RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 043020
(564 letters)
>3al0_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; protein-RNA
complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga
maritima}
Length = 482
Score = 810 bits (2095), Expect = 0.0
Identities = 218/494 (44%), Positives = 310/494 (62%), Gaps = 15/494 (3%)
Query: 72 EYEAIIGIETHVQLSTLTKAFCTCPYN-YGAQPNTSVCPICMGLPGALPVVNSKVVEFAV 130
Y +IG+E HVQLST TKAFC+CP + + PNT++CP+C G PGALPV N +++ FAV
Sbjct: 2 RYRPVIGLEIHVQLSTKTKAFCSCPADVFELPPNTAICPVCTGQPGALPVPNEEMIRFAV 61
Query: 131 KLGLALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRF 190
K LALNCK+ S+FDRK YFYPDLPKGYQISQ+ PIAT G+L++D G ++
Sbjct: 62 KTALALNCKIHKYSRFDRKNYFYPDLPKGYQISQYFYPIATEGFLEIDG----DEGRKKV 117
Query: 191 GITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNRAGVPLLEIVSEPDMRTGLEA 250
I R+H+EEDAGKL+H D + VD+NR GVPL+EIV+EPD+ + EA
Sbjct: 118 RIRRLHLEEDAGKLVHEGDSITRASYSL-------VDMNRCGVPLIEIVTEPDISSPREA 170
Query: 251 AEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINRA 310
+ +L+ +VRYLGVS G+M++G+LRCD N+S+ + +VE+KN+NSF + RA
Sbjct: 171 RVFMEKLRSIVRYLGVSTGDMEKGALRCDANISVVDTETGRQSNRVEVKNMNSFRFVERA 230
Query: 311 IDFEIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILN 370
+++E R +G+ + +ETR W+ ++ TV+MR KE +DYRYFPEPD+P V+L+
Sbjct: 231 LEYEFERIVKAMERGE--DVERETRGWDMATKITVSMRGKEEESDYRYFPEPDIPPVVLS 288
Query: 371 KEYVDSIQSSLPELPEMKRRRY-EEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAA 429
EY++ ++ LPELP+ K R+ E GL D L + +A FF+ ++ K +
Sbjct: 289 DEYLEEVKKELPELPDEKAERFMREYGLPEYDAKVLTSSKELAEFFEECVKVVNRPKDLS 348
Query: 430 NWIMGDIAAYMKNEKLTINEIKLSAAELAELIASIKGATISGKIGKEILFELMAKGGTVK 489
NWIM ++ + + I E KL+ A+L + IS KI KEI E+ G
Sbjct: 349 NWIMTEVLRELNERNIEITESKLTPQHFADLFKLMDEGKISIKIAKEIFPEVFETGKMPS 408
Query: 490 GIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKISKGKANP 549
I+ EK L QI D IE++V K + +NPK ++ Y+ GK K GFF G VM+ +KGKANP
Sbjct: 409 QIVEEKGLTQINDEKLIEELVKKAMEQNPKAVQDYKSGKKKAAGFFVGYVMRETKGKANP 468
Query: 550 GLLNKILLEKLNAK 563
L N+I+ + L +
Sbjct: 469 ELTNRIIQKLLEGE 482
>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi
protein complex, ligase, protein biosynthesis; HET: ADP;
2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B*
Length = 478
Score = 808 bits (2090), Expect = 0.0
Identities = 221/494 (44%), Positives = 334/494 (67%), Gaps = 19/494 (3%)
Query: 69 ISKEYEAIIGIETHVQLSTLTKAFCTCPYNYGAQPNTSVCPICMGLPGALPVVNSKVVEF 128
++++YEA+IG+E HVQ+ T TK FC C +GA+PNT+VCP+C+G+PGALP+VN + VE+
Sbjct: 1 MNEKYEAVIGLEIHVQMDTKTKMFCGCKVEFGAEPNTNVCPVCLGMPGALPIVNKRAVEY 60
Query: 129 AVKLGLALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHR 188
A++ LALNC++ S F RK YFYPDLPKGYQISQ++ P+AT G+++++LP G +
Sbjct: 61 AIRASLALNCEVHEESVFARKHYFYPDLPKGYQISQYEKPLATNGWVELNLP---NGEKK 117
Query: 189 RFGITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNRAGVPLLEIVSEPDMRTGL 248
+ I R+H+EEDAGK +H D VDLNRAG PL+EIV+EPD+RT
Sbjct: 118 KVRIRRLHIEEDAGKNIHEGDKTL-------------VDLNRAGTPLMEIVTEPDIRTPE 164
Query: 249 EAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSIN 308
EA + +L+ ++RY GVS +M++G LRCD+NVSIRP G +FGT+VEIKN+NSF +
Sbjct: 165 EARLFLEKLRNIMRYAGVSKADMEKGQLRCDINVSIRPKGSKEFGTRVEIKNVNSFRFVQ 224
Query: 309 RAIDFEIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVI 368
+A+++EI RQ + +G ++VQETR ++ + KT MR KE DYRYFP+PDL +
Sbjct: 225 KALEYEIERQINVVEEGG--EVVQETRTFDPQTGKTYPMRTKEEAEDYRYFPDPDLVPLK 282
Query: 369 LNKEYVDSIQSSLPELPEMKRRRY-EEMGLSMQDVLFLANDINVARFFDATIEKGADVKL 427
+ KE+++ I+ ++PELP+ + R +E GLS + L N V FF+ + + K
Sbjct: 283 VKKEWIEEIKKNMPELPDQRFERLIKEYGLSEYEAGILVNHKEVGDFFEEAVRHFKEPKG 342
Query: 428 AANWIMGDIAAYMKNEKLTINEIKLSAAELAELIASIKGATISGKIGKEILFELMAKGGT 487
NW++ D+ ++++ ++I E + LAEL+ IK IS KIGKE++ E++ G T
Sbjct: 343 IVNWLINDLLGLLRDKGISIEESPVKPEHLAELVKLIKEKVISTKIGKEVIKEMVETGKT 402
Query: 488 VKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKISKGKA 547
I+ EK L QI D ++I+++V K+ ++PK++E+ + G+ KL GFF GQVM+ ++GKA
Sbjct: 403 PSQIVEEKGLKQITDENQIKELVKKIFEKHPKEVERLKQGEEKLIGFFVGQVMRETRGKA 462
Query: 548 NPGLLNKILLEKLN 561
NP ++NK++ E +
Sbjct: 463 NPQVVNKVIRELVK 476
>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein
complex, ligase, ATP-binding, nucleotide-bindi protein
biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB:
2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B
Length = 483
Score = 808 bits (2089), Expect = 0.0
