Query 043020
Match_columns 564
No_of_seqs 198 out of 1314
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 21:09:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043020.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043020hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ip4_B Aspartyl/glutamyl-tRNA( 100.0 1E-177 3E-182 1424.7 51.2 473 71-562 1-474 (483)
2 3h0l_B Aspartyl/glutamyl-tRNA( 100.0 1E-177 3E-182 1423.3 46.3 475 70-562 2-477 (478)
3 3al0_B Aspartyl/glutamyl-tRNA( 100.0 1E-175 5E-180 1407.5 41.8 474 71-561 1-480 (482)
4 3kfu_F Aspartyl/glutamyl-tRNA( 100.0 3E-159 1E-163 1265.0 32.5 421 72-517 1-423 (466)
5 2d6f_C Glutamyl-tRNA(Gln) amid 100.0 4E-143 1E-147 1180.7 26.4 447 71-562 4-617 (619)
6 1zq1_C Glutamyl-tRNA(Gln) amid 100.0 2E-140 5E-145 1162.6 29.7 443 73-562 13-629 (633)
7 2hz7_A Glutaminyl-tRNA synthet 100.0 8.7E-39 3E-43 363.3 0.0 175 381-561 677-851 (851)
8 1ng6_A Hypothetical protein YQ 99.8 3E-19 1E-23 166.2 11.2 113 435-561 28-148 (148)
9 3tl4_X Glutaminyl-tRNA synthet 97.8 0.0024 8.1E-08 61.3 20.3 161 386-560 5-174 (187)
10 1veg_A NEDD8 ultimate buster-1 58.9 31 0.001 28.6 7.2 59 353-434 8-66 (83)
11 1wiv_A UBP14, ubiquitin-specif 56.4 29 0.001 27.8 6.6 42 381-434 25-66 (73)
12 2ekk_A UBA domain from E3 ubiq 51.9 18 0.0006 26.3 4.2 40 382-434 6-45 (47)
13 2g3q_A Protein YBL047C; endocy 51.0 25 0.00086 24.9 4.8 38 385-434 4-41 (43)
14 3a5i_A Flagellar biosynthesis 47.3 64 0.0022 34.0 9.2 92 451-558 228-328 (389)
15 3u5c_N S27A, YS15, 40S ribosom 38.5 1.5E+02 0.0053 27.1 9.1 64 451-515 27-97 (151)
16 3abf_A 4-oxalocrotonate tautom 38.2 45 0.0015 24.7 4.8 35 233-268 1-36 (64)
17 3mix_A Flagellar biosynthesis 35.8 1.3E+02 0.0043 31.6 9.3 92 452-558 218-322 (382)
18 2dai_A Ubadc1, ubiquitin assoc 35.4 64 0.0022 26.5 5.6 39 384-434 28-66 (83)
19 1wji_A Tudor domain containing 35.1 60 0.0021 25.2 5.1 38 385-434 9-46 (63)
20 2dag_A Ubiquitin carboxyl-term 34.7 69 0.0024 25.7 5.5 41 382-434 6-47 (74)
21 2dak_A Ubiquitin carboxyl-term 34.7 67 0.0023 24.7 5.3 41 383-435 7-47 (63)
22 2xzm_O RPS13E; ribosome, trans 31.4 1.9E+02 0.0066 26.5 8.5 64 451-515 29-99 (153)
23 2x49_A INVA, invasion protein 29.4 2.5E+02 0.0087 28.7 10.1 94 451-559 171-276 (333)
24 1vek_A UBP14, ubiquitin-specif 27.5 1.1E+02 0.0038 25.1 5.7 42 381-434 25-67 (84)
25 1ify_A HHR23A, UV excision rep 27.3 1.1E+02 0.0039 22.2 5.2 37 386-434 9-45 (49)
26 2jvf_A De novo protein M7; tet 26.1 80 0.0027 25.6 4.4 39 228-268 42-80 (96)
27 2ooa_A E3 ubiquitin-protein li 25.7 1.4E+02 0.0049 22.6 5.4 40 382-433 8-47 (52)
28 1whc_A RSGI RUH-027, UBA/UBX 3 25.2 69 0.0023 24.9 3.8 38 385-434 9-47 (64)
29 3mb2_A 4-oxalocrotonate tautom 23.3 1.1E+02 0.0038 23.5 4.8 44 233-286 1-45 (72)
30 2d9s_A CBL E3 ubiquitin protei 23.2 1.8E+02 0.006 22.2 5.5 40 382-433 6-45 (53)
31 1v54_E Cytochrome C oxidase po 22.8 1.1E+02 0.0036 26.7 4.8 42 407-448 59-101 (109)
32 2x4k_A 4-oxalocrotonate tautom 21.6 1.6E+02 0.0055 21.1 5.2 36 232-268 2-38 (63)
33 2y69_E Cytochrome C oxidase su 21.2 1.1E+02 0.0038 28.0 4.8 37 412-448 108-144 (152)
34 2x49_A INVA, invasion protein 20.9 2.2E+02 0.0074 29.2 7.7 120 428-561 103-223 (333)
No 1
>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B
Probab=100.00 E-value=9.7e-178 Score=1424.71 Aligned_cols=473 Identities=47% Similarity=0.828 Sum_probs=461.9
Q ss_pred cccceeeeeeeeeeccCCcccccCCCCCCCCCCCCccCceecCCCCCCccCCHHHHHHHHHHHHHcCCccCCCccccccc
Q 043020 71 KEYEAIIGIETHVQLSTLTKAFCTCPYNYGAQPNTSVCPICMGLPGALPVVNSKVVEFAVKLGLALNCKLSFNSKFDRKQ 150 (564)
Q Consensus 71 ~~~e~vIGLEiHvQL~T~tKlFc~c~~~~~~~PNt~vc~v~lg~PGtLP~lN~~av~~Ai~~~lALnc~I~~~s~FdRK~ 150 (564)
|+|++||||||||||+|+|||||+|++.||++|||+|||||+|+||+|||||++||++||++|+||||+|++.|+|||||
T Consensus 1 m~~e~vIGLEvH~qL~T~tKlF~~~~~~fg~~PNt~v~pv~lg~PG~LPvlN~~av~~Ai~~~lALnc~I~~~s~FdRK~ 80 (483)
T 3ip4_B 1 MHFETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNKRAVDWAMRAAMALNMEIATESKFDRKN 80 (483)
T ss_dssp CCEEEEEEEEEEEECCCSBCSSSSSBSSCCSSTTCSCCTTTTTCTTCCCCCBHHHHHHHHHHHHHTTCEECSEECCEEEE
T ss_pred CCcceEEEEEEEEEecCCCCCcCCCCCcCCCCCccCcCchhccCCCCccccCHHHHHHHHHHHHHcCCcccccceeeecc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCceeccCCcceeeccEEEEecccccCCCeeeEEEeEeeeccccccccccCCCCCccccccccccceeeeecC
Q 043020 151 YFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFGITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNR 230 (564)
Q Consensus 151 YfYpDlPkGYQITQ~~~PI~~~G~i~~~~~~~~~~~~k~i~I~rihLEEDagK~~h~~~~~~~~~~~~~~~~~~lvD~NR 230 (564)
|||||||||||||||+.|||.||+|++++ +|+.|+|+|+||||||||||++|+++ + ++|||||
T Consensus 81 YfYpDlPkgYQITQ~~~Pia~~G~l~i~~----~~~~k~I~I~rihlEEDagK~~h~~~--~-----------slvD~NR 143 (483)
T 3ip4_B 81 YFYPDNPKAYQISQFDQPIGENGYIDIEV----DGETKRIGITRLHMEEDAGKSTHKGE--Y-----------SLVDLNR 143 (483)
T ss_dssp CCBTTBTTSEEEECSSSCSEEEEEEEECS----SSSCEEEEEEEEEEEECCCEEEEETT--E-----------EEEECTT
T ss_pred ccCCCCCcCccccccccCeecCCEEEEEe----cCceEEEeEEEEeecchhhhhccCCC--c-----------eEEecCC
Confidence 99999999999999999999999999975 35569999999999999999999743 3 4599999
Q ss_pred CCCceeEEeeCCCCCCHHHHHHHHHHHHHHHHHhCcccCCcCCCcccccccccccCCCCCCCccEEEEcCCCChHHHHHH
Q 043020 231 AGVPLLEIVSEPDMRTGLEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINRA 310 (564)
Q Consensus 231 aGvPLiEIVTePd~~s~~EA~~~~~~L~~ilr~lgvs~g~meeGslR~DvNVSv~~~g~~~~g~rvEIKNlnS~~~i~~A 310 (564)
||||||||||+|||+||+||++|+++||++|||+|||||+||+|+|||||||||++.|+.++||||||||||||++|++|
T Consensus 144 aGvPLiEIVTePd~~s~eeA~a~~~~L~~ilr~lgvsd~~meeGslR~DvNVSvr~~g~~~~GtRvEiKNlnS~~~v~~A 223 (483)
T 3ip4_B 144 QGTPLIEIVSEPDIRSPKEAYAYLEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKG 223 (483)
T ss_dssp TTCEEEEEEECSCBCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTSEEEEEEEEEEETTSCCCCCEEEEECCCSHHHHHHH
T ss_pred CCCceEEEecCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcccCceEeeeeEeecCCCCCCCcceEEEecccCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCccccccceeecCCCeeEeccCCCCCCCCCcCcCCCCCceecChHHHHHHHhcCCCCHHHHHH
Q 043020 311 IDFEIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILNKEYVDSIQSSLPELPEMKRR 390 (564)
Q Consensus 311 I~~Ei~RQ~~ll~~g~~~~i~qETR~wd~~~~~T~~mR~Ke~~~DYRy~PEpdLpp~~l~~e~i~~i~~~lPElP~~~~~ 390 (564)
|+||+.||+++|+.|+ .|.||||+||+.+|+|++||+||++.|||||||||||||.|+++|+++++++|||||+++++
T Consensus 224 I~yEi~RQ~~~le~Gg--~v~qETR~~d~~~g~T~~mR~KE~a~DYRyfPePDLpPv~i~~e~ie~i~~~lPElP~~k~~ 301 (483)
T 3ip4_B 224 LEYEEKRQEEELLNGG--EIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDAWKERVRQTIPELPDERKA 301 (483)
T ss_dssp HHHHHHHHHHHHHHTC--CCCEEEEEECTTTSCEEEEEEECSCCCCCCEECTTSCCEECCHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--cEeccceeecCCCCEEEecccccccccCCCCCCCCCCceecCHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999999996 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH-HcCCCHHHHHHHHhChhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCcccccCCHHHHHHHHHHHHcCcc
Q 043020 391 RYE-EMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELIASIKGATI 469 (564)
Q Consensus 391 Rl~-~ygLs~~dA~~L~~d~~la~yFE~~v~~~~~pk~vaNWi~~ell~~L~~~~~~i~~~~ispe~LaeLI~li~~g~I 469 (564)
||. +||||.+||.+|++++.+++|||++++.+.+|+.+||||++|++++||+.++++++++++|++|++|+++|++|+|
T Consensus 302 R~~~eygLs~~dA~~L~~~~~~a~~Fe~~v~~~~~~k~~anw~~~el~~~ln~~~~~i~~~~i~p~~la~li~li~~g~I 381 (483)
T 3ip4_B 302 KYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADVKLTSNWLMGGVNEYLNKNQVELLDTKLTPENLAGMIKLIEDGTM 381 (483)
T ss_dssp HHHHTSCCCHHHHHHHTSSHHHHHHHHHHHTTTCCHHHHHHHHHTHHHHHHHHTTCCGGGSSCCHHHHHHHHHHHHHTSS
T ss_pred HHHhhcCCCHHHHHHHHcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhCCCCHHhcCCCHHHHHHHHHHHHcCCc
Confidence 996 6999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHcCCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhChHHHHHhhcCccchhhHHHhHHhhhcCCCCCh
Q 043020 470 SGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKISKGKANP 549 (564)
Q Consensus 470 S~k~AK~il~~ll~~~~~~~~IIee~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk~Gk~k~~gflmGqVMk~tkGkAdP 549 (564)
|+++||++|..|++++++|.+||+++||.|+||+++|+++|++||++||++|++|++||+|++|||||||||+|+|||||
T Consensus 382 s~~~ak~vl~~~~~~~~~p~~iVee~GL~qisD~~eLe~iV~eVIa~np~~v~~~k~GK~ka~gfLVGQVMK~tkGKAdP 461 (483)
T 3ip4_B 382 SSKIAKKVFPELAAKGGNAKQIMEDNGLVQISDEATLLKFVNEALDNNEQSVEDYKNGKGKAMGFLVGQIMKASKGQANP 461 (483)
T ss_dssp CHHHHHHHHHHHHHHCCCHHHHHHTTTCCCBCCHHHHHHHHHHHHHHCHHHHHHHHTTCSCHHHHHHHHHHHHTTSCBCH
T ss_pred cHHHHHHHHHHHHhcCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHCHHHHHHHHccCHHHHHHHHHHHHHHhCCCCCH
Confidence 99999999999999899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 043020 550 GLLNKILLEKLNA 562 (564)
Q Consensus 550 k~V~~il~e~L~~ 562 (564)
++|+++|+++|+.
