Query 043020
Match_columns 564
No_of_seqs 198 out of 1314
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 12:01:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043020.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043020hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02751 glutamyl-tRNA(Gln) am 100.0 4E-181 9E-186 1464.3 55.4 543 1-562 1-543 (544)
2 TIGR00133 gatB glutamyl-tRNA(G 100.0 9E-172 2E-176 1381.3 52.9 474 71-561 2-478 (478)
3 COG0064 GatB Asp-tRNAAsn/Glu-t 100.0 2E-171 4E-176 1359.5 49.5 477 70-562 3-482 (483)
4 PRK05477 gatB aspartyl/glutamy 100.0 3E-170 6E-175 1367.2 51.9 472 70-560 2-474 (474)
5 KOG2438 Glutamyl-tRNA amidotra 100.0 2E-155 3E-160 1204.7 40.7 480 66-561 16-504 (505)
6 PRK04028 glutamyl-tRNA(Gln) am 100.0 3E-139 7E-144 1153.1 47.3 445 73-562 9-626 (630)
7 TIGR00134 gatE_arch glutamyl-t 100.0 9E-134 2E-138 1109.6 46.7 452 71-562 1-619 (620)
8 PF02934 GatB_N: GatB/GatE cat 100.0 8E-126 2E-130 961.1 23.4 288 74-377 1-289 (289)
9 COG2511 GatE Archaeal Glu-tRNA 100.0 7.8E-81 1.7E-85 659.6 39.8 447 71-562 4-627 (631)
10 PRK14703 glutaminyl-tRNA synth 100.0 1.9E-36 4.2E-41 342.9 22.2 176 384-561 595-771 (771)
11 PF02637 GatB_Yqey: GatB domai 100.0 4E-36 8.6E-41 280.6 14.7 148 413-560 1-148 (148)
12 smart00845 GatB_Yqey GatB doma 100.0 1.2E-34 2.6E-39 270.8 17.5 147 414-560 1-147 (147)
13 PF09424 YqeY: Yqey-like prote 98.8 1.6E-07 3.5E-12 88.0 13.9 114 428-560 22-143 (143)
14 COG1610 Uncharacterized conser 98.6 2.2E-07 4.8E-12 86.3 10.9 98 450-561 43-148 (148)
15 PF04558 tRNA_synt_1c_R1: Glut 96.9 0.069 1.5E-06 51.5 17.1 151 386-550 4-164 (164)
16 PLN02859 glutamine-tRNA ligase 96.9 0.036 7.7E-07 64.7 17.8 161 387-560 7-175 (788)
17 KOG1148 Glutaminyl-tRNA synthe 95.7 0.21 4.6E-06 56.3 14.3 159 388-559 6-168 (764)
18 PF11867 DUF3387: Domain of un 65.0 74 0.0016 33.9 11.7 101 361-466 147-256 (335)
19 KOG3591 Alpha crystallins [Pos 61.2 7.4 0.00016 37.9 3.0 47 144-194 115-163 (173)
20 COG3937 Uncharacterized conser 58.4 29 0.00063 31.4 5.9 61 451-511 20-93 (108)
21 PF09862 DUF2089: Protein of u 53.4 1E+02 0.0022 28.2 8.7 27 452-478 86-112 (113)
22 PRK06012 flhA flagellar biosyn 52.5 1.9E+02 0.0042 34.3 13.1 94 451-558 531-636 (697)
23 COG4050 Uncharacterized protei 44.1 36 0.00078 31.5 4.3 39 226-267 112-150 (152)
24 PF02885 Glycos_trans_3N: Glyc 38.1 1.5E+02 0.0033 23.8 6.8 38 451-488 14-51 (66)
25 PF08006 DUF1700: Protein of u 36.7 2.6E+02 0.0057 26.8 9.4 48 452-517 17-64 (181)
26 PRK00745 4-oxalocrotonate taut 35.7 84 0.0018 24.5 4.9 35 233-268 1-36 (62)
27 COG3495 Uncharacterized protei 35.4 15 0.00033 34.8 0.6 27 153-179 115-141 (166)
28 KOG0719 Molecular chaperone (D 34.8 3.1E+02 0.0067 28.5 9.6 109 402-525 65-174 (264)
29 TIGR01398 FlhA flagellar biosy 34.5 5.1E+02 0.011 30.7 12.7 92 452-558 516-620 (678)
30 PRK12720 secretion system appa 34.2 5E+02 0.011 30.8 12.5 93 451-558 510-615 (675)
31 PF15399 DUF4620: Domain of un 32.5 13 0.00028 32.5 -0.4 31 103-141 65-95 (113)
32 PHA01082 putative transcriptio 32.4 17 0.00037 33.6 0.4 56 186-260 77-132 (133)
33 PF02671 PAH: Paired amphipath 31.4 68 0.0015 24.0 3.5 34 491-525 10-43 (47)
34 PRK05225 ketol-acid reductoiso 31.3 2.8E+02 0.0061 31.5 9.5 103 386-489 233-383 (487)
35 PRK02220 4-oxalocrotonate taut 31.0 1.1E+02 0.0023 23.8 4.7 36 233-269 1-37 (61)
36 TIGR01399 hrcV type III secret 29.7 8E+02 0.017 29.2 13.3 154 385-558 451-619 (677)
37 PF10877 DUF2671: Protein of u 29.0 47 0.001 27.9 2.4 32 155-201 40-71 (90)
38 PRK15337 type III secretion sy 27.0 6.7E+02 0.014 29.9 12.0 92 452-558 525-628 (686)
39 PF00627 UBA: UBA/TS-N domain; 27.0 2E+02 0.0044 20.3 5.2 36 385-432 2-37 (37)
40 PF09987 DUF2226: Uncharacteri 26.9 1.9E+02 0.0041 30.8 7.0 51 466-517 156-208 (297)
41 cd00923 Cyt_c_Oxidase_Va Cytoc 26.5 3.1E+02 0.0067 24.7 7.1 35 412-446 62-96 (103)
42 PRK12792 flhA flagellar biosyn 26.1 8.4E+02 0.018 29.1 12.6 155 385-558 465-635 (694)
43 cd00194 UBA Ubiquitin Associat 25.0 1.8E+02 0.004 20.3 4.7 36 386-433 2-37 (38)
44 PF08542 Rep_fac_C: Replicatio 24.9 1.8E+02 0.0039 24.2 5.4 42 452-495 3-44 (89)
45 PRK00116 ruvA Holliday junctio 24.8 6.5E+02 0.014 24.7 10.0 86 395-481 79-173 (192)
46 COG1379 PHP family phosphoeste 23.6 1.2E+02 0.0026 32.8 4.8 112 408-530 238-369 (403)
47 PRK14604 ruvA Holliday junctio 23.2 6.8E+02 0.015 24.8 9.8 47 395-442 79-134 (195)
48 PF07390 P30: Mycoplasma P30 p 23.1 96 0.0021 31.0 3.7 16 155-170 199-214 (266)
49 PF08546 ApbA_C: Ketopantoate 23.1 3.8E+02 0.0083 23.6 7.5 71 488-560 47-121 (125)
50 COG1298 FlhA Flagellar biosynt 23.1 3.8E+02 0.0082 31.7 8.9 87 427-517 460-547 (696)
51 PF11212 DUF2999: Protein of u 22.8 3E+02 0.0065 23.4 6.0 21 532-558 46-66 (82)
52 KOG2243 Ca2+ release channel ( 22.8 72 0.0016 40.2 3.2 66 104-172 919-988 (5019)
53 cd04790 HTH_Cfa-like_unk Helix 22.4 7E+02 0.015 24.0 11.7 52 335-409 19-71 (172)
54 TIGR01398 FlhA flagellar biosy 22.3 3.5E+02 0.0076 32.1 8.6 87 427-517 445-532 (678)
55 COG2003 RadC DNA repair protei 22.2 6.3E+02 0.014 25.9 9.4 119 388-533 12-138 (224)
56 PF14367 DUF4411: Domain of un 22.0 5.2E+02 0.011 24.5 8.5 93 452-557 20-115 (162)
57 PRK01964 4-oxalocrotonate taut 21.9 2E+02 0.0044 22.6 4.8 36 233-269 1-37 (64)
58 PF14483 Cut8_M: Cut8 dimerisa 21.7 1.4E+02 0.0031 22.0 3.5 25 502-526 11-35 (38)
59 PF12668 DUF3791: Protein of u 21.6 1.9E+02 0.004 23.2 4.6 54 389-444 8-62 (62)
60 PRK13711 conjugal transfer pro 21.5 41 0.00088 29.3 0.7 52 91-160 11-62 (113)
61 cd04770 HTH_HMRTR Helix-Turn-H 21.1 1.9E+02 0.004 25.9 5.0 51 335-407 18-68 (123)
62 PRK14606 ruvA Holliday junctio 20.8 7.4E+02 0.016 24.4 9.5 48 395-442 79-134 (188)
63 smart00165 UBA Ubiquitin assoc 20.7 2.6E+02 0.0057 19.4 4.7 35 387-433 3-37 (37)
64 COG5418 Predicted secreted pro 20.5 47 0.001 31.8 1.0 16 153-168 38-53 (164)
65 PF07547 RSD-2: RSD-2 N-termin 20.0 1.1E+02 0.0024 26.6 3.0 34 226-259 46-79 (84)
No 1
>PLN02751 glutamyl-tRNA(Gln) amidotransferase
Probab=100.00 E-value=4.1e-181 Score=1464.33 Aligned_cols=543 Identities=78% Similarity=1.207 Sum_probs=506.4
Q ss_pred ChhhhhhhhcccccccccchhhhccCCcceecccCccchhhhhcccCCCCCCCCCCCCccccccchhhhhcccceeeeee
Q 043020 1 MASFLFRTIQSHSFLLCPTTLLRRNNGAFYCSMKSTHTQTATQEKQQPPPKIKSSPQGNQAKTRTLDRISKEYEAIIGIE 80 (564)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~vIGLE 80 (564)
||++++|++|+++++++++.+|+|+.+.|+|+...+++.+++.+ .+.++ +++.+....++|++|||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----------~~~~~~~~~~~~e~vIGLE 68 (544)
T PLN02751 1 MALTLLRGVQTPVPSRRGPRLFRRASSRFSVRATTATSAAAAES-KQAPK-----------KSEALDKIEQDFEAVIGIE 68 (544)
T ss_pred CchHHhhhcCCCCccccCcccccccCCcceeeeecccccccccc-ccCcc-----------ccccccccccCceEEEEEE
Confidence 89999999999999999999999999999999666555443222 22221 2223333346999999999
Q ss_pred eeeeccCCcccccCCCCCCCCCCCCccCceecCCCCCCccCCHHHHHHHHHHHHHcCCccCCCccccccccCCCCCCCCc
Q 043020 81 THVQLSTLTKAFCTCPYNYGAQPNTSVCPICMGLPGALPVVNSKVVEFAVKLGLALNCKLSFNSKFDRKQYFYPDLPKGY 160 (564)
Q Consensus 81 iHvQL~T~tKlFc~c~~~~~~~PNt~vc~v~lg~PGtLP~lN~~av~~Ai~~~lALnc~I~~~s~FdRK~YfYpDlPkGY 160 (564)
|||||+|+|||||+|+++||++|||+|||||+|+|||||+||++||++||++|+||||+|++.++|||||||||||||||
T Consensus 69 iHvqL~T~tKlFc~c~~~~g~~PNt~vcpvclg~PGtLPvLN~~aV~~Ai~~glALnc~I~~~s~FdRK~YfYpDLPkGY 148 (544)
T PLN02751 69 THVQLSTLTKAFCSCPYNYGAEPNTTVCPVCMGLPGTLPVLNSKVVEKAVKLGLALNCKISLKSKFDRKQYFYPDLPKGY 148 (544)
T ss_pred EEEeecCCcCccCCCCcccCCCCccCcCccccCCCCCCCccCHHHHHHHHHHHHHcCCccccccEEeccccccCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCcceeeccEEEEecccccCCCeeeEEEeEeeeccccccccccCCCCCccccccccccceeeeecCCCCceeEEee
Q 043020 161 QISQFDIPIATGGYLDVDLPVEYGGGHRRFGITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNRAGVPLLEIVS 240 (564)
Q Consensus 161 QITQ~~~PI~~~G~i~~~~~~~~~~~~k~i~I~rihLEEDagK~~h~~~~~~~~~~~~~~~~~~lvD~NRaGvPLiEIVT 240 (564)
||||++.|||.||+|++.++.+++|+.|+|+|+||||||||||++|++.++++. + .+||||||||+|||||||
T Consensus 149 QITQ~~~PIa~~G~l~i~~~~~~~g~~k~I~I~rIhLEEDagK~ih~~~~~~~~--~-----~slvD~NRaGvPLIEIVT 221 (544)
T PLN02751 149 QISQFDIPIAEGGYVDVDLPVEFGGGHRRFGITRVHMEEDAGKLLHSGNGSYSQ--G-----SALVDLNRAGVPLLEIVS 221 (544)
T ss_pred cccccccceecCCEEEEEecccCCCceeEEeeEEEEeccccccccccCCCCccC--c-----cceeeccCCCCceEEEee
Confidence 999999999999999997543334556899999999999999999964332211 1 247999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCcccCCcCCCcccccccccccCCCCCCCccEEEEcCCCChHHHHHHHHHHHHHHHH
Q 043020 241 EPDMRTGLEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINRAIDFEIARQAL 320 (564)
Q Consensus 241 ePd~~s~~EA~~~~~~L~~ilr~lgvs~g~meeGslR~DvNVSv~~~g~~~~g~rvEIKNlnS~~~i~~AI~~Ei~RQ~~ 320 (564)
+|||+||+||++|+++||+||||+|||||+||+|+||||||||||+.|+..||+||||||||||++|++||+||+.||++
T Consensus 222 ePdi~speEA~a~l~~L~~ilr~lgisdg~meeGslRcDvNVSvr~~g~~~~GtRvEIKNlNS~~~v~kAI~yEi~RQ~~ 301 (544)
T PLN02751 222 EPDMRTGIEAAEYGAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQEEFGTKVEIKNMNSFSAMSRAIDFEISRQIL 301 (544)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCcccCCcccCccccceeeccccCCCCCCCCeEEEeCCccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCccccccceeecCCCeeEeccCCCCCCCCCcCcCCCCCceecChHHHHHHHhcCCCCHHHHHHHHHHcCCCHH
Q 043020 321 LYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILNKEYVDSIQSSLPELPEMKRRRYEEMGLSMQ 400 (564)
Q Consensus 321 ll~~g~~~~i~qETR~wd~~~~~T~~mR~Ke~~~DYRy~PEpdLpp~~l~~e~i~~i~~~lPElP~~~~~Rl~~ygLs~~ 400 (564)
+++.|.+++|.||||+||+.+++|+.||+||++.|||||||||||||+|+++||++++++|||||+++++||.+|||+.+
T Consensus 302 ll~~G~~~~i~qeTR~wd~~~~~Tv~mR~KE~a~DYRyfPEPDLppi~i~~e~i~~ir~~lPElP~~~~~Rl~~~gLs~~ 381 (544)
T PLN02751 302 LHRQGQGDEIVQETRLWDEGAQKTVTMRKKEGLADYRYFPEPDLPEVVLTEEYVDSIRASMPELPEAKRRRYENMGLSMQ 381 (544)
T ss_pred HHHcCCCCcccccccCcCCCCCeEeecccccchhhcCcCCCCCCCceecCHHHHHHHHHhCCCCHHHHHHHHHHcCCCHH
Confidence 99999222999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred HHHHHHhChhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCcccccCCHHHHHHHHHHHHcCccchHHHHHHHHH
Q 043020 401 DVLFLANDINVARFFDATIEKGADVKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELIASIKGATISGKIGKEILFE 480 (564)
Q Consensus 401 dA~~L~~d~~la~yFE~~v~~~~~pk~vaNWi~~ell~~L~~~~~~i~~~~ispe~LaeLI~li~~g~IS~k~AK~il~~ 480 (564)
||.+|++|+.+++|||++++.+.+|+.+||||++||+++||+.++++++++++|++|++||.++++|+||+++||++|++
T Consensus 382 dA~~L~~~~~~a~ffe~~~~~~~~~k~~anwi~~el~~~l~~~~~~i~~~~l~p~~laeLi~li~~g~Is~~~AK~vl~~ 461 (544)
T PLN02751 382 DVLFLANDKNVAEFFDATLAKGADAKLAANWIMGDIAAYLKNEKVSISEIKLTPKELAELIASIKDGTISGKIGKEILPE 461 (544)
T ss_pred HHHHHHcCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCChhhcCCCHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 99999999999999999998888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhChHHHHHhhcCccchhhHHHhHHhhhcCCCCChHHHHHHHHHHh
Q 043020 481 LMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKISKGKANPGLLNKILLEKL 560 (564)
Q Consensus 481 ll~~~~~~~~IIee~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk~Gk~k~~gflmGqVMk~tkGkAdPk~V~~il~e~L 560 (564)
|++++++|.+||+++||.|++|+++|+++|++||++||++|++|++||++++|||||||||+++|||||+.|+++|+++|
T Consensus 462 ~~~~~~~p~~iiee~gL~qisD~~~l~~iv~evi~~np~~V~~~k~Gk~k~~g~lvGqVMK~tkGkAnp~~v~~iL~e~L 541 (544)
T PLN02751 462 LLAKGGTVKGLVEEKGLVQISDPAEIEAMVDKVLEENPKQLEQYRGGKTKLQGFFAGQVMKASKGKANPGLLNKILMEKL 541 (544)
T ss_pred HHhCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHCHHHHHHHHcccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hc
Q 043020 561 NA 562 (564)
Q Consensus 561 ~~ 562 (564)
++
T Consensus 542 ~~ 543 (544)
T PLN02751 542 NA 543 (544)
T ss_pred cc
Confidence 75
No 2
>TIGR00133 gatB glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit. The heterotrimer GatABC is responsible for transferring the NH2 group that converts Glu to Gln, or Asp to Asn after the Glu or Asp has been ligated to the tRNA for Gln or Asn, respectively. In Lactobacillus, GatABC is responsible only for tRNA(Gln). In the Archaea, GatABC is responsible only for tRNA(Asn), while GatDE is responsible for tRNA(Gln). In lineages that include Thermus, Chlamydia, or Acidithiobacillus, the GatABC complex catalyzes both.
