RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 043020
(564 letters)
>d2f2ab2 d.128.1.5 (B:4-293) Aspartyl/glutamyl-tRNA(Asn/Gln)
amidotransferase subunit B, GatB, N-terminal domain
{Staphylococcus aureus [TaxId: 1280]}
Length = 290
Score = 369 bits (949), Expect = e-126
Identities = 145/309 (46%), Positives = 205/309 (66%), Gaps = 19/309 (6%)
Query: 74 EAIIGIETHVQLSTLTKAFCTCPYNYGAQPNTSVCPICMGLPGALPVVNSKVVEFAVKLG 133
E +IG+E HV+L T +K F P ++GA+PN++ I + PG LPVVN + V++A++
Sbjct: 1 ETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNKRAVDWAMRAA 60
Query: 134 LALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFGIT 193
+ALN +++ SKFDRK YFYPD PK YQISQFD PI GY+D+++ G +R GIT
Sbjct: 61 MALNMEIATESKFDRKNYFYPDNPKAYQISQFDQPIGENGYIDIEV----DGETKRIGIT 116
Query: 194 RVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNRAGVPLLEIVSEPDMRTGLEAAEY 253
R+HMEEDAGK H + VDLNR G PL+EIVSEPD+R+ EA Y
Sbjct: 117 RLHMEEDAGKSTHKGEYSL-------------VDLNRQGTPLIEIVSEPDIRSPKEAYAY 163
Query: 254 AAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINRAIDF 313
+L+ +++Y GVS+ M+EGSLRCD N+S+RP GQ KFGTK E+KNLNSF+ + + +++
Sbjct: 164 LEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKGLEY 223
Query: 314 EIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILNKEY 373
E RQ G +I QETR ++E + KT+ MR KEG DYRYFPEPD+ + ++ +
Sbjct: 224 EEKRQEEELLNGG--EIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDAW 281
Query: 374 VDSIQSSLP 382
+ ++ ++P
Sbjct: 282 KERVRQTIP 290
>d2d6fc3 d.128.1.5 (C:1-270,C:396-444) Glutamyl-tRNA(Gln)
amidotransferase subunit E, GatE {Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 319
Score = 250 bits (639), Expect = 2e-79
Identities = 75/353 (21%), Positives = 132/353 (37%), Gaps = 77/353 (21%)
Query: 72 EYEAI---IGIETHVQLSTLTKAFCTCPYNYG-AQPNTSVCPICMGLPGALPVV------ 121
++E + +G+E H QL T +K FC C ++P+ + L
Sbjct: 2 DWEKVGLKMGLEIHQQLDTESKLFCPCRTELTDSEPDHDIVRNLRPTQSELGKFDRAAFE 61
Query: 122 ------------------------------NSKVVEFAVKLGLALNCKLSFNSKFDRKQY 151
N + +E AV + L LN ++ RKQ
Sbjct: 62 EAMRKLHFHYENYHEETCLVEADEEPPHPLNPEALEIAVTIALLLNMRVVDEFHTMRKQV 121
Query: 152 FYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFGITRVHMEEDAGKLLHADDGE 211
G+Q + +AT G+L+ I + +EEDA + +
Sbjct: 122 IDGSNTGGFQRTG---LVATDGHLETP--------QGTVKIENLCLEEDAARRIRETGDG 170
Query: 212 YSQEITFPIIYALQVDLNRAGVPLLEIVSEPDMRTGLEAAEYAAELQRLVRYLGVSNGNM 271
L+R G+PL+EI ++P M + E A ++ +++R V
Sbjct: 171 VV------------FRLDRLGIPLVEITTDPSMSDPQQLREVAYQIGQILRSTRVK---R 215
Query: 272 QEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINRAIDFEIARQALLYSQGKA--DQ 329
G++R D+N+SIR G +VE+K + I ++ E+ RQ L ++
Sbjct: 216 GLGTIRQDLNISIR------DGARVEVKGVQDLDLIPEIVEREVKRQLSLVEIRDTLQER 269
Query: 330 IVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILNKEYVDSIQSSLP 382
+ETR T +R R + E D+P + + ++ I+ +LP
Sbjct: 270 GPEETRKALP-DGNTQYLRPLPT--SSRMYLETDIPLFRIEDDLLEGIRRNLP 319
>d1zq1c3 d.128.1.5 (C:5-276,C:408-456) Glutamyl-tRNA(Gln)