T Consensus 462 ~~VnelL~e~L~~ 474 (483)
T 3ip4_B 462 QLVNQLLKQELDK 474 (483)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999984
No 2
>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B*
Probab=100.00 E-value=9.6e-178 Score=1423.27 Aligned_cols=475 Identities=47% Similarity=0.855 Sum_probs=398.7
Q ss_pred hcccceeeeeeeeeeccCCcccccCCCCCCCCCCCCccCceecCCCCCCccCCHHHHHHHHHHHHHcCCccCCCcccccc
Q 043020 70 SKEYEAIIGIETHVQLSTLTKAFCTCPYNYGAQPNTSVCPICMGLPGALPVVNSKVVEFAVKLGLALNCKLSFNSKFDRK 149 (564)
Q Consensus 70 ~~~~e~vIGLEiHvQL~T~tKlFc~c~~~~~~~PNt~vc~v~lg~PGtLP~lN~~av~~Ai~~~lALnc~I~~~s~FdRK 149 (564)
.|+|++||||||||||+|+|||||+|++.||++|||+|||||+|+||+|||||++||++|+++|+||||+|++.|+||||
T Consensus 2 ~~~~e~viGLEvH~qL~T~tKlF~~~~~~fg~~PNt~v~pv~lg~PG~LPvlN~~av~~Ai~~~lALnc~I~~~s~FdRK 81 (478)
T 3h0l_B 2 NEKYEAVIGLEIHVQMDTKTKMFCGCKVEFGAEPNTNVCPVCLGMPGALPIVNKRAVEYAIRASLALNCEVHEESVFARK 81 (478)
T ss_dssp -CCEEEEEEEEEEEECCCSBCSSSSCBCCTTCCTTCSCCTTTTTCTTCCCCCBHHHHHHHHHHHHHTTCEECSEECEEEE
T ss_pred CCCceeEEEEEEEEEecCCCcCcCCCCcccCCCCccccCccccCCCCCccccCHHHHHHHHHHHHHcCCcccccceeeec
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCceeccCCcceeeccEEEEecccccCCCeeeEEEeEeeeccccccccccCCCCCccccccccccceeeeec
Q 043020 150 QYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFGITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLN 229 (564)
Q Consensus 150 ~YfYpDlPkGYQITQ~~~PI~~~G~i~~~~~~~~~~~~k~i~I~rihLEEDagK~~h~~~~~~~~~~~~~~~~~~lvD~N 229 (564)
||||||||||||||||+.|||.||+|+++++ +|..|+|+|+||||||||||++|. +++ ++||||
T Consensus 82 ~YfYpDlPkgYQITQ~~~Pia~~G~l~i~~~---~g~~k~I~I~rihlEEDagK~~h~--~~~-----------slvD~N 145 (478)
T 3h0l_B 82 HYFYPDLPKGYQISQYEKPLATNGWVELNLP---NGEKKKVRIRRLHIEEDAGKNIHE--GDK-----------TLVDLN 145 (478)
T ss_dssp ECCCTTCTTSEEEEESSSCSEEEEEEEEECT---TSCEEEEEEEEEEEEECCCEEEEE--TTE-----------EEEECS
T ss_pred cccCCCCCcccchhccccCeecCCEEEEEec---CCceEEEeeEEEEecccccccccC--CCc-----------eEEecC
Confidence 9999999999999999999999999999853 345799999999999999999997 233 359999
Q ss_pred CCCCceeEEeeCCCCCCHHHHHHHHHHHHHHHHHhCcccCCcCCCcccccccccccCCCCCCCccEEEEcCCCChHHHHH
Q 043020 230 RAGVPLLEIVSEPDMRTGLEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINR 309 (564)
Q Consensus 230 RaGvPLiEIVTePd~~s~~EA~~~~~~L~~ilr~lgvs~g~meeGslR~DvNVSv~~~g~~~~g~rvEIKNlnS~~~i~~ 309 (564)
|||||||||||+|||+||+||++|+++||++|||+|||||+||+|+||||||||||+.|+.++||||||||||||++|++
T Consensus 146 RaGvPLiEIVTePd~~s~eeA~a~~~~L~~ilr~lgvsd~~meeGslR~DvNVSvr~~g~~~~GtRvEiKNlnS~~~v~~ 225 (478)
T 3h0l_B 146 RAGTPLMEIVTEPDIRTPEEARLFLEKLRNIMRYAGVSKADMEKGQLRCDINVSIRPKGSKEFGTRVEIKNVNSFRFVQK 225 (478)
T ss_dssp STTCEEEEEEECTTBCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTSEEEEEEEEEEETTCCSCCCCEEEECCCSHHHHHH
T ss_pred CCCCceEEEecCCCCCCHHHHHHHHHHHHHHHHHhCcCccccccCceEeeeeEEeccCCCCCCcceEEEeccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCccccccceeecCCCeeEeccCCCCCCCCCcCcCCCCCceecChHHHHHHHhcCCCCHHHHH
Q 043020 310 AIDFEIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILNKEYVDSIQSSLPELPEMKR 389 (564)
Q Consensus 310 AI~~Ei~RQ~~ll~~g~~~~i~qETR~wd~~~~~T~~mR~Ke~~~DYRy~PEpdLpp~~l~~e~i~~i~~~lPElP~~~~ 389 (564)
||+||+.||+++|+.|+ .|.||||+||+.+|+|++||+||+++|||||||||||||.|+++|+++++++|||||++++
T Consensus 226 AI~yEi~RQ~~~le~Gg--~V~qETR~~d~~~g~T~~mR~KE~a~DYRyfPePDLppv~i~~e~i~~i~~~lPElP~~~~ 303 (478)
T 3h0l_B 226 ALEYEIERQINVVEEGG--EVVQETRTFDPQTGKTYPMRTKEEAEDYRYFPDPDLVPLKVKKEWIEEIKKNMPELPDQRF 303 (478)
T ss_dssp HHHHHHHHHHHHHHTTC--CCCCCEEEEETTTTEEECCSCCCCCCCCCCEECTTSCCEECCHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCC--CeecccccccCCCCeEEeccccCccccCCCCCCCCCCCeecCHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999996 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-HcCCCHHHHHHHHhChhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCcccccCCHHHHHHHHHHHHcCc
Q 043020 390 RRYE-EMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELIASIKGAT 468 (564)
Q Consensus 390 ~Rl~-~ygLs~~dA~~L~~d~~la~yFE~~v~~~~~pk~vaNWi~~ell~~L~~~~~~i~~~~ispe~LaeLI~li~~g~ 468 (564)
+||. +||||.+||.+|++++.+++|||++++.+.+|+.+||||++||+++||+.++++++++++|++|++|+++|++|+
T Consensus 304 ~R~~~~ygLs~~dA~~L~~~~~~a~~fe~~~~~~~~~k~~anw~~~el~~~ln~~~~~i~~~~i~p~~la~li~li~~g~ 383 (478)
T 3h0l_B 304 ERLIKEYGLSEYEAGILVNHKEVGDFFEEAVRHFKEPKGIVNWLINDLLGLLRDKGISIEESPVKPEHLAELVKLIKEKV 383 (478)
T ss_dssp HHHHHHTCCCHHHHHHHHHSHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHHHHTCCGGGCSSCHHHHHHHHHHHHTTS
T ss_pred HHHHhccCCCHHHHHHHHcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCCCHhhcCCCHHHHHHHHHHHHcCC
Confidence 9996 799999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHcCCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhChHHHHHhhcCccchhhHHHhHHhhhcCCCCC
Q 043020 469 ISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKISKGKAN 548 (564)
Q Consensus 469 IS~k~AK~il~~ll~~~~~~~~IIee~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk~Gk~k~~gflmGqVMk~tkGkAd 548 (564)
||+++||++|..|++++++|.+||+++||+|+||+++|+++|++||++||++|++|++||+|++|||||||||+++||||
T Consensus 384 Is~~~ak~vl~~~~~~~~~p~eIVee~gL~qisD~~el~~iV~evI~~np~~v~~~~~Gk~k~~g~lvGqVMK~tkGkAd 463 (478)
T 3h0l_B 384 ISTKIGKEVIKEMVETGKTPSQIVEEKGLKQITDENQIKELVKKIFEKHPKEVERLKQGEEKLIGFFVGQVMRETRGKAN 463 (478)
T ss_dssp SCHHHHHHHHHHHHHHCCCHHHHHHHHCC---------------------------------------------------
T ss_pred ccHHHHHHHHHHHHhcCCCHHHHHHHcCCccCCCHHHHHHHHHHHHHhChHHHHHHHccCHHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhc
Q 043020 549 PGLLNKILLEKLNA 562 (564)
Q Consensus 549 Pk~V~~il~e~L~~ 562 (564)
|++|+++|+++|+.
T Consensus 464 p~~VnelL~e~L~~ 477 (478)
T 3h0l_B 464 PQVVNKVIRELVKE 477 (478)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999963
No 3
>3al0_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=100.00 E-value=1.5e-175 Score=1407.52 Aligned_cols=474 Identities=46% Similarity=0.823 Sum_probs=461.1
Q ss_pred cccceeeeeeeeeeccCCcccccCCCCC-CCCCCCCccCceecCCCCCCccCCHHHHHHHHHHHHHcCCccCCCcccccc
Q 043020 71 KEYEAIIGIETHVQLSTLTKAFCTCPYN-YGAQPNTSVCPICMGLPGALPVVNSKVVEFAVKLGLALNCKLSFNSKFDRK 149 (564)
Q Consensus 71 ~~~e~vIGLEiHvQL~T~tKlFc~c~~~-~~~~PNt~vc~v~lg~PGtLP~lN~~av~~Ai~~~lALnc~I~~~s~FdRK 149 (564)
|+|++|||||||+||+|+|||||+|++. ||++|||+|||||+|+||+||+||++||++||++|+||||+|++.++||||
T Consensus 1 m~~e~vIGLEiH~qL~T~tKlFc~c~t~~fg~~pNt~vcpv~lg~PG~lPvlN~~av~~Ai~~~laLnc~I~~~s~FdRK 80 (482)
T 3al0_B 1 MRYRPVIGLEIHVQLSTKTKAFCSCPADVFELPPNTAICPVCTGQPGALPVPNEEMIRFAVKTALALNCKIHKYSRFDRK 80 (482)
T ss_dssp CCSCCCCEEEEEEECCCSBCSSSSSBSCCTTCCTTSSCCTTTTTCTTCCCCCBHHHHHHHHHHHHHTTCCBCSEECCEEE
T ss_pred CCcceEEEEEEEEEeCCCCCEeCCCCcccccCCCcCccCceecCCCCCccccCHHHHHHHHHHHHHcCCcccccceEeee
Confidence 4699999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCceeccCCcceeeccEEEEecccccCCCeeeEEEeEeeeccccccccccCC----CCCcccccccccccee
Q 043020 150 QYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFGITRVHMEEDAGKLLHADD----GEYSQEITFPIIYALQ 225 (564)
Q Consensus 150 ~YfYpDlPkGYQITQ~~~PI~~~G~i~~~~~~~~~~~~k~i~I~rihLEEDagK~~h~~~----~~~~~~~~~~~~~~~l 225 (564)
||||||||||||||||+.|||.||+|++++ +|..|+|+|+||||||||||++|++. .++ ++
T Consensus 81 nYfYpDlPkgYQITQ~~~Pi~~~G~l~i~~----~g~~k~I~I~rihlEEDagK~~h~~~~~~~~~~-----------s~ 145 (482)
T 3al0_B 81 NYFYPDLPKGYQISQYFYPIATEGFLEIDG----DEGRKKVRIRRLHLEEDAGKLVHEGDSITRASY-----------SL 145 (482)
T ss_dssp ECCBTTBTTSEEEECSSSCSBCCEEEEECC----SSSSEEEEEEEEEEECCCCEEEETTBSSSCCSE-----------EE
T ss_pred eccCCCCCCCcccccCcCcEECCcEEEEEe----CCceEEEEEEEEeeccchhhhhccccccCCCCc-----------eE
Confidence 999999999999999999999999999975 45569999999999999999999742 222 46
Q ss_pred eeecCCCCceeEEeeCCCCCCHHHHHHHHHHHHHHHHHhCcccCCcCCCcccccccccccCCCCCCCccEEEEcCCCChH
Q 043020 226 VDLNRAGVPLLEIVSEPDMRTGLEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFS 305 (564)
Q Consensus 226 vD~NRaGvPLiEIVTePd~~s~~EA~~~~~~L~~ilr~lgvs~g~meeGslR~DvNVSv~~~g~~~~g~rvEIKNlnS~~ 305 (564)
|||||||||||||||+|||+||+||++|+++||++|||+|+|||+||+|+||||||||||+.|+.+|||||||||||||+
T Consensus 146 vD~NRaGvPLiEIVTePd~~s~eeA~~~~~~L~~il~~lgvsd~~meeGslR~DvNVSvr~~g~~~~gtR~EiKNlnS~~ 225 (482)