Probab=100.00 E-value=9e-172 Score=1381.27 Aligned_cols=474 Identities=50% Similarity=0.856 Sum_probs=459.3
Q ss_pred cccceeeeeeeeeeccCCcccccCCCCCCCC-CCCCccCceecCCCCCCccCCHHHHHHHHHHHHHcCCccCC-Cccccc
Q 043020 71 KEYEAIIGIETHVQLSTLTKAFCTCPYNYGA-QPNTSVCPICMGLPGALPVVNSKVVEFAVKLGLALNCKLSF-NSKFDR 148 (564)
Q Consensus 71 ~~~e~vIGLEiHvQL~T~tKlFc~c~~~~~~-~PNt~vc~v~lg~PGtLP~lN~~av~~Ai~~~lALnc~I~~-~s~FdR 148 (564)
++|++||||||||||+|+|||||+|+++||+ +|||+|||||+|+|||||+||++||++|+++|+||||+|.+ .++|||
T Consensus 2 ~~~e~vIGlEiH~qL~t~tKlF~~~~~~~g~~~PNt~v~pvclg~PG~LPvlN~~av~~Ai~~~~aLnc~i~~~~s~FdR 81 (478)
T TIGR00133 2 IEYEAKIGLEIHVQLNTKTKLFCSCPNSFGSAPPNTNVCPVCLGLPGALPVLNEEAVKKAIKLALALNSQINQPISVFDR 81 (478)
T ss_pred CCceeEEEEEEEEEecCCcCccCCCCcccCCCCCCcccCccccCCCCCCCccCHHHHHHHHHHHHHcCCEecCcceEEec
Confidence 5899999999999999999999999999999 99999999999999999999999999999999999999655 999999
Q ss_pred cccCCCCCCCCceeccCCcceeeccEEEEecccccCCCeeeEEEeEeeeccccccccccCCCCCccccccccccceeeee
Q 043020 149 KQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFGITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDL 228 (564)
Q Consensus 149 K~YfYpDlPkGYQITQ~~~PI~~~G~i~~~~~~~~~~~~k~i~I~rihLEEDagK~~h~~~~~~~~~~~~~~~~~~lvD~ 228 (564)
||||||||||||||||++.|||.||+|++.+ +++.|+|+|+||||||||||++|..++++ ++|||
T Consensus 82 K~YfYpDlPkGYQITQ~~~Pi~~~G~l~i~~----~~~~k~I~I~rihLEEDagK~ih~~~~~~-----------slvD~ 146 (478)
T TIGR00133 82 KHYFYPDLPKGYQITQQDRPIAEGGKLEIEL----DGGEKRIGIERVHMEEDTGKSQHFGSDVQ-----------SLVDF 146 (478)
T ss_pred cccccCCCCCCccccccccceeCCeEEEEEe----cCceeEEeeEEEEeccccccccccCCCCc-----------eEEec
Confidence 9999999999999999999999999999975 24569999999999999999999633234 35999
Q ss_pred cCCCCceeEEeeCCCCCCHHHHHHHHHHHHHHHHHhCcccCCcCCCcccccccccccCCCCCCCccEEEEcCCCChHHHH
Q 043020 229 NRAGVPLLEIVSEPDMRTGLEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSIN 308 (564)
Q Consensus 229 NRaGvPLiEIVTePd~~s~~EA~~~~~~L~~ilr~lgvs~g~meeGslR~DvNVSv~~~g~~~~g~rvEIKNlnS~~~i~ 308 (564)
||||+|||||||+|||+||+||++|+++||++|||+|||||+||+|+||||||||||+.|+..+|+||||||||||++|+
T Consensus 147 NRaGvPLiEIVTePd~~s~eeA~~~~~~L~~ilr~~gvsdg~me~GslR~DvNVSir~~g~~~~g~RvEIKNlnS~~~i~ 226 (478)
T TIGR00133 147 NRSGAPLIEIVTKPDINSPKEARAFLKKLRQILRYLGISDGNLEEGSMRCDVNVSIRLKGQEHLGTRVEIKNINSFKGIE 226 (478)
T ss_pred cCCCCceEEEecCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcccCceeeeeeeecccCCCCCCcCeeEEeCcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccceeecCCCeeEeccCCCCCCCCCcCcCCCCCceecChHHHHHHHhcCCCCHHHH
Q 043020 309 RAIDFEIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILNKEYVDSIQSSLPELPEMK 388 (564)
Q Consensus 309 ~AI~~Ei~RQ~~ll~~g~~~~i~qETR~wd~~~~~T~~mR~Ke~~~DYRy~PEpdLpp~~l~~e~i~~i~~~lPElP~~~ 388 (564)
+||+||+.||+++|++|+ +|.||||+||+.+++|++||+||++.|||||||||||||.|+++|+++++++|||||+++
T Consensus 227 kAI~yE~~RQ~~ll~~G~--~i~qeTr~~d~~~~~T~~mR~Ke~a~DYRyfPEpDLppi~i~~~~i~~i~~~lPElP~~~ 304 (478)
T TIGR00133 227 KAIKYEIERQVKALIRGE--EVVQETRTFDEKSNITVSMRSKETSIDYRYFPEPDLPPINIDELLVKEVAGKLPELPSAK 304 (478)
T ss_pred HHHHHHHHHHHHHHHcCC--CeEeeeccccCCCCeEeecccCCCccccCCCCCCCCCceecCHHHHHHHHHhCCCCHHHH
Confidence 999999999999999996 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HcCCCHHHHHHHHhChhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCcccccCCHHHHHHHHHHHHcC
Q 043020 389 RRRYE-EMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELIASIKGA 467 (564)
Q Consensus 389 ~~Rl~-~ygLs~~dA~~L~~d~~la~yFE~~v~~~~~pk~vaNWi~~ell~~L~~~~~~i~~~~ispe~LaeLI~li~~g 467 (564)
++||. +||||.+||.+|++++.+++|||++++.+.+|+.+||||++|++++|++.+.++++++++|++|++||+++++|
T Consensus 305 ~~R~~~~ygls~~~a~~L~~~~~~~~~fe~~~~~~~~~k~~anwl~~el~~~l~~~~~~i~~~~l~p~~l~~Li~lv~~g 384 (478)
T TIGR00133 305 RIRLKKEYGLSEQDAKVLTSDLTLADYFEEVVKLIGDPKLAANWICIELLGVLNKLQISLAECGLKPSDLAELIKLIKEG 384 (478)
T ss_pred HHHHHHHcCCCHHHHHHHHcChHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHCCCCHhhcCCCHHHHHHHHHHHHcC
Confidence 99995 79999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHcCCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhChHHHHHhhcCccchhhHHHhHHhhhcCCCC
Q 043020 468 TISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKISKGKA 547 (564)
Q Consensus 468 ~IS~k~AK~il~~ll~~~~~~~~IIee~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk~Gk~k~~gflmGqVMk~tkGkA 547 (564)
+||.++||++|.+|++++++|.+||+++||.|++|+++|+++|++||++||++|++|++||+|++|||||||||+|+|||
T Consensus 385 ~Is~~~ak~vl~~~~~~~~~~~~ii~~~gl~~isd~~~l~~iv~evl~~np~~v~~~k~Gk~k~~~~lvGqvMk~t~GkA 464 (478)
T TIGR00133 385 KISGKSAKQLIEEMLENGGDPSKLIEELGLEQISDEKELIKIIEEVIKENPKEVEKYLSGKERALKFLVGQVMKRTRGRA 464 (478)
T ss_pred CCcHHHHHHHHHHHHhcCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHCHHHHHHHHcccHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhh
Q 043020 548 NPGLLNKILLEKLN 561 (564)
Q Consensus 548 dPk~V~~il~e~L~ 561 (564)
||++|+++|+++|+
T Consensus 465 ~p~~v~~~l~~~L~ 478 (478)
T TIGR00133 465 NPQLVNEILKEMLS 478 (478)
T ss_pred CHHHHHHHHHHHhC
Confidence 99999999999985
No 3
>COG0064 GatB Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-171 Score=1359.52 Aligned_cols=477 Identities=55% Similarity=0.946 Sum_probs=461.6
Q ss_pred hcccceeeeeeeeeeccCCcccccCCCCCCC-CCCCCccCceecCCCCCCccCCHHHHHHHHHHHHHcCCccCCCccccc
Q 043020 70 SKEYEAIIGIETHVQLSTLTKAFCTCPYNYG-AQPNTSVCPICMGLPGALPVVNSKVVEFAVKLGLALNCKLSFNSKFDR 148 (564)
Q Consensus 70 ~~~~e~vIGLEiHvQL~T~tKlFc~c~~~~~-~~PNt~vc~v~lg~PGtLP~lN~~av~~Ai~~~lALnc~I~~~s~FdR 148 (564)
.++|++||||||||||+|+|||||+|++.|+ +.|||||||||+|+||+||+||++||+.|+++|+||||+|+..+.|||
T Consensus 3 ~~~~e~vIGLEvHvqL~T~tKlFs~~~~~f~~a~PNtnv~pv~lglPGaLPvlN~~av~~ai~~~lAL~~~i~~~~~FdR 82 (483)
T COG0064 3 MMNFEVVIGLEVHVQLNTKTKLFSGCSTDFGGAEPNTNVCPVCLGLPGALPVLNKEAVEKAIKAGLALNCEINEKSVFDR 82 (483)
T ss_pred cccceeEeeeEEEEEeccCcCccCCCcccccCCCCCCCCCcccccCCCCccccCHHHHHHHHHHhhhhcceeccceeccc
Confidence 4589999999999999999999999999997 999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCceeccCCcceeeccEEEEecccccCCCeeeEEEeEeeeccccccccccCCCCCccccccccccceeeee
Q 043020 149 KQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFGITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDL 228 (564)
Q Consensus 149 K~YfYpDlPkGYQITQ~~~PI~~~G~i~~~~~~~~~~~~k~i~I~rihLEEDagK~~h~~~~~~~~~~~~~~~~~~lvD~ 228 (564)
|||||||||||||||||+.|||.||+|+|.++ ++..++|+|+|+||||||||++|.++..+| +|||
T Consensus 83 K~YFYPDlPkgyQIsQ~d~Pi~~~G~i~i~~~---~~~~k~i~I~r~HlEEDaGK~~h~~~~~~s-----------~vD~ 148 (483)
T COG0064 83 KNYFYPDLPKGYQISQFDKPIAENGYLEIELE---DGEEKRIGIERIHLEEDAGKLTHEGSAGYS-----------LVDY 148 (483)
T ss_pred CCCCCCCCCCCccccccccccccCcEEEEecC---CCceeeeccceeeccccCCcccccCCCCce-----------eeec
Confidence 99999999999999999999999999999864 356799999999999999999998754444 4999
Q ss_pred cCCCCceeEEeeCCCCCCHHHHHHHHHHHHHHHHHhCcccCCcCCCcccccccccccCCCCCCCccEEEEcCCCChHHHH
Q 043020 229 NRAGVPLLEIVSEPDMRTGLEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSIN 308 (564)
Q Consensus 229 NRaGvPLiEIVTePd~~s~~EA~~~~~~L~~ilr~lgvs~g~meeGslR~DvNVSv~~~g~~~~g~rvEIKNlnS~~~i~ 308 (564)
||||+|||||||+||||||+||++|+++||.|+||+|||||+||+||||||||||||+.|+..|||||||||||||++|+
T Consensus 149 NRaGvPLiEIVtePdirs~~eA~ayl~~Lr~ilrylgisd~~meeGsmR~DaNvSvr~~g~~~~GtrvEiKNiNS~~~v~ 228 (483)
T COG0064 149 NRAGVPLIEIVTEPDIRSPEEARAYLKKLRSILRYLGISDGNMEEGSMRCDANVSVRPKGQEEFGTRVEIKNLNSFRNVE 228 (483)
T ss_pred cccCCceeeeecccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcccCceEeeeeeeeccccccccCceeeeecCccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccceeecCCCeeEeccCCCCCCCCCcCcCCCCCceecChHHHHHHHhcCCCCHHHH
Q 043020 309 RAIDFEIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILNKEYVDSIQSSLPELPEMK 388 (564)
Q Consensus 309 ~AI~~Ei~RQ~~ll~~g~~~~i~qETR~wd~~~~~T~~mR~Ke~~~DYRy~PEpdLpp~~l~~e~i~~i~~~lPElP~~~ 388 (564)
+||+||+.||++++..|+ .|.||||+||+.+|.|++||+||++.||||||||||||+.++++|++++++.|||||+++
T Consensus 229 kAi~yE~~RQ~~~l~~g~--~i~qeTR~~d~~~g~T~~mR~KE~a~DYRYfpePDl~p~~is~~~i~~~~~~lPelP~~~ 306 (483)
T COG0064 229 KAIEYEIQRQIELLESGG--EIEQETRRFDEATGKTVSMRSKEEAEDYRYFPEPDLPPLEISDEWIEEVRATLPELPDEK 306 (483)
T ss_pred HHHHHHHHHHHHHHHcCC--CeeehccccccCCCeEeeccccccccccccCCCCCcCCccCCHHHHHHHHHhCCCCCHHH
Confidence 999999999999999996 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HcCCCHHHHHHHHhChhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCcccccCCHHHHHHHHHHHHcC
Q 043020 389 RRRYE-EMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELIASIKGA 467 (564)
Q Consensus 389 ~~Rl~-~ygLs~~dA~~L~~d~~la~yFE~~v~~~~~pk~vaNWi~~ell~~L~~~~~~i~~~~ispe~LaeLI~li~~g 467 (564)
++||. +||||.+||.+|+.|+.+++|||+++..+.+|+.++||+++||++.||+.++++.+++++|++|++|+++|++|
T Consensus 307 ~~r~~~~~gls~~dA~~L~~d~~la~~fe~~~~~~~~~k~~anW~~~el~~~Ln~~~~~i~~~~~~p~~la~Li~li~~g 386 (483)
T COG0064 307 RERYIKEYGLSEYDARVLTSDKELADYFEEAVKAGADAKLAANWLTNELLGLLNKAGITLEESPLTPEQLAELIKLIDEG 386 (483)
T ss_pred HHHHHHHcCCCHHHHHHHHcCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCChhhcCCCHHHHHHHHHHHHcC
Confidence 99996 89999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHc-CCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhChHHHHHhhcCccchhhHHHhHHhhhcCCC
Q 043020 468 TISGKIGKEILFELMAK-GGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKISKGK 546 (564)
Q Consensus 468 ~IS~k~AK~il~~ll~~-~~~~~~IIee~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk~Gk~k~~gflmGqVMk~tkGk 546 (564)
+||+++||+++..++.+ +++|.+||+++||.||+|+++|+++|++||++||+.|++|++||++++|||||||||+|+||
T Consensus 387 ~IS~k~AK~~v~~~~~~~~~~p~~iie~~gL~qisD~~~l~~~V~evia~Np~~ve~yk~GK~~~~~f~vGQVMk~T~Gk 466 (483)
T COG0064 387 TISGKIAKELVFEILANGGKDPEEIIEEKGLVQISDEGELEKIVDEVLAENPKAVEDYKSGKEKALGFLVGQVMKATKGK 466 (483)
T ss_pred CccHHHHHHHHHHHHHccCCCHHHHHHhcCccccCCHHHHHHHHHHHHHHCHHHHHHHhccHHHHHHHHHHHHHHHhcCC
Confidence 99999999966666654 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhhc
Q 043020 547 ANPGLLNKILLEKLNA 562 (564)
Q Consensus 547 AdPk~V~~il~e~L~~ 562 (564)
|||+.|+++|+++|+.
T Consensus 467 AnP~~v~~ll~~~L~~ 482 (483)
T COG0064 467 ANPQQVNELLKEKLGK 482 (483)
T ss_pred CCHHHHHHHHHHHhcc
Confidence 9999999999999974
No 4
>PRK05477 gatB aspartyl/glutamyl-tRNA amidotransferase subunit B; Validated
Probab=100.00 E-value=2.7e-170 Score=1367.18 Aligned_cols=472 Identities=54% Similarity=0.954 Sum_probs=458.6
Q ss_pred hcccceeeeeeeeeeccCCcccccCCCCCCCCCCCCccCceecCCCCCCccCCHHHHHHHHHHHHHcCCccCCCcccccc
Q 043020 70 SKEYEAIIGIETHVQLSTLTKAFCTCPYNYGAQPNTSVCPICMGLPGALPVVNSKVVEFAVKLGLALNCKLSFNSKFDRK 149 (564)
Q Consensus 70 ~~~~e~vIGLEiHvQL~T~tKlFc~c~~~~~~~PNt~vc~v~lg~PGtLP~lN~~av~~Ai~~~lALnc~I~~~s~FdRK 149 (564)
.++|++|||||||+||+|+|||||+|++.||++|||+|||||+|+||+||+||++||++|+++|+||||+|++.++||||
T Consensus 2 ~~~~e~vIGLEiH~qL~T~tKlFc~c~~~~~~~PNt~vcpv~lg~PG~lP~lN~~av~~Ai~~alaLnc~I~~~~~fdRK 81 (474)
T PRK05477 2 MMNFEVVIGLEVHVQLNTKSKIFSGCSTDFGAEPNTNVCPVCLGLPGALPVLNKEAVEYAIKAGLALNCEIAKRSRFDRK 81 (474)
T ss_pred CCCCceEEEEEEEEEcCCCCCccCCCCcccCCCCCCCcCccccCCCCCCCccCHHHHHHHHHHHHHcCCCCCcccEEecc
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCceeccCCcceeeccEEEEecccccCCCeeeEEEeEeeeccccccccccCCCCCccccccccccceeeeec
Q 043020 150 QYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFGITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLN 229 (564)
Q Consensus 150 ~YfYpDlPkGYQITQ~~~PI~~~G~i~~~~~~~~~~~~k~i~I~rihLEEDagK~~h~~~~~~~~~~~~~~~~~~lvD~N 229 (564)
|||||||||||||||++.|||.||+|++.. + .++|+|+||||||||||++|+..+++ ++||||
T Consensus 82 ~YfYpDlPkGYQITQ~~~PI~~~G~l~i~~-----~-~~~i~I~rihLEEDagK~~h~~~~~~-----------slvD~N 144 (474)
T PRK05477 82 NYFYPDLPKGYQISQYDEPIAENGYLEIEL-----G-EKRIGIERIHLEEDAGKSVHDQGAGY-----------SLVDYN 144 (474)
T ss_pred ccccCCCCCCcccccccCceecCcEEEEec-----c-CceeceEEEEecccccccccccCCCc-----------eEEecc
Confidence 999999999999999999999999999963 1 58899999999999999999733333 459999
Q ss_pred CCCCceeEEeeCCCCCCHHHHHHHHHHHHHHHHHhCcccCCcCCCcccccccccccCCCCCCCccEEEEcCCCChHHHHH
Q 043020 230 RAGVPLLEIVSEPDMRTGLEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINR 309 (564)
Q Consensus 230 RaGvPLiEIVTePd~~s~~EA~~~~~~L~~ilr~lgvs~g~meeGslR~DvNVSv~~~g~~~~g~rvEIKNlnS~~~i~~ 309 (564)
|||+|||||||+|||+||+||++|+++||++|||+|+|||+||+|+||||||||||+.|+..|||||||||||||++|++
T Consensus 145 RaGiPLiEIVTePd~~s~~eA~~~~~~L~~ilr~~g~sd~~me~GslR~DvNVSir~~g~~~~G~RvEIKNlnS~~~i~~ 224 (474)
T PRK05477 145 RAGVPLIEIVSEPDMRSPEEARAYLKKLRSILRYLGISDGNMEEGSLRCDANVSVRPKGQEEFGTRVEIKNLNSFRFVEK 224 (474)
T ss_pred CCCCceEEEeccCCCCCHHHHHHHHHHHHHHHHHhCCCcCccccCceEEeeeEEeccCCcccCCceeEEeccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCccccccceeecCCCeeEeccCCCCCCCCCcCcCCCCCceecChHHHHHHHhcCCCCHHHHH
Q 043020 310 AIDFEIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILNKEYVDSIQSSLPELPEMKR 389 (564)
Q Consensus 310 AI~~Ei~RQ~~ll~~g~~~~i~qETR~wd~~~~~T~~mR~Ke~~~DYRy~PEpdLpp~~l~~e~i~~i~~~lPElP~~~~ 389 (564)
||+||+.||.++++.|+ .|.||||+||+.+|+|++||+||++.|||||||||||||.|+++|+++++++|||||++++
T Consensus 225 Ai~yEi~RQ~~ll~~G~--~v~qETR~~d~~~g~T~~mR~Ke~a~DYRyfPepDlppi~i~~~~i~~i~~~lPelP~~~~ 302 (474)
T PRK05477 225 AIEYEIERQIEILESGG--EVVQETRLFDEDKGETRSMRSKEEAHDYRYFPEPDLPPLEISDEWIEEIRAELPELPDAKR 302 (474)
T ss_pred HHHHHHHHHHHHHHcCC--CeecccCCcCCCCCeeeecccCCcccccCCCCCCCCCceecCHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999996 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-HcCCCHHHHHHHHhChhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCcccccCCHHHHHHHHHHHHcCc
Q 043020 390 RRYE-EMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELIASIKGAT 468 (564)
Q Consensus 390 ~Rl~-~ygLs~~dA~~L~~d~~la~yFE~~v~~~~~pk~vaNWi~~ell~~L~~~~~~i~~~~ispe~LaeLI~li~~g~ 468 (564)
+||. +||||.++|.+|++++.+++|||++++.+.+|+.+||||++++++.|++.++++++++++|++|++|+.++++|+
T Consensus 303 ~rl~~~ygls~~~a~~L~~~~~~~~~fe~~~~~~~~~k~~anwl~~el~~~l~~~~~~~~~~~i~~~~l~~Li~lv~~g~ 382 (474)
T PRK05477 303 ARFVEEYGLSEYDARVLTSDKELADYFEAVVAAGADAKLAANWLMGELLGLLNEEGIEIEESPITPEQLAELIKLIDDGT 382 (474)
T ss_pred HHHHHHcCCCHHHHHHHHcChHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHCCCChhhcCCCHHHHHHHHHHHHcCC
Confidence 9996 699999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHcCCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhChHHHHHhhcCccchhhHHHhHHhhhcCCCCC
Q 043020 469 ISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKISKGKAN 548 (564)
Q Consensus 469 IS~k~AK~il~~ll~~~~~~~~IIee~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk~Gk~k~~gflmGqVMk~tkGkAd 548 (564)
||.++||++|.+|++++++|.++|+++||.|++|+++|+++|++||++||++|++|++||++++|||||||||+|+||||
T Consensus 383 Is~~~ak~vl~~~~~~~~~~~~ii~~~gl~~isd~~~l~~iv~evi~~np~~v~~~~~Gk~~~~~~lvG~vMk~t~GkAd 462 (474)
T PRK05477 383 ISGKIAKEVFEEMLETGGDPDEIVEEKGLKQISDEGALEAIVDEVLAANPKAVEDYKAGKEKALGFLVGQVMKATKGKAN 462 (474)
T ss_pred ccHHHHHHHHHHHHhcCCCHHHHHHHcCCcccCCHHHHHHHHHHHHHHCHHHHHHHHcccHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHh
Q 043020 549 PGLLNKILLEKL 560 (564)
Q Consensus 549 Pk~V~~il~e~L 560 (564)
|++|+++|+++|
T Consensus 463 p~~v~~ll~e~l 474 (474)
T PRK05477 463 PKLVNELLKEKL 474 (474)
T ss_pred HHHHHHHHHHhC
Confidence 999999999886
No 5
>KOG2438 consensus Glutamyl-tRNA amidotransferase subunit B [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-155 Score=1204.69 Aligned_cols=480 Identities=48% Similarity=0.769 Sum_probs=456.9
Q ss_pred hhhhhcccceeeeeeeeeeccCCcccccCCCCCCCCCCCCccCceecCCCCCCccCCHHHHHHHHHHHHHcCCccCCCcc
Q 043020 66 LDRISKEYEAIIGIETHVQLSTLTKAFCTCPYNYGAQPNTSVCPICMGLPGALPVVNSKVVEFAVKLGLALNCKLSFNSK 145 (564)
Q Consensus 66 ~~~~~~~~e~vIGLEiHvQL~T~tKlFc~c~~~~~~~PNt~vc~v~lg~PGtLP~lN~~av~~Ai~~~lALnc~I~~~s~ 145 (564)
.+...-+|.+|||||||+||+|.+||||+|.++|+++|||+||+||+++||||||||++||++|+++||||||+++..|.