amidotransferase subunit E, GatE {Pyrococcus abyssi
[TaxId: 29292]}
Length = 321
Score = 233 bits (596), Expect = 6e-73
Identities = 73/351 (20%), Positives = 120/351 (34%), Gaps = 76/351 (21%)
Query: 73 YEAI---IGIETHVQLSTLTKAFCTCPYNYGAQPN------------------------- 104
YE + +G+E H QL T K F P +
Sbjct: 6 YEELGLKVGLEIHRQLDT-KKLFSPVPSELSDKVEFTFQRRLRPTMSELGEIDPAALEEF 64
Query: 105 ---------TSVCPICMGLPGALPV--VNSKVVEFAVKLGLALNCKLSFNSKFDRKQYFY 153
+ + P + + +E A+++ LN K + RK
Sbjct: 65 KKGRVYVYEGNYELTDLVYMDEEPPRGPDREALEVALQIAYLLNAKPVDEVYYMRKIVID 124
Query: 154 PDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFGITRVHMEEDAGKLLHADDGEYS 213
G+Q + + GI + +EEDA +++ D E
Sbjct: 125 GSNVSGFQRTAIIAT-----------DGKVETPWGAVGIPTICLEEDAARIIERKDKEVI 173
Query: 214 QEITFPIIYALQVDLNRAGVPLLEIVSEPDMRTGLEAAEYAAELQRLVRYLGVSNGNMQE 273
L+R G+PL+EI + PD+ +A A + +R
Sbjct: 174 ------------YRLDRLGIPLIEISTTPDIHHPEQAKVVAKFIGDALRATKKVK--RGL 219
Query: 274 GSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINRAIDFEIARQALLYSQGKAD--QIV 331
G++R D+NVSI+ G ++EIK + I I+ E+ RQ L +
Sbjct: 220 GTIRQDLNVSIK------GGARIEIKGVQELDMIPIIIEREVERQLNLLKIRDELRKRGP 273
Query: 332 QETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILNKEYVDSIQSSLP 382
+ETR T MR G R +PE D+P + + + I+ +LP
Sbjct: 274 EETRRALP-DGNTEYMRPLPG--KARMYPETDIPPLRIPDDLKKKIKENLP 321
>d2f2ab1 a.182.1.2 (B:294-400) Aspartyl/glutamyl-tRNA(Asn/Gln)
amidotransferase subunit B, GatB, C-terminal domain
{Staphylococcus aureus [TaxId: 1280]}
Length = 107
Score = 99.0 bits (246), Expect = 1e-25
Identities = 42/106 (39%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 383 ELPEMKRRRY-EEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMGDIAAYMK 441
ELP+ ++ +Y E+GL D L ++ FF++TIE GADVKL +NW+MG + Y+
Sbjct: 1 ELPDERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADVKLTSNWLMGGVNEYLN 60
Query: 442 NEKLTINEIKLSAAELAELIASIKGATISGKIGKEILFELMAKGGT 487
++ + + KL+ LA +I I+ T+S KI K++ EL AKGG
Sbjct: 61 KNQVELLDTKLTPENLAGMIKLIEDGTMSSKIAKKVFPELAAKGGN 106
>d2d6fc1 a.182.1.2 (C:445-503) Glutamyl-tRNA(Gln) amidotransferase
subunit E, GatE, C-terminal domain {Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 59
Score = 62.5 bits (152), Expect = 2e-13
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 383 ELPEMKRRRY-EEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMGDIAA 438
ELP K+ R + GLS L V F E D + A+ + +
Sbjct: 1 ELPSEKKERIMRDYGLSEDLASQLVKRNLVDEFEAL-TEFRVDTTVIASLLAYTLRE 56
>d1zq1c1 a.182.1.2 (C:457-512) Glutamyl-tRNA(Gln) amidotransferase
subunit E, GatE, C-terminal domain {Pyrococcus abyssi
[TaxId: 29292]}
Length = 56
Score = 61.3 bits (149), Expect = 6e-13
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 383 ELPEMKRRRYEEM-GLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMGDI 436
ELP+ K RY + L L +D F + + G LAA+ ++ +
Sbjct: 1 ELPQAKVERYVKEYKLDRSLAQTLVDDERDELFEEL-VSMGVKPSLAASILVVVL 54
>d1ng6a_ a.182.1.1 (A:) Hypothetical protein YqeY {Bacillus subtilis