T 3al0_B 146 VDMNRCGVPLIEIVTEPDISSPREARVFMEKLRSIVRYLGVSTGDMEKGALRCDANISVVDTETGRQSNRVEVKNMNSFR 225 (482)
T ss_dssp EEGGGTTCCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTSEEEEEECCCCSSSCSSCCCCCCCCCCCSSH
T ss_pred EecCCCCCceEEEecCCCCCCHHHHHHHHHHHHHHHHHhCCCCCccccCceeccceeeecCCCCCCCCceEEEechhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCccccccceeecCCCeeEeccCCCCCCCCCcCcCCCCCceecChHHHHHHHhcCCCCH
Q 043020 306 SINRAIDFEIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILNKEYVDSIQSSLPELP 385 (564)
Q Consensus 306 ~i~~AI~~Ei~RQ~~ll~~g~~~~i~qETR~wd~~~~~T~~mR~Ke~~~DYRy~PEpdLpp~~l~~e~i~~i~~~lPElP 385 (564)
+|++||+||+.||+++|+.|+ .|.||||+||+.+|.|++||+||+++|||||||||||||.|+++|+++++++|||||
T Consensus 226 ~v~~Ai~yE~~RQ~~~l~~G~--~v~qETR~~d~~~g~T~~mR~Ke~a~DYRyfPepDLpp~~i~~~~ie~i~~~lPElP 303 (482)
T 3al0_B 226 FVERALEYEFERIVKAMERGE--DVERETRGWDMATKITVSMRGKEEESDYRYFPEPDIPPVVLSDEYLEEVKKELPELP 303 (482)
T ss_dssp HHHHHHHHHHHTTSSSSSSSC--CCCCCCCEEETTTTEEECCSSCCCSCCCCCEECTTSCCEECCHHHHTTSSSSSCCCT
T ss_pred HHHHHHHHHHHHHHHHHHcCC--CeEeEEccccCCCCeEeecccCCCccccCCCCCCCCCcEEcCHHHHHHHHhcCCCCH
Confidence 999999999999999999996 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HcCCCHHHHHHHHhChhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCcccccCCHHHHHHHHHHH
Q 043020 386 EMKRRRYE-EMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELIASI 464 (564)
Q Consensus 386 ~~~~~Rl~-~ygLs~~dA~~L~~d~~la~yFE~~v~~~~~pk~vaNWi~~ell~~L~~~~~~i~~~~ispe~LaeLI~li 464 (564)
+++++||. +||||.+||.+|++++.+++|||++++.+.+|+.+||||++|++++||+.++++++++++|++|++|+++|
T Consensus 304 ~~~~~R~~~eygls~~dA~~L~~~~~~a~~fe~~~~~~~~~k~~anw~~~el~~~ln~~~~~i~~~~i~p~~la~li~li 383 (482)
T 3al0_B 304 DEKAERFMREYGLPEYDAKVLTSSKELAEFFEECVKVVNRPKDLSNWIMTEVLRELNERNIEITESKLTPQHFADLFKLM 383 (482)
T ss_dssp THHHHHHHHHHSCCHHHHHHHTSSHHHHHHHHHHHHHSCCHHHHHHHHHTHHHHHTTTTTCCTTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHcChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCCHhhcCCCHHHHHHHHHHH
Confidence 99999996 79999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred HcCccchHHHHHHHHHHHHcCCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhChHHHHHhhcCccchhhHHHhHHhhhcC
Q 043020 465 KGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKISK 544 (564)
Q Consensus 465 ~~g~IS~k~AK~il~~ll~~~~~~~~IIee~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk~Gk~k~~gflmGqVMk~tk 544 (564)
++|+||+++||++|.+|++++++|.+||+++||+|+||+++|+++|++||++||++|++|++||+|++|||||||||+++
T Consensus 384 ~~g~Is~~~ak~vl~~~~~~~~~p~~IIe~~gl~qiSDe~el~~iV~evIa~np~~v~~~k~Gk~k~~G~lmGqVMk~tk 463 (482)
T 3al0_B 384 DEGKISIKIAKEIFPEVFETGKMPSQIVEEKGLTQINDEKLIEELVKKAMEQNPKAVQDYKSGKKKAAGFFVGYVMRETK 463 (482)
T ss_dssp TTTSSCTTHHHHSHHHHHHHCCCHHHHHHHHTCCCCCCSSCHHHHHHHHHHTCHHHHHHHTTCCTTSTHHHHHHHHHTTS
T ss_pred HcCCccHHHHHHHHHHHHhcCCCHHHHHHHhCCccCCcHHHHHHHHHHHHHhChHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999988999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHhh
Q 043020 545 GKANPGLLNKILLEKLN 561 (564)
Q Consensus 545 GkAdPk~V~~il~e~L~ 561 (564)
|||||+.|+++|+++|+
T Consensus 464 GkADp~~V~~llke~L~ 480 (482)
T 3al0_B 464 GKANPELTNRIIQKLLE 480 (482)
T ss_dssp SCSCHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 99999999999999997
No 4
>3kfu_F Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=100.00 E-value=3.4e-159 Score=1265.04 Aligned_cols=421 Identities=44% Similarity=0.759 Sum_probs=402.8
Q ss_pred ccceeeeeeeeeeccCCcccccCCCCCC-CCCCCCccCceecCCCCCCccCCHHHHHHHHHHHHHcCCccCCCccccccc
Q 043020 72 EYEAIIGIETHVQLSTLTKAFCTCPYNY-GAQPNTSVCPICMGLPGALPVVNSKVVEFAVKLGLALNCKLSFNSKFDRKQ 150 (564)
Q Consensus 72 ~~e~vIGLEiHvQL~T~tKlFc~c~~~~-~~~PNt~vc~v~lg~PGtLP~lN~~av~~Ai~~~lALnc~I~~~s~FdRK~ 150 (564)
.||+||||||||||+|+|||||+|++.| |++|||+|||||+|+||+|||||++||++|+++|+||||+|++.++|||||
T Consensus 1 ~~e~vIGLEvHvqL~T~tKlFc~c~t~f~g~~PNt~vcpvclglPG~LPvlN~~ave~Ai~~glALnc~I~~~s~FdRKn 80 (466)
T 3kfu_F 1 MYEAVIGLEVHLHLKTRTKMFCGCRADYFGAEPNTHTCPVCLGLPGALPVPNRVAVEHGLRLALALGAEVPERLVFHRKN 80 (466)
T ss_dssp CCCEEEEEEEEEEBCCSSCSSSCSCCCCSSCCTTSSCCTTTTTCTTCCCCCBHHHHHHHHHHHHHHTEECCSEECCEEEE
T ss_pred CcceEEEEEEEEEeCCCCCCcCCCCCCCCCCCCCCccCccccCCCCCccccCHHHHHHHHHHHHHcCCcccccceEeecc
Confidence 4999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCceeccCCcceeeccEEEEecccccCCCeeeEEEeEeeeccccccccccCCCCCccccccccccceeeeecC
Q 043020 151 YFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFGITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNR 230 (564)
Q Consensus 151 YfYpDlPkGYQITQ~~~PI~~~G~i~~~~~~~~~~~~k~i~I~rihLEEDagK~~h~~~~~~~~~~~~~~~~~~lvD~NR 230 (564)
|||||||||||||||+.|||.||+|+++ | |+|+|+||||||||||++|.+ ++ ++|||||
T Consensus 81 YFYpDlPkGYQITQ~~~PIa~~G~l~i~------g--k~I~I~rihLEEDaGK~ih~~--~~-----------slvD~NR 139 (466)
T 3kfu_F 81 YFYPDLPKNYQISQYDLPLGRGGSLPLG------E--RRVRIKRLHLEEDAGKSLHLE--GR-----------TLLDLNR 139 (466)
T ss_dssp CCCTTCTTSEEEECSSSCSEEECEEEET------T--EEEEEEEEEEEECCCEEEEET--TE-----------EEEETTS
T ss_pred ccCCCCCcCcccccccCCEecCcEEEEC------C--eEEeeEEEEecccccccccCC--Cc-----------eEEecCC
Confidence 9999999999999999999999999982 3 899999999999999999973 23 3599999
Q ss_pred CCCceeEEeeCCCCCCHHHHHHHHHHHHHHHHHhCcccCCcCCCcccccccccccCCCCCCCccEEEEcCCCChHHHHHH
Q 043020 231 AGVPLLEIVSEPDMRTGLEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINRA 310 (564)
Q Consensus 231 aGvPLiEIVTePd~~s~~EA~~~~~~L~~ilr~lgvs~g~meeGslR~DvNVSv~~~g~~~~g~rvEIKNlnS~~~i~~A 310 (564)
||||||||||+|||+||+||++|+++||++|||+|||||+||+|+|||||||||++.|+ .+||||||||||||++|++|
T Consensus 140 aGvPLiEIVTePDirspeEA~ayl~~Lr~ilrylgvsdg~meeGslR~DvNVSvr~~g~-~~GtRvEIKNlNSfr~V~kA 218 (466)
T 3kfu_F 140 AGSPLIELVTEPDLKTPEEARLFLQRIQALVQTLGISDASPEEGKLRADVNVSVRRVGE-PLGTKVEIKNLNSFKSVQRA 218 (466)
T ss_dssp TTCEEEEEEECTTBCCHHHHHHHHHHHHHHHHHHTSBCCCGGGTCEEEEEEEEECCSSS-SCCCCEEEEEECCHHHHHHH
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccCcEEEeeeEEecCCCC-CCCceEEEecccCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCccccccceeecCCCeeEeccCCCCCCCCCcCcCCCCCceecChHHHHHHHhcCCCCHHHHHH
Q 043020 311 IDFEIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILNKEYVDSIQSSLPELPEMKRR 390 (564)
Q Consensus 311 I~~Ei~RQ~~ll~~g~~~~i~qETR~wd~~~~~T~~mR~Ke~~~DYRy~PEpdLpp~~l~~e~i~~i~~~lPElP~~~~~ 390 (564)
|+||+.||+++|+.|+ .|.||||+||+.+|+|++||+||+++|||||||||||||.|+++|+++++++|||||+++++
T Consensus 219 I~yEi~RQ~~lLe~Gg--~V~qETR~wd~~~g~T~~mR~KE~a~DYRYfPEPDLpPv~i~~e~ie~ir~~lPELP~~k~~ 296 (466)
T 3kfu_F 219 LEYEIRRQTEILRRGE--KVKQATMGFEEGSGKTYPMRTKEEEADYRYFPEPDLPPVAIPRDWLEEVRRSLPELPWEKEA 296 (466)
T ss_dssp HHHHHHHHHHHHTSSC--CCCCCEECEETTTTEECCC------CCCCCEECTTSCCEECCHHHHHHHHSSCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--CeeCccCcccCCCCEEEeCcccCccccCCcCCCCCCCcEecCHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999996 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHhChhhHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHhcCCCcccccCCHHHHHHHHHHHHcCcc
Q 043020 391 RYEEMGLSMQDVLFLANDINVARFFDATI-EKGADVKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELIASIKGATI 469 (564)
Q Consensus 391 Rl~~ygLs~~dA~~L~~d~~la~yFE~~v-~~~~~pk~vaNWi~~ell~~L~~~~~~i~~~~ispe~LaeLI~li~~g~I 469 (564)
||.+||||.+||.+|++++.+++|||+++ +.+.+|+.+||||++|++++||+.++++++++++|++|++|+++|++|+|
T Consensus 297 R~~~ygLs~~dA~~L~~~~~lad~FE~~v~~~~~~pk~aanWl~~el~~~Ln~~~~~i~~~~i~p~~la~Li~li~~g~I 376 (466)
T 3kfu_F 297 RYRALGIKEKDAEVLAYTPSLARFLDQALPLGLASPQALANWLLADVAGLLHERGLRLEETRLSPEGLARLVGLFERGEV 376 (466)
T ss_dssp HHTTTTCCHHHHHHHHSCHHHHHHHHHHTTSSSSCHHHHHHHHHTHHHHHHHHHTCCSTTSSCCHHHHHHHHHHHHTTSS
T ss_pred HHHHcCCCHHHHHHHHcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHCCCChhhCCCCHHHHHHHHHHHHcCCc
Confidence 99559999999999999999999999999 77889999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHcCCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhC
Q 043020 470 SGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSEN 517 (564)
Q Consensus 470 S~k~AK~il~~ll~~~~~~~~IIee~~l~qisD~~eL~~lV~eVi~~n 517 (564)
|+++||++|.+|++ +++|.+||+++||.|+||+++|+++|+......