Identities = 219/493 (44%), Positives = 321/493 (65%), Gaps = 20/493 (4%)
Query: 72 EYEAIIGIETHVQLSTLTKAFCTCPYNYGAQPNTSVCPICMGLPGALPVVNSKVVEFAVK 131
+E +IG+E HV+L T +K F P ++GA+PN++ I + PG LPVVN + V++A++
Sbjct: 2 HFETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNKRAVDWAMR 61
Query: 132 LGLALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFG 191
+ALN +++ SKFDRK YFYPD PK YQISQFD PI GY+D+++ G +R G
Sbjct: 62 AAMALNMEIATESKFDRKNYFYPDNPKAYQISQFDQPIGENGYIDIEV----DGETKRIG 117
Query: 192 ITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNRAGVPLLEIVSEPDMRTGLEAA 251
ITR+HMEEDAGK H + VDLNR G PL+EIVSEPD+R+ EA
Sbjct: 118 ITRLHMEEDAGKSTHKGEYSL-------------VDLNRQGTPLIEIVSEPDIRSPKEAY 164
Query: 252 EYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINRAI 311
Y +L+ +++Y GVS+ M+EGSLRCD N+S+RP GQ KFGTK E+KNLNSF+ + + +
Sbjct: 165 AYLEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKGL 224
Query: 312 DFEIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILNK 371
++E RQ G +I QETR ++E + KT+ MR KEG DYRYFPEPD+ + ++
Sbjct: 225 EYEEKRQEEELLNGG--EIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDD 282
Query: 372 EYVDSIQSSLPELPEMKRRRY-EEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAAN 430
+ + ++ ++PELP+ ++ +Y E+GL D L ++ FF++TIE GADVKL +N
Sbjct: 283 AWKERVRQTIPELPDERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADVKLTSN 342
Query: 431 WIMGDIAAYMKNEKLTINEIKLSAAELAELIASIKGATISGKIGKEILFELMAKGGTVKG 490
W+MG + Y+ ++ + + KL+ LA +I I+ T+S KI K++ EL AKGG K
Sbjct: 343 WLMGGVNEYLNKNQVELLDTKLTPENLAGMIKLIEDGTMSSKIAKKVFPELAAKGGNAKQ 402
Query: 491 IIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKISKGKANPG 550
I+ + LVQI D + + K V++ L N + +E Y+ GK K GF GQ+MK SKG+ANP
Sbjct: 403 IMEDNGLVQISDEATLLKFVNEALDNNEQSVEDYKNGKGKAMGFLVGQIMKASKGQANPQ 462
Query: 551 LLNKILLEKLNAK 563
L+N++L ++L+ +
Sbjct: 463 LVNQLLKQELDKR 475
>3kfu_F Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; ASPRS, gatcab,
ATP-binding, aminoacyl-tRNA synthetase, ligas
nucleotide-binding, protein biosynthesis, ligase-RNA
comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Length = 466
Score = 686 bits (1774), Expect = 0.0
Identities = 185/416 (44%), Positives = 258/416 (62%), Gaps = 27/416 (6%)
Query: 73 YEAIIGIETHVQLSTLTKAFCTCPYNY-GAQPNTSVCPICMGLPGALPVVNSKVVEFAVK 131
YEA+IG+E H+ L T TK FC C +Y GA+PNT CP+C+GLPGALPV N VE ++
Sbjct: 2 YEAVIGLEVHLHLKTRTKMFCGCRADYFGAEPNTHTCPVCLGLPGALPVPNRVAVEHGLR 61
Query: 132 LGLALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFG 191
L LAL ++ F RK YFYPDLPK YQISQ+D+P+ GG L + G RR
Sbjct: 62 LALALGAEVPERLVFHRKNYFYPDLPKNYQISQYDLPLGRGGSLPL--------GERRVR 113
Query: 192 ITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNRAGVPLLEIVSEPDMRTGLEAA 251
I R+H+EEDAGK LH + +DLNRAG PL+E+V+EPD++T EA
Sbjct: 114 IKRLHLEEDAGKSLHLEGRTL-------------LDLNRAGSPLIELVTEPDLKTPEEAR 160
Query: 252 EYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINRAI 311
+ +Q LV+ LG+S+ + +EG LR DVNVS+R VG+ GTKVEIKNLNSF S+ RA+
Sbjct: 161 LFLQRIQALVQTLGISDASPEEGKLRADVNVSVRRVGE-PLGTKVEIKNLNSFKSVQRAL 219
Query: 312 DFEIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILNK 371
++EI RQ + +G+ ++ Q T +EEGS KT MR KE ADYRYFPEPDLP V + +
Sbjct: 220 EYEIRRQTEILRRGE--KVKQATMGFEEGSGKTYPMRTKEEEADYRYFPEPDLPPVAIPR 277
Query: 372 EYVDSIQSSLPELPEMKRRRYEEMGLSMQDVLFLANDINVARFFDATIEKG-ADVKLAAN 430
++++ ++ SLPELP K RY +G+ +D LA ++ARF D + G A + AN
Sbjct: 278 DWLEEVRRSLPELPWEKEARYRALGIKEKDAEVLAYTPSLARFLDQALPLGLASPQALAN 337
Query: 431 WIMGDIAAYMKNEKLTINEIKLSAAELAELIASIKGATISGKIGKEILFELMAKGG 486
W++ D+A + L + E +LS LA L+ + ++ ++ K + + +G
Sbjct: 338 WLLADVAGLLHERGLRLEETRLSPEGLARLVGLFERGEVTSRVAKSL-LPEVLEGQ 392
>1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure,
asparaginase 1 family, GATD subfamily, lyase; 3.00A
{Pyrococcus abyssi} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Length = 633
Score = 371 bits (954), Expect = e-122
Identities = 103/652 (15%), Positives = 190/652 (29%), Gaps = 195/652 (29%)
Query: 71 KEYEAIIGIETHVQLSTLTKAFCTCPYNYGAQPNTSV----------------------- 107
+E +G+E H QL T K F P + +
Sbjct: 11 EELGLKVGLEIHRQLDT-KKLFSPVPSELSDKVEFTFQRRLRPTMSELGEIDPAALEEFK 69
Query: 108 -----------CPICMGLPGALPV--VNSKVVEFAVKLGLALNCKLSFNSKFDRKQYFYP 154
+ P + + +E A+++ LN K + RK
Sbjct: 70 KGRVYVYEGNYELTDLVYMDEEPPRGPDREALEVALQIAYLLNAKPVDEVYYMRKIVIDG 129
Query: 155 DLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFGITRVHMEEDAGKLLHADDGEYSQ 214