T Consensus 16 ~~~~~r~waaviGlEiH~Ql~t~~KlFs~s~~~~~a~pNt~v~yfd~slPGtlPVLN~~~vefavk~~LALnc~vn~~s~ 95 (505)
T KOG2438|consen 16 HGMPFRKWAAVIGLEIHAQLATVSKLFSGSKVNFGAPPNTSVSYFDASLPGTLPVLNREAVEFAVKLSLALNCEVNNVSK 95 (505)
T ss_pred cCCchhhhhhhhcceehhhHhhhhhhhcccCCCCCCCCCccceeeeccCCCcccccCHHHHHHHHHHHhhhccchhhhhh
Confidence 34445699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCceeccCCcceeeccEEEEecccccCC-CeeeEEEeEeeeccccccccccCCCCCccccccccccce
Q 043020 146 FDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGG-GHRRFGITRVHMEEDAGKLLHADDGEYSQEITFPIIYAL 224 (564)
Q Consensus 146 FdRK~YfYpDlPkGYQITQ~~~PI~~~G~i~~~~~~~~~~-~~k~i~I~rihLEEDagK~~h~~~~~~~~~~~~~~~~~~ 224 (564)
||||||||||||+||||||++.|||.||.+.+.. +.++ ..|+|+|.||||||||||++|++...++
T Consensus 96 FDRKhYFY~DlP~GYQitQ~~~pia~~G~~~l~~--~~~~v~~k~~~i~qiqlEqDtgKst~~d~~~~s----------- 162 (505)
T KOG2438|consen 96 FDRKHYFYPDLPAGYQITQQRIPIARNGFIPLSA--GLDNVPDKTIGILQIQLEQDTGKSTHDDAPSRS----------- 162 (505)
T ss_pred ccccccccCCCCCCceeeeeecccccCCcccccc--ccCCCCcceeceEEEEeeccccccccccCCCce-----------
Confidence 9999999999999999999999999999877754 3333 5699999999999999999998766554
Q ss_pred eeeecCCCCceeEEeeCCCCCCHHHHHHHHHHHHHHHHHhCcccCCcCCCcccccccccccCCCCCCCccEEEEcCCCCh
Q 043020 225 QVDLNRAGVPLLEIVSEPDMRTGLEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSF 304 (564)
Q Consensus 225 lvD~NRaGvPLiEIVTePd~~s~~EA~~~~~~L~~ilr~lgvs~g~meeGslR~DvNVSv~~~g~~~~g~rvEIKNlnS~ 304 (564)
||||||||+||+||||+|||++++||++|+++||.|+||+|||+|+||+|+|||||||||++.|+ ++|||||||||||+
T Consensus 163 LvDlNRAGvpLlEiVt~Pdf~~~~eaa~fv~elqlIlr~lgis~g~meeG~lRvDvNiSI~~~g~-~lG~RvElKNLnsi 241 (505)
T KOG2438|consen 163 LVDLNRAGVPLLEIVTKPDFSDGIEAAAFVKELQLILRHLGISSGNMEEGALRVDVNISIAPDGS-ELGTRVELKNLNSI 241 (505)
T ss_pred eeeccccCCceEEEecCcccccHHHHHHHHHHHHHHHHHhcccccchhcCceEEeeeeEecCCCc-cceeeeeeccchhH
Confidence 59999999999999999999999999999999999999999999999999999999999999987 59999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCccccccceeecCCCeeEeccCCCCCCCCCcCcCCCCCceecChHHHHHHHhcCCCC
Q 043020 305 SSINRAIDFEIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILNKEYVDSIQSSLPEL 384 (564)
Q Consensus 305 ~~i~~AI~~Ei~RQ~~ll~~g~~~~i~qETR~wd~~~~~T~~mR~Ke~~~DYRy~PEpdLpp~~l~~e~i~~i~~~lPEl 384 (564)
|+|.+||+|||.||++++++|+ .|..|||+||..+|+|++||+||+..||||||||||||+.|..+||++|+++||||
T Consensus 242 rsI~~AI~yEi~RQvel~~nGg--~i~nETR~wd~~~~rTvsmRdKEt~~DYRfmPEPnLPpl~L~~~~v~~Vre~LPeL 319 (505)
T KOG2438|consen 242 RSISNAIDYEIQRQVELLNNGG--AIQNETRGWDSEGGRTVSMRDKETLQDYRFMPEPNLPPLILHGKYVDSVREELPEL 319 (505)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC--ccccccccccccCCceEeecccccccceeccCCCCCCCeeecHHHHHHHHHhcccC
Confidence 9999999999999999999996 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHcCCCHHHHHHHHhChhhHHHHH-HH-HHhc-C--CHHHHHHHHHHHHHHHHHhcCCCcccccCCHHHHH
Q 043020 385 PEMKRRRY-EEMGLSMQDVLFLANDINVARFFD-AT-IEKG-A--DVKLAANWIMGDIAAYMKNEKLTINEIKLSAAELA 458 (564)
Q Consensus 385 P~~~~~Rl-~~ygLs~~dA~~L~~d~~la~yFE-~~-v~~~-~--~pk~vaNWi~~ell~~L~~~~~~i~~~~ispe~La 458 (564)
|++.|++| ++|||+.++|.+|+++.++++||. .+ +..+ + .|+.+++||+++++++|+...+...+++++|.+|+
T Consensus 320 P~~~~~~L~e~~gl~~k~a~~L~~~~~~~~~~~d~v~i~k~~ae~~~k~~~~Wi~~~~~g~lrq~~ls~~~~~~~p~~la 399 (505)
T KOG2438|consen 320 PDATREKLVEQYGLSAKDAVTLANEVELLEFYKDSVRIIKYKAETTPKLITYWIKEEFLGYLRQIALSPNQSIVTPRQLA 399 (505)
T ss_pred cHHHHHHHHHhhccchhhhhhhhcchhHHHHHhhhhhhhhhcccccccchHHHHHHHHHHHHhhccCCccccccChHHHH
Confidence 99999998 479999999999999999999994 44 3222 2 59999999999999999999999999999999999
Q ss_pred HHHHHHHcCccchHHHHHHHHHHHHcCC--CHHHHHHhcCCCCCCCHHHHHHHHHHHHHhChHHHHHhhcCccchhhHHH
Q 043020 459 ELIASIKGATISGKIGKEILFELMAKGG--TVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFA 536 (564)
Q Consensus 459 eLI~li~~g~IS~k~AK~il~~ll~~~~--~~~~IIee~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk~Gk~k~~gflm 536 (564)
+|++++.+++||+..||++|.+++++++ ++..+|+++.+++|.|++||+++|+.||++||++|++|++||+|++++|+
T Consensus 400 ~ll~ll~~~~Is~~~ak~ll~~l~~~~~~~~~s~LIeek~l~~I~dp~eIe~lv~~vm~~h~k~ve~~rsGk~k~~~~l~ 479 (505)
T KOG2438|consen 400 DLLKLLSEETISALSAKQLLRHLLKNPGVMTVSILIEEKRLWQIRDPAEIEELVRSVMEKHPKQVEQLRSGKTKSIKRLI 479 (505)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHhCCCcCCHHHHHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 9999999999999999999999998775 89999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhcCCCCChHHHHHHHHHHhh
Q 043020 537 GQVMKISKGKANPGLLNKILLEKLN 561 (564)
Q Consensus 537 GqVMk~tkGkAdPk~V~~il~e~L~ 561 (564)
|+|||.++|||||+.++++|+++|+
T Consensus 480 G~vmk~s~g~a~p~~le~~l~~~L~ 504 (505)
T KOG2438|consen 480 GLVMKSSQGRANPKDLEKILEELLN 504 (505)
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999986
No 6
>PRK04028 glutamyl-tRNA(Gln) amidotransferase subunit E; Validated
Probab=100.00 E-value=3.2e-139 Score=1153.10 Aligned_cols=445 Identities=29% Similarity=0.458 Sum_probs=415.9
Q ss_pred cceeeeeeeeeeccCCcccccCCCCCCCC-C-------------------------------------CCCccCceecC-
Q 043020 73 YEAIIGIETHVQLSTLTKAFCTCPYNYGA-Q-------------------------------------PNTSVCPICMG- 113 (564)
Q Consensus 73 ~e~vIGLEiHvQL~T~tKlFc~c~~~~~~-~-------------------------------------PNt~vc~v~lg- 113 (564)
.-++||||||+||+|+|||||+|+++||+ + |||++||||+|
T Consensus 9 ~~~~iGlEvH~qL~t~~KlFc~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~c~v~~~~ 88 (630)
T PRK04028 9 LGLKVGLEIHQQLDTKRKLFCNCPTELRDDEPDFEFERYLRPTQSELGEIDRAALEESKKGRKFIYEAYNDTTCLVEADE 88 (630)
T ss_pred hCcEEeEEEEEecCCCCCccCCCCccccCcccccchhhhcccchhhcccchHHHHHHhhhcccccccCCCCCcCccccCC
Confidence 34789999999999999999999999997 6 99999999999
Q ss_pred -CCCCCccCCHHHHHHHHHHHHHcCCccCCCccccccccCCCCCCCCceeccCCcceeeccEEEEecccccCCCeeeEEE
Q 043020 114 -LPGALPVVNSKVVEFAVKLGLALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFGI 192 (564)
Q Consensus 114 -~PGtLP~lN~~av~~Ai~~~lALnc~I~~~s~FdRK~YfYpDlPkGYQITQ~~~PI~~~G~i~~~~~~~~~~~~k~i~I 192 (564)
+|| +||++||++|+++|+||||+|++.+.|||||||||||||||||||+ ||.||+|++. .++|+|
T Consensus 89 ~~P~---~lN~~av~~ai~~~~ALnc~i~~~~~f~RK~yfypdlpkgyQiTq~---i~~~G~l~~~--------~~~v~I 154 (630)
T PRK04028 89 EPPH---ELNEEALDIALAIAKLLNMKPVDEIHVMRKIVIDGSNTSGFQRTAL---VALGGYIETS--------EGKVGI 154 (630)
T ss_pred CCCC---CCCHHHHHHHHHHHHHcCCCCCccceeccccccCCCCCcchhhhhH---hhCCeEEEEe--------cceece
Confidence 577 8999999999999999999999999999999999999999999999 9999999985 168999
Q ss_pred eEeeeccccccccccCCCCCccccccccccceeeeecCCCCceeEEeeCCCCCCHHHHHHHHHHHHHHHHHhCcccCCcC
Q 043020 193 TRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNRAGVPLLEIVSEPDMRTGLEAAEYAAELQRLVRYLGVSNGNMQ 272 (564)
Q Consensus 193 ~rihLEEDagK~~h~~~~~~~~~~~~~~~~~~lvD~NRaGvPLiEIVTePd~~s~~EA~~~~~~L~~ilr~lgvs~g~me 272 (564)
+||||||||||++|.. ++++ +|||||||+|||||||+|||+||+||++|+++||++|+|+|+| +||
T Consensus 155 ~~ihlEEDagk~~~~~-~~~~-----------~~d~nR~GiPLiEIvtePd~~s~~ea~~~~~~l~~il~~~g~~--~~e 220 (630)
T PRK04028 155 ETICLEEDAARKIEEK-GDGV-----------VYSLDRLGIPLIEISTAPDIHSPEQAKEVALKIGMLLRSTGKV--KRG 220 (630)
T ss_pred EEEEecccccccccCC-CCce-----------EEeccCCCCCeEEEecCCCCCCHHHHHHHHHHHHHHHHHhCCC--Ccc
Confidence 9999999999999963 3333 5999999999999999999999999999999999999999986 899
Q ss_pred CCcccccccccccCCCCCCCccEEEEcCCCChHHHHHHHHHHHHHHHHHHH-------cC--------------------
Q 043020 273 EGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINRAIDFEIARQALLYS-------QG-------------------- 325 (564)
Q Consensus 273 eGslR~DvNVSv~~~g~~~~g~rvEIKNlnS~~~i~~AI~~Ei~RQ~~ll~-------~g-------------------- 325 (564)
+|||||||||||| +|+||||||||||++|++||+||++||++++. -|
T Consensus 221 ~GslR~DvNvSv~------~g~rvEiKnlns~~~v~~ai~yE~~RQ~~lltY~EAM~rYGSDKPDeivDVTd~f~~t~fk 294 (630)
T PRK04028 221 LGTIRQDVNVSIA------GGARVEIKGVQKLDLIPKVVEYEVQRQLNLLKIRDELKERGASVEDEIVDVTELFKDTKSK 294 (630)
T ss_pred CCCeeEEEEEecc------CCceeeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccceehHHHhccCCch
Confidence 9999999999998 79999999999999999999999999999887 22
Q ss_pred ---------CC----------C----------------------------------------------------------
Q 043020 326 ---------KA----------D---------------------------------------------------------- 328 (564)
Q Consensus 326 ---------~~----------~---------------------------------------------------------- 328 (564)
+. +
T Consensus 295 if~~~ik~gg~VkaI~vp~~~~~l~~e~~~srr~~d~l~e~aK~~GakGL~~~~el~~~~is~e~l~~L~e~l~ak~GDl 374 (630)
T PRK04028 295 IIKKALKKGGKVLAIKLPGFKGLLGREIQPGRRLGTELADYAKAWGVGGIFHTDELPAYGITEEEVEALREALGAGENDA 374 (630)
T ss_pred hhhhhhcCCCeEEEEEcCCcccccccccccCHHHHHHHHHHHHHcCCCceEEecccccCCCCHHHHHHHHHHhCCCCCCE
Confidence 10 0
Q ss_pred ---------------------------ccccccceeecCCCeeEeccCCCCCCCCCcCcCCCCCceecChHHHHHHHhcC
Q 043020 329 ---------------------------QIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILNKEYVDSIQSSL 381 (564)
Q Consensus 329 ---------------------------~i~qETR~wd~~~~~T~~mR~Ke~~~DYRy~PEpdLpp~~l~~e~i~~i~~~l 381 (564)
-|.+|||+||+ +|+|++||+||++ ||||||||||||+|+++|+++++++|
T Consensus 375 l~~~a~k~~~v~~~LG~LR~~la~~l~~v~~eTr~~~~-~g~T~~mR~ke~a--~Ry~PepDlppi~i~~~~i~~i~~~~ 451 (630)
T PRK04028 375 FILVADEEEKAEKALEAVIERAKEALEGVPEETRGALP-DGTTRYLRPLPGA--ARMYPETDIPPIRITEELLEKIKKNL 451 (630)
T ss_pred EEEecCcHHHHHHHHHHHHHHHHHHhCCCcccccccCC-CCCEeeCCCCCCc--cccCCCCCcCceecCHHHHHHHHHhC
Confidence 01239999999 8999999999999 59999999999999999999999999
Q ss_pred CCCHHHHHHHHH-HcCCCHHHHHHHHhChhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCcccccCCHHHHHHH
Q 043020 382 PELPEMKRRRYE-EMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAEL 460 (564)
Q Consensus 382 PElP~~~~~Rl~-~ygLs~~dA~~L~~d~~la~yFE~~v~~~~~pk~vaNWi~~ell~~L~~~~~~i~~~~ispe~LaeL 460 (564)
||+|+++++||. +||||.++|.+|++++. ++||+++++.+.+|+.+||||+++ ++.|++.++.+.+ ++|++|++|
T Consensus 452 Pe~p~~~~~r~~~~ygls~~~a~~L~~~~~-~~~f~~~~~~~~~~~~~anwl~~~-~~~l~~~~~~~~~--i~~~~l~~l 527 (630)
T PRK04028 452 PELPEEKVERLIKEYGLSEELAEQLAYSER-LDLFEELVKKGVDPTLIASTLENT-LKELRREGVDVEN--ITDEHIEEV 527 (630)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHCCch-HHHHHHHHHhCCCHHHHHHHHHHH-HHHHHhCCCCccc--CCHHHHHHH
Confidence 999999999996 69999999999999998 899999998888999999999995 6999999998875 899999999
Q ss_pred HHHHHcCccchHHHHHHHHHHHHc-CCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhChHHHHHhhcCccchhhHHHhHH
Q 043020 461 IASIKGATISGKIGKEILFELMAK-GGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQV 539 (564)
Q Consensus 461 I~li~~g~IS~k~AK~il~~ll~~-~~~~~~IIee~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk~Gk~k~~gflmGqV 539 (564)
++++++|+||.++||++|.+|+++ +++|.+||++++|.|+|| ++|+++|++||++||++|++ |++|++|||||||
T Consensus 528 ~~~~~~~~is~~~ak~v~~~~~~~~~~~~~~IIee~gl~qiSD-~eL~~iV~evIaenpk~V~~---gk~K~~G~lmGqV 603 (630)
T PRK04028 528 FKLVSEGKIAKEAIEEILKELAENPGKSAEEAAEELGLKGLSE-EEVEKIIDEIVEENIDFVKE---KGMGAFGPLMGEV 603 (630)
T ss_pred HHHHHcCCccHHHHHHHHHHHHhcCCCCHHHHHHHhCcccCCH-HHHHHHHHHHHHhChHhHhc---cCHhHHHHHHHHH
Confidence 999999999999999999999975 789999999999999997 78999999999999999987 6799999999999
Q ss_pred hhhcCCCCChHHHHHHHHHHhhc
Q 043020 540 MKISKGKANPGLLNKILLEKLNA 562 (564)
Q Consensus 540 Mk~tkGkAdPk~V~~il~e~L~~ 562 (564)
||+++|||||+.|+++|+++|++
T Consensus 604 Mk~tkGkAdp~~V~~llke~L~~ 626 (630)
T PRK04028 604 MAELRGKADGKLVSEILREKLKE 626 (630)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999975
No 7
>TIGR00134 gatE_arch glutamyl-tRNA(Gln) amidotransferase, subunit E. The Archaea have an Asp-tRNA(Asn) amidotransferase instead of an Asp--tRNA ligase, but the genes have not been identified. It is likely that this protein replaces gatB in Asp-tRNA(Asn) amidotransferase but that both enzymes share gatA.
Probab=100.00 E-value=9e-134 Score=1109.59 Aligned_cols=452 Identities=29% Similarity=0.438 Sum_probs=412.7
Q ss_pred ccccee---eeeeeeeeccCCcccccCCCCCC-CCCCC-------------------------------------CccCc
Q 043020 71 KEYEAI---IGIETHVQLSTLTKAFCTCPYNY-GAQPN-------------------------------------TSVCP 109 (564)
Q Consensus 71 ~~~e~v---IGLEiHvQL~T~tKlFc~c~~~~-~~~PN-------------------------------------t~vc~ 109 (564)
++|+.+ ||||||+||+|+|||||+|++.| +++|| +++||
T Consensus 1 ~~y~~~gl~iGLEiH~qL~T~~KlFc~c~~~~~~~~p~~~~~r~lr~~~se~g~~d~aa~~e~~~~~~~~y~~~~~~~c~ 80 (620)
T TIGR00134 1 MDYEKVGLKVGLEIHQQLDTKSKLFCPCPTELRDSEPDHEIVRNLRPTQSELGEFDRAAFEEAMRKLHFIYENYHDTTCL 80 (620)
T ss_pred CChHHhCeeeeEEEEEEcCCCCCccCCCCcccccCCCcchhhhccccchhhcccccHHHHHHHhhcccceecccCCcccc
Confidence 368887 99999999999999999999999 68997 99999
Q ss_pred eecCCCCCCccCCHHHHHHHHHHHHHcCCccCCCccccccccCCCCCCCCceeccCCcceeeccEEEEecccccCCCeee
Q 043020 110 ICMGLPGALPVVNSKVVEFAVKLGLALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRR 189 (564)
Q Consensus 110 v~lg~PGtLP~lN~~av~~Ai~~~lALnc~I~~~s~FdRK~YfYpDlPkGYQITQ~~~PI~~~G~i~~~~~~~~~~~~k~ 189 (564)
||+|+||++ +||++||+.|+++|+||||+|++.++|||||||||||||||||||+ ||.||+|++. .++
T Consensus 81 V~~~~~~~~-~lN~~av~~ai~~a~aln~~i~~~~~f~RK~yfy~d~p~GyQiTq~---i~~~G~l~~~--------~~~ 148 (620)
T TIGR00134 81 VEADEEPPH-PLNPEALEIAVTVALLLNMRVVDEFHTMRKIVIDGSNTGGFQRTGL---VATDGHLETP--------QGT 148 (620)
T ss_pred ccCCCCCCC-CcCHHHHHHHHHHHHHcCCCCCccceeccccccCCCCCcchhHhhH---hhCCeEEEec--------Cce
Confidence 999999999 5999999999999999999999999999999999999999999999 9999999984 268
Q ss_pred EEEeEeeeccccccccccCCCCCccccccccccceeeeecCCCCceeEEeeCCCCCCHHHHHHHHHHHHHHHHHhCcccC
Q 043020 190 FGITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNRAGVPLLEIVSEPDMRTGLEAAEYAAELQRLVRYLGVSNG 269 (564)
Q Consensus 190 i~I~rihLEEDagK~~h~~~~~~~~~~~~~~~~~~lvD~NRaGvPLiEIVTePd~~s~~EA~~~~~~L~~ilr~lgvs~g 269 (564)
|+|+||||||||||++|+. ++++ +|||||||+|||||||+|||+||+||++|+++|+++|||+| ++
T Consensus 149 v~I~~i~lEEDa~k~i~~~-~~~~-----------~~dlnR~GiPLiEIvTePdi~sp~ea~~~~~~l~~ilr~~g--~~ 214 (620)
T TIGR00134 149 VGIENLCLEEDAARKIEDT-GDGV-----------VYRLDRLGIPLVEITTDPDISDPQMAKEVAYRIGQILRSTG--KV 214 (620)
T ss_pred eceEEEeecccccccccCC-CCce-----------EEecccCCCceEEEecCCCCCCHHHHHHHHHHHHHHHHHhC--CC
Confidence 9999999999999999963 3343 59999999999999999999999999999999999999999 55
Q ss_pred CcCCCcccccccccccCCCCCCCccEEEEcCCCChHHHHHHHHHHHHHHHHHHH-------cCCC--Ccccccc------
Q 043020 270 NMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINRAIDFEIARQALLYS-------QGKA--DQIVQET------ 334 (564)
Q Consensus 270 ~meeGslR~DvNVSv~~~g~~~~g~rvEIKNlnS~~~i~~AI~~Ei~RQ~~ll~-------~g~~--~~i~qET------ 334 (564)
+|++|+|||||||||+ +|+||||||||||++|++||+||+.||+++++ .|.. .++...|
T Consensus 215 ~~~~GsiR~DvNvSi~------~G~rvEIKnvns~~~i~~ai~~E~~RQ~~ll~~~~~l~~~g~~v~~eI~DVTdlF~~t 288 (620)
T TIGR00134 215 KRGLGTIRQDLNISIR------DGARVEVKGVQDLDLIPKIVEREVKRQLNLLKIRDELQERGAVVEEKIFDVTEVFADT 288 (620)
T ss_pred CcCCCCeeeeEEEecc------CCceeeecCCCcHHHHHHHHHHHHHHHHHHHHhhhhHhhcCCccccccccccHhhccC
Confidence 7789999999999998 48999999999999999999999999999999 6641 1123333
Q ss_pred ----------------ceee-----------------------------------------------------cCCCeeE
Q 043020 335 ----------------RLWE-----------------------------------------------------EGSQKTV 345 (564)
Q Consensus 335 ----------------R~wd-----------------------------------------------------~~~~~T~ 345 (564)
+.|. .+.|-.+
T Consensus 289 ~fkvf~~~l~VkaI~vpg~~~lsrkei~pgrr~gdeL~e~aK~~GakGL~~~delp~~~it~eev~~L~e~l~ak~GD~l 368 (620)
T TIGR00134 289 KSKIISNAESVKAVLLRGFDGLVGVEIQPGRRLGTEFADYAKKRGVGGIFHTDELPAYGITEEEVRGLRDAVGAEQGDAV 368 (620)
T ss_pred CchhccccceEEEEEcCCCcccchhhhcccccchHHHHHHHHHcCCCceEeecccccCCCCHHHHHHHHHHhCCCCCCEE
Confidence 2221 1123445
Q ss_pred ec-----------------cCCC---------------CCCC--------CCcCcCCCCCceecChHHHHHHHhcCCCCH
Q 043020 346 TM-----------------RKKE---------------GLAD--------YRYFPEPDLPEVILNKEYVDSIQSSLPELP 385 (564)
Q Consensus 346 ~m-----------------R~Ke---------------~~~D--------YRy~PEpdLpp~~l~~e~i~~i~~~lPElP 385 (564)
.+ |+|| ++.| ||||||||||||.|+++|+++++++|||||
T Consensus 369 l~vAdk~~~v~~aL~~v~~R~ke~~~gvp~etr~a~~~g~~dy~rp~pg~yRy~PEpDlppi~i~~~~i~~i~~~lPelp 448 (620)
T TIGR00134 369 VMVAHERVTVERALREVIERAKMALQGVPEETRKALEDGNTQYLRPLPGAARMYPETDIPPFRIEDELLEGIRRNLPELP 448 (620)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhhhhccCchhhhccCCCCcccccccCCCCcCCCCCCCcCceecCHHHHHHHHHhCCCCH
Confidence 56 9998 4788 599999999999999999999999999999
Q ss_pred HHHHHHHH-HcCCCHHHHHHHHhChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCcccccCCHHHHHHHHHH
Q 043020 386 EMKRRRYE-EMGLSMQDVLFLANDINVARFFDATIEK-GADVKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELIAS 463 (564)
Q Consensus 386 ~~~~~Rl~-~ygLs~~dA~~L~~d~~la~yFE~~v~~-~~~pk~vaNWi~~ell~~L~~~~~~i~~~~ispe~LaeLI~l 463 (564)
+++++||. +||||.++|.+|+++. .++|||++++. +.+|+.+||||+++ ++.|++.++++++ ++|++|++|+++
T Consensus 449 ~~~~~r~~~~ygls~~~A~~l~~~~-~~~~fe~~~~~~~~~~~~~an~l~~~-~~~l~~~~~~~~~--~~~~~l~~l~~~ 524 (620)
T TIGR00134 449 EEKKERIMREYGLSEDLASQLVKSN-YVDEFEALTEKFRVDPTVIASLLAYT-LRELRREGHDIDG--LELRHLRDAIKL 524 (620)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHhch-HHHHHHHHHHhcCCCHHHHHHHHHHH-HHHHHhCCCCccc--CCHHHHHHHHHH
Confidence 99999996 7999999999999997 68999999875 67999999999999 7999999998875 789999999999
Q ss_pred HHcCccchHHHHHHHHHHHHcCCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhChHHHHHhhcCccchhhHHHhHHhhhc
Q 043020 464 IKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKIS 543 (564)
Q Consensus 464 i~~g~IS~k~AK~il~~ll~~~~~~~~IIee~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk~Gk~k~~gflmGqVMk~t 543 (564)
+++|+||.++||++|.+|++++.++.++|+++||.|+|| ++|+++|++||++||+.|+++ ++|++|||||||||++
T Consensus 525 ~~~g~is~~~~k~vl~~~~~~~~~~~~iiee~gL~qlsd-eel~~iV~evI~en~~~V~~~---~~k~~G~lmGqVMk~t 600 (620)
T TIGR00134 525 LEVGKIAKEGLREILKCMCDEPLAAEDAARKLKLKLLAE-EEIESIIQEIIEENLDMISER---GEGAMGPLMGQAMGRL 600 (620)
T ss_pred HHcCCCcHHHHHHHHHHHHhCCCCHHHHHHHcCCcCCCH-HHHHHHHHHHHHhChHhhhcc---CHhHHHHHHHHHHHHh
Confidence 999999999999999999998889999999999999997 679999999999999999885 4899999999999999
Q ss_pred CCCCChHHHHHHHHHHhhc
Q 043020 544 KGKANPGLLNKILLEKLNA 562 (564)
Q Consensus 544 kGkAdPk~V~~il~e~L~~ 562 (564)
+|||||+.|+++|+++|+.