T Consensus 377 s~k~AK~vl~~~~~-~~~p~~ive~~GL~qisD~~~I~~i~~~~~~~~ 423 (466)
T 3kfu_F 377 TSRVAKSLLPEVLE-GQDPEAXXXXXXXXXXXXXXXXXXXXXXXXXXX 423 (466)
T ss_dssp CHHHHHHHHHHHTT-TCCCCCCCCSSHHHHHHHHHHHSCGGGHHHHSS
T ss_pred cHHHHHHHHHHHHc-CCCHHHhhccccccccccccccccccccccccc
Confidence 99999999999999 899999999999999999999999999877654
No 5
>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Probab=100.00 E-value=4e-143 Score=1180.68 Aligned_cols=447 Identities=26% Similarity=0.398 Sum_probs=305.4
Q ss_pred cccceeeeeeeeeeccCCcccccCCCCCCCC-CC-------------------------------------CCccCceec
Q 043020 71 KEYEAIIGIETHVQLSTLTKAFCTCPYNYGA-QP-------------------------------------NTSVCPICM 112 (564)
Q Consensus 71 ~~~e~vIGLEiHvQL~T~tKlFc~c~~~~~~-~P-------------------------------------Nt~vc~v~l 112 (564)
..|+.+||||||+||+|+|||||+|++.||+ +| |+++||||+
T Consensus 4 ~~~~~viGLEiH~QL~T~tKlFc~c~t~~~~~~p~~~~~r~lr~~~selg~~D~aa~~e~~~~~~~~y~~~n~~~c~v~~ 83 (619)
T 2d6f_C 4 EKVGLKMGLEIHQQLDTESKLFCPCRTELTDSEPDHDIVRNLRPTQSELGKFDRAAFEEAMRKLHFHYENYHEETCLVEA 83 (619)
T ss_dssp HHHTCEEEEEEEEECCCSBCSSSCSBSSCCCSCCSEEEEEECCCC----------CTTTTGGGGEEEEEECTTTCCHHHH
T ss_pred hHcCeEEEEEEEEEecCCCcccCCCCccccCCCCcchhhhccccccccccccchhHHhhhhhcccccccCCCCCcCchhc
Confidence 4688999999999999999999999999965 76 999999999
Q ss_pred CCCCCCc-cCCHHHHHHHHHHHHHcCCccCCCccccccccCCCCCCCCceeccCCcceeeccEEEEecccccCCCeeeEE
Q 043020 113 GLPGALP-VVNSKVVEFAVKLGLALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFG 191 (564)
Q Consensus 113 g~PGtLP-~lN~~av~~Ai~~~lALnc~I~~~s~FdRK~YfYpDlPkGYQITQ~~~PI~~~G~i~~~~~~~~~~~~k~i~ 191 (564)
|+| || +||++||++|+++|+||||+|++.++|||||||||||||||||||+ ||.||+|+++ .++|+
T Consensus 84 ~~~--lP~~lN~~av~~Ai~~alaLn~~i~~~~~f~RK~yfypDlpkGyQiTq~---ia~~G~i~~~--------~~~i~ 150 (619)
T 2d6f_C 84 DEE--PPHPLNPEALEIAVTIALLLNMRVVDEFHTMRKQVIDGSNTGGFQRTGL---VATDGHLETP--------QGTVK 150 (619)
T ss_dssp TSS--CCCCCCHHHHHHHHHHHHHTTCEECSEECCEEEECTTSSSSSSEEEEEE---EEEEEEEEET--------TEEEE
T ss_pred CCC--CCccccHHHHHHHHHHHHHcCCcccccceeeeeeeecCCCCCchhhhHH---hhCCcEEEEe--------eeEEE
Confidence 998 88 8999999999999999999999999999999999999999999995 9999999984 27899
Q ss_pred EeEeeeccccccccccCCCCCccccccccccceeeeecCCCCceeEEeeCCCCCCHHHHHHHHHHHHHHHHHhCcccCCc
Q 043020 192 ITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNRAGVPLLEIVSEPDMRTGLEAAEYAAELQRLVRYLGVSNGNM 271 (564)
Q Consensus 192 I~rihLEEDagK~~h~~~~~~~~~~~~~~~~~~lvD~NRaGvPLiEIVTePd~~s~~EA~~~~~~L~~ilr~lgvs~g~m 271 (564)
|+||||||||||++|+++ ++ ++|||||||+|||||||+|||+||+||++|+++|+++|||+|+|+|
T Consensus 151 I~rihLEEDagK~ih~~~-~~-----------s~~dlNR~GiPLiEIvTePd~~speeA~~~~~~l~~ilr~~~v~~g-- 216 (619)
T 2d6f_C 151 IENLCLEEDAARRIRETG-DG-----------VVFRLDRLGIPLVEITTDPSMSDPQQLREVAYQIGQILRSTRVKRG-- 216 (619)
T ss_dssp EEEEEEEECCCEEEEEET-TE-----------EEEETTSTTCEEEEEECCSCCCCHHHHHHHHHHHHHHHTTSSCCCS--
T ss_pred EEEEEeccccchhcccCC-Cc-----------eEEecccCCCceEEEecCCCCCCHHHHHHHHHHHHHHHHHhCCccC--
Confidence 999999999999999742 23 4599999999999999999999999999999999999999999998
Q ss_pred CCCcccccccccccCCCCCCCccEEEEcCCCChHHHHHHHHHHHHHHHHHHH-------cCCC-----------------
Q 043020 272 QEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINRAIDFEIARQALLYS-------QGKA----------------- 327 (564)
Q Consensus 272 eeGslR~DvNVSv~~~g~~~~g~rvEIKNlnS~~~i~~AI~~Ei~RQ~~ll~-------~g~~----------------- 327 (564)
+|+|||||||||+ +||||||||||||++|++||+||+.||+++|+ +|+.
T Consensus 217 -~GslR~DvNVSi~------~G~RvEIKnvns~~~i~~ai~~E~~RQ~~ll~~~~el~~~g~~v~~~i~dvt~~f~~t~s 289 (619)
T 2d6f_C 217 -LGTIRQDLNISIR------DGARVEVKGVQDLDLIPEIVEREVKRQLSLVEIRDTLQERGAVVEDKIFDVSEVFADTES 289 (619)
T ss_dssp -STTCEEEEEEECT------TSCCEEEECCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECTTGGGTTCSC
T ss_pred -CCccccccccccC------CCceeEeeCCccHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCccccccchhhhhhccccc
Confidence 9999999999998 69999999999999999999999999999998 4630
Q ss_pred ------------------------------------------C-------------------------------------
Q 043020 328 ------------------------------------------D------------------------------------- 328 (564)
Q Consensus 328 ------------------------------------------~------------------------------------- 328 (564)
+
T Consensus 290 ~vi~~~g~v~a~~~~gf~g~~g~~~q~~rr~~te~~d~~k~~~~~g~~htdelp~ygi~~~ev~~l~~~~~~~~~da~~~ 369 (619)
T 2d6f_C 290 RIISSAESVLAVKLRGFDGLIGVEIQPGRRLGTEMADYAKKRGVSGIFHTDELPAYGITEEEVRGLRDAVGASQGDAVVM 369 (619)
T ss_dssp HHHHTSSEEEEEEETTCTTTSSSEEETTEEHHHHHHHHHHTTSCSCCEETTTTTCSSCCHHHHHHHHHHTTCCSSSEEEE
T ss_pred hhhhccceeEEeeccCcccccccccccCcccchhhhHHHHhhccCcccccccccccCccHHHHHHHHHHhcCCcccceEE
Confidence 0
Q ss_pred ------------------------ccccccceeecCCCeeEeccCCCCCCCCCcCcCCCCCceecChHHHHHHHhcCCCC
Q 043020 329 ------------------------QIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILNKEYVDSIQSSLPEL 384 (564)
Q Consensus 329 ------------------------~i~qETR~wd~~~~~T~~mR~Ke~~~DYRy~PEpdLpp~~l~~e~i~~i~~~lPEl 384 (564)
.|.||||+||+. |.|.+||+||++ ||||||||||||.|+++|+++++++||||
T Consensus 370 v~~~~~~~~~a~~~v~~R~k~a~~~v~~ETR~~~~~-g~T~~mR~ke~a--~RyfPepDlppi~i~~~~ie~i~~~lPEl 446 (619)
T 2d6f_C 370 VAHERVTAENALREVIRRAEMAIQGVPEETRKALPD-GNTQYLRPLPTS--SRMYLETDIPLFRIEDDLLEGIRRNLPEL 446 (619)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEECSS-SCEEEEEECCCC--CCEEECTTSCCEECCHHHHHHHHTTCCCC
T ss_pred eccchhhhhhhhhhHHHHHHhhhcccchhhhccCCC-CCEEeCCCCCCc--cCcccCCCcCcEecCHHHHHHHHhcCCCC
Confidence 166799999988 999999999999 69999999999999999999999999999
Q ss_pred HHHHHHHHH-HcCCCHHHHHHHHhChhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCcccccCCHHHHHHHHHH
Q 043020 385 PEMKRRRYE-EMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELIAS 463 (564)
Q Consensus 385 P~~~~~Rl~-~ygLs~~dA~~L~~d~~la~yFE~~v~~~~~pk~vaNWi~~ell~~L~~~~~~i~~~~ispe~LaeLI~l 463 (564)
|+++++||. +||||.++|.+|++++.+ +|||++++.+.+|+.++|||++++ +.||+.++++. +++|++|++||.+
T Consensus 447 p~~k~~r~~~~ygls~~~A~~l~~~~~~-~~fe~~~~~~~~~K~aaNWL~~el-~~Ln~~~i~i~--~lt~e~la~LI~l 522 (619)
T 2d6f_C 447 PSEKKERIMRDYGLSEDLASQLVKRNLV-DEFEALTEFRVDTTVIASLLAYTL-RELRREGHDVD--GLGLDELRDAIKL 522 (619)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHTTCT-TTC--------CCHHHHHTTTTHH-HHHTC---------------------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHcCcHH-HHHHHHHHhcCCHHHHHHHHHHHH-HHHHhcCCCcC--CCCHHHHHHHHHH
Confidence 999999997 699999999999999996 999999988889999999999995 99999998874 7999999999999
Q ss_pred HHcCccchHHHHHHHHHHHHcCCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhChHHHHHhhcCccchhhHHHhHHhhhc
Q 043020 464 IKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKIS 543 (564)
Q Consensus 464 i~~g~IS~k~AK~il~~ll~~~~~~~~IIee~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk~Gk~k~~gflmGqVMk~t 543 (564)
+.+|+||.++||+++..|++.++++.+||+++||.|+||+ +|+++|++||++||+.|++ |++|+||||||||||++
T Consensus 523 i~~gkIs~esAkevl~~L~e~e~~~~eIIee~gl~QlSDe-ELe~iV~eVIaeNp~~V~~---gk~K~mG~lmGqVMK~t 598 (619)
T 2d6f_C 523 LEVGKISKDALRDIVACMADEGLAAEDAARKLNLLLLAED-EIESIIQEIVEGNLDMISE---RGMGAMGPLMGQAMGRL 598 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHcCchhHHHHHHHHHHHHhcCCCHHHHHHHhCcccCCHH-HHHHHHHHHHHhChHHHhh---cCHhHHHHHHHHHHHHh
Confidence 9999999999999999999888899999999999999975 9999999999999999988 68999999999999999
Q ss_pred CCCCChHHHHHHHHHHhhc
Q 043020 544 KGKANPGLLNKILLEKLNA 562 (564)
Q Consensus 544 kGkAdPk~V~~il~e~L~~ 562 (564)
+|||||+.|+++|+++|+.
