Query 043022
Match_columns 361
No_of_seqs 241 out of 1879
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 12:03:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043022.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043022hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03115 ferredoxin--NADP(+) r 100.0 3.2E-59 7E-64 442.0 35.1 295 67-361 73-367 (367)
2 PLN03116 ferredoxin--NADP+ red 100.0 7.2E-49 1.6E-53 367.4 31.6 288 73-361 13-307 (307)
3 cd06208 CYPOR_like_FNR These f 100.0 3.3E-48 7.2E-53 359.9 32.3 283 78-361 2-286 (286)
4 TIGR03224 benzo_boxA benzoyl-C 100.0 1.2E-46 2.7E-51 364.1 32.1 280 73-361 131-411 (411)
5 KOG1158 NADP/FAD dependent oxi 100.0 1.2E-47 2.5E-52 378.9 10.9 309 17-361 323-645 (645)
6 cd06207 CyPoR_like NADPH cytoc 100.0 5.2E-47 1.1E-51 365.2 14.7 303 21-361 72-382 (382)
7 cd06202 Nitric_oxide_synthase 100.0 4.8E-46 1E-50 360.3 13.7 303 23-361 86-402 (406)
8 cd06206 bifunctional_CYPOR The 100.0 5E-46 1.1E-50 358.6 13.4 301 21-361 70-384 (384)
9 cd06199 SiR Cytochrome p450- l 100.0 1.3E-45 2.7E-50 352.5 14.3 288 24-361 65-360 (360)
10 cd06204 CYPOR NADPH cytochrome 100.0 1.6E-45 3.4E-50 357.8 13.0 305 22-361 82-416 (416)
11 cd06182 CYPOR_like NADPH cytoc 100.0 6E-43 1.3E-47 321.0 29.0 257 90-361 3-267 (267)
12 cd06203 methionine_synthase_re 100.0 3E-45 6.5E-50 354.1 12.9 304 22-361 80-398 (398)
13 TIGR01931 cysJ sulfite reducta 100.0 2.2E-44 4.7E-49 363.3 12.5 286 27-361 304-597 (597)
14 COG0369 CysJ Sulfite reductase 100.0 3.8E-42 8.2E-47 340.5 27.5 268 79-361 216-587 (587)
15 cd06200 SiR_like1 Cytochrome p 100.0 1.4E-41 3E-46 308.7 27.6 236 92-361 6-245 (245)
16 PRK10953 cysJ sulfite reductas 100.0 1.1E-41 2.4E-46 342.1 29.0 269 78-361 231-600 (600)
17 PRK11872 antC anthranilate dio 100.0 5.1E-41 1.1E-45 318.9 25.5 253 45-340 72-328 (340)
18 PRK06214 sulfite reductase; Pr 100.0 4.1E-40 8.8E-45 324.4 28.7 270 77-361 161-530 (530)
19 PRK07609 CDP-6-deoxy-delta-3,4 100.0 1.2E-40 2.5E-45 317.0 22.5 252 45-340 69-325 (339)
20 cd06201 SiR_like2 Cytochrome p 100.0 1.7E-39 3.7E-44 301.6 27.2 237 83-361 44-289 (289)
21 PRK05464 Na(+)-translocating N 100.0 1.1E-38 2.3E-43 310.1 24.2 267 45-339 104-399 (409)
22 cd06211 phenol_2-monooxygenase 100.0 7.3E-39 1.6E-43 290.0 21.2 224 81-340 3-231 (238)
23 PRK08051 fre FMN reductase; Va 100.0 1.1E-38 2.4E-43 287.6 21.9 219 84-340 2-222 (232)
24 cd06189 flavin_oxioreductase N 100.0 1.5E-38 3.2E-43 285.4 21.1 216 87-340 1-217 (224)
25 cd06188 NADH_quinone_reductase 100.0 1.4E-38 3E-43 295.3 20.8 241 81-340 6-276 (283)
26 KOG1159 NADP-dependent flavopr 100.0 2.2E-40 4.9E-45 309.2 7.7 298 14-361 267-574 (574)
27 TIGR01941 nqrF NADH:ubiquinone 100.0 2.8E-38 6E-43 306.8 22.6 267 45-339 100-395 (405)
28 cd06210 MMO_FAD_NAD_binding Me 100.0 2.4E-38 5.1E-43 286.3 20.6 219 85-339 2-227 (236)
29 PRK05713 hypothetical protein; 100.0 2.9E-38 6.2E-43 296.9 21.0 237 45-340 64-301 (312)
30 cd06209 BenDO_FAD_NAD Benzoate 100.0 7.4E-38 1.6E-42 281.6 22.0 215 85-339 2-219 (228)
31 cd06213 oxygenase_e_transfer_s 100.0 7.5E-38 1.6E-42 281.4 20.9 216 85-339 1-219 (227)
32 cd06195 FNR1 Ferredoxin-NADP+ 100.0 1.6E-37 3.6E-42 281.7 23.2 238 88-361 1-241 (241)
33 PRK10926 ferredoxin-NADP reduc 100.0 2E-37 4.4E-42 281.9 23.7 223 83-335 3-228 (248)
34 cd06212 monooxygenase_like The 100.0 1E-37 2.2E-42 281.5 21.1 219 85-340 1-224 (232)
35 cd06190 T4MO_e_transfer_like T 100.0 1.4E-37 2.9E-42 280.6 19.0 216 89-338 1-221 (232)
36 PRK10684 HCP oxidoreductase, N 100.0 5.1E-37 1.1E-41 290.9 23.0 231 79-346 4-237 (332)
37 cd06187 O2ase_reductase_like T 100.0 9.6E-37 2.1E-41 273.5 20.0 215 89-339 1-216 (224)
38 PRK08345 cytochrome-c3 hydroge 100.0 1E-36 2.2E-41 283.1 19.5 221 81-340 2-239 (289)
39 cd06217 FNR_iron_sulfur_bindin 100.0 5.2E-36 1.1E-40 270.7 22.0 223 85-340 2-228 (235)
40 cd06215 FNR_iron_sulfur_bindin 100.0 2.3E-36 5.1E-41 272.3 19.5 218 88-339 2-223 (231)
41 cd06191 FNR_iron_sulfur_bindin 100.0 3.5E-36 7.5E-41 271.3 19.6 217 88-339 2-223 (231)
42 cd06194 FNR_N-term_Iron_sulfur 100.0 6.4E-36 1.4E-40 267.9 21.0 213 89-340 1-214 (222)
43 cd00322 FNR_like Ferredoxin re 100.0 1.2E-35 2.7E-40 265.8 22.8 216 91-339 2-217 (223)
44 cd06221 sulfite_reductase_like 100.0 3.3E-36 7.1E-41 274.8 19.4 213 89-340 1-217 (253)
45 PTZ00274 cytochrome b5 reducta 100.0 2.2E-35 4.7E-40 276.6 23.3 228 81-331 49-281 (325)
46 cd06184 flavohem_like_fad_nad_ 100.0 3.7E-35 7.9E-40 267.2 23.9 222 84-339 6-235 (247)
47 cd06214 PA_degradation_oxidore 100.0 2.3E-35 5E-40 267.5 22.1 225 85-339 2-232 (241)
48 TIGR02160 PA_CoA_Oxy5 phenylac 100.0 2.7E-35 5.9E-40 281.5 22.5 232 85-346 2-241 (352)
49 cd06196 FNR_like_1 Ferredoxin 100.0 2.8E-35 6E-40 263.0 20.9 211 86-339 2-212 (218)
50 cd06183 cyt_b5_reduct_like Cyt 100.0 9.7E-35 2.1E-39 262.1 23.7 222 88-339 2-228 (234)
51 PRK13289 bifunctional nitric o 100.0 4E-35 8.6E-40 285.1 22.7 223 84-340 154-385 (399)
52 cd06216 FNR_iron_sulfur_bindin 100.0 6.8E-35 1.5E-39 264.8 21.0 219 82-338 15-235 (243)
53 PRK08221 anaerobic sulfite red 100.0 1.6E-34 3.6E-39 264.8 20.5 212 84-339 7-218 (263)
54 KOG0534 NADH-cytochrome b-5 re 100.0 3.5E-34 7.6E-39 259.0 22.0 228 81-338 48-279 (286)
55 PTZ00319 NADH-cytochrome B5 re 100.0 7E-34 1.5E-38 265.1 24.3 242 80-339 29-294 (300)
56 COG1018 Hmp Flavodoxin reducta 100.0 1.6E-33 3.4E-38 256.5 24.8 217 83-340 4-223 (266)
57 TIGR02911 sulfite_red_B sulfit 100.0 7.9E-34 1.7E-38 260.0 20.9 212 84-339 5-216 (261)
58 cd06218 DHOD_e_trans FAD/NAD b 100.0 1.4E-33 3E-38 256.5 21.1 210 89-344 1-211 (246)
59 COG0543 UbiB 2-polyprenylpheno 100.0 9.9E-33 2.1E-37 251.0 21.9 208 86-339 9-218 (252)
60 cd06198 FNR_like_3 NAD(P) bind 100.0 8E-33 1.7E-37 246.8 20.1 198 104-340 9-208 (216)
61 PLN02252 nitrate reductase [NA 100.0 9.1E-33 2E-37 287.0 23.5 239 79-338 629-881 (888)
62 PRK00054 dihydroorotate dehydr 100.0 1.9E-32 4E-37 249.8 19.3 211 83-345 3-213 (250)
63 PRK06222 ferredoxin-NADP(+) re 100.0 3.5E-32 7.6E-37 251.7 21.0 203 87-338 2-206 (281)
64 cd06219 DHOD_e_trans_like1 FAD 100.0 3.4E-32 7.4E-37 247.7 20.2 203 88-339 2-206 (248)
65 cd06185 PDR_like Phthalate dio 100.0 6.4E-32 1.4E-36 240.1 19.0 197 91-340 2-203 (211)
66 cd06192 DHOD_e_trans_like FAD/ 100.0 2.4E-31 5.1E-36 241.6 21.7 200 89-336 1-201 (243)
67 cd06220 DHOD_e_trans_like2 FAD 100.0 1.4E-31 3E-36 241.6 19.4 200 88-347 2-201 (233)
68 COG2871 NqrF Na+-transporting 100.0 6.7E-32 1.4E-36 237.1 14.9 266 45-340 105-401 (410)
69 PRK05802 hypothetical protein; 100.0 5.3E-31 1.2E-35 247.1 21.3 209 81-335 61-276 (320)
70 cd06197 FNR_like_2 FAD/NAD(P) 100.0 9.8E-31 2.1E-35 233.7 16.7 189 91-335 2-212 (220)
71 PTZ00306 NADH-dependent fumara 100.0 4.6E-30 1E-34 276.8 22.8 232 79-339 909-1155(1167)
72 COG4097 Predicted ferric reduc 100.0 8E-30 1.7E-34 232.0 16.8 214 81-339 212-427 (438)
73 PRK12779 putative bifunctional 100.0 7.8E-29 1.7E-33 260.8 22.6 224 80-339 644-873 (944)
74 PRK12778 putative bifunctional 100.0 6.8E-29 1.5E-33 258.7 18.0 204 87-339 2-207 (752)
75 cd06193 siderophore_interactin 100.0 2.3E-28 5E-33 220.8 14.9 204 89-338 1-224 (235)
76 cd06186 NOX_Duox_like_FAD_NADP 100.0 1.4E-27 3E-32 212.0 17.7 179 104-334 12-197 (210)
77 PRK12775 putative trifunctiona 99.9 3E-26 6.4E-31 243.3 19.2 202 87-338 2-206 (1006)
78 PLN02292 ferric-chelate reduct 99.9 9.5E-24 2.1E-28 213.6 21.2 208 85-323 325-547 (702)
79 PLN02631 ferric-chelate reduct 99.9 1.1E-22 2.3E-27 205.6 19.4 172 87-284 310-491 (699)
80 PLN02844 oxidoreductase/ferric 99.9 4.9E-22 1.1E-26 201.7 20.3 203 89-323 316-536 (722)
81 PF00175 NAD_binding_1: Oxidor 99.9 4.2E-21 9.1E-26 152.3 11.2 109 214-330 1-109 (109)
82 KOG3378 Globins and related he 99.8 1.9E-21 4.1E-26 170.2 6.5 218 83-340 148-373 (385)
83 KOG0039 Ferric reductase, NADH 99.8 1.9E-18 4.2E-23 175.6 18.5 227 86-338 356-634 (646)
84 PF00970 FAD_binding_6: Oxidor 99.7 4.8E-17 1.1E-21 126.7 9.2 95 86-202 1-98 (99)
85 PRK06567 putative bifunctional 99.6 1.3E-14 2.8E-19 150.3 18.8 126 82-233 788-914 (1028)
86 PF08030 NAD_binding_6: Ferric 99.5 8E-14 1.7E-18 117.7 9.2 122 210-332 2-155 (156)
87 PF00667 FAD_binding_1: FAD bi 99.1 2.7E-13 5.9E-18 121.0 -9.4 133 20-182 83-219 (219)
88 PF08022 FAD_binding_8: FAD-bi 99.1 6.4E-12 1.4E-16 98.8 -0.9 91 87-200 4-103 (105)
89 COG2375 ViuB Siderophore-inter 99.1 1.6E-08 3.4E-13 90.9 20.4 222 82-349 15-259 (265)
90 PF08021 FAD_binding_9: Sidero 98.5 2.4E-07 5.3E-12 74.1 7.1 96 88-201 1-117 (117)
91 PF00667 FAD_binding_1: FAD bi 95.1 0.058 1.3E-06 48.0 6.4 52 79-130 3-55 (219)
92 TIGR01931 cysJ sulfite reducta 89.0 1.1 2.4E-05 46.1 7.0 53 78-130 228-281 (597)
93 cd06204 CYPOR NADPH cytochrome 85.1 2.3 5E-05 41.7 6.6 47 83-130 4-51 (416)
94 PF04954 SIP: Siderophore-inte 83.3 11 0.00024 29.8 8.6 104 210-339 2-107 (119)
95 cd06206 bifunctional_CYPOR The 79.4 3.4 7.4E-05 40.0 5.3 44 88-131 1-44 (384)
96 cd06199 SiR Cytochrome p450- l 76.9 4.1 8.9E-05 39.1 5.0 43 89-131 2-45 (360)
97 PF00677 Lum_binding: Lumazine 74.2 13 0.00027 27.7 6.0 76 85-195 6-83 (85)
98 cd06207 CyPoR_like NADPH cytoc 71.8 5.8 0.00013 38.4 4.6 43 89-131 2-45 (382)
99 cd06202 Nitric_oxide_synthase 66.7 9.1 0.0002 37.4 4.8 43 89-131 2-46 (406)
100 KOG1611 Predicted short chain- 63.2 65 0.0014 28.9 8.8 55 213-279 6-61 (249)
101 cd06203 methionine_synthase_re 61.4 13 0.00029 36.1 4.9 43 89-131 2-45 (398)
102 KOG1159 NADP-dependent flavopr 59.8 12 0.00027 36.9 4.2 52 80-131 192-244 (574)
103 PRK00036 primosomal replicatio 56.5 39 0.00084 26.4 5.6 53 139-200 15-78 (107)
104 COG1465 Predicted alternative 54.0 99 0.0022 28.7 8.6 36 154-200 260-295 (376)
105 PF01959 DHQS: 3-dehydroquinat 52.2 93 0.002 29.7 8.5 107 82-217 175-294 (354)
106 PLN02844 oxidoreductase/ferric 49.5 23 0.0005 37.3 4.5 26 312-337 674-699 (722)
107 PLN02292 ferric-chelate reduct 47.1 19 0.00042 37.7 3.5 32 305-336 658-689 (702)
108 PRK02290 3-dehydroquinate synt 46.4 1.4E+02 0.0031 28.3 8.7 108 82-217 165-284 (344)
109 PRK09783 copper/silver efflux 46.3 1.8E+02 0.0039 28.4 10.0 47 81-129 274-321 (409)
110 PRK12446 undecaprenyldiphospho 39.9 45 0.00097 31.8 4.6 24 210-233 2-27 (352)
111 KOG0257 Kynurenine aminotransf 34.4 53 0.0012 31.9 4.0 50 156-222 94-143 (420)
112 KOG0427 Ubiquitin conjugating 33.7 1.1E+02 0.0023 24.6 4.9 49 88-143 46-94 (161)
113 PLN02631 ferric-chelate reduct 33.2 44 0.00095 35.2 3.5 24 313-336 663-686 (699)
114 PRK13020 riboflavin synthase s 29.8 2.1E+02 0.0045 25.2 6.7 77 85-196 105-183 (206)
115 PRK09289 riboflavin synthase s 29.6 2E+02 0.0043 25.0 6.6 75 86-195 105-181 (194)
116 TIGR00999 8a0102 Membrane Fusi 27.9 4.2E+02 0.0091 23.5 8.8 46 83-130 153-199 (265)
117 KOG0339 ATP-dependent RNA heli 25.9 2.8E+02 0.0061 28.1 7.4 93 216-330 270-363 (731)
118 COG0075 Serine-pyruvate aminot 25.3 4.7E+02 0.01 25.4 8.8 95 183-282 73-171 (383)
119 PRK13020 riboflavin synthase s 24.6 2.7E+02 0.0059 24.4 6.5 78 85-197 8-87 (206)
120 COG0521 MoaB Molybdopterin bio 24.5 40 0.00086 28.6 1.2 15 210-224 68-82 (169)
121 PLN02673 quinolinate synthetas 23.5 60 0.0013 33.7 2.5 26 7-32 2-27 (724)
122 PRK09289 riboflavin synthase s 23.0 4.5E+02 0.0097 22.8 7.5 77 86-197 9-86 (194)
123 COG5310 Homospermidine synthas 21.1 2E+02 0.0043 27.4 5.1 43 312-354 154-206 (481)
124 PF05720 Dicty_CAD: Cell-cell 20.5 50 0.0011 24.3 0.9 23 12-34 9-31 (82)
125 PRK09578 periplasmic multidrug 20.1 4.6E+02 0.0099 25.2 7.8 44 84-129 254-298 (385)
No 1
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=100.00 E-value=3.2e-59 Score=441.95 Aligned_cols=295 Identities=92% Similarity=1.482 Sum_probs=260.3
Q ss_pred ccccccccccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceeccccc
Q 043022 67 SKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIAS 146 (361)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias 146 (361)
...++.+++.|.|.|+.++.++|+.+.+++.+...+++++|+|+.+..++|.||||+.|.+++.+.+|.++..|+|||+|
T Consensus 73 ~~~~~~~~~~n~~~~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~~~~~f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS 152 (367)
T PLN03115 73 SKKNEEGVVVNKFRPKEPYTGRCLLNTKITGDDAPGETWHMVFSTEGEIPYREGQSIGVIPDGIDKNGKPHKLRLYSIAS 152 (367)
T ss_pred cchhccCCceEeeccCCCeEEEEEeecccccCCCCCceEEEEEcCCCCCCcCCCCEEEEEcCCcCCCCCcCceeeeecCC
Confidence 34455678999999999999999999999998888899999999888899999999999988766666677789999999
Q ss_pred CCCCCCCCCcEEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHH
Q 043022 147 SALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRG 226 (361)
Q Consensus 147 ~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~ 226 (361)
.|..+..++++++|+||++.|.+..+....|.+|+||+++++||.|.|.||+|++|++|.++.+++||||||||||||++
T Consensus 153 ~p~~~~~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~Gd~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs 232 (367)
T PLN03115 153 SALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRS 232 (367)
T ss_pred CCcccCCCCCEEEEEEEEEEeecCCCccCCeehHhhHhhCCCcCEEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHH
Confidence 98532223579999999987876666667899999999999999999999999988887666789999999999999999
Q ss_pred HHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHH
Q 043022 227 FLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELW 306 (361)
Q Consensus 227 ~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~ 306 (361)
|+++++.....+.+..++++||||+|+.+|++|.+||++|+++++++|++++++||++.+|.|.++|||++|.++.++++
T Consensus 233 ~L~~~~~~~~~~~~~~~~v~Lf~G~R~~~dlly~dELe~l~~~~p~~f~v~~a~SR~~~~~~G~kgyVqd~i~e~~e~l~ 312 (367)
T PLN03115 233 FLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTNAKGEKMYIQTRMAEYAEELW 312 (367)
T ss_pred HHHHHHhhccccccCCCcEEEEEccCCHHHhhHHHHHHHHHHhCCCCEEEEEEEcCCCcccCCcceeehhHHHHHHHHHH
Confidence 99987644322222246899999999999999999999999988779999999999988899999999999999888888
Q ss_pred HHhccCCeEEEEECCcchHHHHHHHHHHHHHccCCCHHHHHHHHHHcCCeeEeeC
Q 043022 307 ELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 307 ~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~~~~~~~~~~l~~~~r~~~ev~ 361 (361)
+.+..++.+||+|||++|+++|.++|.++....+.+++++.++|+++|||++|||
T Consensus 313 ~~l~~~~~~vYiCGp~~M~~~V~~~l~~l~~~~g~~~~~~~~~lk~~~r~~~e~y 367 (367)
T PLN03115 313 ELLKKDNTYVYMCGLKGMEKGIDDIMVSLAAKDGIDWFEYKKQLKKAEQWNVEVY 367 (367)
T ss_pred hhcccCCeEEEEeCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHCCCeEEecC
Confidence 7775457899999999999999999999999999999999999999999999998
No 2
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=100.00 E-value=7.2e-49 Score=367.44 Aligned_cols=288 Identities=55% Similarity=0.963 Sum_probs=235.6
Q ss_pred ccccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCC--CCCCCCCceecccccCCCC
Q 043022 73 GVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVD--KNAKPHKLRLYSIASSALG 150 (361)
Q Consensus 73 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~--~~~~~~~~R~ySias~p~~ 150 (361)
..+.+.|.+..++.++|++++.++...++.++++|+|+.++.++|.||||+.|.+++.+ .++.+...|+|||+|+|..
T Consensus 13 ~~~~~~~~~~~~~~~~V~~i~~~~~p~~~~~v~~l~l~~~~~~~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~ 92 (307)
T PLN03116 13 EPPLNLYKPKAPYTATIVSVERIVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYG 92 (307)
T ss_pred CCceeeccCCCCEEEEEEeeEEcccCCCCCceEEEEEecCCCCceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCC
Confidence 34556788889999999999999922222339999999998999999999999976532 2343445899999999953
Q ss_pred CCCCCcEEEEEEEEeeEecCCC----ceecCccchhhhcCCCCCEEEEEccCCCCcCCCC-CCCCcEEEEecCCchhhHH
Q 043022 151 DFGDSKTVSLCVKRLVYTNENG----EIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPR-DPNATVIMLATGTGIAPFR 225 (361)
Q Consensus 151 ~~~~~~~l~~~V~~~~~~~~~~----~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~-~~~~~iv~Ia~GtGiaP~~ 225 (361)
+..++..|+|+|++..|..+.. ...+|.+|+||+++++|+.|.|.||+|.+|..+. +..+++||||||||||||+
T Consensus 93 ~~~~~~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~ 172 (307)
T PLN03116 93 DDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPGDKVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFR 172 (307)
T ss_pred cCCCCCEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCCCCEEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHH
Confidence 1102248999999875543211 1258999999999999999999999999877653 4457999999999999999
Q ss_pred HHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHH
Q 043022 226 GFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANEL 305 (361)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~ 305 (361)
+|+++++.......+..++++||||+|+.+|++|.+||++|+++++++|++++++|++...|.+.++||++.+.+..+++
T Consensus 173 sml~~~l~~~~~~~~~~~~v~L~~g~R~~~d~~~~deL~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~l~~~~~~~ 252 (307)
T PLN03116 173 GFLRRMFMEDVPAFKFGGLAWLFLGVANSDSLLYDDEFERYLKDYPDNFRYDYALSREQKNKKGGKMYVQDKIEEYSDEI 252 (307)
T ss_pred HHHHHHHhhccccccCCCcEEEEEecCCcccchHHHHHHHHHHhCCCcEEEEEEEccCCcccCCCccchhhHHHHHHHHH
Confidence 99998876432211123689999999999999999999999998876899999999988888888899999988876666
Q ss_pred HHHhccCCeEEEEECCcchHHHHHHHHHHHHHccCCCHHHHHHHHHHcCCeeEeeC
Q 043022 306 WELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 306 ~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~~~~~~~~~~l~~~~r~~~ev~ 361 (361)
...+. .+..+|+|||+.|++++.+.|.++....+.+++++++.|+++|||++|+|
T Consensus 253 ~~~~~-~~~~vYiCGp~~mv~~v~~~L~~~~~~~g~~~~~~~~~l~~~~r~~~~~~ 307 (307)
T PLN03116 253 FKLLD-NGAHIYFCGLKGMMPGIQDTLKRVAEERGESWEEKLSGLKKNKQWHVEVY 307 (307)
T ss_pred Hhhhc-CCcEEEEeCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHcCceEEecC
Confidence 55554 47899999999999999999999999888999999999999999999999
No 3
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=100.00 E-value=3.3e-48 Score=359.93 Aligned_cols=283 Identities=64% Similarity=1.138 Sum_probs=235.4
Q ss_pred cccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCC-CCCCCCceecccccCCCCCCCCCc
Q 043022 78 KFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDK-NAKPHKLRLYSIASSALGDFGDSK 156 (361)
Q Consensus 78 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~-~~~~~~~R~ySias~p~~~~~~~~ 156 (361)
.|.+++++.++|++++.++++.++.++++++|+.+..++|.|||||.|.+++.+. ++.+...|+|||+|.|..+..+.+
T Consensus 2 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~ 81 (286)
T cd06208 2 LYKPKNPLIGKVVSNTRLTGPDAPGEVCHIVIDHGGKLPYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGK 81 (286)
T ss_pred CCCCCCCeEEEEEeceeccCCCCCcceEEEEEeCCCcccccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCC
Confidence 4678889999999999999766666699999999878899999999998765432 333446899999999853111347
Q ss_pred EEEEEEEEeeEecC-CCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhc
Q 043022 157 TVSLCVKRLVYTNE-NGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK 235 (361)
Q Consensus 157 ~l~~~V~~~~~~~~-~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~ 235 (361)
.++|+||++++.++ .++.+.|.+|.||+++++|+.|.|.||+|++|..+.+..+++||||||||||||++|+++++...
T Consensus 82 ~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~ 161 (286)
T cd06208 82 TLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPGDDVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREK 161 (286)
T ss_pred EEEEEEEEEEEecCCCCceeccchHHHHhhCCCCCEEEEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhh
Confidence 99999999875332 22455699999999999999999999999988776555579999999999999999999887652
Q ss_pred ccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeE
Q 043022 236 HEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTY 315 (361)
Q Consensus 236 ~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~ 315 (361)
....+..++++|+||+|+.+|++|.++|++|.+++++++++++++|++++.|.+.++||++.+.+..+++++.+..++..
T Consensus 162 ~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~i~~~~~~l~~~l~~~~~~ 241 (286)
T cd06208 162 HADYKFTGLAWLFFGVPNSDSLLYDDELEKYPKQYPDNFRIDYAFSREQKNADGGKMYVQDRIAEYAEEIWNLLDKDNTH 241 (286)
T ss_pred hcccCCCCCEEEEEEecCccchhHHHHHHHHHHhCCCcEEEEEEEcCCCCCCCCCceehhhHHHHhHHHHHHHHhcCCcE
Confidence 11111236899999999999999999999999988768999999999888888889999999988777766656534568
Q ss_pred EEEECCcchHHHHHHHHHHHHHccCCCHHHHHHHHHHcCCeeEeeC
Q 043022 316 VYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 316 vyvCGp~~m~~~v~~~L~~~g~~~~~~~~~~~~~l~~~~r~~~ev~ 361 (361)
||+|||++|++++.+.|.++.. .+..++++++.|+++|||+.|+|
T Consensus 242 vYiCGp~~m~~~v~~~L~~~~~-~~~~~~~~~~~~~~~gr~~~~~~ 286 (286)
T cd06208 242 VYICGLKGMEPGVDDALTSVAE-GGLAWEEFWESLKKKGRWHVEVY 286 (286)
T ss_pred EEEeCCchHHHHHHHHHHHHHh-ccHHHHHHHHHHHHcCCeEEecC
Confidence 9999999999999999999887 45678999999999999999999
No 4
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=100.00 E-value=1.2e-46 Score=364.11 Aligned_cols=280 Identities=35% Similarity=0.642 Sum_probs=232.6
Q ss_pred ccccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCC
Q 043022 73 GVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGD 151 (361)
Q Consensus 73 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~ 151 (361)
..+.|.|.++.++.++|++++++++.....++++|+|+.+. .++|.||||+.|.+++.+.++.++..|+|||+|.|..+
T Consensus 131 ~~~~~~~~~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~ 210 (411)
T TIGR03224 131 HPYVNLYGVKAPITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGE 210 (411)
T ss_pred CCccccccCCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcCcCCCcCcceeeeecCCCCcc
Confidence 45667899999999999999999886555669999999876 68899999999998866555556678999999987421
Q ss_pred CCCCcEEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHH
Q 043022 152 FGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKM 231 (361)
Q Consensus 152 ~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~ 231 (361)
....+.|+|+||++++ ...+...+|.+|+||+++++||+|.+.||+|++|.++....+++||||||||||||++|++++
T Consensus 211 ~~~~~~l~l~Vk~v~~-~~~g~~~~G~~S~~L~~lk~Gd~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~ 289 (411)
T TIGR03224 211 RPGYNNLALTVKRVTT-DHQGNAVRGVASNYLCDLKKGDKVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERR 289 (411)
T ss_pred CCCCCEEEEEEEEEEe-cCCCCcCcccchhHHhcCCCcCEEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHH
Confidence 1122589999999852 223445579999999999999999999999998888755568999999999999999999988
Q ss_pred HhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhcc
Q 043022 232 FFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKK 311 (361)
Q Consensus 232 ~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~ 311 (361)
....... ..++++||||+|+.+|++|.+||++|.+.+ +++++++|+++.. .++||++.+.+..+++.+.+..
T Consensus 290 ~~~~~~~--~~~~v~L~~G~Rt~~dl~y~~eL~~l~~~~---~~~~~~~sr~~~~---~~g~V~d~l~~~~~~v~~ll~~ 361 (411)
T TIGR03224 290 RRRRDHG--EGGKLMLFFGARTKEELPYFGPLQKLPKDF---IDINFAFSRTPEQ---PKRYVQDAIRERAADVAALLKD 361 (411)
T ss_pred HHHhhcC--CCCCEEEEEecCccccchHHHHHHHHHhcC---ceEEEEeccCCcc---CcccHhhHHHHhHHHHHHHHhc
Confidence 6532111 137899999999999999999999998764 4566688886432 6789999998877777666653
Q ss_pred CCeEEEEECCcchHHHHHHHHHHHHHccCCCHHHHHHHHHHcCCeeEeeC
Q 043022 312 DNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 312 ~~~~vyvCGp~~m~~~v~~~L~~~g~~~~~~~~~~~~~l~~~~r~~~ev~ 361 (361)
++..||+|||+.|++++.+.|.+++.+.+..++++.++|+++||||.|+|
T Consensus 362 ~~~~vYiCGp~~M~~~v~~~L~~~~~~~~~~~~~~~~~l~~~~r~~~e~~ 411 (411)
T TIGR03224 362 PNTYIYICGLKGMEEGVLDAFRDVCATNGLSWETLEPRLRAEGRLHLETY 411 (411)
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHCCCeEEecC
Confidence 46889999999999999999999999999999999999999999999999
No 5
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=1.2e-47 Score=378.90 Aligned_cols=309 Identities=36% Similarity=0.571 Sum_probs=246.4
Q ss_pred CCcccceecCCCcccccccceeeeeeec--cceeEEEeeecccCccchhh--hcccccccccccccccCCCCeeEEEEeE
Q 043022 17 SLPTRTSIISPDRITFRKVPFYYKDVST--GGRVVSVRAQVTTEAPAKVE--KESKKMEEGVIVNKFKPKTPYIGRCLLN 92 (361)
Q Consensus 17 ~~~~~~~~p~p~~~t~~~~~~~y~di~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 92 (361)
..+...+-|+|.|||+|++|+||+||++ +++++.+++++|+++++++. .+..++... .|.. +.......+
T Consensus 323 ~~~~~~~~p~~~~~t~~~~l~~~ldi~~~P~k~ll~~La~~a~d~~Eke~L~~L~s~~g~~----~y~~--~~~~~~~tl 396 (645)
T KOG1158|consen 323 PTPAKKPHPFPLPTTLRTALTHYLDITGPPKKQLLRLLAEYATDPAEKERLEILSSKQGAE----EYPR--WVRQSCLTL 396 (645)
T ss_pred CCccccCCCCCCCCcHHHHHHHhccccCCCcHHHHHHHHHhcCCchHHHHHHHHhCccchh----hHhH--HHhcccccH
Confidence 4556677899999999999999999999 99999999999999998883 344442211 1222 111110111
Q ss_pred eeecCCCCCCceEEEEeeCCCcccc--CCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecC
Q 043022 93 TKITGDDAPGETWHMVFSTEGEVPY--KEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNE 170 (361)
Q Consensus 93 ~~~~~~~~~~~~~~l~l~~~~~l~~--~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~ 170 (361)
-.+.. .++. .|+.|+-=.+| ++++|+|||+|+|.. +++.+++++..+.|..+
T Consensus 397 ~dVl~----------------~fps~kpP~~~ll~~lp-------~L~pR~YSIssS~~~---~~~~vhl~~~vv~~~~~ 450 (645)
T KOG1158|consen 397 LDVLE----------------AFPSCKPPLPHLLELLP-------RLQPRYYSISSSPKV---HPNEVHLTVTVVEYGTP 450 (645)
T ss_pred HHHHh----------------hCCCCCCCHHHHHHhCc-------cccccccccccCccc---CCCEEEEEEEEeeeccC
Confidence 11111 1121 33333222233 568999999999987 88999999999999886
Q ss_pred CC-ceecCccchhhhcCCCCCEEEEEccCCCC-cCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEE
Q 043022 171 NG-EIVKGVCSNFLCDLKPGAEVKITGPVGKE-MLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLF 248 (361)
Q Consensus 171 ~~-~~~~G~~S~~L~~l~~G~~v~i~gP~G~~-~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~ 248 (361)
++ ..+.|.||+||+++++|+.+..-+|.+.+ |.+|.++..|+||||.|||||||++|++++.....++......+|||
T Consensus 451 dg~~~r~GVcS~~L~~l~~~~~~~~~~~~~~s~frlp~dp~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~~~Lf 530 (645)
T KOG1158|consen 451 DGGPKRYGVCSNWLSNLKPGEKVPNPVPVGKSMFRLPSDPSTPIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGGMWLF 530 (645)
T ss_pred CCCCccceehhhhHHhcCCccccCcceeecccceecCCCCCCcEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcceEEE
Confidence 64 77889999999999999998854555543 77887889999999999999999999998877654443323339999
Q ss_pred EeccCCc-ccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcc-hHH
Q 043022 249 LGVPTSS-SLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRG-MEK 326 (361)
Q Consensus 249 ~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~-m~~ 326 (361)
||||+.+ |++|++||+++.+... ++++.+++||++. +.+.|||++++++.+++++.+..++++|||||+.. |++
T Consensus 531 ~GcR~~~~d~LY~eE~~~~~~~~~-l~~l~~A~SReq~---~~k~YVQd~l~e~~d~v~~~L~~~~g~iYvCGd~~~Ma~ 606 (645)
T KOG1158|consen 531 FGCRNSDEDYLYREEWEEYKKAGI-LTRLDVAFSREQT---PKKIYVQDRLREYADEVWELLKKEGGHIYVCGDAKGMAK 606 (645)
T ss_pred EeCCCchHHHHHHHHHHHHHhcCc-chhheeeeeccCC---CCceehhhHHHHHHHHHHHHHhcCCcEEEEecCCccchH
Confidence 9999998 7799999999966654 8999999999974 48999999999999999999976799999999997 999
Q ss_pred HHHHHHHHHHHccC----CCHHHHHHHHHHcCCeeEeeC
Q 043022 327 GIDDIMVSLAANDG----IDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 327 ~v~~~L~~~g~~~~----~~~~~~~~~l~~~~r~~~ev~ 361 (361)
+|.++|.++..+.+ .+++.++++|++++||++|||
T Consensus 607 dV~~~L~~i~~~~g~~~~~ea~~~lk~lk~~~Ry~~DVw 645 (645)
T KOG1158|consen 607 DVQDALVRILAKDGGLSEEEAEKYLKQLKKSKRYIEDVW 645 (645)
T ss_pred HHHHHHHHHHHhhCCccHHHHHHHHHHhhhccccccccC
Confidence 99999999999988 899999999999999999999
No 6
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=100.00 E-value=5.2e-47 Score=365.19 Aligned_cols=303 Identities=25% Similarity=0.390 Sum_probs=232.8
Q ss_pred cceecCCCcccccccceeeeeeec--cceeEEEeeecccCccchhhhcccccccccccccccCCCCeeEEEEeEeeecCC
Q 043022 21 RTSIISPDRITFRKVPFYYKDVST--GGRVVSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGD 98 (361)
Q Consensus 21 ~~~~p~p~~~t~~~~~~~y~di~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 98 (361)
..+.|+|.|+|++++|++|+||++ +++++..|+.++.+...+.......+.++. ..|... .-.++..+..+
T Consensus 72 ~~~~~~~~~~t~~~ll~~~~dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~~~~~~--~~~~~~-----~~~~~~d~L~~ 144 (382)
T cd06207 72 RGKPPFPEPISVRQLLKKFLDIFGKPTKKFLKLLSQLATDEEEKEDLYKLASREGR--TEYKRY-----EKYTYLEVLKD 144 (382)
T ss_pred ccCCCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhChhhH--HHHHhc-----cCCCHHHHHHh
Confidence 456789999999999999999999 999999999999988876532211111110 011111 11111111111
Q ss_pred CCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCceecCc
Q 043022 99 DAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGV 178 (361)
Q Consensus 99 ~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~ 178 (361)
|.. .+...+..+.+. + ++++|+|||+|+|.. +++.++|+|+++.|.++.++.+.|.
T Consensus 145 ----------f~~---~~~~~~~ll~~l-p-------~l~~R~YSIaSsp~~---~~~~i~l~V~~v~~~~~~~~~~~G~ 200 (382)
T cd06207 145 ----------FPS---VRPTLEQLLELC-P-------LIKPRYYSISSSPLK---NPNEVHLLVSLVSWKTPSGRSRYGL 200 (382)
T ss_pred ----------CCc---CCCCHHHHHHhC-c-------CCCCceeeecCCCcC---CCCeEEEEEEEEEeeCCCCCeeccc
Confidence 000 011111222222 1 558999999999964 4689999999998888777788999
Q ss_pred cchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCC-ccc
Q 043022 179 CSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTS-SSL 257 (361)
Q Consensus 179 ~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~-~d~ 257 (361)
+|+||+++++|+.|.+.+|.|. |.++.+..+|+||||+|||||||++|++++......+ ...++++||||+|+. .|+
T Consensus 201 ~S~~L~~l~~Gd~v~v~~p~g~-F~lp~~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~-~~~~~~~L~~G~R~~~~d~ 278 (382)
T cd06207 201 CSSYLAGLKVGQRVTVFIKKSS-FKLPKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQG-PEIGPVLLYFGCRHEDKDY 278 (382)
T ss_pred HHHHHhhcCCCCEEEEEEECCc-ccCCCCCCCCEEEEcCCccHHHHHHHHHHHHHHhhcC-ccCCCEEEEECCCCCCccc
Confidence 9999999999999999999996 5666666789999999999999999999865431111 124789999999999 799
Q ss_pred ccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcc-hHHHHHHHHHHHH
Q 043022 258 LYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRG-MEKGIDDIMVSLA 336 (361)
Q Consensus 258 ~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~-m~~~v~~~L~~~g 336 (361)
+|.+||++|.+.+. ++++++++||++. .++|||+.+.+..+.+.+.+..+.+.||+|||+. |+++|++.|.+++
T Consensus 279 ~y~~el~~~~~~~~-~~~~~~a~Srd~~----~~~yVq~~l~~~~~~~~~~l~~~~~~vYvCG~~~~M~~~V~~~L~~~~ 353 (382)
T cd06207 279 LYKEELEEYEKSGV-LTTLGTAFSRDQP----KKVYVQDLIRENSDLVYQLLEEGAGVIYVCGSTWKMPPDVQEAFEEIL 353 (382)
T ss_pred cHHHHHHHHHhCCC-CceEEEEecCCCC----CceEhHHHHHHCHHHHHHHHhcCCCEEEEECCcccccHHHHHHHHHHH
Confidence 99999999998876 8899999999764 5899999998887777777763345999999998 9999999999999
Q ss_pred HccC----CCHHHHHHHHHHcCCeeEeeC
Q 043022 337 ANDG----IDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 337 ~~~~----~~~~~~~~~l~~~~r~~~ev~ 361 (361)
.+.+ ..+++|+++|+++|||++|||
T Consensus 354 ~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 382 (382)
T cd06207 354 KKHGGGDEELAEKKIEELEERGRYVVEAW 382 (382)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 9875 568999999999999999999
No 7
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=100.00 E-value=4.8e-46 Score=360.28 Aligned_cols=303 Identities=25% Similarity=0.358 Sum_probs=228.9
Q ss_pred eecCCCcccccccceeeeeeec--cceeEEEeeecccCccchhhh--cccccccccccccccCCCCeeEEEEeEeeecCC
Q 043022 23 SIISPDRITFRKVPFYYKDVST--GGRVVSVRAQVTTEAPAKVEK--ESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGD 98 (361)
Q Consensus 23 ~~p~p~~~t~~~~~~~y~di~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 98 (361)
+.++|.|+|++++|++|+||++ +++++..|+.++++...+... +..+.++ ...|..... .+++++-...+.
T Consensus 86 ~~~~~~~~tl~~ll~~~lDl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~---~~~~~~~~~--~~~~dvL~~f~s 160 (406)
T cd06202 86 PHERLPPCTLRQALTRYLDITTPPTPQLLQLLATLATDEKDKERLEVLGKGSSE---YEDWKWYKN--PNILEVLEEFPS 160 (406)
T ss_pred ccCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhcCHHH---HHHHHhccC--CCHHHHHHhCCc
Confidence 3566779999999999999999 888999999999998776632 2221111 001111000 011111111111
Q ss_pred CCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecC--CCceec
Q 043022 99 DAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNE--NGEIVK 176 (361)
Q Consensus 99 ~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~--~~~~~~ 176 (361)
......+.+.+.+ ++++|+|||+|+|.. +++.++|+|+.+.|.++ .+..+.
T Consensus 161 ----------------~~~~~~~ll~~lp--------~l~pR~YSIsSsp~~---~~~~~~l~v~vv~~~~~~~~~~~~~ 213 (406)
T cd06202 161 ----------------LQVPASLLLTQLP--------LLQPRYYSISSSPDM---YPGEIHLTVAVVSYRTRDGQGPVHH 213 (406)
T ss_pred ----------------CCCCHHHHHHhCc--------ccCCcccccCCCccC---CCCeEEEEEEEEEEECCCCCCCccc
Confidence 1111122333332 558999999999964 47899999999877653 234578
Q ss_pred CccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcc---cccccCCeEEEEEeccC
Q 043022 177 GVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKH---EDYKFNGLAWLFLGVPT 253 (361)
Q Consensus 177 G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~---~~~~~~~~i~L~~g~r~ 253 (361)
|.+|+||+++++|+.|.+.++.+..|.+|.+..+|+||||+|||||||++|++++..... ......++++||||+|+
T Consensus 214 G~~S~~L~~l~~Gd~v~v~~~~~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~ 293 (406)
T cd06202 214 GVCSTWLNGLTPGDTVPCFVRSAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRN 293 (406)
T ss_pred ccHHHHHHhCCCCCEEEEEEeeCCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCC
Confidence 999999999999999999886554577877777899999999999999999987643210 11112479999999999
Q ss_pred C-cccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHH
Q 043022 254 S-SSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIM 332 (361)
Q Consensus 254 ~-~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L 332 (361)
. .|++|.+||++|.+.+. ++++++++||++.. .++|||+.+.+..+++++.+...++.||+|||+.|+++|.++|
T Consensus 294 ~~~d~ly~~El~~~~~~~~-~~~~~~a~SR~~~~---~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~~~M~~~V~~~L 369 (406)
T cd06202 294 STIDDIYKEETEEAKNKGV-LTEVYTALSREPGK---PKTYVQDLLKEQAESVYDALVREGGHIYVCGDVTMAEDVSQTI 369 (406)
T ss_pred CCcccchHHHHHHHHHcCC-CceEEEEEcCCCCC---CCeehhhHHHHhHHHHHHHHHhCCCEEEEeCCCchHHHHHHHH
Confidence 9 69999999999998766 88899999997532 5799999999988888887744689999999999999999999
Q ss_pred HHHHHccC----CCHHHHHHHHHHcCCeeEeeC
Q 043022 333 VSLAANDG----IDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 333 ~~~g~~~~----~~~~~~~~~l~~~~r~~~ev~ 361 (361)
.++..+.+ ..+++|+++|+++|||++|||
T Consensus 370 ~~i~~~~~~~s~~~A~~~~~~l~~~gRy~~dvw 402 (406)
T cd06202 370 QRILAEHGNMSAEEAEEFILKLRDENRYHEDIF 402 (406)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCeEEEec
Confidence 99888865 568999999999999999999
No 8
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=100.00 E-value=5e-46 Score=358.57 Aligned_cols=301 Identities=24% Similarity=0.376 Sum_probs=232.1
Q ss_pred cceecCCCcccccccceeeeeeec--cceeEEEeeecccCccchhhhcccccccccccccccCCCCeeEEEEeEeeecCC
Q 043022 21 RTSIISPDRITFRKVPFYYKDVST--GGRVVSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGD 98 (361)
Q Consensus 21 ~~~~p~p~~~t~~~~~~~y~di~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 98 (361)
..++|+|.|+|++++|++|+||++ +++++..++++|+++..+.......+++.. ...+.+. .++..+..+
T Consensus 70 ~~~~p~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~l~~~~~~~~~-~~~~~~~-------~~~~d~l~~ 141 (384)
T cd06206 70 ATGLPLGTPISVSELLSSYVELSQPATRRQLAALAEATRCPDTKALLERLAGEAYA-AEVLAKR-------VSVLDLLER 141 (384)
T ss_pred CCCCCCCCCEEHHHHHHhhccccCCCCHHHHHHHHHHCCCHHHHHHHHHhhhhHHH-HHHHhcC-------CCHHHHHHh
Confidence 446789999999999999999999 899999999999998777632111111100 0001110 111111111
Q ss_pred CCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCC-ceecC
Q 043022 99 DAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENG-EIVKG 177 (361)
Q Consensus 99 ~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~-~~~~G 177 (361)
.+ ......||++.+.+ ++++|+|||+|+|.. +++.++|+|+.+.+.+..+ ..+.|
T Consensus 142 ------------f~-s~~~~~~~~l~~~p--------~l~~R~YSIaSsp~~---~~~~i~l~v~v~~~~~~~~~~~~~G 197 (384)
T cd06206 142 ------------FP-SIALPLATFLAMLP--------PMRPRQYSISSSPLV---DPGHATLTVSVLDAPALSGQGRYRG 197 (384)
T ss_pred ------------CC-CCCCCHHHHHHhCc--------ccCCcceeeccCccC---CCCeEEEEEEEEEeecCCCCceeee
Confidence 11 12356699999984 347999999999963 4688999999987765433 56789
Q ss_pred ccchhhhcCCCCCEEEE--EccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCC-
Q 043022 178 VCSNFLCDLKPGAEVKI--TGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTS- 254 (361)
Q Consensus 178 ~~S~~L~~l~~G~~v~i--~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~- 254 (361)
.+|+||+++++|+.|.+ .+|.|. |.++.+..+|+||||||||||||++|++++......+ ...++++||||+|+.