T Consensus 601 kGkAdp~~V~~lLke~L~~ 619 (620)
T TIGR00134 601 RGKADGKVVNRILRKKLKE 619 (620)
T ss_pred cCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999974
No 8
>PF02934 GatB_N: GatB/GatE catalytic domain; InterPro: IPR006075 Glutamyl-tRNA(Gln) amidotransferase subunit B (6.3.5 from EC) [] is a microbial enzyme that furnishes a means for formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). The enzyme is composed of three subunits: A (an amidase), B and C. It also exists in eukaryotes as a protein targeted to the mitochondria. ; GO: 0016874 ligase activity; PDB: 3H0M_H 3H0R_K 3H0L_K 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B 2G5H_B 2DQN_B ....
Probab=100.00 E-value=7.9e-126 Score=961.12 Aligned_cols=288 Identities=59% Similarity=1.088 Sum_probs=247.1
Q ss_pred ceeeeeeeeeeccCCcccccCCCCCCCCCCCCccCceecCCCCCCccCCHHHHHHHHHHHHHcCCccCCCccccccccCC
Q 043020 74 EAIIGIETHVQLSTLTKAFCTCPYNYGAQPNTSVCPICMGLPGALPVVNSKVVEFAVKLGLALNCKLSFNSKFDRKQYFY 153 (564)
Q Consensus 74 e~vIGLEiHvQL~T~tKlFc~c~~~~~~~PNt~vc~v~lg~PGtLP~lN~~av~~Ai~~~lALnc~I~~~s~FdRK~YfY 153 (564)
|++||||||+||+|+|||||+|++.++++|||+|||||+|+||+||+||++||++|+++|+||||+|++.+.||||||||
T Consensus 1 E~vIGLEiH~qL~T~tKlFc~c~~~~~~~pNt~v~~~~lg~PGtLP~lN~~av~~ai~~a~aLnc~I~~~~~FdRK~YfY 80 (289)
T PF02934_consen 1 ELVIGLEIHVQLNTKTKLFCSCPNEFGAEPNTNVCPVCLGLPGTLPVLNKEAVELAIKAALALNCEINDESSFDRKHYFY 80 (289)
T ss_dssp EEEEEEEEEEEBSSSB-SSSSSBSSTTSCTTSSB-TTTTT-TTCC--EBHHHHHHHHHHHHHTTEEE-SEE-EEEEE-TB
T ss_pred CCEEEEEEEEEeCCCCCCCCCCCCCCCCCCccccCceeccCCCCCcccCHHHHHHHHHHHHhcCCEecccceecccccCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeccCCcceeeccEEEEecccccCCCeeeEEEeEeeeccccccccccCC-CCCccccccccccceeeeecCCC
Q 043020 154 PDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFGITRVHMEEDAGKLLHADD-GEYSQEITFPIIYALQVDLNRAG 232 (564)
Q Consensus 154 pDlPkGYQITQ~~~PI~~~G~i~~~~~~~~~~~~k~i~I~rihLEEDagK~~h~~~-~~~~~~~~~~~~~~~lvD~NRaG 232 (564)
|||||||||||++.|||.||+|++... ++..|+|+|+||||||||||++|.++ .+. ++|||||||
T Consensus 81 pDlPkgYQITQ~~~Pi~~~G~i~i~~~---~~~~k~I~I~~ihlEEDagK~~h~~~~~~~-----------s~vD~NRaG 146 (289)
T PF02934_consen 81 PDLPKGYQITQYDNPIAENGYIEIEFE---DGREKRIRIERIHLEEDAGKSIHDGGGEDY-----------SLVDYNRAG 146 (289)
T ss_dssp TTBTTSEEEEESSS-SEEEEEEEETEC---TSSTEEEEEEEEEEEE---EEEEETT-TTE-----------EEEETTSTT
T ss_pred CccCcCccccCCccceecCCEEEEEec---CCceEEEEEEEEEehhhhhhhcccccccee-----------eEEcccCCC
Confidence 999999999999999999999999642 45679999999999999999999864 333 459999999
Q ss_pred CceeEEeeCCCCCCHHHHHHHHHHHHHHHHHhCcccCCcCCCcccccccccccCCCCCCCccEEEEcCCCChHHHHHHHH
Q 043020 233 VPLLEIVSEPDMRTGLEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINRAID 312 (564)
Q Consensus 233 vPLiEIVTePd~~s~~EA~~~~~~L~~ilr~lgvs~g~meeGslR~DvNVSv~~~g~~~~g~rvEIKNlnS~~~i~~AI~ 312 (564)
+|||||||+|||+|++||++|+++||++|||+|+|||+||+|+|||||||||++.|+..+|+||||||||||++|++||+
T Consensus 147 ~PLiEIVTePd~~s~~EA~~~~~~L~~il~~lgvs~~~me~GslR~DvNVSv~~~g~~~~g~rvEIKNlnS~~~i~~AI~ 226 (289)
T PF02934_consen 147 VPLIEIVTEPDIRSPEEAAAFLKKLRRILRYLGVSDGNMEEGSLRCDVNVSVRPKGEEKFGTRVEIKNLNSFRFIEKAIE 226 (289)
T ss_dssp -EEEEEEE-TTB-SHHHHHHHHHHHHHHHHHHTSB--SGGGTSEEEEEEEEECETTSSSTS-EEEEEEE-SHHHHHHHHH
T ss_pred ccceEEeeCCCCCCHHHHHHHHHHHHHHHHhcCcccCccccCcEEeeceeeecCCCCCCCcceEEEecccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCccccccceeecCCCeeEeccCCCCCCCCCcCcCCCCCceecChHHHHHH
Q 043020 313 FEIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILNKEYVDSI 377 (564)
Q Consensus 313 ~Ei~RQ~~ll~~g~~~~i~qETR~wd~~~~~T~~mR~Ke~~~DYRy~PEpdLpp~~l~~e~i~~i 377 (564)
||+.||+++++.|+ .|.||||+||+.++.|++||+||++.||||||||||||+.|+++|+++|
T Consensus 227 ~Ei~RQ~~~l~~g~--~v~~eTR~~d~~~~~T~~mR~Ke~~~DYRy~pepdlppi~i~~~~i~~i 289 (289)
T PF02934_consen 227 YEIERQIELLENGG--EVEQETRGWDEDKGETVSMRSKEGAADYRYFPEPDLPPIVISDEWIEKI 289 (289)
T ss_dssp HHHHHHHHHHHHTT-----EEEEEEETTTTEEEEEEEESSS----EEE-TTS--EE--HHHHHHH
T ss_pred HHHHHHHHHHHcCC--CeeeecccccCCCCcEeecccCCCccCcCcccCCCCCcEEcCHHHHhhC
Confidence 99999999999996 9999999999999999999999999999999999999999999999986
No 9
>COG2511 GatE Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.8e-81 Score=659.56 Aligned_cols=447 Identities=32% Similarity=0.518 Sum_probs=402.5
Q ss_pred cccce---eeeeeeeeeccCCcccccCCCCCCCC-CC-------------------------------------CCccCc
Q 043020 71 KEYEA---IIGIETHVQLSTLTKAFCTCPYNYGA-QP-------------------------------------NTSVCP 109 (564)
Q Consensus 71 ~~~e~---vIGLEiHvQL~T~tKlFc~c~~~~~~-~P-------------------------------------Nt~vc~ 109 (564)
++|+. .+|||||.||+|++||||+||+...+ +| +.++|.
T Consensus 4 ~dy~~lgLKvGLEIHqQLdT~~KLFC~Cptel~~~e~~~~f~R~Lrpt~SElGeiD~AA~~E~~r~R~f~Y~~~~d~tCL 83 (631)
T COG2511 4 MDYEELGLKVGLEIHQQLDTKRKLFCRCPTELRDGEPDFEFERYLRPTRSELGEVDPAALEESKRGRKFIYEAYYDTTCL 83 (631)
T ss_pred cChHHhcceeceeehhhhcCCcceeccCCcccccCCcCceEEEeeccchhhhcccCHHHHHHHHhcceEEEEecCCccee
Confidence 46664 49999999999999999999998533 32 699999
Q ss_pred eecC-CCCCCccCCHHHHHHHHHHHHHcCCccCCCccccccccCCCCCCCCceeccCCcceeeccEEEEecccccCCCee
Q 043020 110 ICMG-LPGALPVVNSKVVEFAVKLGLALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHR 188 (564)
Q Consensus 110 v~lg-~PGtLP~lN~~av~~Ai~~~lALnc~I~~~s~FdRK~YfYpDlPkGYQITQ~~~PI~~~G~i~~~~~~~~~~~~k 188 (564)
|.+. .|++ .+|++|+..|+..|++|||+|.+..+.+||......+..|||.|-+ ||.||+|+.. ++
T Consensus 84 VE~DEEPPh--~~neeAl~iAl~Va~lln~~iVDei~vMRKiVIDGSNTsGFQRTai---va~~G~iets--------~g 150 (631)
T COG2511 84 VEADEEPPH--EPNEEALAIALAVAKLLNMDIVDEIHVMRKIVIDGSNTSGFQRTAI---VAIGGYIETS--------EG 150 (631)
T ss_pred eecCCCCCC--CCCHHHHHHHHHHHHHhCCCccceeEEEEEEEEecCCCccceeeEE---EeeCceeecC--------CC
Confidence 9999 8999 6799999999999999999999999999999999999999999999 9999999863 36
Q ss_pred eEEEeEeeeccccccccccCCCCCccccccccccceeeeecCCCCceeEEeeCCCCCCHHHHHHHHHHHHHHHHHhC-cc
Q 043020 189 RFGITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNRAGVPLLEIVSEPDMRTGLEAAEYAAELQRLVRYLG-VS 267 (564)
Q Consensus 189 ~i~I~rihLEEDagK~~h~~~~~~~~~~~~~~~~~~lvD~NRaGvPLiEIVTePd~~s~~EA~~~~~~L~~ilr~lg-vs 267 (564)
+|+|..|+|||||++.+.+.++ + +.+.++|.|+|||||-|+||++||++|++.++.|..+||.+| +.
T Consensus 151 ~V~I~tlclEEDAARKIee~~~-~-----------VvYsLDRLGIPLIEIsT~PdI~sp~~A~evA~~IG~~lrsTGkvK 218 (631)
T COG2511 151 PVGIETLCLEEDAARKIEEKGD-T-----------VVYSLDRLGIPLIEISTEPDIRSPEQAREVAERIGYILRSTGKVK 218 (631)
T ss_pred ccCceeeeecHHHhhhhhccCC-e-----------EEEEecccCCceEEeecCCCCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 7999999999999999976443 2 348889999999999999999999999999999999999998 99
Q ss_pred cCCcCCCcccccccccccCCCCCCCccEEEEcCCCChHHHHHHHHHHHHHHHHHHH-------cCCC---Ccc-------
Q 043020 268 NGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINRAIDFEIARQALLYS-------QGKA---DQI------- 330 (564)
Q Consensus 268 ~g~meeGslR~DvNVSv~~~g~~~~g~rvEIKNlnS~~~i~~AI~~Ei~RQ~~ll~-------~g~~---~~i------- 330 (564)
+| -|++|+||||||+ .|+|||||+++.+..|.+.|+||+.||.+|+. +|+. .++
T Consensus 219 rg---lgTIRQDvNvSI~------~GarvEIKGVq~LdlI~~vv~yEv~RQ~nLlkirdeL~~RG~~~~~~~~~DVTdlF 289 (631)
T COG2511 219 RG---LGTIRQDVNVSIK------GGARVEIKGVQDLDLIPDVVEYEVERQLNLLKIRDELKERGGADVSEEVFDVTDLF 289 (631)
T ss_pred cc---Ccceeeeeeeeec------CCceEEecCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccHHHHh
Confidence 99 9999999999998 69999999999999999999999999998874 3321 001
Q ss_pred --------------------------------------------------------------------------------
Q 043020 331 -------------------------------------------------------------------------------- 330 (564)
Q Consensus 331 -------------------------------------------------------------------------------- 330 (564)
T Consensus 290 ~~TkSkiI~~~l~~gG~V~A~~l~~f~GlvG~EiqpGrRlGtE~AD~ar~~GvgGlfHsDELP~YGIteeEV~~v~d~lg 369 (631)
T COG2511 290 ANTKSKIIRSGLKKGGKVYAVLLPGFAGLVGREIQPGRRLGTEFADYARAYGVGGLFHSDELPGYGITEEEVEAVRDALG 369 (631)
T ss_pred ccCchHHHHHhhccCCeEEEEEcCCccccccccccCCcccchHHHHHHHHhCCCcccccccCccCCCCHHHHHHHHHHhC
Confidence
Q ss_pred -----------------------------------ccccceeecCCCeeEeccCCCCCCCCCcCcCCCCCceecChHHHH
Q 043020 331 -----------------------------------VQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILNKEYVD 375 (564)
Q Consensus 331 -----------------------------------~qETR~wd~~~~~T~~mR~Ke~~~DYRy~PEpdLpp~~l~~e~i~ 375 (564)
..|||+-.+. |.|.+||+.++++ |||||+|+||+.|++++++
T Consensus 370 a~~~Davvlva~~~~~~~~a~~~V~~Ra~~ai~gvpeETR~a~~D-GtT~yLRPlPGaa--RMYPETDIPpi~i~~~~l~ 446 (631)
T COG2511 370 AGEEDAVVLVAGEEERAKRALEAVIERAKEAIEGVPEETRGALPD-GTTVYLRPLPGAA--RMYPETDIPPIRIDEELLE 446 (631)
T ss_pred CCCCceEEEEeCCHHHHHHHHHHHHHHHHHHHcCCCHhhccCCCC-CCceeecCCCCcc--ccCCcCCCCCcccCHHHHH
Confidence 2345554432 4699999999999 9999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHH-HcCCCHHHHHHHHhChhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCcccccCCH
Q 043020 376 SIQSSLPELPEMKRRRYE-EMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMGDIAAYMKNEKLTINEIKLSA 454 (564)
Q Consensus 376 ~i~~~lPElP~~~~~Rl~-~ygLs~~dA~~L~~d~~la~yFE~~v~~~~~pk~vaNWi~~ell~~L~~~~~~i~~~~isp 454 (564)
.++..+||+|+++.+||. +||||.+.|..|+.++.+ +.||+.+..+.+|+.+|..|.+.+ ..|++.+..++ +++.
T Consensus 447 ~~~~~~Pe~~~ek~~r~~~eygLs~~LA~~~~~~~~~-~~FEel~e~~v~p~~~A~~L~~~~-~~L~reg~~i~--~l~~ 522 (631)
T COG2511 447 KIKENLPELPEEKVERYVKEYGLSKELAEQLASDPRV-DLFEELVEKGVDPTLIASTLVNTL-PELRREGVEID--NLDD 522 (631)
T ss_pred HHhhhCCCCHHHHHHHHHHHhCCCHHHHHHHHhhhhH-HHHHHHHHcCCCHHHHHHHHHHHH-HHHHhcCCccc--cCCH
Confidence 999999999999999995 799999999999999876 999999998899999999998866 77999988876 6789
Q ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHH-cCCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhChHHHHHhhcCccchhh
Q 043020 455 AELAELIASIKGATISGKIGKEILFELMA-KGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQG 533 (564)
Q Consensus 455 e~LaeLI~li~~g~IS~k~AK~il~~ll~-~~~~~~~IIee~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk~Gk~k~~g 533 (564)
+++-++++++.+|.|+.....++|..|.. .+.++.++++++||...+ ++|++.+|++++..|-+++.+ ..++++|
T Consensus 523 ~~i~~~~~~~~~g~iake~iee~l~~l~~~p~~~~~e~~~~~gL~~ls-~eEve~iI~eii~~~~d~i~~---rg~~a~g 598 (631)
T COG2511 523 EHIEELLRLVSEGKIAKEAIEEILKALAENPGKDAAEIAEKLGLKELS-EEEVEKIIDEIIESNLDVIKE---RGMGAMG 598 (631)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCHHHHHHHhccccCC-HHHHHHHHHHHHHhhHHHHHH---hchhhHH
Confidence 99999999999998888888888888875 568999999999999998 899999999999999887754 4489999
Q ss_pred HHHhHHhhhcCCCCChHHHHHHHHHHhhc
Q 043020 534 FFAGQVMKISKGKANPGLLNKILLEKLNA 562 (564)
Q Consensus 534 flmGqVMk~tkGkAdPk~V~~il~e~L~~ 562 (564)
.+||+||++++|+|||++|+++|+++|+.
T Consensus 599 ~lmg~~M~~~rg~aDgk~v~e~lr~~i~e 627 (631)
T COG2511 599 LLMGRVMAKLRGRADGKLVSEILREKLQE 627 (631)
T ss_pred HHHHHHHHHhhccCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999974
No 10
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=100.00 E-value=1.9e-36 Score=342.85 Aligned_cols=176 Identities=38% Similarity=0.646 Sum_probs=169.0
Q ss_pred CHHHHHHHHH-HcCCCHHHHHHHHhChhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCcccccCCHHHHHHHHH
Q 043020 384 LPEMKRRRYE-EMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELIA 462 (564)
Q Consensus 384 lP~~~~~Rl~-~ygLs~~dA~~L~~d~~la~yFE~~v~~~~~pk~vaNWi~~ell~~L~~~~~~i~~~~ispe~LaeLI~ 462 (564)
-++++++||. +||||.++|.+|++++.+++|||++++.+.+|+.+||||++||+++||+. ++.+++++|++|++|+.
T Consensus 595 ~~~~r~~Rlv~eyGLs~~dA~~L~~d~~la~yFE~~v~~~~~pk~aANWl~~El~~~Lne~--~i~~~~l~pe~LaeLv~ 672 (771)
T PRK14703 595 EQRARFDRYLSELGLNEEDARTLARDPALAAFFEAALAAGKSPVQLANWVVNDLAGLLRDR--ELAALPFTPAALARLVA 672 (771)
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHcChHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcC--CCccCCCCHHHHHHHHH
Confidence 3578899996 69999999999999999999999999888899999999999999999997 46788999999999999
Q ss_pred HHHcCccchHHHHHHHHHHHHcCCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhChHHHHHhhcCccchhhHHHhHHhhh
Q 043020 463 SIKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKI 542 (564)
Q Consensus 463 li~~g~IS~k~AK~il~~ll~~~~~~~~IIee~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk~Gk~k~~gflmGqVMk~ 542 (564)
+|++|+||.++||+||.+|++++++|.+||+++||.|++|+++|+++|++||++||++|++|++||+|++|||||||||+
T Consensus 673 lV~~g~IS~~~AK~VL~~m~~~~~~p~~IIee~GL~qisDe~~Le~iV~eVI~~NP~~Ve~yk~GK~kalgfLVGqVMK~ 752 (771)
T PRK14703 673 LVDAGRISTRIAKDVLAELAASGGDPEAIVEAKGLEQVSDAGALEPIVEEVLAAHPDKVAAYRAGKTKLLGFFVGQVMRE 752 (771)
T ss_pred HHHcCCccHHHHHHHHHHHHhcCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHCHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 99999999999999999999989999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHhh
Q 043020 543 SKGKANPGLLNKILLEKLN 561 (564)
Q Consensus 543 tkGkAdPk~V~~il~e~L~ 561 (564)
|+|||||++|+++|+++|+
T Consensus 753 tkGKAdP~~V~elLke~L~ 771 (771)
T PRK14703 753 TGGKANPQQVRELLQKKLG 771 (771)
T ss_pred hCCCCCHHHHHHHHHHHhC
Confidence 9999999999999999985
No 11
>PF02637 GatB_Yqey: GatB domain; InterPro: IPR018027 The GatB domain, the function of which is uncertain, is associated with aspartyl/glutamyl amidotransferase subunit B and glutamyl amidotransferase subunit E. These are involved in the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln). ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 2D6F_D 3H0M_H 3H0R_K 3H0L_K 3KFU_F 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B ....