T Consensus 599 kGKADpk~VnelLke~L~~ 617 (619)
T 2d6f_C 599 RGRADGKVVNRILREKIQE 617 (619)
T ss_dssp -------------------
T ss_pred cCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999974
No 6
>1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Probab=100.00 E-value=1.5e-140 Score=1162.62 Aligned_cols=443 Identities=26% Similarity=0.385 Sum_probs=304.8
Q ss_pred cceeeeeeeeeeccCCcccccCCCCCCCCCC-------------------------------------CCccCceecCCC
Q 043020 73 YEAIIGIETHVQLSTLTKAFCTCPYNYGAQP-------------------------------------NTSVCPICMGLP 115 (564)
Q Consensus 73 ~e~vIGLEiHvQL~T~tKlFc~c~~~~~~~P-------------------------------------Nt~vc~v~lg~P 115 (564)
|+.+||||||+||+|+ ||||+|++.||++| |+++||||+|+|
T Consensus 13 ~~~viGLEiH~QL~T~-KlFc~c~t~~~~~pn~~~~r~lr~~~selg~~D~aa~~e~~~~~~~~y~~~n~~~c~V~~~~~ 91 (633)
T 1zq1_C 13 LGLKVGLEIHRQLDTK-KLFSPVPSELSDKVEFTFQRRLRPTMSELGEIDPAALEEFKKGRVYVYEGNYELTDLVYMDEE 91 (633)
T ss_dssp TTCCBEEEEEEEBSSB-CTTSSCBCCCCSCCCEEEEECCCCCEETTSCBCHHHHHHHHTTCEEEEEECTTTCBGGGTTSS
T ss_pred cCcEEEEEEEEEECCc-cccCCCCcccCCCccchhhhccccccccccccchhhHhhhhhcccccccCCCCccCchhcCCC
Confidence 4499999999999999 99999999999997 599999999998
Q ss_pred CCCc-cCCHHHHHHHHHHHHHcCCccCCCccccccccCCCCCCCCceeccCCcceeeccEEEEecccccCCCeeeEEEeE
Q 043020 116 GALP-VVNSKVVEFAVKLGLALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFGITR 194 (564)
Q Consensus 116 GtLP-~lN~~av~~Ai~~~lALnc~I~~~s~FdRK~YfYpDlPkGYQITQ~~~PI~~~G~i~~~~~~~~~~~~k~i~I~r 194 (564)
|| +||++||++|+++|+||||+|++.++|||||||||||||||||||+ ||.||+|+++ .++|+|+|
T Consensus 92 --lP~~lN~~av~~Ai~~alaln~~i~~~~~f~RK~yfypDlpkGyQiTq~---ia~~G~i~~~--------~~~i~I~~ 158 (633)
T 1zq1_C 92 --PPRGPDREALEVALQIAYLLNAKPVDEVYYMRKIVIDGSNVSGFQRTAI---IATDGKVETP--------WGAVGIPT 158 (633)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTTCEECSEECCEEEECSSSSSTTSEEEECE---EEEEEEECCT--------TCCEEEEE
T ss_pred --CCccccHHHHHHHHHHHHHcCCcccccceeeeeeeecCCCCcchhhhhh---hcCCeEEEee--------eeEEEEEE
Confidence 88 8999999999999999999999999999999999999999999995 9999999873 27899999
Q ss_pred eeeccccccccccCCCCCccccccccccceeeeecCCCCceeEEeeCCCCCCHHHHHHHHHHHHHHHHHhC-cccCCcCC
Q 043020 195 VHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNRAGVPLLEIVSEPDMRTGLEAAEYAAELQRLVRYLG-VSNGNMQE 273 (564)
Q Consensus 195 ihLEEDagK~~h~~~~~~~~~~~~~~~~~~lvD~NRaGvPLiEIVTePd~~s~~EA~~~~~~L~~ilr~lg-vs~g~mee 273 (564)
|||||||||++|+++ ++ ++|||||||+|||||||+|||+||+||++|+++||++|||+| +|+| +
T Consensus 159 ihlEEDagK~ih~~~-~~-----------s~~dlNR~GiPLiEIvTePdi~speeA~~~~~~l~~ilr~~g~v~~g---~ 223 (633)
T 1zq1_C 159 ICLEEDAARIIERKD-KE-----------VIYRLDRLGIPLIEISTTPDIHHPEQAKVVAKFIGDALRATKKVKRG---L 223 (633)
T ss_dssp EEEEECCCEEEEEET-TE-----------EEEESTTTTCEEEEEECCTTBCSHHHHHHHHHHHHHHHHHTSCBCCS---S
T ss_pred EEeccccchhhccCC-Cc-----------eEEeccCCCCceEEEecCCCCCCHHHHHHHHHHHHHHHHHhCCcccC---C
Confidence 999999999999743 23 459999999999999999999999999999999999999999 8888 9
Q ss_pred CcccccccccccCCCCCCCccEEEEcCCCChHHHHHHHHHHHHHHHHHHH-------cCC--------------------
Q 043020 274 GSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINRAIDFEIARQALLYS-------QGK-------------------- 326 (564)
Q Consensus 274 GslR~DvNVSv~~~g~~~~g~rvEIKNlnS~~~i~~AI~~Ei~RQ~~ll~-------~g~-------------------- 326 (564)
|+|||||||||+ +||||||||||||++|++||+||+.||+++|+ +|.
T Consensus 224 GslR~DvNVSi~------~G~RvEIKnvnS~~~i~~ai~~E~~RQ~~ll~~~~el~~~g~~~~~v~~~~~dvt~~f~~t~ 297 (633)
T 1zq1_C 224 GTIRQDLNVSIK------GGARIEIKGVQELDMIPIIIEREVERQLNLLKIRDELRKRGVKPKDIKEEFYDVTDIFENTK 297 (633)
T ss_dssp TTEEEEEEECCT------TSCCEEEECCCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHCCCGGGSCCCCEECTTTTTTCS
T ss_pred CccccccccccC------CCceeEeeCCccHHHHHHHHHHHHHHHHHHHhhhhhhhccCcccccccccccchhhhhcccc
Confidence 999999999998 59999999999999999999999999999997 231
Q ss_pred ----------CCcc------------------------------------------------------------------
Q 043020 327 ----------ADQI------------------------------------------------------------------ 330 (564)
Q Consensus 327 ----------~~~i------------------------------------------------------------------ 330 (564)
++.|
T Consensus 298 s~vi~~~l~~Gg~v~~~~~~gf~g~~g~e~q~trr~~te~~d~~k~~~ggi~hsdelp~ygi~~~ev~~lr~~~~~~~~d 377 (633)
T 1zq1_C 298 SKIIARVIKKGGKVLAIKLPKFRGLIGREIQPGRRLGTEFADRAKKYVPGIFHIDELPNYGISQEEVNKVIERLNLSEED 377 (633)
T ss_dssp CHHHHHHHHTTCEEEECEETTCTTTSSSEEETTEEHHHHHHHHHTTTCSCCEEGGGCSBTTBCHHHHHHHHHHTTCCSSC
T ss_pred hHhhhhhhccCCeEEEEeccCcccccccccccccccchhHHHHHHHhhcCccccccccccCccHHHHHHHHHhhccCccc
Confidence 0133
Q ss_pred ------------------------------ccccceeecCCCeeEeccCCCCCCCCCcCcCCCCCceecChHHHHHHHhc
Q 043020 331 ------------------------------VQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILNKEYVDSIQSS 380 (564)
Q Consensus 331 ------------------------------~qETR~wd~~~~~T~~mR~Ke~~~DYRy~PEpdLpp~~l~~e~i~~i~~~ 380 (564)
.||||+||+. |.|.+||+||++ ||||||||||||.|+++|+++++++
T Consensus 378 a~~~v~~~~~~~~~a~~~v~~R~~~a~~gv~~ETR~~~~~-g~T~~mR~ke~a--~RyfPepDlppi~i~~~~i~~i~~~ 454 (633)
T 1zq1_C 378 AFVLVAAEEEKAKNALREVIKRAREAIEGVPEETRRALPD-GNTEYMRPLPGK--ARMYPETDIPPLRIPDDLKKKIKEN 454 (633)
T ss_dssp EEEEEEESHHHHHHHHHHHHHHHHHHHHCCCCCEEEECTT-SCEEEEECCCCC--CCEEECTTSCCEECCHHHHHHHHTS
T ss_pred ceEEeccchhhhhhhhhHHHHHHHHhhhccchhheeeCCC-CCEEeCCCCCcc--cCcccCCCcCcEecCHHHHHHHHhc
Confidence 4688888888 999999999999 8999999999999999999999999
Q ss_pred CCCCHHHHHHHHH-HcCCCHHHHHHHHhChhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCcccccCCHHHHHH
Q 043020 381 LPELPEMKRRRYE-EMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAE 459 (564)
Q Consensus 381 lPElP~~~~~Rl~-~ygLs~~dA~~L~~d~~la~yFE~~v~~~~~pk~vaNWi~~ell~~L~~~~~~i~~~~ispe~Lae 459 (564)
|||||+++++||. +||||.++|.+|++++.+ +|||++++.+.+|+.++|||++++. .|++. ++ ..+++|++|++
T Consensus 455 lPElp~~k~~r~~~~ygls~~~A~~l~~~~~~-d~FE~~v~~~~~pK~aanWL~~el~-~L~~~-i~--~~~lt~e~la~ 529 (633)
T 1zq1_C 455 LPELPQAKVERYVKEYKLDRSLAQTLVDDERD-ELFEELVSMGVKPSLAASILVVVLK-GLRKE-VP--IENVTDEHIRE 529 (633)
T ss_dssp CCCCHHHHHHHHHTTTCCCHHHHHHHHHTSTH-HHHHHHHHTTCSTTHHHHHHHHTTC-C--------------------
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHhchHH-HHHHHHHHhcCCHHHHHHHHHHHHH-HHHHh-cc--cCCCCHHHHHH
Confidence 9999999999997 799999999999999986 9999999888899999999999986 47776 55 46899999999
Q ss_pred HHHHHHcCccchHHHHHHHHHHHHc-CCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhChHHHHHhhcCccchhhHHHhH
Q 043020 460 LIASIKGATISGKIGKEILFELMAK-GGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQ 538 (564)
Q Consensus 460 LI~li~~g~IS~k~AK~il~~ll~~-~~~~~~IIee~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk~Gk~k~~gflmGq 538 (564)
||.++.+|+||.++||+++..|+.. +.++.+||+++||.|+||+ +|+++|++||++||+.|++ |++|+|||||||
T Consensus 530 LI~li~~gkIs~~sAkevl~~~~~~~~~~~~eIIee~gl~QlSDe-ELe~iV~eVIaeNp~~V~~---gk~K~mG~lmGq 605 (633)
T 1zq1_C 530 AFQLYLEGKIAKEAFEEIFKELARNPSKSAREVAEEKGLTLLSEE-EVTRIIEEVIQQNIEVVKA---KGMGAMGLIMGR 605 (633)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHcCcccHHHHHHHHHHHhccCCCCHHHHHHHhCcccCCHH-HHHHHHHHHHHhChHHHhh---cCHhHHHHHHHH
Confidence 9999999999999999999999865 6689999999999999974 9999999999999999988 689999999999
Q ss_pred HhhhcCCCCChHHHHHHHHHHhhc
Q 043020 539 VMKISKGKANPGLLNKILLEKLNA 562 (564)
Q Consensus 539 VMk~tkGkAdPk~V~~il~e~L~~ 562 (564)
|||+++|||||+.|+++|+++|+.