G+Q + IAT G ++ GI + +EEDA +++ D E
Sbjct: 130 SNVSGFQRTAI---IATDGKVETP--------WGAVGIPTICLEEDAARIIERKDKEVI- 177
Query: 215 EITFPIIYALQVDLNRAGVPLLEIVSEPDMRTGLEAAEYAAELQRLVRYLGVSNGNMQEG 274
L+R G+PL+EI + PD+ +A A + +R G
Sbjct: 178 -----------YRLDRLGIPLIEISTTPDIHHPEQAKVVAKFIGDALRATKKV--KRGLG 224
Query: 275 SLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINRAIDFEIARQALLYSQGKADQIVQET 334
++R D+NVSI+ G ++EIK + I I+ E+ RQ L D++ +
Sbjct: 225 TIRQDLNVSIKG------GARIEIKGVQELDMIPIIIEREVERQLNLLKIR--DELRKRG 276
Query: 335 RLWEEG-------------SQKTVTMRKKEGLADYRYFPEPDL---------PEVILNKE 372
++ ++ + R + P P L E
Sbjct: 277 VKPKDIKEEFYDVTDIFENTKSKIIARVIKKGGKVLAIKLPKFRGLIGREIQPGRRLGTE 336
Query: 373 YVDSIQSSLPEL------PEMKRRRYEEMGLSMQ-DVLFLANDINVARFF----DATIEK 421
+ D + +P + P + E + + ++ + VA +A E
Sbjct: 337 FADRAKKYVPGIFHIDELPNYGISQEEVNKVIERLNLSEEDAFVLVAAEEEKAKNALREV 396
Query: 422 GADVKLAANWIMGDIAAYMKNEK-----------------------LTINEIKLSAAELA 458
+ A + + + + + + K L
Sbjct: 397 IKRAREAIEGVPEETRRALPDGNTEYMRPLPGKARMYPETDIPPLRIPDDLKKKIKENLP 456
Query: 459 ELIASIKG-------------ATISGKIGKEILFELMAKGGTVKGI-------------- 491
EL + T+ E+ EL++ G
Sbjct: 457 ELPQAKVERYVKEYKLDRSLAQTLVDDERDELFEELVSMGVKPSLAASILVVVLKGLRKE 516
Query: 492 -----IIEKDLVQIVD-------PSEIEKMVDKVLSENP-------------KQL----- 521
+ ++ + + E + + K L+ NP L
Sbjct: 517 VPIENVTDEHIREAFQLYLEGKIAKEAFEEIFKELARNPSKSAREVAEEKGLTLLSEEEV 576
Query: 522 ------------EQYRGGKTKLQGFFAGQVMKISKGKANPGLLNKILLEKLN 561
E + G G+VM +GKA+ L+++I+ KL
Sbjct: 577 TRIIEEVIQQNIEVVKAKGMGAMGLIMGRVMAKVRGKADGKLVSQIVRRKLQ 628
>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA
complex; 3.15A {Methanothermobacterthermautotrophicus}
SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Length = 619
Score = 360 bits (926), Expect = e-117
Identities = 87/551 (15%), Positives = 182/551 (33%), Gaps = 112/551 (20%)
Query: 72 EYEAI---IGIETHVQLSTLTKAFCTCPYNY-GAQPNTSV-------------------- 107
++E + +G+E H QL T +K FC C ++P+ +
Sbjct: 2 DWEKVGLKMGLEIHQQLDTESKLFCPCRTELTDSEPDHDIVRNLRPTQSELGKFDRAAFE 61
Query: 108 -----------------CPICMGLPGALPVVNSKVVEFAVKLGLALNCKLSFNSKFDRKQ 150
C + P+ N + +E AV + L LN ++ RKQ
Sbjct: 62 EAMRKLHFHYENYHEETCLVEADEEPPHPL-NPEALEIAVTIALLLNMRVVDEFHTMRKQ 120
Query: 151 YFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFGITRVHMEEDAGKLLHADDG 210
G+Q + +AT G+L+ I + +EEDA + + + G
Sbjct: 121 VIDGSNTGGFQRTGL---VATDGHLETP--------QGTVKIENLCLEEDAARRIR-ETG 168
Query: 211 EYSQEITFPIIYALQVDLNRAGVPLLEIVSEPDMRTGLEAAEYAAELQRLVRYLGVSNGN 270
+ L+R G+PL+EI ++P M + E A ++ +++R V
Sbjct: 169 DGV-----------VFRLDRLGIPLVEITTDPSMSDPQQLREVAYQIGQILRSTRVK--- 214
Query: 271 MQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINRAIDFEIARQALLYSQGKADQI 330
G++R D+N+SIR G +VE+K + I ++ E+ RQ L +
Sbjct: 215 RGLGTIRQDLNISIRD------GARVEVKGVQDLDLIPEIVEREVKRQLSLVEIRD--TL 266
Query: 331 VQETRLWEE---------GSQKTVTMRKKEGLADYRYFPEPDLPEVILNKEYVDSIQSSL 381
+ + E+ ++ + E + + L V +
Sbjct: 267 QERGAVVEDKIFDVSEVFADTESRIISSAESVLAVKLRGFDGLIGVEIQPGR-----RLG 321
Query: 382 PELPEMKRRRY-EEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMGDIAAYM 440
E+ + ++R + + + + + V DA D +
Sbjct: 322 TEMADYAKKRGVSGIFHTDELPAYGITEEEVRGLRDAVGASQGDAVVMVAH--------- 372
Query: 441 KNEKLTINEIKLSAAELAELIASIKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQI 500
N ++ I + T + + T + +E D+
Sbjct: 373 -ERVTAENALREVIRRAEMAIQGVPEETRKALPDGNT--QYLRPLPTSSRMYLETDIPLF 429
Query: 501 VDPSEIEKMVDKVLSENPKQLEQYRGGKTKL---------QGFFAGQVMKISKGKANPGL 551
++ + + + L E P + ++ L + + +++ + + +
Sbjct: 430 RIEDDLLEGIRRNLPELPSEKKERIMRDYGLSEDLASQLVKRNLVDEFEALTEFRVDTTV 489
Query: 552 LNKILLEKLNA 562
+ +L L
Sbjct: 490 IASLLAYTLRE 500
Score = 320 bits (822), Expect = e-102
Identities = 87/433 (20%), Positives = 169/433 (39%), Gaps = 41/433 (9%)
Query: 135 ALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFGITR 194
LN + ++ + K DL +I + ++ + L VE + G
Sbjct: 223 DLNISIRDGARVEVKGV--QDLDLIPEIVEREV------KRQLSL-VEIRDTLQERGAVV 273
Query: 195 VHMEEDAGKLLHADDGEY--SQEITFPIIYALQVDLNRAGVP-LLEIVSEPDMRTGLEAA 251
D ++ + S E + + G L+ + +P R G E A
Sbjct: 274 EDKIFDVSEVFADTESRIISSAESV--------LAVKLRGFDGLIGVEIQPGRRLGTEMA 325
Query: 252 EYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINRAI 311
+YA + R V + ++ G +V VG G V + ++ N
Sbjct: 326 DYAKK--RGVSGIFHTDELPAYGITEEEVRGLRDAVGA-SQGDAVVMVAHERVTAENAL- 381
Query: 312 DFEIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILNK 371
