Query 043019
Match_columns 204
No_of_seqs 131 out of 1066
Neff 7.6
Searched_HMMs 13730
Date Mon Mar 25 21:07:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043019.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043019hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 12.4 82 0.006 14.8 3.1 19 156-174 3-21 (27)
2 d2r6gf1 e.70.1.1 (F:13-260) Ma 11.0 2.8E+02 0.02 20.1 9.2 54 77-134 3-56 (248)
3 d1uptb_ a.193.1.1 (B:) Golgi a 3.8 1.2E+02 0.0091 17.2 0.4 20 116-135 10-29 (58)
4 d2p7tc1 f.14.1.1 (C:86-119) Po 3.2 3.3E+02 0.024 13.1 3.5 26 132-167 4-29 (34)
5 d1tlha_ a.150.1.1 (A:) Anti-si 2.3 3E+02 0.022 16.8 1.0 33 79-113 30-62 (89)
6 d2c0sa1 a.30.7.1 (A:1-57) Hypo 2.2 4.9E+02 0.036 14.4 1.9 18 37-54 21-38 (57)
7 d1heka_ a.61.1.5 (A:) EIAV mat 2.0 6.7E+02 0.049 15.3 2.6 17 66-82 50-66 (116)
8 d1e12a_ f.13.1.1 (A:) Halorhod 1.9 9.1E+02 0.066 16.6 3.7 12 166-177 149-160 (239)
9 d1xmeb2 f.17.2.1 (B:3-36) Bact 1.9 5.2E+02 0.038 12.2 1.9 20 10-32 7-26 (34)
10 d1m47a_ a.26.1.2 (A:) Interleu 1.9 3.6E+02 0.026 17.4 1.0 7 30-36 111-117 (128)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=12.42 E-value=82 Score=14.81 Aligned_cols=19 Identities=21% Similarity=0.001 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043019 156 KGFIAAFVAVWSTAMQQYH 174 (204)
Q Consensus 156 ~G~~~~l~s~~~~a~~~i~ 174 (204)
.|.+...++.++.|-||-+
T Consensus 3 lgli~~tl~glf~aayqqy 21 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred eeehHHHHHHHHHHHHHHh
Confidence 5778888888888877643
No 2
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=11.01 E-value=2.8e+02 Score=20.14 Aligned_cols=54 Identities=4% Similarity=-0.174 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHHHHhhhhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhh
Q 043019 77 SELVRFVVFANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKL 134 (204)
Q Consensus 77 ~~~~plsl~~~~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~ 134 (204)
.|+..++++.++....--..+..-+..+.- ...+.+.++.++++.||.-..+++
T Consensus 3 lK~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi 56 (248)
T d2r6gf1 3 LKWSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYV 56 (248)
T ss_dssp CTHHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehh
Confidence 367788888888777777777766666543 455677888899998887666654
No 3
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.78 E-value=1.2e+02 Score=17.19 Aligned_cols=20 Identities=5% Similarity=0.199 Sum_probs=13.8
Q ss_pred HHHHHHHhcceecCcchhhh
Q 043019 116 SCFLEVVLDKVRYSRDTKLS 135 (204)
Q Consensus 116 ~~l~~~~~~~~~~s~~~~~s 135 (204)
.++++|..++|.-+..+.++
T Consensus 10 nvLfeYMmG~E~~tlaKVi~ 29 (58)
T d1uptb_ 10 KVLFEYMMGRETKTMAKVIT 29 (58)
T ss_dssp HHHHHHHTTSSHHHHHHHHH
T ss_pred HHHHHHHcCcchhHHHHHHH
Confidence 35678888888766666554
No 4
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=3.23 E-value=3.3e+02 Score=13.10 Aligned_cols=26 Identities=19% Similarity=0.561 Sum_probs=14.9
Q ss_pred hhhhhhhhhhhheeeeeccccccHHHHHHHHHHHHH
Q 043019 132 TKLSILLVLFGVGVCTVTDVSVNAKGFIAAFVAVWS 167 (204)
Q Consensus 132 ~~~sl~~i~~Gv~~~~~~d~~~~~~G~~~~l~s~~~ 167 (204)
+..++++|++|+ +..|.+.+..+..+
T Consensus 4 rcvavvvmvagi----------ts~glv~aa~atwf 29 (34)
T d2p7tc1 4 RCVAVVVMVAGI----------TSFGLVTAALATWF 29 (34)
