BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043020
(564 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H0L|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 442 bits (1137), Expect = e-124, Method: Compositional matrix adjust.
Identities = 214/491 (43%), Positives = 324/491 (65%), Gaps = 19/491 (3%)
Query: 69 ISKEYEAIIGIETHVQLSTLTKAFCTCPYNYGAQPNTSVCPICMGLPGALPVVNSKVVEF 128
++++YEA+IG+E HVQ+ T TK FC C +GA+PNT+VCP+C+G+PGALP+VN + VE+
Sbjct: 1 MNEKYEAVIGLEIHVQMDTKTKMFCGCKVEFGAEPNTNVCPVCLGMPGALPIVNKRAVEY 60
Query: 129 AVKLGLALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHR 188
A++ LALNC++ S F RK YFYPDLPKGYQISQ++ P+AT G+++++LP G +
Sbjct: 61 AIRASLALNCEVHEESVFARKHYFYPDLPKGYQISQYEKPLATNGWVELNLP---NGEKK 117
Query: 189 RFGITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNRAGVPLLEIVSEPDMRTGL 248
+ I R+H+EEDAGK +H D VDLNRAG PL+EIV+EPD+RT
Sbjct: 118 KVRIRRLHIEEDAGKNIHEGDKTL-------------VDLNRAGTPLMEIVTEPDIRTPE 164
Query: 249 EAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSIN 308
EA + +L+ ++RY GVS +M++G LRCD+NVSIRP G +FGT+VEIKN+NSF +
Sbjct: 165 EARLFLEKLRNIMRYAGVSKADMEKGQLRCDINVSIRPKGSKEFGTRVEIKNVNSFRFVQ 224
Query: 309 RAIDFEIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVI 368
+A+++EI RQ + +G ++VQETR ++ + KT MR KE DYRYFP+PDL +
Sbjct: 225 KALEYEIERQINVVEEG--GEVVQETRTFDPQTGKTYPMRTKEEAEDYRYFPDPDLVPLK 282
Query: 369 LNKEYVDSIQSSLPELPEMK-RRRYEEMGLSMQDVLFLANDINVARFFDATIEKGADVKL 427
+ KE+++ I+ ++PELP+ + R +E GLS + L N V FF+ + + K
Sbjct: 283 VKKEWIEEIKKNMPELPDQRFERLIKEYGLSEYEAGILVNHKEVGDFFEEAVRHFKEPKG 342
Query: 428 AANWIMGDIAAYMKNEKLTINXXXXXXXXXXXXXXXXXGATISGKIGKEILFELMAKGGT 487
NW++ D+ ++++ ++I IS KIGKE++ E++ G T
Sbjct: 343 IVNWLINDLLGLLRDKGISIEESPVKPEHLAELVKLIKEKVISTKIGKEVIKEMVETGKT 402
Query: 488 VKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKISKGKA 547
I+ EK L QI D ++I+++V K+ ++PK++E+ + G+ KL GFF GQVM+ ++GKA
Sbjct: 403 PSQIVEEKGLKQITDENQIKELVKKIFEKHPKEVERLKQGEEKLIGFFVGQVMRETRGKA 462
Query: 548 NPGLLNKILLE 558
NP ++NK++ E
Sbjct: 463 NPQVVNKVIRE 473
>pdb|2DF4|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2F2A|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
pdb|2G5H|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|B Chain B, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|B Chain B, The High Resolution Structure Of Gatcab
Length = 483
Score = 422 bits (1085), Expect = e-118, Method: Compositional matrix adjust.