T Consensus 606 VMK~tkGKADpk~VnelLke~L~~ 629 (633)
T 1zq1_C 606 VMAKVRGKADGKLVSQIVRRKLQE 629 (633)
T ss_dssp ------------------------
T ss_pred HHHHhCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999974
No 7
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=100.00 E-value=8.7e-39 Score=363.29 Aligned_cols=175 Identities=30% Similarity=0.484 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHhChhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCcccccCCHHHHHHH
Q 043020 381 LPELPEMKRRRYEEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAEL 460 (564)
Q Consensus 381 lPElP~~~~~Rl~~ygLs~~dA~~L~~d~~la~yFE~~v~~~~~pk~vaNWi~~ell~~L~~~~~~i~~~~ispe~LaeL 460 (564)
||+.+.++++||.+||||.+||.+|++++.+++|||+++. +.+|+.+||||++||+++||+.++ +|+|++|++|
T Consensus 677 LPe~~~~r~~R~~eyGLs~~dA~vL~~~~~ladyFE~v~~-~~~pk~aANWl~~eL~~~Ln~~~~-----~itp~~LaeL 750 (851)
T 2hz7_A 677 LTPEQDAEFTRLLGLGASEGDARTIARDPALLAFVGGAAP-GDTFAQVASWTVNELVAGLRAGEV-----KVRAADLAPL 750 (851)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCCHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhCCC-----CCCHHHHHHH
Confidence 8888888999988999999999999999999999999964 678999999999999999999987 7999999999
Q ss_pred HHHHHcCccchHHHHHHHHHHHHcCCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhChHHHHHhhcCccchhhHHHhHHh
Q 043020 461 IASIKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVM 540 (564)
Q Consensus 461 I~li~~g~IS~k~AK~il~~ll~~~~~~~~IIee~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk~Gk~k~~gflmGqVM 540 (564)
|++|++|+||+++||+||.+|++++++|.+||+++||.||||+++|+++|++||++||++|++|++||+|++||||||||
T Consensus 751 i~LI~~g~IS~k~AK~Vl~~m~~~~~~p~eIVee~GL~qISD~~eLe~iV~eVIa~Np~~Ve~yr~GK~ka~gfLVGQVM 830 (851)
T 2hz7_A 751 AEGVASGQLSARIAREALARAAASGDAPLTIIEREGLNAGLSAEALQQVVAQVIAANPDKAEAYRGGKTALLGFFTGQVM 830 (851)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHcCCccHHHHHHHHHHHHhcCCCHHHHHHHcCCCcCCCHHHHHHHHHHHHHHCHHHHHHHHcccHhHHHHHHHHHH
Confidence 99999999999999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCChHHHHHHHHHHhh
Q 043020 541 KISKGKANPGLLNKILLEKLN 561 (564)
Q Consensus 541 k~tkGkAdPk~V~~il~e~L~ 561 (564)
|+|+|||||++|+++|+++|+
T Consensus 831 K~tkGKAnP~~VnelL~ekL~ 851 (851)
T 2hz7_A 831 RATAGKADPQALAAALKDALA 851 (851)
T ss_dssp ---------------------
T ss_pred HHhCCCCCHHHHHHHHHHHhC
Confidence 999999999999999999984
No 8
>1ng6_A Hypothetical protein YQEY; structural genomics, domain GATB/YQEY, PFAM02637, DUF186, PSI, protein structure initiative; 1.40A {Bacillus subtilis} SCOP: a.182.1.1
Probab=99.79 E-value=3e-19 Score=166.23 Aligned_cols=113 Identities=23% Similarity=0.284 Sum_probs=98.0
Q ss_pred HHHHHHHhcCCCcccccCCHHHHHHHHHHHHcCccchHHHHHHHHHHHHcCC---CHH-----HHHHhcCCCCCCCHHHH
Q 043020 435 DIAAYMKNEKLTINEIKLSAAELAELIASIKGATISGKIGKEILFELMAKGG---TVK-----GIIIEKDLVQIVDPSEI 506 (564)
Q Consensus 435 ell~~L~~~~~~i~~~~ispe~LaeLI~li~~g~IS~k~AK~il~~ll~~~~---~~~-----~IIee~~l~qisD~~eL 506 (564)
-+.+.++...++..+.+++|+++.+||.++. +++|++++.+++.++ ++. +||++++|.|+||+ +|
T Consensus 28 ~l~aai~~~e~~~~~~~lt~~~l~~li~~~~------K~~ke~~~~~~~~gr~dl~~~e~~e~~iie~~~~~qlsd~-el 100 (148)
T 1ng6_A 28 MVKASLQNEAIKLKKDSLTEDEELTVLSREL------KQRKDSLQEFSNANRLDLVDKVQKELDILEVYLPEQLSEE-EL 100 (148)
T ss_dssp HHHHHHHHHHHHTTSSCCCHHHHHHHHHHHH------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHGGGSCCCCCHH-HH
T ss_pred HHHHHHHHhhhccCCCCCCHHHHHHHHHHHH------HHHHHHHHHHHHcCCcccchhhhHHHHHHHHhCcccCCHH-HH
Confidence 3445555555554447899999999999998 899999999997764 466 99999999999975 99
Q ss_pred HHHHHHHHHhChHHHHHhhcCccchhhHHHhHHhhhcCCCCChHHHHHHHHHHhh
Q 043020 507 EKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKISKGKANPGLLNKILLEKLN 561 (564)
Q Consensus 507 ~~lV~eVi~~np~~Ve~yk~Gk~k~~gflmGqVMk~tkGkAdPk~V~~il~e~L~ 561 (564)
+++|+++|++||+ +| .+++|||||+||++++|||||+.|+++|+++|+
T Consensus 101 ~~iV~evi~~~~~------~g-~k~~G~vmG~vmk~~~GkAD~~~v~~lvk~~L~ 148 (148)
T 1ng6_A 101 RTIVNETIAEVGA------SS-KADMGKVMGAIMPKVKGKADGSLINKLVSSQLS 148 (148)
T ss_dssp HHHHHHHHHHTTC------CS-GGGHHHHHHHHHHHHTTTSCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHCcc------cC-HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhC
Confidence 9999999999985 45 899999999999999999999999999999984
No 9
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.0024 Score=61.33 Aligned_cols=161 Identities=15% Similarity=0.168 Sum_probs=117.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhChhhHHHHHHHHHh-cCC---HHHHHHHHHHHHHHHHHhcCCCcccccCCHHHHHHHH
Q 043020 386 EMKRRRYEEMGLSMQDVLFLANDINVARFFDATIEK-GAD---VKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELI 461 (564)
Q Consensus 386 ~~~~~Rl~~ygLs~~dA~~L~~d~~la~yFE~~v~~-~~~---pk~vaNWi~~ell~~L~~~~~~i~~~~ispe~LaeLI 461 (564)
++..+.|...||+...|.-.+.++.++.=+..++.. +.. ++...+.| .-+...++... ..+...|+
T Consensus 5 ~~l~~lf~~iGL~e~kaket~kN~kls~~L~~~i~ea~~~~~~dk~~g~LL-y~latk~k~~~---------~~~r~~l~ 74 (187)
T 3tl4_X 5 EELTQLFSQVGFEDKKVKEIVKNKKVSDSLYKLIKETPSDYQWNKSTRALV-HNLASFVKGTD---------LPKSELIV 74 (187)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTTSHHHHHHHHHHHHTSCTTCCCCHHHHHHH-HHHHHHHTTCC---------CTTHHHHH
T ss_pred HHHHHHHHHcCCChhHHHHHHhCHHHHHHHHHHHHHccccCCCCHHHHHHH-HHHHHhccCcc---------chhHHHHH
Confidence 455667788999999999999999988888887763 211 44554443 44545454321 23678999
Q ss_pred HHHHcCccch-HHHHHHHHHHHH--cCCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhChHHHHHhhcCccchhhHHHhH
Q 043020 462 ASIKGATISG-KIGKEILFELMA--KGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQ 538 (564)
Q Consensus 462 ~li~~g~IS~-k~AK~il~~ll~--~~~~~~~IIee~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk~Gk~k~~gflmGq 538 (564)
..|.+|.|.. -+--..+.-+.. ..-+..+.=++-|....-.+++|++.|+++|++|.+.+.+-| -+.+|.+||+
T Consensus 75 ~~I~~gklkt~~Qv~AAl~yl~~~~~~id~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~i~~~R---Y~~~g~ll~~ 151 (187)
T 3tl4_X 75 NGIINGDLKTSLQVDAAFKYVKANGEASTKMGMNENSGVGIEITEDQVRNYVMQYIQENKERILTER---YKLVPGIFAD 151 (187)
T ss_dssp HHHHTTSCCSHHHHHHHHHHHHHHGGGCCHHHHHHTTTTTCCCCHHHHHHHHHHHHHHTHHHHHHHG---GGGHHHHHHH
T ss_pred HHHHhccCCcHHHHHHHHHHHHhCCCCCCHHHHHHHCCCCeEeCHHHHHHHHHHHHHHhHHHHHHhc---cccHHHHHHH
Confidence 9999999954 444444544433 345788888999998666699999999999999988776533 3478999999
Q ss_pred Hhh--hcCCCCChHHHHHHHHHHh
Q 043020 539 VMK--ISKGKANPGLLNKILLEKL 560 (564)
Q Consensus 539 VMk--~tkGkAdPk~V~~il~e~L 560 (564)
|-+ ..+ =|||+.|+.+|.+.+
T Consensus 152 vr~~p~Lk-WAd~~~vK~~vD~~~ 174 (187)
T 3tl4_X 152 VKNLKELK-WADPRSFKPIIDQEV 174 (187)
T ss_dssp HHTCGGGT-TSCTTSHHHHHHHHH
T ss_pred HhcccCCC-CCCHHHHHHHHHHHH
Confidence 865 454 599999999988765
No 10
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=58.92 E-value=31 Score=28.65 Aligned_cols=59 Identities=19% Similarity=0.151 Sum_probs=40.8
Q ss_pred CCCCCcCcCCCCCceecChHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHhChhhHHHHHHHHHhcCCHHHHHHHH
Q 043020 353 LADYRYFPEPDLPEVILNKEYVDSIQSSLPELPEMKRRRYEEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWI 432 (564)
Q Consensus 353 ~~DYRy~PEpdLpp~~l~~e~i~~i~~~lPElP~~~~~Rl~~ygLs~~dA~~L~~d~~la~yFE~~v~~~~~pk~vaNWi 432 (564)
..++.++|++| |.+. ...++.+++..+.|.++|++...|...+. ..+.|...|+.||
T Consensus 8 ~p~~~~~~~~d-~~~~----------~~~~~~~ee~I~~Lv~MGF~~~~A~~AL~------------~t~gdve~A~e~L 64 (83)
T 1veg_A 8 NPHMWWLQDAD-PENN----------SRQASPSQESINQLVYMGFDTVVAEAALR------------VFGGNVQLAAQTL 64 (83)
T ss_dssp SCCCCCSCCSC-SSCC----------SSSCCCCHHHHHHHHHHSCCHHHHHHHHH------------HTTTCHHHHHHHH
T ss_pred ChhhhccCccc-hhhc----------cccCCCCHHHHHHHHHcCCCHHHHHHHHH------------HcCCCHHHHHHHH
Confidence 35677888877 2222 23344467788999999999998875432 2356788899998
Q ss_pred HH
Q 043020 433 MG 434 (564)
Q Consensus 433 ~~ 434 (564)
++
T Consensus 65 ~s 66 (83)
T 1veg_A 65 AH 66 (83)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 11
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=56.39 E-value=29 Score=27.83 Aligned_cols=42 Identities=12% Similarity=0.281 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHhChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043020 381 LPELPEMKRRRYEEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMG 434 (564)
Q Consensus 381 lPElP~~~~~Rl~~ygLs~~dA~~L~~d~~la~yFE~~v~~~~~pk~vaNWi~~ 434 (564)
.++.+++..++|.++|++...|..-+ ...+.+...|++||++
T Consensus 25 ~~~~~~~~v~~L~~MGF~~~~a~~AL------------~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 25 TSDIDQSSVDTLLSFGFAEDVARKAL------------KASGGDIEKATDWVFN 66 (73)
T ss_dssp SCSSCHHHHHHHHHHTCCHHHHHHHH------------HHTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHH------------HHhCCCHHHHHHHHHh
Confidence 45667778888999999999886322 1234578899999864
No 12
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.87 E-value=18 Score=26.33 Aligned_cols=40 Identities=8% Similarity=0.229 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHhChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043020 382 PELPEMKRRRYEEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMG 434 (564)
Q Consensus 382 PElP~~~~~Rl~~ygLs~~dA~~L~~d~~la~yFE~~v~~~~~pk~vaNWi~~ 434 (564)
|+..++..+.|.++|++...|..-+ ....+...+++||++
T Consensus 6 ~~~~~~~v~~L~~MGF~~~~a~~AL-------------~~~~n~e~A~~~L~~ 45 (47)
T 2ekk_A 6 SGVNQQQLQQLMDMGFTREHAMEAL-------------LNTSTMEQATEYLLT 45 (47)
T ss_dssp CSSCHHHHHHHHHHHCCHHHHHHHH-------------HHSCSHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHH-------------HHcCCHHHHHHHHHc
Confidence 5666777888889999998875321 222378889999863
No 13
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=51.04 E-value=25 Score=24.87 Aligned_cols=38 Identities=13% Similarity=0.251 Sum_probs=26.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043020 385 PEMKRRRYEEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMG 434 (564)
Q Consensus 385 P~~~~~Rl~~ygLs~~dA~~L~~d~~la~yFE~~v~~~~~pk~vaNWi~~ 434 (564)
+++..++|.++|++..+|..-+. ..+.|...+++||++
T Consensus 4 ~e~~i~~L~~MGF~~~~a~~AL~------------~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 4 KSLAVEELSGMGFTEEEAHNALE------------KCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHH------------HHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHH------------HhCcCHHHHHHHHHc
Confidence 35567788899999988864321 124688899999864
No 14
>3a5i_A Flagellar biosynthesis protein FLHA; four domains, thioredoxin-like fold, bacterial flagellum BIO bacterial flagellum protein export; 2.80A {Salmonella typhimurium}
Probab=47.32 E-value=64 Score=33.95 Aligned_cols=92 Identities=18% Similarity=0.303 Sum_probs=63.9
Q ss_pred cCCHHHHHHHHHHHHcCccchHHHHHHHHHHHHcCCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhChHHHHHhhcCcc-
Q 043020 451 KLSAAELAELIASIKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKT- 529 (564)
Q Consensus 451 ~ispe~LaeLI~li~~g~IS~k~AK~il~~ll~~~~~~~~IIee~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk~Gk~- 529 (564)
.++...+.+++..+-...||-+.-+.||+.+.+.+ . .-.|.+.|.+-|+..|.. ..+.+|..+..