T Consensus 198 ~~S~~L~~l~~Gd~v~v~i~~p~g~-F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~-~~~~~v~L~~G~R~~~ 275 (384)
T cd06206 198 VASSYLSSLRPGDSIHVSVRPSHSA-FRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQG-RKLAPALLFFGCRHPD 275 (384)
T ss_pred ehHHHHhhCCCCCeEEEEEecCCCc-cCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcC-CCcCCEEEEEeCCCCC
Confidence 99999999999999986 578886 5556556789999999999999999999875432111 113689999999999
Q ss_pred cccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHH
Q 043022 255 SSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVS 334 (361)
Q Consensus 255 ~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~ 334 (361)
.|++|.+||++|++. + ++++++++|+++.. .++|||+.+.+..+++++.+. +++.+|+|||++|+++|.++|.+
T Consensus 276 ~d~ly~~el~~~~~~-~-~~~l~~a~Sr~~~~---~~~yVq~~i~~~~~~~~~~~~-~~~~vyiCGp~~M~~~v~~~L~~ 349 (384)
T cd06206 276 HDDLYRDELEEWEAA-G-VVSVRRAYSRPPGG---GCRYVQDRLWAEREEVWELWE-QGARVYVCGDGRMAPGVREVLKR 349 (384)
T ss_pred cccchHHHHHHHHHC-C-CeEEEEEecccCCC---CCEechhhHHhhHHHHHHHHH-CCcEEEEECCCchHHHHHHHHHH
Confidence 699999999999874 3 89999999987542 479999999888777777665 58899999999999999999999
Q ss_pred HHHccC--------CCHHHHHHHHHHcCCeeEeeC
Q 043022 335 LAANDG--------IDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 335 ~g~~~~--------~~~~~~~~~l~~~~r~~~ev~ 361 (361)
++.+.+ ..+++|+++|+++|||++|||
T Consensus 350 i~~~~~~~~~~~~~~~A~~~~~~l~~~gry~~dvw 384 (384)
T cd06206 350 IYAEKDERGGGSDDEEAEEWLEELRNKGRYATDVF 384 (384)
T ss_pred HHHHhCcccCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 999864 468899999999999999999
No 9
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=100.00 E-value=1.3e-45 Score=352.47 Aligned_cols=288 Identities=30% Similarity=0.468 Sum_probs=225.6
Q ss_pred ecCCCcccccccceeeeeeeccceeEEEeeecccCccchhhhcccccccccccccccCCCCeeEEEEeEeeecCCCCCCc
Q 043022 24 IISPDRITFRKVPFYYKDVSTGGRVVSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGE 103 (361)
Q Consensus 24 ~p~p~~~t~~~~~~~y~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 103 (361)
+++|.|+|++++|++|+||++. .+..++++|.+...+........+ .|... .++ ..+..+
T Consensus 65 ~~~~~~~t~~~~l~~~~dl~~~--~~~~l~~~a~~~~~~~~l~~~~~~------~~~~~----~~~---~d~L~~----- 124 (360)
T cd06199 65 TVGGGTLPLREALIKHYEITTL--LLALLESYAADTGALELLALAALE------AVLAF----AEL---RDVLDL----- 124 (360)
T ss_pred CCCCCcccHHHHHHhhhhhccC--hHHHHHHhcCCcchHHHHhhcCHH------HHHcc----CcH---HHHHHh-----
Confidence 5678999999999999999983 333466666665544422111111 11110 011 111111
Q ss_pred eEEEEeeCC-CccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCceecCccchh
Q 043022 104 TWHMVFSTE-GEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNF 182 (361)
Q Consensus 104 ~~~l~l~~~-~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~ 182 (361)
.+ ...++.|||++.+.++ .++|+|||+|+|.. +++.++|+|+++.|.+. ++.+.|.+|+|
T Consensus 125 -------f~~~~~~~~~gq~l~l~~~--------~~~R~YSIaSsp~~---~~~~i~l~v~~v~~~~~-~~~~~G~~S~~ 185 (360)
T cd06199 125 -------LPIPPARLTAEELLDLLRP--------LQPRLYSIASSPKA---VPDEVHLTVAVVRYESH-GRERKGVASTF 185 (360)
T ss_pred -------ccccCCCCCHHHHHHhCcC--------CCCcceeeccCccc---CCCeEEEEEEEeeecCC-CCccceehhHH
Confidence 11 1467899999999863 37999999999964 46899999999877653 35568999999
Q ss_pred hhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCC-cccccH
Q 043022 183 LCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTS-SSLLYK 260 (361)
Q Consensus 183 L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~-~d~~~~ 260 (361)
|++ +++|+.|.+.+|.|..|.++.+..+|+||||+|||||||++|++++..... .++++||||+|+. .|++|.
T Consensus 186 L~~~~~~Gd~v~v~~~~~~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~-----~~~~~L~~G~R~~~~D~~y~ 260 (360)
T cd06199 186 LADRLKEGDTVPVFVQPNPHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATGA-----KGKNWLFFGERHFATDFLYQ 260 (360)
T ss_pred HHhcCCCCCEEEEEEecCCCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhccC-----CCcEEEEEcCCCCccchhHH
Confidence 998 579999999987665677776667899999999999999999998765432 3789999999998 699999
Q ss_pred HHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCc-chHHHHHHHHHHHHHcc
Q 043022 261 EEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLR-GMEKGIDDIMVSLAAND 339 (361)
Q Consensus 261 ~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~-~m~~~v~~~L~~~g~~~ 339 (361)
+||++|.+.+. ++++++++||++. .++|||+.+.+..+++++++. +++.||+|||+ .|+++|+++|.++..+.
T Consensus 261 ~el~~~~~~~~-~~~~~~a~Sr~~~----~~~yVq~~l~~~~~~~~~~~~-~~~~vYvCG~~~~M~~~V~~~L~~i~~~~ 334 (360)
T cd06199 261 DELQQWLKDGV-LTRLDTAFSRDQA----EKVYVQDRMREQGAELWAWLE-EGAHFYVCGDAKRMAKDVDAALLDIIATE 334 (360)
T ss_pred HHHHHHHHcCC-CeEEEEEEccCCC----CCccHHHHHHHhHHHHHHHHh-CCCEEEEECCCccccHHHHHHHHHHHHHh
Confidence 99999998776 8999999999764 578999999988888877775 57899999999 89999999999998875
Q ss_pred C----CCHHHHHHHHHHcCCeeEeeC
Q 043022 340 G----IDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 340 ~----~~~~~~~~~l~~~~r~~~ev~ 361 (361)
+ ..+++|+++|+++|||++|||
T Consensus 335 ~~~~~~~a~~~~~~l~~~~Ry~~dvw 360 (360)
T cd06199 335 GGMDEEEAEAYLKELKKEKRYQRDVY 360 (360)
T ss_pred CCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 5 568899999999999999999
No 10
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=100.00 E-value=1.6e-45 Score=357.80 Aligned_cols=305 Identities=27% Similarity=0.443 Sum_probs=230.6
Q ss_pred ceecCCCcccccccceeeeeeec--cceeEEEeeecccCccchhhhcccc-cccccccccccCCCCeeEEEEeEeeecCC
Q 043022 22 TSIISPDRITFRKVPFYYKDVST--GGRVVSVRAQVTTEAPAKVEKESKK-MEEGVIVNKFKPKTPYIGRCLLNTKITGD 98 (361)
Q Consensus 22 ~~~p~p~~~t~~~~~~~y~di~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 98 (361)
.+.|+|.|+|++++|++|+||++ +++++..++.++++...+....... .+... ...|.... ..++.+ +..+
T Consensus 82 ~~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~s~~~~~-~~~~~~~~--~~~~~d---vL~~ 155 (416)
T cd06204 82 KKVPFPCPTTYRTALRHYLDITAPVSRQVLAALAQFAPDPEEKERLLKLASEGKDE-YAKWIVEP--HRNLLE---VLQD 155 (416)
T ss_pred cCCCCCCCccHHHHHHhhEEeCCCCcHHHHHHHHHHcCCHHHHHHHHHHHhcCHHH-HHHHHhhc--CCCHHH---HHHh
Confidence 35689999999999999999999 8999999999999887766321111 11100 01111100 001111 1111
Q ss_pred CCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCceecCc
Q 043022 99 DAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGV 178 (361)
Q Consensus 99 ~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~ 178 (361)
...+ ..........+.+.+ ++++|+|||+|+|.. +++.++|+|+++.|+++.++.+.|.
T Consensus 156 -----f~s~-----~~~~~pl~~ll~~lp--------~~~pR~YSIsSsp~~---~~~~i~ltV~~v~~~~~~~~~~~G~ 214 (416)
T cd06204 156 -----FPSA-----KPTPPPFDFLIELLP--------RLQPRYYSISSSSKV---HPNRIHITAVVVKYPTPTGRIIKGV 214 (416)
T ss_pred -----Cccc-----CCCCCCHHHHHHhCc--------cCCCcceeeccCccC---CCCEEEEEEEEEEeeCCCCCEEeee
Confidence 0000 000011122222322 558999999999965 6789999999999988877889999
Q ss_pred cchhhhcCC---------------------CCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhccc
Q 043022 179 CSNFLCDLK---------------------PGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHE 237 (361)
Q Consensus 179 ~S~~L~~l~---------------------~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~ 237 (361)
+|+||+++. +|+.|.+.+|.|. |.++.+..+|+||||+|||||||++|++++......
T Consensus 215 ~S~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~~~~g~-F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~ 293 (416)
T cd06204 215 ATNWLLALKPALNGEKPPTPYYLSGPRKKGGGSKVPVFVRRSN-FRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKES 293 (416)
T ss_pred ehHHHHhhhhhhcccccccccccccccccCCCCeEEEEEecCC-CCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhc
Confidence 999999955 8999999999996 667766678999999999999999999976543211
Q ss_pred ccccCCeEEEEEeccCC-cccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEE
Q 043022 238 DYKFNGLAWLFLGVPTS-SSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYV 316 (361)
Q Consensus 238 ~~~~~~~i~L~~g~r~~-~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~v 316 (361)
+. ..++++||||+|+. .|++|.+||++|.+.+. ++++++++||++. .++|||+++.+..+++++.+. +++.|
T Consensus 294 ~~-~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~-~~~l~~a~Sr~~~----~k~yVq~~i~~~~~~~~~~l~-~~~~v 366 (416)
T cd06204 294 GK-KVGPTLLFFGCRHPDEDFIYKDELEEYAKLGG-LLELVTAFSREQP----KKVYVQHRLAEHAEQVWELIN-EGAYI 366 (416)
T ss_pred cC-ccCCEEEEEcCCCCCcccchHHHHHHHHHcCC-ceEEEEEECcCCC----CCcchHHHHHHhHHHHHHHHH-cCCEE
Confidence 11 13689999999999 69999999999998766 8999999999754 678999999988888877776 57899
Q ss_pred EEECCcc-hHHHHHHHHHHHHHccC----CCHHHHHHHHHHcCCeeEeeC
Q 043022 317 YMCGLRG-MEKGIDDIMVSLAANDG----IDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 317 yvCGp~~-m~~~v~~~L~~~g~~~~----~~~~~~~~~l~~~~r~~~ev~ 361 (361)
|+|||+. |+++|.++|.++..+.+ ..+++|+++|+++|||++|||
T Consensus 367 YvCGp~~~M~~~V~~~L~~i~~~~~~~~~~~A~~~l~~l~~~gRy~~dvw 416 (416)
T cd06204 367 YVCGDAKNMARDVEKTLLEILAEQGGMTETEAEEYVKKLKTRGRYQEDVW 416 (416)
T ss_pred EEECCcccchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeEecC
Confidence 9999997 99999999999988765 458999999999999999999
No 11
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=100.00 E-value=6e-43 Score=321.01 Aligned_cols=257 Identities=39% Similarity=0.653 Sum_probs=214.7
Q ss_pred EeEeeecCCCCCCceEEEEeeCC--CccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeE
Q 043022 90 LLNTKITGDDAPGETWHMVFSTE--GEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY 167 (361)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~l~~~--~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~ 167 (361)
...+++++.+++.++++|+|+.+ ..++|.||||+.|.+++ ...+|+|||+|.|.. +.+.++|+|+..++
T Consensus 3 ~~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~------~~~~R~ySias~p~~---~~~~l~l~Ik~~~~ 73 (267)
T cd06182 3 TVNRKLTPPDSPRSTRHLEFDLSGNSVLKYQPGDHLGVIPPN------PLQPRYYSIASSPDV---DPGEVHLCVRVVSY 73 (267)
T ss_pred cccccccCCCCCCceEEEEEecCCCCcCccCCCCEEEEecCC------CCCCeeEeecCCCCC---CCCEEEEEEEEEEE
Confidence 44567888889999999999998 57889999999999864 225899999999863 35899999999887
Q ss_pred ecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEE
Q 043022 168 TNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWL 247 (361)
Q Consensus 168 ~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L 247 (361)
+...+..+.|.+|.+|+++++|+.|.+.||+|..|.++.+..+++||||||||||||++|+++++...... ...++++|
T Consensus 74 ~~~~~~~~~G~~S~~L~~lk~Gd~v~v~~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~-~~~~~v~l 152 (267)
T cd06182 74 EAPAGRIRKGVCSNFLAGLQLGAKVTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANG-KARGPAWL 152 (267)
T ss_pred ecCCCCeeccchhHHHhhCCCCCEEEEEEecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhcc-ccCCCEEE
Confidence 66555666799999999999999999999999556666555689999999999999999999987631000 01368999
Q ss_pred EEeccCC-cccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcc-hH
Q 043022 248 FLGVPTS-SSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRG-ME 325 (361)
Q Consensus 248 ~~g~r~~-~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~-m~ 325 (361)
|||+|+. +|++|.++|++|.+.+. ++++++++|+++.. ..+||++.+.+..+.+.+.+. ++..||+|||+. |+
T Consensus 153 ~~g~r~~~~d~~~~del~~~~~~~~-~~~~~~~~S~~~~~---~~~~v~~~l~~~~~~l~~~l~-~~~~vyvCGp~~~m~ 227 (267)
T cd06182 153 FFGCRNFASDYLYREELQEALKDGA-LTRLDVAFSREQAE---PKVYVQDKLKEHAEELRRLLN-EGAHIYVCGDAKSMA 227 (267)
T ss_pred EEeCCCCcccccHHHHHHHHHhCCC-cceEEEEEccCCCC---CceehHHHHHHhHHHHHHHHh-cCCEEEEECCcccch
Confidence 9999999 89999999999998766 99999999986532 468999988777666666564 456999999999 99
Q ss_pred HHHHHHHHHHHHccC----CCHHHHHHHHHHcCCeeEeeC
Q 043022 326 KGIDDIMVSLAANDG----IDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 326 ~~v~~~L~~~g~~~~----~~~~~~~~~l~~~~r~~~ev~ 361 (361)
+++.+.|.++..+.+ +.+++|+++|++.|||++|+|
T Consensus 228 ~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (267)
T cd06182 228 KDVEDALVKIIAKAGGVDESDAEEYLKELEDEGRYVEDVW 267 (267)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeEEecC
Confidence 999999999966643 779999999999999999999
No 12
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=100.00 E-value=3e-45 Score=354.14 Aligned_cols=304 Identities=25% Similarity=0.384 Sum_probs=223.4
Q ss_pred ceecCCCcccccccceeeeeeec--cceeEEEeeecccCccchhhhcccccccccccccccCCCCeeEEEEeEeeecCCC
Q 043022 22 TSIISPDRITFRKVPFYYKDVST--GGRVVSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDD 99 (361)
Q Consensus 22 ~~~p~p~~~t~~~~~~~y~di~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 99 (361)
-|.++|.|+|++++|++|+||++ +++++..++++|++...+.......+.++.. .|.. .+...-.++..+..+
T Consensus 80 ~~~~~p~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~--~~~~--~~~~~~~~~~dvL~~- 154 (398)
T cd06203 80 VPVHIPKVVTLRTILTWCLDIRAIPKKPLLRALAEFTSDDNEKRRLEELCSKQGSE--DYTD--FVRKRGLSLLDLLEA- 154 (398)
T ss_pred cCCCCCCCccHHHHHHHhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHcChhhHH--HHHH--HHhhcCCCHHHHHHh-
Confidence 35578899999999999999999 8999999999999887766322111111000 1111 000000011111111
Q ss_pred CCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCceecCcc
Q 043022 100 APGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVC 179 (361)
Q Consensus 100 ~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~ 179 (361)
...+ .++ ....+.+.+ ++++|+|||+|+|.. +++.++|+|+.+.+++ .|.+
T Consensus 155 ----f~s~------~~p--l~~ll~~lp--------~~~~R~YSIsSsp~~---~~~~i~l~v~~v~~~~------~G~~ 205 (398)
T cd06203 155 ----FPSC------RPP--LSLLIEHLP--------RLQPRPYSIASSPLE---GPGKLRFIFSVVEFPA------KGLC 205 (398)
T ss_pred ----CCCC------CCC--HHHHHHhCc--------cCCCcceeecCCccc---CCCeEEEEEEEEEecC------CChh
Confidence 0000 011 111122221 458999999999963 4689999999987432 4999
Q ss_pred chhhhcCC-----CCCEEEEEccCCCCcCCCCC-CCCcEEEEecCCchhhHHHHHHHHHhhcc-cccccCCeEEEEEecc
Q 043022 180 SNFLCDLK-----PGAEVKITGPVGKEMLMPRD-PNATVIMLATGTGIAPFRGFLWKMFFEKH-EDYKFNGLAWLFLGVP 252 (361)
Q Consensus 180 S~~L~~l~-----~G~~v~i~gP~G~~~~~~~~-~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~-~~~~~~~~i~L~~g~r 252 (361)
|+||++++ +|+.|.+.+|.++.|.+|.+ ..+|+||||+|||||||++|++++..... ......++++||||+|
T Consensus 206 S~~L~~l~~~~~~~G~~v~i~~~~~g~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R 285 (398)
T cd06203 206 TSWLESLCLSASSHGVKVPFYLRSSSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCR 285 (398)
T ss_pred hHHHHHhhhhhcCCCCEEEEEEecCCCcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCC
Confidence 99999977 99999999954445666655 56899999999999999999987664210 0011247899999999
Q ss_pred CC-cccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCc-chHHHHHH
Q 043022 253 TS-SSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLR-GMEKGIDD 330 (361)
Q Consensus 253 ~~-~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~-~m~~~v~~ 330 (361)
+. .|++|.+||++|.+++. ++++++++||++..+ +.++|||+.+.++.+++++.+...++.||+|||+ .|+++|++
T Consensus 286 ~~~~d~~y~~El~~~~~~~~-~~~~~~a~SRd~~~~-g~k~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~~ 363 (398)
T cd06203 286 HRDRDYLFRDELEEFLEEGI-LTRLIVAFSRDENDG-STPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRD 363 (398)
T ss_pred CCCcchhHHHHHHHHHHcCC-CceEEEEECCCCCCC-CCceecchHHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHHH
Confidence 99 69999999999998876 788999999986543 5789999999998888888765468999999985 79999999
Q ss_pred HHHHHHHccC----CCHHHHHHHHHHcCCeeEeeC
Q 043022 331 IMVSLAANDG----IDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 331 ~L~~~g~~~~----~~~~~~~~~l~~~~r~~~ev~ 361 (361)
+|.++..+.+ ..+++|+++|+++|||++|||
T Consensus 364 ~l~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~dvw 398 (398)
T cd06203 364 TFVDILSKELGLDKLEAKKLLARLRKEDRYLEDVW 398 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 9999888764 568899999999999999999
No 13
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=100.00 E-value=2.2e-44 Score=363.30 Aligned_cols=286 Identities=27% Similarity=0.476 Sum_probs=231.3
Q ss_pred CCcccccccceeeeeeec-cceeEEEeeecccCccchhhhcccccccccccccccCCCCeeEEEEeEeeecCCCCCCceE
Q 043022 27 PDRITFRKVPFYYKDVST-GGRVVSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETW 105 (361)
Q Consensus 27 p~~~t~~~~~~~y~di~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 105 (361)
..++|++++|++|+||.. .++++..+++++.+...+.. + .+.+. . ..|... .. +.
T Consensus 304 ~~~~tl~~~l~~~~dl~~~~~~~l~~la~~~~~~~l~~~-~-~~~~~-~--~~y~~~-------~~------------~~ 359 (597)
T TIGR01931 304 GKTIPLFEALITHFELTQNTKPLLKAYAELTGNKELKAL-I-ADNEK-L--KAYIQN-------TP------------LI 359 (597)
T ss_pred CCCcCHHHHHHhceeCCCCCHHHHHHHHHhcCCHHHHHH-h-cCHHH-H--HHHHcC-------CC------------HH
Confidence 457899999999999999 88999999999877654432 1 12111 1 112110 01 11
Q ss_pred EEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCceecCccchhhhc
Q 043022 106 HMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCD 185 (361)
Q Consensus 106 ~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~ 185 (361)
.+.-.. +..|.||||+.+.++ +++|+|||+|+|.. +++.++|+|+++.|.. .++.+.|.+|+||++
T Consensus 360 dvl~~f--p~~~~~gq~v~ll~~--------~~~R~YSIaSsp~~---~~~~l~ltV~~v~~~~-~~~~~~G~~S~~L~~ 425 (597)
T TIGR01931 360 DLIRDY--PADLDAEQLISLLRP--------LTPRLYSISSSQSE---VGDEVHLTVGVVRYQA-HGRARLGGASGFLAE 425 (597)
T ss_pred HHHHHC--CCCCCHHHHHHhCcc--------cCCceeeeccCccc---CCCEEEEEEEEEEecC-CCCccccchhHHHHh
Confidence 111111 257899999999974 37999999999964 5689999999987763 456778999999998
Q ss_pred -CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccC-CcccccHHHH
Q 043022 186 -LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPT-SSSLLYKEEF 263 (361)
Q Consensus 186 -l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~-~~d~~~~~el 263 (361)
+++|++|.|.+|.|..|.+|.+..+|+||||+|||||||++|++++...+. .++++||||+|+ ..|++|.+||
T Consensus 426 ~l~~Gd~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~-----~g~~~LffG~R~~~~D~ly~~El 500 (597)
T TIGR01931 426 RLKEGDTVPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQERAEDGA-----KGKNWLFFGNPHFTTDFLYQVEW 500 (597)
T ss_pred hCCCCCEEEEEEeeCCcccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHccC-----CCCEEEEECCCCCCcchhHHHHH
Confidence 999999999987776678877777899999999999999999998775432 378999999999 5699999999
Q ss_pred HHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEEC-CcchHHHHHHHHHHHHHccC--
Q 043022 264 EKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCG-LRGMEKGIDDIMVSLAANDG-- 340 (361)
Q Consensus 264 ~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCG-p~~m~~~v~~~L~~~g~~~~-- 340 (361)
++|.+++. .+++++++||++. .++|||++|.+..+++++++. ++++||+|| |+.|+++|.++|.++..+.+
T Consensus 501 ~~~~~~~~-l~~l~~afSRd~~----~k~yVqd~l~e~~~~~~~~l~-~~a~vYvCG~~~~M~~~V~~~L~~i~~~~g~~ 574 (597)
T TIGR01931 501 QNYLKKGV-LTKMDLAFSRDQA----EKIYVQHRIREQGAELWQWLQ-EGAHIYVCGDAKKMAKDVHQALLDIIAKEGHL 574 (597)
T ss_pred HHHHHcCC-CceeEEEEecCCC----CCccHHHHHHHhHHHHHHHHh-CCcEEEEECCCccccHHHHHHHHHHHHHhCCC
Confidence 99998876 7789999999643 689999999998888888876 579999999 77999999999999988865
Q ss_pred --CCHHHHHHHHHHcCCeeEeeC
Q 043022 341 --IDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 341 --~~~~~~~~~l~~~~r~~~ev~ 361 (361)
..+++|+++|+++|||++|||
T Consensus 575 s~~~A~~~l~~l~~~~RY~~DVy 597 (597)
T TIGR01931 575 DAEEAEEYLTDLRVEKRYQRDVY 597 (597)
T ss_pred CHHHHHHHHHHHHHcCCeeeecC
Confidence 568899999999999999999
No 14
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-42 Score=340.51 Aligned_cols=268 Identities=35% Similarity=0.640 Sum_probs=239.5
Q ss_pred ccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCCC------------C--------C----
Q 043022 79 FKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGVD------------K--------N---- 133 (361)
Q Consensus 79 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~~------------~--------~---- 133 (361)
+.+...+.+.+..+.+++...+..+++++.|+.+. .+.|.||+++.|.+.+.. . .
T Consensus 216 ~~~~~~~~a~~~~n~~l~~~~~~k~~rhie~~l~~s~~~y~~GD~lgV~p~N~~~lV~~~l~~~gl~~~~~v~~~~~~~~ 295 (587)
T COG0369 216 YSKPAPSVAILLENRKLTGRDSDKDVRHIELDLPDSGLRYEPGDALGVWPENDPELVDEFLELLGLDPEEPVTVDGETLP 295 (587)
T ss_pred ccccCcceeEeeccccCCccccCceeEEEEeecccccceeCCCCeeEEcCCCCHHHHHHHHHHcCCCCCceeccCCCcch
Confidence 45677899999999999999889999999999998 788999999999976532 0 0
Q ss_pred ------------------------------------------------------------------------CCCCCcee
Q 043022 134 ------------------------------------------------------------------------AKPHKLRL 141 (361)
Q Consensus 134 ------------------------------------------------------------------------~~~~~~R~ 141 (361)
..++.+|.
T Consensus 296 ~~~~l~~~~e~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~d~L~~f~~~~l~~~~li~~l~~lkPR~ 375 (587)
T COG0369 296 LVEALKSHFEFTSAPKSLLENLAHFAGQEELRRLLEQLDIADLQDYAKRRTLIDVLRDFPPAKLPAEELIDLLPPLKPRL 375 (587)
T ss_pred HHHHHHHheecccchHHHHHHHHHhcCCHHHHHHHHhhhhHHHHhhhccccHHHHHhhccccCCCHHHHHHhCccCCCee
Confidence 04568999
Q ss_pred cccccCCCCCCCCCcEEEEEEEEeeEecCCCceecCccchhhhcCCC-CCEEEEEccCCCCcCCCCCCCCcEEEEecCCc
Q 043022 142 YSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKP-GAEVKITGPVGKEMLMPRDPNATVIMLATGTG 220 (361)
Q Consensus 142 ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~-G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtG 220 (361)
|||+|++.. ++++++++|..+.|+.. ++.+.|.||+||+++.+ |+.|.|....++.|.+|.++.+||||||.|||
T Consensus 376 YSIsSs~~~---~~~~vhltV~vV~y~~~-~~~r~GvcS~~L~~~~~~g~~i~v~v~~n~nf~lp~~~~~PiIMIG~GTG 451 (587)
T COG0369 376 YSIASSPGV---SPDEVHLTVGVVRYQAE-GRERYGVCSGYLADLLEEGDTIPVFVQPNKNFRLPEDPETPIIMIGPGTG 451 (587)
T ss_pred eEeccCCCC---CCCeEEEEEEEEEeccC-CCcccccchHHHHhhhcCCCeEEEEeccCCccccCCCCCCceEEEcCCCC
Confidence 999999986 77999999999999887 34889999999999555 99999999989889999888899999999999
Q ss_pred hhhHHHHHHHHHhhcccccccCCeEEEEEeccCCc-ccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHH
Q 043022 221 IAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMA 299 (361)
Q Consensus 221 iaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~ 299 (361)
||||++++++....+. .+++|||||+|+.+ |++|++||+++..++- ++++.+++||++. ++.||||+|+
T Consensus 452 IAPFRafvq~r~~~~~-----~gk~wLfFG~R~~~~DfLY~~Ewe~~~~~G~-~~~l~~AfSRdq~----~KiYVQd~lr 521 (587)
T COG0369 452 IAPFRAFVQERAANGA-----EGKNWLFFGCRHFTEDFLYQEEWEEYLKDGV-LTRLDLAFSRDQE----EKIYVQDRLR 521 (587)
T ss_pred chhHHHHHHHHHhccc-----cCceEEEecCCCCccchhhHHHHHHHHhcCC-ceeEEEEEeecCC----CCccHHHHHH
Confidence 9999999998876653 25899999999965 9999999999988765 8999999999985 8999999999
Q ss_pred HhHHHHHHHhccCCeEEEEEC-CcchHHHHHHHHHHHHHccC----CCHHHHHHHHHHcCCeeEeeC
Q 043022 300 EYANELWELLKKDNTYVYMCG-LRGMEKGIDDIMVSLAANDG----IDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 300 ~~~~~~~~~l~~~~~~vyvCG-p~~m~~~v~~~L~~~g~~~~----~~~~~~~~~l~~~~r~~~ev~ 361 (361)
++.++++++++ +++++|||| ...|.++|.++|.++..+.+ ..+.++++.|++.+||++|||
T Consensus 522 e~~del~~~l~-~ga~~YVCGd~~~Ma~dV~~AL~~il~~~g~~s~eea~~~l~~lk~~~RY~~DVy 587 (587)
T COG0369 522 EQADELWEWLE-EGAHIYVCGDAKGMAKDVEEALLDILAKEGGLSREEAEEYLKELKKEGRYQRDVY 587 (587)
T ss_pred HhHHHHHHHHH-CCCEEEEeCCCccchHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCceeeecC
Confidence 99999999999 569999999 67999999999999999877 568899999999999999999
No 15
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=100.00 E-value=1.4e-41 Score=308.71 Aligned_cols=236 Identities=23% Similarity=0.402 Sum_probs=193.1
Q ss_pred EeeecCCCCCCceEEEEeeCC-CccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecC
Q 043022 92 NTKITGDDAPGETWHMVFSTE-GEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNE 170 (361)
Q Consensus 92 ~~~~~~~~~~~~~~~l~l~~~-~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~ 170 (361)
...++++...+++++|+|+.+ ..++|+||||+.|.+++ ...+|+|||+|.|. ++.++|+|++++..
T Consensus 6 ~~~~~~~~~~~~v~~l~l~~~~~~~~f~pGQ~v~l~~~~------~~~~R~YSIas~p~-----~~~l~l~Vk~~~~~-- 72 (245)
T cd06200 6 RVLLNPGSQGAPLWRLRLTPPDAGAQWQAGDIAEIGPRH------PLPHREYSIASLPA-----DGALELLVRQVRHA-- 72 (245)
T ss_pred eeecCCCCCCCceEEEEEecCCCCCCccCCcEEEecCCC------CCCCcceEeccCCC-----CCEEEEEEEEeccC--
Confidence 334444433346999999998 57789999999999753 23689999999983 57899999997510
Q ss_pred CCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEE
Q 043022 171 NGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFL 249 (361)
Q Consensus 171 ~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~ 249 (361)
..+.|.+|+||++ +++|++|.|.||.|..|.++. ..+|+||||||||||||++|++++.... .++++|||
T Consensus 73 --~~~~G~~S~~L~~~~~~Gd~v~i~gp~gg~F~~~~-~~~~~vlIAgGtGIaP~~s~l~~~~~~~------~~~~~l~~ 143 (245)
T cd06200 73 --DGGLGLGSGWLTRHAPIGASVALRLRENPGFHLPD-DGRPLILIGNGTGLAGLRSHLRARARAG------RHRNWLLF 143 (245)
T ss_pred --CCCCeeechhhhhCCCCCCEEEEEecCCCcccCCC-CCCCEEEEecCcChHHHHHHHHHHHhcc------CCCeEEEE
Confidence 0012889999998 699999999998877777764 4589999999999999999999887543 25789999
Q ss_pred eccCCc-ccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCc-chHHH
Q 043022 250 GVPTSS-SLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLR-GMEKG 327 (361)
Q Consensus 250 g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~-~m~~~ 327 (361)
|+|+.+ |++|.+||++|.++++ ++++++++|+++. .++||++.+.+..+++.+.+. .+..+|+|||+ +|+++
T Consensus 144 g~r~~~~d~~~~~el~~~~~~~~-~~~~~~~~s~~~~----~~~~v~~~l~~~~~~~~~~~~-~~~~vy~CGp~~~m~~~ 217 (245)
T cd06200 144 GERQAAHDFFCREELEAWQAAGH-LARLDLAFSRDQA----QKRYVQDRLRAAADELRAWVA-EGAAIYVCGSLQGMAPG 217 (245)
T ss_pred ecCCccccHhHHHHHHHHHHCCC-cceEEEEEccCCC----CCcchHHHHHHhHHHHHHHHH-CCcEEEEECCchhhhHH
Confidence 999985 9999999999998877 8999999998653 578999999887766655554 46899999999 99999
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHHcCCeeEeeC
Q 043022 328 IDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 328 v~~~L~~~g~~~~~~~~~~~~~l~~~~r~~~ev~ 361 (361)
+.+.|.++... +.++.|+++|||++|+|
T Consensus 218 v~~~l~~~~~~------~~~~~~~~~~r~~~d~~ 245 (245)
T cd06200 218 VDAVLDEILGE------EAVEALLAAGRYRRDVY 245 (245)
T ss_pred HHHHHHHHHHH------HHHHHHHHCCCeEEecC
Confidence 99999998764 35889999999999999
No 16
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=100.00 E-value=1.1e-41 Score=342.05 Aligned_cols=269 Identities=30% Similarity=0.548 Sum_probs=232.6
Q ss_pred cccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCC-CccccCCCcEEEEecCCCC-------------CC----------
Q 043022 78 KFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTE-GEVPYKEGQSIGVIADGVD-------------KN---------- 133 (361)
Q Consensus 78 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~-~~l~~~pGQ~v~l~~~~~~-------------~~---------- 133 (361)
.|.+..++.++|+.+.+++...+..++++++|+.. ..+.|+||+++.|.+.+.. .+
T Consensus 231 ~~~~~~p~~a~v~~n~~Lt~~~~~k~~rhie~dl~~~~l~Y~~GD~lgV~P~N~~~~V~~~l~~l~l~~~~~v~~~~~~~ 310 (600)
T PRK10953 231 PYSKEAPLTASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTL 310 (600)
T ss_pred CCCCCCCeEEEEEEEeecCCCCCCceEEEEEEecCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEeCCCCC
Confidence 45567789999999999999888889999999985 4688999999999876521 00
Q ss_pred ----------------------------------------------------------------------CCCCCceecc
Q 043022 134 ----------------------------------------------------------------------AKPHKLRLYS 143 (361)
Q Consensus 134 ----------------------------------------------------------------------~~~~~~R~yS 143 (361)
-.++++|+||
T Consensus 311 tl~~~l~~~~dl~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~dvL~~f~~~~~~~q~l~ll~~l~pR~YS 390 (600)
T PRK10953 311 PLAEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAALQHYAATTPIVDMVRFAPAQLDAEQLIGLLRPLTPRLYS 390 (600)
T ss_pred CHHHHHHHhcccCCCcHHHHHHHHHhCCCHHHHHHhcCHHHHHHHhcCCCHHHHHHhCCCCCCHHHHHHhCCCCCCeeee
Confidence 0245789999
Q ss_pred cccCCCCCCCCCcEEEEEEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchh
Q 043022 144 IASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIA 222 (361)
Q Consensus 144 ias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGia 222 (361)
|+|+|.. +++.++|+|+.+.|.. .++.+.|.+|.||++ +++|++|.|.+|.|+.|.+|.++.+|+||||+|||||
T Consensus 391 IaSsp~~---~~~~v~ltv~~v~~~~-~g~~~~G~~S~~L~~~l~~Gd~v~v~~~~~~~F~lp~~~~~piImIg~GTGIA 466 (600)
T PRK10953 391 IASSQAE---VENEVHITVGVVRYDI-EGRARAGGASSFLADRLEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIA 466 (600)
T ss_pred cccCCCC---CCCeEEEEEEEEEeec-CCCCcCceEhhhhhhcCCCCCEEEEEeccCCcccCCCCCCCCEEEEecCcCcH
Confidence 9999964 5789999999888764 466789999999997 9999999999998877888877778999999999999
Q ss_pred hHHHHHHHHHhhcccccccCCeEEEEEeccCC-cccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHh
Q 043022 223 PFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTS-SSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEY 301 (361)
Q Consensus 223 P~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~-~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~ 301 (361)
||++|++++...+. .++++||||+|+. .|++|.+||++|.+++. ..++++++||++. .+.|||++|.++
T Consensus 467 Pfrsflq~r~~~~~-----~~~~~LffG~R~~~~D~lY~~El~~~~~~g~-l~~l~~afSRd~~----~k~YVQ~~l~e~ 536 (600)
T PRK10953 467 PFRAFMQQRAADGA-----PGKNWLFFGNPHFTEDFLYQVEWQRYVKEGL-LTRIDLAWSRDQK----EKIYVQDKLREQ 536 (600)
T ss_pred HHHHHHHHHHHcCC-----CCCeEEEeeccCCccchhHHHHHHHHHHcCC-cceEEEEECCCCC----CCCcHHHHHHHH
Confidence 99999998765432 3789999999995 59999999999998875 6779999999864 789999999999
Q ss_pred HHHHHHHhccCCeEEEEECCc-chHHHHHHHHHHHHHccC----CCHHHHHHHHHHcCCeeEeeC
Q 043022 302 ANELWELLKKDNTYVYMCGLR-GMEKGIDDIMVSLAANDG----IDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 302 ~~~~~~~l~~~~~~vyvCGp~-~m~~~v~~~L~~~g~~~~----~~~~~~~~~l~~~~r~~~ev~ 361 (361)
.+++++++. ++++|||||++ .|+++|+++|.++..+++ ..+++|+++|+++|||++|||
T Consensus 537 ~~~l~~~l~-~ga~~YVCG~~~~M~~~V~~~L~~i~~~~g~~~~e~A~~~l~~l~~~~RY~~Dvy 600 (600)
T PRK10953 537 GAELWRWIN-DGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 600 (600)
T ss_pred HHHHHHHHH-CCcEEEEECCCccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 999999987 68999999997 699999999999988865 568899999999999999999
No 17
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=100.00 E-value=5.1e-41 Score=318.87 Aligned_cols=253 Identities=20% Similarity=0.295 Sum_probs=210.6
Q ss_pred cceeEEEeeecccCccchhhhcccccccccccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCC---CccccCCCc
Q 043022 45 GGRVVSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTE---GEVPYKEGQ 121 (361)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~---~~l~~~pGQ 121 (361)
..++..++|+..+.++..++. ....+ . ....+.+.+.++|++++.++++ ++.|+|+.+ +.+.|+|||
T Consensus 72 ~~~g~~L~C~~~~~~d~~i~~-~~~~~--~--~~~~~~~~~~~~V~~i~~~s~d-----i~~l~l~~~~~~~~~~~~pGQ 141 (340)
T PRK11872 72 LAQRKMLACQTRVKSDAAFYF-DFDSS--L--CNAGDTLKISGVVTAVELVSET-----TAILHLDASAHGRQLDFLPGQ 141 (340)
T ss_pred HhCCeEEEeeCEECCceEEEe-cCccc--c--ccccccceeeEEEEEEEecCCC-----eEEEEEEcCCCCCccCcCCCC
Confidence 567889999999999987762 11111 1 0113556888999999999999 999999986 467899999
Q ss_pred EEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCC
Q 043022 122 SIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGK 200 (361)
Q Consensus 122 ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~ 200 (361)
|+.|.+++.. ..|+|||+|.|. +.+.++|+||+++ +|.+|+||++ +++|+.|.|+||+|.
T Consensus 142 ~v~l~~~~~~------~~R~ySias~p~----~~~~l~~~ik~~~---------~G~~s~~L~~~l~~G~~v~i~gP~G~ 202 (340)
T PRK11872 142 YARLQIPGTD------DWRSYSFANRPN----ATNQLQFLIRLLP---------DGVMSNYLRERCQVGDEILFEAPLGA 202 (340)
T ss_pred EEEEEeCCCC------ceeecccCCCCC----CCCeEEEEEEECC---------CCcchhhHhhCCCCCCEEEEEcCcce
Confidence 9999987532 479999999986 5689999999987 7999999985 999999999999999
Q ss_pred CcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEe
Q 043022 201 EMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAV 280 (361)
Q Consensus 201 ~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~ 280 (361)
+++. ...+++||||||||||||++|+++++.... .++++||||+|+.+|++|.++|++|+++++ +|+++.++
T Consensus 203 f~l~--~~~~~~vliagGtGiaP~~s~l~~~~~~~~-----~~~v~l~~g~r~~~dl~~~~el~~~~~~~~-~~~~~~~~ 274 (340)
T PRK11872 203 FYLR--EVERPLVFVAGGTGLSAFLGMLDELAEQGC-----SPPVHLYYGVRHAADLCELQRLAAYAERLP-NFRYHPVV 274 (340)
T ss_pred eEeC--CCCCcEEEEeCCcCccHHHHHHHHHHHcCC-----CCcEEEEEecCChHHhccHHHHHHHHHHCC-CcEEEEEE
Confidence 7653 234799999999999999999999876432 268999999999999999999999999988 89999999
Q ss_pred cCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHccC
Q 043022 281 SREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDG 340 (361)
Q Consensus 281 s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~ 340 (361)
+++++.|.|.+++|++.+.+.. +......||+|||++|++++.+.|.+.|.+..
T Consensus 275 s~~~~~~~g~~g~v~~~l~~~~------l~~~~~~vy~CGp~~mv~~~~~~L~~~Gv~~~ 328 (340)
T PRK11872 275 SKASADWQGKRGYIHEHFDKAQ------LRDQAFDMYLCGPPPMVEAVKQWLDEQALENY 328 (340)
T ss_pred eCCCCcCCCceeeccHHHHHhh------cCcCCCEEEEeCCHHHHHHHHHHHHHcCCCHH
Confidence 9888889999999998776421 22134679999999999999999999988753
No 18
>PRK06214 sulfite reductase; Provisional
Probab=100.00 E-value=4.1e-40 Score=324.36 Aligned_cols=270 Identities=33% Similarity=0.580 Sum_probs=224.6
Q ss_pred ccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCCC-------------C----------
Q 043022 77 NKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGVD-------------K---------- 132 (361)
Q Consensus 77 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~~-------------~---------- 132 (361)
..|....++.++|+++.+++......++++|+|+.+. .+.|+||+++.|.+.+.. .
T Consensus 161 ~~~~~~~p~~a~v~~n~~Lt~~~~~~~~~hle~dl~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~~~~tlr 240 (530)
T PRK06214 161 LGTSRDNPVEATFLSRRRLNKPGSEKETWHVEIDLAGSGLDYEVGDSLGLFPANDPALVDAVIAALGAPPEFPIGGKTLR 240 (530)
T ss_pred CccCcCCCEEEEEEeEEEcCCCCCCceEEEEEEecCCCCCccCCCCEEEEeccCCHHHHHHHHHHhCCCccCccCCccHH
Confidence 3466778899999999999998878889999999864 688999999999765431 0
Q ss_pred -----------------------------------------CC----------------------------CCCCceecc
Q 043022 133 -----------------------------------------NA----------------------------KPHKLRLYS 143 (361)
Q Consensus 133 -----------------------------------------~~----------------------------~~~~~R~yS 143 (361)
.+ .++++|+||
T Consensus 241 ~~L~~~~Dl~~~p~~~~~~la~~~~~~~~~~l~~L~~~~~~~~~~~~~~vldvL~~fp~~~~~~~~lle~lp~l~pR~YS 320 (530)
T PRK06214 241 EALLEDVSLGPAPDGLFELLSYITGGAARKKARALAAGEDPDGDAATLDVLAALEKFPGIRPDPEAFVEALDPLQPRLYS 320 (530)
T ss_pred HHHHHheeccCCCHHHHHHHHHhCCcHHHHHHHHhhcccChhhhhhhCcHHHHHHhCCCCCCCHHHHHhhcCCCCcEEEE
Confidence 00 345789999
Q ss_pred cccCCCCCCCCCcEEEEEEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchh
Q 043022 144 IASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIA 222 (361)
Q Consensus 144 ias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGia 222 (361)
|+|+|.. +++.++|+|+++.|.. .++.+.|.+|+||++ +++|+.|.+.++.+..|.++.+..+|+||||+|||||
T Consensus 321 ISSsP~~---~~~~i~ltV~~V~~~~-~~~~~~G~~S~~L~~~l~~Gd~V~v~i~~~~gF~lp~~~~~PiImIg~GTGIA 396 (530)
T PRK06214 321 ISSSPKA---TPGRVSLTVDAVRYEI-GSRLRLGVASTFLGERLAPGTRVRVYVQKAHGFALPADPNTPIIMVGPGTGIA 396 (530)
T ss_pred eccCCcC---CCCEEEEEEEEEeecc-CCccccchhhHHHHhcCCCCCEEEEEecCCCCCccCCCCCCCEEEEcCCeeHH
Confidence 9999964 4789999999987763 455678999999985 9999999987633322677766678999999999999
Q ss_pred hHHHHHHHHHhhcccccccCCeEEEEEeccCC-cccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHh
Q 043022 223 PFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTS-SSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEY 301 (361)
Q Consensus 223 P~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~-~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~ 301 (361)
||++|++++..... .++++||||+|+. .|++|.+||++|.+.+. ++++++++||++. .+.|||++|.+.