E+ R+A + QG + +ETR T + R + E D+P +
Sbjct: 382 -REVIRRAEMAIQG----VPEETRKALP---DGNTQYLRPLPTSSRMYLETDIPLFRIED 433
Query: 372 EYVDSIQSSLPELPEMKRRRY-EEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAAN 430
+ ++ I+ +LPELP K+ R + GLS L N+ F+A E D + A+
Sbjct: 434 DLLEGIRRNLPELPSEKKERIMRDYGLSEDLASQLVKR-NLVDEFEALTEFRVDTTVIAS 492
Query: 431 WIMGDIAAYMKNEKLTINEIKLSAAELAELIASIKGATISGKIGKEILFELMAKGGTVKG 490
+ ++ E ++ + EL + I ++ IS ++I+ + +G +
Sbjct: 493 L-LAYTLRELRREGHDVDGL--GLDELRDAIKLLEVGKISKDALRDIVACMADEGLAAED 549
Query: 491 IIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKISKGKANPG 550
+ +L+ + + EIE ++ +++ N + + G G GQ M +G+A+
Sbjct: 550 AARKLNLLLLAE-DEIESIIQEIVEGNLDMISERGMGAM---GPLMGQAMGRLRGRADGK 605
Query: 551 LLNKILLEKLNAK 563
++N+IL EK+ +
Sbjct: 606 VVNRILREKIQER 618
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 138 bits (349), Expect = 1e-34
Identities = 56/228 (24%), Positives = 100/228 (43%), Gaps = 12/228 (5%)
Query: 339 EGSQKTVTMRKKEGLADYRYFPEPDLPEVILNKEYVDSIQSSLPELPEMKRR------RY 392
+ K +++ R + P+ + + ++ P+ + R
Sbjct: 629 DTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTPEQDAEFTRL 688
Query: 393 EEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMGDIAAYMKNEKLTINEIKL 452
+G S D +A D + F ++A +W + ++ A ++ E+K+
Sbjct: 689 LGLGASEGDARTIARDPALLAFVGGAAPGDTFAQVA-SWTVNELVAGLRAG-----EVKV 742
Query: 453 SAAELAELIASIKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDK 512
AA+LA L + +S +I +E L A G II + L + ++++V +
Sbjct: 743 RAADLAPLAEGVASGQLSARIAREALARAAASGDAPLTIIEREGLNAGLSAEALQQVVAQ 802
Query: 513 VLSENPKQLEQYRGGKTKLQGFFAGQVMKISKGKANPGLLNKILLEKL 560
V++ NP + E YRGGKT L GFF GQVM+ + GKA+P L L + L
Sbjct: 803 VIAANPDKAEAYRGGKTALLGFFTGQVMRATAGKADPQALAAALKDAL 850
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 6e-08
Identities = 61/445 (13%), Positives = 131/445 (29%), Gaps = 152/445 (34%)
Query: 196 HMEEDAGKLLH--------------AD-DGEYSQEITFPIIYALQVDLNRAGVPLLEIVS 240
HM+ + G+ + + D + Q++ I+ ++D I+
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID---------HIIM 56
Query: 241 EPDMRTGLEAAEYAAELQRLVRYLGV--SNGNMQ-----EGSLRCDVN--------VSIR 285
D + +R S E LR + +
Sbjct: 57 SKD------------AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104
Query: 286 PVGQSK-FGTKVE-IKNLNS-FS--SINRAIDFEIARQALLYSQ-------------GK- 326
P ++ + + + + N N F+ +++R + RQALL + GK
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 327 --ADQIVQETRL---------W----EEGSQKTVTMRKKEGL---ADYRYFPEPDLPEVI 368
A + ++ W S +TV + + L D + D I
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV-LEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 369 LNKEYVDSIQSSLPELPEMKRRRYEEMGLSMQDVLFLANDINVARFFDA---TIEKGADV 425
K + SIQ+ L L +K + YE L + +V + F+ +
Sbjct: 224 --KLRIHSIQAELRRL--LKSKPYENCLLVLLNV----QNAKAWNAFNLSCKILLTTRFK 275
Query: 426 KLAANWIMGDIAAYMKNEKLTINEIK--LSAAELAELIASIKGATISGKIGKEILFELMA 483
++ D + ++++ L+ E+ L+
Sbjct: 276 QVT------DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD----------------- 312
Query: 484 KGGTVKGIIIEKDLVQIVDPSEIEK-------MVDKVLSENPKQLEQYRG-GKTKLQGFF 535
+DL P E+ ++ + + + + ++ KL
Sbjct: 313 --------CRPQDL-----PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT--- 356
Query: 536 AGQVMKISKGKANPGLLNKILLEKL 560
+++ S P K + ++L
Sbjct: 357 --TIIESSLNVLEPAEYRK-MFDRL 378
Score = 44.5 bits (104), Expect = 8e-05
Identities = 54/349 (15%), Positives = 107/349 (30%), Gaps = 106/349 (30%)
Query: 122 NSKVVEFAVKLGLALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPV 181
++V+ V+ L +N K S + + P + I Q D + + V
Sbjct: 75 QEEMVQKFVEEVLRINYKF-LMSPI-KTEQRQPSMMTRMYIEQRD-RLYNDNQVFAKYNV 131
Query: 182 EYGGGHRRFGIT--RVHMEED-------------AGK-LLHAD---DGEYSQEITFPIIY 222
R R + E +GK + D + ++ F I +
Sbjct: 132 S-----RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 223 ALQVDLNRAGVP--LLEIVSEPDMRTGLEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDV 280
++L P +LE+ LQ+L+ + + R D
Sbjct: 187 ---LNLKNCNSPETVLEM------------------LQKLLYQI------DPNWTSRSDH 219
Query: 281 NVSIRPVGQSKFGTKVEIKNLNSFSSINRA---ID----------FEIARQALLYSQGK- 326
+ +I+ + E++ L + F ++ + LL ++ K
Sbjct: 220 SSNIK---LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 327 -ADQIV--QETRLWEEGSQKTVTMRKKEGL-ADYRYFPEPDLPEVIL------------- 369
D + T + + T+T + + L Y DLP +L
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 370 ---------NKEYVDS------IQSSLPEL-PEMKRRRYEEMGLSMQDV 402
N ++V+ I+SSL L P R+ ++ + +