Identities = 218/492 (44%), Positives = 313/492 (63%), Gaps = 20/492 (4%)
Query: 73 YEAIIGIETHVQLSTLTKAFCTCPYNYGAQPNTSVCPICMGLPGALPVVNSKVVEFAVKL 132
+E +IG+E HV+L T +K F P ++GA+PN++ I + PG LPVVN + V++A++
Sbjct: 3 FETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNKRAVDWAMRA 62
Query: 133 GLALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFGI 192
+ALN +++ SKFDRK YFYPD PK YQISQFD PI GY+D +E G +R GI
Sbjct: 63 AMALNMEIATESKFDRKNYFYPDNPKAYQISQFDQPIGENGYID----IEVDGETKRIGI 118
Query: 193 TRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNRAGVPLLEIVSEPDMRTGLEAAE 252
TR+HMEEDAGK H GEYS VDLNR G PL+EIVSEPD+R+ EA
Sbjct: 119 TRLHMEEDAGKSTHK--GEYS-----------LVDLNRQGTPLIEIVSEPDIRSPKEAYA 165
Query: 253 YAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINRAID 312
Y +L+ +++Y GVS+ M+EGSLRCD N+S+RP GQ KFGTK E+KNLNSF+ + + ++
Sbjct: 166 YLEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKGLE 225
Query: 313 FEIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILNKE 372
+E RQ G +I QETR ++E + KT+ MR KEG DYRYFPEPD+ + ++
Sbjct: 226 YEEKRQEEELLNG--GEIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDA 283
Query: 373 YVDSIQSSLPELPEMKRRRY-EEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANW 431
+ + ++ ++PELP+ ++ +Y E+GL D L ++ FF++TIE GADVKL +NW
Sbjct: 284 WKERVRQTIPELPDERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADVKLTSNW 343
Query: 432 IMGDIAAYMKNEKLTINXXXXXXXXXXXXXXXXXGATISGKIGKEILFELMAKGGTVKGI 491
+MG + Y+ ++ + T+S KI K++ EL AKGG K I
Sbjct: 344 LMGGVNEYLNKNQVELLDTKLTPENLAGMIKLIEDGTMSSKIAKKVFPELAAKGGNAKQI 403
Query: 492 IIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKISKGKANPGL 551
+ + LVQI D + + K V++ L N + +E Y+ GK K GF GQ+MK SKG+ANP L
Sbjct: 404 MEDNGLVQISDEATLLKFVNEALDNNEQSVEDYKNGKGKAMGFLVGQIMKASKGQANPQL 463
Query: 552 LNKILLEKLNAK 563
+N++L ++L+ +
Sbjct: 464 VNQLLKQELDKR 475
>pdb|3AL0|B Chain B, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 482
Score = 418 bits (1075), Expect = e-117, Method: Compositional matrix adjust.
Identities = 215/486 (44%), Positives = 305/486 (62%), Gaps = 15/486 (3%)
Query: 73 YEAIIGIETHVQLSTLTKAFCTCPYN-YGAQPNTSVCPICMGLPGALPVVNSKVVEFAVK 131
Y +IG+E HVQLST TKAFC+CP + + PNT++CP+C G PGALPV N +++ FAVK
Sbjct: 3 YRPVIGLEIHVQLSTKTKAFCSCPADVFELPPNTAICPVCTGQPGALPVPNEEMIRFAVK 62
Query: 132 LGLALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFG 191
LALNCK+ S+FDRK YFYPDLPKGYQISQ+ PIAT G+L++D G ++
Sbjct: 63 TALALNCKIHKYSRFDRKNYFYPDLPKGYQISQYFYPIATEGFLEID----GDEGRKKVR 118
Query: 192 ITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNRAGVPLLEIVSEPDMRTGLEAA 251
I R+H+EEDAGKL+H D IT Y+L VD+NR GVPL+EIV+EPD+ + EA
Sbjct: 119 IRRLHLEEDAGKLVHEGDS-----ITR-ASYSL-VDMNRCGVPLIEIVTEPDISSPREAR 171
Query: 252 EYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINRAI 311
+ +L+ +VRYLGVS G+M++G+LRCD N+S+ + +VE+KN+NSF + RA+
Sbjct: 172 VFMEKLRSIVRYLGVSTGDMEKGALRCDANISVVDTETGRQSNRVEVKNMNSFRFVERAL 231