Probab=100.00 E-value=4e-36 Score=280.56 Aligned_cols=148 Identities=43% Similarity=0.713 Sum_probs=132.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCcccccCCHHHHHHHHHHHHcCccchHHHHHHHHHHHHcCCCHHHHH
Q 043020 413 RFFDATIEKGADVKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELIASIKGATISGKIGKEILFELMAKGGTVKGII 492 (564)
Q Consensus 413 ~yFE~~v~~~~~pk~vaNWi~~ell~~L~~~~~~i~~~~ispe~LaeLI~li~~g~IS~k~AK~il~~ll~~~~~~~~II 492 (564)
||||++++.+.+|+.++||+++++++.|++.++++.+++++|++|++|++++++|+||+++||++|..+++++++|.++|
T Consensus 1 d~Fe~~~~~~~~~k~~anwi~~el~~~l~~~~~~~~~~~i~~~~l~~li~l~~~~~Is~~~ak~ll~~~~~~~~~~~~ii 80 (148)
T PF02637_consen 1 DYFEEVVKKGKNPKLAANWILNELLGLLNKKGLDIEDSPISPEHLAELINLLEDGKISKKSAKELLRELLENGKSPEEII 80 (148)
T ss_dssp HHHHHHHCHSS-HHHHHHHHHTHHHHHHHHHT--TTTSSSTHHHHHHHHHHHHTTSSGHHHHHHHHHHHHHHTS-HHHHH
T ss_pred CHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCCCChhhcCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHhChHHHHHhhcCccchhhHHHhHHhhhcCCCCChHHHHHHHHHHh
Q 043020 493 IEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKISKGKANPGLLNKILLEKL 560 (564)
Q Consensus 493 ee~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk~Gk~k~~gflmGqVMk~tkGkAdPk~V~~il~e~L 560 (564)
+++||.+++|+++|+++|++||++||++|++|++|++++++||||||||+|+|||||+.|+++|+++|
T Consensus 81 ~~~~l~~i~d~~el~~~v~~vi~~n~~~v~~~~~Gk~k~~~~LvGqvMk~t~G~adp~~v~~~l~~~L 148 (148)
T PF02637_consen 81 EENGLWQISDEEELEALVEEVIAENPKEVEDYRNGKKKAIGFLVGQVMKETKGRADPKEVKELLKEKL 148 (148)
T ss_dssp HHTT---B--CCHHHHHHHHHHHC-HHHHHHHCTT-TTCCHHHHHHHHHCTTS-C-HHHHHHHHHHHC
T ss_pred HHcCCCcCCCHHHHHHHHHHHHHHCHHHHHHHHcChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999986
No 12
>smart00845 GatB_Yqey GatB domain. This domain is found in GatB and proteins related to bacterial Yqey. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB which transamidates Glu-tRNA to Gln-tRNA. The function of this domain is uncertain. It does however suggest that Yqey and its relatives have a role in tRNA metabolism.
Probab=100.00 E-value=1.2e-34 Score=270.81 Aligned_cols=147 Identities=48% Similarity=0.800 Sum_probs=143.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCcccccCCHHHHHHHHHHHHcCccchHHHHHHHHHHHHcCCCHHHHHH
Q 043020 414 FFDATIEKGADVKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELIASIKGATISGKIGKEILFELMAKGGTVKGIII 493 (564)
Q Consensus 414 yFE~~v~~~~~pk~vaNWi~~ell~~L~~~~~~i~~~~ispe~LaeLI~li~~g~IS~k~AK~il~~ll~~~~~~~~IIe 493 (564)
|||++++.+.+|+.++|||++|+++.||+.++++++++++|++|++|+.++++|+||.++||++|..+++++++|.++|+
T Consensus 1 ~fe~~~~~~~~~k~~anwi~~el~~~l~~~~~~~~~~~i~~~~l~~li~lv~~g~It~~~ak~vl~~~~~~~~~~~~ii~ 80 (147)
T smart00845 1 YFEEVVKAGADPKLAANWLLGELLGELNKEGLEIEESPITPEHLAELLKLIEDGTISGKIAKEVLEELLESGKSPEEIVE 80 (147)
T ss_pred CHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCCHhhCCCCHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCCHHHHHH
Confidence 68988877889999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHhChHHHHHhhcCccchhhHHHhHHhhhcCCCCChHHHHHHHHHHh
Q 043020 494 EKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKISKGKANPGLLNKILLEKL 560 (564)
Q Consensus 494 e~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk~Gk~k~~gflmGqVMk~tkGkAdPk~V~~il~e~L 560 (564)
+++|.+++|+++|+++|+++|++||++|++|++|+.|++|||||+|||+++|||||+.|+++|+++|
T Consensus 81 ~~~l~~isd~~el~~~v~~vi~~~~~~v~~~~~g~~k~~~~l~G~vMk~~~G~ad~~~v~~~l~~~L 147 (147)
T smart00845 81 EKGLKQISDEGELEAIVDEVIAENPKAVEDYRAGKKKALGFLVGQVMKATRGKADPKLVNELLKEKL 147 (147)
T ss_pred HcCCccCCCHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999876
No 13
>PF09424 YqeY: Yqey-like protein; InterPro: IPR019004 Putative protein of unknown function; the authentic protein is detected in highly purified mitochondria in high-throughput studies; YOR215C is not an essential gene. ; PDB: 1NG6_A.
Probab=98.76 E-value=1.6e-07 Score=88.03 Aligned_cols=114 Identities=22% Similarity=0.217 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHhcCCCcccccCCHHHHHHHHHHHHcCccchHHHHHHHHHHHHcCC--------CHHHHHHhcCCCC
Q 043020 428 AANWIMGDIAAYMKNEKLTINEIKLSAAELAELIASIKGATISGKIGKEILFELMAKGG--------TVKGIIIEKDLVQ 499 (564)
Q Consensus 428 vaNWi~~ell~~L~~~~~~i~~~~ispe~LaeLI~li~~g~IS~k~AK~il~~ll~~~~--------~~~~IIee~~l~q 499 (564)
+-+.+.+++...-...+. +++.+++-.+|.... +..++.+..+-..|+ ...+|+++|.|.|
T Consensus 22 ~lr~~~a~i~~~e~~~~~-----~l~d~~v~~vi~k~i------Kqr~ea~e~y~~agR~dlae~e~~Ei~iL~~yLP~~ 90 (143)
T PF09424_consen 22 TLRMLLAAIKNAEKDKGR-----ELTDEEVIAVIRKEI------KQRKEAAEQYEKAGRPDLAEKEQAEIEILEEYLPKQ 90 (143)
T ss_dssp HHHHHHHHHHHHHHHTTS--------HHHHHHHHHHHH------HHHHHHHHHHHHHT-HHHHHHHHHHHHHHGGGS---
T ss_pred HHHHHHHHHHHhhhccCC-----CCCHHHHHHHHHHHH------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCcCC
Confidence 445555555544333332 467777666665432 444555555443332 3458999999999
Q ss_pred CCCHHHHHHHHHHHHHhChHHHHHhhcCccchhhHHHhHHhhhcCCCCChHHHHHHHHHHh
Q 043020 500 IVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKISKGKANPGLLNKILLEKL 560 (564)
Q Consensus 500 isD~~eL~~lV~eVi~~np~~Ve~yk~Gk~k~~gflmGqVMk~tkGkAdPk~V~~il~e~L 560 (564)
+| +++|+++|+++|++. .....+.||.+||.+|.+++|+||++.|+++|++.|
T Consensus 91 ls-eeEi~~~v~~~i~e~-------ga~~~k~mG~vMk~l~~~~~G~~Dgk~vs~~Vk~~L 143 (143)
T PF09424_consen 91 LS-EEEIEAIVEEAIAEL-------GASSMKDMGKVMKALMAKLKGRADGKKVSQLVKEAL 143 (143)
T ss_dssp ---HHHHHHHHHHHHHHT-------T--BGGGHHHHHHHHHHHHTTTS-HHHHHHHHHHH-
T ss_pred CC-HHHHHHHHHHHHHHh-------CCCChHHHHHHHHHHHHHcCCcccHHHHHHHHHhhC
Confidence 99 889999999999998 444688999999999999999999999999999986
No 14
>COG1610 Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=2.2e-07 Score=86.27 Aligned_cols=98 Identities=23% Similarity=0.225 Sum_probs=79.5
Q ss_pred ccCCHHHHHHHHHHHHcCccchHHHHHHHHHHHHcCC--------CHHHHHHhcCCCCCCCHHHHHHHHHHHHHhChHHH
Q 043020 450 IKLSAAELAELIASIKGATISGKIGKEILFELMAKGG--------TVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQL 521 (564)
Q Consensus 450 ~~ispe~LaeLI~li~~g~IS~k~AK~il~~ll~~~~--------~~~~IIee~~l~qisD~~eL~~lV~eVi~~np~~V 521 (564)
.+++.+.+-.++...- ++.|+.+..+.+.++ ....||++|.|.|++ +++|.++|+++|++-
T Consensus 43 ~~l~d~~il~vl~k~i------KQRrdS~~~y~~agR~dLa~kE~~Ei~Ii~~ylP~qLs-d~e~~~~v~~aIae~---- 111 (148)
T COG1610 43 DELDDEEILKVLAKEI------KQRRDSAEEYEKAGRQDLAAKERAEIAIIEEYLPQQLS-EDELRALVDAAIAEV---- 111 (148)
T ss_pred CCCChHHHHHHHHHHH------HHHHHHHHHHHHcCcHHHHHHHHhHHHHHHHhCcccCC-HHHHHHHHHHHHHHH----
Confidence 4577777766665443 455677766555543 567899999999999 678999999999986
Q ss_pred HHhhcCccchhhHHHhHHhhhcCCCCChHHHHHHHHHHhh
Q 043020 522 EQYRGGKTKLQGFFAGQVMKISKGKANPGLLNKILLEKLN 561 (564)
Q Consensus 522 e~yk~Gk~k~~gflmGqVMk~tkGkAdPk~V~~il~e~L~ 561 (564)
.+...+.||.+||.+|.+..|+||+..|+.+|++.|+
T Consensus 112 ---Gas~~~dMGkvM~al~~k~~GkaD~~~vs~~VK~~L~ 148 (148)
T COG1610 112 ---GASSMKDMGKVMKALKPKVAGKADGGRVSKLVKELLS 148 (148)
T ss_pred ---HHhhHHHHHHHHHHHhHHhcccCcHHHHHHHHHHHhC
Confidence 5556899999999999999999999999999999884
No 15
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=96.92 E-value=0.069 Score=51.48 Aligned_cols=151 Identities=18% Similarity=0.144 Sum_probs=95.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhChhhHHHHHHHHHhc-C---CHHHHHHHHHHHHHHHHHhcCCCcccccCCHHHHHHHH
Q 043020 386 EMKRRRYEEMGLSMQDVLFLANDINVARFFDATIEKG-A---DVKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELI 461 (564)
Q Consensus 386 ~~~~~Rl~~ygLs~~dA~~L~~d~~la~yFE~~v~~~-~---~pk~vaNWi~~ell~~L~~~~~~i~~~~ispe~LaeLI 461 (564)
++..+.|...||+..-|.-.+.++.++.-+..++... . -++...+.| .-+...++... ..+...|+
T Consensus 4 eel~~lF~~iGL~e~kAket~KN~kls~~L~~iI~ea~~~~~~dk~~g~LL-y~lAtk~k~~~---------~~~r~~iv 73 (164)
T PF04558_consen 4 EELIELFKSIGLSEKKAKETLKNKKLSASLKAIINEAGVDSGCDKKQGNLL-YQLATKLKPQA---------LPHRPFIV 73 (164)
T ss_dssp HHHHHHHHHTT--HHHHHHHTTSHHHHHHHHHHHHTS-TT----HHHHHHH-HHHHHHHTT------------TTHHHHH
T ss_pred HHHHHHHHHcCCChhhHHHHHhCHHHHHHHHHHHHHhcccCCCCHHHHHHH-HHHHHhcCCCc---------chhHHHHH
Confidence 3455667889999999999999999998888888652 1 134444443 34444444332 34788999
Q ss_pred HHHHcCcc-chHHHHHHHHHHHHcC---CCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhChHHHHHhhcCccc--hhhHH
Q 043020 462 ASIKGATI-SGKIGKEILFELMAKG---GTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTK--LQGFF 535 (564)
Q Consensus 462 ~li~~g~I-S~k~AK~il~~ll~~~---~~~~~IIee~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk~Gk~k--~~gfl 535 (564)
+.|.+|.| |.-+--..+.-+...+ -+..+.=++-|....-.+++|++.|+++|++|.+++.+-| -+ -++.+
T Consensus 74 ~~I~~gklkt~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cGVGV~VT~E~I~~~V~~~i~~~k~~i~~~R---y~~~~~~~~ 150 (164)
T PF04558_consen 74 KYIVDGKLKTNLQLDAALKYLKSNPSEPIDVAEFEKACGVGVVVTPEQIEAAVEKYIEENKEEILEKR---YRLFNIGLL 150 (164)
T ss_dssp HHHHTTS--SHHHHHHHHHHHHHHGG-G--HHHHHHTTTTT----HHHHHHHHHHHHHHTHHHHHHHG---GGGHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHcCCCeEECHHHHHHHHHHHHHHhHHHHHHHH---hccCchhhH
Confidence 99999999 5555555565554433 4677888888998665699999999999999988776644 33 35566
Q ss_pred HhHHhhhcCCCCChH
Q 043020 536 AGQVMKISKGKANPG 550 (564)
Q Consensus 536 mGqVMk~tkGkAdPk 550 (564)
++++.+..+ =|||+
T Consensus 151 ~~k~~~~Lk-WAd~k 164 (164)
T PF04558_consen 151 LVKVRPSLK-WADGK 164 (164)
T ss_dssp HHHT-GGGT-TS-T-
T ss_pred HHHHhccCC-CCCCC
Confidence 666666654 35553
No 16
>PLN02859 glutamine-tRNA ligase
Probab=96.92 E-value=0.036 Score=64.74 Aligned_cols=161 Identities=20% Similarity=0.207 Sum_probs=115.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHhChhhHHHHHHHHHh-cCC---HHHHHHHHHHHHHHHHHhcCCCcccccCCHHHHHHHHH
Q 043020 387 MKRRRYEEMGLSMQDVLFLANDINVARFFDATIEK-GAD---VKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELIA 462 (564)
Q Consensus 387 ~~~~Rl~~ygLs~~dA~~L~~d~~la~yFE~~v~~-~~~---pk~vaNWi~~ell~~L~~~~~~i~~~~ispe~LaeLI~ 462 (564)
+..+.|...||+..-|.-++.++.++.=+++++.. +.. .+...+.| ..|...++. -...+...|+.
T Consensus 7 ~~~~~f~~IGL~e~kAketlKN~klt~~L~~iI~ea~~~~~~dk~~g~LL-y~LAtk~~~---------~~~~~r~~lv~ 76 (788)
T PLN02859 7 KPLELFLKIGLDERTARNAIANNKVTSNLTAVIHEAGVTNGCDKTVGNLL-YTVATKYPA---------NALVHRPTLLS 76 (788)
T ss_pred HHHHHHHHcCCChHHHHHHHhCHHHHHHHHHHHHhcCCccCCChHHHHHH-HHHHHhcCC---------ccchhHHHHHH
Confidence 34566788999999999999999998888888765 221 34555544 334333321 12447788999
Q ss_pred HHHcCccch-HHHHHHHHHHHHcC---CCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhChHHHHHhhcCccchhhHHHhH
Q 043020 463 SIKGATISG-KIGKEILFELMAKG---GTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQ 538 (564)
Q Consensus 463 li~~g~IS~-k~AK~il~~ll~~~---~~~~~IIee~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk~Gk~k~~gflmGq 538 (564)
+|.+|.|.. .+-...+.-+.+.+ .+..+.-++-|....-.+++|++.|.++|++|.+.+.+-| -...+|.+||+
T Consensus 77 ~I~~gkIkT~~Ql~AA~kYl~~~~~~~~d~~~Fek~CGVGV~VT~EqI~~~V~~~i~~~k~~il~~R--Y~~n~g~ll~~ 154 (788)
T PLN02859 77 YIVSSKIKTPAQLEAAFSFFSSTGPESFDLNKFEEACGVGVVVSPEDIEAAVNEVFEENKEKILEQR--YRTNVGDLLGQ 154 (788)
T ss_pred HHHhCCCCCHHHHHHHHHHHHhCCCCccCHHHHHHhCCCCEEECHHHHHHHHHHHHHhhHHHHHHhc--ccccHHHHHHH
Confidence 999999944 45666665554433 3566777888987655699999999999999988777543 33448999999
Q ss_pred HhhhcCCCCChHHHHHHHHHHh
Q 043020 539 VMKISKGKANPGLLNKILLEKL 560 (564)
Q Consensus 539 VMk~tkGkAdPk~V~~il~e~L 560 (564)
|-+..+ =|||+.|.++|.+.+
T Consensus 155 ~r~~Lk-wad~~~~k~~id~~~ 175 (788)
T PLN02859 155 VRKRLP-WADPKIVKKLIDKKL 175 (788)
T ss_pred HHhhCC-CCCHHHHHHHHHHHH
Confidence 877554 599999999997654
No 17
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.68 E-value=0.21 Score=56.32 Aligned_cols=159 Identities=20% Similarity=0.184 Sum_probs=106.0
Q ss_pred HHHHHHHcCCCHHHHHHHHhChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCcccccCCHHHHHHHHHHH
Q 043020 388 KRRRYEEMGLSMQDVLFLANDINVARFFDATIEKGAD---VKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELIASI 464 (564)
Q Consensus 388 ~~~Rl~~ygLs~~dA~~L~~d~~la~yFE~~v~~~~~---pk~vaNWi~~ell~~L~~~~~~i~~~~ispe~LaeLI~li 464 (564)
.++.|.+.|||++-|...+.+..+.+=.++++..... -....--|+..|+..++.. ...++.-|+++|
T Consensus 6 l~~~f~~lGlse~k~~etlKn~kvs~~l~~~i~~a~~~~~~~~~~g~Lly~lAt~~~~q---------~~~~~~llv~yI 76 (764)
T KOG1148|consen 6 LIALFTSLGLSEKKVKETLKNKKVSANLEKIIKEADVSSGCDRTTGNLLYTLATKLKPQ---------KLAHLPLLVSYI 76 (764)
T ss_pred HHHHHHHcCCCHHHHHHHHhHHHHHHHHHHHHHhcccccccccccchhHHHHHhhcCcc---------ccccchHHHHHH
Confidence 4566788999999999988888877777777654211 1111112223333333322 223566889999
Q ss_pred HcCcc-chHHHHHHHHHHHHcCCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhChHHHHHhhcCccchhhHHHhHHhhhc
Q 043020 465 KGATI-SGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKIS 543 (564)
Q Consensus 465 ~~g~I-S~k~AK~il~~ll~~~~~~~~IIee~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk~Gk~k~~gflmGqVMk~t 543 (564)
.++.| +..+-...|.-+.....+..+.=++-|..-+..++.|++.|.+++++|.+.+-.-| -+.-..++|.|-+..
T Consensus 77 ~~~~ikt~~ql~aa~~Y~~~~~~~~~~fe~ecgvgvvvtpeqie~~V~~~i~~~k~~il~eR---y~~~~gl~~~~R~~L 153 (764)
T KOG1148|consen 77 VNGKIKTELQLDAALEYVKSHTLDKKDFEKECGVGVVVTPEQIEEAVRKYIAENKEKILEER---YHFNKGLFGDVRKEL 153 (764)
T ss_pred HhcccCchHHHHHHHHHHhccccchhhhhhhcCccEEECHHHHHHHHHHHHHHhHHHHHHHH---HhcchhhHHHHHhhc
Confidence 99999 66667777766655444556777888888777799999999999999965432222 223333888886666
Q ss_pred CCCCChHHHHHHHHHH
Q 043020 544 KGKANPGLLNKILLEK 559 (564)
Q Consensus 544 kGkAdPk~V~~il~e~ 559 (564)
+ =|||+.|.+.|.++
T Consensus 154 k-wAD~~~vk~~iD~~ 168 (764)
T KOG1148|consen 154 K-WADPKSVKKEIDKE 168 (764)
T ss_pred C-CCCHHHHHHHHhhH
Confidence 5 59999999888664
No 18
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=65.00 E-value=74 Score=33.88 Aligned_cols=101 Identities=16% Similarity=0.323 Sum_probs=52.0
Q ss_pred CCCCCcee-cChHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHH-hC----hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043020 361 EPDLPEVI-LNKEYVDSIQSSLPELPEMKRRRYEEMGLSMQDVLFLA-ND----INVARFFDATIEKGADVKLAANWIMG 434 (564)
Q Consensus 361 EpdLpp~~-l~~e~i~~i~~~lPElP~~~~~Rl~~ygLs~~dA~~L~-~d----~~la~yFE~~v~~~~~pk~vaNWi~~ 434 (564)
.++.|++. ++++++++++. +| .|+.+.+.+... |.. .+.... .+ ..+++-+++++..+.+-....-.++.
T Consensus 147 ~~~~~disild~eFl~~v~~-~~-~k~~~~e~L~~~-l~~-~I~~~~~~N~~~~~~fsErLe~iI~~Y~~~~i~~~e~~~ 222 (335)
T PF11867_consen 147 GLKKPDISILDDEFLEEVKK-MK-SKNLKAELLEKL-LRD-EIKVRMKENPVRYKKFSERLEEIIEKYNNRSISSEEVIE 222 (335)
T ss_pred CCCCCChhhcCHHHHHHHHh-cc-CchHHHHHHHHH-HHH-HHHHHHhcCHHHHHHHHHHHHHHHHHHHcccchHHHHHH
Confidence 45666774 48899988864 33 455444444321 111 122221 22 34566778888765554333334444
Q ss_pred HHH---HHHHhcCCCcccccCCHHHHHHHHHHHHc
Q 043020 435 DIA---AYMKNEKLTINEIKLSAAELAELIASIKG 466 (564)
Q Consensus 435 ell---~~L~~~~~~i~~~~ispe~LaeLI~li~~ 466 (564)
+|. ..+++..-.-.+..++++.++ +.+++..