T Consensus 397 PfrsfLq~r~~~~~-----~g~~~LffG~R~~~~D~ly~dEL~~l~~~g~-l~~l~~afSRd~~----~k~YVQ~~L~e~ 466 (530)
T PRK06214 397 PFRAFLHERAATKA-----PGRNWLFFGHQRSATDFFYEDELNGLKAAGV-LTRLSLAWSRDGE----EKTYVQDRMREN 466 (530)
T ss_pred HHHHHHHHHHHhcC-----CCCeEEEEEecCChhhhHHHHHHHHHHHhCC-ceEEEEEEecCCC----CCCchhhHHHHH
Confidence 99999997664332 3689999999775 59999999999998766 7889999999764 678999999998
Q ss_pred HHHHHHHhccCCeEEEEECCcc-hHHHHHHHHHHHHHccC----CCHHHHHHHHHHcCCeeEeeC
Q 043022 302 ANELWELLKKDNTYVYMCGLRG-MEKGIDDIMVSLAANDG----IDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 302 ~~~~~~~l~~~~~~vyvCGp~~-m~~~v~~~L~~~g~~~~----~~~~~~~~~l~~~~r~~~ev~ 361 (361)
.+++++++. ++++||||||.. |.++|+++|.++..+++ .++++|+++|+++|||++|||
T Consensus 467 ~~~l~~~l~-~~a~iYVCGp~~~M~~~V~~~L~~il~~~g~~s~~~A~~~l~~l~~~gRY~~Dvw 530 (530)
T PRK06214 467 GAELWKWLE-EGAHFYVCGDAKRMAKDVERALVDIVAQFGGRSPDEAVAFVAELKKAGRYQADVY 530 (530)
T ss_pred HHHHHhhhc-CCcEEEEeCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 888888876 689999999975 77999999999988875 567889999999999999999
No 19
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=100.00 E-value=1.2e-40 Score=316.99 Aligned_cols=252 Identities=22% Similarity=0.285 Sum_probs=207.7
Q ss_pred cceeEEEeeecccCccchhhhcccccccccccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC--ccccCCCcE
Q 043022 45 GGRVVSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG--EVPYKEGQS 122 (361)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~--~l~~~pGQ~ 122 (361)
..+++.++|+..+.++++++....... ...|.+.+.++|++++.++++ ++.|+|+.+. .+.|+||||
T Consensus 69 ~~~g~~L~C~~~~~~d~~i~~~~~~~~------~~~~~~~~~~~V~~~~~~~~d-----~~~l~l~~~~~~~~~~~pGQf 137 (339)
T PRK07609 69 RAAGEALTCCAKPLSDLVLEAREVPAL------GDIPVKKLPCRVASLERVAGD-----VMRLKLRLPATERLQYLAGQY 137 (339)
T ss_pred HhCCcEEEeeCEECCCEEEEecccccc------ccccceEEEEEEEEEEcCCCc-----EEEEEEEcCCCCCCccCCCCe
Confidence 456788999999999988864222111 113566789999999999999 9999999863 578999999
Q ss_pred EEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCC
Q 043022 123 IGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKE 201 (361)
Q Consensus 123 v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~ 201 (361)
+.|.+++. ..|+|||+|.|. +.+.++|+|++++ +|.+|+||++ +++|+.|.+.||+|.+
T Consensus 138 v~l~~~~~-------~~R~ySias~p~----~~~~l~~~ik~~~---------~G~~s~~l~~~l~~G~~v~v~gP~G~~ 197 (339)
T PRK07609 138 IEFILKDG-------KRRSYSIANAPH----SGGPLELHIRHMP---------GGVFTDHVFGALKERDILRIEGPLGTF 197 (339)
T ss_pred EEEECCCC-------ceeeeecCCCCC----CCCEEEEEEEecC---------CCccHHHHHHhccCCCEEEEEcCceeE
Confidence 99998642 479999999986 5589999999986 8999999985 9999999999999997
Q ss_pred cCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEec
Q 043022 202 MLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVS 281 (361)
Q Consensus 202 ~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s 281 (361)
++.+ ...+++|||||||||||+++|+++++..+. .++++||||+|+.+|+++.++|++|.++++ +|+++++++
T Consensus 198 ~~~~-~~~~~ivlIagGtGiaP~~s~l~~~~~~~~-----~~~i~l~~g~r~~~dl~~~e~l~~~~~~~~-~~~~~~~~s 270 (339)
T PRK07609 198 FLRE-DSDKPIVLLASGTGFAPIKSIVEHLRAKGI-----QRPVTLYWGARRPEDLYLSALAEQWAEELP-NFRYVPVVS 270 (339)
T ss_pred EecC-CCCCCEEEEecCcChhHHHHHHHHHHhcCC-----CCcEEEEEecCChHHhccHHHHHHHHHhCC-CeEEEEEec
Confidence 6543 456799999999999999999999886432 268999999999999999999999998888 899999999
Q ss_pred CC--cccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHccC
Q 043022 282 RE--QKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDG 340 (361)
Q Consensus 282 ~~--~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~ 340 (361)
++ ++.|.+.++++++.+.+... .+ .+..+|+|||+.|++++.+.|.+.|.+.+
T Consensus 271 ~~~~~~~~~g~~G~v~~~~~~~~~----~~--~~~~vy~CGp~~m~~~~~~~l~~~G~~~~ 325 (339)
T PRK07609 271 DALDDDAWTGRTGFVHQAVLEDFP----DL--SGHQVYACGSPVMVYAARDDFVAAGLPAE 325 (339)
T ss_pred CCCCCCCccCccCcHHHHHHhhcc----cc--cCCEEEEECCHHHHHHHHHHHHHcCCCHH
Confidence 74 45677888888877654321 12 36789999999999999999999887643
No 20
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=100.00 E-value=1.7e-39 Score=301.64 Aligned_cols=237 Identities=25% Similarity=0.445 Sum_probs=196.5
Q ss_pred CCeeEEEEeEeeecCCCCCCceEEEEeeCCC-------ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCC
Q 043022 83 TPYIGRCLLNTKITGDDAPGETWHMVFSTEG-------EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDS 155 (361)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-------~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~ 155 (361)
....++|++++.++++. ..+++.|+|+.+. ..+|.||||+.|.+++. ...|+|||+|.|. +
T Consensus 44 ~~~~~~l~~~~~~~~~~-~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~g~------~~~R~YSias~p~-----~ 111 (289)
T cd06201 44 RTKALELVERKDYGAAV-QAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPPGS------DVPRFYSLASSSS-----D 111 (289)
T ss_pred CccceEEEeeeecCCCC-CCccEEEEEeCCCcccccCCCCCcCccCEEEEecCCC------CCCceEecCCCCC-----C
Confidence 46788999999999533 2349999999876 46699999999986542 2579999999983 4
Q ss_pred cEEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEc-cCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhh
Q 043022 156 KTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITG-PVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFE 234 (361)
Q Consensus 156 ~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~g-P~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~ 234 (361)
+.++|+||+++ .|.+|.||+++++|++|.+.+ |.|. |.++ +..+++||||||||||||++|+++..
T Consensus 112 g~l~l~Vk~~~---------~G~~S~~L~~l~~Gd~v~v~~~~~g~-F~~~-~~~~~lvlIAgGtGIaP~~s~l~~~~-- 178 (289)
T cd06201 112 GFLEICVRKHP---------GGLCSGYLHGLKPGDTIKAFIRPNPS-FRPA-KGAAPVILIGAGTGIAPLAGFIRANA-- 178 (289)
T ss_pred CeEEEEEEeCC---------CccchhhHhhCCCcCEEEEEeccCCC-ccCC-CCCCCEEEEecCcCHHHHHHHHHhhh--
Confidence 78999999876 799999999999999999985 6665 5544 44579999999999999999998752
Q ss_pred cccccccCCeEEEEEeccCCc-ccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCC
Q 043022 235 KHEDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDN 313 (361)
Q Consensus 235 ~~~~~~~~~~i~L~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~ 313 (361)
. .++++|+||+|+.+ |++|.+||++|.++++ ++++++++|++. .++||++.+....+.+...+. ++
T Consensus 179 ~------~~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~-~~~~~~~~s~~~-----~~g~v~~~l~~~~~~l~~~~~-~~ 245 (289)
T cd06201 179 A------RRPMHLYWGGRDPASDFLYEDELDQYLADGR-LTQLHTAFSRTP-----DGAYVQDRLRADAERLRRLIE-DG 245 (289)
T ss_pred c------cCCEEEEEEecCcccchHHHHHHHHHHHcCC-CceEEEEECCCC-----CcccchhHHHHhHHHHHHHHH-CC
Confidence 1 26899999999985 8999999999998877 888888888763 468999988776666655554 57
Q ss_pred eEEEEECCcchHHHHHHHHHHHHHccCCCHHHHHHHHHHcCCeeEeeC
Q 043022 314 TYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 314 ~~vyvCGp~~m~~~v~~~L~~~g~~~~~~~~~~~~~l~~~~r~~~ev~ 361 (361)
..||+|||+.|++++.+.|.++..+++.. +..|++.|||.+|||
T Consensus 246 ~~vyiCGp~~M~~~v~~~L~~i~~~~~~~----~~~~~~~g~~~~d~y 289 (289)
T cd06201 246 AQIMVCGSRAMAQGVAAVLEEILAPQPLS----LDELKLQGRYAEDVY 289 (289)
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHHcCcC----HHHHHHCCCEEeecC
Confidence 89999999999999999999998776533 678888999999999
No 21
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=100.00 E-value=1.1e-38 Score=310.06 Aligned_cols=267 Identities=22% Similarity=0.376 Sum_probs=209.6
Q ss_pred cceeEEEeeecccCccchhhhcccccccccccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCC--CccccCCCcE
Q 043022 45 GGRVVSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTE--GEVPYKEGQS 122 (361)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~--~~l~~~pGQ~ 122 (361)
..+..+++||..+.++..++.. .+ . .+...+.++|++++.++++ ++.++|+.+ .+++|+||||
T Consensus 104 ~~~g~rLaCq~~~~~d~~ie~~---~~--~-----~~~~~~~~~V~~~~~ls~~-----i~~l~l~~~~~~~~~~~pGQ~ 168 (409)
T PRK05464 104 AKEGWRLSCQVKVKQDMKIEVP---EE--I-----FGVKKWECTVISNDNVATF-----IKELVLKIPEGEEVPFRAGGY 168 (409)
T ss_pred ccCCcEEEeeCEECCCEEEEEC---cc--c-----ccceEEEEEEEEcccCCch-----hheEEEecCCCCcccccCCce
Confidence 4567889999999988776532 11 0 2334578999999999999 999999987 4688999999
Q ss_pred EEEecCCCCC-------------------------CCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCceecC
Q 043022 123 IGVIADGVDK-------------------------NAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKG 177 (361)
Q Consensus 123 v~l~~~~~~~-------------------------~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G 177 (361)
+.|.+++.+. .......|+|||+|.|. +.+.++|+||.+.+.....+..+|
T Consensus 169 v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ySias~p~----~~~~l~~~vr~~~~~~~~~~~~~G 244 (409)
T PRK05464 169 IQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVIRAYSMANYPE----EKGIIMLNVRIATPPPGNPDVPPG 244 (409)
T ss_pred EEEEcccccccccccccchhhhhhhhhccccceeccCCCceeeeeccCCCCC----CCCeEEEEEEEeecCCCcCCCCCC
Confidence 9999864210 01123579999999986 567999999985332222233479
Q ss_pred ccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCccc
Q 043022 178 VCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSL 257 (361)
Q Consensus 178 ~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~ 257 (361)
.+|+||+++++||.|.|.||+|+++.. +..+++|||||||||||+++|+++++..... .++++|+||+|+.+|+
T Consensus 245 ~~S~~L~~l~~Gd~v~v~gP~G~f~~~--~~~~~ivlIAgGtGIaP~~sml~~~l~~~~~----~~~v~L~~g~r~~~d~ 318 (409)
T PRK05464 245 IMSSYIFSLKPGDKVTISGPFGEFFAK--DTDAEMVFIGGGAGMAPMRSHIFDQLKRLKS----KRKISFWYGARSLREM 318 (409)
T ss_pred chhhHHHhCCCCCEEEEEccccCcEec--CCCceEEEEEeccChhHHHHHHHHHHhCCCC----CceEEEEEecCCHHHh
Confidence 999999999999999999999998764 3458999999999999999999887654321 2689999999999999
Q ss_pred ccHHHHHHHHHhCCCceEEEEEecCC--cccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHH
Q 043022 258 LYKEEFEKMKEKAPENFRLDFAVSRE--QKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSL 335 (361)
Q Consensus 258 ~~~~el~~l~~~~~~~~~~~~~~s~~--~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~ 335 (361)
+|.++|++|.++++ +++++++++++ .+.|.+.++++++.+.+.. +......++..||+|||+.|++++.+.|.+.
T Consensus 319 ~~~~el~~l~~~~~-~~~~~~~~s~~~~~~~~~g~~G~v~~~l~~~~--l~~~~~~~~~~vyiCGP~~m~~av~~~L~~~ 395 (409)
T PRK05464 319 FYVEDFDQLAAENP-NFKWHVALSDPLPEDNWTGYTGFIHNVLYENY--LKDHEAPEDCEYYMCGPPMMNAAVIKMLKDL 395 (409)
T ss_pred hHHHHHHHHHHhCC-CeEEEEEEcCCCCCCCCCCccceeCHHHHHhh--hhhcCCCCCeEEEEECCHHHHHHHHHHHHHc
Confidence 99999999999888 89999998875 3467788899998776532 1111112467899999999999999999998
Q ss_pred HHcc
Q 043022 336 AAND 339 (361)
Q Consensus 336 g~~~ 339 (361)
|...
T Consensus 396 Gv~~ 399 (409)
T PRK05464 396 GVED 399 (409)
T ss_pred CCCH
Confidence 8774
No 22
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=100.00 E-value=7.3e-39 Score=289.98 Aligned_cols=224 Identities=23% Similarity=0.380 Sum_probs=188.4
Q ss_pred CCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCcc--ccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEE
Q 043022 81 PKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEV--PYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTV 158 (361)
Q Consensus 81 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l--~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l 158 (361)
|.+.+.++|++++.++++ ++.++|+.+... .|+||||+.|.+++.. ..|+|||+|.+. +.+.+
T Consensus 3 ~~~~~~~~v~~~~~~t~~-----~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~------~~r~ySi~s~~~----~~~~l 67 (238)
T cd06211 3 NVKDFEGTVVEIEDLTPT-----IKGVRLKLDEPEEIEFQAGQYVNLQAPGYE------GTRAFSIASSPS----DAGEI 67 (238)
T ss_pred CceEEeEEEEEEEecCCC-----EEEEEEEcCCCCcCccCCCCeEEEEcCCCC------CccccccCCCCC----CCCEE
Confidence 455778999999999999 999999987754 7999999999987532 579999999986 56899
Q ss_pred EEEEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhccc
Q 043022 159 SLCVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHE 237 (361)
Q Consensus 159 ~~~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~ 237 (361)
+|+|++++ +|.+|++|++ +++|++|.|.||+|.++..+ +..+++|||||||||||+++++++++..+.
T Consensus 68 ~l~i~~~~---------~G~~s~~l~~~l~~G~~v~i~gP~G~~~~~~-~~~~~~v~iagG~GiaP~~~~l~~~~~~~~- 136 (238)
T cd06211 68 ELHIRLVP---------GGIATTYVHKQLKEGDELEISGPYGDFFVRD-SDQRPIIFIAGGSGLSSPRSMILDLLERGD- 136 (238)
T ss_pred EEEEEECC---------CCcchhhHhhcCCCCCEEEEECCccceEecC-CCCCCEEEEeCCcCHHHHHHHHHHHHhcCC-
Confidence 99999986 7999999985 99999999999999976543 445799999999999999999999876542
Q ss_pred ccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCc--ccCCCCeeEecchHHHhHHHHHHHhccCCeE
Q 043022 238 DYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQ--KNEKGEKMYIQTRMAEYANELWELLKKDNTY 315 (361)
Q Consensus 238 ~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~--~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~ 315 (361)
..++.|+|++|+.++++|.++|++|.+.++ +++++++++++. +.|.+.++++++.+.+.... .. ++..
T Consensus 137 ----~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~-~~~~~~~~s~~~~~~~~~~~~g~v~~~l~~~~~~---~~--~~~~ 206 (238)
T cd06211 137 ----TRKITLFFGARTRAELYYLDEFEALEKDHP-NFKYVPALSREPPESNWKGFTGFVHDAAKKHFKN---DF--RGHK 206 (238)
T ss_pred ----CCcEEEEEecCChhhhccHHHHHHHHHhCC-CeEEEEEECCCCCCcCcccccCcHHHHHHHhccc---cc--ccCE
Confidence 257999999999999999999999998888 899999999853 46777788888766543210 11 3678
Q ss_pred EEEECCcchHHHHHHHHHHHHHccC
Q 043022 316 VYMCGLRGMEKGIDDIMVSLAANDG 340 (361)
Q Consensus 316 vyvCGp~~m~~~v~~~L~~~g~~~~ 340 (361)
+|+|||+.|++++.+.|.+.|.+.+
T Consensus 207 vyvCGp~~m~~~~~~~L~~~Gv~~~ 231 (238)
T cd06211 207 AYLCGPPPMIDACIKTLMQGRLFER 231 (238)
T ss_pred EEEECCHHHHHHHHHHHHHcCCCHH
Confidence 9999999999999999999988743
No 23
>PRK08051 fre FMN reductase; Validated
Probab=100.00 E-value=1.1e-38 Score=287.59 Aligned_cols=219 Identities=18% Similarity=0.231 Sum_probs=184.7
Q ss_pred CeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEE
Q 043022 84 PYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVK 163 (361)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~ 163 (361)
.++++|.+++.++++ ++.|+|+.+..+.|+||||+.|.++.. ..|+|||+|.|. +.+.++|+|+
T Consensus 2 ~~~~~v~~i~~~~~~-----~~~l~l~~~~~~~~~pGQ~v~l~~~~~-------~~r~ySias~p~----~~~~l~~~v~ 65 (232)
T PRK08051 2 TLSCKVTSVEAITDT-----VYRVRLVPEAPFSFRAGQYLMVVMGEK-------DKRPFSIASTPR----EKGFIELHIG 65 (232)
T ss_pred eeEEEEEEEecCCCC-----eEEEEEecCCCCccCCCCEEEEEcCCC-------cceeecccCCCC----CCCcEEEEEE
Confidence 578999999999999 999999988788999999999998632 479999999986 4678999999
Q ss_pred EeeEecCCCceecCccchhhh-cCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccC
Q 043022 164 RLVYTNENGEIVKGVCSNFLC-DLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFN 242 (361)
Q Consensus 164 ~~~~~~~~~~~~~G~~S~~L~-~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~ 242 (361)
..+ .|..+.++. ++++|++|.+.||+|+++..+ +..+++|||||||||||+++|+++++..+. .
T Consensus 66 ~~~---------~~~~~~~~~~~l~~G~~v~v~gP~G~~~~~~-~~~~~~vliagG~GiaP~~~~l~~~~~~~~-----~ 130 (232)
T PRK08051 66 ASE---------LNLYAMAVMERILKDGEIEVDIPHGDAWLRE-ESERPLLLIAGGTGFSYARSILLTALAQGP-----N 130 (232)
T ss_pred EcC---------CCcchHHHHHHcCCCCEEEEEcCCCceEccC-CCCCcEEEEecCcCcchHHHHHHHHHHhCC-----C
Confidence 875 566666664 599999999999999977654 345799999999999999999999876532 2
Q ss_pred CeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCc
Q 043022 243 GLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLR 322 (361)
Q Consensus 243 ~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~ 322 (361)
.+++|+|++|+.++++|.+||++|+++++ +++++++++++++.|.+.++++++.+.+.. ....+..+|+|||+
T Consensus 131 ~~v~l~~g~r~~~~~~~~~el~~l~~~~~-~~~~~~~~~~~~~~~~~~~g~v~~~l~~~~------~~~~~~~vyicGp~ 203 (232)
T PRK08051 131 RPITLYWGGREEDHLYDLDELEALALKHP-NLHFVPVVEQPEEGWQGKTGTVLTAVMQDF------GSLAEYDIYIAGRF 203 (232)
T ss_pred CcEEEEEEeccHHHhhhhHHHHHHHHHCC-CcEEEEEeCCCCCCcccceeeehHHHHhhc------cCcccCEEEEECCH
Confidence 68999999999999999999999999987 899999999887788888899887665422 11135689999999
Q ss_pred chHHHHHHHH-HHHHHccC
Q 043022 323 GMEKGIDDIM-VSLAANDG 340 (361)
Q Consensus 323 ~m~~~v~~~L-~~~g~~~~ 340 (361)
+|++++.+.| .+.|.+..
T Consensus 204 ~m~~~v~~~l~~~~G~~~~ 222 (232)
T PRK08051 204 EMAKIARELFCRERGAREE 222 (232)
T ss_pred HHHHHHHHHHHHHcCCCHH
Confidence 9999999999 88887743
No 24
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=100.00 E-value=1.5e-38 Score=285.39 Aligned_cols=216 Identities=23% Similarity=0.364 Sum_probs=185.5
Q ss_pred EEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEee
Q 043022 87 GRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLV 166 (361)
Q Consensus 87 ~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~ 166 (361)
++|++++.++++ +++|+|+.+..+.|+||||+.|.+++. ..|+|||+|.+. +.+.++|+|+.++
T Consensus 1 ~~v~~~~~~t~~-----~~~l~l~~~~~~~~~pGQ~v~l~~~~~-------~~r~ySi~s~~~----~~~~l~~~vk~~~ 64 (224)
T cd06189 1 CKVESIEPLNDD-----VYRVRLKPPAPLDFLAGQYLDLLLDDG-------DKRPFSIASAPH----EDGEIELHIRAVP 64 (224)
T ss_pred CEEEEEEeCCCc-----eEEEEEecCCCcccCCCCEEEEEcCCC-------CceeeecccCCC----CCCeEEEEEEecC
Confidence 478999999999 999999998878899999999998642 479999999986 4689999999986
Q ss_pred EecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeE
Q 043022 167 YTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLA 245 (361)
Q Consensus 167 ~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i 245 (361)
+|.+|++|++ +++|++|.|.||+|.++..+ ...+++|||||||||||+++++++++.... ..++
T Consensus 65 ---------~G~~s~~l~~~l~~G~~v~i~gP~G~~~~~~-~~~~~ivliagG~GiaP~~~~l~~l~~~~~-----~~~v 129 (224)
T cd06189 65 ---------GGSFSDYVFEELKENGLVRIEGPLGDFFLRE-DSDRPLILIAGGTGFAPIKSILEHLLAQGS-----KRPI 129 (224)
T ss_pred ---------CCccHHHHHHhccCCCEEEEecCCccEEecc-CCCCCEEEEecCcCHHHHHHHHHHHHhcCC-----CCCE
Confidence 7999999987 99999999999999977543 346799999999999999999999886542 2689
Q ss_pred EEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchH
Q 043022 246 WLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGME 325 (361)
Q Consensus 246 ~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~ 325 (361)
+|+|++|+.++++|.++|++|+++++ +++++++++++++.|.+..+++++.+.+... ...+..+|+|||+.|+
T Consensus 130 ~l~~~~r~~~~~~~~~~l~~l~~~~~-~~~~~~~~s~~~~~~~g~~g~v~~~l~~~~~------~~~~~~v~vCGp~~m~ 202 (224)
T cd06189 130 HLYWGARTEEDLYLDELLEAWAEAHP-NFTYVPVLSEPEEGWQGRTGLVHEAVLEDFP------DLSDFDVYACGSPEMV 202 (224)
T ss_pred EEEEecCChhhccCHHHHHHHHHhCC-CeEEEEEeCCCCcCCccccccHHHHHHhhcc------CccccEEEEECCHHHH
Confidence 99999999999999999999998877 8999999998877788888888876654321 1146789999999999
Q ss_pred HHHHHHHHHHHHccC
Q 043022 326 KGIDDIMVSLAANDG 340 (361)
Q Consensus 326 ~~v~~~L~~~g~~~~ 340 (361)
+++.+.|.+.|....
T Consensus 203 ~~~~~~l~~~G~~~~ 217 (224)
T cd06189 203 YAARDDFVEKGLPEE 217 (224)
T ss_pred HHHHHHHHHcCCCHH
Confidence 999999999887643
No 25
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=100.00 E-value=1.4e-38 Score=295.30 Aligned_cols=241 Identities=22% Similarity=0.392 Sum_probs=191.5
Q ss_pred CCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCc--cccCCCcEEEEecCCCC--------------------------C
Q 043022 81 PKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGE--VPYKEGQSIGVIADGVD--------------------------K 132 (361)
Q Consensus 81 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~--l~~~pGQ~v~l~~~~~~--------------------------~ 132 (361)
|.+.+.++|++++.++++ ++.|+|+.+.. +.|+||||+.|.++... .
T Consensus 6 ~~~~~~~~v~~~~~~~~d-----~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (283)
T cd06188 6 GAKKWECTVISNDNVATF-----IKELVLKLPSGEEIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFK 80 (283)
T ss_pred ccceEEEEEEEcccccch-----hhheEEecCCCceeeecCCceEEEEcCCccccccccccchhhhhHHhhhcccccccc
Confidence 556788999999999999 99999998765 78999999999986420 0
Q ss_pred CCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcE
Q 043022 133 NAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATV 212 (361)
Q Consensus 133 ~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~i 212 (361)
++ ....|+|||+|.|. +.+.++|+||+........+...|.+|+||+++++|++|.|.||+|.++.. ...+++
T Consensus 81 ~~-~~~~R~ySias~p~----~~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~l~--~~~~~~ 153 (283)
T cd06188 81 HD-EPVSRAYSLANYPA----EEGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKPGDKVTASGPFGEFFIK--DTDREM 153 (283)
T ss_pred cC-CccccccCcCCCCC----CCCeEEEEEEEeccCCccCCCCCceehhHHhcCCCCCEEEEECcccccccc--CCCCcE
Confidence 01 11359999999986 568999999974311100012279999999999999999999999987654 345799
Q ss_pred EEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCc--ccCCCC
Q 043022 213 IMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQ--KNEKGE 290 (361)
Q Consensus 213 v~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~--~~~~g~ 290 (361)
||||||||||||++|+++++..... ..+++|+|++|+.++++|.++|++|.++++ ++++++++|++. +.|.+.
T Consensus 154 vlIAgGtGItP~~s~l~~~~~~~~~----~~~v~l~~g~r~~~d~~~~~el~~l~~~~~-~~~~~~~~s~~~~~~~~~~~ 228 (283)
T cd06188 154 VFIGGGAGMAPLRSHIFHLLKTLKS----KRKISFWYGARSLKELFYQEEFEALEKEFP-NFKYHPVLSEPQPEDNWDGY 228 (283)
T ss_pred EEEEecccHhHHHHHHHHHHhcCCC----CceEEEEEecCCHHHhhHHHHHHHHHHHCC-CeEEEEEECCCCccCCCCCc
Confidence 9999999999999999987754321 268999999999999999999999999888 899999888764 567788
Q ss_pred eeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHccC
Q 043022 291 KMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDG 340 (361)
Q Consensus 291 ~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~ 340 (361)
+++|++.+.+.. +.......+..+|+|||+.|++++.+.|++.|.+.+
T Consensus 229 ~G~v~~~~~~~~--~~~~~~~~~~~vyiCGP~~m~~~~~~~l~~~Gv~~~ 276 (283)
T cd06188 229 TGFIHQVLLENY--LKKHPAPEDIEFYLCGPPPMNSAVIKMLDDLGVPRE 276 (283)
T ss_pred ceeecHHHHHHH--hccCCCCCCeEEEEECCHHHHHHHHHHHHHcCCCHH
Confidence 899998776532 111111235789999999999999999999887753
No 26
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=100.00 E-value=2.2e-40 Score=309.17 Aligned_cols=298 Identities=25% Similarity=0.478 Sum_probs=231.5
Q ss_pred cCCCCcccceecCCCcccccccceeeeeeec--cceeEEEeeecccCccchhhhccccccccccc-ccc--cCCCCeeEE
Q 043022 14 KSTSLPTRTSIISPDRITFRKVPFYYKDVST--GGRVVSVRAQVTTEAPAKVEKESKKMEEGVIV-NKF--KPKTPYIGR 88 (361)
Q Consensus 14 ~~~~~~~~~~~p~p~~~t~~~~~~~y~di~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~ 88 (361)
+|.+-+.+.| -+|.|+|+++++++|+|+++ +|+++.++++++.+.-+++........+++.. ..| +|.+ +
T Consensus 267 ~s~~~~~~~~-~~~~p~sl~~~lk~~~D~~SvPrrsFFe~l~~~s~~~~EkEkL~efas~qg~ddl~dY~nRpRR----t 341 (574)
T KOG1159|consen 267 SSNDRSSPLP-LLPNPLSLLNLLKYVLDFNSVPRRSFFEMLAHFSTDEMEKEKLQEFASAQGIDDLYDYVNRPRR----T 341 (574)
T ss_pred ccCccccccc-ccCCchhHHHHHHHhcccccCcchHHHHHHHHHccChHHHHHHHHhccccchHHHHHHhcchhh----h
Confidence 3444444444 58999999999999999999 99999999999999776664333322222211 122 2211 1
Q ss_pred EEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEe
Q 043022 89 CLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYT 168 (361)
Q Consensus 89 v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~ 168 (361)
|. .+..| .. .....+++.+.+.+ .+++|.|||||.|. .-.++++|..+.|+
T Consensus 342 il---EvLeD-----F~--------sv~lp~~yl~d~~P--------~IrPR~fSIas~~~-----~~~leL~VAiV~yk 392 (574)
T KOG1159|consen 342 IL---EVLED-----FR--------SVKLPIDYLLDLLP--------VIRPRAFSIASSPG-----AHHLELLVAIVEYK 392 (574)
T ss_pred HH---HHHHh-----ch--------hccCCHHHHHHhcc--------ccccceeeeccCCC-----CCceeEEEEEEEEe
Confidence 11 11112 11 12233333334443 45899999999995 34599999999999
Q ss_pred cCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEE
Q 043022 169 NENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLF 248 (361)
Q Consensus 169 ~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~ 248 (361)
+...++|.|.||+||+.|++|+.|.+.--.|. +..|.+.+.|+||||.||||||+++++++...++. ....||
T Consensus 393 T~l~~pRrGlCS~wl~sL~~g~~i~~~v~~g~-l~~p~~~~~PlImVGPGTGvAPfRa~i~er~~q~~------~~~~lF 465 (574)
T KOG1159|consen 393 TILKEPRRGLCSNWLASLKPGDEIPIKVRPGT-LYFPSDLNKPLIMVGPGTGVAPFRALIQERIYQGD------KENVLF 465 (574)
T ss_pred eeccccccchhHHHHhhcCCCCeEEEEEecCc-cccCCCCCCCeEEEcCCCCcccHHHHHHHHHhhcc------CCceEE
Confidence 99999999999999999999999999877785 56676778999999999999999999987765432 455899
Q ss_pred EeccCCc-ccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCc-chHH
Q 043022 249 LGVPTSS-SLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLR-GMEK 326 (361)
Q Consensus 249 ~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~-~m~~ 326 (361)
||||+.+ |++|.++|.++... .++.++||+++ .+.||||.+.++.+.+++++...++.|||||+. .|..
T Consensus 466 fGCR~K~~Df~y~~eW~~~~~~-----~~~~AFSRDqe----~kvYVQh~i~e~g~~v~~Ll~~~gA~~fvaGsS~~MP~ 536 (574)
T KOG1159|consen 466 FGCRNKDKDFLYEDEWTELNKR-----AFHTAFSRDQE----QKVYVQHKIRENGEEVWDLLDNLGAYFFVAGSSGKMPK 536 (574)
T ss_pred EecccCCccccccchhhhhhcc-----hhhhhcccccc----cceeHHHHHHHhhHHHHHHHhccCCEEEEecCCCCCcH
Confidence 9999997 99999999888643 45568999987 889999999999999999998789999999977 7999
Q ss_pred HHHHHHHHHHHccC---CCHHHHHHHHHHcCCeeEeeC
Q 043022 327 GIDDIMVSLAANDG---IDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 327 ~v~~~L~~~g~~~~---~~~~~~~~~l~~~~r~~~ev~ 361 (361)
+|..+|.++..+++ .+...|++.|++.+||+.|+|
T Consensus 537 ~V~~al~eI~~~e~g~~~e~a~~l~~lekt~ryq~ETW 574 (574)
T KOG1159|consen 537 DVKEALIEIVGKEGGFSKEVASYLKALEKTRRYQQETW 574 (574)
T ss_pred HHHHHHHHHhhhhcCCChHHHHHHHHHHHhccccccCC
Confidence 99999999988876 234449999999999999999
No 27
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=100.00 E-value=2.8e-38 Score=306.83 Aligned_cols=267 Identities=22% Similarity=0.364 Sum_probs=207.7
Q ss_pred cceeEEEeeecccCccchhhhcccccccccccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC--ccccCCCcE
Q 043022 45 GGRVVSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG--EVPYKEGQS 122 (361)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~--~l~~~pGQ~ 122 (361)
..++.+++||..+.++..++.. ++ .+ +...+.++|++++.++++ ++.++|+.+. +++|+||||
T Consensus 100 ~~~g~rLaCq~~~~~d~~i~~~---~~------~~-~~~~~~~~v~~~~~~s~~-----i~~l~l~~~~~~~~~~~pGQf 164 (405)
T TIGR01941 100 AKEGWRLSCQVKVKQDMSIEIP---EE------IF-GVKKWECEVISNDNVATF-----IKELVLKLPDGESVPFKAGGY 164 (405)
T ss_pred hcCCcEEEeeCEECCCEEEEEC---cc------cc-ccceeeeEEEEcccccch-----hheEEEecCCCceeeecCCce
Confidence 5567899999999988776532 11 11 334678999999999999 9999999863 578999999
Q ss_pred EEEecCCCCC-------------------------CCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCceecC
Q 043022 123 IGVIADGVDK-------------------------NAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKG 177 (361)
Q Consensus 123 v~l~~~~~~~-------------------------~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G 177 (361)
+.|.++..+. .......|+|||+|.|. +.+.++|+||+..+.....+..+|
T Consensus 165 v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ySias~p~----~~~~l~~~vr~~~~~~~~~~~~~G 240 (405)
T TIGR01941 165 IQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEETVRAYSMANYPA----EKGIIKLNVRIATPPFINSDIPPG 240 (405)
T ss_pred EEEEcccccccccccccchhhhhhHhhhcchheeccCCCccceeecCCCCCC----CCCeEEEEEEEeccCcccCCCCCC
Confidence 9999864210 00123579999999986 568999999985221111112379
Q ss_pred ccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCccc
Q 043022 178 VCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSL 257 (361)
Q Consensus 178 ~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~ 257 (361)
.+|.||+++++||.|.|.||+|.++..+ ..+++||||||||||||++|+++++..... .++++|+||+|+.+|+
T Consensus 241 ~~S~~L~~l~~Gd~v~i~gP~G~f~l~~--~~~~lvlIAgGtGIaP~lsmi~~~l~~~~~----~~~v~l~~g~R~~~dl 314 (405)
T TIGR01941 241 IMSSYIFSLKPGDKVTISGPFGEFFAKD--TDAEMVFIGGGAGMAPMRSHIFDQLKRLKS----KRKISFWYGARSLREM 314 (405)
T ss_pred cHHHHHhcCCCcCEEEEEeccCCCeecC--CCCCEEEEecCcCcchHHHHHHHHHhcCCC----CCeEEEEEecCCHHHH
Confidence 9999999999999999999999987653 457999999999999999999877653221 2689999999999999
Q ss_pred ccHHHHHHHHHhCCCceEEEEEecCC--cccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHH
Q 043022 258 LYKEEFEKMKEKAPENFRLDFAVSRE--QKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSL 335 (361)
Q Consensus 258 ~~~~el~~l~~~~~~~~~~~~~~s~~--~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~ 335 (361)
+|.++|++|.++++ +++++++++++ ++.|.|.++++++.+.+.. +.......+..+|+|||+.|++++.+.|.+.
T Consensus 315 ~~~~el~~l~~~~~-~~~~~~~~s~~~~~~~~~g~~G~v~~~l~~~~--l~~~~~~~~~~vylCGP~~m~~av~~~L~~~ 391 (405)
T TIGR01941 315 FYQEDFDQLEAENP-NFVWHVALSDPQPEDNWTGYTGFIHNVLYENY--LKDHDAPEDCEFYMCGPPMMNAAVIKMLEDL 391 (405)
T ss_pred hHHHHHHHHHHhCC-CeEEEEEeCCCCccCCCCCccceeCHHHHHhh--hcccCCCCCeEEEEeCCHHHHHHHHHHHHHc
Confidence 99999999998888 99999998865 3567888899988775421 1111112467899999999999999999998
Q ss_pred HHcc
Q 043022 336 AAND 339 (361)
Q Consensus 336 g~~~ 339 (361)
|...
T Consensus 392 Gv~~ 395 (405)
T TIGR01941 392 GVER 395 (405)
T ss_pred CCCH
Confidence 8764
No 28
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=100.00 E-value=2.4e-38 Score=286.28 Aligned_cols=219 Identities=21% Similarity=0.323 Sum_probs=184.3
Q ss_pred eeEEEEeEeeecCCCCCCceEEEEeeCCCc------cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEE
Q 043022 85 YIGRCLLNTKITGDDAPGETWHMVFSTEGE------VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTV 158 (361)
Q Consensus 85 ~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~------l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l 158 (361)
..++|++++.++++ ++.++|+.+.. +.|+||||+.|.+++. ...|+|||+|.|. +.+.+
T Consensus 2 ~~~~v~~~~~~~~~-----~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~------~~~R~ySi~s~~~----~~~~l 66 (236)
T cd06210 2 REAEIVAVDRVSSN-----VVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPGT------DTRRSYSLANTPN----WDGRL 66 (236)
T ss_pred ceEEEEEEeecCCc-----eEEEEEEeCCcccccccCCcCCCCEEEEEcCCC------ccceecccCCCCC----CCCEE
Confidence 36889999999999 99999998754 6799999999998742 2589999999986 46799
Q ss_pred EEEEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhccc
Q 043022 159 SLCVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHE 237 (361)
Q Consensus 159 ~~~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~ 237 (361)
+|+|+..+ +|.+|++|++ +++|+.|.|.||+|.++ +.....+++|||||||||||+++|++++.....
T Consensus 67 ~~~i~~~~---------~G~~s~~l~~~~~~Gd~v~i~gP~G~f~-l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~- 135 (236)
T cd06210 67 EFLIRLLP---------GGAFSTYLETRAKVGQRLNLRGPLGAFG-LRENGLRPRWFVAGGTGLAPLLSMLRRMAEWGE- 135 (236)
T ss_pred EEEEEEcC---------CCccchhhhhCcCCCCEEEEecCcceee-ecCCCCccEEEEccCcchhHHHHHHHHHHhcCC-
Confidence 99999876 7999999998 99999999999999954 433445789999999999999999999876432
Q ss_pred ccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEE
Q 043022 238 DYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVY 317 (361)
Q Consensus 238 ~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vy 317 (361)
..+++|+|++|+.+|++|.++|++|++.++ +++++++++++.+.|.+..+++++.+.+.... .. ....+|
T Consensus 136 ----~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~-~~~~~~~~s~~~~~~~~~~g~~~~~l~~~l~~----~~-~~~~vy 205 (236)
T cd06210 136 ----PQEARLFFGVNTEAELFYLDELKRLADSLP-NLTVRICVWRPGGEWEGYRGTVVDALREDLAS----SD-AKPDIY 205 (236)
T ss_pred ----CceEEEEEecCCHHHhhhHHHHHHHHHhCC-CeEEEEEEcCCCCCcCCccCcHHHHHHHhhcc----cC-CCcEEE
Confidence 268999999999999999999999999888 89999999987677777778877665542211 11 356899
Q ss_pred EECCcchHHHHHHHHHHHHHcc
Q 043022 318 MCGLRGMEKGIDDIMVSLAAND 339 (361)
Q Consensus 318 vCGp~~m~~~v~~~L~~~g~~~ 339 (361)
+|||+.|++++++.|.+.|...
T Consensus 206 icGp~~m~~~~~~~l~~~G~~~ 227 (236)
T cd06210 206 LCGPPGMVDAAFAAAREAGVPD 227 (236)
T ss_pred EeCCHHHHHHHHHHHHHcCCCH
Confidence 9999999999999999988754
No 29
>PRK05713 hypothetical protein; Provisional
Probab=100.00 E-value=2.9e-38 Score=296.89 Aligned_cols=237 Identities=18% Similarity=0.255 Sum_probs=191.7
Q ss_pred cceeEEEeeecccCccchhhhcccccccccccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEE
Q 043022 45 GGRVVSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIG 124 (361)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~ 124 (361)
..++++++|+..+.+|.+++.. ..+ ...+.++|++++.++++ ++.|+|+.+..+.|+||||+.
T Consensus 64 ~~~g~~L~C~~~~~~d~~i~~~--~~~----------~~~~~~~V~~~~~~t~d-----v~~l~l~~~~~~~~~~GQfv~ 126 (312)
T PRK05713 64 REQGWRLACQCRVVGDLRVEVF--DPQ----------RDGLPARVVALDWLGGD-----VLRLRLEPERPLRYRAGQHLV 126 (312)
T ss_pred HhCCeEEEeECEECCceEEEec--Ccc----------cCcCCeEEEEEecCCCC-----EEEEEEccCCcCCcCCCCEEE
Confidence 4567899999999999887643 111 12456999999999999 999999988788999999999
Q ss_pred EecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCC
Q 043022 125 VIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLM 204 (361)
Q Consensus 125 l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~ 204 (361)
|.+++. ..|+|||+|.|. +.+.++|+|++++ .|.+|.+|+++++|++|.+.+|.|.+|.+
T Consensus 127 l~~~~~-------~~R~ySias~p~----~~~~l~~~I~~~~---------~G~~s~~l~~l~~Gd~v~l~~p~gg~~~~ 186 (312)
T PRK05713 127 LWTAGG-------VARPYSLASLPG----EDPFLEFHIDCSR---------PGAFCDAARQLQVGDLLRLGELRGGALHY 186 (312)
T ss_pred EecCCC-------cccccccCcCCC----CCCeEEEEEEEcC---------CCccchhhhcCCCCCEEEEccCCCCceEe
Confidence 997531 479999999986 5689999999876 79999999889999999999999866554
Q ss_pred CCC-CCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCC
Q 043022 205 PRD-PNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSRE 283 (361)
Q Consensus 205 ~~~-~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~ 283 (361)
+.+ ..+++||||||||||||++|+++++..+. .++++|+||+|+.+|++|.++|++|+++++ +|++++..++.
T Consensus 187 ~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~-----~~~v~l~~g~r~~~d~~~~~el~~l~~~~~-~~~~~~~~~~~ 260 (312)
T PRK05713 187 DPDWQERPLWLLAAGTGLAPLWGILREALRQGH-----QGPIRLLHLARDSAGHYLAEPLAALAGRHP-QLSVELVTAAQ 260 (312)
T ss_pred cCCCCCCcEEEEecCcChhHHHHHHHHHHhcCC-----CCcEEEEEEcCchHHhhhHHHHHHHHHHCC-CcEEEEEECcc
Confidence 423 45799999999999999999998876542 267999999999999999999999998888 89988776532
Q ss_pred cccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHccC
Q 043022 284 QKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDG 340 (361)
Q Consensus 284 ~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~ 340 (361)
+++.+. ++.. . .....+|+|||++|++++.+.|.+.|.+.+
T Consensus 261 ----------~~~~l~----~~~~-~-~~~~~vyiCGp~~mv~~~~~~L~~~Gv~~~ 301 (312)
T PRK05713 261 ----------LPAALA----ELRL-V-SRQTMALLCGSPASVERFARRLYLAGLPRN 301 (312)
T ss_pred ----------hhhhhh----hccC-C-CCCeEEEEeCCHHHHHHHHHHHHHcCCCHH
Confidence 222222 1111 1 135789999999999999999998887654
No 30
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=100.00 E-value=7.4e-38 Score=281.60 Aligned_cols=215 Identities=22% Similarity=0.389 Sum_probs=183.6
Q ss_pred eeEEEEeEeeecCCCCCCceEEEEeeCCC--ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEE
Q 043022 85 YIGRCLLNTKITGDDAPGETWHMVFSTEG--EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCV 162 (361)
Q Consensus 85 ~~~~v~~~~~~~~~~~~~~~~~l~l~~~~--~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V 162 (361)
+.++|++++.++++ ++.++|+.+. .+.|+||||+.|.+++.. ..|+|||+|.|. ++.++|+|
T Consensus 2 ~~~~V~~~~~~t~~-----~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~------~~r~ysi~s~~~-----~~~i~~~i 65 (228)
T cd06209 2 FEATVTEVERLSDS-----TIGLTLELDEAGALAFLPGQYVNLQVPGTD------ETRSYSFSSAPG-----DPRLEFLI 65 (228)
T ss_pred eeEEEEEEEEcCCC-----eEEEEEEcCCCCcCccCCCCEEEEEeCCCC------cccccccccCCC-----CCeEEEEE
Confidence 47899999999999 9999999877 678999999999987432 479999999884 38999999
Q ss_pred EEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhccccccc
Q 043022 163 KRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKF 241 (361)
Q Consensus 163 ~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~ 241 (361)
+.++ +|.+|+||++ +++|+.|.|.||+|.++..+ ..++++||||||||||++++++++.....
T Consensus 66 ~~~~---------~G~~s~~l~~~l~~G~~v~v~gP~G~~~~~~--~~~~~vlia~GtGIaP~~~ll~~~~~~~~----- 129 (228)
T cd06209 66 RLLP---------GGAMSSYLRDRAQPGDRLTLTGPLGSFYLRE--VKRPLLMLAGGTGLAPFLSMLDVLAEDGS----- 129 (228)
T ss_pred EEcC---------CCcchhhHHhccCCCCEEEEECCcccceecC--CCCeEEEEEcccCHhHHHHHHHHHHhcCC-----
Confidence 9976 7999999998 99999999999999876543 34799999999999999999999876441
Q ss_pred CCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECC
Q 043022 242 NGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGL 321 (361)
Q Consensus 242 ~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp 321 (361)
.++++|+|++|+.++++|.++|++|.+.++ ++++++.+++++. |.+.++++++.+.+.. +...+..+|+|||
T Consensus 130 ~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~-~~~~~~~~s~~~~-~~~~~g~v~~~~~~~~------~~~~~~~v~icGp 201 (228)
T cd06209 130 AHPVHLVYGVTRDADLVELDRLEALAERLP-GFSFRTVVADPDS-WHPRKGYVTDHLEAED------LNDGDVDVYLCGP 201 (228)
T ss_pred CCcEEEEEecCCHHHhccHHHHHHHHHhCC-CeEEEEEEcCCCc-cCCCcCCccHHHHHhh------ccCCCcEEEEeCC
Confidence 368999999999999999999999998888 8999999998654 7777888887766521 2224578999999
Q ss_pred cchHHHHHHHHHHHHHcc
Q 043022 322 RGMEKGIDDIMVSLAAND 339 (361)
Q Consensus 322 ~~m~~~v~~~L~~~g~~~ 339 (361)
++|++++++.|.+.|.+.
T Consensus 202 ~~m~~~~~~~l~~~G~~~ 219 (228)
T cd06209 202 PPMVDAVRSWLDEQGIEP 219 (228)
T ss_pred HHHHHHHHHHHHHcCCCH
Confidence 999999999999987764
No 31
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=100.00 E-value=7.5e-38 Score=281.36 Aligned_cols=216 Identities=22% Similarity=0.355 Sum_probs=182.2
Q ss_pred eeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEE
Q 043022 85 YIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKR 164 (361)
Q Consensus 85 ~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~ 164 (361)
++++|++++.++++ +++++|+.++.++|+||||+.|.+++.. ..|+|||+|.|. +.+.++|+|++
T Consensus 1 ~~~~v~~~~~~t~~-----~~~~~l~~~~~~~~~pGQ~~~l~~~~~~------~~r~ysi~s~~~----~~~~l~~~vk~ 65 (227)
T cd06213 1 IRGTIVAQERLTHD-----IVRLTVQLDRPIAYKAGQYAELTLPGLP------AARSYSFANAPQ----GDGQLSFHIRK 65 (227)
T ss_pred CeEEEEEEeecCCC-----EEEEEEecCCCCCcCCCCEEEEEeCCCC------cccccccCCCCC----CCCEEEEEEEE
Confidence 46899999999999 9999999987788999999999986432 589999999986 56899999998
Q ss_pred eeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCC
Q 043022 165 LVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNG 243 (361)
Q Consensus 165 ~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~ 243 (361)
.+ +|.+|++|++ +++|++|.|+||+|.++..+ ..+++|||||||||||+++|+++++.... .+
T Consensus 66 ~~---------~G~~s~~l~~~l~~G~~v~i~gP~G~~~~~~--~~~~~lliagG~GiaP~~~~~~~~~~~~~-----~~ 129 (227)
T cd06213 66 VP---------GGAFSGWLFGADRTGERLTVRGPFGDFWLRP--GDAPILCIAGGSGLAPILAILEQARAAGT-----KR 129 (227)
T ss_pred CC---------CCcchHHHHhcCCCCCEEEEeCCCcceEeCC--CCCcEEEEecccchhHHHHHHHHHHhcCC-----CC
Confidence 76 7999999976 99999999999999976542 34789999999999999999999876432 26
Q ss_pred eEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCc--ccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECC
Q 043022 244 LAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQ--KNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGL 321 (361)
Q Consensus 244 ~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~--~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp 321 (361)
+++|+|++|+.+|++|.++|+++++++..+++++.+++++. ..|.+..+++++.+.+.. . .+..+|+|||
T Consensus 130 ~i~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~g~~g~v~~~l~~~~-------~-~~~~v~~CGp 201 (227)
T cd06213 130 DVTLLFGARTQRDLYALDEIAAIAARWRGRFRFIPVLSEEPADSSWKGARGLVTEHIAEVL-------L-AATEAYLCGP 201 (227)
T ss_pred cEEEEEeeCCHHHhccHHHHHHHHHhccCCeEEEEEecCCCCCCCccCCcccHHHHHHhhc-------c-CCCEEEEECC
Confidence 79999999999999999999999977554899998898763 346677777776654421 1 4689999999
Q ss_pred cchHHHHHHHHHHHHHcc
Q 043022 322 RGMEKGIDDIMVSLAAND 339 (361)
Q Consensus 322 ~~m~~~v~~~L~~~g~~~ 339 (361)
++|++++.+.|.+.|...