T ss_dssp HHHHHHHHHHHH----------HHHHHHHHHHHHHH
T ss_pred eEEEEEEEEecc----------chhhhHHHHHHHHh
Confidence 445667777764 34566665555544
No 5
>d1tlha_ a.150.1.1 (A:) Anti-sigma factor AsiA {Bacteriophage T4 [TaxId: 10665]}
Probab=2.26 E-value=3e+02 Score=16.77 Aligned_cols=33 Identities=9% Similarity=-0.077 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHhhhhhccchHHHHHHHhhhhh
Q 043019 79 LVRFVVFANFSIVGMNVSLMWNSVGFYQIAKLSMI 113 (204)
Q Consensus 79 ~~plsl~~~~~i~~~n~sl~~~svs~~qi~K~~~p 113 (204)
=..++++.=+ ++-+-+-+++..||-|++|++++
T Consensus 30 ~~FI~FLNE~--G~r~~G~eft~~sFrqm~~~Lt~ 62 (89)
T d1tlha_ 30 ANFIAFLNEI--GVTHEGRKLNQNSFRKIVSELTQ 62 (89)
T ss_dssp HHHHHHHHHT--TCEETTEECCHHHHHHHHHSSCH
T ss_pred HHHHHHHHHh--CCCcccHHHHHhHHHHHHHHCCH
Confidence 3445555443 34466888999999999998875
No 6
>d2c0sa1 a.30.7.1 (A:1-57) Hypothetical protein BAS4809, C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Probab=2.24 E-value=4.9e+02 Score=14.42 Aligned_cols=18 Identities=17% Similarity=0.314 Sum_probs=13.4
Q ss_pred hhhcCCCchhhHHHHHHH
Q 043019 37 MATYGFSFATTLTGLHFA 54 (204)
Q Consensus 37 l~~~~f~~P~~Lt~~q~~ 54 (204)
...|||..+-++.+-|=+
T Consensus 21 v~~YGf~h~kvl~~SQEL 38 (57)
T d2c0sa1 21 VEKYGFTHHKVISFSQEL 38 (57)
T ss_dssp HHHTCTTSHHHHHHHHHH
T ss_pred HHHHCCCchHHHHHHHHH
Confidence 345899888888877754
No 7
>d1heka_ a.61.1.5 (A:) EIAV matrix antigen {Equine infectious anemia virus, EIAV [TaxId: 11665]}
Probab=2.05 E-value=6.7e+02 Score=15.27 Aligned_cols=17 Identities=0% Similarity=0.370 Sum_probs=9.9
Q ss_pred hCCccCCCCCchhHHHH
Q 043019 66 LGYIQTSHLPFSELVRF 82 (204)
Q Consensus 66 ~~~~~~~~~~~~~~~pl 82 (204)
.+..+.++..+|.++|+
T Consensus 50 tn~~kekdwqlrdiipl 66 (116)
T d1heka_ 50 TNFVKEKDWQLRDVIPL 66 (116)
T ss_dssp CCTTTSSCCCHHHHHHH
T ss_pred ccccccccchHHhhhHH
Confidence 44555555556666664
No 8
>d1e12a_ f.13.1.1 (A:) Halorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=1.92 E-value=9.1e+02 Score=16.64 Aligned_cols=12 Identities=0% Similarity=-0.025 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHh
Q 043019 166 WSTAMQQYHVIL 177 (204)
Q Consensus 166 ~~~a~~~i~~~~ 177 (204)
....+|.++.+.
T Consensus 149 ~~~i~y~l~~~~ 160 (239)
T d1e12a_ 149 FVVVLSALVTDW 160 (239)
T ss_dssp HHHHHHHHHTHH
T ss_pred HHHHHHHHhccc
Confidence 444566666544
No 9
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=1.91 E-value=5.2e+02 Score=12.24 Aligned_cols=20 Identities=15% Similarity=0.434 Sum_probs=11.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHH
Q 043019 10 RKAATDVAAWMFNVVTSVGIIMV 32 (204)
Q Consensus 10 ~~~~~~~~~w~~~~~~S~~~~~~ 32 (204)
+..+.+--.|. .+|..+.|+
T Consensus 7 kailayekgwl---afslamlfv 26 (34)
T d1xmeb2 7 KAILAYEKGWL---AFSLAMLFV 26 (34)
T ss_dssp HHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHhhHH---HHHHHHHHH
Confidence 33444555666 677666544
No 10
>d1m47a_ a.26.1.2 (A:) Interleukin-2 (IL-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.86 E-value=3.6e+02 Score=17.43 Aligned_cols=7 Identities=14% Similarity=0.306 Sum_probs=4.8
Q ss_pred HHHHHHH
Q 043019 30 IMVNKAL 36 (204)
Q Consensus 30 ~~~NK~i 36 (204)
=|+|||+
T Consensus 111 EFLn~WI 117 (128)
T d1m47a_ 111 EFLNRWI 117 (128)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3678885
Done!