T Consensus 223 eLi~la~el~~~~~r~~~~gLseeE~A-Fyd~L~~ 256 (335)
T PF11867_consen 223 ELIKLAKELREEEERAEELGLSEEELA-FYDALAK 256 (335)
T ss_pred HHHHHHHHHHHHHhcccccCCCHHHHH-HHHHHHc
Confidence 444 333333333345678888775 3445543
No 19
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=61.20 E-value=7.4 Score=37.94 Aligned_cols=47 Identities=23% Similarity=0.405 Sum_probs=34.8
Q ss_pred ccccccccCCCCCCCCceeccCCcceeeccEEEEecccccCC--CeeeEEEeE
Q 043020 144 SKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGG--GHRRFGITR 194 (564)
Q Consensus 144 s~FdRK~YfYpDlPkGYQITQ~~~PI~~~G~i~~~~~~~~~~--~~k~i~I~r 194 (564)
..|-|| |. ||+||-.++...-|..+|.|.|+.+-.... ..+.|.|++
T Consensus 115 R~F~R~---y~-LP~~vdp~~V~S~LS~dGvLtI~ap~~~~~~~~er~ipI~~ 163 (173)
T KOG3591|consen 115 RSFVRK---YL-LPEDVDPTSVTSTLSSDGVLTIEAPKPPPKQDNERSIPIEQ 163 (173)
T ss_pred EEEEEE---ec-CCCCCChhheEEeeCCCceEEEEccCCCCcCccceEEeEee
Confidence 578888 44 999999999999999999999987532211 135566654
No 20
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=58.37 E-value=29 Score=31.37 Aligned_cols=61 Identities=13% Similarity=0.305 Sum_probs=43.0
Q ss_pred cCCHHHHHHHHH-HHHcCccchHHHHHHHHHHHHcCC------------CHHHHHHhcCCCCCCCHHHHHHHHH
Q 043020 451 KLSAAELAELIA-SIKGATISGKIGKEILFELMAKGG------------TVKGIIIEKDLVQIVDPSEIEKMVD 511 (564)
Q Consensus 451 ~ispe~LaeLI~-li~~g~IS~k~AK~il~~ll~~~~------------~~~~IIee~~l~qisD~~eL~~lV~ 511 (564)
..+.+++.+|++ +|++|.||...||.++++++...+ ....++.+.++.+-|+.+++.+-|+
T Consensus 20 a~~~ek~~klvDelVkkGeln~eEak~~vddl~~q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd 93 (108)
T COG3937 20 AETAEKVQKLVDELVKKGELNAEEAKRFVDDLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVD 93 (108)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHH
Confidence 456778888885 778999999999999999985321 2345666666666565555555443
No 21
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=53.40 E-value=1e+02 Score=28.19 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHcCccchHHHHHHH
Q 043020 452 LSAAELAELIASIKGATISGKIGKEIL 478 (564)
Q Consensus 452 ispe~LaeLI~li~~g~IS~k~AK~il 478 (564)
-....-.++++++++|.||..-|.++|
T Consensus 86 ~~~~~~~~IL~~L~~GeIs~eeA~~~L 112 (113)
T PF09862_consen 86 EEEDERKEILDKLEKGEISVEEALEIL 112 (113)
T ss_pred ccchhHHHHHHHHHcCCCCHHHHHHHh
Confidence 445678899999999999999998776
No 22
>PRK06012 flhA flagellar biosynthesis protein FlhA; Validated
Probab=52.51 E-value=1.9e+02 Score=34.25 Aligned_cols=94 Identities=22% Similarity=0.344 Sum_probs=58.6
Q ss_pred cCCHHHHHHHHHHHHcCccchHHHHHHHHHHHHcCCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhChHHHHHhhcCcc-
Q 043020 451 KLSAAELAELIASIKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKT- 529 (564)
Q Consensus 451 ~ispe~LaeLI~li~~g~IS~k~AK~il~~ll~~~~~~~~IIee~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk~Gk~- 529 (564)
.++...+.++++.+-+..+|-+.-+.||+.+.+.+. +-.|.+.|.+.|+..+... .+.+|..++.
T Consensus 531 ~l~l~~Iq~VLq~LL~E~VSIRdL~tIlEaLad~a~------------~~kD~~~LtE~VR~aL~Rq--I~~~~~~~~g~ 596 (697)
T PRK06012 531 VLSLGTLQKVLQNLLKERVSIRDLRTILETLADYAP------------ITKDPDELTEHVRQRLGRQ--IVQQYKGEDGE 596 (697)
T ss_pred cCCHHHHHHHHHHHHhCCCccccHHHHHHHHHHHhc------------cCCCHHHHHHHHHHHHHHH--HHHHhcCCCCe
Confidence 467788888888888888888888888888765321 1245667777777777743 5666654322
Q ss_pred --------chhhHHHhHHhhhcCCC---CChHHHHHHHHH
Q 043020 530 --------KLQGFFAGQVMKISKGK---ANPGLLNKILLE 558 (564)
Q Consensus 530 --------k~~gflmGqVMk~tkGk---AdPk~V~~il~e 558 (564)
.....+...+-+...|. .||...++++++
T Consensus 597 L~vi~L~p~lE~~l~~si~~t~~g~~laLdP~~~~~li~~ 636 (697)
T PRK06012 597 LPVITLDPELEQLLLQSLQGTGGGSYLALEPGLAERLLQS 636 (697)
T ss_pred eEEEEECHHHHHHHHHHHhhccCCCccCcCHHHHHHHHHH
Confidence 23334444333222342 578777777654
No 23
>COG4050 Uncharacterized protein conserved in archaea [Function unknown]
Probab=44.13 E-value=36 Score=31.49 Aligned_cols=39 Identities=26% Similarity=0.536 Sum_probs=32.3
Q ss_pred eeecCCCCceeEEeeCCCCCCHHHHHHHHHHHHHHHHHhCcc
Q 043020 226 VDLNRAGVPLLEIVSEPDMRTGLEAAEYAAELQRLVRYLGVS 267 (564)
Q Consensus 226 vD~NRaGvPLiEIVTePd~~s~~EA~~~~~~L~~ilr~lgvs 267 (564)
+=.-|-|+|.+|+- -| +|-|||..|+.++...|..|...
T Consensus 112 ylvR~k~iPiLelk-YP--~s~Eea~~~VnkI~~FL~sLe~~ 150 (152)
T COG4050 112 YLVRRKGIPILELK-YP--RSEEEAIDFVNKIANFLKSLEAQ 150 (152)
T ss_pred HHhhhcCCceEEEe-CC--CcHHHHHHHHHHHHHHHHhhhhh
Confidence 44578999999974 44 68899999999999999988543
No 24
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=38.07 E-value=1.5e+02 Score=23.84 Aligned_cols=38 Identities=26% Similarity=0.240 Sum_probs=20.8
Q ss_pred cCCHHHHHHHHHHHHcCccchHHHHHHHHHHHHcCCCH
Q 043020 451 KLSAAELAELIASIKGATISGKIGKEILFELMAKGGTV 488 (564)
Q Consensus 451 ~ispe~LaeLI~li~~g~IS~k~AK~il~~ll~~~~~~ 488 (564)
.++.++...++..|-+|.++.-+.-..|-.+...+.++
T Consensus 14 ~Ls~~e~~~~~~~i~~g~~s~~qiaAfL~al~~kget~ 51 (66)
T PF02885_consen 14 DLSREEAKAAFDAILDGEVSDAQIAAFLMALRMKGETP 51 (66)
T ss_dssp ---HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH---H
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCcCH
Confidence 46778888888888888877666545555544444443
No 25
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=36.73 E-value=2.6e+02 Score=26.80 Aligned_cols=48 Identities=27% Similarity=0.381 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHcCccchHHHHHHHHHHHHcCCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhC
Q 043020 452 LSAAELAELIASIKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSEN 517 (564)
Q Consensus 452 ispe~LaeLI~li~~g~IS~k~AK~il~~ll~~~~~~~~IIee~~l~qisD~~eL~~lV~eVi~~n 517 (564)
+++++..++++.. ++-+++-.++|++.++++++.| |++++ .++++++.
T Consensus 17 lp~~e~~e~l~~Y----------~e~f~d~~~~G~sEeeii~~LG-----~P~~i---A~~i~~~~ 64 (181)
T PF08006_consen 17 LPEEEREEILEYY----------EEYFDDAGEEGKSEEEIIAELG-----SPKEI---AREILAEY 64 (181)
T ss_pred CCHHHHHHHHHHH----------HHHHHHhhhCCCCHHHHHHHcC-----CHHHH---HHHHHHhh
Confidence 5677777777655 4666676677889999999998 46554 56666655
No 26
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=35.66 E-value=84 Score=24.47 Aligned_cols=35 Identities=26% Similarity=0.296 Sum_probs=29.1
Q ss_pred CceeEEeeCCCCCCHHHHHHHHHHHHH-HHHHhCccc
Q 043020 233 VPLLEIVSEPDMRTGLEAAEYAAELQR-LVRYLGVSN 268 (564)
Q Consensus 233 vPLiEIVTePd~~s~~EA~~~~~~L~~-ilr~lgvs~ 268 (564)
||+++|-.-+. +|.++-.++.+.|.. +.+.+|+..
T Consensus 1 MP~i~I~~~~g-rs~eqk~~l~~~it~~l~~~~~~p~ 36 (62)
T PRK00745 1 MPTFHIELFEG-RTVEQKRKLVEEITRVTVETLGCPP 36 (62)
T ss_pred CCEEEEEEcCC-CCHHHHHHHHHHHHHHHHHHcCCCh
Confidence 79999997776 799999999999977 556677654
No 27
>COG3495 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.40 E-value=15 Score=34.75 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=23.3
Q ss_pred CCCCCCCceeccCCcceeeccEEEEec
Q 043020 153 YPDLPKGYQISQFDIPIATGGYLDVDL 179 (564)
Q Consensus 153 YpDlPkGYQITQ~~~PI~~~G~i~~~~ 179 (564)
|---|||||+++.+.|+...|.+.++.
T Consensus 115 ~Vk~~kg~km~elyqp~wV~GtlK~e~ 141 (166)
T COG3495 115 LVKPAKGYKMSELYQPVWVTGTLKPEI 141 (166)
T ss_pred EEecCCCccHhHhhceeEEeeeechhh
Confidence 444699999999999999999998763
No 28
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=34.76 E-value=3.1e+02 Score=28.46 Aligned_cols=109 Identities=14% Similarity=0.251 Sum_probs=63.1
Q ss_pred HHHHHhChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhcCCCcccccCCHHHHHHHHHHHHcCccchHHHHHHHHH
Q 043020 402 VLFLANDINVARFFDATIEKG-ADVKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELIASIKGATISGKIGKEILFE 480 (564)
Q Consensus 402 A~~L~~d~~la~yFE~~v~~~-~~pk~vaNWi~~ell~~L~~~~~~i~~~~ispe~LaeLI~li~~g~IS~k~AK~il~~ 480 (564)
|..++.|.+--..|+++-... .+.....+|+ ++...+-+ +||-+.+.+.-...+ =|-...++++..
T Consensus 65 ~y~iLsDeekR~~YDetG~idd~~~d~~~~~~--e~~~~iyk--------~VteedIeef~a~Y~---gSEeEk~Dl~~~ 131 (264)
T KOG0719|consen 65 AYQILSDEEKRAVYDETGSIDDESGDIDEDWL--EFWRAIYK--------KVTEEDIEEFEANYQ---GSEEEKKDLLKL 131 (264)
T ss_pred HHHHhhHHHHHHHHhccCCCCCccchhhhHHH--HHHHHHHh--------hcccccHHHHHHHhc---ccHHHHHHHHHH
Confidence 445566666666777765432 1234556665 33333222 234444443333221 133445666666
Q ss_pred HHHcCCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhChHHHHHhh
Q 043020 481 LMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYR 525 (564)
Q Consensus 481 ll~~~~~~~~IIee~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk 525 (564)
.....+....|++....-.+.|++.+.++|+++|+.- +|.+|+
T Consensus 132 Y~k~kG~m~~i~~~~l~~d~~De~R~keiid~~I~~G--ev~~yK 174 (264)
T KOG0719|consen 132 YNKFKGKMNRILESVLCSDPKDEDRFKEIIDEAIADG--EVKKYK 174 (264)
T ss_pred HHhcCChHHHHHHhhhcCCcccHHHHHHHHHHHHhcC--Cchhhh
Confidence 5555667777777777777789999999999999853 344443
No 29
>TIGR01398 FlhA flagellar biosynthesis protein FlhA. This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model.
Probab=34.48 E-value=5.1e+02 Score=30.74 Aligned_cols=92 Identities=16% Similarity=0.242 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHcCccchHHHHHHHHHHHHcCCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhChHHHHHhhcCcc--
Q 043020 452 LSAAELAELIASIKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKT-- 529 (564)
Q Consensus 452 ispe~LaeLI~li~~g~IS~k~AK~il~~ll~~~~~~~~IIee~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk~Gk~-- 529 (564)
++...+.+++..+-+..+|-+.-+.|++.+.+... +-.|.+.|.+.|+..+... .+.+|..++.
T Consensus 516 ~~l~~l~~VLq~LL~E~VsIRdl~tIlE~l~d~~~------------~~kd~~~LtE~VR~~L~r~--I~~~~~~~~~~L 581 (678)
T TIGR01398 516 VPLGTIQKVLQLLLRERVSIRNLPTILETLADYAP------------ITKDPDLLVEHVRQRLGRQ--ITQQYLDEDGVL 581 (678)
T ss_pred CCHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhc------------cCCCHHHHHHHHHHHHHHH--HHHHHhCCCCee
Confidence 66778888888888888888887777777764321 1235677777777777743 5666654322
Q ss_pred -------chhhHHHhHHhhhc-CC---CCChHHHHHHHHH
Q 043020 530 -------KLQGFFAGQVMKIS-KG---KANPGLLNKILLE 558 (564)
Q Consensus 530 -------k~~gflmGqVMk~t-kG---kAdPk~V~~il~e 558 (564)
.....+ .+-.+.+ .| ..||...++++++
T Consensus 582 ~vi~l~p~~E~~l-~~~i~~~~~g~~~~l~P~~~~~l~~~ 620 (678)
T TIGR01398 582 PVITLDPDLEAAL-AEALQRDGEGELLDLEPALLEELVRA 620 (678)
T ss_pred EEEEeCHHHHHHH-HHHHhccCCCCccCcCHHHHHHHHHH
Confidence 223344 3334443 45 3678887777654
No 30
>PRK12720 secretion system apparatus protein SsaV; Provisional
Probab=34.17 E-value=5e+02 Score=30.77 Aligned_cols=93 Identities=14% Similarity=0.197 Sum_probs=56.6
Q ss_pred cCCHHHHHHHHHHHHcCccchHHHHHHHHHHHHcCCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhChHHHHHhhcCcc-
Q 043020 451 KLSAAELAELIASIKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKT- 529 (564)
Q Consensus 451 ~ispe~LaeLI~li~~g~IS~k~AK~il~~ll~~~~~~~~IIee~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk~Gk~- 529 (564)
.++...+.+++..+-+..+|-+.-+.|++.+.+.+. +..|.+.|.+.|+..+..+ ...+|..+..
T Consensus 510 ~l~l~~i~~VLq~LL~E~VsIRdl~tIlE~l~d~~~------------~~kd~~~LtE~VR~~L~r~--I~~~~~~~~~~ 575 (675)
T PRK12720 510 QLPVGKIAEILQRLVSERVSIRDLRTIFGTLVEWAP------------REKDVVMLTEYVRIALRRH--ILRRFNHEGKW 575 (675)
T ss_pred cCCHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhc------------ccCCHHHHHHHHHHHHHHH--HHHHhcCCCCe
Confidence 356777888888888888888887888777765321 1235666777777777643 5556653221
Q ss_pred --------chhhHHHhHHhhhc-CCC---CChHHHHHHHHH
Q 043020 530 --------KLQGFFAGQVMKIS-KGK---ANPGLLNKILLE 558 (564)
Q Consensus 530 --------k~~gflmGqVMk~t-kGk---AdPk~V~~il~e 558 (564)
.....+ .+-++.+ .|. .||...++++.+
T Consensus 576 l~vi~l~p~~E~~l-~~~i~~~~~g~~~~l~P~~~~~l~~~ 615 (675)
T PRK12720 576 LPVLRIGEGIENLI-RESIRQTSAGTYSALSSRHSTQILQL 615 (675)
T ss_pred eEEEEeCHHHHHHH-HHHHhcccCCCccccCHHHHHHHHHH
Confidence 223333 4444444 453 578887777654
No 31
>PF15399 DUF4620: Domain of unknown function (DUF4620)
Probab=32.46 E-value=13 Score=32.46 Aligned_cols=31 Identities=42% Similarity=0.801 Sum_probs=23.6
Q ss_pred CCCccCceecCCCCCCccCCHHHHHHHHHHHHHcCCccC
Q 043020 103 PNTSVCPICMGLPGALPVVNSKVVEFAVKLGLALNCKLS 141 (564)
Q Consensus 103 PNt~vc~v~lg~PGtLP~lN~~av~~Ai~~~lALnc~I~ 141 (564)
|.=..|--|+|+||.|| +||.+|.+|+-+-.
T Consensus 65 ~hwlac~ccl~lp~qlp--------lai~lg~~ldl~~~ 95 (113)
T PF15399_consen 65 PHWLACCCCLSLPGQLP--------LAIWLGWDLDLESS 95 (113)
T ss_pred chhhhhheeeccCCcCc--------eeeeeccccccccC
Confidence 34455778999999999 48889988876543
No 32
>PHA01082 putative transcription regulator
Probab=32.39 E-value=17 Score=33.58 Aligned_cols=56 Identities=18% Similarity=0.222 Sum_probs=43.5
Q ss_pred CeeeEEEeEeeeccccccccccCCCCCccccccccccceeeeecCCCCceeEEeeCCCCCCHHHHHHHHHHHHHH
Q 043020 186 GHRRFGITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNRAGVPLLEIVSEPDMRTGLEAAEYAAELQRL 260 (564)
Q Consensus 186 ~~k~i~I~rihLEEDagK~~h~~~~~~~~~~~~~~~~~~lvD~NRaGvPLiEIVTePd~~s~~EA~~~~~~L~~i 260 (564)
.+..+++..=.||=-||.++-.. ..+ +|++|+||-.++|+......-.|++.|.++
T Consensus 77 ~W~~FrM~~~rLelPTGq~VtpQ---qIL----------------tGiALLEIgAe~D~~~~~kiLKyAR~L~~i 132 (133)
T PHA01082 77 EWWGFRMEGGRLIFPTGDRVAPQ---QLL----------------AAIAILQIQAPDDAMTRSKLLKYARAMARI 132 (133)
T ss_pred hhhhhhhccCceecCCcCcccHH---HHH----------------HHhHhhhccCcchHHHHHHHHHHHHHHHhc
Confidence 45667777777777788776431 122 799999999999999999988888888765
No 33
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=31.38 E-value=68 Score=24.01 Aligned_cols=34 Identities=26% Similarity=0.403 Sum_probs=24.4
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHhChHHHHHhh
Q 043020 491 IIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYR 525 (564)
Q Consensus 491 IIee~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk 525 (564)
++..+.-..++ ..++.+.|...+..||+.++++.
T Consensus 10 il~~y~~~~~~-~~~v~~~v~~Ll~~hpdLl~~F~ 43 (47)
T PF02671_consen 10 ILNDYKKGRIS-RSEVIEEVSELLRGHPDLLEEFN 43 (47)
T ss_dssp HHHHHHCTCSC-HHHHHHHHHHHTTT-HHHHHHHH
T ss_pred HHHHHHhcCCC-HHHHHHHHHHHHccCHHHHHHHH
Confidence 44444444444 77788889999999999998876
No 34
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=31.29 E-value=2.8e+02 Score=31.47 Aligned_cols=103 Identities=8% Similarity=0.032 Sum_probs=58.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhC-------------------------------------hhhHHHHHHHHHhcCCHHHH
Q 043020 386 EMKRRRYEEMGLSMQDVLFLAND-------------------------------------INVARFFDATIEKGADVKLA 428 (564)
Q Consensus 386 ~~~~~Rl~~ygLs~~dA~~L~~d-------------------------------------~~la~yFE~~v~~~~~pk~v 428 (564)
....++|.+-|.++++|..++.. ..+...|+++.+.-.+...+
T Consensus 233 ~~~Fe~lve~G~~pe~A~k~~~~~~E~I~e~i~e~GI~~m~d~~S~tak~ga~~~~~~~k~~m~p~f~~~~~~I~sG~fa 312 (487)
T PRK05225 233 LLCFDKLVAEGTDPAYAEKLIQFGWETITEALKQGGITLMMDRLSNPAKIRAFELSEQLKEIMAPLFQKHMDDIISGEFS 312 (487)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhhhHHHHHHHHHhccHHHHHHhccchhhcccccccHHHHHHHHHHHHHHHHHhhccHHH
Confidence 44567777779999999754311 01234455555444444455
Q ss_pred HHHHHH------HHHHHHHh-cCCCcccccCCHHHHHHHHHHHHcCccchHHHHHH----HHHHHHcCCCHH
Q 043020 429 ANWIMG------DIAAYMKN-EKLTINEIKLSAAELAELIASIKGATISGKIGKEI----LFELMAKGGTVK 489 (564)
Q Consensus 429 aNWi~~------ell~~L~~-~~~~i~~~~ispe~LaeLI~li~~g~IS~k~AK~i----l~~ll~~~~~~~ 489 (564)
.+|+.. +|+.+.++ .+.+++.++++...+.+ -.+.+.|.+=+.+.|.. |+.|++.|-+|+
T Consensus 313 k~~m~d~~~~~~~l~~~r~~~~~~~~E~~~~~~~~~~~-~~~~erG~Lm~a~~~~g~e~~FEtLveaGy~PE 383 (487)
T PRK05225 313 STMMADWANDDKKLLTWREETGKTAFENAPQYEGKISE-QEYFDKGVLMVAMVKAGVELAFETMVDSGIIEE 383 (487)
T ss_pred HHHHHHHhcCChHHHHHHHHhhcCchhhcccccccchh-HHHHhhhhHHHHHHHhhhHHHHHHHHHcCCCHH
Confidence 555521 22333332 23456666665443332 24667787777787877 777877776554
No 35
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=31.05 E-value=1.1e+02 Score=23.83 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=29.4
Q ss_pred CceeEEeeCCCCCCHHHHHHHHHHHHHHH-HHhCcccC
Q 043020 233 VPLLEIVSEPDMRTGLEAAEYAAELQRLV-RYLGVSNG 269 (564)
Q Consensus 233 vPLiEIVTePd~~s~~EA~~~~~~L~~il-r~lgvs~g 269 (564)
||+|.|..-+. ||.++-+++++.|...+ +.+|+...