[TaxId: 1423]}
Length = 148
Score = 32.7 bits (74), Expect = 0.044
Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 8/127 (6%)
Query: 436 IAAYMKNEKLTINEIKLSAAELAELIASIKGATISGKIGK-EILFELMAKGGTVKGIIIE 494
+ A ++NE + + + L+ E +++ + + I+E
Sbjct: 29 VKASLQNEAIKLKKDSLTEDEELTVLSRELKQRKDSLQEFSNANRLDLVDKVQKELDILE 88
Query: 495 KDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKISKGKANPGLLNK 554
L + + E+ +V++ ++E G G +M KGKA+ L+NK
Sbjct: 89 VYLPEQLSEEELRTIVNETIAEVGAS-------SKADMGKVMGAIMPKVKGKADGSLINK 141
Query: 555 ILLEKLN 561
++ +L+
Sbjct: 142 LVSSQLS 148
>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 328
Score = 33.1 bits (75), Expect = 0.084
Identities = 18/142 (12%), Positives = 35/142 (24%), Gaps = 21/142 (14%)
Query: 309 RAIDFEIARQALLYSQGKADQIVQ-----ETRLWEEGSQKTVTMRKKEGLADYRYFPEPD 363
ID + L + Q+V + R+ + Y + D
Sbjct: 82 VGID-AAILEFL--VANEKVQVVNLGCGSDLRML----------PLLQMFPHLAYV-DID 127
Query: 364 LPEVILNKEYVDSIQSSLPEL--PEMKRRRYEEMGLSMQDVLFLANDINVARFFDATIEK 421
E + K + L + + A D+N ++
Sbjct: 128 YNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDLNDITETTRLLDV 187
Query: 422 GADVKLAANWIMGDIAAYMKNE 443
++ I + YM N
Sbjct: 188 CTKREIPTIVISECLLCYMHNN 209
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 202
Score = 29.4 bits (65), Expect = 0.95
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 472 KIGKEILFELM----AKGGTVKGIIIEKDLVQIVDPSEIEKMVDKV 513
++ ++ M A G + + I +D P E+E+++ K
Sbjct: 155 ELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILAKF 200
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId:
562]}
Length = 193
Score = 27.8 bits (62), Expect = 2.5
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 456 ELAELIASIKGAT-ISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVL 514
+ + IA++ G T IS +IG E+ + G K ++I KD I+D E + +
Sbjct: 104 AMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRV 163
Query: 515 SENPKQLEQ 523
++ +Q+E+
Sbjct: 164 AQIRQQIEE 172
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus
denitrificans [TaxId: 266]}
Length = 176
Score = 27.7 bits (62), Expect = 2.7
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 456 ELAELIASIKGAT-ISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVL 514
+ + IA + G IS +G ++ + G K + I KD IVD + + ++ +
Sbjct: 97 AMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARV 156
Query: 515 SENPKQLEQ 523
S+ +Q+E+
Sbjct: 157 SQIRQQIEE 165
>d1vh4a_ b.80.6.1 (A:) Stabilizer of iron transporter SufD
{Escherichia coli [TaxId: 562]}
Length = 413
Score = 28.1 bits (61), Expect = 3.3
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 466 GATISGKIGKEILFELMAKG---GTVKGIIIE---KDLVQIVDPSEIEKMVDKVLSE 516
GAT+ G+I E +F L ++G + +II +L + + +++ V + +
Sbjct: 353 GATV-GRIDDEQIFYLRSRGINQQDAQQMIIYAFAAELTEALRDEGLKQQVLARIGQ 408
>d2gycf1 d.99.1.1 (F:59-149) Ribosomal protein L9 C-domain
{Escherichia coli [TaxId: 562]}
Length = 91
Score = 25.9 bits (57), Expect = 4.2