T Consensus 202 ~~~~~~~~~~l~~~G~~~ 219 (227)
T cd06213 202 PAMIDAAIAVLRALGIAR 219 (227)
T ss_pred HHHHHHHHHHHHHcCCCH
Confidence 999999999999988764
No 32
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=100.00 E-value=1.6e-37 Score=281.66 Aligned_cols=238 Identities=25% Similarity=0.312 Sum_probs=189.9
Q ss_pred EEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeE
Q 043022 88 RCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY 167 (361)
Q Consensus 88 ~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~ 167 (361)
+|++++.++++ +++|+|+.+..+.|+||||+.|.++..+ + +...|+|||+|.+. ++.++|+|++++
T Consensus 1 ~v~~~~~~t~~-----~~~~~l~~~~~~~~~pGQ~v~l~~~~~~--~-~~~~R~ySi~s~~~-----~~~i~~~i~~~~- 66 (241)
T cd06195 1 TVLKRRDWTDD-----LFSFRVTRDIPFRFQAGQFTKLGLPNDD--G-KLVRRAYSIASAPY-----EENLEFYIILVP- 66 (241)
T ss_pred CeEEEEEcCCC-----EEEEEEcCCCCCccCCCCeEEEeccCCC--C-CeeeecccccCCCC-----CCeEEEEEEEec-
Confidence 37788999998 9999999988778999999999987531 1 33579999999984 479999999876
Q ss_pred ecCCCceecCccchhhhcCCCCCEEEEE-ccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEE
Q 043022 168 TNENGEIVKGVCSNFLCDLKPGAEVKIT-GPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAW 246 (361)
Q Consensus 168 ~~~~~~~~~G~~S~~L~~l~~G~~v~i~-gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~ 246 (361)
+|.+|+||+++++|+.|.+. ||+|.+...+....+++||||||||||||++|++++..... .++++
T Consensus 67 --------~G~~s~~l~~l~~Gd~v~v~~gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~~-----~~~v~ 133 (241)
T cd06195 67 --------DGPLTPRLFKLKPGDTIYVGKKPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWER-----FDKIV 133 (241)
T ss_pred --------CCCCchHHhcCCCCCEEEECcCCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhCC-----CCcEE
Confidence 79999999999999999999 99998554332245799999999999999999999875432 36899
Q ss_pred EEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHH-hHHHHHHH-hccCCeEEEEECCcch
Q 043022 247 LFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAE-YANELWEL-LKKDNTYVYMCGLRGM 324 (361)
Q Consensus 247 L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~-~~~~~~~~-l~~~~~~vyvCGp~~m 324 (361)
|+|++|+.+|++|.+||++|.+++..+|+++++++++++.| +.++++++.+.+ .+.+.... +...+..||+|||++|
T Consensus 134 l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~-~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp~~m 212 (241)
T cd06195 134 LVHGVRYAEELAYQDEIEALAKQYNGKFRYVPIVSREKENG-ALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGNPQM 212 (241)
T ss_pred EEEccCCHHHhhhHHHHHHHHhhcCCCEEEEEEECcCCccC-CCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCCHHH
Confidence 99999999999999999999987333899999999887665 567888876652 22222111 1114678999999999
Q ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHcCCeeEeeC
Q 043022 325 EKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 325 ~~~v~~~L~~~g~~~~~~~~~~~~~l~~~~r~~~ev~ 361 (361)
++++.+.|.+.|...... .+.++++.|-|
T Consensus 213 ~~~~~~~l~~~G~~~~~~--------~~~~~~~~E~~ 241 (241)
T cd06195 213 IDDTQELLKEKGFSKNHR--------RKPGNITVEKY 241 (241)
T ss_pred HHHHHHHHHHcCCCcccc--------CCCceEEEecC
Confidence 999999999998885322 34567777655
No 33
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=100.00 E-value=2e-37 Score=281.88 Aligned_cols=223 Identities=17% Similarity=0.197 Sum_probs=177.2
Q ss_pred CCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEE
Q 043022 83 TPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCV 162 (361)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V 162 (361)
.++.++|++++.++++ +++|+|+.+. .+|+||||+.|.++..+ ....|+|||+|.|. .+.++|+|
T Consensus 3 ~~~~~~V~~i~~~t~~-----v~~l~l~~~~-~~~~pGQfv~l~~~~~g----~~~~R~ySias~p~-----~~~l~~~i 67 (248)
T PRK10926 3 DWVTGKVTKVQNWTDA-----LFSLTVHAPV-DPFTAGQFTKLGLEIDG----ERVQRAYSYVNAPD-----NPDLEFYL 67 (248)
T ss_pred ccEEEEEEEEEEcCCC-----eEEEEEeCCC-CCCCCCCEEEEEEecCC----cEEEeeecccCCCC-----CCeEEEEE
Confidence 4788999999999999 9999998763 37999999999975221 22479999999984 45899999
Q ss_pred EEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCC-CCCcEEEEecCCchhhHHHHHHHHHhhccccccc
Q 043022 163 KRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRD-PNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKF 241 (361)
Q Consensus 163 ~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~-~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~ 241 (361)
++++ +|.+|+||+++++|++|.|.||.+.+|.++.. ..+++||||||||||||++|++++...+.
T Consensus 68 k~~~---------~G~~S~~L~~l~~Gd~v~i~gp~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~~----- 133 (248)
T PRK10926 68 VTVP---------EGKLSPRLAALKPGDEVQVVSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLER----- 133 (248)
T ss_pred EEeC---------CCCcChHHHhCCCCCEEEEecCCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhCC-----
Confidence 9986 89999999999999999999988666655432 34799999999999999999998764332
Q ss_pred CCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHh-HHHHHH-HhccCCeEEEEE
Q 043022 242 NGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEY-ANELWE-LLKKDNTYVYMC 319 (361)
Q Consensus 242 ~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~-~~~~~~-~l~~~~~~vyvC 319 (361)
.++++|+||+|+.+|++|.+||++|+++++.++++++++|+++. +.+.++++++.+.+. ...... .+..++..+|+|
T Consensus 134 ~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~v~~~~s~~~~-~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~C 212 (248)
T PRK10926 134 FKNLVLVHAARYAADLSYLPLMQELEQRYEGKLRIQTVVSRETA-PGSLTGRVPALIESGELEAAVGLPMDAETSHVMLC 212 (248)
T ss_pred CCcEEEEEeCCcHHHHHHHHHHHHHHHhCcCCEEEEEEECCCCC-CCCcCCccchhhhcchHHHHhcCCCCccCCEEEEE
Confidence 26899999999999999999999999887558999999998532 223467777765431 111111 111246789999
Q ss_pred CCcchHHHHHHHHHHH
Q 043022 320 GLRGMEKGIDDIMVSL 335 (361)
Q Consensus 320 Gp~~m~~~v~~~L~~~ 335 (361)
||++|++++.+.|.+.
T Consensus 213 Gp~~Mv~~~~~~l~~~ 228 (248)
T PRK10926 213 GNPQMVRDTQQLLKET 228 (248)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999999764
No 34
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=100.00 E-value=1e-37 Score=281.45 Aligned_cols=219 Identities=24% Similarity=0.412 Sum_probs=183.4
Q ss_pred eeEEEEeEeeecCCCCCCceEEEEeeCCC--ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEE
Q 043022 85 YIGRCLLNTKITGDDAPGETWHMVFSTEG--EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCV 162 (361)
Q Consensus 85 ~~~~v~~~~~~~~~~~~~~~~~l~l~~~~--~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V 162 (361)
+.++|++++.++++ +++++|+.+. .+.|+||||+.|.+++.. ..|+|||+|.|. +.+.++|+|
T Consensus 1 ~~~~v~~~~~~~~~-----~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~------~~r~ySi~s~~~----~~~~l~l~v 65 (232)
T cd06212 1 FVGTVVAVEALTHD-----IRRLRLRLEEPEPIKFFAGQYVDITVPGTE------ETRSFSMANTPA----DPGRLEFII 65 (232)
T ss_pred CceEEEEEeecCCC-----eEEEEEEcCCCCcCCcCCCCeEEEEcCCCC------cccccccCCCCC----CCCEEEEEE
Confidence 36899999999999 9999998755 578999999999987432 589999999986 458999999
Q ss_pred EEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhccccccc
Q 043022 163 KRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKF 241 (361)
Q Consensus 163 ~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~ 241 (361)
++++ +|.+|++|++ +++|++|.|.||+|.++..+ ...+++|||||||||||+++|+++++..+.
T Consensus 66 k~~~---------~G~~s~~l~~~l~~G~~v~i~gP~G~~~~~~-~~~~~~l~iagG~Giap~~~~l~~~~~~~~----- 130 (232)
T cd06212 66 KKYP---------GGLFSSFLDDGLAVGDPVTVTGPYGTCTLRE-SRDRPIVLIGGGSGMAPLLSLLRDMAASGS----- 130 (232)
T ss_pred EECC---------CCchhhHHhhcCCCCCEEEEEcCcccceecC-CCCCcEEEEecCcchhHHHHHHHHHHhcCC-----
Confidence 9976 7999999997 99999999999999876543 345799999999999999999999886532
Q ss_pred CCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCc--ccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEE
Q 043022 242 NGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQ--KNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMC 319 (361)
Q Consensus 242 ~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~--~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvC 319 (361)
.++++|+|++|+.++++|.++|++|+++++ +++++++++++. +.|.+..+++++.+.+.. ..+ .+..+|+|
T Consensus 131 ~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~-~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~----~~~--~~~~v~~C 203 (232)
T cd06212 131 DRPVRFFYGARTARDLFYLEEIAALGEKIP-DFTFIPALSESPDDEGWSGETGLVTEVVQRNE----ATL--AGCDVYLC 203 (232)
T ss_pred CCcEEEEEeccchHHhccHHHHHHHHHhCC-CEEEEEEECCCCCCCCCcCCcccHHHHHHhhc----cCc--cCCEEEEE
Confidence 267999999999999999999999998877 899998898764 456667778776554422 112 36789999
Q ss_pred CCcchHHHHHHHHHHHHHccC
Q 043022 320 GLRGMEKGIDDIMVSLAANDG 340 (361)
Q Consensus 320 Gp~~m~~~v~~~L~~~g~~~~ 340 (361)
||++|++++.+.|.+.|....
T Consensus 204 Gp~~~~~~v~~~l~~~G~~~~ 224 (232)
T cd06212 204 GPPPMIDAALPVLEMSGVPPD 224 (232)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 999999999999999988753
No 35
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=100.00 E-value=1.4e-37 Score=280.60 Aligned_cols=216 Identities=24% Similarity=0.319 Sum_probs=179.2
Q ss_pred EEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEe
Q 043022 89 CLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYT 168 (361)
Q Consensus 89 v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~ 168 (361)
|++++.++++ +++|+|+.+..+.|+||||+.|.+++.. ..|+|||+|.|. +.+.++|+||+.+
T Consensus 1 ~~~~~~~t~~-----~~~~~l~~~~~~~~~pGQ~v~l~~~~~~------~~r~ySi~s~~~----~~~~~~~~vk~~~-- 63 (232)
T cd06190 1 LVDVRELTHD-----VAEFRFALDGPADFLPGQYALLALPGVE------GARAYSMANLAN----ASGEWEFIIKRKP-- 63 (232)
T ss_pred CCceEEcCCC-----EEEEEEEcCCccccCCCCEEEEECCCCC------cccCccCCcCCC----CCCEEEEEEEEcC--
Confidence 4567888998 9999999988888999999999987532 479999999986 5689999999876
Q ss_pred cCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEE
Q 043022 169 NENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWL 247 (361)
Q Consensus 169 ~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L 247 (361)
+|.+|.+|++ +++|++|.|+||+|.++..+ +..+++|||||||||||+++|++++...... ...+++|
T Consensus 64 -------~G~~s~~l~~~~~~g~~v~v~gP~G~~~~~~-~~~~~illIagG~GiaP~~~~l~~~~~~~~~---~~~~v~l 132 (232)
T cd06190 64 -------GGAASNALFDNLEPGDELELDGPYGLAYLRP-DEDRDIVCIAGGSGLAPMLSILRGAARSPYL---SDRPVDL 132 (232)
T ss_pred -------CCcchHHHhhcCCCCCEEEEECCcccceecC-CCCCcEEEEeeCcCHHHHHHHHHHHHhcccC---CCCeEEE
Confidence 7999999997 79999999999999987654 3457999999999999999999998764211 1368999
Q ss_pred EEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcc----cCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcc
Q 043022 248 FLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQK----NEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRG 323 (361)
Q Consensus 248 ~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~----~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~ 323 (361)
+|++|+.+|++|.++|++|.+.++ +++++++++++.. .|.+.++++++.+.+...+ . ..+..||+|||++
T Consensus 133 ~~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~s~~~~~~~~~~~~~~g~v~~~l~~~~~~----~-~~~~~vyiCGp~~ 206 (232)
T cd06190 133 FYGGRTPSDLCALDELSALVALGA-RLRVTPAVSDAGSGSAAGWDGPTGFVHEVVEATLGD----R-LAEFEFYFAGPPP 206 (232)
T ss_pred EEeecCHHHHhhHHHHHHHHHhCC-CEEEEEEeCCCCCCcCCCccCCcCcHHHHHHhhccC----C-ccccEEEEECCHH
Confidence 999999999999999999998866 8999998887643 3667777887766543221 1 1468999999999
Q ss_pred hHHHHHHHHHHHHHc
Q 043022 324 MEKGIDDIMVSLAAN 338 (361)
Q Consensus 324 m~~~v~~~L~~~g~~ 338 (361)
|++++.+.|.+.|..
T Consensus 207 m~~~v~~~l~~~g~~ 221 (232)
T cd06190 207 MVDAVQRMLMIEGVV 221 (232)
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999999988653
No 36
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=100.00 E-value=5.1e-37 Score=290.93 Aligned_cols=231 Identities=19% Similarity=0.316 Sum_probs=183.5
Q ss_pred ccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEE
Q 043022 79 FKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTV 158 (361)
Q Consensus 79 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l 158 (361)
+.+..++.++|++++.++++ ++.|+|..+..++|+||||+.|.+++.. ...|+|||+|.|. +.+.+
T Consensus 4 ~~~~~~~~~~V~~i~~~t~~-----v~~l~l~~~~~~~f~pGQfv~l~~~~~~-----~~~R~ySias~p~----~~~~l 69 (332)
T PRK10684 4 PTPQCPNRMQVHSIVQETPD-----VWTISLICHDFYPYRAGQYALVSIRNSA-----ETLRAYTLSSTPG----VSEFI 69 (332)
T ss_pred cCCCCceeEEEEEEEccCCC-----eEEEEEcCCCCCCcCCCCEEEEEecCCC-----EeeeeecccCCCC----CCCcE
Confidence 34556789999999999999 9999999877788999999999986421 2469999999986 56789
Q ss_pred EEEEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhccc
Q 043022 159 SLCVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHE 237 (361)
Q Consensus 159 ~~~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~ 237 (361)
+|+||+++ +|.+|+||++ +++|++|.+.||+|+|++ +....+++|||||||||||+++|+++++....
T Consensus 70 ~i~Vk~~~---------~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l-~~~~~~~~vliAgG~GItP~~sml~~~~~~~~- 138 (332)
T PRK10684 70 TLTVRRID---------DGVGSQWLTRDVKRGDYLWLSDAMGEFTC-DDKAEDKYLLLAAGCGVTPIMSMRRWLLKNRP- 138 (332)
T ss_pred EEEEEEcC---------CCcchhHHHhcCCCCCEEEEeCCcccccc-CCCCCCcEEEEecCcCcchHHHHHHHHHhcCC-
Confidence 99999987 8999999975 999999999999998654 33445799999999999999999998875432
Q ss_pred ccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHH-hHHHHHHHhccCCeEE
Q 043022 238 DYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAE-YANELWELLKKDNTYV 316 (361)
Q Consensus 238 ~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~-~~~~~~~~l~~~~~~v 316 (361)
..+++|+|++|+.+|++|.+||++|.++++ ++++++..++.. .+++.++++.+ ...+....+ .+..+
T Consensus 139 ----~~~v~l~y~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~~~~~-----~~~~~~grl~~~~l~~~~~~~--~~~~v 206 (332)
T PRK10684 139 ----QADVQVIFNVRTPQDVIFADEWRQLKQRYP-QLNLTLVAENNA-----TEGFIAGRLTRELLQQAVPDL--ASRTV 206 (332)
T ss_pred ----CCCEEEEEeCCChHHhhhHHHHHHHHHHCC-CeEEEEEeccCC-----CCCccccccCHHHHHHhcccc--cCCEE
Confidence 268999999999999999999999999888 888887766532 22333444432 112211112 36789
Q ss_pred EEECCcchHHHHHHHHHHHHHccC-CCHHHH
Q 043022 317 YMCGLRGMEKGIDDIMVSLAANDG-IDWLDY 346 (361)
Q Consensus 317 yvCGp~~m~~~v~~~L~~~g~~~~-~~~~~~ 346 (361)
|+|||++|++++.+.|.+.|.... +..|.|
T Consensus 207 yiCGP~~m~~~v~~~l~~~Gv~~~~i~~E~F 237 (332)
T PRK10684 207 MTCGPAPYMDWVEQEVKALGVTADRFFKEKF 237 (332)
T ss_pred EEECCHHHHHHHHHHHHHcCCCHHHeEeecc
Confidence 999999999999999999988744 444444
No 37
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=100.00 E-value=9.6e-37 Score=273.53 Aligned_cols=215 Identities=24% Similarity=0.356 Sum_probs=181.4
Q ss_pred EEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEe
Q 043022 89 CLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYT 168 (361)
Q Consensus 89 v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~ 168 (361)
|++++.++++ ++.++|+.+..+.|+||||+.|.+++.. . ..|+|||+|.|. +.+.++|+|+..+
T Consensus 1 v~~~~~~~~~-----~~~~~l~~~~~~~~~pGq~i~l~~~~~~----~-~~r~ysi~s~~~----~~~~~~~~i~~~~-- 64 (224)
T cd06187 1 VVSVERLTHD-----IAVVRLQLDQPLPFWAGQYVNVTVPGRP----R-TWRAYSPANPPN----EDGEIEFHVRAVP-- 64 (224)
T ss_pred CeeeeecCCC-----EEEEEEEeCCCCCcCCCceEEEEcCCCC----C-cceeccccCCCC----CCCEEEEEEEeCC--
Confidence 4677888888 9999999888788999999999987532 1 479999999986 5589999999875
Q ss_pred cCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEE
Q 043022 169 NENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWL 247 (361)
Q Consensus 169 ~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L 247 (361)
+|.+|+||++ +++|+.|.|.||+|.++..+ ...+++|||||||||||+++|++++..... ..+++|
T Consensus 65 -------~G~~s~~l~~~l~~G~~v~i~gP~G~~~~~~-~~~~~~lliagG~GI~p~~sll~~~~~~~~-----~~~v~l 131 (224)
T cd06187 65 -------GGRVSNALHDELKVGDRVRLSGPYGTFYLRR-DHDRPVLCIAGGTGLAPLRAIVEDALRRGE-----PRPVHL 131 (224)
T ss_pred -------CCcchHHHhhcCccCCEEEEeCCccceEecC-CCCCCEEEEecCcCHHHHHHHHHHHHhcCC-----CCCEEE
Confidence 7999999998 99999999999999866543 335789999999999999999999876431 368999
Q ss_pred EEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHH
Q 043022 248 FLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKG 327 (361)
Q Consensus 248 ~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~ 327 (361)
+|++|+.++++|.++|++|.++++ ++++++++++++..|.+.++++++.+.+... ...+..+|+|||+.|+++
T Consensus 132 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~~v~vcGp~~~~~~ 204 (224)
T cd06187 132 FFGARTERDLYDLEGLLALAARHP-WLRVVPVVSHEEGAWTGRRGLVTDVVGRDGP------DWADHDIYICGPPAMVDA 204 (224)
T ss_pred EEecCChhhhcChHHHHHHHHhCC-CeEEEEEeCCCCCccCCCcccHHHHHHHhcc------ccccCEEEEECCHHHHHH
Confidence 999999999999999999998877 8999988888766677788888877654321 114678999999999999
Q ss_pred HHHHHHHHHHcc
Q 043022 328 IDDIMVSLAAND 339 (361)
Q Consensus 328 v~~~L~~~g~~~ 339 (361)
+++.|++.|.+.
T Consensus 205 v~~~l~~~G~~~ 216 (224)
T cd06187 205 TVDALLARGAPP 216 (224)
T ss_pred HHHHHHHcCCCH
Confidence 999999987764
No 38
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=100.00 E-value=1e-36 Score=283.13 Aligned_cols=221 Identities=24% Similarity=0.300 Sum_probs=173.8
Q ss_pred CCCCeeEEEEeEeeecCCCCCCceEEEEee--CC---CccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCC
Q 043022 81 PKTPYIGRCLLNTKITGDDAPGETWHMVFS--TE---GEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDS 155 (361)
Q Consensus 81 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~--~~---~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~ 155 (361)
|...+.++|+++++++++ +..++|+ .+ +.++|+||||+.|.+++. ..|+|||+|.|. +.
T Consensus 2 ~~~~~~~~V~~~~~~t~d-----~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~-------~~~pySias~p~----~~ 65 (289)
T PRK08345 2 PYALHDAKILEVYDLTER-----EKLFLLRFEDPELAESFTFKPGQFVQVTIPGV-------GEVPISICSSPT----RK 65 (289)
T ss_pred CcCceeEEEEEEEecCCC-----CCEEEEEEeCccccCCCCcCCCCEEEEEcCCC-------CceeeEecCCCC----CC
Confidence 344677999999999998 5555555 34 246799999999998653 247999999986 56
Q ss_pred cEEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhc
Q 043022 156 KTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK 235 (361)
Q Consensus 156 ~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~ 235 (361)
+.++|+||+ .|.+|.+|+++++|++|.|+||+|.+|.++....++++|||||||||||++|+++++...
T Consensus 66 ~~l~l~Ik~-----------~G~~S~~L~~l~~Gd~v~v~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~ 134 (289)
T PRK08345 66 GFFELCIRR-----------AGRVTTVIHRLKEGDIVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNR 134 (289)
T ss_pred CEEEEEEEe-----------CChHHHHHHhCCCCCEEEEeCCCCCCCCcccccCceEEEEecccchhHHHHHHHHHHhcC
Confidence 899999997 489999999999999999999999877654334479999999999999999999887643
Q ss_pred ccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCC------------CeeEecchHHHhHH
Q 043022 236 HEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKG------------EKMYIQTRMAEYAN 303 (361)
Q Consensus 236 ~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g------------~~~~v~~~l~~~~~ 303 (361)
.. .++++|+|++|+.+|++|.+||++|+++++ +|++++.+++++ .|.+ .++++.+.+.+.
T Consensus 135 ~~----~~~v~l~~~~r~~~d~~~~deL~~l~~~~~-~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~g~v~~~~~~~-- 206 (289)
T PRK08345 135 WK----YGNITLIYGAKYYEDLLFYDELIKDLAEAE-NVKIIQSVTRDP-EWPGCHGLPQGFIERVCKGVVTDLFREA-- 206 (289)
T ss_pred CC----CCcEEEEEecCCHHHhhHHHHHHHHHhcCC-CEEEEEEecCCC-CCcCccccccccccccccCchhhhhhhc--
Confidence 11 268999999999999999999999988777 899999999853 3322 123333333221
Q ss_pred HHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHccC
Q 043022 304 ELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDG 340 (361)
Q Consensus 304 ~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~ 340 (361)
.....+..+|+|||+.|++++.+.|.+.|.+.+
T Consensus 207 ----~~~~~~~~vyiCGP~~m~~~v~~~L~~~Gv~~~ 239 (289)
T PRK08345 207 ----NTDPKNTYAAICGPPVMYKFVFKELINRGYRPE 239 (289)
T ss_pred ----CCCccccEEEEECCHHHHHHHHHHHHHcCCCHH
Confidence 112245789999999999999999999887654
No 39
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=100.00 E-value=5.2e-36 Score=270.72 Aligned_cols=223 Identities=23% Similarity=0.339 Sum_probs=182.8
Q ss_pred eeEEEEeEeeecCCCCCCceEEEEeeCCCc--cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEE
Q 043022 85 YIGRCLLNTKITGDDAPGETWHMVFSTEGE--VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCV 162 (361)
Q Consensus 85 ~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~--l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V 162 (361)
..++|++++.++++ +++++|+.+.. +.|+||||+.|.++..+ + ....|+|||+|.|. +.+.++|+|
T Consensus 2 ~~~~v~~~~~~~~~-----~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--~-~~~~r~ySi~s~~~----~~~~l~l~v 69 (235)
T cd06217 2 RVLRVTEIIQETPT-----VKTFRLAVPDGVPPPFLAGQHVDLRLTAID--G-YTAQRSYSIASSPT----QRGRVELTV 69 (235)
T ss_pred ceEEEEEEEecCCC-----eEEEEEECCCCCcCCcCCcCeEEEEEecCC--C-ceeeeeecccCCCC----CCCeEEEEE
Confidence 35899999999999 99999999876 78999999999986422 1 22469999999986 567999999
Q ss_pred EEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhccccccc
Q 043022 163 KRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKF 241 (361)
Q Consensus 163 ~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~ 241 (361)
+..+ +|.+|.+|++ +++|+.|.|.||+|.+.+.+ ...++++||||||||||+++++++++....
T Consensus 70 ~~~~---------~G~~s~~l~~~l~~Gd~v~i~gP~G~~~~~~-~~~~~~vliagG~Giap~~~~~~~~~~~~~----- 134 (235)
T cd06217 70 KRVP---------GGEVSPYLHDEVKVGDLLEVRGPIGTFTWNP-LHGDPVVLLAGGSGIVPLMSMIRYRRDLGW----- 134 (235)
T ss_pred EEcC---------CCcchHHHHhcCCCCCEEEEeCCceeeEeCC-CCCceEEEEecCcCccHHHHHHHHHHhcCC-----
Confidence 9976 7899999987 89999999999999865433 345789999999999999999999876532
Q ss_pred CCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCC-cccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEEC
Q 043022 242 NGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSRE-QKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCG 320 (361)
Q Consensus 242 ~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~-~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCG 320 (361)
..+++|+|++|+.++++|.++|.++.++++ +++++..++++ .+.|.+.++++.+.+.+ ++.. ...+..+|+||
T Consensus 135 ~~~i~l~~~~r~~~~~~~~~el~~~~~~~~-~~~~~~~~s~~~~~~~~~~~g~~~~~~l~---~~~~--~~~~~~v~icG 208 (235)
T cd06217 135 PVPFRLLYSARTAEDVIFRDELEQLARRHP-NLHVTEALTRAAPADWLGPAGRITADLIA---ELVP--PLAGRRVYVCG 208 (235)
T ss_pred CceEEEEEecCCHHHhhHHHHHHHHHHHCC-CeEEEEEeCCCCCCCcCCcCcEeCHHHHH---hhCC--CccCCEEEEEC
Confidence 268999999999999999999999998877 89999988886 45566666777654422 1111 11467999999
Q ss_pred CcchHHHHHHHHHHHHHccC
Q 043022 321 LRGMEKGIDDIMVSLAANDG 340 (361)
Q Consensus 321 p~~m~~~v~~~L~~~g~~~~ 340 (361)
|+.|++++.+.|.+.|.+.+
T Consensus 209 p~~m~~~v~~~l~~~Gv~~~ 228 (235)
T cd06217 209 PPAFVEAATRLLLELGVPRD 228 (235)
T ss_pred CHHHHHHHHHHHHHcCCCHH
Confidence 99999999999999887643
No 40
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=100.00 E-value=2.3e-36 Score=272.29 Aligned_cols=218 Identities=23% Similarity=0.415 Sum_probs=177.5
Q ss_pred EEEeEeeecCCCCCCceEEEEeeCCCc--cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEe
Q 043022 88 RCLLNTKITGDDAPGETWHMVFSTEGE--VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRL 165 (361)
Q Consensus 88 ~v~~~~~~~~~~~~~~~~~l~l~~~~~--l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~ 165 (361)
+|++++.++++ ++.++|+.+.. +.|+||||+.|.++..+ ....|+|||+|.|. +.+.++|+|++.
T Consensus 2 ~v~~~~~~t~~-----~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~----~~~~R~ySi~s~~~----~~~~l~~~vk~~ 68 (231)
T cd06215 2 RCVKIIQETPD-----VKTFRFAAPDGSLFAYKPGQFLTLELEIDG----ETVYRAYTLSSSPS----RPDSLSITVKRV 68 (231)
T ss_pred eEEEEEEcCCC-----eEEEEEECCCCCcCCcCCCCeEEEEEecCC----CeEEEeeecccCCC----CCCcEEEEEEEc
Confidence 68899999999 99999999875 78999999999986432 22479999999986 567899999987
Q ss_pred eEecCCCceecCccchhhh-cCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCe
Q 043022 166 VYTNENGEIVKGVCSNFLC-DLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGL 244 (361)
Q Consensus 166 ~~~~~~~~~~~G~~S~~L~-~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~ 244 (361)
+ +|.+|.||+ .+++|+.|.|.||+|.+.. +....+++|||||||||||+++|++++...+. ..+
T Consensus 69 ~---------~G~~s~~l~~~~~~G~~v~i~gP~G~f~~-~~~~~~~~vlIagG~Giap~~~~l~~~~~~~~-----~~~ 133 (231)
T cd06215 69 P---------GGLVSNWLHDNLKVGDELWASGPAGEFTL-IDHPADKLLLLSAGSGITPMMSMARWLLDTRP-----DAD 133 (231)
T ss_pred C---------CCcchHHHHhcCCCCCEEEEEcCcceeEe-CCCCCCcEEEEecCcCcchHHHHHHHHHhcCC-----CCc
Confidence 6 799999998 4999999999999998544 33336899999999999999999999876432 267
Q ss_pred EEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCccc-CCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcc
Q 043022 245 AWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKN-EKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRG 323 (361)
Q Consensus 245 i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~-~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~ 323 (361)
++|+|++|+.++++|.++|++|.++++ ++++++++++++.. |.+..+++...+.+ +..... .+..+|+|||++
T Consensus 134 v~l~~~~r~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~---~~~~~~--~~~~v~icGp~~ 207 (231)
T cd06215 134 IVFIHSARSPADIIFADELEELARRHP-NFRLHLILEQPAPGAWGGYRGRLNAELLA---LLVPDL--KERTVFVCGPAG 207 (231)
T ss_pred EEEEEecCChhhhhHHHHHHHHHHHCC-CeEEEEEEccCCCCcccccCCcCCHHHHH---HhcCCc--cCCeEEEECCHH
Confidence 999999999999999999999999877 89999999887553 66666666542221 111111 346899999999
Q ss_pred hHHHHHHHHHHHHHcc
Q 043022 324 MEKGIDDIMVSLAAND 339 (361)
Q Consensus 324 m~~~v~~~L~~~g~~~ 339 (361)
|++++.+.|.+.|...
T Consensus 208 m~~~~~~~l~~~gv~~ 223 (231)
T cd06215 208 FMKAVKSLLAELGFPM 223 (231)
T ss_pred HHHHHHHHHHHcCCCH
Confidence 9999999999887653
No 41
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=100.00 E-value=3.5e-36 Score=271.26 Aligned_cols=217 Identities=23% Similarity=0.394 Sum_probs=175.8
Q ss_pred EEEeEeeecCCCCCCceEEEEeeCCCc--cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEe
Q 043022 88 RCLLNTKITGDDAPGETWHMVFSTEGE--VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRL 165 (361)
Q Consensus 88 ~v~~~~~~~~~~~~~~~~~l~l~~~~~--l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~ 165 (361)
+|++++.++++ +++++|+.+.. +.|+||||+.|.++..+ ....|+|||+|.+ ..+.++|+|+++
T Consensus 2 ~v~~i~~~t~~-----~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~----~~~~r~ySi~s~~-----~~~~l~~~v~~~ 67 (231)
T cd06191 2 RVAEVRSETPD-----AVTIVFAVPGPLQYGFRPGQHVTLKLDFDG----EELRRCYSLCSSP-----APDEISITVKRV 67 (231)
T ss_pred EEEEEEecCCC-----cEEEEEeCCCCCCCCCCCCCeEEEEEecCC----eEEeeeeeccCCC-----CCCeEEEEEEEC
Confidence 58899999999 99999998764 57999999999975322 2257999999987 357899999997
Q ss_pred eEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCe
Q 043022 166 VYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGL 244 (361)
Q Consensus 166 ~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~ 244 (361)
+ +|.+|+||++ +++|++|.|.||+|.+.+.+ ....++|||||||||||+++|+++++.... ..+
T Consensus 68 ~---------~G~~s~~l~~~~~~Gd~v~i~gP~G~f~l~~-~~~~~~lliagG~Gitp~~s~~~~~~~~~~-----~~~ 132 (231)
T cd06191 68 P---------GGRVSNYLREHIQPGMTVEVMGPQGHFVYQP-QPPGRYLLVAAGSGITPLMAMIRATLQTAP-----ESD 132 (231)
T ss_pred C---------CCccchHHHhcCCCCCEEEEeCCccceEeCC-CCCCcEEEEecCccHhHHHHHHHHHHhcCC-----CCC
Confidence 6 7999999985 99999999999999865443 345789999999999999999998875432 268
Q ss_pred EEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCc--ccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCc
Q 043022 245 AWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQ--KNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLR 322 (361)
Q Consensus 245 i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~--~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~ 322 (361)
+.|+|++|+.++++|.+||++|.++++ ++++++++++++ ..|.+.++++.+.+.+. +.+ ...+..+|+|||+
T Consensus 133 v~l~~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~---~~~--~~~~~~vyicGp~ 206 (231)
T cd06191 133 FTLIHSARTPADMIFAQELRELADKPQ-RLRLLCIFTRETLDSDLLHGRIDGEQSLGAA---LIP--DRLEREAFICGPA 206 (231)
T ss_pred EEEEEecCCHHHHhHHHHHHHHHHhCC-CeEEEEEECCCCCCccccCCcccccHHHHHH---hCc--cccCCeEEEECCH
Confidence 999999999999999999999998877 999999999763 34555666665444321 111 1125789999999
Q ss_pred chHHHHHHHHHHHHHcc
Q 043022 323 GMEKGIDDIMVSLAAND 339 (361)
Q Consensus 323 ~m~~~v~~~L~~~g~~~ 339 (361)
.|++++++.|.+.|...
T Consensus 207 ~mv~~~~~~l~~~G~~~ 223 (231)
T cd06191 207 GMMDAVETALKELGMPP 223 (231)
T ss_pred HHHHHHHHHHHHcCCCH
Confidence 99999999999887764
No 42
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=100.00 E-value=6.4e-36 Score=267.91 Aligned_cols=213 Identities=22% Similarity=0.371 Sum_probs=173.5
Q ss_pred EEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEe
Q 043022 89 CLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYT 168 (361)
Q Consensus 89 v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~ 168 (361)
|++++.++++ ++.++|+.+..+.|+||||+.|.+++. ..|+|||+|.|. +.+.++|+|++.+
T Consensus 1 V~~~~~~~~~-----~~~i~l~~~~~~~~~pGQ~v~l~~~~~-------~~r~ySi~s~~~----~~~~~~~~i~~~~-- 62 (222)
T cd06194 1 VVSLQRLSPD-----VLRVRLEPDRPLPYLPGQYVNLRRAGG-------LARSYSPTSLPD----GDNELEFHIRRKP-- 62 (222)
T ss_pred CceeeecCCC-----EEEEEEecCCCCCcCCCCEEEEEcCCC-------CceeeecCCCCC----CCCEEEEEEEecc--
Confidence 4567788888 999999998888899999999998642 469999999986 4478999999876
Q ss_pred cCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEE
Q 043022 169 NENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWL 247 (361)
Q Consensus 169 ~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L 247 (361)
+|.+|.||++ +++|+.|.|.||+|+++..+....++++||||||||||+++++++++..+. .++++|
T Consensus 63 -------~G~~s~~l~~~~~~G~~v~i~gP~G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~~-----~~~v~l 130 (222)
T cd06194 63 -------NGAFSGWLGEEARPGHALRLQGPFGQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQGH-----QGEIRL 130 (222)
T ss_pred -------CCccchHHHhccCCCCEEEEecCcCCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcCC-----CccEEE
Confidence 7999999998 799999999999999877653455799999999999999999999875432 368999
Q ss_pred EEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHH
Q 043022 248 FLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKG 327 (361)
Q Consensus 248 ~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~ 327 (361)
+|++|+.++++|.+||++|+++++ +++++.++++++..+.. .++.+ +.+. +. ... .+..+|+|||+.|+++
T Consensus 131 ~~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~~~~~~~~~~--~~~~~-~~~~---~~-~~~-~~~~vyicGp~~m~~~ 201 (222)
T cd06194 131 VHGARDPDDLYLHPALLWLAREHP-NFRYIPCVSEGSQGDPR--VRAGR-IAAH---LP-PLT-RDDVVYLCGAPSMVNA 201 (222)
T ss_pred EEecCChhhccCHHHHHHHHHHCC-CeEEEEEEccCCCCCcc--cccch-hhhh---hc-ccc-CCCEEEEeCCHHHHHH
Confidence 999999999999999999998877 89999988886543321 11221 2111 11 122 4688999999999999
Q ss_pred HHHHHHHHHHccC
Q 043022 328 IDDIMVSLAANDG 340 (361)
Q Consensus 328 v~~~L~~~g~~~~ 340 (361)
+++.|.+.|.+..
T Consensus 202 ~~~~L~~~Gv~~~ 214 (222)
T cd06194 202 VRRRAFLAGAPMK 214 (222)
T ss_pred HHHHHHHcCCCHH
Confidence 9999999887653
No 43
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=100.00 E-value=1.2e-35 Score=265.81 Aligned_cols=216 Identities=32% Similarity=0.507 Sum_probs=174.5
Q ss_pred eEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecC
Q 043022 91 LNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNE 170 (361)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~ 170 (361)
.++.++++ ++.++|+.+..++|+||||+.|.++..+ ....|+|||+|.|. +.+.++|+|+..+
T Consensus 2 ~~~~~~~~-----~~~~~l~~~~~~~~~pGQ~v~l~~~~~~----~~~~r~ySi~s~~~----~~~~~~l~vk~~~---- 64 (223)
T cd00322 2 ATEDVTDD-----VRLFRLQLPNGFSFKPGQYVDLHLPGDG----RGLRRAYSIASSPD----EEGELELTVKIVP---- 64 (223)
T ss_pred ceEEecCC-----eEEEEEecCCCCCcCCCcEEEEEecCCC----CcceeeeeccCCCC----CCCeEEEEEEEeC----
Confidence 35567777 9999999988788999999999987532 23689999999985 4589999999986
Q ss_pred CCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEe
Q 043022 171 NGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLG 250 (361)
Q Consensus 171 ~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g 250 (361)
.|.+|+||+++++|++|.|.||+|+++.. ....+++|||||||||||+++|++++..... .++++|+|+
T Consensus 65 -----~G~~s~~l~~~~~G~~v~i~gP~G~~~~~-~~~~~~~v~ia~G~Giap~~~~l~~~~~~~~-----~~~v~l~~~ 133 (223)
T cd00322 65 -----GGPFSAWLHDLKPGDEVEVSGPGGDFFLP-LEESGPVVLIAGGIGITPFRSMLRHLAADKP-----GGEITLLYG 133 (223)
T ss_pred -----CCchhhHHhcCCCCCEEEEECCCcccccC-cccCCcEEEEecCCchhHHHHHHHHHHhhCC-----CCcEEEEEe
Confidence 79999999999999999999999997643 3556899999999999999999999876531 368999999
Q ss_pred ccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHH
Q 043022 251 VPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDD 330 (361)
Q Consensus 251 ~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~ 330 (361)
+|+.++++|.++|++|.+.++ +++++++++++...+.+..+++.. .+..... .....+..+|+|||++|++++.+
T Consensus 134 ~r~~~~~~~~~el~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~yvCGp~~m~~~~~~ 208 (223)
T cd00322 134 ARTPADLLFLDELEELAKEGP-NFRLVLALSRESEAKLGPGGRIDR--EAEILAL--LPDDSGALVYICGPPAMAKAVRE 208 (223)
T ss_pred cCCHHHhhHHHHHHHHHHhCC-CeEEEEEecCCCCCCCcccceeeH--HHHHHhh--cccccCCEEEEECCHHHHHHHHH
Confidence 999999999999999998776 999999999876655444333321 0111111 11225789999999999999999
Q ss_pred HHHHHHHcc
Q 043022 331 IMVSLAAND 339 (361)
Q Consensus 331 ~L~~~g~~~ 339 (361)
.|.+.|...
T Consensus 209 ~L~~~gv~~ 217 (223)
T cd00322 209 ALVSLGVPE 217 (223)
T ss_pred HHHHcCCCH
Confidence 999987653
No 44
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=100.00 E-value=3.3e-36 Score=274.82 Aligned_cols=213 Identities=23% Similarity=0.380 Sum_probs=176.2
Q ss_pred EEeEeeecCCCCCCceEEEEeeCCC----ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEE
Q 043022 89 CLLNTKITGDDAPGETWHMVFSTEG----EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKR 164 (361)
Q Consensus 89 v~~~~~~~~~~~~~~~~~l~l~~~~----~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~ 164 (361)
|++++.++++ +..++|+.+. .+.|+||||+.|.++... .|+|||+|.|. +.+.++|+|++
T Consensus 1 v~~i~~~t~~-----v~~~~l~~~~~~~~~~~~~pGQ~i~l~~~~~~-------~~pySi~s~~~----~~~~l~~~Ik~ 64 (253)
T cd06221 1 IVEVVDETED-----IKTFTLRLEDDDEELFTFKPGQFVMLSLPGVG-------EAPISISSDPT----RRGPLELTIRR 64 (253)
T ss_pred CceEEeccCC-----ceEEEEEeCCCccccCCcCCCCEEEEEcCCCC-------ccceEecCCCC----CCCeEEEEEEe
Confidence 4577888887 7777777644 378999999999987432 48999999986 46899999997
Q ss_pred eeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCe
Q 043022 165 LVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGL 244 (361)
Q Consensus 165 ~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~ 244 (361)
.|.+|++|+++++|++|.|+||+|++|.++....+++||||+||||||+++|+++++..... .++
T Consensus 65 -----------~G~~S~~L~~l~~G~~v~i~gP~G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~~----~~~ 129 (253)
T cd06221 65 -----------VGRVTEALHELKPGDTVGLRGPFGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNRED----YGK 129 (253)
T ss_pred -----------CChhhHHHHcCCCCCEEEEECCcCCCcccccccCCeEEEEccccchhHHHHHHHHHHhcccc----CCc
Confidence 48899999999999999999999997776543568999999999999999999998865321 268
Q ss_pred EEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcch
Q 043022 245 AWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGM 324 (361)
Q Consensus 245 i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m 324 (361)
++|+|++|+.++++|.++|++|.++ + ++++.++++++.+.|.+..+++++.+.+.. ....+..||+|||+.|
T Consensus 130 i~Li~~~r~~~~~~~~~~L~~l~~~-~-~~~~~~~~s~~~~~~~~~~g~v~~~l~~~~------~~~~~~~vyicGp~~m 201 (253)
T cd06221 130 VTLLYGARTPEDLLFKEELKEWAKR-S-DVEVILTVDRAEEGWTGNVGLVTDLLPELT------LDPDNTVAIVCGPPIM 201 (253)
T ss_pred EEEEEecCChHHcchHHHHHHHHhc-C-CeEEEEEeCCCCCCccCCccccchhHHhcC------CCcCCcEEEEECCHHH
Confidence 9999999999999999999999987 5 899999999877777777788877665422 1114678999999999
Q ss_pred HHHHHHHHHHHHHccC
Q 043022 325 EKGIDDIMVSLAANDG 340 (361)
Q Consensus 325 ~~~v~~~L~~~g~~~~ 340 (361)
++++.+.|.+.|.+.+
T Consensus 202 v~~~~~~L~~~Gv~~~ 217 (253)
T cd06221 202 MRFVAKELLKLGVPEE 217 (253)
T ss_pred HHHHHHHHHHcCCCHH
Confidence 9999999999887654
No 45
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=100.00 E-value=2.2e-35 Score=276.61 Aligned_cols=228 Identities=15% Similarity=0.162 Sum_probs=178.4
Q ss_pred CCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC--ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEE
Q 043022 81 PKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG--EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTV 158 (361)
Q Consensus 81 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~--~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l 158 (361)
..+..+++|.+++.++++ +++|+|+.|. .+.|.||||+.+.++....++ ....|+|||+|.|. +.+.+
T Consensus 49 ~~~~~~~~V~~i~~~t~d-----v~~f~f~lp~~~~~~f~pGQ~l~l~~~~~~~~~-~~~~R~YSiaS~p~----~~~~l 118 (325)
T PTZ00274 49 SQRYEPYQLGEVIPITHD-----TALFRFLLHSEEEFNLKPCSTLQACYKYGVQPM-DQCQRFYTPVTANH----TKGYF 118 (325)
T ss_pred CCceEEEEEEEEEEeCCC-----eEEEEEeCCcccccCCCCccEEEEEEecCCCCC-CEEEEeeecCCCCC----CCCeE
Confidence 345778999999999999 9999998765 578999999998765221111 12579999999986 56899
Q ss_pred EEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccc
Q 043022 159 SLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHED 238 (361)
Q Consensus 159 ~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~ 238 (361)
+|+||+++ +|.+|+||+++++||+|.+.||.|.+...+ +..+++|||||||||||+++|+++++......
T Consensus 119 e~~IK~~~---------~G~~S~~L~~lk~Gd~v~v~GP~f~~~~~~-~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~ 188 (325)
T PTZ00274 119 DIIVKRKK---------DGLMTNHLFGMHVGDKLLFRSVTFKIQYRP-NRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDS 188 (325)
T ss_pred EEEEEEcC---------CCcccHHHhcCCCCCEEEEeCCeeecccCC-CCCceEEEEeCCcchhHHHHHHHHHHhccccc
Confidence 99999987 899999999999999999999987644333 34479999999999999999999987653211
Q ss_pred -cccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCC--cccCCCCeeEecchHHHhHHHHHHHhccCCeE
Q 043022 239 -YKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSRE--QKNEKGEKMYIQTRMAEYANELWELLKKDNTY 315 (361)
Q Consensus 239 -~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~--~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~ 315 (361)
.....+++|+|++|+.+|++|.++|++|+++++++|+++++++++ .+.|.+..++|.+.+.. ++..........
T Consensus 189 ~~~~~~~v~Llyg~R~~~di~~~~eL~~La~~~~~~f~v~~~ls~~~~~~~w~g~~G~V~~~ll~---~~~~~~~~~~~~ 265 (325)
T PTZ00274 189 GEVDRTKLSFLFCNRTERHILLKGLFDDLARRYSNRFKVYYTIDQAVEPDKWNHFLGYVTKEMVR---RTMPAPEEKKKI 265 (325)
T ss_pred ccCCCCeEEEEEEcCCHHHhhHHHHHHHHHHhCCCcEEEEEEeCCCCcccCCCCCCCccCHHHHH---HhcCCCccCCcE
Confidence 011258999999999999999999999999888679999999865 34677777888765422 111111112357
Q ss_pred EEEECCcchHHHHHHH
Q 043022 316 VYMCGLRGMEKGIDDI 331 (361)
Q Consensus 316 vyvCGp~~m~~~v~~~ 331 (361)
+|+|||+.|++++...
T Consensus 266 vylCGPp~Mm~av~~~ 281 (325)
T PTZ00274 266 IMLCGPDQLLNHVAGT 281 (325)
T ss_pred EEEeCCHHHHHHhcCC
Confidence 9999999999999654
No 46
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=100.00 E-value=3.7e-35 Score=267.24 Aligned_cols=222 Identities=19% Similarity=0.299 Sum_probs=178.7
Q ss_pred CeeEEEEeEeeecCCCCCCceEEEEeeCCCc---cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEE
Q 043022 84 PYIGRCLLNTKITGDDAPGETWHMVFSTEGE---VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSL 160 (361)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~---l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~ 160 (361)
...++|++++.++++ +++|+|+.+.. +.|+||||+.|.++..+. .....|+|||+|.|. .+.++|
T Consensus 6 ~~~~~v~~~~~~s~~-----~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~--~~~~~R~ySi~s~~~-----~~~l~~ 73 (247)
T cd06184 6 FRPFVVARKVAESED-----ITSFYLEPADGGPLPPFLPGQYLSVRVKLPGL--GYRQIRQYSLSDAPN-----GDYYRI 73 (247)
T ss_pred cEEEEEEEEEEcCCC-----eEEEEEEeCCCCcCCCCCCCCEEEEEEecCCC--CCceeEEeEeccCCC-----CCeEEE
Confidence 567899999999999 99999998753 679999999999864321 023589999999984 459999
Q ss_pred EEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhccccc
Q 043022 161 CVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDY 239 (361)
Q Consensus 161 ~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~ 239 (361)
+||..+ +|.+|+||++ +++|++|.|.||+|.+ .++....++++||||||||||++++++++.....