Query: 312 DFEIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILNK 371
++E R ++ + + + + +ETR W+ ++ TV+MR KE +DYRYFPEPD+P V+L+
Sbjct: 232 EYEFER--IVKAMERGEDVERETRGWDMATKITVSMRGKEEESDYRYFPEPDIPPVVLSD 289
Query: 372 EYVDSIQSSLPELPEMKRRRY-EEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAAN 430
EY++ ++ LPELP+ K R+ E GL D L + +A FF+ ++ K +N
Sbjct: 290 EYLEEVKKELPELPDEKAERFMREYGLPEYDAKVLTSSKELAEFFEECVKVVNRPKDLSN 349
Query: 431 WIMGDIAAYMKNEKLTINXXXXXXXXXXXXXXXXXGATISGKIGKEILFELMAKGGTVKG 490
WIM ++ + + I IS KI KEI E+ G
Sbjct: 350 WIMTEVLRELNERNIEITESKLTPQHFADLFKLMDEGKISIKIAKEIFPEVFETGKMPSQ 409
Query: 491 IIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKISKGKANPG 550
I+ EK L QI D IE++V K + +NPK ++ Y+ GK K GFF G VM+ +KGKANP
Sbjct: 410 IVEEKGLTQINDEKLIEELVKKAMEQNPKAVQDYKSGKKKAAGFFVGYVMRETKGKANPE 469
Query: 551 LLNKIL 556
L N+I+
Sbjct: 470 LTNRII 475
>pdb|3KFU|F Chain F, Crystal Structure Of The Transamidosome
pdb|3KFU|I Chain I, Crystal Structure Of The Transamidosome
Length = 466
Score = 345 bits (884), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 180/412 (43%), Positives = 250/412 (60%), Gaps = 26/412 (6%)
Query: 73 YEAIIGIETHVQLSTLTKAFCTCPYNY-GAQPNTSVCPICMGLPGALPVVNSKVVEFAVK 131
YEA+IG+E H+ L T TK FC C +Y GA+PNT CP+C+GLPGALPV N VE ++
Sbjct: 2 YEAVIGLEVHLHLKTRTKMFCGCRADYFGAEPNTHTCPVCLGLPGALPVPNRVAVEHGLR 61
Query: 132 LGLALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFG 191
L LAL ++ F RK YFYPDLPK YQISQ+D+P+ GG L + G RR
Sbjct: 62 LALALGAEVPERLVFHRKNYFYPDLPKNYQISQYDLPLGRGGSLPL--------GERRVR 113
Query: 192 ITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNRAGVPLLEIVSEPDMRTGLEAA 251
I R+H+EEDAGK LH + +DLNRAG PL+E+V+EPD++T EA
Sbjct: 114 IKRLHLEEDAGKSLHLEGRTL-------------LDLNRAGSPLIELVTEPDLKTPEEAR 160
Query: 252 EYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINRAI 311
+ +Q LV+ LG+S+ + +EG LR DVNVS+R VG+ GTKVEIKNLNSF S+ RA+
Sbjct: 161 LFLQRIQALVQTLGISDASPEEGKLRADVNVSVRRVGEP-LGTKVEIKNLNSFKSVQRAL 219
Query: 312 DFEIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILNK 371
++EI RQ + +G +++ Q T +EEGS KT MR KE ADYRYFPEPDLP V + +
Sbjct: 220 EYEIRRQTEILRRG--EKVKQATMGFEEGSGKTYPMRTKEEEADYRYFPEPDLPPVAIPR 277
Query: 372 EYVDSIQSSLPELPEMKRRRYEEMGLSMQDVLFLANDINVARFFDATIEKG-ADVKLAAN 430
++++ ++ SLPELP K RY +G+ +D LA ++ARF D + G A + AN
Sbjct: 278 DWLEEVRRSLPELPWEKEARYRALGIKEKDAEVLAYTPSLARFLDQALPLGLASPQALAN 337
Query: 431 WIMGDIAAYMKNEKLTINXXXXXXXXXXXXXXXXXGATISGKIGKEILFELM 482
W++ D+A + L + ++ ++ K +L E++
Sbjct: 338 WLLADVAGLLHERGLRLEETRLSPEGLARLVGLFERGEVTSRVAKSLLPEVL 389
>pdb|2D6F|C Chain C, Crystal Structure Of Glu-Trna(Gln) Amidotransferase In The
Complex With Trna(Gln)
pdb|2D6F|D Chain D, Crystal Structure Of Glu-Trna(Gln) Amidotransferase In The
Complex With Trna(Gln)
Length = 619
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 110/279 (39%), Gaps = 69/279 (24%)
Query: 77 IGIETHVQLSTLTKAFCTCPYNY-GAQPNTSVC--------------------------- 108