T Consensus 1 MP~i~i~~~~G-rs~eqk~~l~~~it~~l~~~~~~p~~ 37 (61)
T PRK02220 1 MPYVHIKLIEG-RTEEQLKALVKDVTAAVSKNTGAPAE 37 (61)
T ss_pred CCEEEEEEcCC-CCHHHHHHHHHHHHHHHHHHhCcChh
Confidence 79999988786 89999999999997754 57777643
No 36
>TIGR01399 hrcV type III secretion protein, HrcV family. Members of this family are closely homologous to the flagellar biosynthesis protein FlhA (TIGR01398) and should all participate in type III secretion systems. Examples include InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc. Type III secretion systems resemble flagellar biogenesis systems, and may share the property of translocating special classes of peptides through the membrane.
Probab=29.74 E-value=8e+02 Score=29.17 Aligned_cols=154 Identities=14% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCcccccCCHHHHHHHH
Q 043020 385 PEMKRRRYEEMGLSMQDVLFLANDINVARFFDATIEKGAD---VKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELI 461 (564)
Q Consensus 385 P~~~~~Rl~~ygLs~~dA~~L~~d~~la~yFE~~v~~~~~---pk~vaNWi~~ell~~L~~~~~~i~~~~ispe~LaeLI 461 (564)
+++.+++.+..|.+.-|+... ++....++++..+. ..+=+..++..+...-.+.-.++ ...++...+.+++
T Consensus 451 ~~~~~~~a~~~Gytvvd~~sv-----i~thl~e~i~~~a~ellgrqe~~~Lld~l~~~~p~Lv~El-p~~~~l~~i~~VL 524 (677)
T TIGR01399 451 TEEGAEKLQGAGLGYFSDSQV-----ITHRLKATLLRNAQEFIGIQETRYLLDQMEREYPELVKEV-QRVLPLQRIAEVL 524 (677)
T ss_pred CHHHHHHHHHcCCeEEcHHHH-----HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH-hccCCHHHHHHHH
Q ss_pred HHHHcCccchHHHHHHHHHHHHcCCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhChHHHHHhhcCccc--------hhh
Q 043020 462 ASIKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTK--------LQG 533 (564)
Q Consensus 462 ~li~~g~IS~k~AK~il~~ll~~~~~~~~IIee~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk~Gk~k--------~~g 533 (564)
..+-...+|-+.-..+++.+.+.+ .+-.|.+.|.+.|+..+... ...+|...... .+-
T Consensus 525 q~LL~E~VsIRdl~~IlEtLad~~------------~~~~d~~~LtE~VR~~L~r~--I~~~~~~~~~~l~vi~l~p~~E 590 (677)
T TIGR01399 525 QRLVSEQVSIRNLRLILETLIEWA------------QREKDVVMLTEYVRIALKRY--ICHRYANGGRQLSAVLIDPEIE 590 (677)
T ss_pred HHHHhCCCccccHHHHHHHHHHHh------------ccCCCHHHHHHHHHHHHHHH--HHHHHhCCCCeeEEEEeCHHHH
Q ss_pred HHHhHHhhhc-CCC---CChHHHHHHHHH
Q 043020 534 FFAGQVMKIS-KGK---ANPGLLNKILLE 558 (564)
Q Consensus 534 flmGqVMk~t-kGk---AdPk~V~~il~e 558 (564)
..+.+-++.+ .|. .||...++++.+
T Consensus 591 ~~l~~~i~~~~~g~~~~l~p~~~~~li~~ 619 (677)
T TIGR01399 591 ELIRGAIRQTSTGTYLALDPDDSEQLLDQ 619 (677)
T ss_pred HHHHHHHhccCCCCccccCHHHHHHHHHH
No 37
>PF10877 DUF2671: Protein of unknown function (DUF2671); InterPro: IPR022715 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=28.96 E-value=47 Score=27.92 Aligned_cols=32 Identities=28% Similarity=0.591 Sum_probs=24.2
Q ss_pred CCCCCceeccCCcceeeccEEEEecccccCCCeeeEEEeEeeecccc
Q 043020 155 DLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFGITRVHMEEDA 201 (564)
Q Consensus 155 DlPkGYQITQ~~~PI~~~G~i~~~~~~~~~~~~k~i~I~rihLEEDa 201 (564)
..-|||..||. .||-+.+. .|||-.+|--=.+
T Consensus 40 sirkgydvtql-----~ngdinvt----------eirivnvhynwns 71 (90)
T PF10877_consen 40 SIRKGYDVTQL-----PNGDINVT----------EIRIVNVHYNWNS 71 (90)
T ss_pred hhhcccceeec-----cCCCcceE----------EEEEEEEEecccc
Confidence 35789999997 67888764 4899988875443
No 38
>PRK15337 type III secretion system protein InvA; Provisional
Probab=27.02 E-value=6.7e+02 Score=29.86 Aligned_cols=92 Identities=14% Similarity=0.178 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHcCccchHHHHHHHHHHHHcCCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhChHHHHHhh-cCccc
Q 043020 452 LSAAELAELIASIKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYR-GGKTK 530 (564)
Q Consensus 452 ispe~LaeLI~li~~g~IS~k~AK~il~~ll~~~~~~~~IIee~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk-~Gk~k 530 (564)
++...+.+++..+-+..+|-+.-..|++.+.+.+. +..|.+.|.+.|++.+... .+.+|. .|.-+
T Consensus 525 l~l~~i~~VLq~LL~E~VsIRdl~~IlE~l~d~~~------------~~kd~~~LtE~VR~~L~r~--I~~~~~~~g~L~ 590 (686)
T PRK15337 525 ATVQRISEVLQRLLSERISIRNMKLIMEALALWAP------------REKDVIMLVEHVRGALARY--ICHKFAAGGELR 590 (686)
T ss_pred CCHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhc------------cCCCHHHHHHHHHHHHHHH--HHHHhccCCceE
Confidence 56677777777777777887777777777664321 1235666666676666643 445553 23221
Q ss_pred -------hhhHHHhHHhhhc-CCC---CChHHHHHHHHH
Q 043020 531 -------LQGFFAGQVMKIS-KGK---ANPGLLNKILLE 558 (564)
Q Consensus 531 -------~~gflmGqVMk~t-kGk---AdPk~V~~il~e 558 (564)
....+ .+-++.+ .|. -||...++++++
T Consensus 591 vi~L~~~~E~~l-~~~i~~~~~g~~~~l~P~~~~~l~~~ 628 (686)
T PRK15337 591 AVVLSAEVEDAI-RKGIRQTSGGTFLNLDPAESENLMDL 628 (686)
T ss_pred EEEeCHHHHHHH-HHHHhcccCCCccCcCHHHHHHHHHH
Confidence 22333 3333443 443 577777777654
No 39
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=26.96 E-value=2e+02 Score=20.35 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=23.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhChhhHHHHHHHHHhcCCHHHHHHHH
Q 043020 385 PEMKRRRYEEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWI 432 (564)
Q Consensus 385 P~~~~~Rl~~ygLs~~dA~~L~~d~~la~yFE~~v~~~~~pk~vaNWi 432 (564)
+++..+.+.++|++..++..- +...+.|...|.+||
T Consensus 2 ~~~~v~~L~~mGf~~~~~~~A------------L~~~~~nve~A~~~L 37 (37)
T PF00627_consen 2 DEEKVQQLMEMGFSREQAREA------------LRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHHHHTS-HHHHHHH------------HHHTTTSHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHH------------HHHcCCCHHHHHHhC
Confidence 355667778889998877532 223345777888886
No 40
>PF09987 DUF2226: Uncharacterized protein conserved in archaea (DUF2226); InterPro: IPR019249 This entry includes hypothetical proteins of unknown function.
Probab=26.95 E-value=1.9e+02 Score=30.81 Aligned_cols=51 Identities=16% Similarity=0.202 Sum_probs=41.8
Q ss_pred cCccchHHHHHHHHHHHHcC--CCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhC
Q 043020 466 GATISGKIGKEILFELMAKG--GTVKGIIIEKDLVQIVDPSEIEKMVDKVLSEN 517 (564)
Q Consensus 466 ~g~IS~k~AK~il~~ll~~~--~~~~~IIee~~l~qisD~~eL~~lV~eVi~~n 517 (564)
.+...++.|.+.+.+++... -+-+++++++|.+..+ ++.++.++++++.-.
T Consensus 156 ~~~~~gk~A~e~~eEii~E~~slsReeLLKklgIk~p~-ee~Ie~lle~~f~ps 208 (297)
T PF09987_consen 156 NKEPFGKSAKEEFEEIIKEENSLSREELLKKLGIKEPD-EEEIENLLEDYFEPS 208 (297)
T ss_pred cccccchhHHHHHHHHhcCCccCCHHHHHHHhCCCCCC-HHHHHHHHHHHHhhc
Confidence 35567788999999998654 4788999999999888 678999999999843
No 41
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=26.52 E-value=3.1e+02 Score=24.75 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 043020 412 ARFFDATIEKGADVKLAANWIMGDIAAYMKNEKLT 446 (564)
Q Consensus 412 a~yFE~~v~~~~~pk~vaNWi~~ell~~L~~~~~~ 446 (564)
..|||.+-.++.+-+....|++.+|...+.+.|++
T Consensus 62 VR~lE~vK~K~~~~~~~y~~~lqeikp~l~ELGI~ 96 (103)
T cd00923 62 VRILEAIKDKCGAHKEIYPYILQEIKPTLKELGIS 96 (103)
T ss_pred HHHHHHHHHHccCchhhHHHHHHHHhHHHHHHCCC
Confidence 36677665566556778999999999999999876
No 42
>PRK12792 flhA flagellar biosynthesis protein FlhA; Reviewed
Probab=26.08 E-value=8.4e+02 Score=29.09 Aligned_cols=155 Identities=12% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCcccccCCHHHHHHHH
Q 043020 385 PEMKRRRYEEMGLSMQDVLFLANDINVARFFDATIEKGAD---VKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELI 461 (564)
Q Consensus 385 P~~~~~Rl~~ygLs~~dA~~L~~d~~la~yFE~~v~~~~~---pk~vaNWi~~ell~~L~~~~~~i~~~~ispe~LaeLI 461 (564)
+++.+++.+..|...-|.... ++..+.++++..+. ..+-...++..+...-.+.=.++-.-.++...+.+++
T Consensus 465 ~~~~~~~a~~~Gytvvd~~sv-----i~tHl~evi~~~a~ellgrqev~~Lld~l~~~~p~Lveelvp~~~~l~~l~~VL 539 (694)
T PRK12792 465 PDAFANEVRRDGFEPVDNASV-----LLTHLSEVIRNNLPQLLSYKDMRALLDRLDPEYKRLIDDICPSQISYSGLQAVL 539 (694)
T ss_pred CHHHHHHHHHCCCEEEcHHHH-----HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhChHHHHHhcccCCCHHHHHHHH
Q ss_pred HHHHcCccchHHHHHHHHHHHHcCCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhChHHHHHhhcC--------ccchhh
Q 043020 462 ASIKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGG--------KTKLQG 533 (564)
Q Consensus 462 ~li~~g~IS~k~AK~il~~ll~~~~~~~~IIee~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk~G--------k~k~~g 533 (564)
..+-...+|-+.-+.|++.+.+.+ .+..|.+.|.+.|+..+... .+.+|..+ ..+...
T Consensus 540 q~LL~E~VsIRdl~tIlEtL~d~~------------~~~~d~~~LtE~VR~~L~r~--I~~~~~~~g~l~vi~L~p~~E~ 605 (694)
T PRK12792 540 KLLLAERVSIRNLHLILEAVAEIA------------PHARRAEQIAEHVRMRIAQQ--ICGDLSDNGVLKVLRLGNRWDL 605 (694)
T ss_pred HHHHHcCCccccHHHHHHHHHHHh------------cccCCHHHHHHHHHHHHHHH--HHHHhccCCceEEEEeCHHHHH
Q ss_pred HHHhHHhhhcCCC-----CChHHHHHHHHH
Q 043020 534 FFAGQVMKISKGK-----ANPGLLNKILLE 558 (564)
Q Consensus 534 flmGqVMk~tkGk-----AdPk~V~~il~e 558 (564)
.|...+-+...|. .||..+++++.+
T Consensus 606 ~l~~~i~~~~~g~~l~~~l~p~~~~~l~~~ 635 (694)
T PRK12792 606 AFHQSLKRDAKGEVVEFDIDPRLVEQFGTE 635 (694)
T ss_pred HHHHHHhcccCCCccccCCCHHHHHHHHHH
No 43
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=24.98 E-value=1.8e+02 Score=20.32 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=23.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhChhhHHHHHHHHHhcCCHHHHHHHHH
Q 043020 386 EMKRRRYEEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIM 433 (564)
Q Consensus 386 ~~~~~Rl~~ygLs~~dA~~L~~d~~la~yFE~~v~~~~~pk~vaNWi~ 433 (564)
++..+++.++|++...+..-+ ...+.|...|++||+
T Consensus 2 ~~~v~~L~~mGf~~~~~~~AL------------~~~~~d~~~A~~~L~ 37 (38)
T cd00194 2 EEKLEQLLEMGFSREEARKAL------------RATNNNVERAVEWLL 37 (38)
T ss_pred HHHHHHHHHcCCCHHHHHHHH------------HHhCCCHHHHHHHHh
Confidence 345677788999977775332 122357788888875
No 44
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=24.94 E-value=1.8e+02 Score=24.19 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHcCccchHHHHHHHHHHHHcCCCHHHHHHhc
Q 043020 452 LSAAELAELIASIKGATISGKIGKEILFELMAKGGTVKGIIIEK 495 (564)
Q Consensus 452 ispe~LaeLI~li~~g~IS~k~AK~il~~ll~~~~~~~~IIee~ 495 (564)
.+|+.+.++++.+.++ +-..++..+.+++..|-++.+|+.+.
T Consensus 3 p~~~~i~~i~~~~~~~--~~~~~~~~~~~l~~~G~s~~~Il~~l 44 (89)
T PF08542_consen 3 PPPEVIEEILESCLNG--DFKEARKKLYELLVEGYSASDILKQL 44 (89)
T ss_dssp --HHHHHHHHHHHHHT--CHHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhC--CHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 4789999999999988 55667888888887787888888775
No 45
>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed
Probab=24.76 E-value=6.5e+02 Score=24.66 Aligned_cols=86 Identities=12% Similarity=0.148 Sum_probs=36.2
Q ss_pred cCCCHHHHHHHHhChhhHHHHHHHHHh---------cCCHHHHHHHHHHHHHHHHHhcCCCcccccCCHHHHHHHHHHHH
Q 043020 395 MGLSMQDVLFLANDINVARFFDATIEK---------GADVKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELIASIK 465 (564)
Q Consensus 395 ygLs~~dA~~L~~d~~la~yFE~~v~~---------~~~pk~vaNWi~~ell~~L~~~~~~i~~~~ispe~LaeLI~li~ 465 (564)
-|+.+.-|..|++.-..-.+.+++.+. |-.++.+- -|+.++...+................+.+++..+.
T Consensus 79 ~GIGpk~A~~il~~fg~~~l~~~i~~~d~~~L~~v~Gig~k~A~-~I~~~l~~~~~~~~~~~~~~~~~~~~~~ev~~aL~ 157 (192)
T PRK00116 79 SGVGPKLALAILSGLSPEELVQAIANGDVKALTKVPGIGKKTAE-RIVLELKDKLAAAASAAAAAAAASSALEEAVSALV 157 (192)
T ss_pred CCCCHHHHHHHHHhCCHHHHHHHHHhCCHHHHHhCCCCCHHHHH-HHHHHHHHHhhcccccccccccccchHHHHHHHHH
Confidence 366677776666543332333333321 23344444 44455655443211000000001112344555444
Q ss_pred cCccchHHHHHHHHHH
Q 043020 466 GATISGKIGKEILFEL 481 (564)
Q Consensus 466 ~g~IS~k~AK~il~~l 481 (564)
.=-++.+.|..++..+
T Consensus 158 ~LG~~~~~a~~~~~~~ 173 (192)
T PRK00116 158 ALGYKPKEASKAVAKI 173 (192)
T ss_pred HcCCCHHHHHHHHHHH
Confidence 4445555555555544
No 46
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=23.61 E-value=1.2e+02 Score=32.76 Aligned_cols=112 Identities=19% Similarity=0.224 Sum_probs=63.1
Q ss_pred ChhhHHHHHHHHHhcC-----CHHHHHHHHHHHHHH-----------HHHhcCC-Cccccc--CCHHHHHHHHHHHHcCc
Q 043020 408 DINVARFFDATIEKGA-----DVKLAANWIMGDIAA-----------YMKNEKL-TINEIK--LSAAELAELIASIKGAT 468 (564)
Q Consensus 408 d~~la~yFE~~v~~~~-----~pk~vaNWi~~ell~-----------~L~~~~~-~i~~~~--ispe~LaeLI~li~~g~ 468 (564)
||.+-+|+..++..|. .+...-+|=+-..-+ +|....- .-..-| +.--=|++++.+.-..-
T Consensus 238 dP~LGKY~~TAC~rC~t~y~le~A~~~~wrCpkCGg~ikKGV~dRv~ELad~~~~~p~~RPPYlhliPLaeIi~~~~g~g 317 (403)
T COG1379 238 DPRLGKYHLTACSRCYTRYSLEEAKSLRWRCPKCGGKIKKGVSDRVLELADTEPEHPKHRPPYLHLIPLAEIISMALGKG 317 (403)
T ss_pred CccccchhHHHHHHhhhccCcchhhhhcccCcccccchhhhHHHHHHHhhccCcccCCCCCCceecccHHHHHHHHhccc
Confidence 4567788888887765 455555665433222 2222110 000000 11123888888777766
Q ss_pred cchHHHHHHHHHHHHcCCC-HHHHHHhcCCCCCCCHHHHHHHHHHHHHhChHHHHHhhcCccc
Q 043020 469 ISGKIGKEILFELMAKGGT-VKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTK 530 (564)
Q Consensus 469 IS~k~AK~il~~ll~~~~~-~~~IIee~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk~Gk~k 530 (564)
|+.|..|.+.+.++..=++ .+.+++. ..++|..+..+| .+++..||+||--
T Consensus 318 i~tK~V~~~we~lv~~FGtEi~vLi~a-------~~e~La~V~~~v----A~aI~~~R~Gkl~ 369 (403)
T COG1379 318 ITTKAVKRTWERLVRAFGTEIDVLIDA-------PIEELARVDPKV----AEAIVAFRNGKLI 369 (403)
T ss_pred eechhHHHHHHHHHHHhcchhhhHhcC-------CHHHHhhhhHHH----HHHHHHHhcCCEE
Confidence 9999999999888865443 3333332 245555544433 3467788998753
No 47
>PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=23.17 E-value=6.8e+02 Score=24.82 Aligned_cols=47 Identities=17% Similarity=0.109 Sum_probs=32.8
Q ss_pred cCCCHHHHHHHHhChhhHHHHHHHHHh---------cCCHHHHHHHHHHHHHHHHHh
Q 043020 395 MGLSMQDVLFLANDINVARFFDATIEK---------GADVKLAANWIMGDIAAYMKN 442 (564)
Q Consensus 395 ygLs~~dA~~L~~d~~la~yFE~~v~~---------~~~pk~vaNWi~~ell~~L~~ 442 (564)
-|+.+.-|..+++.-...++.+++.+. |-- +..|.=|+.||.+.+..
T Consensus 79 ~GIGpK~Al~iLs~~~~~el~~aI~~~D~~~L~kvpGIG-kKtAerIilELk~K~~~ 134 (195)
T PRK14604 79 SGVGPKAALNLLSSGTPDELQLAIAGGDVARLARVPGIG-KKTAERIVLELKGKIDV 134 (195)
T ss_pred CCcCHHHHHHHHcCCCHHHHHHHHHhCCHHHHhhCCCCC-HHHHHHHHHHHHHHhcc
Confidence 699999999999876666777776643 122 34556666788877753
No 48
>PF07390 P30: Mycoplasma P30 protein; InterPro: IPR009975 This family consists of several P30 proteins which seem to be specific to Mycoplasma agalactiae. P30 is a 30 kDa immunodominant antigen and is known to be a transmembrane protein [].
Probab=23.14 E-value=96 Score=31.05 Aligned_cols=16 Identities=56% Similarity=0.943 Sum_probs=14.7
Q ss_pred CCCCCceeccCCccee
Q 043020 155 DLPKGYQISQFDIPIA 170 (564)
Q Consensus 155 DlPkGYQITQ~~~PI~ 170 (564)
-||+||.|.-.+.||-
T Consensus 199 glp~~ysia~~~~p~~ 214 (266)
T PF07390_consen 199 GLPKGYSIANADSPIY 214 (266)
T ss_pred cCCCCceecccCCcce
Confidence 5999999999999986
No 49
>PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1.1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B ....