T Consensus 74 ~ik~~~---------~G~~s~~l~~~~~~Gd~v~i~gP~G~~-~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~~--- 140 (247)
T cd06184 74 SVKREP---------GGLVSNYLHDNVKVGDVLEVSAPAGDF-VLDEASDRPLVLISAGVGITPMLSMLEALAAEGP--- 140 (247)
T ss_pred EEEEcC---------CCcchHHHHhcCCCCCEEEEEcCCCce-ECCCCCCCcEEEEeccccHhHHHHHHHHHHhcCC---
Confidence 999876 7999999998 9999999999999985 4443356799999999999999999999876421
Q ss_pred ccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccC----CCCeeEecchHHHhHHHHHHHhccCCeE
Q 043022 240 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNE----KGEKMYIQTRMAEYANELWELLKKDNTY 315 (361)
Q Consensus 240 ~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~----~g~~~~v~~~l~~~~~~~~~~l~~~~~~ 315 (361)
..+++|+|++|+.++++|.++|++|.++++ +++++++++++.+.+ .+..+++...+ +.+.+..++..
T Consensus 141 --~~~i~l~~~~r~~~~~~~~~~l~~l~~~~~-~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~------l~~~~~~~~~~ 211 (247)
T cd06184 141 --GRPVTFIHAARNSAVHAFRDELEELAARLP-NLKLHVFYSEPEAGDREEDYDHAGRIDLAL------LRELLLPADAD 211 (247)
T ss_pred --CCcEEEEEEcCchhhHHHHHHHHHHHhhCC-CeEEEEEECCCCcccccccccccCccCHHH------HhhccCCCCCE
Confidence 368999999999999999999999998876 999999999875432 23344444321 11112225789
Q ss_pred EEEECCcchHHHHHHHHHHHHHcc
Q 043022 316 VYMCGLRGMEKGIDDIMVSLAAND 339 (361)
Q Consensus 316 vyvCGp~~m~~~v~~~L~~~g~~~ 339 (361)
+|+|||+.|++++++.|.+.|.+.
T Consensus 212 v~icGp~~m~~~v~~~l~~~G~~~ 235 (247)
T cd06184 212 FYLCGPVPFMQAVREGLKALGVPA 235 (247)
T ss_pred EEEECCHHHHHHHHHHHHHcCCCH
Confidence 999999999999999999987764
No 47
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=100.00 E-value=2.3e-35 Score=267.52 Aligned_cols=225 Identities=22% Similarity=0.316 Sum_probs=181.0
Q ss_pred eeEEEEeEeeecCCCCCCceEEEEeeCCCc----cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEE
Q 043022 85 YIGRCLLNTKITGDDAPGETWHMVFSTEGE----VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSL 160 (361)
Q Consensus 85 ~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~----l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~ 160 (361)
+.++|++++.++++ +++++|+.+.. +.|.||||+.|.++..+ ...+|+|||+|.+. ++.++|
T Consensus 2 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~g----~~~~r~ysi~s~~~-----~~~l~~ 67 (241)
T cd06214 2 HPLTVAEVVRETAD-----AVSITFDVPEELRDAFRYRPGQFLTLRVPIDG----EEVRRSYSICSSPG-----DDELRI 67 (241)
T ss_pred ceEEEEEEEecCCC-----eEEEEEecCcccCCCCCcCCCCeEEEEeecCC----CeeeeeeeecCCCC-----CCcEEE
Confidence 46789999999998 99999999864 47999999999986321 23589999999874 348999
Q ss_pred EEEEeeEecCCCceecCccchhhh-cCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhccccc
Q 043022 161 CVKRLVYTNENGEIVKGVCSNFLC-DLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDY 239 (361)
Q Consensus 161 ~V~~~~~~~~~~~~~~G~~S~~L~-~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~ 239 (361)
+|++++ +|.+|.||+ ++++|++|.|.||+|.++..+.+..+++||||+||||||++++++++.....
T Consensus 68 ~i~~~~---------~G~~s~~l~~~~~~G~~v~i~gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~~--- 135 (241)
T cd06214 68 TVKRVP---------GGRFSNWANDELKAGDTLEVMPPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALAREP--- 135 (241)
T ss_pred EEEEcC---------CCccchhHHhccCCCCEEEEeCCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcCC---
Confidence 999986 799999998 5999999999999998766543246899999999999999999999876532
Q ss_pred ccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHH-HhHHHHHHHhccCCeEEEE
Q 043022 240 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMA-EYANELWELLKKDNTYVYM 318 (361)
Q Consensus 240 ~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~-~~~~~~~~~l~~~~~~vyv 318 (361)
.++++|+|++|+.++++|.++|++|.+.+++++++..++++++..|.+..+.+...+. +..+++. ....+..||+
T Consensus 136 --~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~v~i 211 (241)
T cd06214 136 --ASRVTLVYGNRTEASVIFREELADLKARYPDRLTVIHVLSREQGDPDLLRGRLDAAKLNALLKNLL--DATEFDEAFL 211 (241)
T ss_pred --CCcEEEEEEeCCHHHhhHHHHHHHHHHhCcCceEEEEEecCCCCCcccccCccCHHHHHHhhhhhc--ccccCcEEEE
Confidence 2689999999999999999999999888777899988888876666555555553322 2111110 1124678999
Q ss_pred ECCcchHHHHHHHHHHHHHcc
Q 043022 319 CGLRGMEKGIDDIMVSLAAND 339 (361)
Q Consensus 319 CGp~~m~~~v~~~L~~~g~~~ 339 (361)
|||+.|++++.+.|++.|...
T Consensus 212 cGp~~mv~~v~~~l~~~G~~~ 232 (241)
T cd06214 212 CGPEPMMDAVEAALLELGVPA 232 (241)
T ss_pred ECCHHHHHHHHHHHHHcCCCH
Confidence 999999999999999987764
No 48
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=100.00 E-value=2.7e-35 Score=281.51 Aligned_cols=232 Identities=20% Similarity=0.335 Sum_probs=180.4
Q ss_pred eeEEEEeEeeecCCCCCCceEEEEeeCCCc----cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEE
Q 043022 85 YIGRCLLNTKITGDDAPGETWHMVFSTEGE----VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSL 160 (361)
Q Consensus 85 ~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~----l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~ 160 (361)
...+|++++.++++ ++.|+|+.+.. +.|+||||+.|.++..+ ....|+|||+|.| +++.++|
T Consensus 2 ~~~~V~~i~~~t~~-----~~~l~l~~~~~~~~~~~~~pGQ~v~l~~~~~g----~~~~R~ySi~s~p-----~~~~l~i 67 (352)
T TIGR02160 2 HRLTVAEVERLTAD-----AVAISFEIPDELAEDYRFAPGQHLTLRREVDG----EELRRSYSICSAP-----APGEIRV 67 (352)
T ss_pred eEeEEEEEEecCCC-----eEEEEEeCCccccccCCCCCCCeEEEEEecCC----cEeeeeccccCCC-----CCCcEEE
Confidence 45789999999999 99999997642 57999999999975321 2247999999988 3578999
Q ss_pred EEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCC-CCCcEEEEecCCchhhHHHHHHHHHhhcccc
Q 043022 161 CVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRD-PNATVIMLATGTGIAPFRGFLWKMFFEKHED 238 (361)
Q Consensus 161 ~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~-~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~ 238 (361)
+||+++ +|.+|.||++ +++||.|.|.||+|+|+..+.. ..+++|||||||||||+++|+++++..+.
T Consensus 68 ~vk~~~---------~G~~S~~l~~~l~~Gd~v~v~gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~~-- 136 (352)
T TIGR02160 68 AVKKIP---------GGLFSTWANDEIRPGDTLEVMAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAEP-- 136 (352)
T ss_pred EEEEeC---------CCcchHHHHhcCCCCCEEEEeCCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcCC--
Confidence 999986 7999999984 9999999999999986544321 23789999999999999999998876432
Q ss_pred cccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEec-chHHHhHHHHHHHhccCCeEEE
Q 043022 239 YKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQ-TRMAEYANELWELLKKDNTYVY 317 (361)
Q Consensus 239 ~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~-~~l~~~~~~~~~~l~~~~~~vy 317 (361)
..+++|+|++|+.+|++|.+||++|.+.++++++++.+++++...|.+..+.+. +.+.+.++++.. . .....+|
T Consensus 137 ---~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~-~-~~~~~vy 211 (352)
T TIGR02160 137 ---RSTFTLVYGNRRTASVMFAEELADLKDKHPQRFHLAHVLSREPREAPLLSGRLDGERLAALLDSLID-V-DRADEWF 211 (352)
T ss_pred ---CceEEEEEEeCCHHHHHHHHHHHHHHHhCcCcEEEEEEecCCCcCcccccCccCHHHHHHHHHhccC-c-ccCCEEE
Confidence 268999999999999999999999998887679999999987655443333332 222332222111 1 1356899
Q ss_pred EECCcchHHHHHHHHHHHHHccC-CCHHHH
Q 043022 318 MCGLRGMEKGIDDIMVSLAANDG-IDWLDY 346 (361)
Q Consensus 318 vCGp~~m~~~v~~~L~~~g~~~~-~~~~~~ 346 (361)
+|||++|++++++.|.+.|.... ++.|.|
T Consensus 212 iCGp~~m~~~v~~~L~~~Gv~~~~i~~E~F 241 (352)
T TIGR02160 212 LCGPQAMVDDAEQALTGLGVPAGRVHLELF 241 (352)
T ss_pred EECCHHHHHHHHHHHHHcCCCHHHEEEEec
Confidence 99999999999999999988643 444444
No 49
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=100.00 E-value=2.8e-35 Score=263.02 Aligned_cols=211 Identities=20% Similarity=0.274 Sum_probs=167.8
Q ss_pred eEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEe
Q 043022 86 IGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRL 165 (361)
Q Consensus 86 ~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~ 165 (361)
+++|++++.++++ ++.++|+.+..+.|+||||+.|.++..+ .+...|+|||+|.|. ++.++|+||++
T Consensus 2 ~~~v~~~~~~~~~-----~~~~~l~~~~~~~~~pGQ~v~l~~~~~~---~~~~~r~ySi~s~~~-----~~~l~~~vk~~ 68 (218)
T cd06196 2 TVTLLSIEPVTHD-----VKRLRFDKPEGYDFTPGQATEVAIDKPG---WRDEKRPFTFTSLPE-----DDVLEFVIKSY 68 (218)
T ss_pred ceEEEEEEEcCCC-----eEEEEEcCCCcCCCCCCCEEEEEeeCCC---CCccccccccccCCC-----CCeEEEEEEEc
Confidence 5789999999999 9999999988889999999999976432 123689999999984 47999999987
Q ss_pred eEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeE
Q 043022 166 VYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLA 245 (361)
Q Consensus 166 ~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i 245 (361)
+ ..|.+|.+|+++++|++|.++||+|+++. .+++|||||||||||+++|+++++..+. ..++
T Consensus 69 ~--------~~g~~s~~l~~l~~G~~v~i~gP~G~~~~-----~~~~vlia~GtGiaP~~s~l~~~~~~~~-----~~~v 130 (218)
T cd06196 69 P--------DHDGVTEQLGRLQPGDTLLIEDPWGAIEY-----KGPGVFIAGGAGITPFIAILRDLAAKGK-----LEGN 130 (218)
T ss_pred C--------CCCcHhHHHHhCCCCCEEEEECCccceEe-----cCceEEEecCCCcChHHHHHHHHHhCCC-----CceE
Confidence 5 13778999999999999999999998543 1579999999999999999999886432 2679
Q ss_pred EEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchH
Q 043022 246 WLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGME 325 (361)
Q Consensus 246 ~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~ 325 (361)
+|+|++|+.+|++|.+||++|. +++++++++++.... ...+++...+ .. +.+......+|+|||+.|+
T Consensus 131 ~l~~~~r~~~~~~~~~el~~l~-----~~~~~~~~s~~~~~~-~~~g~~~~~~---l~---~~~~~~~~~vyiCGp~~m~ 198 (218)
T cd06196 131 TLIFANKTEKDIILKDELEKML-----GLKFINVVTDEKDPG-YAHGRIDKAF---LK---QHVTDFNQHFYVCGPPPME 198 (218)
T ss_pred EEEEecCCHHHHhhHHHHHHhh-----cceEEEEEcCCCCCC-eeeeEECHHH---HH---HhcCCCCCEEEEECCHHHH
Confidence 9999999999999999999984 566777778754311 1234443211 11 2222235789999999999
Q ss_pred HHHHHHHHHHHHcc
Q 043022 326 KGIDDIMVSLAAND 339 (361)
Q Consensus 326 ~~v~~~L~~~g~~~ 339 (361)
+++.+.|.+.|...
T Consensus 199 ~~~~~~l~~~G~~~ 212 (218)
T cd06196 199 EAINGALKELGVPE 212 (218)
T ss_pred HHHHHHHHHcCCCH
Confidence 99999999988764
No 50
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=100.00 E-value=9.7e-35 Score=262.15 Aligned_cols=222 Identities=24% Similarity=0.387 Sum_probs=181.1
Q ss_pred EEEeEeeecCCCCCCceEEEEeeCCC---ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEE
Q 043022 88 RCLLNTKITGDDAPGETWHMVFSTEG---EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKR 164 (361)
Q Consensus 88 ~v~~~~~~~~~~~~~~~~~l~l~~~~---~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~ 164 (361)
+|++++.++++ ++.++|+.+. .+.|.||||+.|.++..+ ....|+|||+|.+. +.+.++|+|+.
T Consensus 2 ~v~~~~~~~~~-----~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~----~~~~R~ysi~s~~~----~~~~~~~~v~~ 68 (234)
T cd06183 2 KLVSKEDISHD-----TRIFRFELPSPDQVLGLPVGQHVELKAPDDG----EQVVRPYTPISPDD----DKGYFDLLIKI 68 (234)
T ss_pred EeEEeEecCCC-----EEEEEEECCCCCCcCCCCcccEEEEEecCCC----cccccccccccCCC----cCCEEEEEEEE
Confidence 57889999998 9999999875 367999999999987532 23589999999986 56789999998
Q ss_pred eeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCC-CcEEEEecCCchhhHHHHHHHHHhhcccccccCC
Q 043022 165 LVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPN-ATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNG 243 (361)
Q Consensus 165 ~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~-~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~ 243 (361)
++ +|.+|.||+++++|++|.|+||+|.+...+ ... +++|||||||||||+++++++++..... ..
T Consensus 69 ~~---------~G~~s~~l~~~~~G~~v~i~gP~G~~~~~~-~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~----~~ 134 (234)
T cd06183 69 YP---------GGKMSQYLHSLKPGDTVEIRGPFGKFEYKP-NGKVKHIGMIAGGTGITPMLQLIRAILKDPED----KT 134 (234)
T ss_pred CC---------CCcchhHHhcCCCCCEEEEECCccceeecC-CCCccEEEEEcCCcchhHHHHHHHHHHhCcCc----Cc
Confidence 76 799999999999999999999999865443 333 7899999999999999999998764311 36
Q ss_pred eEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcc
Q 043022 244 LAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRG 323 (361)
Q Consensus 244 ~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~ 323 (361)
+++|+|++|+.++++|.++|++|...++.+++++++++++++.|.+..+++++.+.+.. .......+..+|+|||++
T Consensus 135 ~i~l~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~---~~~~~~~~~~~~icGp~~ 211 (234)
T cd06183 135 KISLLYANRTEEDILLREELDELAKKHPDRFKVHYVLSRPPEGWKGGVGFITKEMIKEH---LPPPPSEDTLVLVCGPPP 211 (234)
T ss_pred EEEEEEecCCHHHhhhHHHHHHHHHhCcccEEEEEEEcCCCcCCccccceECHHHHHHh---CCCCCCCCeEEEEECCHH
Confidence 89999999999999999999999987655899999999877777777888876543211 110011467899999999
Q ss_pred hHH-HHHHHHHHHHHcc
Q 043022 324 MEK-GIDDIMVSLAAND 339 (361)
Q Consensus 324 m~~-~v~~~L~~~g~~~ 339 (361)
|++ ++++.|.+.|...
T Consensus 212 ~~~~~~~~~l~~~G~~~ 228 (234)
T cd06183 212 MIEGAVKGLLKELGYKK 228 (234)
T ss_pred HHHHHHHHHHHHcCCCH
Confidence 999 9999999887653
No 51
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=100.00 E-value=4e-35 Score=285.08 Aligned_cols=223 Identities=18% Similarity=0.297 Sum_probs=177.7
Q ss_pred CeeEEEEeEeeecCCCCCCceEEEEeeCCC---ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEE
Q 043022 84 PYIGRCLLNTKITGDDAPGETWHMVFSTEG---EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSL 160 (361)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~---~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~ 160 (361)
...++|++++.++++ ++.|+|+.+. .++|+||||+.|.++..+. ....+|+|||+|.| +++.++|
T Consensus 154 ~~~~~V~~~~~~t~~-----~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~--~~~~~R~ySias~p-----~~~~l~~ 221 (399)
T PRK13289 154 WRDFRVVKKVPESEV-----ITSFYLEPVDGGPVADFKPGQYLGVRLDPEGE--EYQEIRQYSLSDAP-----NGKYYRI 221 (399)
T ss_pred cEEEEEEEEEECCCC-----EEEEEEEcCCCCcCCCCCCCCeEEEEEecCCc--cccceeEEEeeeCC-----CCCeEEE
Confidence 456799999999999 9999999764 3679999999999753211 02235999999998 4569999
Q ss_pred EEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhccccc
Q 043022 161 CVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDY 239 (361)
Q Consensus 161 ~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~ 239 (361)
+||+.+ +|.+|+||++ +++||+|.|.||+|.+. ++....+++|||||||||||+++|+++++....
T Consensus 222 ~Vk~~~---------~G~~S~~L~~~l~~Gd~v~v~gP~G~f~-l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~--- 288 (399)
T PRK13289 222 SVKREA---------GGKVSNYLHDHVNVGDVLELAAPAGDFF-LDVASDTPVVLISGGVGITPMLSMLETLAAQQP--- 288 (399)
T ss_pred EEEECC---------CCeehHHHhhcCCCCCEEEEEcCccccc-cCCCCCCcEEEEecCccHHHHHHHHHHHHhcCC---
Confidence 999976 7999999997 99999999999999854 443456899999999999999999999875432
Q ss_pred ccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCccc-CCCC----eeEecchHHHhHHHHHHHhccCCe
Q 043022 240 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKN-EKGE----KMYIQTRMAEYANELWELLKKDNT 314 (361)
Q Consensus 240 ~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~-~~g~----~~~v~~~l~~~~~~~~~~l~~~~~ 314 (361)
.++++||||+|+.+|++|.+||++|.++++ +++++++++++... +.+. .+++...+ +...+...+.
T Consensus 289 --~~~v~l~~~~r~~~~~~~~~eL~~l~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~g~i~~~~------l~~~~~~~~~ 359 (399)
T PRK13289 289 --KRPVHFIHAARNGGVHAFRDEVEALAARHP-NLKAHTWYREPTEQDRAGEDFDSEGLMDLEW------LEAWLPDPDA 359 (399)
T ss_pred --CCCEEEEEEeCChhhchHHHHHHHHHHhCC-CcEEEEEECCCccccccCCcccccCcccHHH------HHhhCCCCCC
Confidence 368999999999999999999999999888 89999999876432 2222 23443211 2222322368
Q ss_pred EEEEECCcchHHHHHHHHHHHHHccC
Q 043022 315 YVYMCGLRGMEKGIDDIMVSLAANDG 340 (361)
Q Consensus 315 ~vyvCGp~~m~~~v~~~L~~~g~~~~ 340 (361)
.+|+|||+.|++++.+.|.+.|....
T Consensus 360 ~vyiCGp~~m~~~v~~~L~~~Gv~~~ 385 (399)
T PRK13289 360 DFYFCGPVPFMQFVAKQLLELGVPEE 385 (399)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCHH
Confidence 89999999999999999999887754
No 52
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=100.00 E-value=6.8e-35 Score=264.84 Aligned_cols=219 Identities=21% Similarity=0.362 Sum_probs=177.0
Q ss_pred CCCeeEEEEeEeeecCCCCCCceEEEEeeCCCc-cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEE
Q 043022 82 KTPYIGRCLLNTKITGDDAPGETWHMVFSTEGE-VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSL 160 (361)
Q Consensus 82 ~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~-l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~ 160 (361)
.+.+.++|++++.++++ +++++|+.+.. .+|+||||+.|.++..+ ....|+|||+|.|.. +.+.++|
T Consensus 15 ~~~~~~~v~~i~~~~~~-----~~~i~l~~~~~~~~~~pGQ~i~l~~~~~~----~~~~r~ysi~s~~~~---~~~~l~~ 82 (243)
T cd06216 15 ARELRARVVAVRPETAD-----MVTLTLRPNRGWPGHRAGQHVRLGVEIDG----VRHWRSYSLSSSPTQ---EDGTITL 82 (243)
T ss_pred cceeEEEEEEEEEcCCC-----cEEEEEecCCCCCCcCCCceEEEEEEECC----eEEEEEEeccCCCcC---CCCeEEE
Confidence 35678999999999999 99999998764 57999999999975322 225799999998841 2688999
Q ss_pred EEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhccccc
Q 043022 161 CVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDY 239 (361)
Q Consensus 161 ~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~ 239 (361)
+||.++ +|.+|.+|++ +++|++|.|.||+|. |.++.+..+++|||||||||||++++++++.....
T Consensus 83 ~ik~~~---------~G~~s~~l~~~~~~Gd~v~i~gP~G~-f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~~--- 149 (243)
T cd06216 83 TVKAQP---------DGLVSNWLVNHLAPGDVVELSQPQGD-FVLPDPLPPRLLLIAAGSGITPVMSMLRTLLARGP--- 149 (243)
T ss_pred EEEEcC---------CCcchhHHHhcCCCCCEEEEECCcee-eecCCCCCCCEEEEecCccHhHHHHHHHHHHhcCC---
Confidence 999976 7999999996 999999999999998 44554446899999999999999999999876531
Q ss_pred ccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEE
Q 043022 240 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMC 319 (361)
Q Consensus 240 ~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvC 319 (361)
.++++|+|++|+.++++|.++|++|.++++ ++++++.++++ +..+++.... .+++.... .+..+|+|
T Consensus 150 --~~~i~l~~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~s~~-----~~~g~~~~~~---l~~~~~~~--~~~~vyvc 216 (243)
T cd06216 150 --TADVVLLYYARTREDVIFADELRALAAQHP-NLRLHLLYTRE-----ELDGRLSAAH---LDAVVPDL--ADRQVYAC 216 (243)
T ss_pred --CCCEEEEEEcCChhhhHHHHHHHHHHHhCC-CeEEEEEEcCC-----ccCCCCCHHH---HHHhccCc--ccCeEEEE
Confidence 368999999999999999999999998877 89999888875 2344443321 11211111 35799999
Q ss_pred CCcchHHHHHHHHHHHHHc
Q 043022 320 GLRGMEKGIDDIMVSLAAN 338 (361)
Q Consensus 320 Gp~~m~~~v~~~L~~~g~~ 338 (361)
||++|++++.+.|++.|.+
T Consensus 217 Gp~~m~~~~~~~l~~~Gv~ 235 (243)
T cd06216 217 GPPGFLDAAEELLEAAGLA 235 (243)
T ss_pred CCHHHHHHHHHHHHHCCCc
Confidence 9999999999999998887
No 53
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=100.00 E-value=1.6e-34 Score=264.80 Aligned_cols=212 Identities=23% Similarity=0.314 Sum_probs=172.5
Q ss_pred CeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEE
Q 043022 84 PYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVK 163 (361)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~ 163 (361)
++.++|+++++++++ ++.|+|..+ ..|+||||+.|.+++. ..|+|||++.+ .+.++|+|+
T Consensus 7 ~~~~~v~~i~~~t~~-----~~~~~l~~~--~~~~pGQfi~l~~~~~-------~~~pySi~~~~------~~~~~~~Ik 66 (263)
T PRK08221 7 PAAYKILDITKHTDI-----EYTFRVEVD--GPVKPGQFFEVSLPKV-------GEAPISVSDYG------DGYIDLTIR 66 (263)
T ss_pred CccEEEEEEeccCCc-----EEEEEecCC--CCCCCCceEEEEeCCC-------CcceeeccCCC------CCEEEEEEE
Confidence 567999999999999 999999975 4799999999998753 24899999874 368999998
Q ss_pred EeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCC
Q 043022 164 RLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNG 243 (361)
Q Consensus 164 ~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~ 243 (361)
+ .|.+|++|+++++|+.|.|+||+|+.|.++....+++|||||||||||+++|+++++..... .+
T Consensus 67 ~-----------~G~~S~~L~~l~~Gd~v~v~gP~G~~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~~~----~~ 131 (263)
T PRK08221 67 R-----------VGKVTDEIFNLKEGDKLFLRGPYGNGFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENPQE----IK 131 (263)
T ss_pred e-----------CCchhhHHHhCCCCCEEEEECCCCCCcccCccCCccEEEEcccccHHHHHHHHHHHHhCccc----Cc
Confidence 7 48999999999999999999999986655544557999999999999999999988754321 25
Q ss_pred eEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcc
Q 043022 244 LAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRG 323 (361)
Q Consensus 244 ~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~ 323 (361)
+++|+|++|+.++++|.+||++|.+.+ + +++.+++....|.+..+++++.+.+.. .....+..+|+|||++
T Consensus 132 ~v~L~~g~r~~~~l~~~~el~~~~~~~--~--~~~~~~~~~~~~~~~~G~v~~~l~~~~-----~~~~~~~~vylCGp~~ 202 (263)
T PRK08221 132 SLDLILGFKNPDDILFKEDLKRWREKI--N--LILTLDEGEEGYRGNVGLVTKYIPELT-----LKDIDNMQVIVVGPPI 202 (263)
T ss_pred eEEEEEecCCHHHhhHHHHHHHHhhcC--c--EEEEecCCCCCCccCccccChhhHhcc-----CCCcCCeEEEEECCHH
Confidence 899999999999999999999998753 3 455567666667777788876554410 0111467899999999
Q ss_pred hHHHHHHHHHHHHHcc
Q 043022 324 MEKGIDDIMVSLAAND 339 (361)
Q Consensus 324 m~~~v~~~L~~~g~~~ 339 (361)
|++++.+.|.+.|.+.
T Consensus 203 mv~~~~~~L~~~Gv~~ 218 (263)
T PRK08221 203 MMKFTVLEFLKRGIKE 218 (263)
T ss_pred HHHHHHHHHHHcCCCH
Confidence 9999999999887764
No 54
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=3.5e-34 Score=258.97 Aligned_cols=228 Identities=25% Similarity=0.311 Sum_probs=194.4
Q ss_pred CCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC---ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcE
Q 043022 81 PKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG---EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKT 157 (361)
Q Consensus 81 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~---~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~ 157 (361)
|...+..++++.+.+++| +..++|.++. .+.+..|||+.+..+-.+ ....|+||+.|.+. +.+.
T Consensus 48 ~~~~~~~~l~~k~~~shd-----t~~f~f~lp~~~~~l~lp~g~hv~~~~~i~g----~~vvRpYTPvs~~~----~~g~ 114 (286)
T KOG0534|consen 48 PESYYPFRLIDKTELSHD-----TSLFRFVLPSADHVLGLPIGQHVVLKAPIGG----KLVVRPYTPVSLDD----DKGY 114 (286)
T ss_pred CcceEEEEEEEEEeccCC-----ceeEEEecCCchhccCcccceEEEEEecCCC----cEEEEecCCccCcc----ccce
Confidence 445788999999999999 8888888874 477999999999987543 33689999999986 5589
Q ss_pred EEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhccc
Q 043022 158 VSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHE 237 (361)
Q Consensus 158 l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~ 237 (361)
++|.||.++ +|.+|.||+.++.||.|.++||.|.+.+.+. ..+.+.|||||||||||++++++++....+
T Consensus 115 ~~l~VK~Y~---------~G~mS~~l~~LkiGd~ve~rGP~G~~~~~~~-~~~~l~miAgGtGItPmlqii~~il~~~~d 184 (286)
T KOG0534|consen 115 FDLVVKVYP---------KGKMSQHLDSLKIGDTVEFRGPIGEFKYDPQ-KAKHLGMIAGGTGITPMLQLIRAILKDPED 184 (286)
T ss_pred EEEEEEecc---------CCcccHHHhcCCCCCEEEEecCccceEecCC-CcceEEEEecccchhhHHHHHHHHhcCCCC
Confidence 999999998 8999999999999999999999999877764 478999999999999999999999876543
Q ss_pred ccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEE
Q 043022 238 DYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVY 317 (361)
Q Consensus 238 ~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vy 317 (361)
..+++|+|++++.+|+++++||++++.+++++|.++++++.++..|.+..+||...+... .+..... +...++
T Consensus 185 ----~tki~lly~N~te~DILlr~eL~~la~~~p~rf~~~y~v~~~~~~w~~~~g~It~~~i~~--~l~~~~~-~~~~~l 257 (286)
T KOG0534|consen 185 ----TTKISLLYANKTEDDILLREELEELASKYPERFKVWYVVDQPPEIWDGSVGFITKDLIKE--HLPPPKE-GETLVL 257 (286)
T ss_pred ----CcEEEEEEecCCccccchHHHHHHHHhhCcceEEEEEEEcCCcccccCccCccCHHHHHh--hCCCCCC-CCeEEE
Confidence 478999999999999999999999999999999999999999999999999998655431 1111121 258999
Q ss_pred EECCcchHH-HHHHHHHHHHHc
Q 043022 318 MCGLRGMEK-GIDDIMVSLAAN 338 (361)
Q Consensus 318 vCGp~~m~~-~v~~~L~~~g~~ 338 (361)
+|||++|++ ++...|.++|..
T Consensus 258 iCGPp~m~~~~~~~~le~Lg~~ 279 (286)
T KOG0534|consen 258 ICGPPPMINGAAQGNLEKLGYN 279 (286)
T ss_pred EECCHHHHhHHHHHHHHhcCCC
Confidence 999999998 577777777765
No 55
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=100.00 E-value=7e-34 Score=265.09 Aligned_cols=242 Identities=20% Similarity=0.261 Sum_probs=180.5
Q ss_pred cCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC---ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCc
Q 043022 80 KPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG---EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSK 156 (361)
Q Consensus 80 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~---~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~ 156 (361)
.+.....++|++++.++++ ++.++|+.+. .+.|+||||+.|.++..+.+......|+|||+|.|. +.+
T Consensus 29 ~~~~~~~~~v~~~~~~s~d-----~~~~~~~~~~~~~~~~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~----~~~ 99 (300)
T PTZ00319 29 DPDMFQHFKLIKKTEVTHD-----TFIFRFALHSPTQRLGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDD----EKG 99 (300)
T ss_pred CcCceEEEEEEEEEEcCCC-----ceEEEEECCCCcccCCCccceEEEEEEEeCCCCccceEEeeeccCCCcc----cCC
Confidence 3555677999999999999 9999998643 367999999999986422111112579999999986 678
Q ss_pred EEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCC--------------CCCCcEEEEecCCchh
Q 043022 157 TVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPR--------------DPNATVIMLATGTGIA 222 (361)
Q Consensus 157 ~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~--------------~~~~~iv~Ia~GtGia 222 (361)
.++|+||++........+.+|.+|+||+.+++||.|.|+||+|.+.+... ...++++|||||||||
T Consensus 100 ~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIa 179 (300)
T PTZ00319 100 YVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKLGDKIEMRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGIT 179 (300)
T ss_pred EEEEEEEEeccCCCCCCCCCCChhhhhhcCCCCCEEEEEccceeeEecCCcceeeccccccccccccceEEEEecCcccC
Confidence 99999998610000000126999999988999999999999998644321 1125899999999999
Q ss_pred hHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCC-cccCCCCeeEecchHHHh
Q 043022 223 PFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSRE-QKNEKGEKMYIQTRMAEY 301 (361)
Q Consensus 223 P~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~-~~~~~g~~~~v~~~l~~~ 301 (361)
||++|+++++..... ..++.|+||+|+.++++|.++|+++. ..+ ++++++.++++ ...|.+..++|...+.+.
T Consensus 180 P~~sml~~l~~~~~~----~~~i~liyg~r~~~dl~~~~eL~~~~-~~~-~~~~~~~~~~~~~~~~~~~~G~v~~~~l~~ 253 (300)
T PTZ00319 180 PMLQIIHAIKKNKED----RTKVFLVYANQTEDDILLRKELDEAA-KDP-RFHVWYTLDREATPEWKYGTGYVDEEMLRA 253 (300)
T ss_pred HHHHHHHHHHhCCCC----CceEEEEEecCCHHHhhHHHHHHHHh-hCC-CEEEEEEECCCCCCCcccccceeCHHHHHh
Confidence 999999998764321 25899999999999999999999954 455 89999999874 456777788888754432
Q ss_pred HHHHHHHhc-----cCCeEEEEECCcchHH-HHHHHHHHHHHcc
Q 043022 302 ANELWELLK-----KDNTYVYMCGLRGMEK-GIDDIMVSLAAND 339 (361)
Q Consensus 302 ~~~~~~~l~-----~~~~~vyvCGp~~m~~-~v~~~L~~~g~~~ 339 (361)
. ....+ .++..+|+|||++|++ ++.+.|+++|...
T Consensus 254 ~---~~~~~~~~~~~~~~~vyiCGp~~mv~~~~~~~L~~~G~~~ 294 (300)
T PTZ00319 254 H---LPVPDPQNSGIKKVMALMCGPPPMLQMAVKPNLEKIGYTA 294 (300)
T ss_pred h---cCCccccccccCCeEEEEECCHHHHHHHHHHHHHHcCCCH
Confidence 1 11111 1257899999999999 5788998887653
No 56
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=100.00 E-value=1.6e-33 Score=256.48 Aligned_cols=217 Identities=22% Similarity=0.303 Sum_probs=174.7
Q ss_pred CCeeEEEEeEeeecCCCCCCceEEEEeeCCCcc--ccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEE
Q 043022 83 TPYIGRCLLNTKITGDDAPGETWHMVFSTEGEV--PYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSL 160 (361)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l--~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~ 160 (361)
...+.+|.+++..+++ ++.|+|..+... +|+||||+.|.++..+. ...|.|||+|+|. ++..+.|
T Consensus 4 ~~~~~~V~~v~~~t~d-----i~sf~l~~~~g~~~~f~pGQ~i~v~l~~~~~----~~~R~YSl~s~p~----~~~~~~i 70 (266)
T COG1018 4 GFRRVTVTSVEPETDD-----VFSFTLEPPDGLRLDFEPGQYITVGLPNGGE----PLLRAYSLSSAPD----EDSLYRI 70 (266)
T ss_pred ceEEEEEEEEEEecCc-----eEEEEEEcCCCCccccCCCCeEEEEecCCCc----eeeEEEEeccCCC----CCceEEE
Confidence 4678999999999999 999999998866 59999999999876542 3699999999996 5579999
Q ss_pred EEEEeeEecCCCceecCccchhhh-cCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhccccc
Q 043022 161 CVKRLVYTNENGEIVKGVCSNFLC-DLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDY 239 (361)
Q Consensus 161 ~V~~~~~~~~~~~~~~G~~S~~L~-~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~ 239 (361)
.||+.+ +|.+|+||+ ++++||+|.|.+|.|.|.+. ..+..+++|||||+|||||+||++.+...+.
T Consensus 71 sVk~~~---------~G~~S~~Lh~~lk~Gd~l~v~~P~G~F~l~-~~~~~~~llla~G~GITP~lSml~~~~~~~~--- 137 (266)
T COG1018 71 SVKRED---------GGGGSNWLHDHLKVGDTLEVSAPAGDFVLD-DLPERKLLLLAGGIGITPFLSMLRTLLDRGP--- 137 (266)
T ss_pred EEEEeC---------CCcccHHHHhcCCCCCEEEEecCCCCccCC-CCCCCcEEEEeccccHhHHHHHHHHHHHhCC---
Confidence 999986 699999999 59999999999999986554 3455699999999999999999999876541
Q ss_pred ccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEE
Q 043022 240 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMC 319 (361)
Q Consensus 240 ~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvC 319 (361)
.++.|+|++|+.+++.|.+| +.+..++++...+....++.. ..+++.-. .+.......+..+|+|
T Consensus 138 ---~~v~l~h~~R~~~~~af~de-~~l~~~~~~~~~~~~~~~~~~-----~~g~~~~~------~l~~~~~~~~r~~y~C 202 (266)
T COG1018 138 ---ADVVLVHAARTPADLAFRDE-LELAAELPNALLLGLYTERGK-----LQGRIDVS------RLLSAAPDGGREVYLC 202 (266)
T ss_pred ---CCEEEEEecCChhhcchhhH-HHHHhhCCCCeeEEEEEecCC-----ccccccHH------HHhccCCCCCCEEEEE
Confidence 57999999999999999999 999999885566666554111 22222111 1111122123899999
Q ss_pred CCcchHHHHHHHHHHHHHccC
Q 043022 320 GLRGMEKGIDDIMVSLAANDG 340 (361)
Q Consensus 320 Gp~~m~~~v~~~L~~~g~~~~ 340 (361)
||.+|+++|+..|.++|.+..
T Consensus 203 Gp~~fm~av~~~l~~~g~~~~ 223 (266)
T COG1018 203 GPGPFMQAVRLALEALGVPDD 223 (266)
T ss_pred CCHHHHHHHHHHHHHcCCChh
Confidence 999999999999999998865
No 57
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=100.00 E-value=7.9e-34 Score=260.00 Aligned_cols=212 Identities=20% Similarity=0.286 Sum_probs=170.3
Q ss_pred CeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEE
Q 043022 84 PYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVK 163 (361)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~ 163 (361)
++.++|+++...+++ ++.+++..+ ++|+||||+.|.++.. ..|+|||++. +.+.++|+||
T Consensus 5 ~~~~~v~~~~~~t~~-----~~~~~~~~~--~~~~pGQ~v~l~~~~~-------~~~pySi~~~------~~~~l~~~Vk 64 (261)
T TIGR02911 5 PFKSEILEIIKHTDI-----EYTFRMSYD--GPVKPGQFFEVSLPKY-------GEAPISVSGI------GEGYIDLTIR 64 (261)
T ss_pred CceEEEEEEeeccCC-----EEEEEcCCC--CCCCCCcEEEEEecCC-------CccceecCCC------CCCeEEEEEE
Confidence 457999999999988 888888764 6799999999998753 2589999984 3478999999
Q ss_pred EeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCC
Q 043022 164 RLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNG 243 (361)
Q Consensus 164 ~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~ 243 (361)
+ .|.+|.+|+++++||+|.|+||+|+.|.++....++++||||||||||+++|+++++..... .+
T Consensus 65 ~-----------~G~~S~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~~----~~ 129 (261)
T TIGR02911 65 R-----------VGKVTDEVFTLKEGDNLFLRGPYGNGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNPKE----IK 129 (261)
T ss_pred e-----------CchhhHHHHcCCCCCEEEEecCCCCCcccCccCCceEEEEecccCcHHHHHHHHHHHhCccc----Cc
Confidence 7 48999999999999999999999996665544567999999999999999999988754321 25
Q ss_pred eEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcc
Q 043022 244 LAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRG 323 (361)
Q Consensus 244 ~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~ 323 (361)
+++|+|++|+.++++|.+||++|..+. ++ ++.++++.+.|.+..+++.+.+.+.. .. ...+..+|+|||++
T Consensus 130 ~v~L~~~~r~~~~~~~~~eL~~l~~~~--~~--~~~~~~~~~~~~~~~g~v~~~l~~~~---~~--~~~~~~v~lCGp~~ 200 (261)
T TIGR02911 130 SLNLILGFKTPDDILFKEDIAEWKGNI--NL--TLTLDEAEEDYKGNIGLVTKYIPELT---LK--DIEEVQAIVVGPPI 200 (261)
T ss_pred eEEEEEecCCHHHhhHHHHHHHHHhcC--cE--EEEEcCCCCCCcCCeeccCHhHHhcc---CC--CccceEEEEECCHH
Confidence 899999999999999999999998753 44 44455555566677778876554311 01 11367899999999
Q ss_pred hHHHHHHHHHHHHHcc
Q 043022 324 MEKGIDDIMVSLAAND 339 (361)
Q Consensus 324 m~~~v~~~L~~~g~~~ 339 (361)
|++++.+.|.+.|...
T Consensus 201 mv~~~~~~L~~~Gv~~ 216 (261)
T TIGR02911 201 MMKFTVQELLKKGIKE 216 (261)
T ss_pred HHHHHHHHHHHcCCCH
Confidence 9999999999987764
No 58
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=100.00 E-value=1.4e-33 Score=256.49 Aligned_cols=210 Identities=23% Similarity=0.355 Sum_probs=169.6
Q ss_pred EEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeE
Q 043022 89 CLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY 167 (361)
Q Consensus 89 v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~ 167 (361)
|++++.++++ +++|+|+.+. ...|+||||+.|.++..+ .+...|+|||+|.|. +.+.++|+|+..
T Consensus 1 V~~~~~~t~~-----v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~---~~~~~R~ySi~s~~~----~~~~l~l~v~~~-- 66 (246)
T cd06218 1 VLSNREIADD-----IYRLVLEAPEIAAAAKPGQFVMLRVPDGS---DPLLRRPISIHDVDP----EEGTITLLYKVV-- 66 (246)
T ss_pred CcceeEecCC-----eEEEEEeCcchhccCCCCcEEEEEeCCCC---CCcCCCceEeeeccC----CCCEEEEEEEEE--
Confidence 4678889998 9999999987 567999999999987522 144689999999885 468999999873
Q ss_pred ecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEE
Q 043022 168 TNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWL 247 (361)
Q Consensus 168 ~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L 247 (361)
|.+|++|+++++|++|.|.||+|+.|.++. ...++|||||||||||+++|++++.... ++++|
T Consensus 67 ---------G~~s~~l~~l~~Gd~v~i~gP~G~~~~~~~-~~~~~vlIagGtGIaP~~s~l~~~~~~~-------~~v~l 129 (246)
T cd06218 67 ---------GKGTRLLSELKAGDELDVLGPLGNGFDLPD-DDGKVLLVGGGIGIAPLLFLAKQLAERG-------IKVTV 129 (246)
T ss_pred ---------CcchHHHhcCCCCCEEEEEecCCCCcCCCC-CCCcEEEEecccCHHHHHHHHHHHHhcC-------CceEE
Confidence 778999999999999999999998777663 5689999999999999999999887522 68999
Q ss_pred EEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHH
Q 043022 248 FLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKG 327 (361)
Q Consensus 248 ~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~ 327 (361)
||++|+.+|++|.++|++|.. .+ .. .++ +.|.+.++++++.+.+.... . .+..||+|||+.|+++
T Consensus 130 ~~~~r~~~d~~~~~eL~~l~~----~~--~~-~~~--~~~~~~~g~v~~~l~~~~~~----~--~~~~vyiCGp~~mv~~ 194 (246)
T cd06218 130 LLGFRSADDLFLVEEFEALGA----EV--YV-ATD--DGSAGTKGFVTDLLKELLAE----A--RPDVVYACGPEPMLKA 194 (246)
T ss_pred EEEccchhhhhhHHHHHhhCC----cE--EE-EcC--CCCCCcceehHHHHHHHhhc----c--CCCEEEEECCHHHHHH
Confidence 999999999999999998842 22 22 222 23556778888877654322 1 3689999999999999
Q ss_pred HHHHHHHHHHccCCCHH
Q 043022 328 IDDIMVSLAANDGIDWL 344 (361)
Q Consensus 328 v~~~L~~~g~~~~~~~~ 344 (361)
+++.|++.|.+.....+
T Consensus 195 ~~~~L~~~Gv~~~~~~~ 211 (246)
T cd06218 195 VAELAAERGVPCQVSLE 211 (246)
T ss_pred HHHHHHhcCCCEEEEec
Confidence 99999998877543333
No 59
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=9.9e-33 Score=250.99 Aligned_cols=208 Identities=24% Similarity=0.379 Sum_probs=178.1
Q ss_pred eEEEEeEeeecCCCCCCceEEEEeeCCCc-cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEE
Q 043022 86 IGRCLLNTKITGDDAPGETWHMVFSTEGE-VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKR 164 (361)
Q Consensus 86 ~~~v~~~~~~~~~~~~~~~~~l~l~~~~~-l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~ 164 (361)
.++|.+++.++++ ++.++|+.+.. +.|+||||+.|.+++. ..|+||+++.+. +.+.++|+|+.
T Consensus 9 ~~~I~~~~~is~~-----~~~l~~~~~~~~~~~~pGQfv~l~~~~~-------~~~P~si~~~~~----~~g~~~l~i~~ 72 (252)
T COG0543 9 SYKVVEKEEISPD-----TFLLRLRLPFVALTFKPGQFVMLRVPGG-------VRRPYSLASAPD----DKGELELHIRV 72 (252)
T ss_pred ccEEEEEEEecCc-----eEEEEEeccccccccCCCcEEEEEeCCC-------cEEEeeeccCCC----cCCcEEEEEEE
Confidence 5899999999999 99999998765 6899999999999862 589999999997 57888999988
Q ss_pred eeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCe
Q 043022 165 LVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGL 244 (361)
Q Consensus 165 ~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~ 244 (361)
.+ .|.+|.+|+.+++||.|.+.||+|+.|..+. ..+++++||||||+||++++++++...+ . ..+
T Consensus 73 ~~---------~G~~T~~i~~~k~gd~i~v~GP~G~~~~~~~-~~~~vlliagGtG~aPl~~i~~~~~~~~-~----~~~ 137 (252)
T COG0543 73 YE---------VGKVTKYIFGLKEGDKIRVRGPLGNGFLREK-IGKPVLLIAGGTGIAPLYAIAKELKEKG-D----ANK 137 (252)
T ss_pred Ee---------CChHHHHHhhccCCCEEEEEcCCCCCccccc-cCCcEEEEecccCHhHHHHHHHHHHhcC-C----Cce
Confidence 87 8999999999999999999999999888763 4567999999999999999999998754 2 378
Q ss_pred EEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEe-cchHHHhHHHHHHHhccCCeEEEEECCcc
Q 043022 245 AWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYI-QTRMAEYANELWELLKKDNTYVYMCGLRG 323 (361)
Q Consensus 245 i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v-~~~l~~~~~~~~~~l~~~~~~vyvCGp~~ 323 (361)
++++||+|+..|+++.+||+++..+ +++++.+ ++|.|.+++| ++.+.+.... +...+|+|||+.
T Consensus 138 V~~~~G~~~~~dl~~~~el~~~~~~-----~~~~~~~---~~~~G~~G~v~~~~~~~~~~~-------~~~~v~~cGp~~ 202 (252)
T COG0543 138 VTLLYGARTAKDLLLLDELEELAEK-----EVHPVTD---DGWKGRKGFVTTDVLKELLDL-------EVDDVYICGPPA 202 (252)
T ss_pred EEEEEeccChhhcccHHHHHHhhcC-----cEEEEEC---CCCCccCcceeHHHHhhhccc-------cCCEEEEECCHH
Confidence 9999999999999999999999763 4445444 6788899999 6655543211 468999999999
Q ss_pred hHHHHHHHHHHHHHcc
Q 043022 324 MEKGIDDIMVSLAAND 339 (361)
Q Consensus 324 m~~~v~~~L~~~g~~~ 339 (361)
|++++.+.+.+.+...