+G+E H QL T +K FC C ++P+ +
Sbjct: 10 MGLEIHQQLDTESKLFCPCRTELTDSEPDHDIVRNLRPTQSELGKFDRAAFEEAMRKLHF 69
Query: 109 -------PICMGLPGALPV--VNSKVVEFAVKLGLALNCKLSFNSKFDRKQYFYPDLPKG 159
C+ P +N + +E AV + L LN ++ RKQ G
Sbjct: 70 HYENYHEETCLVEADEEPPHPLNPEALEIAVTIALLLNMRVVDEFHTMRKQVIDGSNTGG 129
Query: 160 YQISQFDIPIATGGYLDVDLPVEYGGGHRRFGITRVHMEEDAGKLLHADDGEYSQEITFP 219
+Q + +AT G+L+ I + +EEDA + + E + F
Sbjct: 130 FQRTGL---VATDGHLET--------PQGTVKIENLCLEEDAARRIR----ETGDGVVFR 174
Query: 220 IIYALQVDLNRAGVPLLEIVSEPDMRTGLEAAEYAAELQRLVRYLGVSNGNMQEGSLRCD 279
L+R G+PL+EI ++P M + E A ++ +++R V G G++R D
Sbjct: 175 --------LDRLGIPLVEITTDPSMSDPQQLREVAYQIGQILRSTRVKRGL---GTIRQD 223
Query: 280 VNVSIRPVGQSKFGTKVEIKNLNSFSSINRAIDFEIARQ 318
+N+SIR G +VE+K + I ++ E+ RQ
Sbjct: 224 LNISIRD------GARVEVKGVQDLDLIPEIVEREVKRQ 256
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 112/278 (40%), Gaps = 46/278 (16%)
Query: 317 RQALLYSQGKADQIVQETRLWEEGSQKTVTMR-----------KKEGLAD---------- 355
R A+ SQG A +V R+ E + + V R ++ L D
Sbjct: 356 RDAVGASQGDAVVMVAHERVTAENALREVIRRAEMAIQGVPEETRKALPDGNTQYLRPLP 415
Query: 356 --YRYFPEPDLPEVILNKEYVDSIQSSLPELPEMKRRR-YEEMGLSMQDVLFLANDINVA 412
R + E D+P + + ++ I+ +LPELP K+ R + GLS +D+ N+
Sbjct: 416 TSSRMYLETDIPLFRIEDDLLEGIRRNLPELPSEKKERIMRDYGLS-EDLASQLVKRNLV 474
Query: 413 RFFDATIEKGADVKLAANWIMGDIAAY----MKNEKLTINXXXXXXXXXXXXXXXXXGAT 468
F+A E D + A+ + AY ++ E ++
Sbjct: 475 DEFEALTEFRVDTTVIASLL-----AYTLRELRREGHDVDGLGLDELRDAIKLLEV---- 525
Query: 469 ISGKIGKEILFEL---MAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYR 525
GKI K+ L ++ MA G K + ++ EIE ++ +++ N + +
Sbjct: 526 --GKISKDALRDIVACMADEGLAAEDAARKLNLLLLAEDEIESIIQEIVEGNLDMISERG 583
Query: 526 GGKTKLQGFFAGQVMKISKGKANPGLLNKILLEKLNAK 563
G G GQ M +G+A+ ++N+IL EK+ +
Sbjct: 584 MGAM---GPLMGQAMGRLRGRADGKVVNRILREKIQER 618
>pdb|2HZ7|A Chain A, Crystal Structure Of The Glutaminyl-Trna Synthetase From
Deinococcus Radiodurans
Length = 851
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 34/44 (77%)
Query: 506 IEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKISKGKANP 549
++++V +V++ NP + E YRGGKT L GFF GQVM+ + GKA+P
Sbjct: 796 LQQVVAQVIAANPDKAEAYRGGKTALLGFFTGQVMRATAGKADP 839
>pdb|1ZQ1|C Chain C, Structure Of Gatde Trna-Dependent Amidotransferase From
Pyrococcus Abyssi
pdb|1ZQ1|D Chain D, Structure Of Gatde Trna-Dependent Amidotransferase From
Pyrococcus Abyssi
Length = 633
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 89/197 (45%), Gaps = 31/197 (15%)
Query: 122 NSKVVEFAVKLGLALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPV 181
+ + +E A+++ LN K + RK G+Q + IAT G V+ P
Sbjct: 97 DREALEVALQIAYLLNAKPVDEVYYMRKIVIDGSNVSGFQRTAI---IATDG--KVETP- 150
Query: 182 EYGGGHRRFGITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNRAGVPLLEIVSE 241
+G GI + +EEDA +++ D E +IY L +R G+PL+EI +
Sbjct: 151 -WGA----VGIPTICLEEDAARIIERKDKE--------VIYRL----DRLGIPLIEISTT 193