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Score = 44.5 bits (104), Expect = 9e-05
Identities = 76/535 (14%), Positives = 154/535 (28%), Gaps = 154/535 (28%)
Query: 21 LLRRNNGAFYCSMKSTHTQTATQEKQQ------------PPPKIKSSPQG-NQAKTRTLD 67
+ + F+ ++K+ ++ E Q + + + L
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE-LR 235
Query: 68 RI--SKEYE-AIIGIETHVQLSTLTKAFCTCPYNYGAQPNTSVCPICMGLPGALPVVNSK 124
R+ SK YE ++ + +VQ + AF N C I ++ ++
Sbjct: 236 RLLKSKPYENCLL-VLLNVQNAKAWNAF-----NLS-------CKI---------LLTTR 273
Query: 125 VVEFAVKLGLALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYG 184
+ L A +S + PD K + D DLP E
Sbjct: 274 FKQVTDFLSAATTTHISLD---HHSMTLTPDEVKSLLLKYLDCRPQ-------DLPREVL 323
Query: 185 GGHRRFGITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNRAGVPLLEIVSEPDM 244
+ + E ++ V+ ++ L I +
Sbjct: 324 TTN---------------PRRLSIIAESIRDGLATWDNWKHVNCDK----LTTI-----I 359
Query: 245 RTGLEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKV-EIKNLNS 303
+ L E AE +++ L V ++ T + + +
Sbjct: 360 ESSLNVLE-PAEYRKMFDRLSV---------FPPSAHIP----------TILLSLIWFDV 399
Query: 304 FSSINRAIDFEIARQALLYSQGKADQ-----IVQETRLWEEGSQKTVTMRKK--EGLADY 356
S + ++ + +L+ Q K I E ++ E + + +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY---ALHRSIVDHYNIP 456
Query: 357 RYFPEPDLPEVILNKEYVDS-IQSSLPELPEMKRRRYEEMGLSMQDVLFLANDINVARFF 415
+ F DL Y+D S + +K + E + +FL D RF
Sbjct: 457 KTFDSDDLI-----PPYLDQYFYSHIGH--HLKNIEHPERMTLFRM-VFL--DF---RFL 503
Query: 416 DATIEKGADVKLAANWI---MGDIAAYMKNEKLTINEIKLSAAELAELIASIKGATISGK 472
+ I + A+ I + + Y I + + L+ +I
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPY-------ICDNDPKYERLVNAIL------- 549
Query: 473 IGKEILFELMAKGGTVKGIIIEK--DLVQIV--DPSEIEKMVDKVLSENPKQLEQ 523
+ + K +I K DL++I E + E KQ+++
Sbjct: 550 -------DFLPKIEEN--LICSKYTDLLRIALMAEDE------AIFEEAHKQVQR 589
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 3e-06
Identities = 90/608 (14%), Positives = 166/608 (27%), Gaps = 240/608 (39%)
Query: 11 SHSFLLCPTTL------LRRNNGAFYCSMKSTHTQTATQEKQQPPPKIKSSP-------- 56
H L+ PT L+ F K T P ++P
Sbjct: 17 EHVLLV-PTASFFIASQLQEQ---FN---KILPEPTEGFAADDEP----TTPAELVGKFL 65
Query: 57 --------QGNQAKTRTLDRIS-KEYEAII--GIETHVQLSTL----------TKAFCTC 95
+ + + E+E G + H + L TK
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN 125
Query: 96 PYNYGAQPNTSVCPICMGLPGAL-PVVNSKVVE-FAVKLGLALNCKLSF----NSK--FD 147
Y A+ + P AL V + A+ F N+ F+
Sbjct: 126 -Y-ITAR-IMAKRPFDKKSNSALFRAVGEGNAQLVAI-----------FGGQGNTDDYFE 171
Query: 148 --RKQY-FYPDLPKGY--QISQFDIPIATGGYLDVDLPVEYGGGHRRFGITRVHMEEDAG 202
R Y Y L ++ + +D + G I
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIRT---TLDAEKVFTQG---LNILEW------- 218
Query: 203 KLLHAD---DGEY--SQEITFPIIYALQVDLNRAGVPLLEIVSEPDMRTGLEAAEYAAEL 257
L + D +Y S I+ P+I +Q A Y
Sbjct: 219 -LENPSNTPDKDYLLSIPISCPLIGVIQ------------------------LAHYVV-- 251
Query: 258 QRLVRYLGVSNGNMQE---GSLRC--DVNVSIRPVGQSKFGTKVEIKNLNSFSSINRAID 312
+ LG + G ++ G+ + V+ + ++ + SF
Sbjct: 252 --TAKLLGFTPGELRSYLKGATGHSQGL-VTAVAIAET--------DSWESF-------- 292
Query: 313 FEIARQAL--LYSQG-KADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEP-----DL 364
F R+A+ L+ G + + T L + ++ EG+ P P +L
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN--EGV------PSPMLSISNL 344
Query: 365 PEVILNKEYVDSIQSSLPELPEMKRRRYEEMGLSMQDVLFLANDINVAR-F--------- 414
+ + YV+ S LP + ++ +N A+
Sbjct: 345 TQEQVQD-YVNKTNSHLPA----------------GKQVEISL-VNGAKNLVVSGPPQSL 386
Query: 415 --FDATIEK-----GADV--------KLAANWIMGDIAA-----YMK------NEKLTIN 448
+ T+ K G D KL + +A+ + N+ L N
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKN 446
Query: 449 EIKLSAAELAELIASIKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEK 508
+ +A ++ I +++ T G DL +++ S E+
Sbjct: 447 NVSFNAKDIQ--IP---------------VYD------TFDG----SDL-RVLSGSISER 478
Query: 509 MVDKVLSE 516
+VD ++
Sbjct: 479 IVDCIIRL 486
Score = 45.4 bits (107), Expect = 5e-05
Identities = 48/300 (16%), Positives = 84/300 (28%), Gaps = 119/300 (39%)
Query: 340 GSQKTVTMRKKEGLADYRYFPEPDLPEVILNKEYVDSIQSSLPELPEMKRRRYEEMGLSM 399
GSQ+ M G+ Y+ ++ + + G S+
Sbjct: 1625 GSQE-QGM----GMDLYKTSK------AA--QDVWN----------RADNHFKDTYGFSI 1661
Query: 400 QDVLFLANDINVARFFDA-------------TIEKGADVKLAANWIMGDI----AAYM-- 440
D++ + N +N+ F E D KL I +I +Y
Sbjct: 1662 LDIV-INNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Query: 441 -KNEKL--TIN-EIKLSAAELAELIASIKGATISGKIGKEILF------E---LMAKGGT 487