T Consensus 203 M~~~v~~~~~~~g~~~ 218 (252)
T COG0543 203 MVKAVREKLKEYGVPI 218 (252)
T ss_pred HHHHHHHHHHhcCCch
Confidence 9999999999987654
No 60
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=100.00 E-value=8e-33 Score=246.81 Aligned_cols=198 Identities=21% Similarity=0.289 Sum_probs=156.6
Q ss_pred eEEEEeeCCCc-cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCceecCccchh
Q 043022 104 TWHMVFSTEGE-VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNF 182 (361)
Q Consensus 104 ~~~l~l~~~~~-l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~ 182 (361)
++.++|+.+.. +.|+||||+.|.++..+ ....|+|||+|.|. +.+.++|+||. .|.+|.+
T Consensus 9 ~~~i~l~~~~~~~~~~pGQ~v~l~~~~~~----~~~~r~ySi~s~~~----~~~~l~l~vk~-----------~G~~t~~ 69 (216)
T cd06198 9 TTTLTLEPRGPALGHRAGQFAFLRFDASG----WEEPHPFTISSAPD----PDGRLRFTIKA-----------LGDYTRR 69 (216)
T ss_pred eEEEEEeeCCCCCCcCCCCEEEEEeCCCC----CCCCCCcEEecCCC----CCCeEEEEEEe-----------CChHHHH
Confidence 88999988765 78999999999987532 23689999999986 55799999997 4789999
Q ss_pred hh-cCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHH
Q 043022 183 LC-DLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKE 261 (361)
Q Consensus 183 L~-~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~ 261 (361)
|+ ++++|+.|.|+||+|.+.+ +.. .++++||||||||||+++|++++..... .++++|+|++|+.++++|.+
T Consensus 70 l~~~l~~G~~v~i~gP~G~~~~-~~~-~~~~vlia~GtGiap~~~~l~~~~~~~~-----~~~v~l~~~~r~~~~~~~~~ 142 (216)
T cd06198 70 LAERLKPGTRVTVEGPYGRFTF-DDR-RARQIWIAGGIGITPFLALLEALAARGD-----ARPVTLFYCVRDPEDAVFLD 142 (216)
T ss_pred HHHhCCCCCEEEEECCCCCCcc-ccc-CceEEEEccccCHHHHHHHHHHHHhcCC-----CceEEEEEEECCHHHhhhHH
Confidence 99 6999999999999998544 333 6899999999999999999998876432 36899999999999999999
Q ss_pred HHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHccC
Q 043022 262 EFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDG 340 (361)
Q Consensus 262 el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~ 340 (361)
+|++|..++ ++++++..++. ..|.+...+ +. ... ....+..+|+|||+.|++++++.|.+.|....
T Consensus 143 ~l~~l~~~~--~~~~~~~~~~~-~~~~~~~~~----~~----~~~--~~~~~~~vyicGp~~m~~~v~~~l~~~Gv~~~ 208 (216)
T cd06198 143 ELRALAAAA--GVVLHVIDSPS-DGRLTLEQL----VR----ALV--PDLADADVWFCGPPGMADALEKGLRALGVPAR 208 (216)
T ss_pred HHHHHHHhc--CeEEEEEeCCC-Ccccchhhh----hh----hcC--CCcCCCeEEEECcHHHHHHHHHHHHHcCCChH
Confidence 999998875 78887765543 222211111 10 111 11146789999999999999999999887654
No 61
>PLN02252 nitrate reductase [NADPH]
Probab=100.00 E-value=9.1e-33 Score=287.01 Aligned_cols=239 Identities=19% Similarity=0.240 Sum_probs=188.5
Q ss_pred ccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCc---cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCC
Q 043022 79 FKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGE---VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDS 155 (361)
Q Consensus 79 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~---l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~ 155 (361)
..|.++..++|++++.++++ ++.|+|..+.. +.|.||||+.|.++..+ ....|+|||+|.+. +.
T Consensus 629 l~p~~~~~~~Lv~k~~lS~d-----~~~f~f~lp~~~~~lgl~pGQhV~l~~~~~g----~~~~R~YSpaS~~~----~~ 695 (888)
T PLN02252 629 LNPREKIPCRLVEKISLSHD-----VRLFRFALPSEDHVLGLPVGKHVFLCATING----KLCMRAYTPTSSDD----EV 695 (888)
T ss_pred cccCceEEEEEEEEEEccCC-----eEEEEEEECCCcccCCCCCCCEEEEEEecCC----eEEEeeeEecccCC----CC
Confidence 35677889999999999999 99999998753 57999999999975322 22579999999986 56
Q ss_pred cEEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcC-------CCC--CCCCcEEEEecCCchhhHHH
Q 043022 156 KTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEML-------MPR--DPNATVIMLATGTGIAPFRG 226 (361)
Q Consensus 156 ~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~-------~~~--~~~~~iv~Ia~GtGiaP~~~ 226 (361)
+.|+|+||++........+.+|.+|++|+++++|+.|.|+||+|.+.+ ++. ...++++||||||||||+++
T Consensus 696 g~lel~VK~~~~~~~~~~p~gG~~S~~L~~L~vGd~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~s 775 (888)
T PLN02252 696 GHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPIGDTIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQ 775 (888)
T ss_pred CEEEEEEEEEeccccCccCCCCchhhHHhcCCCCCEEEEecCccceeecccceeeeccccccCceEEEEecceehhHHHH
Confidence 899999998721000111236999999999999999999999998532 221 13479999999999999999
Q ss_pred HHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCc-ccCCCCeeEecchHHHhHHHH
Q 043022 227 FLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQ-KNEKGEKMYIQTRMAEYANEL 305 (361)
Q Consensus 227 ~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~-~~~~g~~~~v~~~l~~~~~~~ 305 (361)
||++++....+ ..++.|||++|+.+|++|.+||++|+++++.+|+++++++++. +.|.+.+++|.+.+.+. +
T Consensus 776 ilr~ll~~~~d----~t~i~Liyg~Rt~~Dil~~eEL~~la~~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~---~ 848 (888)
T PLN02252 776 VIQAILRDPED----KTEMSLVYANRTEDDILLREELDRWAAEHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLRE---H 848 (888)
T ss_pred HHHHHHhccCC----CCcEEEEEEECCHHHhhHHHHHHHHHHhCCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHH---h
Confidence 99998764322 3689999999999999999999999998866999999999864 67888888887754331 1
Q ss_pred HHHhccCCeEEEEECCcchHH-HHHHHHHHHHHc
Q 043022 306 WELLKKDNTYVYMCGLRGMEK-GIDDIMVSLAAN 338 (361)
Q Consensus 306 ~~~l~~~~~~vyvCGp~~m~~-~v~~~L~~~g~~ 338 (361)
..... ++..+|+|||++|++ ++...|+++|..
T Consensus 849 l~~~~-~~~~vyiCGPp~Mi~~av~~~L~~~G~~ 881 (888)
T PLN02252 849 LPEGG-DETLALMCGPPPMIEFACQPNLEKMGYD 881 (888)
T ss_pred cccCC-CCeEEEEeCCHHHHHHHHHHHHHHcCCC
Confidence 11111 367899999999999 588899888765
No 62
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=100.00 E-value=1.9e-32 Score=249.77 Aligned_cols=211 Identities=22% Similarity=0.339 Sum_probs=170.7
Q ss_pred CCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEE
Q 043022 83 TPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCV 162 (361)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V 162 (361)
++..++|++++.++++ ++.++|+.+..+.|+||||+.|.++..+ +...|+|||+|.| ++.++|+|
T Consensus 3 ~~~~~~V~~~~~~t~d-----~~~l~l~~~~~~~~~pGQ~v~l~~~~~~----~~~~r~ySi~s~~------~~~l~l~V 67 (250)
T PRK00054 3 KPENMKIVENKEIAPN-----IYTLVLDGEKVFDMKPGQFVMVWVPGVE----PLLERPISISDID------KNEITILY 67 (250)
T ss_pred CceEEEEEEEEEecCC-----eEEEEEeCccccCCCCCcEEEEEeCCCC----CcCceeeEEeeeC------CCEEEEEE
Confidence 3667999999999999 9999999876778999999999987542 3458999999986 36899999
Q ss_pred EEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccC
Q 043022 163 KRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFN 242 (361)
Q Consensus 163 ~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~ 242 (361)
+. .|.+|.+|+.+++|++|.|.||+|+.|.++. ..+++|||||||||||++++++++...+
T Consensus 68 k~-----------~G~~t~~l~~l~~G~~v~i~gP~G~~f~l~~-~~~~~vlIagG~GiaP~~s~l~~~~~~~------- 128 (250)
T PRK00054 68 RK-----------VGEGTKKLSKLKEGDELDIRGPLGNGFDLEE-IGGKVLLVGGGIGVAPLYELAKELKKKG------- 128 (250)
T ss_pred EE-----------cChHHHHHhcCCCCCEEEEEcccCCCCCCCC-CCCeEEEEeccccHHHHHHHHHHHHHcC-------
Confidence 97 4889999999999999999999998776653 5579999999999999999999887543
Q ss_pred CeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCc
Q 043022 243 GLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLR 322 (361)
Q Consensus 243 ~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~ 322 (361)
.+++|+|++|+.+|++|.++|+++. .+. +. + ++.|.+.++++++.+.+.. . +...||+|||+
T Consensus 129 ~~v~l~~~~r~~~d~~~~~el~~~~-----~~~--~~-~--~~~~~~~~g~v~~~l~~~~-------~-~~~~vyvCGp~ 190 (250)
T PRK00054 129 VEVTTVLGARTKDEVIFEEEFAKVG-----DVY--VT-T--DDGSYGFKGFVTDVLDELD-------S-EYDAIYSCGPE 190 (250)
T ss_pred CcEEEEEEcCCHHHhhhHHHHHhcC-----CEE--EE-e--cCCCCCcccchhHhHhhhc-------c-CCCEEEEeCCH
Confidence 4789999999999999999999842 221 11 2 2345567788887665421 1 35689999999
Q ss_pred chHHHHHHHHHHHHHccCCCHHH
Q 043022 323 GMEKGIDDIMVSLAANDGIDWLD 345 (361)
Q Consensus 323 ~m~~~v~~~L~~~g~~~~~~~~~ 345 (361)
.|++++.+.|.+.|.+..+..|+
T Consensus 191 ~m~~~v~~~l~~~Gv~~~~~~e~ 213 (250)
T PRK00054 191 IMMKKVVEILKEKKVPAYVSLER 213 (250)
T ss_pred HHHHHHHHHHHHcCCcEEEEEcc
Confidence 99999999999988754444443
No 63
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=100.00 E-value=3.5e-32 Score=251.74 Aligned_cols=203 Identities=18% Similarity=0.236 Sum_probs=164.0
Q ss_pred EEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEe
Q 043022 87 GRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRL 165 (361)
Q Consensus 87 ~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~ 165 (361)
++|+++++++++ ++.++|..+. ...|+||||+.|.++... ..|+|||+|.+. +.+.++|+|++
T Consensus 2 ~~I~~~~~~t~~-----~~~l~l~~~~~~~~~~pGQfv~l~~~~~~------~~rpySias~~~----~~~~i~l~vk~- 65 (281)
T PRK06222 2 YKILEKEELAPN-----VFLMEIEAPRVAKKAKPGQFVIVRIDEKG------ERIPLTIADYDR----EKGTITIVFQA- 65 (281)
T ss_pred cEEEEEEEecCC-----EEEEEEeCchhhccCCCCeEEEEEeCCCC------CceeeEeeEEcC----CCCEEEEEEEe-
Confidence 578999999999 9999999876 356999999999986321 368999999875 56899999997
Q ss_pred eEecCCCceecCccchhhhcCCCCCEE-EEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCe
Q 043022 166 VYTNENGEIVKGVCSNFLCDLKPGAEV-KITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGL 244 (361)
Q Consensus 166 ~~~~~~~~~~~G~~S~~L~~l~~G~~v-~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~ 244 (361)
.|.+|.+|+++++|++| .|.||+|++|..+ ..++++|||||+||||++++++++...+ .+
T Consensus 66 ----------~G~~T~~L~~l~~Gd~v~~i~GP~G~~~~~~--~~~~~llIaGGiGiaPl~~l~~~l~~~~-------~~ 126 (281)
T PRK06222 66 ----------VGKSTRKLAELKEGDSILDVVGPLGKPSEIE--KFGTVVCVGGGVGIAPVYPIAKALKEAG-------NK 126 (281)
T ss_pred ----------CCcHHHHHhcCCCCCEEeeEEcCCCCCcccC--CCCeEEEEeCcCcHHHHHHHHHHHHHCC-------Ce
Confidence 48999999999999999 6999999987653 3479999999999999999999876533 47
Q ss_pred EEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcch
Q 043022 245 AWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGM 324 (361)
Q Consensus 245 i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m 324 (361)
++|+|++|+.+|++|.+||+++..+ + ++ .+ ++.|.|.+++|.+.+.+... ... ....||+|||+.|
T Consensus 127 v~l~~g~r~~~d~~~~~el~~~~~~----~--~v-~~--~d~~~g~~G~v~~~l~~~~~----~~~-~~~~vy~CGP~~M 192 (281)
T PRK06222 127 VITIIGARNKDLLILEDEMKAVSDE----L--YV-TT--DDGSYGRKGFVTDVLKELLE----SGK-KVDRVVAIGPVIM 192 (281)
T ss_pred EEEEEecCCHHHhhcHHHHHhhCCe----E--EE-Ec--CCCCcCcccchHHHHHHHhh----cCC-CCcEEEEECCHHH
Confidence 9999999999999999999987542 2 22 22 23566778888776654321 111 1457999999999
Q ss_pred HHHHHHHHHHHHHc
Q 043022 325 EKGIDDIMVSLAAN 338 (361)
Q Consensus 325 ~~~v~~~L~~~g~~ 338 (361)
++++.+.+.+.|..
T Consensus 193 ~~~v~~~l~~~gv~ 206 (281)
T PRK06222 193 MKFVAELTKPYGIK 206 (281)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999888764
No 64
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=100.00 E-value=3.4e-32 Score=247.67 Aligned_cols=203 Identities=19% Similarity=0.246 Sum_probs=162.9
Q ss_pred EEEeEeeecCCCCCCceEEEEeeCCCc-cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEee
Q 043022 88 RCLLNTKITGDDAPGETWHMVFSTEGE-VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLV 166 (361)
Q Consensus 88 ~v~~~~~~~~~~~~~~~~~l~l~~~~~-l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~ 166 (361)
+|+++++++++ ++.++|+.+.. ..|+||||+.|.++... ..|+|||+|.|. +.+.++|+|+.
T Consensus 2 ~v~~~~~~t~d-----~~~~~l~~~~~~~~~~pGQf~~l~~~~~~------~~~pySi~s~~~----~~~~~~~~vk~-- 64 (248)
T cd06219 2 KILEKEELAPN-----VKLFEIEAPLIAKKAKPGQFVIVRADEKG------ERIPLTIADWDP----EKGTITIVVQV-- 64 (248)
T ss_pred EEEEEEEeCCC-----eEEEEEEChhhhccCCCCcEEEEEcCCCC------CccceEeEEEcC----CCCEEEEEEEe--
Confidence 68899999999 99999998763 57999999999975321 468999999875 56899999987
Q ss_pred EecCCCceecCccchhhhcCCCCCEE-EEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeE
Q 043022 167 YTNENGEIVKGVCSNFLCDLKPGAEV-KITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLA 245 (361)
Q Consensus 167 ~~~~~~~~~~G~~S~~L~~l~~G~~v-~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i 245 (361)
.|..|.+|.++++|++| .++||+|.++..+ ..+++|||||||||||+++|++++...+ .++
T Consensus 65 ---------~G~~t~~l~~l~~G~~v~~i~gP~G~~~~~~--~~~~~lliagG~GiaP~~~~l~~~~~~~-------~~v 126 (248)
T cd06219 65 ---------VGKSTRELATLEEGDKIHDVVGPLGKPSEIE--NYGTVVFVGGGVGIAPIYPIAKALKEAG-------NRV 126 (248)
T ss_pred ---------CCchHHHHHhcCCCCEeeeeecCCCCCeecC--CCCeEEEEeCcccHHHHHHHHHHHHHcC-------CeE
Confidence 48899999889999999 6999999977653 3579999999999999999999877532 579
Q ss_pred EEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchH
Q 043022 246 WLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGME 325 (361)
Q Consensus 246 ~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~ 325 (361)
+|+|++|+.++++|.+||++|.++ . .+. ++ +.|.+..+++.+.+.+... ... ....+|+|||+.|+
T Consensus 127 ~l~~~~r~~~~~~~~~el~~l~~~----~--~~~-~~--~~~~~~~g~v~~~l~~~~~----~~~-~~~~vyiCGP~~m~ 192 (248)
T cd06219 127 ITIIGARTKDLVILEDEFRAVSDE----L--IIT-TD--DGSYGEKGFVTDPLKELIE----SGE-KVDLVIAIGPPIMM 192 (248)
T ss_pred EEEEEcCCHHHhhhHHHHHhhcCe----E--EEE-eC--CCCCCccccchHHHHHHHh----ccC-CccEEEEECCHHHH
Confidence 999999999999999999999642 2 222 32 3455677788776654331 111 34579999999999
Q ss_pred HHHHHHHHHHHHcc
Q 043022 326 KGIDDIMVSLAAND 339 (361)
Q Consensus 326 ~~v~~~L~~~g~~~ 339 (361)
+++.+.|.+.|...
T Consensus 193 ~~~~~~l~~~Gv~~ 206 (248)
T cd06219 193 KAVSELTRPYGIPT 206 (248)
T ss_pred HHHHHHHHHcCCCE
Confidence 99999998877653
No 65
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=100.00 E-value=6.4e-32 Score=240.07 Aligned_cols=197 Identities=18% Similarity=0.260 Sum_probs=155.6
Q ss_pred eEeeecCCCCCCceEEEEeeCCCc---cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeE
Q 043022 91 LNTKITGDDAPGETWHMVFSTEGE---VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY 167 (361)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~l~~~~~---l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~ 167 (361)
+++.++++ +++++|+.+.. ..|+||||+.|.++.. ..|+|||+|.|. +.+.++|+|+.++
T Consensus 2 ~~~~~~~~-----~~~~~l~~~~~~~~~~~~pGQ~~~l~~~~~-------~~r~ySi~s~~~----~~~~l~~~v~~~~- 64 (211)
T cd06185 2 RIRDEAPD-----IRSFELEAPDGAPLPAFEPGAHIDVHLPNG-------LVRQYSLCGDPA----DRDRYRIAVLREP- 64 (211)
T ss_pred ceEEcCCC-----eEEEEEEeCCCCcCCCCCCCceEEEEcCCC-------CceeeeccCCCC----CCCEEEEEEEecc-
Confidence 56788888 99999999875 3799999999998641 579999999986 4689999999875
Q ss_pred ecCCCceecCc-cchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeE
Q 043022 168 TNENGEIVKGV-CSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLA 245 (361)
Q Consensus 168 ~~~~~~~~~G~-~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i 245 (361)
.|. +|.||++ +++|++|.|+||+|.+...+ ..+++||||+||||||++++++++.... .++
T Consensus 65 --------~g~~~s~~l~~~~~~Gd~v~i~gP~g~f~~~~--~~~~~v~ia~GtGiap~~~il~~~~~~~-------~~v 127 (211)
T cd06185 65 --------ASRGGSRYMHELLRVGDELEVSAPRNLFPLDE--AARRHLLIAGGIGITPILSMARALAARG-------ADF 127 (211)
T ss_pred --------CCCchHHHHHhcCCCCCEEEEcCCccCCcCCC--CCCcEEEEeccchHhHHHHHHHHHHhCC-------CCE
Confidence 444 8999986 89999999999999765433 3579999999999999999999887532 579
Q ss_pred EEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchH
Q 043022 246 WLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGME 325 (361)
Q Consensus 246 ~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~ 325 (361)
+|+|++|+.++++|.++|+++. .. ++++.+ +++. .+..+.+ +...+. .+..+|+|||+.|+
T Consensus 128 ~l~~~~r~~~~~~~~~~l~~~~--~~-~~~~~~--~~~~-----~~~~~~~--------~~~~~~-~~~~vyicGp~~m~ 188 (211)
T cd06185 128 ELHYAGRSREDAAFLDELAALP--GD-RVHLHF--DDEG-----GRLDLAA--------LLAAPP-AGTHVYVCGPEGMM 188 (211)
T ss_pred EEEEEeCCCcchhHHHHHhhhc--CC-cEEEEE--CCCC-----CccCHHH--------HhccCC-CCCEEEEECCHHHH
Confidence 9999999999999999999987 23 666553 4321 1122222 222222 36799999999999
Q ss_pred HHHHHHHHHHHHccC
Q 043022 326 KGIDDIMVSLAANDG 340 (361)
Q Consensus 326 ~~v~~~L~~~g~~~~ 340 (361)
+++.+.|.+.|...+
T Consensus 189 ~~~~~~l~~~gv~~~ 203 (211)
T cd06185 189 DAVRAAAAALGWPEA 203 (211)
T ss_pred HHHHHHHHHcCCChh
Confidence 999999999888754
No 66
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=100.00 E-value=2.4e-31 Score=241.56 Aligned_cols=200 Identities=18% Similarity=0.236 Sum_probs=159.3
Q ss_pred EEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeE
Q 043022 89 CLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY 167 (361)
Q Consensus 89 v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~ 167 (361)
|++++.++++ +++|+|+.+. ...|+||||+.|.++... ....|+|||+|.+. +.+.++|+|+.
T Consensus 1 i~~~~~~t~~-----~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~----~~~~rpySi~s~~~----~~~~l~l~i~~--- 64 (243)
T cd06192 1 IVKKEQLEPN-----LVLLTIKAPLAARLFRPGQFVFLRNFESP----GLERIPLSLAGVDP----EEGTISLLVEI--- 64 (243)
T ss_pred CceEEEecCC-----EEEEEEEccchhhcCCCCCeEEEecCCCC----CceeeeeEeeecCC----CCCEEEEEEEE---
Confidence 4678889998 9999999876 467999999999986421 23589999999986 56899999986
Q ss_pred ecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEE
Q 043022 168 TNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWL 247 (361)
Q Consensus 168 ~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L 247 (361)
.|.+|.||+++++|++|.|.||+|+++..+ +..++++||||||||||+++|++++...+ .+++|
T Consensus 65 --------~G~~t~~l~~~~~G~~l~i~gP~G~~~~~~-~~~~~~lliagGtGiap~~~~l~~~~~~~-------~~v~l 128 (243)
T cd06192 65 --------RGPKTKLIAELKPGEKLDVMGPLGNGFEGP-KKGGTVLLVAGGIGLAPLLPIAKKLAANG-------NKVTV 128 (243)
T ss_pred --------cCchHHHHHhCCCCCEEEEEccCCCCCccC-CCCCEEEEEeCcccHHHHHHHHHHHHHCC-------CeEEE
Confidence 488999999999999999999999877654 34579999999999999999999987542 58999
Q ss_pred EEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHH
Q 043022 248 FLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKG 327 (361)
Q Consensus 248 ~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~ 327 (361)
+|++|+.+|+++.+||+++. .+.+ .+++ +.|.+..+++++.... .. .. +...+|+|||+.|+++
T Consensus 129 ~~~~r~~~d~~~~~el~~~~-----~~~~--~~~~--~~~~~~~g~v~~~~~~-----~~-~~-~~~~v~icGp~~mv~~ 192 (243)
T cd06192 129 LAGAKKAKEEFLDEYFELPA-----DVEI--WTTD--DGELGLEGKVTDSDKP-----IP-LE-DVDRIIVAGSDIMMKA 192 (243)
T ss_pred EEecCcHHHHHHHHHHHhhc-----CeEE--EEec--CCCCccceeechhhhh-----hh-cc-cCCEEEEECCHHHHHH
Confidence 99999999999999998772 2222 2232 3455666777654111 11 11 3568999999999999
Q ss_pred HHHHHHHHH
Q 043022 328 IDDIMVSLA 336 (361)
Q Consensus 328 v~~~L~~~g 336 (361)
+++.|++.|
T Consensus 193 ~~~~l~~~g 201 (243)
T cd06192 193 VVEALDEWL 201 (243)
T ss_pred HHHHHHhhc
Confidence 999999986
No 67
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.98 E-value=1.4e-31 Score=241.56 Aligned_cols=200 Identities=23% Similarity=0.317 Sum_probs=162.2
Q ss_pred EEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeE
Q 043022 88 RCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY 167 (361)
Q Consensus 88 ~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~ 167 (361)
+|++++.++++ +++++|+.+ .+|+||||+.|.+++. ..|+|||+|.| +.++|+|++
T Consensus 2 ~v~~~~~~t~~-----~~~~~l~~~--~~~~pGQ~v~l~~~~~-------~~~~~Si~s~~-------~~l~~~v~~--- 57 (233)
T cd06220 2 TIKEVIDETPT-----VKTFVFDWD--FDFKPGQFVMVWVPGV-------DEIPMSLSYID-------GPNSITVKK--- 57 (233)
T ss_pred EEEEEEEEcCC-----EEEEEEecC--CCCCCCceEEEEeCCC-------CcceeEEecCC-------CeEEEEEEe---
Confidence 68899999999 999999874 4899999999998643 25899999985 589999987
Q ss_pred ecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEE
Q 043022 168 TNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWL 247 (361)
Q Consensus 168 ~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L 247 (361)
.|.+|+||+++++||.|.|.||+|+.|.++ .+++|||||||||||+++++++++.. ++++|
T Consensus 58 --------~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~---~~~~vliAgGtGitP~~sil~~~~~~--------~~i~l 118 (233)
T cd06220 58 --------VGEATSALHDLKEGDKLGIRGPYGNGFELV---GGKVLLIGGGIGIAPLAPLAERLKKA--------ADVTV 118 (233)
T ss_pred --------cChHHHHHHhcCCCCEEEEECcCCCCccCC---CCeEEEEecCcChHHHHHHHHHHHhc--------CCEEE
Confidence 489999999999999999999999866553 57999999999999999999988743 47999
Q ss_pred EEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHH
Q 043022 248 FLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKG 327 (361)
Q Consensus 248 ~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~ 327 (361)
+|++|+.+|++|.+||+++ . .+.+ ... +.|.+..+++++.+.+.. .. ....+|+|||++|+++
T Consensus 119 ~~~~r~~~d~~~~~eL~~~----~-~~~~--~~~---~~~~~~~g~~~~~l~~~~------~~-~~~~vyicGp~~m~~~ 181 (233)
T cd06220 119 LLGARTKEELLFLDRLRKS----D-ELIV--TTD---DGSYGFKGFVTDLLKELD------LE-EYDAIYVCGPEIMMYK 181 (233)
T ss_pred EEecCChHHChhHHHHhhC----C-cEEE--EEe---CCCCcccceehHHHhhhc------cc-CCCEEEEECCHHHHHH
Confidence 9999999999999999872 2 3332 221 245556778877655422 12 3568999999999999
Q ss_pred HHHHHHHHHHccCCCHHHHH
Q 043022 328 IDDIMVSLAANDGIDWLDYK 347 (361)
Q Consensus 328 v~~~L~~~g~~~~~~~~~~~ 347 (361)
+.+.|.+.|....+..|.|+
T Consensus 182 ~~~~L~~~g~~~~i~~e~f~ 201 (233)
T cd06220 182 VLEILDERGVRAQFSLERYM 201 (233)
T ss_pred HHHHHHhcCCcEEEEecccc
Confidence 99999998886556666654
No 68
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.98 E-value=6.7e-32 Score=237.12 Aligned_cols=266 Identities=23% Similarity=0.375 Sum_probs=210.1
Q ss_pred cceeEEEeeecccCccchhhhcccccccccccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC--ccccCCCcE
Q 043022 45 GGRVVSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG--EVPYKEGQS 122 (361)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~--~l~~~pGQ~ 122 (361)
-+++.++.||..-..+...|. + + .+--.....++|+++.....- +..+.+..|. .++|+||-|
T Consensus 105 a~eG~RLsCQ~~Vk~dm~lev---p--E-----e~fgvkkWectViSNdN~ATF-----IKEL~laip~g~~vpFraGGy 169 (410)
T COG2871 105 AKEGWRLSCQVNVKHDMDLEV---P--E-----EVFGVKKWECTVISNDNKATF-----IKELKLAIPEGEEVPFRAGGY 169 (410)
T ss_pred hhccceEEEEecccccceeec---h--H-----HhcCccceeEEEEeCCchhhh-----hhhheeeCCCCCccccCCCce
Confidence 456888999887666655532 1 1 112234678999999988877 7788887765 689999999
Q ss_pred EEEecCCCC--------------------------CCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecC-CCcee
Q 043022 123 IGVIADGVD--------------------------KNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNE-NGEIV 175 (361)
Q Consensus 123 v~l~~~~~~--------------------------~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~-~~~~~ 175 (361)
+++..|.-. ...++ ..|.||+||-|. +-+.|-|-||..- +++ ....+
T Consensus 170 iQie~pph~v~y~Dfdi~~eY~~DWdkf~lf~~vs~v~e~-~~rAYSmAsYPe----E~giI~~NvRIAt-PPp~~~~~P 243 (410)
T COG2871 170 IQIEAPPHTVNYKDFDIPPEYHEDWDKFNLFRYVSKVDEP-IIRAYSMASYPE----EKGIIKLNVRIAT-PPPRNPDAP 243 (410)
T ss_pred EEEecCCccccccccCCChhHhcchhhhchheeeccccHH-HHHHhhhhcChh----hcCeEEEEEEecc-CCCCCCCCC
Confidence 999976321 00122 469999999998 7889999998753 222 23567
Q ss_pred cCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCc
Q 043022 176 KGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSS 255 (361)
Q Consensus 176 ~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~ 255 (361)
.|.+|.|+..|++||+|.|+||+|.+|.. +.++++|||+||.|.||+++-|-+.+.+.+. .+++.+.||+|+..
T Consensus 244 pG~mSSyi~sLKpGDKvtisGPfGEfFaK--dtdaemvFigGGAGmapmRSHIfDqL~rlhS----kRkis~WYGARS~r 317 (410)
T COG2871 244 PGQMSSYIWSLKPGDKVTISGPFGEFFAK--DTDAEMVFIGGGAGMAPMRSHIFDQLKRLHS----KRKISFWYGARSLR 317 (410)
T ss_pred ccceeeeEEeecCCCeEEEeccchhhhhc--cCCCceEEEecCcCcCchHHHHHHHHHhhcc----cceeeeeeccchHH
Confidence 89999999999999999999999998765 5668999999999999999988554443332 38999999999999
Q ss_pred ccccHHHHHHHHHhCCCceEEEEEecCC--cccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHH
Q 043022 256 SLLYKEEFEKMKEKAPENFRLDFAVSRE--QKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMV 333 (361)
Q Consensus 256 d~~~~~el~~l~~~~~~~~~~~~~~s~~--~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~ 333 (361)
+.+|.+++++|+++.+ ||++|+++|++ +++|.+..++++..+-+. .+.+.-.++++.+|+||||-|..+|.+.|.
T Consensus 318 E~fY~Ed~d~L~ae~p-NF~wH~aLSdplpEDnW~g~TgFihnv~~en--~Lk~h~aPEDceyYmCGPp~mNasvikmL~ 394 (410)
T COG2871 318 EMFYQEDFDQLQAENP-NFHWHLALSDPLPEDNWDGYTGFIHNVLYEN--YLKDHEAPEDCEYYMCGPPLMNASVIKMLK 394 (410)
T ss_pred HhHHHHHHHHHHhhCC-CcEEEEEecCCCCcCCcccchhHHHHHHHhh--hhhcCCCchheeEEeeCcchhhHHHHHHHH
Confidence 9999999999999999 99999999987 568999888888877552 232333346899999999999999999999
Q ss_pred HHHHccC
Q 043022 334 SLAANDG 340 (361)
Q Consensus 334 ~~g~~~~ 340 (361)
++|+++.
T Consensus 395 dlGVE~e 401 (410)
T COG2871 395 DLGVERE 401 (410)
T ss_pred hcCcccc
Confidence 9998865
No 69
>PRK05802 hypothetical protein; Provisional
Probab=99.98 E-value=5.3e-31 Score=247.08 Aligned_cols=209 Identities=13% Similarity=0.130 Sum_probs=159.9
Q ss_pred CCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCc---cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcE
Q 043022 81 PKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGE---VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKT 157 (361)
Q Consensus 81 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~---l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~ 157 (361)
+.+.+.++|++++.++++ ++.++|+.|.. ..++||||++|.++..+ +...|+|||++.+. +.+.
T Consensus 61 ~~~~~~~~I~~~~~~t~d-----v~~l~l~~p~~~~~~~~~PGQFv~l~~~~~~----~~~~rP~SI~~~~~----~~g~ 127 (320)
T PRK05802 61 GRKTYECKIIKKENIEDN-----LIILTLKVPHKLARDLVYPGSFVFLRNKNSS----SFFDVPISIMEADT----EENI 127 (320)
T ss_pred ccccEeEEEEEEEEecCC-----EEEEEEECCchhhhccCCCCceEEEEEcCCC----CEeEEeeEecccCC----CCCE
Confidence 456789999999999999 99999998764 34799999999986422 33579999999986 5789
Q ss_pred EEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCC-cCCC---CCCCCcEEEEecCCchhhHHHHHHHHHh
Q 043022 158 VSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKE-MLMP---RDPNATVIMLATGTGIAPFRGFLWKMFF 233 (361)
Q Consensus 158 l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~-~~~~---~~~~~~iv~Ia~GtGiaP~~~~l~~~~~ 233 (361)
++|+|++ .|.+|++|+++++|++|.|.||+|+. |.++ ....+++|+||||+||||+++++++++.
T Consensus 128 l~l~ik~-----------~G~~T~~L~~l~~Gd~l~v~GP~GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~ 196 (320)
T PRK05802 128 IKVAIEI-----------RGVKTKKIAKLNKGDEILLRGPYWNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYS 196 (320)
T ss_pred EEEEEEe-----------cChhHHHHhcCCCCCEEEEeCCCCcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHH
Confidence 9999998 49999999999999999999999764 3332 2334689999999999999999999875
Q ss_pred hcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCC
Q 043022 234 EKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDN 313 (361)
Q Consensus 234 ~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~ 313 (361)
.+ .+++|+||+|+.++++|.++|+++..+. .+...+......+ +.++++.+.+.+ . +.
T Consensus 197 ~~-------~~v~li~g~r~~~~~~~~~el~~~~~~~----~~~~~~ddG~~~~-~~~g~v~~~l~~--------~--~~ 254 (320)
T PRK05802 197 NG-------NKIIVIIDKGPFKNNFIKEYLELYNIEI----IELNLLDDGELSE-EGKDILKEIIKK--------E--DI 254 (320)
T ss_pred cC-------CcEEEEEeCCCHHHHHHHHHHHHhhCce----EEEEecccCCCCc-cccchHHHHhcC--------C--CC
Confidence 43 4799999999999999999999986532 2221122111111 122233332221 1 24
Q ss_pred eEEEEECCcchHHHHHHHHHHH
Q 043022 314 TYVYMCGLRGMEKGIDDIMVSL 335 (361)
Q Consensus 314 ~~vyvCGp~~m~~~v~~~L~~~ 335 (361)
..||+|||+.|++++.+.|.++
T Consensus 255 ~~vy~CGP~~M~k~v~~~l~~~ 276 (320)
T PRK05802 255 NLIHCGGSDILHYKIIEYLDKL 276 (320)
T ss_pred CEEEEECCHHHHHHHHHHHhhh
Confidence 6799999999999999999874
No 70
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.97 E-value=9.8e-31 Score=233.74 Aligned_cols=189 Identities=19% Similarity=0.280 Sum_probs=142.0
Q ss_pred eEeeecCCCCCCceEEEEeeCCCc---cccCCCcEEEEecCCCCCCC-------C-----CCCceecccccCCCCCCCCC
Q 043022 91 LNTKITGDDAPGETWHMVFSTEGE---VPYKEGQSIGVIADGVDKNA-------K-----PHKLRLYSIASSALGDFGDS 155 (361)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~l~~~~~---l~~~pGQ~v~l~~~~~~~~~-------~-----~~~~R~ySias~p~~~~~~~ 155 (361)
.++.++++ +.+|+|..+.. +.|+|||||.|.++.....+ . ....|+|||+|.|..+. ..
T Consensus 2 ~~~~~s~~-----v~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~-~~ 75 (220)
T cd06197 2 KSEVITPT-----LTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDP-AT 75 (220)
T ss_pred cceecccc-----eeEEEEEecCCccccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCC-CC
Confidence 34567777 99999998776 88999999999986521100 0 12469999999996310 13
Q ss_pred cEEEEEEEEeeEecCCCceecCccchhhhcC-C-C---CCEEEEEccCCCCcCCCC--CCCCcEEEEecCCchhhHHHHH
Q 043022 156 KTVSLCVKRLVYTNENGEIVKGVCSNFLCDL-K-P---GAEVKITGPVGKEMLMPR--DPNATVIMLATGTGIAPFRGFL 228 (361)
Q Consensus 156 ~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l-~-~---G~~v~i~gP~G~~~~~~~--~~~~~iv~Ia~GtGiaP~~~~l 228 (361)
+.++|+||+ .|.+|++|+++ . . |+.|.+.||+|.+..... +..+++|||||||||||+++|+
T Consensus 76 ~~l~l~vk~-----------~G~~T~~L~~~~~~~~~~G~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil 144 (220)
T cd06197 76 DEFEITVRK-----------KGPVTGFLFQVARRLREQGLEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAML 144 (220)
T ss_pred CEEEEEEEe-----------CCCCCHHHHHhhhcccCCCceEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHH
Confidence 799999987 48999999884 3 3 999999999998543321 2357899999999999999999
Q ss_pred HHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHH
Q 043022 229 WKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWEL 308 (361)
Q Consensus 229 ~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~ 308 (361)
++++..... ..+++|+|++|+.+|++|.+||.++.. . .+.+....
T Consensus 145 ~~l~~~~~~----~~~v~l~~~~r~~~~~~~~~el~~~~~-~--~~~~~~~~---------------------------- 189 (220)
T cd06197 145 RAILSSRNT----TWDITLLWSLREDDLPLVMDTLVRFPG-L--PVSTTLFI---------------------------- 189 (220)
T ss_pred HHHHhcccC----CCcEEEEEEecchhhHHHHHHHHhccC-C--ceEEEEEE----------------------------
Confidence 988754321 368999999999999999999977643 1 11221110
Q ss_pred hccCCeEEEEECCcchHHHHHHHHHHH
Q 043022 309 LKKDNTYVYMCGLRGMEKGIDDIMVSL 335 (361)
Q Consensus 309 l~~~~~~vyvCGp~~m~~~v~~~L~~~ 335 (361)
...||+|||++|++++.+.+.+.
T Consensus 190 ----~~~v~~CGP~~m~~~~~~~~~~~ 212 (220)
T cd06197 190 ----TSEVYLCGPPALEKAVLEWLEGK 212 (220)
T ss_pred ----eccEEEECcHHHHHHHHHHhhhc
Confidence 11799999999999999988764
No 71
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.97 E-value=4.6e-30 Score=276.80 Aligned_cols=232 Identities=17% Similarity=0.237 Sum_probs=184.9
Q ss_pred ccCCCCeeEEEEeEe---eecCCCCCCceEEEEeeCCCc---cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCC
Q 043022 79 FKPKTPYIGRCLLNT---KITGDDAPGETWHMVFSTEGE---VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDF 152 (361)
Q Consensus 79 ~~~~~~~~~~v~~~~---~~~~~~~~~~~~~l~l~~~~~---l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~ 152 (361)
..+.++..++|++++ +++++ ++.++|..|.. +.|.|||||.|.++.. +.. ..|+|||+|.|.
T Consensus 909 ~~~~~w~~~~l~~~~~~~~~~~~-----~~~~~f~lp~~~~~~~~~pGQfv~l~~~~~---g~~-~~R~YS~~S~p~--- 976 (1167)
T PTZ00306 909 LSKDKWTTVVVREVREGGQFGTG-----SRVLRFNLPGALQRSGLTLGQFIAIRGDWD---GQQ-LIGYYSPITLPD--- 976 (1167)
T ss_pred cCCCceEEEEEEEEeccccccCC-----eEEEEEECCCcccccCCCCCeEEEEEeeeC---CeE-EEEEeccCCCCC---
Confidence 356788999999987 45777 99999998753 4699999999997421 112 479999999996
Q ss_pred CCCcEEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCC---------CcCCCCCCCCcEEEEecCCchhh
Q 043022 153 GDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGK---------EMLMPRDPNATVIMLATGTGIAP 223 (361)
Q Consensus 153 ~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~---------~~~~~~~~~~~iv~Ia~GtGiaP 223 (361)
+.+.++|+||. + .|.+|+||+++++|++|.|+||+|. .|.++....+++|||||||||||
T Consensus 977 -~~~~i~l~Vr~-~---------~G~~S~~L~~l~~Gd~v~v~gp~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP 1045 (1167)
T PTZ00306 977 -DLGVISILARG-D---------KGTLKEWISALRPGDSVEMKACGGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAP 1045 (1167)
T ss_pred -CCCeEEEEEEc-C---------CChhHHHHhhCCCCCEEEEeCCcCccccccCccceeeeccCCCceEEEEECCccHhH
Confidence 56789999975 3 6999999999999999999998772 23344345579999999999999
Q ss_pred HHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHH
Q 043022 224 FRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYAN 303 (361)
Q Consensus 224 ~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~ 303 (361)
|++|+++++.....+ ...+++|+|++|+.+|++|.+||++|+++++++|+++++++++++.|.+..++|++.+.+.
T Consensus 1046 ~~sml~~~l~~~~~~--~~~~i~Llyg~r~~~dl~~~~eL~~l~~~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~~-- 1121 (1167)
T PTZ00306 1046 MLQIIRAALKKPYVD--SIESIRLIYAAEDVSELTYRELLESYRKENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQS-- 1121 (1167)
T ss_pred HHHHHHHHHhCcccC--CCceEEEEEEeCCHHHhhHHHHHHHHHHHCCCCEEEEEEECCCCcccCCCCCCCCHHHHHH--
Confidence 999999887643100 1268999999999999999999999999988779999999988777877788887643321
Q ss_pred HHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHcc
Q 043022 304 ELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAAND 339 (361)
Q Consensus 304 ~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~ 339 (361)
+..... .+..+|+|||+.|++++.+.|.+.|.+.
T Consensus 1122 -~l~~~~-~~~~vyiCGP~~mv~~v~~~L~~~G~~~ 1155 (1167)
T PTZ00306 1122 -ALQPPS-KDLLVAICGPPVMQRAVKADLLALGYNM 1155 (1167)
T ss_pred -hcCCCC-CCeEEEEeCCHHHHHHHHHHHHHcCCCH
Confidence 111111 3678999999999999999999987764
No 72
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.97 E-value=8e-30 Score=231.97 Aligned_cols=214 Identities=23% Similarity=0.318 Sum_probs=171.9
Q ss_pred CCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEE
Q 043022 81 PKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSL 160 (361)
Q Consensus 81 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~ 160 (361)
...++.++|+..++.+.+ +..++....++..++||||..+.++...- ...+||||||++.. .++++|
T Consensus 212 ~s~~y~~~vt~~~r~~~~-----t~eit~~l~~~~~~qaGQFAfLk~~~~~~---~~~~HPFTIa~s~~-----~sel~F 278 (438)
T COG4097 212 RSFPYLGKVTAPQRGNVD-----TLEITIGLQGPWLYQAGQFAFLKIEIEEF---RMRPHPFTIACSHE-----GSELRF 278 (438)
T ss_pred cccccceEEechhhcCcc-----hheeecccCCcccccCCceEEEEeccccc---cCCCCCeeeeeCCC-----CceEEE
Confidence 456888999999999998 88888888887779999999999876431 33589999999974 458999
Q ss_pred EEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhccccc
Q 043022 161 CVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDY 239 (361)
Q Consensus 161 ~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~ 239 (361)
.||. -|.+|.-|++ +++|+++.++||||.+.... ....-|+||||+|||||+++++.+.....
T Consensus 279 sIK~-----------LGD~Tk~l~dnLk~G~k~~vdGPYG~F~~~~--g~~~QVWIAGGIGITPFis~l~~l~~~~s--- 342 (438)
T COG4097 279 SIKA-----------LGDFTKTLKDNLKVGTKLEVDGPYGKFDFER--GLNTQVWIAGGIGITPFISMLFTLAERKS--- 342 (438)
T ss_pred Eehh-----------hhhhhHHHHHhccCCceEEEecCcceeeccc--CCcccEEEecCcCcchHHHHHHhhccccc---
Confidence 9998 4999999998 99999999999999865432 22348999999999999999998876332
Q ss_pred ccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhcc-CCeEEEE
Q 043022 240 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKK-DNTYVYM 318 (361)
Q Consensus 240 ~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~-~~~~vyv 318 (361)
.++++|||++|+.++..|.+||++++++.+ ++.+|..-|. .++|+.....+ ...+. ....||+
T Consensus 343 --~~~V~L~Y~~~n~e~~~y~~eLr~~~qkl~-~~~lHiiDSs-------~~g~l~~e~le------r~~~~~~~~sv~f 406 (438)
T COG4097 343 --DPPVHLFYCSRNWEEALYAEELRALAQKLP-NVVLHIIDSS-------KDGYLDQEDLE------RYPDRPRTRSVFF 406 (438)
T ss_pred --CCceEEEEEecCCchhHHHHHHHHHHhcCC-CeEEEEecCC-------CCCccCHHHhh------ccccccCcceEEE
Confidence 378999999999999999999999999888 8888873333 44454321111 11111 2348999
Q ss_pred ECCcchHHHHHHHHHHHHHcc
Q 043022 319 CGLRGMEKGIDDIMVSLAAND 339 (361)
Q Consensus 319 CGp~~m~~~v~~~L~~~g~~~ 339 (361)
|||.+|++.+++.|++.+.+-
T Consensus 407 CGP~~m~dsL~r~l~~~~~~i 427 (438)
T COG4097 407 CGPIKMMDSLRRDLKKQNVPI 427 (438)
T ss_pred EcCHHHHHHHHHHHHHcCCCH
Confidence 999999999999999987774
No 73
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.96 E-value=7.8e-29 Score=260.79 Aligned_cols=224 Identities=16% Similarity=0.210 Sum_probs=174.7
Q ss_pred cCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCc-cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEE
Q 043022 80 KPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGE-VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTV 158 (361)
Q Consensus 80 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~-l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l 158 (361)
.....+.++|++++.++++ ++.|+|..+.. ..|+||||+.|.+...+ ..|+|||++.+. +.+.|
T Consensus 644 t~~~~~~~~I~~~~~lt~d-----v~~~~l~~p~~~~~~~PGQFv~L~~~~~g------e~rP~SIas~~~----~~g~i 708 (944)
T PRK12779 644 TELGQIPQTIVGKVQLAGG-----IVEFTVRAPMVARSAQAGQFVRVLPWEKG------ELIPLTLADWDA----EKGTI 708 (944)
T ss_pred hhccceEEEEEEEEEecCC-----EEEEEEeCCCccccCCCCceEEEEeCCCC------CEEeEEccCCCC----CCCEE
Confidence 3445788999999999999 99999998764 46999999999974322 358999999875 57899
Q ss_pred EEEEEEeeEecCCCceecCccchhhhcCCCCCEEE-EEccCCCCcCCCC-CCCCcEEEEecCCchhhHHHHHHHHHhhcc
Q 043022 159 SLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVK-ITGPVGKEMLMPR-DPNATVIMLATGTGIAPFRGFLWKMFFEKH 236 (361)
Q Consensus 159 ~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~-i~gP~G~~~~~~~-~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~ 236 (361)
+|+|+.+ |..|.+|+++++|+.|. |.||+|++|..+. ...+++||||||+||||+++|+++++..+
T Consensus 709 ~l~Vk~v-----------G~~T~~L~~lk~Gd~l~~I~GPlG~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g- 776 (944)
T PRK12779 709 DLVVQGM-----------GTSSLEINRMAIGDAFSGIAGPLGRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLG- 776 (944)
T ss_pred EEEEEee-----------ccHHHHHhcCCCcCEEeeeecCCCCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHCC-
Confidence 9999874 88899998999999995 9999999876543 22468999999999999999999887543
Q ss_pred cccccCCeEEEEEeccCCcccccHHH---HHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCC
Q 043022 237 EDYKFNGLAWLFLGVPTSSSLLYKEE---FEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDN 313 (361)
Q Consensus 237 ~~~~~~~~i~L~~g~r~~~d~~~~~e---l~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~ 313 (361)
.+++|+||+|+.+++++.++ |++|++.+++.+++++. + ++.|.|.+++|++.+.+...+....-....