T Consensus 228 ~l~l~~i~~VLq~LL~E~VsIRdlrtIlEaLae~a-----------~-~~kD~~~LtE~VR~aL~R--~I~~~~~~~~~~ 293 (389)
T 3a5i_A 228 VVTLTTLHKVLQNLLAEKVPIRDMRTILETLAEHA-----------P-LQSDPHELTAVVRVALGR--AITQQWFPGNEE 293 (389)
T ss_dssp TSCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHG-----------G-GCCCHHHHHHHHHHHTHH--HHHHHHSCTTCC
T ss_pred CcCHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHh-----------c-ccCCHHHHHHHHHHHHHH--HHHHHHcCCCCe
Confidence 37788888888888888888888888888876432 1 124677788888887774 36677764322
Q ss_pred --------chhhHHHhHHhhhcCCCCChHHHHHHHHH
Q 043020 530 --------KLQGFFAGQVMKISKGKANPGLLNKILLE 558 (564)
Q Consensus 530 --------k~~gflmGqVMk~tkGkAdPk~V~~il~e 558 (564)
.+...|.+.+ +.+.| .||..+++++.+
T Consensus 294 L~vi~L~p~lE~~l~~si-~qt~G-L~P~~~~~l~~~ 328 (389)
T 3a5i_A 294 VQVIGLDTALERLLLQAL-QGGGG-LEPGLADRLLAQ 328 (389)
T ss_dssp EECBCCCTTHHHHHHHHH-HSSSC-CCTTHHHHHHHH
T ss_pred EEEEEeCHHHHHHHHHHh-cccCC-CCHHHHHHHHHH
Confidence 3455666544 44437 999998888765
No 15
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=38.55 E-value=1.5e+02 Score=27.10 Aligned_cols=64 Identities=19% Similarity=0.282 Sum_probs=45.7
Q ss_pred cCCHHHHHHHHHHHHcCccchHHHHHHHHHH-------HHcCCCHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 043020 451 KLSAAELAELIASIKGATISGKIGKEILFEL-------MAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLS 515 (564)
Q Consensus 451 ~ispe~LaeLI~li~~g~IS~k~AK~il~~l-------l~~~~~~~~IIee~~l~qisD~~eL~~lV~eVi~ 515 (564)
.++++++.++|-.+.+.-.+..+---+|.+- .-.|..+..|++++|+..-- ++.|..+|.++++
T Consensus 27 ~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rILk~~glapei-PEDL~~LikKAv~ 97 (151)
T 3u5c_N 27 KLSSESVIEQIVKYARKGLTPSQIGVLLRDAHGVTQARVITGNKIMRILKSNGLAPEI-PEDLYYLIKKAVS 97 (151)
T ss_dssp CSCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCSCHHHHSSSCHHHHHHHTTCCCSS-CHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHhhhHHhccCCCCCeeeecccHHHHHHHhCCCCCCC-cHHHHHHHHHHHH
Confidence 4678888887777776656555544555552 23577899999999997554 5779999888865
No 16
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=38.23 E-value=45 Score=24.68 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=28.7
Q ss_pred CceeEEeeCCCCCCHHHHHHHHHHHHHHHH-HhCccc
Q 043020 233 VPLLEIVSEPDMRTGLEAAEYAAELQRLVR-YLGVSN 268 (564)
Q Consensus 233 vPLiEIVTePd~~s~~EA~~~~~~L~~ilr-~lgvs~ 268 (564)
||+|+|-+-+- +|.++-.+++++|-..+. .+|+..
T Consensus 1 MP~i~i~~~~g-~s~eqk~~l~~~lt~~l~~~lg~~~ 36 (64)
T 3abf_A 1 MVVLKVTLLEG-RPPEKKRELVRRLTEMASRLLGEPY 36 (64)
T ss_dssp CEEEEEEEETT-CCHHHHHHHHHHHHHHHHHHTTCCG
T ss_pred CCEEEEEECCC-CCHHHHHHHHHHHHHHHHHHhCCCc
Confidence 79999987665 799999999999977776 477764
No 17
>3mix_A Flagellar biosynthesis protein FLHA; flagella biosynthesis, protein transport, type III secretion; 2.30A {Bacillus subtilis}
Probab=35.75 E-value=1.3e+02 Score=31.58 Aligned_cols=92 Identities=15% Similarity=0.239 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHcCccchHHHHHHHHHHHHcCCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhChHHHHHhhcCcc--
Q 043020 452 LSAAELAELIASIKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKT-- 529 (564)
Q Consensus 452 ispe~LaeLI~li~~g~IS~k~AK~il~~ll~~~~~~~~IIee~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk~Gk~-- 529 (564)
++...+.+++..+-...||-+.-+.||+.+.+.+ . .-.|.+.|.+-|+..|... .+.+|..+..
T Consensus 218 l~l~~i~~VLq~LL~E~VsIRdlrtIlEaLae~a-----------~-~~kD~~~LtE~VR~aL~R~--I~~~~~~~~~~L 283 (382)
T 3mix_A 218 LSVGDIQKVLAKLLKEKVSIRNLVTIFETLADYG-----------K-LTTDSDLLTEYTRQALAKQ--ITAQFAKENEVL 283 (382)
T ss_dssp CCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHT-----------T-TCCCHHHHHHHHHHHTHHH--HHHHHCCTTSCE
T ss_pred CCHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHh-----------c-ccCCHHHHHHHHHHHHHHH--HHHHhccCCCee
Confidence 6677777777777777777777777777765432 1 1246777777777777643 5566654332
Q ss_pred -------chhhHHHhHHhhhc-CC---CCChHHHHHHHHH
Q 043020 530 -------KLQGFFAGQVMKIS-KG---KANPGLLNKILLE 558 (564)
Q Consensus 530 -------k~~gflmGqVMk~t-kG---kAdPk~V~~il~e 558 (564)
..-..|.+. ++.+ .| -.||...++++.+
T Consensus 284 ~vi~L~p~lE~~l~~s-i~~~~~g~~laL~P~~~~~l~~~ 322 (382)
T 3mix_A 284 KVVTCSGRVEKAIADG-VQQTEHGNYLSLEPDISESIVRS 322 (382)
T ss_dssp ECBEECHHHHHHHHHH-BC------CBCCCHHHHHHHHHH
T ss_pred EEEEeCHHHHHHHHHH-hhccCCCCccCCCHHHHHHHHHH
Confidence 233444444 3444 34 3688888877654
No 18
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.40 E-value=64 Score=26.52 Aligned_cols=39 Identities=21% Similarity=0.305 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHcCCCHHHHHHHHhChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043020 384 LPEMKRRRYEEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMG 434 (564)
Q Consensus 384 lP~~~~~Rl~~ygLs~~dA~~L~~d~~la~yFE~~v~~~~~pk~vaNWi~~ 434 (564)
..++..++|.++|++...|..-+. ..+.+...|++||++
T Consensus 28 ~~e~~i~~L~~MGF~~~~a~~AL~------------~t~~nve~A~ewL~~ 66 (83)
T 2dai_A 28 VDEAALRQLTEMGFPENRATKALQ------------LNHMSVPQAMEWLIE 66 (83)
T ss_dssp CCHHHHHHHHHHTCCHHHHHHHHH------------HTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHH------------HhCCCHHHHHHHHHH
Confidence 456677888999999988854321 224678899999975
No 19
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=35.06 E-value=60 Score=25.22 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=27.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043020 385 PEMKRRRYEEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMG 434 (564)
Q Consensus 385 P~~~~~Rl~~ygLs~~dA~~L~~d~~la~yFE~~v~~~~~pk~vaNWi~~ 434 (564)
.++..++|.++|++..+|..-+ .....|...|++||+.
T Consensus 9 ~~~~I~~L~~MGF~~~~a~~AL------------~~~~~nve~A~e~L~~ 46 (63)
T 1wji_A 9 DEKALKHITEMGFSKEASRQAL------------MDNGNNLEAALNVLLT 46 (63)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHH------------HHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHH------------HHhCCCHHHHHHHHHH
Confidence 4566788889999998885321 1234578899999975
No 20
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.73 E-value=69 Score=25.67 Aligned_cols=41 Identities=27% Similarity=0.366 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHhChhhHHHHHHHHHhc-CCHHHHHHHHHH
Q 043020 382 PELPEMKRRRYEEMGLSMQDVLFLANDINVARFFDATIEKG-ADVKLAANWIMG 434 (564)
Q Consensus 382 PElP~~~~~Rl~~ygLs~~dA~~L~~d~~la~yFE~~v~~~-~~pk~vaNWi~~ 434 (564)
|+..++..++|.++|++...|..-+. ..+ .+...|++||+.
T Consensus 6 ~~~~e~~v~~L~~MGF~~~~a~~AL~------------~t~n~~ve~A~ewL~~ 47 (74)
T 2dag_A 6 SGLDESVIIQLVEMGFPMDACRKAVY------------YTGNSGAEAAMNWVMS 47 (74)
T ss_dssp CSSCHHHHHHHHHHSCCHHHHHHHHH------------HHTSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHH------------HhCCCCHHHHHHHHHh
Confidence 45567778889999999988864321 123 468899999975
No 21
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.69 E-value=67 Score=24.73 Aligned_cols=41 Identities=22% Similarity=0.312 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHcCCCHHHHHHHHhChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043020 383 ELPEMKRRRYEEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMGD 435 (564)
Q Consensus 383 ElP~~~~~Rl~~ygLs~~dA~~L~~d~~la~yFE~~v~~~~~pk~vaNWi~~e 435 (564)
+..++..++|.++|++...|..-+. ..+.+...|++||+.-
T Consensus 7 ~~~~~~v~~L~~MGF~~~~a~~AL~------------~t~~nve~A~e~L~~~ 47 (63)
T 2dak_A 7 GPPEDCVTTIVSMGFSRDQALKALR------------ATNNSLERAVDWIFSH 47 (63)
T ss_dssp CCCHHHHHHHHHHTCCHHHHHHHHH------------HTTSCSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHH------------HcCCCHHHHHHHHHhC
Confidence 3446677888899999988854321 2245788999999763
No 22
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=31.44 E-value=1.9e+02 Score=26.51 Aligned_cols=64 Identities=14% Similarity=0.245 Sum_probs=43.8
Q ss_pred cCCHHHHHHHHHHHHcCccchHHHHHHHHHH-------HHcCCCHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 043020 451 KLSAAELAELIASIKGATISGKIGKEILFEL-------MAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLS 515 (564)
Q Consensus 451 ~ispe~LaeLI~li~~g~IS~k~AK~il~~l-------l~~~~~~~~IIee~~l~qisD~~eL~~lV~eVi~ 515 (564)
.++++++.++|--+.+.-.+..+---+|.+- .-.|..+..|++++|+..-- ++.|..+|.+++.
T Consensus 29 ~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rILk~~glapei-PEDL~~LikKAv~ 99 (153)
T 2xzm_O 29 HMTPSTVVDLSVKLAKKGLTPSQIGVILRDQHGIPQVRFLTGQKILRILKKNGCAPQL-PEDLYFLIKKALS 99 (153)
T ss_dssp CCCHHHHHHHHHHHHHTTCCHHHHHHHHHHSSCCSCHHHHHSSCHHHHHHHTTCCCSS-CHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCCCHHHhhhHHhhcCCCCCeeeeccchHHHHHHHcCCCCCC-cHHHHHHHHHHHH
Confidence 3677787777766666555555444455441 13477899999999997544 5779888888766
No 23
>2x49_A INVA, invasion protein INVA; protein transport, transport, pathogenesis; 1.50A {Salmonella enterica subsp} PDB: 2x4a_A* 3lw9_A
Probab=29.37 E-value=2.5e+02 Score=28.66 Aligned_cols=94 Identities=9% Similarity=0.127 Sum_probs=61.5
Q ss_pred cCCHHHHHHHHHHHHcCccchHHHHHHHHHHHHcCCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhChHHHHHhhcCc-c
Q 043020 451 KLSAAELAELIASIKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGK-T 529 (564)
Q Consensus 451 ~ispe~LaeLI~li~~g~IS~k~AK~il~~ll~~~~~~~~IIee~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk~Gk-~ 529 (564)
.++...+.+++..+-...||-+.-+.|++.+.+.+ . .-.|.+.|.+-|+..|... .+.+|..+. -
T Consensus 171 ~l~l~~i~~VLq~LL~E~VsIRdl~tIlEaLae~a-----------~-~~kD~~~LtE~VR~aL~r~--I~~~~~~~~~L 236 (333)
T 2x49_A 171 HATVQRISEVLQRLLSERVSVRNMKLIMEALALWA-----------P-REKDVINLVEHIRGAMARY--ICHKFANGGEL 236 (333)
T ss_dssp TSCHHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHT-----------T-TCCCHHHHHHHHHHHTHHH--HHHHHHTTSCE
T ss_pred cCCHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHh-----------c-ccCCHHHHHHHHHHHHHHH--HHHHhCCCCCc
Confidence 36777888888888888888888888887776432 1 1246777888888777743 566776432 2
Q ss_pred c-------hhhHHHhHHhhhc-CC---CCChHHHHHHHHHH
Q 043020 530 K-------LQGFFAGQVMKIS-KG---KANPGLLNKILLEK 559 (564)
Q Consensus 530 k-------~~gflmGqVMk~t-kG---kAdPk~V~~il~e~ 559 (564)
+ ....|.+. ++++ .| -.||...++++.+.
T Consensus 237 ~vi~L~p~lE~~l~~~-i~~t~~G~~l~L~P~~~~~l~~~~ 276 (333)
T 2x49_A 237 RAVMVSAEVEDVIRKG-IRQTSGSTFLSLDPEASANLMDLI 276 (333)
T ss_dssp EEEECCHHHHHHHHHH-EEECSSCEEECCCHHHHHHHHHHH
T ss_pred eEEEeCHHHHHHHHHH-HhccCCCCcccCCHHHHHHHHHHH
Confidence 2 33455544 4444 45 35899888887653
No 24
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=27.52 E-value=1.1e+02 Score=25.08 Aligned_cols=42 Identities=29% Similarity=0.345 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHhChhhHHHHHHHHHhc-CCHHHHHHHHHH
Q 043020 381 LPELPEMKRRRYEEMGLSMQDVLFLANDINVARFFDATIEKG-ADVKLAANWIMG 434 (564)
Q Consensus 381 lPElP~~~~~Rl~~ygLs~~dA~~L~~d~~la~yFE~~v~~~-~~pk~vaNWi~~ 434 (564)
.+...++...+|.++|++...|...+ ...+ .+...|++||+.