+ L T + L+ E A +K G I + F E L +
Sbjct: 1721 SEKGLLSATQFTQPALTLMEKA-AFEDLKSK---GLIPADATFAGHSLGEYAALASLADV 1776
Query: 488 VKGIIIEKDLVQIV--------------------------DPSEI---------EKMVDK 512
+ IE LV++V +P + + +V++
Sbjct: 1777 ---MSIE-SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVER 1832
Query: 513 VLSENPKQLE---------QY-RGGKTK-LQGFFAGQVMKISKGKANPGLLNKILLEKLN 561
V +E QY G + L V+ K + KI + +L
Sbjct: 1833 VGKRTGWLVEIVNYNVENQQYVAAGDLRALDT--VTNVLNFIKLQ-------KIDIIELQ 1883
Score = 43.9 bits (103), Expect = 1e-04
Identities = 74/463 (15%), Positives = 135/463 (29%), Gaps = 186/463 (40%)
Query: 204 LLHADDGEYSQEITFPI-----IYALQVDLNRAGVPLLE--IVSEPDMRTGLEAAEY--- 253
L H S E + A Q L E P+ G A +
Sbjct: 11 LSHG-----SLEHVLLVPTASFFIASQ---------LQEQFNKILPEPTEGFAADDEPTT 56
Query: 254 AAELQRLVRYLGVSNGNMQEGS-----------LRC---------DVN---VSIRPVGQS 290
AEL + ++LG + ++ L D++ + +
Sbjct: 57 PAEL--VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT 114
Query: 291 KFGTKVE-IKN-LNSFSSINRAID-------FEIAR--QALLYS----QGKADQIVQETR 335
E IKN + + R D F A L + QG D +E R
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR 174
Query: 336 -LWE----------EGSQKTVTMRKKEGLADYRYFPEP-DL------PEVILNKEYVDSI 377
L++ + S +T++ + L + F + ++ P +K+Y+ SI
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI 234
Query: 378 QSSLPELPEMKRRRYEEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMGDIA 437
S P + G+ +Q LA+ + A+ + G++
Sbjct: 235 PISCPLI-----------GV-IQ----LAHYVVTAK--------------LLGFTPGELR 264
Query: 438 AYMKNEKLTINEIKLSAAELAE-------LIASIKGATISGKIGKE-------------I 477
+Y+K + ++A +AE ++ K T+ IG I
Sbjct: 265 SYLKGATGHSQGL-VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI 323
Query: 478 LFELMAKG-GT------VKGIIIEKDLVQIVDPSEIEKMVDK------------------ 512
L + + G + + +++ V+K
Sbjct: 324 LEDSLENNEGVPSPMLSISNL----------TQEQVQDYVNKTNSHLPAGKQVEISLVNG 373
Query: 513 ----VLSENPKQLEQYRGGKTKLQGFFAGQVMKISKGKANPGL 551
V+S P+ L G + + K KA GL
Sbjct: 374 AKNLVVSGPPQSLY--------------GLNLTLRKAKAPSGL 402
Score = 43.9 bits (103), Expect = 2e-04
Identities = 46/258 (17%), Positives = 69/258 (26%), Gaps = 88/258 (34%)
Query: 100 GAQ-PNTSVCPICMGLPGAL----PVVNSKVVEFA-----VKLGLALNCKLSFNSKFDRK 149
G+Q MG+ L V A G ++ + N
Sbjct: 1625 GSQEQG-------MGM--DLYKTSKAAQ-DVWNRADNHFKDTYGFSILDIVINNPV---N 1671
Query: 150 QYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFGITRVHMEEDAGKLLHADD 209
+ KG +I + + +D L E T + G L
Sbjct: 1672 LTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL---SA 1728
Query: 210 GEYSQEITFPIIYALQV----DLNRAGVPLLEIVSEPDMRTG--LEAAEYAA-------- 255
+++Q P + ++ DL G ++ G L EYAA
Sbjct: 1729 TQFTQ----PALTLMEKAAFEDLKSKG-----LIPADATFAGHSL--GEYAALASLADVM 1777
Query: 256 ---ELQRLVRY-------------LGVSNGNMQEGSLRCDVNVS--------------IR 285
L +V Y LG SN M +N +
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVPRDELGRSNYGM------IAINPGRVAASFSQEALQYVVE 1831
Query: 286 PVGQSKFGTKVEIKNLNS 303
VG+ G VEI N N
Sbjct: 1832 RVGKRT-GWLVEIVNYNV 1848
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.087
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 441 KNE--KLTINEIKLSAAELAELIASIKGATI 469
K KL +KL A + A +A IK AT+
Sbjct: 19 KQALKKLQ-ASLKLYADDSAPALA-IK-ATM 46
Score = 28.8 bits (63), Expect = 2.6
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 31/55 (56%)
Query: 371 KEYVDSIQSSL----PE-LPEMKRRRYEEMGLSMQDVLFLANDINVARFFDATIE 420
K+ + +Q+SL + P LA I AT+E
Sbjct: 19 KQALKKLQASLKLYADDSAPA------------------LA--IK------ATME 47
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 32.9 bits (75), Expect = 0.31
Identities = 53/344 (15%), Positives = 96/344 (27%), Gaps = 122/344 (35%)
Query: 234 PLLEIVSEPDMRTGLEAAEYAAELQRLVRYLGVS-----------NGNMQEGSLRCDVNV 282
+ E + + +RT E A L L+ V NG +Q +
Sbjct: 684 IIAEGIEKMGVRT-FSQKEMAFNLLGLLTPEVVELCQKSPVMADLNGGLQFVPELKEFTA 742
Query: 283 SIRPVGQSKFGTKVEIKNLNSFSSINRAIDFEIARQALLYSQGKADQIVQETRLWEEGSQ 342
+R K L S + +A+ E A + + + A + +
Sbjct: 743 KLR-------------KELVETSEVRKAVSIETALEHKVVNGNSA-----------DAAY 778
Query: 343 KTVTMRKKEGLADYRYFPEPDLPEVILNKEYVDSIQSSLPELPEMK-------------- 388
V ++ + + P+L Y Q + EL +
Sbjct: 779 AQVEIQPRANIQ----LDFPELKP------YKQVKQIAPAELEGLLDLERVIVVTGFAEV 828
Query: 389 --------RRRYEEMG-LSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMGDIAAY 439
R E G S++ + +A WIMG I
Sbjct: 829 GPWGSARTRWEMEAFGEFSLEGCVEMA------------------------WIMGFI--- 861
Query: 440 MKNEKLTINEIKLSA---AELAELIASIKGATISGKIGKEILFELMAKGGTVKGI-IIEK 495