Query: 242 PDMRTGLEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNL 301
PD+ +A A + +R + G++R D+NVSI K G ++EIK +
Sbjct: 194 PDIHHPEQAKVVAKFIGDALRATKKVKRGL--GTIRQDLNVSI------KGGARIEIKGV 245
Query: 302 NSFSSINRAIDFEIARQ 318
I I+ E+ RQ
Sbjct: 246 QELDMIPIIIEREVERQ 262
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 89/209 (42%), Gaps = 9/209 (4%)
Query: 357 RYFPEPDLPEVILNKEYVDSIQSSLPELPEMKRRRY-EEMGLSMQDVLFLANDINVARFF 415
R +PE D+P + + + I+ +LPELP+ K RY +E L L +D F
Sbjct: 431 RMYPETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYKLDRSLAQTLVDD-ERDELF 489
Query: 416 DATIEKGADVKLAANWIMGDIAAYMKNEKLTINXXXXXXXXXXXXXXXXXGATISGKIGK 475
+ + G LAA+ ++ +K + + I+ + +
Sbjct: 490 EELVSMGVKPSLAASILV----VVLKGLRKEVPIENVTDEHIREAFQLYLEGKIAKEAFE 545
Query: 476 EILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFF 535
EI EL + E+ + ++ E+ +++++V+ +N +E + G
Sbjct: 546 EIFKELARNPSKSAREVAEEKGLTLLSEEEVTRIIEEVIQQN---IEVVKAKGMGAMGLI 602
Query: 536 AGQVMKISKGKANPGLLNKILLEKLNAKS 564
G+VM +GKA+ L+++I+ KL S
Sbjct: 603 MGRVMAKVRGKADGKLVSQIVRRKLQEIS 631
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 118 LPVVNSKVVEFAVKLGLALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIAT 171
+P++ +V F G L+ F+S DRK F DL KG I +DI IAT
Sbjct: 66 MPMIGDRV--FVHYTGWLLDG-TKFDSSLDRKDKFSFDLGKGEVIKAWDIAIAT 116
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 142 FNSKFDRKQYFYPDLPKGYQISQFDIPIAT 171
F+S DRK F DL KG I +DI IAT
Sbjct: 71 FDSSLDRKDKFSFDLGKGEVIKAWDIAIAT 100
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 142 FNSKFDRKQYFYPDLPKGYQISQFDIPIAT 171
F+S DRK F DL KG I +DI IAT
Sbjct: 67 FDSSLDRKDKFSFDLGKGEVIKAWDIAIAT 96
>pdb|3II2|A Chain A, Structure Of Orf157 From Acidianus Filamentous Virus 1
pdb|3II3|A Chain A, Structure Of Orf157 From Acidianus Filamentous Virus 1
Length = 157
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 125 VVEFAVKLGLALNCKLSFNSKFD-RKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEY 183
VVE+ V + L K+S F +K++F Q+ + + G Y+ L V
Sbjct: 6 VVEYEV-VSKNLTSKMSHELLFSVKKRWFVKPFRHDRQLGKLHYKLLPGNYIKFGLYVLK 64
Query: 184 GGGHRRFGITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLN 229
+ RF I VH+++D GK+ + YS E + I ++ DLN
Sbjct: 65 NQDYARFEIAWVHVDKD-GKI--EERTVYSIETYWHIFIDIENDLN 107
>pdb|3ILD|A Chain A, Structure Of Orf157-k57a From Acidianus Filamentous Virus
1
Length = 157
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 125 VVEFAVKLGLALNCKLSFNSKFD-RKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEY 183
VVE+ V + L K+S F +K++F Q+ + + G Y+ L V
Sbjct: 6 VVEYEV-VSKNLTSKMSHELLFSVKKRWFVKPFRHDRQLGKLHYKLLPGNYIAFGLYVLK 64
Query: 184 GGGHRRFGITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLN 229
+ RF I VH+++D GK+ + YS E + I ++ DLN
Sbjct: 65 NQDYARFEIAWVHVDKD-GKI--EERTVYSIETYWHIFIDIENDLN 107
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 142 FNSKFDRKQYFYPDLPKGYQISQFDIPIAT 171
F+S DRK F DL KG I +DI +AT
Sbjct: 66 FDSSLDRKDKFSFDLGKGEVIKAWDIAVAT 95