T Consensus 25 ~~~~~e~~v~~L~~MGF~~~~a~~AL------------~~t~n~n~e~A~ewL~~ 67 (84)
T 1vek_A 25 QPVANEEIVAQLVSMGFSQLHCQKAA------------INTSNAGVEEAMNWLLS 67 (84)
T ss_dssp CCCCCHHHHHHHHHHTCCHHHHHHHH------------HHTTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHH------------HHHcCCCHHHHHHHHHh
Confidence 45556778888999999998875422 1222 478899999975
No 25
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=27.29 E-value=1.1e+02 Score=22.24 Aligned_cols=37 Identities=14% Similarity=0.140 Sum_probs=26.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043020 386 EMKRRRYEEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMG 434 (564)
Q Consensus 386 ~~~~~Rl~~ygLs~~dA~~L~~d~~la~yFE~~v~~~~~pk~vaNWi~~ 434 (564)
++..++|.++|++...|..-+. ..+.|+..|++||++
T Consensus 9 ~~~i~~L~~MGF~~~~a~~AL~------------~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 9 ETMLTEIMSMGYERERVVAALR------------ASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHH------------TTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHH------------HhCCCHHHHHHHHHh
Confidence 4567778899999998864332 224578889999875
No 26
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=26.13 E-value=80 Score=25.57 Aligned_cols=39 Identities=28% Similarity=0.391 Sum_probs=30.7
Q ss_pred ecCCCCceeEEeeCCCCCCHHHHHHHHHHHHHHHHHhCccc
Q 043020 228 LNRAGVPLLEIVSEPDMRTGLEAAEYAAELQRLVRYLGVSN 268 (564)
Q Consensus 228 ~NRaGvPLiEIVTePd~~s~~EA~~~~~~L~~ilr~lgvs~ 268 (564)
+-|||.-=+.|--.. .+-++|++.++-+-++|+.+|-.|
T Consensus 42 laragarnvqitisa--endeqakelleliarllqklgykd 80 (96)
T 2jvf_A 42 LARAGARNVQITISA--ENDEQAKELLELIARLLQKLGYKD 80 (96)
T ss_dssp HHHHTCSEEEEEEEC--SSHHHHHHHHHHHHHHHHHHTCSE
T ss_pred HHhccccceEEEEEe--cChHHHHHHHHHHHHHHHHhCCCc
Confidence 467887766665432 467999999999999999999764
No 27
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=25.72 E-value=1.4e+02 Score=22.60 Aligned_cols=40 Identities=15% Similarity=0.081 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHhChhhHHHHHHHHHhcCCHHHHHHHHH
Q 043020 382 PELPEMKRRRYEEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIM 433 (564)
Q Consensus 382 PElP~~~~~Rl~~ygLs~~dA~~L~~d~~la~yFE~~v~~~~~pk~vaNWi~ 433 (564)
|+-+++..++|.++|.+.++|..-+ .....|...++|.|.
T Consensus 8 ~~~~~~~Ia~Lm~mGFsr~~ai~AL------------~~a~nnve~AaniLl 47 (52)
T 2ooa_A 8 LENVDAKIAKLMGEGYAFEEVKRAL------------EIAQNNVEVARSILR 47 (52)
T ss_dssp ---CHHHHHHHHHTTCCHHHHHHHH------------HHTTTCHHHHHHHHH
T ss_pred CCChHHHHHHHHHcCCCHHHHHHHH------------HHhCCCHHHHHHHHH
Confidence 4456678899999999999987533 223456777777664
No 28
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=25.19 E-value=69 Score=24.88 Aligned_cols=38 Identities=16% Similarity=0.189 Sum_probs=26.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhChhhHHHHHHHHHh-cCCHHHHHHHHHH
Q 043020 385 PEMKRRRYEEMGLSMQDVLFLANDINVARFFDATIEK-GADVKLAANWIMG 434 (564)
Q Consensus 385 P~~~~~Rl~~ygLs~~dA~~L~~d~~la~yFE~~v~~-~~~pk~vaNWi~~ 434 (564)
+++..+.|.++|++...|..-+. .. ..++..|++||+.
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~------------~t~~~nve~A~ewLl~ 47 (64)
T 1whc_A 9 ELTALESLIEMGFPRGRAEKALA------------LTGNQGIEAAMDWLME 47 (64)
T ss_dssp CCCHHHHHHTTTCCHHHHHHHHH------------HHTSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHH------------HhcCCCHHHHHHHHHh
Confidence 34456778889999988864321 22 3679999999975
No 29
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=23.32 E-value=1.1e+02 Score=23.49 Aligned_cols=44 Identities=25% Similarity=0.252 Sum_probs=33.7
Q ss_pred CceeEEeeCCCCCCHHHHHHHHHHHHHHHH-HhCcccCCcCCCcccccccccccC
Q 043020 233 VPLLEIVSEPDMRTGLEAAEYAAELQRLVR-YLGVSNGNMQEGSLRCDVNVSIRP 286 (564)
Q Consensus 233 vPLiEIVTePd~~s~~EA~~~~~~L~~ilr-~lgvs~g~meeGslR~DvNVSv~~ 286 (564)
||+|+|-.-+. +|.++-+++++.|-..+. .+|+.. -|+.|.|..
T Consensus 1 MP~I~I~~~~g-rs~eqK~~L~~~it~~l~~~lg~p~---------~~v~V~i~e 45 (72)
T 3mb2_A 1 MLLLRITMLEG-RSTEQKAELARALSAAAAAAFDVPL---------AEVRLIIQE 45 (72)
T ss_dssp CEEEEEEEESC-CCHHHHHHHHHHHHHHHHHHHTCCG---------GGEEEEEEE
T ss_pred CCEEEEEEcCC-CCHHHHHHHHHHHHHHHHHHhCCCc---------ccEEEEEEE
Confidence 79999976554 899999999999977775 588774 355666654
No 30
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=23.18 E-value=1.8e+02 Score=22.19 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHhChhhHHHHHHHHHhcCCHHHHHHHHH
Q 043020 382 PELPEMKRRRYEEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIM 433 (564)
Q Consensus 382 PElP~~~~~Rl~~ygLs~~dA~~L~~d~~la~yFE~~v~~~~~pk~vaNWi~ 433 (564)
++.|++..++|.++|.+.++|..-+ .....|...++|.|.
T Consensus 6 ~~~~e~~I~~L~~lGF~r~~ai~AL------------~~a~nnve~Aa~iL~ 45 (53)
T 2d9s_A 6 SGQLSSEIERLMSQGYSYQDIQKAL------------VIAHNNIEMAKNILR 45 (53)
T ss_dssp CSCSHHHHHHHHHHTCCHHHHHHHH------------HHTTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHcCCCHHHHHHHH------------HHhcCCHHHHHHHHH
Confidence 4567788999999999999987532 233466777777664
No 31
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=22.78 E-value=1.1e+02 Score=26.69 Aligned_cols=42 Identities=12% Similarity=0.262 Sum_probs=32.0
Q ss_pred hChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCcc
Q 043020 407 NDINV-ARFFDATIEKGADVKLAANWIMGDIAAYMKNEKLTIN 448 (564)
Q Consensus 407 ~d~~l-a~yFE~~v~~~~~pk~vaNWi~~ell~~L~~~~~~i~ 448 (564)
+|-.+ ..+||.+-.++.+.+.+..|++.+|...|.+.|++..
T Consensus 59 ND~alAVR~lE~iK~K~~~~~~iY~~~lqElkPtl~ELGI~t~ 101 (109)
T 1v54_E 59 NDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTP 101 (109)
T ss_dssp TCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTCCCT
T ss_pred hhHHHHHHHHHHHHHHhcCchhhHHHHHHHHhhHHHHhCCCCH
Confidence 44333 4677777666666688899999999999999998743
No 32
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=21.58 E-value=1.6e+02 Score=21.11 Aligned_cols=36 Identities=11% Similarity=0.178 Sum_probs=29.4
Q ss_pred CCceeEEeeCCCCCCHHHHHHHHHHHHHHHH-HhCccc
Q 043020 232 GVPLLEIVSEPDMRTGLEAAEYAAELQRLVR-YLGVSN 268 (564)
Q Consensus 232 GvPLiEIVTePd~~s~~EA~~~~~~L~~ilr-~lgvs~ 268 (564)
.||+++|-+-+-. |+++-.++++.|...+. .+|+..
T Consensus 2 ~MP~i~i~~~~g~-s~e~k~~l~~~l~~~l~~~lg~p~ 38 (63)
T 2x4k_A 2 MMPIVNVKLLEGR-SDEQLKNLVSEVTDAVEKTTGANR 38 (63)
T ss_dssp CCCEEEEEEESCC-CHHHHHHHHHHHHHHHHHHHCCCG
T ss_pred CCCEEEEEEcCCC-CHHHHHHHHHHHHHHHHHHhCcCc
Confidence 4899999877654 99999999999977666 568775
No 33
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=21.19 E-value=1.1e+02 Score=27.97 Aligned_cols=37 Identities=8% Similarity=0.223 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCcc
Q 043020 412 ARFFDATIEKGADVKLAANWIMGDIAAYMKNEKLTIN 448 (564)
Q Consensus 412 a~yFE~~v~~~~~pk~vaNWi~~ell~~L~~~~~~i~ 448 (564)
..+||.+-.++.+.+.+..|++.||...|.+.|++..
T Consensus 108 VR~lE~vK~K~~~~~~iY~y~lqElkPtl~ELGI~t~ 144 (152)
T 2y69_E 108 VRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTP 144 (152)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHhhHHHHhCCCCH
Confidence 4677777667767788999999999999999998643
No 34
>2x49_A INVA, invasion protein INVA; protein transport, transport, pathogenesis; 1.50A {Salmonella enterica subsp} PDB: 2x4a_A* 3lw9_A
Probab=20.87 E-value=2.2e+02 Score=29.20 Aligned_cols=120 Identities=12% Similarity=0.092 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHhcCCCcccc-cCCHHHHHHHHHHHHcCccchHHHHHHHHHHHHcCCCHHHHHHhcCCCCCCCHHHH
Q 043020 428 AANWIMGDIAAYMKNEKLTINEI-KLSAAELAELIASIKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEI 506 (564)
Q Consensus 428 vaNWi~~ell~~L~~~~~~i~~~-~ispe~LaeLI~li~~g~IS~k~AK~il~~ll~~~~~~~~IIee~~l~qisD~~eL 506 (564)
-|-||-.+....+...|.++-+. .+=..||.++++.=...-++..-.|.+++.+ .++.-++++|. +.+++ -..|
T Consensus 103 ~a~WI~~~~~~~a~~~Gytvvd~~tViatHl~evi~~~a~ellg~qEvq~Lld~l---~~~~p~LveEl-p~~l~-l~~i 177 (333)
T 2x49_A 103 QYFWVTHEEGEKLRELGYVLRNALDELYHCLAVTLARNVNEYFGIQETKHMLDQL---EAKFPDLLKEV-LRHAT-VQRI 177 (333)
T ss_dssp EEEEECHHHHHHHHTTTCCEEEHHHHHHHHHHHHHHHTGGGTCSHHHHHHHHHHH---HTTCHHHHHHH-HTTSC-HHHH
T ss_pred CcEeeCcchHHHHHHCCCEEEcHHHHHHHHHHHHHHHhHHHHhCHHHHHHHHHHH---HHHChHHHHHH-hccCC-HHHH
Confidence 44577777666666666554332 2335688888877777777777788888777 33456788888 77777 7778
Q ss_pred HHHHHHHHHhChHHHHHhhcCccchhhHHHhHHhhhcCCCCChHHHHHHHHHHhh
Q 043020 507 EKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKISKGKANPGLLNKILLEKLN 561 (564)
Q Consensus 507 ~~lV~eVi~~np~~Ve~yk~Gk~k~~gflmGqVMk~tkGkAdPk~V~~il~e~L~ 561 (564)
.++.+..+++.- .-+.+--++--+.....---||..+.+-++..|+
T Consensus 178 ~~VLq~LL~E~V---------sIRdl~tIlEaLae~a~~~kD~~~LtE~VR~aL~ 223 (333)
T 2x49_A 178 SEVLQRLLSERV---------SVRNMKLIMEALALWAPREKDVINLVEHIRGAMA 223 (333)
T ss_dssp HHHHHHHHTTTC---------CCCCHHHHHHHHHHHTTTCCCHHHHHHHHHHHTH
T ss_pred HHHHHHHHhCCC---------CcccHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 888887777641 1233333333333322222477777777766664
Done!