+ + ++ E + + K IL + GI +IE
Sbjct: 862 -SYHNGNLKGRPYTGWVDSKTKEPVDD---KDVKAKYETSIL------EHS--GIRLIEP 909
Query: 496 DLVQIVDPSEIEKM----VDKVLS------ENPKQLEQYRGGKT 529
+L +P + E + V++ L E +Q + G K
Sbjct: 910 ELFNGYNPEKKEMIQEVIVEEDLEPFEASKETAEQFKHQHGDKV 953
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 32.5 bits (75), Expect = 0.34
Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 5/63 (7%)
Query: 454 AAELAELIASIKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKV 513
E A A I + E L + KG V G + E EK++ V
Sbjct: 31 VEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSV-----CDASLRPEREKLMQTV 85
Query: 514 LSE 516
S
Sbjct: 86 SSM 88
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural
genomics, joint center for structural JCSG, protein
structure initiative, PSI-2; HET: MSE; 1.54A
{Mesorhizobium loti}
Length = 211
Score = 30.4 bits (69), Expect = 1.1
Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 15/105 (14%)
Query: 366 EVILNKEYVD---SIQSSLPELPEMKRRRYEEMGLSMQDVLFLANDINVARFFDATIEKG 422
V++++E + I ++ +P++ R YE+ M A F +G
Sbjct: 101 AVLMDEELLKLRRLIIANADRMPQLGRAWYEKGFERMLAST--------ASCFQKLTNRG 152
Query: 423 ----ADVKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELIAS 463
D LAA+ + G + NE + + S AEL +
Sbjct: 153 LIQTGDPYLAASHLFGMLLWIPMNEAMFTGSNRRSKAELERHADA 197
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 30.6 bits (70), Expect = 1.1
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 454 AAELAELIASIKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKV 513
ELA L A + + + K E L KG V+G + ++ +E +K++ V
Sbjct: 38 VEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSV-----CDLLSRTERDKLMQTV 92
Query: 514 LSE 516
Sbjct: 93 AHV 95
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 30.1 bits (69), Expect = 1.7
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 454 AAELAELIASIKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKV 513
ELA L AS+ + + K + L + +KG V+ + + SE +++++ V
Sbjct: 26 VEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASV-----CDLSSRSERQELMNTV 80
Query: 514 LSE 516
+
Sbjct: 81 ANH 83
>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A;
CO-expressed complex, hetero-tetramer, structural
genomics, PSI-2; 2.59A {Bacillus subtilis}
Length = 241
Score = 29.6 bits (67), Expect = 2.4
Identities = 26/127 (20%), Positives = 53/127 (41%), Gaps = 24/127 (18%)
Query: 447 INEIKLSAAELAELIASIKGATIS----GKIG--KEILFELMAKGGTVKGIII------- 493
+ ++ S+ E A+LI G T+ G G ++++ + +G VK + +
Sbjct: 4 MGKVLSSSKEAAKLIHD--GDTLIAGGFGLCGIPEQLILSIRDQG--VKDLTVVSNNCGV 59
Query: 494 -EKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKL----QGFFAGQVMKISKGKAN 548
+ L ++ +I+KM+ + EN Q+ G+ ++ QG A ++ G
Sbjct: 60 DDWGLGLLLANKQIKKMIASYVGENKIFERQFLSGELEVELVPQGTLAERIRAGGAGI-- 117
Query: 549 PGLLNKI 555
PG
Sbjct: 118 PGFYTAT 124
>1jw3_A Conserved hypothetical protein MTH1598; structural genomics,
protein structure initiative, OCSP, NESG; NMR
{Methanothermobacterthermautotrophicus} SCOP: d.208.1.1
Length = 140
Score = 28.0 bits (62), Expect = 5.1
Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 13/104 (12%)
Query: 379 SSLPELPEMKRRRYEEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMGDIAA 438
L E+ +E L+M +V+ + + A I V L +W + ++
Sbjct: 20 HDLEEV-------FENAALAMFEVMTDTSLVEAAEERRVEITSEDRVSLLYDW-LDELLF 71
Query: 439 YMKNEKLTINEIKLSAAELAE---LIASIKGATISGKI--GKEI 477
E + ++ K+ E + L + G I E+
Sbjct: 72 IHDTEFILFSKFKVKIDEKDDGLHLTGTAMGEEIKEGHERRDEV 115
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding,
tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate
aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB:
3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A
Length = 332
Score = 28.7 bits (63), Expect = 5.8
Identities = 17/100 (17%), Positives = 27/100 (27%), Gaps = 11/100 (11%)
Query: 168 PIATGGYLDVDLPVEYGGGHRRFGITRVHMEEDAGKLL---HADDGEYSQEITFPIIYAL 224
T L L + G DA K L D I +
Sbjct: 100 DANTTSRLPDCLVDWSIKRLKEAG-------ADAVKFLLYYDVDGDPQVNVQKQAYIERI 152
Query: 225 QVDLNRAGVP-LLEIVSEPDMRTGLEAAEYAAELQRLVRY 263
+ +P LEI++ + + + E+A V
Sbjct: 153 GSECQAEDIPFFLEILTYDETISNNSSVEFAKVKVHKVND 192
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 28.3 bits (64), Expect = 5.9
Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 454 AAELAELIASIKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKV 513
A LA+ ++ + + + K ++ E+ + G G + EI ++++K+