T Consensus 777 ------~~V~li~G~Rs~edl~~~del~~L~~la~~~~~~~~v~~t-t--ddgs~G~~G~Vt~~l~~ll~~~~~~~~~~~ 847 (944)
T PRK12779 777 ------NHVTLISGFRAKEFLFWTGDDERVGKLKAEFGDQLDVIYT-T--NDGSFGVKGFVTGPLEEMLKANQQGKGRTI 847 (944)
T ss_pred ------CCEEEEEEeCCHHHhhhHHHHHHHHHHHHHcCCCeEEEEE-e--cCCCCCCccccChHHHHHHHhcccccccCC
Confidence 57999999999999888766 55677777755666554 3 245677889998877654322100000013
Q ss_pred eEEEEECCcchHHHHHHHHHHHHHcc
Q 043022 314 TYVYMCGLRGMEKGIDDIMVSLAAND 339 (361)
Q Consensus 314 ~~vyvCGp~~m~~~v~~~L~~~g~~~ 339 (361)
..||+|||+.|++++.+.|.+.|.+.
T Consensus 848 ~~Vy~CGP~~Mmkav~~~l~~~Gv~~ 873 (944)
T PRK12779 848 AEVIAIGPPLMMRAVSDLTKPYGVKT 873 (944)
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCCe
Confidence 67999999999999999998887764
No 74
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.96 E-value=6.8e-29 Score=258.68 Aligned_cols=204 Identities=16% Similarity=0.214 Sum_probs=166.0
Q ss_pred EEEEeEeeecCCCCCCceEEEEeeCCCc-cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEe
Q 043022 87 GRCLLNTKITGDDAPGETWHMVFSTEGE-VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRL 165 (361)
Q Consensus 87 ~~v~~~~~~~~~~~~~~~~~l~l~~~~~-l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~ 165 (361)
.+|++++.++++ ++.|+|+.|.. ..|+||||+.|.++..+ ..|+|||+|.+. +.+.++|+|+.
T Consensus 2 ~~I~~~~~~t~~-----v~~l~l~~p~~~~~~~pGQFv~l~~~~~~------~~rp~Si~~~~~----~~g~i~~~vk~- 65 (752)
T PRK12778 2 NKIVEKEIFSEK-----VFLLEIEAPLIAKSRKPGQFVIVRVGEKG------ERIPLTIADADP----EKGTITLVIQE- 65 (752)
T ss_pred CEEEEEEEEcCC-----EEEEEEeCCchhccCCCCeeEEEEeCCCC------CeeEEEeeeeCC----CCCEEEEEEEE-
Confidence 468999999999 99999998753 46999999999986432 368999999986 57899999987
Q ss_pred eEecCCCceecCccchhhhcCCCCCEE-EEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCe
Q 043022 166 VYTNENGEIVKGVCSNFLCDLKPGAEV-KITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGL 244 (361)
Q Consensus 166 ~~~~~~~~~~~G~~S~~L~~l~~G~~v-~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~ 244 (361)
.|.+|.+|+++++||.| .|.||+|++|..+ ..++++|||||+||||+++++++++..+ .+
T Consensus 66 ----------vG~~T~~L~~l~~Gd~v~~v~GP~G~~~~~~--~~~~~llvaGG~GiaPl~~l~~~l~~~~-------~~ 126 (752)
T PRK12778 66 ----------VGLSTTKLCELNEGDYITDVVGPLGNPSEIE--NYGTVVCAGGGVGVAPMLPIVKALKAAG-------NR 126 (752)
T ss_pred ----------cCchHHHHhcCCCCCEeCeEeCCCCCCccCC--CCCeEEEEECCEeHHHHHHHHHHHHHCC-------Ce
Confidence 48999999999999999 7999999988754 2479999999999999999999987643 47
Q ss_pred EEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcch
Q 043022 245 AWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGM 324 (361)
Q Consensus 245 i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m 324 (361)
++||||+|+.++++|.++|++|..+ + .++ + ++.|.|.++++++.+.+... ... +...||+|||+.|
T Consensus 127 v~l~~g~r~~~~l~~~~el~~~~~~----~--~~~-t--~dg~~g~~G~v~~~l~~~~~----~~~-~~~~vy~CGP~~M 192 (752)
T PRK12778 127 VITILGGRSKELIILEDEMRESSDE----V--IIM-T--DDGSYGRKGLVTDGLEEVIK----RET-KVDKVFAIGPAIM 192 (752)
T ss_pred EEEEeccCCHHHhhhHHHHHhhcCe----E--EEE-E--CCCCCCCcccHHHHHHHHhh----cCC-CCCEEEEECCHHH
Confidence 9999999999999999999988542 2 222 2 34577888898887655331 111 2357999999999
Q ss_pred HHHHHHHHHHHHHcc
Q 043022 325 EKGIDDIMVSLAAND 339 (361)
Q Consensus 325 ~~~v~~~L~~~g~~~ 339 (361)
++++.+.+.+.|...
T Consensus 193 ~~~v~~~l~~~gv~~ 207 (752)
T PRK12778 193 MKFVCLLTKKYGIPT 207 (752)
T ss_pred HHHHHHHHHHcCCCE
Confidence 999999998877653
No 75
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.96 E-value=2.3e-28 Score=220.80 Aligned_cols=204 Identities=12% Similarity=0.166 Sum_probs=151.0
Q ss_pred EEeEeeecCCCCCCceEEEEeeCCCc---cccCCCcEEEEecCCCCC---------------CCCCCCceecccccCCCC
Q 043022 89 CLLNTKITGDDAPGETWHMVFSTEGE---VPYKEGQSIGVIADGVDK---------------NAKPHKLRLYSIASSALG 150 (361)
Q Consensus 89 v~~~~~~~~~~~~~~~~~l~l~~~~~---l~~~pGQ~v~l~~~~~~~---------------~~~~~~~R~ySias~p~~ 150 (361)
|+++++++++ +++|+|+.+.. ..|.||||+.|.++..+. ...+...|+|||++.+.
T Consensus 1 V~~~~~~s~~-----~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~- 74 (235)
T cd06193 1 VVRVERLTPH-----MRRITLGGPDLAGFPSDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDP- 74 (235)
T ss_pred CceeEecCCC-----EEEEEEecCccccCCCCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcC-
Confidence 4678899998 99999999864 569999999999864321 00123579999999875
Q ss_pred CCCCCcEEEEEEEEeeEecCCCceec-CccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHH
Q 043022 151 DFGDSKTVSLCVKRLVYTNENGEIVK-GVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLW 229 (361)
Q Consensus 151 ~~~~~~~l~~~V~~~~~~~~~~~~~~-G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~ 229 (361)
+.++++|.|+.++ . |.+|+||+++++||+|.+.||+|.++..+ ..+++||||+||||||+++|++
T Consensus 75 ---~~~~l~~~v~~~~---------~~G~~s~~l~~l~~Gd~v~v~gP~G~~~~~~--~~~~~vlia~GtGi~p~~~il~ 140 (235)
T cd06193 75 ---EAGELDIDFVLHG---------DEGPASRWAASAQPGDTLGIAGPGGSFLPPP--DADWYLLAGDETALPAIAAILE 140 (235)
T ss_pred ---CCCEEEEEEEeCC---------CCCchHHHHhhCCCCCEEEEECCCCCCCCCC--CcceEEEEeccchHHHHHHHHH
Confidence 5789999998875 5 89999999999999999999999976643 4578999999999999999999
Q ss_pred HHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHh
Q 043022 230 KMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELL 309 (361)
Q Consensus 230 ~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l 309 (361)
++... .+++++|++|+.+|+++.+++ . +++++...+++... +..+. + ....+ ...
T Consensus 141 ~~~~~--------~~~~~~~~~~~~~d~~~l~~~-------~-~~~~~~~~~~~~~~--~~~~~----~--~~~~~-~~~ 195 (235)
T cd06193 141 ELPAD--------ARGTALIEVPDAADEQPLPAP-------A-GVEVTWLHRGGAEA--GELAL----L--AVRAL-APP 195 (235)
T ss_pred hCCCC--------CeEEEEEEECCHHHccccCCC-------C-CcEEEEEeCCCCCc--chhHH----H--HHhcc-cCC
Confidence 77531 479999999998665433322 2 66777665543221 11110 0 01111 111
Q ss_pred ccCCeEEEEECCcchHHHHHHHHHHH-HHc
Q 043022 310 KKDNTYVYMCGLRGMEKGIDDIMVSL-AAN 338 (361)
Q Consensus 310 ~~~~~~vyvCGp~~m~~~v~~~L~~~-g~~ 338 (361)
.+...+|+|||++|++++++.|.+. |..
T Consensus 196 -~~~~~vyicGp~~mv~~v~~~l~~~~g~~ 224 (235)
T cd06193 196 -AGDGYVWIAGEAGAVRALRRHLREERGVP 224 (235)
T ss_pred -CCCeEEEEEccHHHHHHHHHHHHHccCCC
Confidence 1467999999999999999999874 665
No 76
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.95 E-value=1.4e-27 Score=212.01 Aligned_cols=179 Identities=18% Similarity=0.248 Sum_probs=138.7
Q ss_pred eEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCceecCccchhh
Q 043022 104 TWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFL 183 (361)
Q Consensus 104 ~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L 183 (361)
++.++|..+..+.|.||||+.|.++... ...+.|+|||+|.+.. +.+.++|+||.. +|.++..+
T Consensus 12 ~~~l~~~~~~~~~~~pGq~v~l~~~~~~---~~~~~hpfsias~~~~---~~~~i~~~vk~~----------~G~~t~~~ 75 (210)
T cd06186 12 VIRLTIPKPKPFKWKPGQHVYLNFPSLL---SFWQSHPFTIASSPED---EQDTLSLIIRAK----------KGFTTRLL 75 (210)
T ss_pred EEEEEEecCCCCccCCCCEEEEEeCCCC---CCcccCCcEeeeCCCC---CCCEEEEEEEec----------CChHHHHH
Confidence 9999999988889999999999998651 1457899999999852 158999999986 48888877
Q ss_pred hcCC------CCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcc-
Q 043022 184 CDLK------PGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSS- 256 (361)
Q Consensus 184 ~~l~------~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d- 256 (361)
..++ .|+++.++||+|.++. +....+++|||||||||||+++++++++..... .....++.|+|++|+.++
T Consensus 76 ~~~~~~~~~~~~~~v~v~GP~G~~~~-~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~-~~~~~~v~l~w~~r~~~~~ 153 (210)
T cd06186 76 RKALKSPGGGVSLKVLVEGPYGSSSE-DLLSYDNVLLVAGGSGITFVLPILRDLLRRSSK-TSRTRRVKLVWVVRDREDL 153 (210)
T ss_pred HHHHhCcCCCceeEEEEECCCCCCcc-ChhhCCeEEEEeccccHhhhHHHHHHHHhhhhc-cCCccEEEEEEEECCHHHh
Confidence 7666 8999999999998762 223567999999999999999999998765321 001368999999999998
Q ss_pred cccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHH
Q 043022 257 LLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVS 334 (361)
Q Consensus 257 ~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~ 334 (361)
.+|.++|.+..+... ..++++.+++ +|+|||.+|+++++..+.+
T Consensus 154 ~~~~~~l~~~~~~~~-~~~~~i~~T~---------------------------------v~~CGp~~~~~~~~~~~~~ 197 (210)
T cd06186 154 EWFLDELRAAQELEV-DGEIEIYVTR---------------------------------VVVCGPPGLVDDVRNAVAK 197 (210)
T ss_pred HHHHHHHHhhhhccC-CceEEEEEee---------------------------------EEEECchhhccHHHHHHhh
Confidence 489999976111111 1133333332 8999999999999988877
No 77
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.94 E-value=3e-26 Score=243.26 Aligned_cols=202 Identities=12% Similarity=0.188 Sum_probs=162.3
Q ss_pred EEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEe
Q 043022 87 GRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRL 165 (361)
Q Consensus 87 ~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~ 165 (361)
.+|++++.++++ ++.++|..|. ...|+|||||.|.++... ..|+|||++.+. +.+.|+|.|++
T Consensus 2 ~~I~~~~~l~~~-----~~~l~l~ap~~a~~~~PGQFV~l~~~~~~------errplSIa~~~~----~~g~i~l~vk~- 65 (1006)
T PRK12775 2 YSIVRREAFSDT-----TFLWEVEAPDVAASAEPGHFVMLRLYEGA------ERIPLTVADFDR----KKGTITMVVQA- 65 (1006)
T ss_pred cEEEEEEEecCC-----EEEEEEecCCcccCCCCCeeEEEEeCCCC------eeEEEEecCcCC----CCCEEEEEEEe-
Confidence 478999999998 9999999887 456999999999975321 368999999875 57899999987
Q ss_pred eEecCCCceecCccchhhh-cCCCCCEE-EEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCC
Q 043022 166 VYTNENGEIVKGVCSNFLC-DLKPGAEV-KITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNG 243 (361)
Q Consensus 166 ~~~~~~~~~~~G~~S~~L~-~l~~G~~v-~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~ 243 (361)
.|.+|.+|+ ++++||.| .+.||+|.+|... ..+++||||||+||||+++|++++...+ .
T Consensus 66 ----------vG~~T~~L~~~lk~Gd~l~~v~GPlG~~~~~~--~~~~vllVaGGiGIAPl~s~~r~l~~~g-------~ 126 (1006)
T PRK12775 66 ----------LGKTTREMMTKFKAGDTFEDFVGPLGLPQHID--KAGHVVLVGGGLGVAPVYPQLRAFKEAG-------A 126 (1006)
T ss_pred ----------cCcHHHHHHhcCCCCCEEeeeecCCCCCCCCC--CCCeEEEEEEhHHHHHHHHHHHHHHhCC-------C
Confidence 489999996 69999999 7999999877653 2468999999999999999999887543 4
Q ss_pred eEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcc
Q 043022 244 LAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRG 323 (361)
Q Consensus 244 ~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~ 323 (361)
+++++||+|+.++++|.+||+++.. .+.+ + + ++.|.|.+++|++.+.+...+ .....+|+|||+.
T Consensus 127 ~v~li~g~R~~~~l~~~del~~~~~----~~~v--~-t--ddgs~G~~G~vt~~l~~~l~~------~~~d~vy~CGP~~ 191 (1006)
T PRK12775 127 RTTGIIGFRNKDLVFWEDKFGKYCD----DLIV--C-T--DDGSYGKPGFVTAALKEVCEK------DKPDLVVAIGPLP 191 (1006)
T ss_pred cEEEEEeCCChHHcccHHHHHhhcC----cEEE--E-E--CCCCCCCCCChHHHHHHHhcc------CCCCEEEEECCHH
Confidence 6999999999999999999987743 3322 1 2 245677888888777653311 1235799999999
Q ss_pred hHHHHHHHHHHHHHc
Q 043022 324 MEKGIDDIMVSLAAN 338 (361)
Q Consensus 324 m~~~v~~~L~~~g~~ 338 (361)
|++++.+.+++.|.+
T Consensus 192 Mm~av~~~~~~~gi~ 206 (1006)
T PRK12775 192 MMNACVETTRPFGVK 206 (1006)
T ss_pred HHHHHHHHHHHCCCc
Confidence 999999999887663
No 78
>PLN02292 ferric-chelate reductase
Probab=99.92 E-value=9.5e-24 Score=213.58 Aligned_cols=208 Identities=17% Similarity=0.207 Sum_probs=151.6
Q ss_pred eeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEE
Q 043022 85 YIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKR 164 (361)
Q Consensus 85 ~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~ 164 (361)
..+++++++.++++ +.+++++.+..+.|+||||+.+.++..+ ..+.|+|||+|+|.. +++.++|+||.
T Consensus 325 ~~~~Iv~~~~l~~d-----vv~L~~~~~~~~~~~PGQ~vfL~~P~~s----~~q~HPFTIaSsp~~---~~~~l~l~IK~ 392 (702)
T PLN02292 325 NNVKLVSARVLPCD-----TVELNFSKNPMLMYSPTSIMFVNIPSIS----KLQWHPFTITSSSKL---EPEKLSVMIKS 392 (702)
T ss_pred cceEEEEEEEcCCC-----EEEEEEEcCCCCCcCCCCeEEEEEccCC----ccceeeeEeeccCCC---CCCEEEEEEEc
Confidence 35678888888887 9999999888889999999999997643 457999999999843 46789999996
Q ss_pred eeEecCCCceecCccchhhhc-CCCCC-----EEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccc
Q 043022 165 LVYTNENGEIVKGVCSNFLCD-LKPGA-----EVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHED 238 (361)
Q Consensus 165 ~~~~~~~~~~~~G~~S~~L~~-l~~G~-----~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~ 238 (361)
.|.+|++|++ ++.|+ +|.++||+|.++.. ....++++|||||+||||++++++++.++....
T Consensus 393 -----------~G~~T~~L~~~l~~gd~i~~~~V~VeGPYG~~~~~-~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~ 460 (702)
T PLN02292 393 -----------QGKWSTKLYHMLSSSDQIDRLAVSVEGPYGPASTD-FLRHESLVMVSGGSGITPFISIIRDLIYTSSTE 460 (702)
T ss_pred -----------CCchhHHHHHhCCCCCccccceEEEECCccCCccc-cccCCcEEEEEeccCHHHHHHHHHHHHhccccc
Confidence 5889999987 78888 46799999986532 234579999999999999999999987653221
Q ss_pred cccCCeEEEEEeccCCcccccHHHHHH-------HHHhCCCceEEEEEecCCcccCC-CCeeEecchHHHhHHHHHH-Hh
Q 043022 239 YKFNGLAWLFLGVPTSSSLLYKEEFEK-------MKEKAPENFRLDFAVSREQKNEK-GEKMYIQTRMAEYANELWE-LL 309 (361)
Q Consensus 239 ~~~~~~i~L~~g~r~~~d~~~~~el~~-------l~~~~~~~~~~~~~~s~~~~~~~-g~~~~v~~~l~~~~~~~~~-~l 309 (361)
....+++.|+|++|+.+|+++.+++.. +++++ ++++...++++.+... +..+ . .+..++.+. .-
T Consensus 461 ~~~~~~V~LIw~vR~~~Dl~~ld~l~~e~~~~~~l~~~~--~~~i~iyvTr~~~~~~~~~~~--~---~~~~~~~~~~p~ 533 (702)
T PLN02292 461 TCKIPKITLICAFKNSSDLSMLDLILPTSGLETELSSFI--DIQIKAFVTREKEAGVKESTG--N---MNIIKTLWFKPN 533 (702)
T ss_pred cCCCCcEEEEEEECCHHHhhHHHHHHHhhhhHHHHhhcC--CceEEEEEeCCCCCCCccccc--c---hhhhhhhcCCCC
Confidence 111268999999999999988776543 22333 7888888888754321 1111 1 111111111 11
Q ss_pred ccCCeEEEEECCcc
Q 043022 310 KKDNTYVYMCGLRG 323 (361)
Q Consensus 310 ~~~~~~vyvCGp~~ 323 (361)
..+...+.+|||+.
T Consensus 534 ~~~~~~~~~~Gp~~ 547 (702)
T PLN02292 534 LSDQPISPILGPNS 547 (702)
T ss_pred CCCCceEEEeCCCc
Confidence 12577899999985
No 79
>PLN02631 ferric-chelate reductase
Probab=99.90 E-value=1.1e-22 Score=205.58 Aligned_cols=172 Identities=19% Similarity=0.313 Sum_probs=136.5
Q ss_pred EEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEee
Q 043022 87 GRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLV 166 (361)
Q Consensus 87 ~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~ 166 (361)
+++++.+.+.++ +.++++..+..+.|+||||+.|.++... ..+.|+|||+|.|.. +++.++|+||.
T Consensus 310 ~~lv~~~~l~~d-----~l~l~~~~~~~~~~~PGQfvfL~~p~~s----~~q~HPFSIaSsp~~---~~~~L~~~IK~-- 375 (699)
T PLN02631 310 SRLVSARILPSD-----NLELTFSKTPGLHYTPTSILFLHVPSIS----KLQWHPFTITSSSNL---EKDTLSVVIRR-- 375 (699)
T ss_pred EEEEEEEEeCCC-----eEEEEEEcCCCCcCCCCceEEEEeccCC----ccceEEEEEeccCCC---CCCEEEEEEEc--
Confidence 567777777666 8999998777789999999999998643 457899999999853 46789999997
Q ss_pred EecCCCceecCccchhhhc-CCC-CC--EEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccC
Q 043022 167 YTNENGEIVKGVCSNFLCD-LKP-GA--EVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFN 242 (361)
Q Consensus 167 ~~~~~~~~~~G~~S~~L~~-l~~-G~--~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~ 242 (361)
.|.+|++|++ ++. |+ +|.++||||.+. .+....+++||||||+||||+++++++++.+........
T Consensus 376 ---------~Gg~T~~L~~~l~~~g~~i~V~VeGPYG~~~-~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~ 445 (699)
T PLN02631 376 ---------QGSWTQKLYTHLSSSIDSLEVSTEGPYGPNS-FDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKL 445 (699)
T ss_pred ---------CChHHHHHHHhhhcCCCeeEEEEECCCCCCC-CCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCC
Confidence 5889999987 654 45 688999999643 233455789999999999999999999886543222223
Q ss_pred CeEEEEEeccCCcccccHHHHHHH------HHhCCCceEEEEEecCCc
Q 043022 243 GLAWLFLGVPTSSSLLYKEEFEKM------KEKAPENFRLDFAVSREQ 284 (361)
Q Consensus 243 ~~i~L~~g~r~~~d~~~~~el~~l------~~~~~~~~~~~~~~s~~~ 284 (361)
+++.|+|++|+.+|++|.|||..+ .++ . +++++.++||++
T Consensus 446 ~~V~Li~~vR~~~dL~f~deL~~l~~~~~~l~~-~-ni~i~iyVTR~~ 491 (699)
T PLN02631 446 PDVLLVCSFKHYHDLAFLDLIFPLDISVSDISR-L-NLRIEAYITRED 491 (699)
T ss_pred CcEEEEEEECCHHHhhhHHHHhhhccchhhhhc-C-ceEEEEEEcCCC
Confidence 589999999999999999999863 223 3 899999999963
No 80
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=99.89 E-value=4.9e-22 Score=201.72 Aligned_cols=203 Identities=20% Similarity=0.276 Sum_probs=144.6
Q ss_pred EEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEe
Q 043022 89 CLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYT 168 (361)
Q Consensus 89 v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~ 168 (361)
+++.+....+ +.++++..+..+.|+||||+.+.++..+ +.+.|+|||+|.|.. +++.++|+||..
T Consensus 316 vvs~~~~~~~-----~v~l~i~r~~~~~f~PGQfV~L~vp~~s----~~q~HPFSIaS~p~~---~~~~l~~~IK~~--- 380 (722)
T PLN02844 316 ILSARLFPCK-----AIELVLPKDPGLKYAPTSVIFMKIPSIS----RFQWHPFSITSSSNI---DDHTMSVIIKCE--- 380 (722)
T ss_pred EEEEEEecCC-----EEEEEEECCCCCCcCCCeeEEEEECCCC----ceeEEEEEeecCCCC---CCCeEEEEEEeC---
Confidence 3444444444 8888888887889999999999998654 457999999998753 567899999873
Q ss_pred cCCCceecCccchhhhc-----CCCC------CEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhccc
Q 043022 169 NENGEIVKGVCSNFLCD-----LKPG------AEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHE 237 (361)
Q Consensus 169 ~~~~~~~~G~~S~~L~~-----l~~G------~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~ 237 (361)
|..|+.|.+ +++| .++.++||||.+. .+....++++|||||+||||++++++++...+..
T Consensus 381 --------gG~T~~L~~~i~~~l~~g~~~~~~~~v~VeGPYG~~s-~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~ 451 (722)
T PLN02844 381 --------GGWTNSLYNKIQAELDSETNQMNCIPVAIEGPYGPAS-VDFLRYDSLLLVAGGIGITPFLSILKEIASQSSS 451 (722)
T ss_pred --------CCchHHHHHHHHhhccCCCCcccceEEEEECCccCCC-CCccCCCeEEEEEcCcCHHHHHHHHHHHHhcccc
Confidence 556666654 2334 3799999999753 2323457999999999999999999998864332
Q ss_pred ccccCCeEEEEEeccCCcccccHHHHHHH-----HHhCCCceEEEEEecCCcccCCCCeeEecchHHH--hHHHHHHHhc
Q 043022 238 DYKFNGLAWLFLGVPTSSSLLYKEEFEKM-----KEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAE--YANELWELLK 310 (361)
Q Consensus 238 ~~~~~~~i~L~~g~r~~~d~~~~~el~~l-----~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~--~~~~~~~~l~ 310 (361)
......++.|+|++|+.+|+.+.+++.+. .+.. ++++++.++|+... ...+.+.+.. ...++. ++
T Consensus 452 ~~~~~~~V~LIw~vR~~~dL~~~del~~~l~~~~~~~~--~lkl~iyVTRE~~~----~~rl~~~i~~~~~~~~~~--~~ 523 (722)
T PLN02844 452 RYRFPKRVQLIYVVKKSQDICLLNPISSLLLNQSSNQL--NLKLKVFVTQEEKP----NATLRELLNQFSQVQTVN--FS 523 (722)
T ss_pred ccCCCCcEEEEEEECCHHHhhhHHHHHHHhHHhHHHhc--CceEEEEECCCCCC----CCchhhHhhccchhhhcC--CC
Confidence 22223679999999999999999988632 2222 78888889998643 1234443332 111111 34
Q ss_pred cCCeEEEEECCcc
Q 043022 311 KDNTYVYMCGLRG 323 (361)
Q Consensus 311 ~~~~~vyvCGp~~ 323 (361)
++...+.+||+..
T Consensus 524 ~~~~~~~i~G~~~ 536 (722)
T PLN02844 524 TKCSRYAIHGLES 536 (722)
T ss_pred CCCCceEEeCCCc
Confidence 4567799999975
No 81
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.85 E-value=4.2e-21 Score=152.28 Aligned_cols=109 Identities=30% Similarity=0.494 Sum_probs=90.3
Q ss_pred EEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeE
Q 043022 214 MLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMY 293 (361)
Q Consensus 214 ~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~ 293 (361)
|||||||||||++|+++++..+. ..+++|+||+|+.+|++|.++|+++...+++++.+..+ ++.++.|.+.+++
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~~-----~~~v~l~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~ 74 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERND-----NRKVTLFYGARTPEDLLFRDELEALAQEYPNRFHVVYV-SSPDDGWDGFKGR 74 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHTC-----TSEEEEEEEESSGGGSTTHHHHHHHHHHSTTCEEEEEE-TTTTSSTTSEESS
T ss_pred CeecceeHHHHHHHHHHHHHhCC-----CCCEEEEEEEcccccccchhHHHHHHhhcccccccccc-cccccccCCceee
Confidence 79999999999999999987632 47999999999999999999999999998854777665 6666777788999
Q ss_pred ecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHH
Q 043022 294 IQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDD 330 (361)
Q Consensus 294 v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~ 330 (361)
|++.+.+.... ......+..||+|||++|+++|++
T Consensus 75 v~~~~~~~~~~--~~~~~~~~~v~iCGp~~m~~~v~~ 109 (109)
T PF00175_consen 75 VTDLLLEDLLP--EKIDPDDTHVYICGPPPMMKAVRK 109 (109)
T ss_dssp HHHHHHHHHHH--HHHCTTTEEEEEEEEHHHHHHHHH
T ss_pred hhHHHHHhhcc--cccCCCCCEEEEECCHHHHHHhcC
Confidence 99988654433 233346899999999999999874
No 82
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=99.84 E-value=1.9e-21 Score=170.21 Aligned_cols=218 Identities=21% Similarity=0.262 Sum_probs=146.0
Q ss_pred CCeeEEEEeEeeecCCCCCCceEEEEeeCCC----ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEE
Q 043022 83 TPYIGRCLLNTKITGDDAPGETWHMVFSTEG----EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTV 158 (361)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~----~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l 158 (361)
.+...+|.+++.++.| +..+.+..-. ..+..|||||.+...-.... ...-|.||.+++... ..+.+
T Consensus 148 G~~~F~vT~~~~~sSD-----v~~~~~~PK~~~~~~~~~~PGQYvsV~~~~~~~~--~k~~~~~~~S~~~~t---~rN~~ 217 (385)
T KOG3378|consen 148 GEVEFKVTELINESSD-----VKSVYLGPKDPAFRISHAHPGQYVSVLWEIPGLS--HKTLREYSLSNRVDT---CRNQF 217 (385)
T ss_pred Cccceeeeeeeccccc-----eeEEEecCCCcceeeccCCCCceEEEeecCCccc--hhHHHHHHHhhhhhh---hccce
Confidence 3567889999999998 8998887632 35689999999985433211 113355555554432 57899
Q ss_pred EEEEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCC--CCCCCcEEEEecCCchhhHHHHHHHHHhhc
Q 043022 159 SLCVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMP--RDPNATVIMLATGTGIAPFRGFLWKMFFEK 235 (361)
Q Consensus 159 ~~~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~--~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~ 235 (361)
.|.||++. +|.+|+|+|+ ++.||.|.++.|-|+|.+.. .+.++|++++|||+||||+++|++..+.
T Consensus 218 R~sVr~~A---------~G~VS~~~H~~~KVGD~v~~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~-- 286 (385)
T KOG3378|consen 218 RISVRRVA---------GGVVSNFVHDNLKVGDIVGVSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALL-- 286 (385)
T ss_pred eEEEeehh---------chhhHHHhhccccccceeeccCCCccceeehhhhccCCceEEecCCcCccccHHHHHHHHh--
Confidence 99999987 8999999998 99999999999999975432 3556899999999999999999987653
Q ss_pred ccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhH-HHHHHHhccCCe
Q 043022 236 HEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYA-NELWELLKKDNT 314 (361)
Q Consensus 236 ~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~-~~~~~~l~~~~~ 314 (361)
.|..| .+...++++..+...+.+..-.++.+.... .+..|...+...+ ++..+.++...+
T Consensus 287 ------------C~~~R-----P~~~~~~~~~~K~k~~~K~~e~~~~E~s~~--~~~IV~~~~~~iI~~~~L~~~~~s~~ 347 (385)
T KOG3378|consen 287 ------------CYSSR-----PFKQWLEQLKLKYKENLKLKEFFSEESSVT--KEQIVDEVMTRIINEEDLEKLDLSEC 347 (385)
T ss_pred ------------cCCCC-----cHHHHHHHHHHHHHHHHHHHHHHHHhhccc--hhhhhhhhhhhhcCHHHhhhcChhhC
Confidence 22223 333344444332221222222233322110 1112322222222 122233444689
Q ss_pred EEEEECCcchHHHHHHHHHHHHHccC
Q 043022 315 YVYMCGLRGMEKGIDDIMVSLAANDG 340 (361)
Q Consensus 315 ~vyvCGp~~m~~~v~~~L~~~g~~~~ 340 (361)
+||+|||..+|+.+...|.++|...+
T Consensus 348 DiY~~G~~~~M~~~~~~L~~L~~~~~ 373 (385)
T KOG3378|consen 348 DIYMLGPNNYMRFVKQELVKLGVEPN 373 (385)
T ss_pred ceeeeCcHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999998875
No 83
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.80 E-value=1.9e-18 Score=175.63 Aligned_cols=227 Identities=17% Similarity=0.219 Sum_probs=160.4
Q ss_pred eEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEe
Q 043022 86 IGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRL 165 (361)
Q Consensus 86 ~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~ 165 (361)
..++.++.-+..+ +.++++..|..++|+||||+.|.+|... .+|.|||||+|+| +++.+.++||.
T Consensus 356 ~~~i~~~~llp~~-----vi~L~~~Kp~~f~y~~Gqyifv~~p~ls----~~qwHPFTItSsp-----~dd~lsvhIk~- 420 (646)
T KOG0039|consen 356 NVKIAKVVLLPSD-----VLELIMSKPPGFKYKPGQYIFVNCPSLS----KLEWHPFTITSAP-----EDDFLSVHIKA- 420 (646)
T ss_pred CceEEEEEEcCCC-----eEEEEEeCCCCCCCCCCCEEEEECcccc----ccccCCceeecCC-----CCCEEEEEEEe-
Confidence 3566777777766 9999999999999999999999998876 6799999999999 56899999998
Q ss_pred eEecCCCceecCccchhhhc-CC------------CCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHH
Q 043022 166 VYTNENGEIVKGVCSNFLCD-LK------------PGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMF 232 (361)
Q Consensus 166 ~~~~~~~~~~~G~~S~~L~~-l~------------~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~ 232 (361)
.|.+|+.|.+ +. ..-++.|+||||..... -...+.++|||+|+|++|+.+++++++
T Consensus 421 ----------~g~wT~~L~~~~~~~~~~~~~~~~~~~~~i~IdGPYG~~s~d-~~~~e~~vLV~~GiGvtPf~sil~~l~ 489 (646)
T KOG0039|consen 421 ----------LGDWTEKLRNAFSEVSQPPESDKSYPFPKILIDGPYGAPSQD-VFKYEVLVLVGGGIGVTPFASILKDLL 489 (646)
T ss_pred ----------cCcHHHHHHHHHhhhcccccccccccCceEEEECCCCCCchh-hhhcceEEEEccCcccCccHHHHHHHH
Confidence 5889988876 33 14479999999986532 245678899999999999999999988
Q ss_pred hhccccc-----------ccCCeEEEEEeccCCccc-ccHHHHHHHHHhCC-CceEEEEEecCC---ccc----------
Q 043022 233 FEKHEDY-----------KFNGLAWLFLGVPTSSSL-LYKEEFEKMKEKAP-ENFRLDFAVSRE---QKN---------- 286 (361)
Q Consensus 233 ~~~~~~~-----------~~~~~i~L~~g~r~~~d~-~~~~el~~l~~~~~-~~~~~~~~~s~~---~~~---------- 286 (361)
.+.+.+. ...+++.++|.+|...++ +|.+.+.++..... +-.+++..++.. .+.
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~sf~wf~~~l~~v~~~~~~~~~e~~~~~t~~~~~~d~~~~~~~~~~~ 569 (646)
T KOG0039|consen 490 NKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQRSFEWFKGLLTEVEEYDSSGVIELHNYVTSSYEEGDARSALIQMVQK 569 (646)
T ss_pred hhccCCCCcCccccccccceecceeEEEEeccccchHHHHHHHHHHHHHHhcCCchhheehhHhHhhhhhhhHHHHHHHh
Confidence 7543321 234678999998888765 67777777663311 124455444421 000
Q ss_pred ---CCCCeeE------ecchHHHhHHHHHHHhcc--CC--eEEEEECCcchHHHHHHHHHHHHHc
Q 043022 287 ---EKGEKMY------IQTRMAEYANELWELLKK--DN--TYVYMCGLRGMEKGIDDIMVSLAAN 338 (361)
Q Consensus 287 ---~~g~~~~------v~~~l~~~~~~~~~~l~~--~~--~~vyvCGp~~m~~~v~~~L~~~g~~ 338 (361)
..+.+.. ..+.-+.+.+++++.+.. ++ ..|++|||+.|++.+++.+.+....
T Consensus 570 ~~~~~~~~di~~g~~~~~~~gRPn~~~~~~~~~~~~~~~~vgVf~CGp~~l~~~~~~~~~~~~~~ 634 (646)
T KOG0039|consen 570 LLHAKNGVDIVTGLKVETHFGRPNWKEVFKEIAKSHPNVRVGVFSCGPPGLVKELRKLCNDFSSS 634 (646)
T ss_pred hcccccCccccccceeeeeCCCCCHHHHHHHHHhhCCCceEEEEEeCCHHHHHHHHHHHHhcccc
Confidence 0001011 111113333344433321 22 6899999999999999999887665
No 84
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=99.71 E-value=4.8e-17 Score=126.73 Aligned_cols=95 Identities=29% Similarity=0.387 Sum_probs=81.5
Q ss_pred eEEEEeEeeecCCCCCCceEEEEeeCCC---ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEE
Q 043022 86 IGRCLLNTKITGDDAPGETWHMVFSTEG---EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCV 162 (361)
Q Consensus 86 ~~~v~~~~~~~~~~~~~~~~~l~l~~~~---~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V 162 (361)
.++|++++.++++ ++.++|+.+. .+.|.||||+.|.++..+ ....|+|||+|.+. +.+.++|+|
T Consensus 1 ~~~v~~~~~~s~~-----~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~~~----~~~~R~yS~~s~~~----~~~~~~~~i 67 (99)
T PF00970_consen 1 KAKVVEIEELSPD-----VKIFRFKLPDPDQKLDFKPGQFVSVRVPING----KQVSRPYSPASSPD----DKGYLEFAI 67 (99)
T ss_dssp EEEEEEEEEESSS-----EEEEEEEESSTTTT-SSTTT-EEEEEEEETT----EEEEEEEEBCSSTT----SSSEEEEEE
T ss_pred CEEEEEEEEeCCC-----eEEEEEEECCCCcccccCcceEEEEEEccCC----cceecceeEeeecC----CCCcEEEEE
Confidence 4789999999999 9999999874 356999999999987321 23689999999996 678999999
Q ss_pred EEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCc
Q 043022 163 KRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEM 202 (361)
Q Consensus 163 ~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~ 202 (361)
|+.+ +|.+|+||+++++||.|.|+||+|+|.
T Consensus 68 k~~~---------~G~~S~~L~~l~~Gd~v~i~gP~G~f~ 98 (99)
T PF00970_consen 68 KRYP---------NGRVSRYLHQLKPGDEVEIRGPYGNFT 98 (99)
T ss_dssp EECT---------TSHHHHHHHTSCTTSEEEEEEEESSEE
T ss_pred Eecc---------CCHHHHHHHhCCCCCEEEEEEcccccC
Confidence 9986 899999999999999999999999864
No 85
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.63 E-value=1.3e-14 Score=150.29 Aligned_cols=126 Identities=17% Similarity=0.197 Sum_probs=103.3
Q ss_pred CCCeeEEEEeEeeecCCCCCCceEEEEeeCCCcc-ccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEE
Q 043022 82 KTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEV-PYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSL 160 (361)
Q Consensus 82 ~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l-~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~ 160 (361)
...+.++|++++.++++ ++.+++..|... .++||||+.|..++.+. .....+|++||++... +.+.++|
T Consensus 788 ~~~l~~~Vv~~~~lap~-----i~~L~l~aP~iA~~~kPGQFVmL~~~~~g~-~~l~~p~P~SI~~vD~----e~g~It~ 857 (1028)
T PRK06567 788 DYLLTSRVNKINILDDK-----TFELIIHSPLAAKNFKFGQFFRLQNYSEDA-AKLIEPVALSPIDIDV----EKGLISF 857 (1028)
T ss_pred hhhhceEEEEEEEecCC-----EEEEEEeCcchhhcCCCCceEEEEeCCCCC-ccccCceeEEeeccCC----CCCEEEE
Confidence 34678999999999999 999999998743 58999999999753210 1112567999999875 6789999
Q ss_pred EEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHh
Q 043022 161 CVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFF 233 (361)
Q Consensus 161 ~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~ 233 (361)
+++.+ |..|..|+.+++||.|.+.||+|+.|..+. .+++++||||+|+|| +++++..
T Consensus 858 i~rvV-----------GkgT~~Ls~l~~Gd~v~v~GPLG~pF~i~~--~k~vLLVgGGVGiAp---Lak~Lk~ 914 (1028)
T PRK06567 858 IVFEV-----------GKSTSLCKTLSENEKVVLMGPTGSPLEIPQ--NKKIVIVDFEVGNIG---LLKVLKE 914 (1028)
T ss_pred EEEEE-----------ChHHHHHhcCCCCCEEEEEcccCCCCCCCC--CCeEEEEEccccHHH---HHHHHHH
Confidence 99986 899999999999999999999999887753 368999999999997 4566554
No 86
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.50 E-value=8e-14 Score=117.67 Aligned_cols=122 Identities=18% Similarity=0.319 Sum_probs=74.0
Q ss_pred CcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCccc-ccHHHHHHHHHhCC-CceEEEEEecCCcccC
Q 043022 210 ATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSL-LYKEEFEKMKEKAP-ENFRLDFAVSREQKNE 287 (361)
Q Consensus 210 ~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~-~~~~el~~l~~~~~-~~~~~~~~~s~~~~~~ 287 (361)
..++|||||+||+|+++++++++...........++.|+|.+|+.+++ +|.++|.++..... .++++.++++++....
T Consensus 2 ~~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~~~~~ 81 (156)
T PF08030_consen 2 DNVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNVEVHIYVTRESSAP 81 (156)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSEEEEEEETT-----
T ss_pred CEEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccceEEEEEcCCcccc
Confidence 579999999999999999999877654222335789999999999876 67766665543322 2799999988764321
Q ss_pred C----------C------C---------e-eEecchHHHhHHHHHHHh----ccCCeEEEEECCcchHHHHHHHH
Q 043022 288 K----------G------E---------K-MYIQTRMAEYANELWELL----KKDNTYVYMCGLRGMEKGIDDIM 332 (361)
Q Consensus 288 ~----------g------~---------~-~~v~~~l~~~~~~~~~~l----~~~~~~vyvCGp~~m~~~v~~~L 332 (361)
. + . + ..+..- +..++++.... ..+...|++|||++|+++++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~d~~s~~~~~~~~~g-RP~~~~~~~~~~~~~~~~~~~V~~CGP~~m~~~vr~~v 155 (156)
T PF08030_consen 82 SNSDSSDSSSDGENSSSESSNVDSVSPTSNISVHYG-RPDLDEILSEVASQQSSGRVAVFVCGPPSMVDDVRNAV 155 (156)
T ss_dssp --------------------------------EEES----HHHHHHHHHHHSTT-EEEEEEES-HHHHHHHHHHH
T ss_pred cchhhhhcccccccccccccCCcccCCCcccceecC-CCCHHHHHHHHHHhCCCCcEEEEEcCcHHHHHHHHHHh
Confidence 0 0 0 0 001111 22233333222 23577899999999999999865
No 87
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=99.13 E-value=2.7e-13 Score=120.96 Aligned_cols=133 Identities=21% Similarity=0.259 Sum_probs=80.7
Q ss_pred ccceecCCCcccccccceeeeeeec--cceeEEEeeecccCccchhhh--cccccccccccccccCCCCeeEEEEeEeee
Q 043022 20 TRTSIISPDRITFRKVPFYYKDVST--GGRVVSVRAQVTTEAPAKVEK--ESKKMEEGVIVNKFKPKTPYIGRCLLNTKI 95 (361)
Q Consensus 20 ~~~~~p~p~~~t~~~~~~~y~di~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 95 (361)
.....|+|.|+|++++|++|+||++ +++++..|+.++++.+.+... +......+.. ..|..... .+++++-..
T Consensus 83 ~~~~~~~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~-~~~~~~~~--~t~~dil~~ 159 (219)
T PF00667_consen 83 NSVKPPFPSPITLRDLLTHYLDITSPPSRSFLRALAEFATDEEEKERLLELASDEGKDDY-KDYIWRER--RTLLDILED 159 (219)
T ss_dssp SSCCSSSSSSEEHHHHHHHTB-TSSB--HHHHHHHHCTBSSHHHHHHHHHCTSSHHHHHH-HHHTTTTT--HCHHHHHHH
T ss_pred cccccccccceeeeeeeeeeeecccccccceeeeeeecCCCHHHHHHHHHhcchhhhhhh-hhhhhccc--CcHHHHHhh
Confidence 3456789999999999999999999 999999999999998877742 2222111111 11211000 111111111
Q ss_pred cCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCcee
Q 043022 96 TGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIV 175 (361)
Q Consensus 96 ~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~ 175 (361)
-+ ......++++.+.. ++++|+|||||+|.. +++.++|+|.++.|.+..++.+
T Consensus 160 fp----------------s~~~pl~~ll~~lp--------~l~PR~YSIsSS~~~---~p~~v~ltv~vv~~~~~~g~~r 212 (219)
T PF00667_consen 160 FP----------------SCKPPLEELLELLP--------PLQPRYYSISSSPLV---HPNKVHLTVSVVEYPTPRGRIR 212 (219)
T ss_dssp ST----------------TBTC-HHHHHHHS---------B---EEEEB-S-TTT---STTEEEEEEEE-EEECTTSSEE
T ss_pred Cc----------------ccCCCHHHhhhhCC--------CCCCcceeecccccC---CCCEEEEEEEEEEEecCCCCee
Confidence 11 01111223333332 568999999999976 7899999999999988999999
Q ss_pred cCccchh
Q 043022 176 KGVCSNF 182 (361)
Q Consensus 176 ~G~~S~~ 182 (361)
.|.||+|
T Consensus 213 ~G~cS~y 219 (219)
T PF00667_consen 213 RGVCSSY 219 (219)
T ss_dssp E-HHHHH
T ss_pred EeeCCCC
Confidence 9999987
No 88
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.12 E-value=6.4e-12 Score=98.77 Aligned_cols=91 Identities=22% Similarity=0.296 Sum_probs=6.3
Q ss_pred EEEEeEeeecCCCCCCceEEEEeeCCCc-cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEe
Q 043022 87 GRCLLNTKITGDDAPGETWHMVFSTEGE-VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRL 165 (361)
Q Consensus 87 ~~v~~~~~~~~~~~~~~~~~l~l~~~~~-l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~ 165 (361)
.++.+++.+..+ ++++++..+.. +.|+||||+.|.++..... .++.|||||+|.| +++.+.|+||.
T Consensus 4 ~~~~~v~~~~~~-----~v~i~i~~~~~~~~~~pGq~v~l~~p~~s~~--~~q~HPFTIas~~-----~~~~i~l~ik~- 70 (105)
T PF08022_consen 4 VRIASVELLPDD-----VVEITIPKPSSPFKWKPGQYVFLSFPSISKW--FWQWHPFTIASSP-----EDNSITLIIKA- 70 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEEEcCCC-----EEEEEEECCCCCCCCCCceEEEEEEcCcCcC--cccccccEeeccC-----CCCEEEEEEEe-
Confidence 345566666666 89999999886 8999999999999876511 1389999999998 57899999998
Q ss_pred eEecCCCceecCccchhhhc-CC-------CCCEEEEEccCCC
Q 043022 166 VYTNENGEIVKGVCSNFLCD-LK-------PGAEVKITGPVGK 200 (361)
Q Consensus 166 ~~~~~~~~~~~G~~S~~L~~-l~-------~G~~v~i~gP~G~ 200 (361)
.|.+|..|.+ +. .+-++.|+||||.
T Consensus 71 ----------~g~~T~~L~~~~~~~~~~~~~~~~v~idGPYG~ 103 (105)
T PF08022_consen 71 ----------RGGWTKRLYEHLSESPSKQGNRLRVFIDGPYGA 103 (105)
T ss_dssp ------------------------------------TTSTTSH
T ss_pred ----------CCCchHHHHHHHhhhcccCCCceEEEEECCCCC
Confidence 4778888876 32 2346889999995
No 89
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=99.11 E-value=1.6e-08 Score=90.89 Aligned_cols=222 Identities=15% Similarity=0.235 Sum_probs=151.1
Q ss_pred CCCeeEEEEeEeeecCCCCCCceEEEEeeCCCcccc---CCCc-EEEEecCCCCCCC----------------CCCCcee
Q 043022 82 KTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPY---KEGQ-SIGVIADGVDKNA----------------KPHKLRL 141 (361)
Q Consensus 82 ~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~---~pGQ-~v~l~~~~~~~~~----------------~~~~~R~ 141 (361)
.....++|+.++++++. +.+++|..+....| .+|+ |+.|.++...... .....|.