Probab=23.13 E-value=3.8e+02 Score=23.63 Aligned_cols=71 Identities=14% Similarity=0.374 Sum_probs=43.0
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHhC----hHHHHHhhcCccchhhHHHhHHhhhcCCCCChHHHHHHHHHHh
Q 043020 488 VKGIIIEKDLVQIVDPSEIEKMVDKVLSEN----PKQLEQYRGGKTKLQGFFAGQVMKISKGKANPGLLNKILLEKL 560 (564)
Q Consensus 488 ~~~IIee~~l~qisD~~eL~~lV~eVi~~n----p~~Ve~yk~Gk~k~~gflmGqVMk~tkGkAdPk~V~~il~e~L 560 (564)
..++.+..|.. ++ .+.+.+.+..++... |-...++.+|+.--+.++.|.+.+..+-.-=|--+++.|-+.+
T Consensus 47 ~~~va~a~G~~-l~-~~~~~~~~~~~~~~~~~~~~SM~~D~~~gr~tEid~i~G~vv~~a~~~gv~~P~~~~i~~lv 121 (125)
T PF08546_consen 47 VIAVARALGIP-LD-PDDLEEAIERLIRSTPDNRSSMLQDIEAGRPTEIDYINGYVVRLAKKHGVPTPVNETIYALV 121 (125)
T ss_dssp HHHHHHHTTSS----HHHHHHHHHHHHHCTTTT--HHHHHHHTTB--SHHHTHHHHHHHHHHTT---HHHHHHHHHH
T ss_pred HHHHHHHhhcc-Cc-HHHHHHHHHHHHHhcCCccccHHHHHHHcccccHHHHHHHHHHHHHHHCCCCcHHHHHHHHH
Confidence 34566677755 44 455777777777754 4578899999999999999999998643223333444444433
No 50
>COG1298 FlhA Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.12 E-value=3.8e+02 Score=31.72 Aligned_cols=87 Identities=21% Similarity=0.231 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCccc-ccCCHHHHHHHHHHHHcCccchHHHHHHHHHHHHcCCCHHHHHHhcCCCCCCCHHH
Q 043020 427 LAANWIMGDIAAYMKNEKLTINE-IKLSAAELAELIASIKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSE 505 (564)
Q Consensus 427 ~vaNWi~~ell~~L~~~~~~i~~-~~ispe~LaeLI~li~~g~IS~k~AK~il~~ll~~~~~~~~IIee~~l~qisD~~e 505 (564)
.-|-||..+........|-+.-+ ..+=..|+.++|+.-...-++.+-.|++++.+- .+...++|+.-+..++ ...
T Consensus 460 l~a~WI~~~~ke~A~~~GYtVvd~~sVi~THl~evir~~a~eLl~rqevq~Lld~l~---~~~p~lvEei~p~~is-~s~ 535 (696)
T COG1298 460 LPAYWIEEDQKEEAQILGYTVVDPSSVIATHLSEVIRNHAHELLGRQEVQQLLDRLA---EEYPKLVEEIVPKKIS-LST 535 (696)
T ss_pred CceeecCchhhhHHHhcCCeeecchHHHHHhHHHHHHHhHHHHhHHHHHHHHHHHHH---HHhHHHHHHhccCccC-HHH
Confidence 57789999888888888866544 345567999999988888888888888887764 2345677777777777 677
Q ss_pred HHHHHHHHHHhC
Q 043020 506 IEKMVDKVLSEN 517 (564)
Q Consensus 506 L~~lV~eVi~~n 517 (564)
|.++.+..+.|.
T Consensus 536 iqkVLq~LL~E~ 547 (696)
T COG1298 536 LQKVLQNLLKER 547 (696)
T ss_pred HHHHHHHHHhcC
Confidence 777777777654
No 51
>PF11212 DUF2999: Protein of unknown function (DUF2999); InterPro: IPR021376 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=22.81 E-value=3e+02 Score=23.41 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=15.2
Q ss_pred hhHHHhHHhhhcCCCCChHHHHHHHHH
Q 043020 532 QGFFAGQVMKISKGKANPGLLNKILLE 558 (564)
Q Consensus 532 ~gflmGqVMk~tkGkAdPk~V~~il~e 558 (564)
+..+||+||. ||.++++.+.+
T Consensus 46 LQ~lm~~VMq------nP~LikeAv~E 66 (82)
T PF11212_consen 46 LQQLMAQVMQ------NPALIKEAVEE 66 (82)
T ss_pred HHHHHHHHhc------ChHHHHHHHHH
Confidence 4567888875 57888777765
No 52
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=22.81 E-value=72 Score=40.24 Aligned_cols=66 Identities=26% Similarity=0.325 Sum_probs=48.7
Q ss_pred CCccCceecC-CCCCCccCCHHHHHHHHHHHHHcCCccCCCc---cccccccCCCCCCCCceeccCCcceeec
Q 043020 104 NTSVCPICMG-LPGALPVVNSKVVEFAVKLGLALNCKLSFNS---KFDRKQYFYPDLPKGYQISQFDIPIATG 172 (564)
Q Consensus 104 Nt~vc~v~lg-~PGtLP~lN~~av~~Ai~~~lALnc~I~~~s---~FdRK~YfYpDlPkGYQITQ~~~PI~~~ 172 (564)
-.+-|.|... +|-+---.|-+.-.-.++.-+||+|+|...- .=|-|. --|||+||.|--+.|--.|
T Consensus 919 rqhpclvefsklpe~eknynlqms~etlktllalgchi~~~~~~aed~~kk---~klpkny~ls~gykpapld 988 (5019)
T KOG2243|consen 919 RQHPCLVEFSKLPEQEKNYNLQMSLETLKTLLALGCHIAHSDEAAEDDLKK---MKLPKNYMLSNGYKPAPLD 988 (5019)
T ss_pred ccCceeeecccCchhhhccchhhhHHHHHHHHHhcccccccChhhhhHHHh---ccCCcceeccCCCCCCCCc
Confidence 4567888887 7777667788877788999999999985432 222222 3599999999988885544
No 53
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=22.37 E-value=7e+02 Score=23.98 Aligned_cols=52 Identities=23% Similarity=0.380 Sum_probs=32.1
Q ss_pred ceeecCCCeeEe-ccCCCCCCCCCcCcCCCCCceecChHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHhCh
Q 043020 335 RLWEEGSQKTVT-MRKKEGLADYRYFPEPDLPEVILNKEYVDSIQSSLPELPEMKRRRYEEMGLSMQDVLFLANDI 409 (564)
Q Consensus 335 R~wd~~~~~T~~-mR~Ke~~~DYRy~PEpdLpp~~l~~e~i~~i~~~lPElP~~~~~Rl~~ygLs~~dA~~L~~d~ 409 (564)
|.|+.. |--.+ .| +...||||.+-|+ ..++ ....|.+.|+|..++..+++..
T Consensus 19 RyYe~~-GLl~p~~r---~~~gyR~Y~~~dl----------~rL~---------~I~~lr~~G~sL~eI~~ll~~~ 71 (172)
T cd04790 19 LYYERI-GLLSPSAR---SESNYRLYGERDL----------ERLE---------QICAYRSAGVSLEDIRSLLQQP 71 (172)
T ss_pred HHHHHC-CCCCCCcc---CCCCCccCCHHHH----------HHHH---------HHHHHHHcCCCHHHHHHHHhcC
Confidence 556654 33222 33 3568999987555 2321 2344678999999988887643
No 54
>TIGR01398 FlhA flagellar biosynthesis protein FlhA. This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model.
Probab=22.26 E-value=3.5e+02 Score=32.08 Aligned_cols=87 Identities=18% Similarity=0.195 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCcccc-cCCHHHHHHHHHHHHcCccchHHHHHHHHHHHHcCCCHHHHHHhcCCCCCCCHHH
Q 043020 427 LAANWIMGDIAAYMKNEKLTINEI-KLSAAELAELIASIKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSE 505 (564)
Q Consensus 427 ~vaNWi~~ell~~L~~~~~~i~~~-~ispe~LaeLI~li~~g~IS~k~AK~il~~ll~~~~~~~~IIee~~l~qisD~~e 505 (564)
..|-|+-.+-...+...|.++-+. .+-..||.++++.-...-++..-.|.+++.+- ++..++++|.-+.+++ ...
T Consensus 445 l~a~WI~~~~~~~a~~~Gytvvd~~~vi~tHL~evi~~~a~ellgrqevq~Lld~l~---~~~p~lveel~p~~~~-l~~ 520 (678)
T TIGR01398 445 LPAYWISEKNKEEAERLGYTVVDPATVLATHLSEVIKNNAAELLTRQEVQNLLDRLK---EEYPKLVEELIPDKVP-LGT 520 (678)
T ss_pred CceEEeChhHHHHHHHCCCEEEcHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH---HHChHHHHHhccCCCC-HHH
Confidence 367799888877788787765442 24467999999888888888888898888873 3445788887777777 777
Q ss_pred HHHHHHHHHHhC
Q 043020 506 IEKMVDKVLSEN 517 (564)
Q Consensus 506 L~~lV~eVi~~n 517 (564)
+.++++..+.|.
T Consensus 521 l~~VLq~LL~E~ 532 (678)
T TIGR01398 521 IQKVLQLLLRER 532 (678)
T ss_pred HHHHHHHHHhcC
Confidence 888877777764
No 55
>COG2003 RadC DNA repair proteins [DNA replication, recombination, and repair]
Probab=22.22 E-value=6.3e+02 Score=25.87 Aligned_cols=119 Identities=22% Similarity=0.309 Sum_probs=64.0
Q ss_pred HHHHHHHcCCCHHHHHHHHhChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--HHHHhcCCCcccc----cCCHHHHHHHH
Q 043020 388 KRRRYEEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMGDIA--AYMKNEKLTINEI----KLSAAELAELI 461 (564)
Q Consensus 388 ~~~Rl~~ygLs~~dA~~L~~d~~la~yFE~~v~~~~~pk~vaNWi~~ell--~~L~~~~~~i~~~----~ispe~LaeLI 461 (564)
-|+||..+| +..| +|.+|...|-.+-..+.+....|+.+++.+- +.|.+. ++.+. .+-+....++-
T Consensus 12 PRErll~~G-----~~~L-sd~ELLailLrtG~~~~~~~~la~~lL~~fg~L~~l~~a--~~~el~~v~GiG~aka~~l~ 83 (224)
T COG2003 12 PRERLLKLG-----AEAL-SDAELLAILLRTGTKGESVLDLAKELLQEFGSLAELLKA--SVEELSSVKGIGLAKAIQIK 83 (224)
T ss_pred hHHHHHHhC-----hhhc-chHHHHHHHHhcCCCCCCHHHHHHHHHHHcccHHHHHhC--CHHHHhhCCCccHHHHHHHH
Confidence 367787777 4444 3456666666665567888999998888773 233322 22221 13344444444
Q ss_pred HHHHcCccchHHHHHHHHHHHHcCCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhChHHHH--HhhcCccchhh
Q 043020 462 ASIKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLE--QYRGGKTKLQG 533 (564)
Q Consensus 462 ~li~~g~IS~k~AK~il~~ll~~~~~~~~IIee~~l~qisD~~eL~~lV~eVi~~np~~Ve--~yk~Gk~k~~g 533 (564)
.+++ .+|.++..-... -..++++++....+..-+.....++- -|-..+.+++.
T Consensus 84 a~~E-------l~~R~~~~~~~~------------~~~i~sp~~~~~~l~~~l~~~~~E~f~vL~Ld~qnrlI~ 138 (224)
T COG2003 84 AAIE-------LGKRILAERLRE------------GVVITSPEAVAEYLRAELGGEEREHFVVLYLDSQNRLIA 138 (224)
T ss_pred HHHH-------HHHHHHHHHhcc------------CCccCCHHHHHHHHHHHhhhhHHHHHHHHHhcCcCceec
Confidence 4442 334444332211 12355677777777766665544332 35566666554
No 56
>PF14367 DUF4411: Domain of unknown function (DUF4411)
Probab=21.98 E-value=5.2e+02 Score=24.53 Aligned_cols=93 Identities=18% Similarity=0.121 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHcCccchHHHHHHHHHHHHcCCCHHHHHHhcCC---CCCCCHHHHHHHHHHHHHhChHHHHHhhcCc
Q 043020 452 LSAAELAELIASIKGATISGKIGKEILFELMAKGGTVKGIIIEKDL---VQIVDPSEIEKMVDKVLSENPKQLEQYRGGK 528 (564)
Q Consensus 452 ispe~LaeLI~li~~g~IS~k~AK~il~~ll~~~~~~~~IIee~~l---~qisD~~eL~~lV~eVi~~np~~Ve~yk~Gk 528 (564)
+-|..-..|..++.+|.|- +-++|.+|+..++.+..+.++.+.. ...+++.++.+...+|+.-+-..-.+|+.+.
T Consensus 20 ~~p~fW~~L~~~~~~g~i~--~~~~V~~El~~~~d~l~~W~k~~~~~~~~~~~~d~~~~~~~~~v~~~~~~~~~~~~~~a 97 (162)
T PF14367_consen 20 IFPSFWDWLEQLIESGRII--SPDEVYDELERGDDELAKWAKNNEPKFFFFSTDDEAIQAEYAEVLNWVIINSQQYKKGA 97 (162)
T ss_pred HHHHHHHHHHHHHhCCeEe--ehHHHHHHHhhCChhHHHHHHhCCccccccCCChHHHHHHHHHHHHHHhhcchhhchhH
Confidence 4577777888888888774 3467888888777778888888876 3333333454555555543211111222111
Q ss_pred cchhhHHHhHHhhhcCCCCChHHHHHHHH
Q 043020 529 TKLQGFFAGQVMKISKGKANPGLLNKILL 557 (564)
Q Consensus 529 ~k~~gflmGqVMk~tkGkAdPk~V~~il~ 557 (564)
...|+ +.|||-+|.-.+.
T Consensus 98 --~~~f~---------~~ADp~LIA~A~~ 115 (162)
T PF14367_consen 98 --KDEFL---------SVADPWLIAYAKA 115 (162)
T ss_pred --Hhhhc---------ccCCHHHHHHHHh
Confidence 12222 6789988877654
No 57
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=21.95 E-value=2e+02 Score=22.62 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=28.4
Q ss_pred CceeEEeeCCCCCCHHHHHHHHHHHHHHH-HHhCcccC
Q 043020 233 VPLLEIVSEPDMRTGLEAAEYAAELQRLV-RYLGVSNG 269 (564)
Q Consensus 233 vPLiEIVTePd~~s~~EA~~~~~~L~~il-r~lgvs~g 269 (564)
||++.|---+- +|.++-+++++.|.+.+ +.+|+...
T Consensus 1 MP~v~i~l~~g-rt~eqk~~l~~~it~~l~~~lg~p~~ 37 (64)
T PRK01964 1 MPIVQIQLLEG-RPEEKIKNLIREVTEAISATLDVPKE 37 (64)
T ss_pred CCEEEEEEeCC-CCHHHHHHHHHHHHHHHHHHhCcChh
Confidence 79999985553 89999999999997654 56887753
No 58
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=21.73 E-value=1.4e+02 Score=22.02 Aligned_cols=25 Identities=12% Similarity=0.424 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHhChHHHHHhhc
Q 043020 502 DPSEIEKMVDKVLSENPKQLEQYRG 526 (564)
Q Consensus 502 D~~eL~~lV~eVi~~np~~Ve~yk~ 526 (564)
|.+.|..++.++++.||+.-..+..
T Consensus 11 d~~qL~~lL~~l~~~HPei~~~i~~ 35 (38)
T PF14483_consen 11 DKDQLQSLLQSLCERHPEIQQEIRS 35 (38)
T ss_dssp -HHHHHHHHHHHHHHSTHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhChhHHHHHHh
Confidence 5899999999999999998777653
No 59
>PF12668 DUF3791: Protein of unknown function (DUF3791); InterPro: IPR024269 This entry represents proteins of unknown function.
Probab=21.62 E-value=1.9e+02 Score=23.16 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=36.0
Q ss_pred HHHHH-HcCCCHHHHHHHHhChhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 043020 389 RRRYE-EMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMGDIAAYMKNEK 444 (564)
Q Consensus 389 ~~Rl~-~ygLs~~dA~~L~~d~~la~yFE~~v~~~~~pk~vaNWi~~ell~~L~~~~ 444 (564)
.+.|. .+|+|..+|..+.....+.+|....-.. --.+.-.|++.||...+++.|
T Consensus 8 Ie~~A~~~~~s~~ea~~~~~~~~~~~~i~~~Yd~--lHt~s~~yivedi~~~l~~~g 62 (62)
T PF12668_consen 8 IEEFAKKLNISGEEAYNYFKRSGVIDYIIDCYDV--LHTQSDEYIVEDIIEYLKNRG 62 (62)
T ss_pred HHHHHHHHCcCHHHHHHHHHHcCcHHHHHHcchH--HHHCcHHHHHHHHHHHHHhcC
Confidence 45564 5899999999888777666654333211 123455788899988888764
No 60
>PRK13711 conjugal transfer protein TrbJ; Provisional
Probab=21.51 E-value=41 Score=29.34 Aligned_cols=52 Identities=31% Similarity=0.563 Sum_probs=37.2
Q ss_pred cccCCCCCCCCCCCCccCceecCCCCCCccCCHHHHHHHHHHHHHcCCccCCCccccccccCCCCCCCCc
Q 043020 91 AFCTCPYNYGAQPNTSVCPICMGLPGALPVVNSKVVEFAVKLGLALNCKLSFNSKFDRKQYFYPDLPKGY 160 (564)
Q Consensus 91 lFc~c~~~~~~~PNt~vc~v~lg~PGtLP~lN~~av~~Ai~~~lALnc~I~~~s~FdRK~YfYpDlPkGY 160 (564)
-||+|.-. ..--|.++-..-.|.-| .|.+--+...+.|-|.-.|||.-|---
T Consensus 11 pfcrcte~-kkvrnkqvvlliagisg-----------------iatgiivslnipfi~qglfypaspvei 62 (113)
T PRK13711 11 PFCRCTER-KKVRNKQVVLLIAGISG-----------------IATGIIVSLNIPFIRQGLFYPASPVEI 62 (113)
T ss_pred ceeEccCC-ceeccceEEEEEecccc-----------------ceeeEEEEecchHhhcccccCCCceee
Confidence 48999543 24457777776666655 455556677789999999999998543
No 61
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.10 E-value=1.9e+02 Score=25.95 Aligned_cols=51 Identities=25% Similarity=0.369 Sum_probs=31.9
Q ss_pred ceeecCCCeeEeccCCCCCCCCCcCcCCCCCceecChHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 043020 335 RLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILNKEYVDSIQSSLPELPEMKRRRYEEMGLSMQDVLFLAN 407 (564)
Q Consensus 335 R~wd~~~~~T~~mR~Ke~~~DYRy~PEpdLpp~~l~~e~i~~i~~~lPElP~~~~~Rl~~ygLs~~dA~~L~~ 407 (564)
|.|+..+--.-+-|+ ...||||.+-|+ ..+ .....|.+.|+|..++..+++
T Consensus 18 RyYe~~GLl~p~~r~---~~gyR~Y~~~~i----------~~l---------~~I~~lr~~G~sl~eI~~~l~ 68 (123)
T cd04770 18 RYYERIGLLPPPQRS---ENGYRLYGEADL----------ARL---------RFIRRAQALGFSLAEIRELLS 68 (123)
T ss_pred HHHHHCCCCCCCCCC---CCCCccCCHHHH----------HHH---------HHHHHHHHCCCCHHHHHHHHH
Confidence 566655433334453 458999987655 222 233456789999999887764
No 62
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=20.78 E-value=7.4e+02 Score=24.42 Aligned_cols=48 Identities=10% Similarity=0.105 Sum_probs=33.8
Q ss_pred cCCCHHHHHHHHhChhhHHHHHHHHHhcC--------CHHHHHHHHHHHHHHHHHh
Q 043020 395 MGLSMQDVLFLANDINVARFFDATIEKGA--------DVKLAANWIMGDIAAYMKN 442 (564)
Q Consensus 395 ygLs~~dA~~L~~d~~la~yFE~~v~~~~--------~pk~vaNWi~~ell~~L~~ 442 (564)
-|+.+.-|..+++.-...++.+++..... =.++.|.-|+-||...+..
T Consensus 79 ~GIGpK~AL~iLs~~~~~el~~aI~~~D~~~L~~vpGIGkKtAerIilELkdK~~~ 134 (188)
T PRK14606 79 SRLGPKTALKIISNEDAETLVTMIASQDVEGLSKLPGISKKTAERIVMELKDEFES 134 (188)
T ss_pred CCccHHHHHHHHcCCCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHHhhcc
Confidence 69999999999987777777777764311 1345667777888877753
No 63
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=20.75 E-value=2.6e+02 Score=19.43 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=23.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHhChhhHHHHHHHHHhcCCHHHHHHHHH
Q 043020 387 MKRRRYEEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIM 433 (564)
Q Consensus 387 ~~~~Rl~~ygLs~~dA~~L~~d~~la~yFE~~v~~~~~pk~vaNWi~ 433 (564)
+..+++.++|++..+|..-+. ..+.|...+++||+
T Consensus 3 ~~v~~L~~mGf~~~~a~~aL~------------~~~~d~~~A~~~L~ 37 (37)
T smart00165 3 EKIDQLLEMGFSREEALKALR------------AANGNVERAAEYLL 37 (37)
T ss_pred HHHHHHHHcCCCHHHHHHHHH------------HhCCCHHHHHHHHC
Confidence 456677889999988764321 22356777888873
No 64
>COG5418 Predicted secreted protein [Function unknown]
Probab=20.52 E-value=47 Score=31.76 Aligned_cols=16 Identities=38% Similarity=0.698 Sum_probs=13.9
Q ss_pred CCCCCCCceeccCCcc
Q 043020 153 YPDLPKGYQISQFDIP 168 (564)
Q Consensus 153 YpDlPkGYQITQ~~~P 168 (564)
-|.+||||||-|+-.|
T Consensus 38 l~~npk~~~IiqlPCP 53 (164)
T COG5418 38 LPSNPKDWNIIQLPCP 53 (164)
T ss_pred hccCCCCCceEeccCc
Confidence 5889999999999666
No 65
>PF07547 RSD-2: RSD-2 N-terminal domain; InterPro: IPR011508 This domain is found in three copies at the N terminus of the Caenorhabditis elegans RSD-2 protein. RSD-2 (RNAi spreading defective) is involved in systemic RNAi []. Mutations in the rsd-2 gene do not affect somatic genes but only germline expressed genes [].
Probab=20.03 E-value=1.1e+02 Score=26.60 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=31.3
Q ss_pred eeecCCCCceeEEeeCCCCCCHHHHHHHHHHHHH
Q 043020 226 VDLNRAGVPLLEIVSEPDMRTGLEAAEYAAELQR 259 (564)
Q Consensus 226 vD~NRaGvPLiEIVTePd~~s~~EA~~~~~~L~~ 259 (564)
+||-.-|.||..+|.-.-....+++.+|+++|..
T Consensus 46 ld~~~~~~~lFKvv~~~~~~~~~~~~~f~~~m~~ 79 (84)
T PF07547_consen 46 LDYEDNGNPLFKVVSILKKLDNEDNEEFMQKMYE 79 (84)
T ss_pred eccccCCCCeEEEEeeccccccccHHHHHHHHHH
Confidence 6899999999999999999999999999998865
Done!