Sbjct: 61 AKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYA-----GDVSKKEEISEVINKI 115
Query: 514 LSE 516
L+E
Sbjct: 116 LTE 118
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 28.3 bits (64), Expect = 6.2
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 454 AAELAELIASIKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKV 513
A+ A+ A+I I+ ++ + A G G + + + D I+ MV ++
Sbjct: 51 ASAYAKAGATIVFNDINQELVDRGMAAYKAAGINAHGYVCD-----VTDEDGIQAMVAQI 105
Query: 514 LSE 516
SE
Sbjct: 106 ESE 108
>3ddj_A CBS domain-containing protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP:
d.37.1.1 d.37.1.1
Length = 296
Score = 28.2 bits (63), Expect = 6.3
Identities = 5/35 (14%), Positives = 12/35 (34%)
Query: 484 KGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENP 518
GI+ E++ + + + V +S
Sbjct: 132 INDKPVGIVTEREFLLLYKDLDEIFPVKVFMSTKV 166
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 28.3 bits (64), Expect = 6.5
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 454 AAELAELIASIKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKV 513
A LA A++ A I+ + + + +++A GGT + V + DP + M D+
Sbjct: 26 AEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVA-----VDVSDPESAKAMADRT 80
Query: 514 LSE 516
L+E
Sbjct: 81 LAE 83
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 27.9 bits (63), Expect = 7.6
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 454 AAELAELIASIKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKV 513
A A+ AS+ + + + + + GG G+ + D E ++
Sbjct: 29 AGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLE-----CNVTDEQHREAVIKAA 83
Query: 514 LSE 516
L +
Sbjct: 84 LDQ 86
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 28.0 bits (63), Expect = 8.5
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 5/63 (7%)
Query: 454 AAELAELIASIKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKV 513
A L + + + + L EL G G + EIE +V V
Sbjct: 39 ARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRT-----CDVRSVPEIEALVAAV 93
Query: 514 LSE 516
+
Sbjct: 94 VER 96
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA
replication, DNA-BI DNA-directed DNA polymerase,
exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A
{Saccharomyces cerevisiae}
Length = 919
Score = 28.4 bits (63), Expect = 8.7
Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 26/94 (27%)
Query: 95 CPYNYGAQPNTSVCPICM-------------------GLPGALPVVNSKVVEFAVKLGLA 135
C G P P+ L P+ S + A + +
Sbjct: 258 CAGRIGVFPEPEYDPVIQIANVVSIAGAKKPFIRNVFTLNTCSPITGSMIFSHATEEEM- 316
Query: 136 LNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPI 169
L+ +F K D PD+ GY + FDIP
Sbjct: 317 LSNWRNFIIKVD------PDVIIGYNTTNFDIPY 344
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding
Pro RNA complex; 2.60A {Thermus thermophilus} PDB:
3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A
3hjf_A
Length = 685
Score = 28.0 bits (62), Expect = 9.0
Identities = 14/100 (14%), Positives = 25/100 (25%), Gaps = 13/100 (13%)
Query: 476 EILFELMAKGGTVKGIIIEKDLVQIVDPSEIE-KMVDKVLSENPKQL----------EQY 524
E L + + G + + + + + E Q E
Sbjct: 359 EFLRRALLRAFGASGASLRLHTLHAHPSQGLAFREALRKAKEEGVQAVLVLTPPMAWEDR 418
Query: 525 RGGKTKLQGF-FAGQVMKISKGKANPGLLNKILLEKLNAK 563
K L Q++ + + LL L AK
Sbjct: 419 NRLKALLLREGLPSQILNVPLREEERHRWENALL-GLLAK 457
>1ng6_A Hypothetical protein YQEY; structural genomics, domain GATB/YQEY,
PFAM02637, DUF186, PSI, protein structure initiative;
1.40A {Bacillus subtilis} SCOP: a.182.1.1
Length = 148
Score = 27.2 bits (61), Expect = 9.6
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 15/74 (20%)
Query: 492 IIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKI----SKGKA 547
I+E L + + E+ +V++ ++E G + G+VM KGKA
Sbjct: 86 ILEVYLPEQLSEEELRTIVNETIAEV---------GASSKADM--GKVMGAIMPKVKGKA 134
Query: 548 NPGLLNKILLEKLN 561
+ L+NK++ +L+
Sbjct: 135 DGSLINKLVSSQLS 148
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.383
Gapped
Lambda K H
0.267 0.0825 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,593,994
Number of extensions: 544797
Number of successful extensions: 1680
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1618
Number of HSP's successfully gapped: 43
Length of query: 564
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 465
Effective length of database: 3,937,614
Effective search space: 1830990510
Effective search space used: 1830990510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.7 bits)