T Consensus 15 ~~~~~~~V~~~~~lsP~-----m~Rv~~~g~~l~~f~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~ 89 (265)
T COG2375 15 PRLHEATVTRVTQLSPH-----MVRVVLGGEGLAGFASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRT 89 (265)
T ss_pred ccceEEEEEEEEecCCC-----eEEEEEecccccccccccCCCceeEEEecCccCCCCCCcccccccccCccccCCCccc
Confidence 45788999999999999 99999999875443 5554 9999987655332 1135899
Q ss_pred cccccCCCCCCCCCcEEEEEEEEe-eEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCc
Q 043022 142 YSIASSALGDFGDSKTVSLCVKRL-VYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTG 220 (361)
Q Consensus 142 ySias~p~~~~~~~~~l~~~V~~~-~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtG 220 (361)
|||.+... +.+++.|-+..+ + .|..|.|-.+.++||+|.|.||.|..+.. .....++|||-=|+
T Consensus 90 YTiR~~d~----~~~e~~vDfVlH~~---------~gpas~WA~~a~~GD~l~i~GP~g~~~p~--~~~~~~lLigDetA 154 (265)
T COG2375 90 YTIRAVDA----AAGELDVDFVLHGE---------GGPASRWARTAQPGDTLTIMGPRGSLVPP--EAADWYLLIGDETA 154 (265)
T ss_pred ceeeeecc----cccEEEEEEEEcCC---------CCcchhhHhhCCCCCEEEEeCCCCCCCCC--CCcceEEEeccccc
Confidence 99987644 456666655554 3 79999999999999999999999985443 45578999999999
Q ss_pred hhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHH
Q 043022 221 IAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAE 300 (361)
Q Consensus 221 iaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~ 300 (361)
+-.|.++|+.+-.. .+...|.-+.+.+|. + .+ .++..+++.-...+... -...+..
T Consensus 155 lPAIa~iLE~lp~~--------~~~~a~lev~d~ad~---~---~l--~~~~~l~~~Wl~r~~~~--------~~~ll~~ 210 (265)
T COG2375 155 LPAIARILETLPAD--------TPAEAFLEVDDAADR---D---EL--PSPDDLELEWLARDDAP--------TEQLLAA 210 (265)
T ss_pred hHHHHHHHHhCCCC--------CceEEEEEeCChHHh---h---cc--CCCCceeEEEecCCCcc--------chHHHHH
Confidence 99999999987532 344667777776653 1 12 12236676654333211 1112222
Q ss_pred hHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHH-HHccC-CCHHHHHHH
Q 043022 301 YANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSL-AANDG-IDWLDYKKQ 349 (361)
Q Consensus 301 ~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~-g~~~~-~~~~~~~~~ 349 (361)
...+. . +..++..+|+.|-..+++++++.|++- |.... +...-|+++
T Consensus 211 a~~~~-~-~P~~~~~vwiagE~~~v~~~Rk~L~~e~g~dk~~i~a~gYW~~ 259 (265)
T COG2375 211 ALAQA-A-LPAGDYYVWIAGEASAVKAIRKFLRNERGFDKSRVRAIGYWRR 259 (265)
T ss_pred HHhcc-c-CCCCceEEEEeccHHHHHHHHHHHhhhcCCCHHHhhhhhhhhc
Confidence 22211 1 221358999999999999999999884 33322 444445543
No 90
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=98.54 E-value=2.4e-07 Score=74.05 Aligned_cols=96 Identities=17% Similarity=0.250 Sum_probs=61.6
Q ss_pred EEEeEeeecCCCCCCceEEEEeeCCCc--cc-cCCCcEEEEecCCCCCCCC-----------------CCCceecccccC
Q 043022 88 RCLLNTKITGDDAPGETWHMVFSTEGE--VP-YKEGQSIGVIADGVDKNAK-----------------PHKLRLYSIASS 147 (361)
Q Consensus 88 ~v~~~~~~~~~~~~~~~~~l~l~~~~~--l~-~~pGQ~v~l~~~~~~~~~~-----------------~~~~R~ySias~ 147 (361)
+|++++.+++. +.+++|..++. +. ..+|||+.|.++....... ....|.||+.+.
T Consensus 1 ~V~~~~~ltP~-----~~Rv~l~g~~l~~~~~~~~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~ 75 (117)
T PF08021_consen 1 TVVRVERLTPH-----MRRVTLGGEDLAGFPSWGPDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRF 75 (117)
T ss_dssp EEEEEEEEETT-----EEEEEEESGGGTT--S--TT-EEEEEE--TTS----------------------EEEEEE--EE
T ss_pred CEEEEEECCCC-----EEEEEEECCCcccCccCCCCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeE
Confidence 58899999999 99999998763 33 5799999999886553321 124899999998
Q ss_pred CCCCCCCCcEEEEEEEEeeEecCCCceec-CccchhhhcCCCCCEEEEEccCCCC
Q 043022 148 ALGDFGDSKTVSLCVKRLVYTNENGEIVK-GVCSNFLCDLKPGAEVKITGPVGKE 201 (361)
Q Consensus 148 p~~~~~~~~~l~~~V~~~~~~~~~~~~~~-G~~S~~L~~l~~G~~v~i~gP~G~~ 201 (361)
.. +.+++.|-+..+. . |..+.|....++||.|.|.||.|.|
T Consensus 76 d~----~~~~l~iDfv~Hg---------~~Gpas~WA~~A~pGd~v~v~gP~g~~ 117 (117)
T PF08021_consen 76 DP----ETGELDIDFVLHG---------DEGPASRWARSARPGDRVGVTGPRGSF 117 (117)
T ss_dssp ET----T--EEEEEEE--S---------S--HHHHHHHH--TT-EEEEEEEE---
T ss_pred cC----CCCEEEEEEEECC---------CCCchHHHHhhCCCCCEEEEeCCCCCC
Confidence 65 5678888777664 3 8899999999999999999999864
No 91
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=95.10 E-value=0.058 Score=48.01 Aligned_cols=52 Identities=21% Similarity=0.426 Sum_probs=38.9
Q ss_pred ccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCC
Q 043022 79 FKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGV 130 (361)
Q Consensus 79 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~ 130 (361)
|....++.++|+++++++......++++++|+.+. .+.|+||+++.|.+++.
T Consensus 3 ~~~~~p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~~l~Y~pGD~l~V~P~N~ 55 (219)
T PF00667_consen 3 YSRKNPFPATVLENRRLTSPGSDRSTRHIELDLSDSGLSYQPGDHLGVYPPND 55 (219)
T ss_dssp HBTTB-EEEEEEEEEE-SSTTSSSEEEEEEEE-TTSTG---TT-EEEEE-SSE
T ss_pred cCCCCCEEEEEEeEEEcCCCCCCceEEEEEEEeCCCCCcccCCCEEEEEccCC
Confidence 45677999999999999998888999999999865 79999999999998764
No 92
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=88.98 E-value=1.1 Score=46.13 Aligned_cols=53 Identities=26% Similarity=0.508 Sum_probs=45.5
Q ss_pred cccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCC
Q 043022 78 KFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGV 130 (361)
Q Consensus 78 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~ 130 (361)
.|.+..++.++|+.+.+++...+..++++++|+.+. .+.|+||+++.|.+.+.
T Consensus 228 ~~~~~~p~~a~v~~n~~lt~~~~~k~~~hiel~l~~~~~~Y~~GD~l~V~P~N~ 281 (597)
T TIGR01931 228 VYSKQNPFRAEVLENQKITGRNSKKDVRHIEIDLEGSGLHYEPGDALGVWYKND 281 (597)
T ss_pred CccCCCCeEEEEEeeEecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEeCCC
Confidence 355667899999999999988777889999999754 68899999999998764
No 93
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=85.13 E-value=2.3 Score=41.70 Aligned_cols=47 Identities=15% Similarity=0.413 Sum_probs=40.9
Q ss_pred CCeeEEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCC
Q 043022 83 TPYIGRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGV 130 (361)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~ 130 (361)
.++.++|++..+++.. ...++++++|+.+. .+.|+||+++.|.+.+.
T Consensus 4 ~~~~~~v~~~~~lt~~-~~~~~~~~~ld~~~~~~~Y~~GD~l~I~p~N~ 51 (416)
T cd06204 4 NPFLAPVAVSRELFTG-SDRSCLHIEFDISGSGIRYQTGDHLAVWPTNP 51 (416)
T ss_pred CCeEeEEEEEeeccCC-CCccEEEEEEeCCCCCCcccCCCEEEEEcCCC
Confidence 4778999999999987 66789999999865 78899999999998764
No 94
>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=83.28 E-value=11 Score=29.85 Aligned_cols=104 Identities=11% Similarity=0.199 Sum_probs=59.2
Q ss_pred CcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCC
Q 043022 210 ATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKG 289 (361)
Q Consensus 210 ~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g 289 (361)
+.++|+|--|++-.+..+++.+-. ..+..++.-+.+.+|... |.. .. +++++.........
T Consensus 2 ~~~ll~gDeTalPAi~~iLe~lp~--------~~~~~v~iev~~~~d~~~---l~~----~~-~~~v~wv~r~~~~~--- 62 (119)
T PF04954_consen 2 DRYLLVGDETALPAIARILEALPA--------DAPGTVFIEVPDEADRQP---LPA----PA-GVEVTWVPRDGPAA--- 62 (119)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHS-T--------T-EEEEEEEESSGGG--------------T-EEEEEEEE-SS--T---
T ss_pred ceEEEEeccccHHHHHHHHHhCCC--------CCeEEEEEEECChHhccc---CCC----CC-CCEEEEEeCCCCCc---
Confidence 457999999999999999998731 246677777777665332 221 22 77877665443200
Q ss_pred CeeEecchHHHhHHHHHHHh-ccCCeEEEEECCcchHHHHHHHHH-HHHHcc
Q 043022 290 EKMYIQTRMAEYANELWELL-KKDNTYVYMCGLRGMEKGIDDIMV-SLAAND 339 (361)
Q Consensus 290 ~~~~v~~~l~~~~~~~~~~l-~~~~~~vyvCGp~~m~~~v~~~L~-~~g~~~ 339 (361)
.. ..+.+ .+.... ..+...++++|-..+++++++.|. +.|...
T Consensus 63 ~~----~~l~~---al~~~~~~~~~~~vW~AgE~~~~r~lR~~l~~~~g~~~ 107 (119)
T PF04954_consen 63 QG----SALAD---ALRDLPLPAGDGYVWVAGEASAVRALRRHLREERGLPR 107 (119)
T ss_dssp T-----HHHHH---HHTTS---SS-EEEEEEEEHHHHHHHHHHHHHH----G
T ss_pred hH----HHHHH---HHHHhhccCCCeEEEEEecHHHHHHHHHHHHHhhCCCH
Confidence 11 11111 111111 126889999999999999999998 445543
No 95
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=79.42 E-value=3.4 Score=40.02 Aligned_cols=44 Identities=14% Similarity=0.273 Sum_probs=36.8
Q ss_pred EEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCC
Q 043022 88 RCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVD 131 (361)
Q Consensus 88 ~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~ 131 (361)
+|+.+++++......++++++|+.+..+.|+||+++.|.+.+..
T Consensus 1 ~v~~~~~lt~~~~~~~~~~~~~~~~~~~~y~~GD~l~v~P~N~~ 44 (384)
T cd06206 1 TVVENRELTAPGVGPSKRHLELRLPDGMTYRAGDYLAVLPRNPP 44 (384)
T ss_pred CeeeEEEcCCCCCCccEEEEEEECCCCCccCCCCEEEEECCCCH
Confidence 36677888877777789999999877889999999999987653
No 96
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=76.90 E-value=4.1 Score=39.12 Aligned_cols=43 Identities=30% Similarity=0.495 Sum_probs=35.0
Q ss_pred EEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCCC
Q 043022 89 CLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGVD 131 (361)
Q Consensus 89 v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~~ 131 (361)
|+.+.++++.....++++++|+.+. .+.|+||+++.|.+.+..
T Consensus 2 v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~ 45 (360)
T cd06199 2 VLENRLLTGPGSEKETRHIELDLEGSGLSYEPGDALGVYPTNDP 45 (360)
T ss_pred cceeEeCCCCCCCccEEEEEEeCCCCCCcccCCCEEEEEcCCCH
Confidence 5566777777666779999999865 688999999999987753
No 97
>PF00677 Lum_binding: Lumazine binding domain; InterPro: IPR001783 The following proteins have been shown [, ] to be structurally and evolutionary related: Riboflavin synthase alpha chain (2.5.1.9 from EC) (RS-alpha) (gene ribC in Escherichia coli, ribB in Bacillus subtilis and Photobacterium leiognathi, RIB5 in yeast. This enzyme synthesises riboflavin from two moles of 6,7- dimethyl-8-(1'-D-ribityl)lumazine (Lum), a pteridine-derivative. Photobacterium phosphoreum lumazine protein (LumP) (gene luxL). LumP is a protein that modulates the colour of the bioluminescence emission of bacterial luciferase. In the presence of LumP, light emission is shifted to higher energy values (shorter wavelength). LumP binds non-covalently to 6,7-dimethyl-8-(1'-D-ribityl)lumazine. Vibrio fischeri yellow fluorescent protein (YFP) (gene luxY). Like LumP, YFP modulates light emission but towards a longer wavelength. YFP binds non-covalently to FMN. These proteins seem to have evolved from the duplication of a domain of about 100 residues. In its C-terminal section, this domain contains a conserved motif [KR]-V-N-[LI]-E which has been proposed to be the binding site for lumazine (Lum) and some of its derivatives. RS-alpha which binds two molecules of Lum has two perfect copies of this motif, while LumP which binds one molecule of Lum, has a Glu instead of Lys/Arg in the first position of the second copy of the motif. Similarly, YFP, which binds to one molecule of FMN, also seems to have a potentially dysfunctional binding site by substitution of Gly for Glu in the last position of the first copy of the motif.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process; PDB: 3DDY_A 1KZL_A 3A3G_B 3A35_B 3A3B_B 1I8D_C 1PKV_B 1HZE_B 1I18_B.
Probab=74.20 E-value=13 Score=27.66 Aligned_cols=76 Identities=18% Similarity=0.159 Sum_probs=50.3
Q ss_pred eeEEEEeEeeecCCCCCCceEEEEeeCC-Ccc-ccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEE
Q 043022 85 YIGRCLLNTKITGDDAPGETWHMVFSTE-GEV-PYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCV 162 (361)
Q Consensus 85 ~~~~v~~~~~~~~~~~~~~~~~l~l~~~-~~l-~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V 162 (361)
-.++|.+++.... -+++++..| ..+ .+..|+++.+. +. ..|+.+.. .+.++|.+
T Consensus 6 ~~g~I~~i~~~~~------~~~~~i~~~~~~~~~~~~g~SIavn--Gv----------cLTV~~~~------~~~f~~~l 61 (85)
T PF00677_consen 6 GTGKIISIEKNGD------SQRLRIEIPDKILSDLKIGGSIAVN--GV----------CLTVTDIN------EDWFEVDL 61 (85)
T ss_dssp EEEEEEEEEEESS------EEEEEEEESTGGGGTG-TTSEEEET--TE----------EEEEEEEE------TTEEEEEE
T ss_pred EEEEEEEEEECCC------CEEEEEEcCHHHHhhCccCcEEEEC--Ce----------eeEEEEec------CCEEEEec
Confidence 4577888887755 689999988 455 48999877765 22 57777764 46777776
Q ss_pred EEeeEecCCCceecCccchhhhcCCCCCEEEEE
Q 043022 163 KRLVYTNENGEIVKGVCSNFLCDLKPGAEVKIT 195 (361)
Q Consensus 163 ~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~ 195 (361)
-.. -.....|..+++|++|.++
T Consensus 62 ~~e-----------Tl~~T~l~~~~~G~~VNlE 83 (85)
T PF00677_consen 62 IPE-----------TLRRTTLGNLKVGDRVNLE 83 (85)
T ss_dssp EHH-----------HHHCSSGGG--TTSEEEEE
T ss_pred hHH-----------HhhhchhccCCCCCEEEEe
Confidence 542 2234456779999999986
No 98
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=71.78 E-value=5.8 Score=38.41 Aligned_cols=43 Identities=23% Similarity=0.449 Sum_probs=34.5
Q ss_pred EEeEeeecCCCCCCceEEEEeeCC-CccccCCCcEEEEecCCCC
Q 043022 89 CLLNTKITGDDAPGETWHMVFSTE-GEVPYKEGQSIGVIADGVD 131 (361)
Q Consensus 89 v~~~~~~~~~~~~~~~~~l~l~~~-~~l~~~pGQ~v~l~~~~~~ 131 (361)
|+++..+++.....++++++|+.+ ..+.|+||+++.|.+.+..
T Consensus 2 v~~~~~lt~~~~~~~~~hl~l~~~~~~~~y~~GD~l~v~p~N~~ 45 (382)
T cd06207 2 VTENKRLTPADYDRSTRHIEFDLGGSGLSYETGDNLGIYPENSD 45 (382)
T ss_pred cceeeecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEcCCCH
Confidence 456667777766777999999984 5788999999999987753
No 99
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=66.68 E-value=9.1 Score=37.41 Aligned_cols=43 Identities=16% Similarity=0.378 Sum_probs=34.7
Q ss_pred EEeEeeecCCCCCCceEEEEeeCCC--ccccCCCcEEEEecCCCC
Q 043022 89 CLLNTKITGDDAPGETWHMVFSTEG--EVPYKEGQSIGVIADGVD 131 (361)
Q Consensus 89 v~~~~~~~~~~~~~~~~~l~l~~~~--~l~~~pGQ~v~l~~~~~~ 131 (361)
|+++..++...+..++++++|+... .+.|+||+++.|.+.+..
T Consensus 2 ~~~~~~l~~~~~~~~~~~i~ld~~~~~~~~Y~~GD~l~V~p~N~~ 46 (406)
T cd06202 2 VISRQNLQSPKSSRSTILVKLDTNGAQELHYQPGDHVGIFPANRP 46 (406)
T ss_pred cceeeecCCCCCCceEEEEEEECCCCCCCCCCCCCEEEEEeCCCH
Confidence 5566777776666789999999864 688999999999988753
No 100
>KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only]
Probab=63.18 E-value=65 Score=28.86 Aligned_cols=55 Identities=11% Similarity=0.236 Sum_probs=34.5
Q ss_pred EEEecCC-chhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEE
Q 043022 213 IMLATGT-GIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFA 279 (361)
Q Consensus 213 v~Ia~Gt-GiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~ 279 (361)
+||.||- ||. ++++++++... +--+++..+|+++.- ..|++.+...++ ++++...
T Consensus 6 v~ItGaNRGIG--lgLVk~llk~~-------~i~~iiat~r~~e~a--~~~l~~k~~~d~-rvHii~L 61 (249)
T KOG1611|consen 6 VFITGANRGIG--LGLVKELLKDK-------GIEVIIATARDPEKA--ATELALKSKSDS-RVHIIQL 61 (249)
T ss_pred EEEeccCcchh--HHHHHHHhcCC-------CcEEEEEecCChHHh--hHHHHHhhccCC-ceEEEEE
Confidence 6666643 554 45677766432 455678888888744 667777766666 7776543
No 101
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=61.39 E-value=13 Score=36.12 Aligned_cols=43 Identities=16% Similarity=0.290 Sum_probs=34.1
Q ss_pred EEeEeeecCCCCCCceEEEEeeCC-CccccCCCcEEEEecCCCC
Q 043022 89 CLLNTKITGDDAPGETWHMVFSTE-GEVPYKEGQSIGVIADGVD 131 (361)
Q Consensus 89 v~~~~~~~~~~~~~~~~~l~l~~~-~~l~~~pGQ~v~l~~~~~~ 131 (361)
|.++.++++.....+++++.|+.. ..+.|+||+++.|.+.+..
T Consensus 2 v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~V~p~N~~ 45 (398)
T cd06203 2 ISSAKKLTEGDDVKTVVDLTLDLSPTGFDYQPGDTIGILPPNTA 45 (398)
T ss_pred cccceEECCCCCCceEEEEEEecCCCCCcCCCCCEEEEeCCCCH
Confidence 456667787777778999999973 3688999999999987653
No 102
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=59.85 E-value=12 Score=36.91 Aligned_cols=52 Identities=13% Similarity=0.274 Sum_probs=44.5
Q ss_pred cCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCCC
Q 043022 80 KPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGVD 131 (361)
Q Consensus 80 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~~ 131 (361)
.|...++++++.+++++...-.-+++++.|+.+. ...|.||+-+.|.+.+.+
T Consensus 192 ~~~~~~~~k~~~N~rlT~~~HfQDVR~~~F~i~~s~~~~epGDvl~l~P~N~d 244 (574)
T KOG1159|consen 192 EPQGQIPAKLVENRRLTSADHFQDVRLFEFDIPDSYEEFEPGDVLSLLPSNSD 244 (574)
T ss_pred ccccccccchhcceeecCcchhheeeEEEEecCCccccccCCCEEEEecCCch
Confidence 4556667999999999998777889999999987 678999999999987654
No 103
>PRK00036 primosomal replication protein N; Reviewed
Probab=56.54 E-value=39 Score=26.37 Aligned_cols=53 Identities=19% Similarity=0.226 Sum_probs=37.6
Q ss_pred ceecccccCCCC-----------CCCCCcEEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCC
Q 043022 139 LRLYSIASSALG-----------DFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGK 200 (361)
Q Consensus 139 ~R~ySias~p~~-----------~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~ 200 (361)
.+.||+|..|.- +.+-.+.+++-|..+- -|.....+.++..|..+.++|....
T Consensus 15 ~lryTPAGIp~~~~~LeH~S~q~EAG~~Rqv~~~i~ava---------~G~~a~~~~~l~~Gs~v~v~GFLa~ 78 (107)
T PRK00036 15 AMRHTPAGLPALELLLVHESEVVEAGHPRRVELTISAVA---------LGDLALLLADTPLGTEMQVQGFLAP 78 (107)
T ss_pred ccccCCCCCceEEEEEEEeEEeEeCCCcceEEEEEEEEE---------EhhHHHHhcccCCCCEEEEEEEEEE
Confidence 456777776642 1124566677776665 6888888888999999999997553
No 104
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=54.02 E-value=99 Score=28.69 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=28.7
Q ss_pred CCcEEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCC
Q 043022 154 DSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGK 200 (361)
Q Consensus 154 ~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~ 200 (361)
+.+.++-+|+. .|.-|.||+.|+.||+|.|--.-|.
T Consensus 260 NAG~VhaYi~v-----------Pg~kTkYLaEL~aGDeV~iVD~dGr 295 (376)
T COG1465 260 NAGAVHAYIRV-----------PGGKTKYLAELKAGDEVLIVDFDGR 295 (376)
T ss_pred cccceeEEEEc-----------CCCceEEhhhhcCCCeEEEEecCCc
Confidence 34567888876 4888999999999999998655554
No 105
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=52.21 E-value=93 Score=29.72 Aligned_cols=107 Identities=11% Similarity=0.128 Sum_probs=62.0
Q ss_pred CCCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEE---------EEecCCCCCCCCCCCceecccccCCCCCC
Q 043022 82 KTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSI---------GVIADGVDKNAKPHKLRLYSIASSALGDF 152 (361)
Q Consensus 82 ~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v---------~l~~~~~~~~~~~~~~R~ySias~p~~~~ 152 (361)
.....++|.+++.+.-. -++.++.... +.||+-+ +|... .........+|||-+.-
T Consensus 175 l~L~~a~Vt~V~~vGmG------dRVCVDtcsl--l~~gEGmLVGs~s~glfLVhs-Et~~~pYva~RPFRVNA------ 239 (354)
T PF01959_consen 175 LELVPATVTRVEPVGMG------DRVCVDTCSL--LRPGEGMLVGSSSSGLFLVHS-ETHESPYVASRPFRVNA------ 239 (354)
T ss_pred ceeEEEEEEEEEEcCCc------cEEEEEcccc--CCCCCeEEEcccCceEEEEEe-ccccCCCCCCCCceEec------
Confidence 44567888888888654 3455554332 3344322 22211 11111123566666544
Q ss_pred CCCcEEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCC----CCCCCcEEEEec
Q 043022 153 GDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMP----RDPNATVIMLAT 217 (361)
Q Consensus 153 ~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~----~~~~~~iv~Ia~ 217 (361)
+.++-+|.. .|.-|+||..|+.|++|.+-...|+.-... +=..+|+++|=+
T Consensus 240 ---GaVHaYv~~-----------pg~kT~YLSEL~sG~~VlvVd~~G~tR~~~VGRvKIE~RPLllIeA 294 (354)
T PF01959_consen 240 ---GAVHAYVLM-----------PGGKTRYLSELRSGDEVLVVDADGRTRTAIVGRVKIERRPLLLIEA 294 (354)
T ss_pred ---CcceeEEEc-----------CCCceeehhhhcCCCEEEEEeCCCCEEEEEeeEEEEeecceEEEEE
Confidence 456666765 478899999999999999988888631110 112468887643
No 106
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=49.52 E-value=23 Score=37.33 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=22.8
Q ss_pred CCeEEEEECCcchHHHHHHHHHHHHH
Q 043022 312 DNTYVYMCGLRGMEKGIDDIMVSLAA 337 (361)
Q Consensus 312 ~~~~vyvCGp~~m~~~v~~~L~~~g~ 337 (361)
.+.-|+||||+.|-++|.+.++....
T Consensus 674 ~~vgvlv~gp~~~~~~va~~~~~~~~ 699 (722)
T PLN02844 674 SDIGVLVCGPETMKESVASMCRLKSQ 699 (722)
T ss_pred CceeEEEeCchHHHHHHHHHHHhccc
Confidence 56789999999999999999887655
No 107
>PLN02292 ferric-chelate reductase
Probab=47.12 E-value=19 Score=37.74 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=24.2
Q ss_pred HHHHhccCCeEEEEECCcchHHHHHHHHHHHH
Q 043022 305 LWELLKKDNTYVYMCGLRGMEKGIDDIMVSLA 336 (361)
Q Consensus 305 ~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g 336 (361)
+....+..+.-|+||||+.|-++|.+.+....
T Consensus 658 i~~~~~~~~vgvlv~gp~~~~~~va~~c~s~~ 689 (702)
T PLN02292 658 LLVGLKGSSVGVLVCGPKKMRQKVAKICSSGL 689 (702)
T ss_pred HHHhcCCCceeEEEECcHHHHHHHHHHHhcCC
Confidence 33334445778999999999999998877654
No 108
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=46.38 E-value=1.4e+02 Score=28.32 Aligned_cols=108 Identities=13% Similarity=0.149 Sum_probs=63.0
Q ss_pred CCCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEE--------ecCCCCCCCCCCCceecccccCCCCCCC
Q 043022 82 KTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGV--------IADGVDKNAKPHKLRLYSIASSALGDFG 153 (361)
Q Consensus 82 ~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l--------~~~~~~~~~~~~~~R~ySias~p~~~~~ 153 (361)
.....++|.+++.+.-. -++.++.... +.+|+-+-+ .+...........+|||-+.-
T Consensus 165 l~L~~a~Vt~V~~vG~G------dRVCVDtcsl--l~~gEGmLVGs~s~glfLVhsEt~~~pYva~RPFRVNA------- 229 (344)
T PRK02290 165 LELVPATVTRVEPVGMG------DRVCVDTCSL--MEEGEGMLVGSSSRGMFLVHAETEENPYVASRPFRVNA------- 229 (344)
T ss_pred ceeEEEEEEEEEEcCCc------cEEEEEcccc--CCCCceEEEcccCCcEEEEecccccCCCccCCCeeEec-------
Confidence 45668899999988765 4555554332 233332211 111111111122556666544
Q ss_pred CCcEEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCC----CCCCCcEEEEec
Q 043022 154 DSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMP----RDPNATVIMLAT 217 (361)
Q Consensus 154 ~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~----~~~~~~iv~Ia~ 217 (361)
+.++-+|.. .|..|.||..|+.|++|.+-...|+.-.-. +=..+|+++|-+
T Consensus 230 --GaVhaYv~~-----------pgg~T~YLsEL~sG~eVlvVd~~G~tR~~~VGRvKIE~RPL~lIeA 284 (344)
T PRK02290 230 --GAVHAYVRV-----------PGDKTRYLSELRSGDEVLVVDADGNTREAIVGRVKIEKRPLLLIEA 284 (344)
T ss_pred --CcceeEEEc-----------CCCcchhhHhhcCCCEEEEEeCCCCEEEEEeeEEEEeeccEEEEEE
Confidence 456667765 488999999999999999988777631110 112378888754
No 109
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=46.30 E-value=1.8e+02 Score=28.39 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=30.9
Q ss_pred CCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCc-cccCCCcEEEEecCC
Q 043022 81 PKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGE-VPYKEGQSIGVIADG 129 (361)
Q Consensus 81 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~-l~~~pGQ~v~l~~~~ 129 (361)
|.+.+.++|..+....+. ...++.+++..+.+ ..++||+|+.+.+..
T Consensus 274 ~~~~~~g~v~~i~p~vd~--~trt~~vrv~l~N~~~~L~pGm~v~v~i~~ 321 (409)
T PRK09783 274 PDKTFTIRKWTLLPSVDA--ATRTLQLRLEVDNADEALKPGMNAWLQLNT 321 (409)
T ss_pred CCCEEEEEEEEEccccCC--CCcEEEEEEEEeCCCCccCCCCEEEEEEec
Confidence 455677777766543332 13467777776653 458999999999863
No 110
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=39.86 E-value=45 Score=31.85 Aligned_cols=24 Identities=8% Similarity=0.182 Sum_probs=20.9
Q ss_pred CcEEEEecCCc--hhhHHHHHHHHHh
Q 043022 210 ATVIMLATGTG--IAPFRGFLWKMFF 233 (361)
Q Consensus 210 ~~iv~Ia~GtG--iaP~~~~l~~~~~ 233 (361)
+.+++.||||| |-|.+++.+++..
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKE 27 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHh
Confidence 35899999998 8899999999875
No 111
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=34.38 E-value=53 Score=31.91 Aligned_cols=50 Identities=26% Similarity=0.357 Sum_probs=34.8
Q ss_pred cEEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchh
Q 043022 156 KTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIA 222 (361)
Q Consensus 156 ~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGia 222 (361)
+.|-++.... .+..+.++.-+.+||+|.|--|+ | +.+.+.+.+||||++-
T Consensus 94 ~eVlVT~GA~----------~ai~~~~~~l~~~GDeVii~eP~---f----d~Y~~~~~maG~tpv~ 143 (420)
T KOG0257|consen 94 DEVLVTAGAN----------EAISSALLGLLNPGDEVIVFEPF---F----DCYIPQVVMAGGTPVF 143 (420)
T ss_pred ccEEEecCch----------HHHHHHHHHHcCCCCEEEEecCc---c----hhhhhHHhhcCCccee
Confidence 4566666553 35555666669999999998873 3 2446678889999874
No 112
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=33.72 E-value=1.1e+02 Score=24.62 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=35.2
Q ss_pred EEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecc
Q 043022 88 RCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYS 143 (361)
Q Consensus 88 ~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~yS 143 (361)
-++++.-.......++++.+.|+.++..++..-|-+++..- |.-++-||
T Consensus 46 Wii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~-------P~HPHiYS 94 (161)
T KOG0427|consen 46 WIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPA-------PLHPHIYS 94 (161)
T ss_pred eEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCC-------CCCCceec
Confidence 34555555555666789999999999999999898777741 44466664
No 113
>PLN02631 ferric-chelate reductase
Probab=33.16 E-value=44 Score=35.15 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=20.6
Q ss_pred CeEEEEECCcchHHHHHHHHHHHH
Q 043022 313 NTYVYMCGLRGMEKGIDDIMVSLA 336 (361)
Q Consensus 313 ~~~vyvCGp~~m~~~v~~~L~~~g 336 (361)
+.-|+||||+.|-++|.+.+....
T Consensus 663 ~vgvlv~gp~~~~~~va~~c~s~~ 686 (699)
T PLN02631 663 DVGVMVCGPRKMRHEVAKICSSGL 686 (699)
T ss_pred ceeEEEECcHHHHHHHHHHHhcCC
Confidence 678999999999999988877654
No 114
>PRK13020 riboflavin synthase subunit alpha; Provisional
Probab=29.76 E-value=2.1e+02 Score=25.20 Aligned_cols=77 Identities=14% Similarity=0.112 Sum_probs=49.9
Q ss_pred eeEEEEeEeeecCCCCCCceEEEEeeCCCc-cc-cCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEE
Q 043022 85 YIGRCLLNTKITGDDAPGETWHMVFSTEGE-VP-YKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCV 162 (361)
Q Consensus 85 ~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~-l~-~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V 162 (361)
-.++|.+++.... .+.++|..|+. .+ +.++.+|.+. +. ..|++... ++.+++.+
T Consensus 105 ~~~~i~~i~~~~~------~~~~~i~~~~~~~~~i~~kgSIaid--Gv----------sLTV~~v~------~~~f~v~l 160 (206)
T PRK13020 105 TTATVVEISDTEE------NYDIRFRVPPEWMKYIFAKGFIGVN--GC----------SLTVGEVD------ESEFEVHL 160 (206)
T ss_pred EEEEEEEEEEcCC------CEEEEEEEChHHhcccccCCEEEEe--eE----------EEEEEeEc------CCEEEEEE
Confidence 3567777776655 58888888765 34 5778877665 22 57777763 45666655
Q ss_pred EEeeEecCCCceecCccchhhhcCCCCCEEEEEc
Q 043022 163 KRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITG 196 (361)
Q Consensus 163 ~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~g 196 (361)
- | .-.-..-|..+++|+.|.++-
T Consensus 161 I--p---------~Tl~~T~l~~~k~G~~VNiE~ 183 (206)
T PRK13020 161 I--P---------ETLRATNLGAKKVGDLVNIEI 183 (206)
T ss_pred e--H---------HHHhhcccccCCCCCEEEEeE
Confidence 3 2 222233366799999999973
No 115
>PRK09289 riboflavin synthase subunit alpha; Provisional
Probab=29.57 E-value=2e+02 Score=24.97 Aligned_cols=75 Identities=20% Similarity=0.205 Sum_probs=47.5
Q ss_pred eEEEEeEeeecCCCCCCceEEEEeeCCCcc-c-cCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEE
Q 043022 86 IGRCLLNTKITGDDAPGETWHMVFSTEGEV-P-YKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVK 163 (361)
Q Consensus 86 ~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l-~-~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~ 163 (361)
.++|.++++... .+++++..|+.+ + ..+|++|.+. +. ..|++... ++.+++.+-
T Consensus 105 ~g~I~~i~~~~~------~~~~~i~~~~~~~~~l~~kgSIavd--Gv----------sLTV~~~~------~~~f~v~li 160 (194)
T PRK09289 105 TGEIVSIEKEGN------SVEFRFKAPAELAKYIVEKGSIAVD--GV----------SLTVNEVD------GDRFSVNLI 160 (194)
T ss_pred EEEEEEEEECCC------cEEEEEECChHHhcccccCCEEEEc--cE----------EEEEEEEc------CCEEEEEEe
Confidence 456666666543 578888888654 3 6889977775 21 57777763 456665553
Q ss_pred EeeEecCCCceecCccchhhhcCCCCCEEEEE
Q 043022 164 RLVYTNENGEIVKGVCSNFLCDLKPGAEVKIT 195 (361)
Q Consensus 164 ~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~ 195 (361)
| .-.-..-|..+++|+.|.++
T Consensus 161 --p---------eTl~~T~l~~~k~G~~VNlE 181 (194)
T PRK09289 161 --P---------HTLENTTLGEKKVGDRVNLE 181 (194)
T ss_pred --H---------HHHhhCccccCCCCCEEEEe
Confidence 2 12222335569999999886
No 116
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=27.94 E-value=4.2e+02 Score=23.54 Aligned_cols=46 Identities=15% Similarity=0.092 Sum_probs=31.3
Q ss_pred CCeeEEEEeEeeecCCCCCCceEEEEeeCCCc-cccCCCcEEEEecCCC
Q 043022 83 TPYIGRCLLNTKITGDDAPGETWHMVFSTEGE-VPYKEGQSIGVIADGV 130 (361)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~-l~~~pGQ~v~l~~~~~ 130 (361)
..+.++|..+...... ....+.+++..+.+ ..+.+|+++.+.+...
T Consensus 153 ~~~~g~v~~I~~~~~~--~~~~~~v~~~~~~~~~~l~~G~~v~v~i~~~ 199 (265)
T TIGR00999 153 RPLPARVDYVGPEVDG--SSRTAKVRVLIKNENLTLKPGLFVQVRVETK 199 (265)
T ss_pred CEEEEEEEEEccccCC--CCceEEEEEEEeCCCCccCCCCEEEEEEecC
Confidence 3588888888765432 23466777766543 3589999999998643
No 117
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=25.90 E-value=2.8e+02 Score=28.10 Aligned_cols=93 Identities=13% Similarity=0.049 Sum_probs=53.3
Q ss_pred ecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCc-ccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEe
Q 043022 216 ATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYI 294 (361)
Q Consensus 216 a~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v 294 (361)
+.|---|-++.++-++..+..-... .++|-|+ .+.+++ ..-...|..++.+.+ ++++..+.-...
T Consensus 270 gSgktaAfi~pm~~himdq~eL~~g-~gPi~vi-lvPTrela~Qi~~eaKkf~K~y--gl~~v~~ygGgs---------- 335 (731)
T KOG0339|consen 270 GSGKTAAFIWPMIVHIMDQPELKPG-EGPIGVI-LVPTRELASQIFSEAKKFGKAY--GLRVVAVYGGGS---------- 335 (731)
T ss_pred cCcchhHHHHHHHHHhcchhhhcCC-CCCeEEE-EeccHHHHHHHHHHHHHhhhhc--cceEEEeecCCc----------
Confidence 3444455667777776544321111 3666654 555554 445556777777666 566655433221
Q ss_pred cchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHH
Q 043022 295 QTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDD 330 (361)
Q Consensus 295 ~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~ 330 (361)
+.+++. .|+ .++.+.||-|..|++-|.-
T Consensus 336 ---k~eQ~k----~Lk-~g~EivVaTPgRlid~Vkm 363 (731)
T KOG0339|consen 336 ---KWEQSK----ELK-EGAEIVVATPGRLIDMVKM 363 (731)
T ss_pred ---HHHHHH----hhh-cCCeEEEechHHHHHHHHh
Confidence 123332 244 5999999999998887753
No 118
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=25.26 E-value=4.7e+02 Score=25.43 Aligned_cols=95 Identities=17% Similarity=0.123 Sum_probs=58.4
Q ss_pred hhc-CCCCCEEEE--EccCCCCcCCCC-CCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccc
Q 043022 183 LCD-LKPGAEVKI--TGPVGKEMLMPR-DPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLL 258 (361)
Q Consensus 183 L~~-l~~G~~v~i--~gP~G~~~~~~~-~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~ 258 (361)
+.+ +++||+|.+ .|.+|.-|..-. .-..++..|...-|-++=..-+++.+..+.+ ..-+.+.|+--+..-+-
T Consensus 73 v~sl~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~----~~~V~~vH~ETSTGvln 148 (383)
T COG0075 73 VASLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPD----IKAVAVVHNETSTGVLN 148 (383)
T ss_pred HHhccCCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCC----ccEEEEEeccCcccccC
Confidence 345 789999775 488887543221 1225677888888877777788887764321 12344444443333445
Q ss_pred cHHHHHHHHHhCCCceEEEEEecC
Q 043022 259 YKEEFEKMKEKAPENFRLDFAVSR 282 (361)
Q Consensus 259 ~~~el~~l~~~~~~~~~~~~~~s~ 282 (361)
-.+++.++.+++. .+-+.=++|.
T Consensus 149 pl~~I~~~~k~~g-~l~iVDaVsS 171 (383)
T COG0075 149 PLKEIAKAAKEHG-ALLIVDAVSS 171 (383)
T ss_pred cHHHHHHHHHHcC-CEEEEEeccc
Confidence 6788999998885 4444444443
No 119
>PRK13020 riboflavin synthase subunit alpha; Provisional
Probab=24.61 E-value=2.7e+02 Score=24.41 Aligned_cols=78 Identities=21% Similarity=0.214 Sum_probs=50.5
Q ss_pred eeEEEEeEeeecCCCCCCceEEEEeeCCCcc--ccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEE
Q 043022 85 YIGRCLLNTKITGDDAPGETWHMVFSTEGEV--PYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCV 162 (361)
Q Consensus 85 ~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l--~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V 162 (361)
-.++|.++++... .++++++.|..+ ...+|++|.+. +. ..|+.... .+.+.+.+
T Consensus 8 ~vg~I~~i~~~~~------~~~l~i~~~~~~~~~l~~g~SIavn--GV----------cLTV~~v~------~~~f~~~l 63 (206)
T PRK13020 8 ATAEVVAIHKKDG------LNTLEIAFPPELLEGLEIGASVAVN--GV----------CLTVTKIE------GDRVFFDV 63 (206)
T ss_pred EEEEEEEEEECCC------cEEEEEEeChhHhccCCCCCEEEEC--CE----------EEEEEEEC------CCEEEEEE
Confidence 3567777777544 577888887643 37899987775 21 46777663 35666655
Q ss_pred EEeeEecCCCceecCccchhhhcCCCCCEEEEEcc
Q 043022 163 KRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGP 197 (361)
Q Consensus 163 ~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP 197 (361)
-. .-.-..-|..+++|+.|.++.+
T Consensus 64 ip-----------eTl~~T~l~~~~~G~~VNlEra 87 (206)
T PRK13020 64 ME-----------ETLRLTNLADLRVGDRVNIERS 87 (206)
T ss_pred hH-----------HHHhhCchhhccCCCEEeeEec
Confidence 32 1222334666899999999865
No 120
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=24.46 E-value=40 Score=28.65 Aligned_cols=15 Identities=40% Similarity=0.718 Sum_probs=13.3
Q ss_pred CcEEEEecCCchhhH
Q 043022 210 ATVIMLATGTGIAPF 224 (361)
Q Consensus 210 ~~iv~Ia~GtGiaP~ 224 (361)
-.+|+.-||||+||=
T Consensus 68 ~DvvlttGGTG~t~R 82 (169)
T COG0521 68 VDVVLTTGGTGITPR 82 (169)
T ss_pred CCEEEEcCCccCCCC
Confidence 579999999999984
No 121
>PLN02673 quinolinate synthetase A
Probab=23.52 E-value=60 Score=33.75 Aligned_cols=26 Identities=27% Similarity=0.120 Sum_probs=19.5
Q ss_pred ccccccccCCCCcccceecCCCcccc
Q 043022 7 AVSLPTSKSTSLPTRTSIISPDRITF 32 (361)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~p~p~~~t~ 32 (361)
++|+++++|+++.+..|+|.|.+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (724)
T PLN02673 2 SSSPTSSSSSSFLSLLPNPSPNFRTT 27 (724)
T ss_pred CCccccccccceeeecCCCCCCcccc
Confidence 35566777788888889998887663
No 122
>PRK09289 riboflavin synthase subunit alpha; Provisional
Probab=22.98 E-value=4.5e+02 Score=22.80 Aligned_cols=77 Identities=21% Similarity=0.206 Sum_probs=49.2
Q ss_pred eEEEEeEeeecCCCCCCceEEEEeeCCCcc-ccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEE
Q 043022 86 IGRCLLNTKITGDDAPGETWHMVFSTEGEV-PYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKR 164 (361)
Q Consensus 86 ~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l-~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~ 164 (361)
.++|.++++... .++++++.|..+ ...+|+.|.+. +. ..|+... +++.+.+.+-.
T Consensus 9 ~g~V~~i~~~~~------~~~~~i~~~~~~~~l~~g~SIAvn--Gv----------cLTV~~~------~~~~f~~~l~~ 64 (194)
T PRK09289 9 VGTVESIEPKGD------GLRLTIEAGKLLSDLKLGDSIAVN--GV----------CLTVTEI------DGDSFTVDVSP 64 (194)
T ss_pred EEEEEEEEEcCC------cEEEEEEcCccccccccCCEEEEc--cE----------EEEEEEE------cCCEEEEEEEH
Confidence 466777776554 477888887543 47889977765 21 4666665 34567776643
Q ss_pred eeEecCCCceecCccchhhhcCCCCCEEEEEcc
Q 043022 165 LVYTNENGEIVKGVCSNFLCDLKPGAEVKITGP 197 (361)
Q Consensus 165 ~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP 197 (361)
. .=..| -|..+++|+.|.++.+
T Consensus 65 e----------Tl~~T-~l~~l~~G~~VNLEra 86 (194)
T PRK09289 65 E----------TLRRT-NLGDLKVGDRVNLERA 86 (194)
T ss_pred H----------HhhhC-chhhccCCCEEEEeEc
Confidence 2 11123 3466999999999865
No 123
>COG5310 Homospermidine synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.09 E-value=2e+02 Score=27.36 Aligned_cols=43 Identities=35% Similarity=0.419 Sum_probs=31.7
Q ss_pred CCeEEEEEC-CcchHH-HHHHHHHHHHHccC--------CCHHHHHHHHHHcC
Q 043022 312 DNTYVYMCG-LRGMEK-GIDDIMVSLAANDG--------IDWLDYKKQLKKSE 354 (361)
Q Consensus 312 ~~~~vyvCG-p~~m~~-~v~~~L~~~g~~~~--------~~~~~~~~~l~~~~ 354 (361)
+...|-.|| .|+|+. -|.++|.++....+ .+.+.|.+-|++-|
T Consensus 154 g~TaVs~cGANPGmvswFVKqaLvdlAad~~ld~~ep~~ddr~gwAkLmkK~G 206 (481)
T COG5310 154 GPTAVSTCGANPGMVSWFVKQALVDLAADLGLDFEEPAQDDREGWAKLMKKAG 206 (481)
T ss_pred CCeeeeecCCCchHHHHHHHHHHHHHHHHhCcCccCCcchhhHHHHHHHHHcC
Confidence 456788899 578887 67788888766533 55677888888766
No 124
>PF05720 Dicty_CAD: Cell-cell adhesion domain; InterPro: IPR008601 This family is based on a group of Dictyostelium discoideum (Slime mould) proteins that are essential in early development []. P16642 from SWISSPROT and P16643 from SWISSPROT are located on the cell surface and mediate cell-cell adhesion.; GO: 0007155 cell adhesion
Probab=20.46 E-value=50 Score=24.31 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=17.7
Q ss_pred cccCCCCcccceecCCCcccccc
Q 043022 12 TSKSTSLPTRTSIISPDRITFRK 34 (361)
Q Consensus 12 ~~~~~~~~~~~~~p~p~~~t~~~ 34 (361)
+=++-...+|.|.+||.|+++|=
T Consensus 9 tI~G~a~~lP~p~i~PpP~~~rf 31 (82)
T PF05720_consen 9 TISGKAIPLPTPRIFPPPYFIRF 31 (82)
T ss_pred EeecccccCCCCccCCCCeEEEE
Confidence 34556678889999999998765
No 125
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=20.09 E-value=4.6e+02 Score=25.15 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=27.8
Q ss_pred CeeEEEEeEeeecCCCCCCceEEEEeeCCCc-cccCCCcEEEEecCC
Q 043022 84 PYIGRCLLNTKITGDDAPGETWHMVFSTEGE-VPYKEGQSIGVIADG 129 (361)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~-l~~~pGQ~v~l~~~~ 129 (361)
++.++|..+....+. ...++.+++..+.+ ..++||+++.+.+..
T Consensus 254 ~~~g~v~~i~~~~d~--~t~t~~V~~~~~n~~~~L~pGm~~~v~i~~ 298 (385)
T PRK09578 254 PLKGKLLFSDLAVDP--TTDTVAMRALFPNPERELLPGAYVRIALDR 298 (385)
T ss_pred CcceEEEEeeccCCC--CCCeEEEEEEEeCCCCcCCCCCEEEEEEEc
Confidence 356777655543222 12366677666543 458999999999864
Done!