>pdb|2FNC|A Chain A, Thermotoga Maritima Maltotriose Binding Protein Bound With
Maltotriose
Length = 381
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 367 VILNKEYVDSIQSSLPELPEMKRRRYEEMGLSMQDVLFLANDINVARFF 415
+I NK+YVDS+ ++ EL E ++ EE G ++ ++ +VA F+
Sbjct: 111 LIYNKDYVDSVPKTMDELIEKAKQIDEEYGGEVRGFIY-----DVANFY 154
>pdb|3ILE|A Chain A, Crystal Structure Of Orf157-E86a Of Acidianus Filamentous
Virus 1
Length = 157
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 125 VVEFAVKLGLALNCKLSFNSKFD-RKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEY 183
VVE+ V + L K+S F +K++F Q+ + + G Y+ L V
Sbjct: 6 VVEYEV-VSKNLTSKMSHELLFSVKKRWFVKPFRHDRQLGKLHYKLLPGNYIKFGLYVLK 64
Query: 184 GGGHRRFGITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLN 229
+ RF I VH+++D GK+ YS E + I ++ DLN
Sbjct: 65 NQDYARFEIAWVHVDKD-GKI--EARTVYSIETYWHIFIDIENDLN 107
>pdb|1CRB|A Chain A, Crystallographic Studies On A Family Of Cellular
Lipophilic Transport Proteins. Refinement Of P2 Myelin
Protein And The Structure Determination And Refinement
Of Cellular Retinol-Binding Protein In Complex With
All-Trans-Retinol
pdb|1MX7|A Chain A, Two Homologous Rat Cellular Retinol-Binding Proteins
Differ In Local Structure And Flexibility
pdb|1MX8|A Chain A, Two Homologous Rat Cellular Retinol-Binding Proteins
Differ In Local Structure And Flexibility
Length = 134
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 266 VSNGNMQEGSLRCDVNVSIRPVGQ--------SKFGTKVEIKNLNSFSSINRAIDFEIAR 317
+SN N +E DVNV++R + + G + I+ L++F N +DF++ +
Sbjct: 11 LSNENFEEYLRALDVNVALRKIANLLKPDKEIVQDGDHMIIRTLSTFR--NYIMDFQVGK 68
Query: 318 QALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEG 352
+ G D+ T W+ + V +KEG
Sbjct: 69 EFEEDLTGIDDRKCMTTVSWDGDKLQCVQKGEKEG 103
>pdb|1JBH|A Chain A, Solution Structure Of Cellular Retinol Binding Protein
Type- I In The Ligand-Free State
pdb|1KGL|A Chain A, Solution Structure Of Cellular Retinol Binding Protein
Type- I In Complex With All-Trans-Retinol
Length = 135
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 266 VSNGNMQEGSLRCDVNVSIRPVGQ--------SKFGTKVEIKNLNSFSSINRAIDFEIAR 317
+SN N +E DVNV++R + + G + I+ L++F N +DF++ +
Sbjct: 12 LSNENFEEYLRALDVNVALRKIANLLKPDKEIVQDGDHMIIRTLSTFR--NYIMDFQVGK 69
Query: 318 QALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEG 352
+ G D+ T W+ + V +KEG
Sbjct: 70 EFEEDLTGIDDRKCMTTVSWDGDKLQCVQKGEKEG 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,573,814
Number of Sequences: 62578
Number of extensions: 634510
Number of successful extensions: 1581
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1524
Number of HSP's gapped (non-prelim): 38
length of query: 564
length of database: 14,973,337
effective HSP length: 104
effective length of query: 460
effective length of database: 8,465,225
effective search space: 3894003500
effective search space used: 3894003500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)