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 449 EIKLSAAELAELIASIKGATISGKIGKE-ILF-----ELMAKGGTVKGIIIEKDLVQIVD 502
E+ +A AE I +++ TI+ K G E LF +A T G+ + K V++ +
Sbjct: 2 EVLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADAVTAAGVEVAKSEVRLPN 61
Query: 503 P 503
Sbjct: 62 G 62
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 233
Score = 27.4 bits (60), Expect = 4.5
Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 472 KIGKEILFELMAKGGTVKGI---IIEKDLVQIVDPSEIEKMVDKV 513
L E T I I + + + P+E++ + +
Sbjct: 188 HTAILTLKESFEGQMTEDNIEVGICNEAGFRRLTPTEVKDYLAAI 232
>d1tx3a1 c.52.1.19 (A:2-258) Restriction endonuclease HincII
{Haemophilus influenzae [TaxId: 727]}
Length = 257
Score = 27.3 bits (60), Expect = 5.1
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 109 PICMGLPGALPVVNSKVVEFAVKLGLALNCKLSFNSKFDRKQ 150
P +G + NS + F + G A S + F+ KQ
Sbjct: 67 PAIIGHEARYKLFNSPTLLFLLSRGKAATENWSIENLFEEKQ 108
>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 203
Score = 26.7 bits (58), Expect = 6.5
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 472 KIGKEILFELM----AKGGTVK-GIIIEKDLVQIVDPSEIEKMVDKV 513
+ + A GG + +I KD + +IE + K+
Sbjct: 153 DLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIRKL 199
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 350
Score = 27.0 bits (59), Expect = 7.0
Identities = 24/147 (16%), Positives = 45/147 (30%), Gaps = 8/147 (5%)
Query: 204 LLHADDGEYSQEITFPIIYALQVDLNRAGVPLLEIVSEPDMRTGLEAAEYAAELQRLVRY 263
L + + E ITF I + G P++ + E + + + Y
Sbjct: 147 LEYEGNVEDDMMITFQI-----SQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDY 201
Query: 264 LGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINRAIDFEIARQALLYS 323
+ + Q + R ++ EI+ L +R +DF+ + Y
Sbjct: 202 ILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLIC---GSRNLDFQALEETTEYD 258
Query: 324 QGKADQIVQETRLWEEGSQKTVTMRKK 350
G V WE T ++
Sbjct: 259 GGYTRDSVLIREFWEIVHSFTDEQKRL 285
>d2cfua1 d.106.1.3 (A:530-655) Alkylsulfatase SdsA1 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 126
Score = 25.6 bits (56), Expect = 8.4
Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 3/83 (3%)
Query: 474 GKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQG 533
GK + L ++ K+ + + +S + L + +
Sbjct: 29 GKALSINLRLPDIGENYLLELKNSHLNNLRGVQSEDAGQTVSIDRADLNRLLLKEVSAVR 88
Query: 534 FFAGQVMKISKGKANPGLLNKIL 556
+K S NP LL ++
Sbjct: 89 LVFEGKLKSS---GNPLLLGQLF 108
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.383
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,053,252
Number of extensions: 99692
Number of successful extensions: 389
Number of sequences better than 10.0: 1
Number of HSP's gapped: 365
Number of HSP's successfully gapped: 20
Length of query: 564
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 474
Effective length of database: 1,171,896
Effective search space: 555478704
Effective search space used: 555478704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.2 bits)