Query 043022
Match_columns 361
No_of_seqs 241 out of 1879
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 21:11:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043022.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043022hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vo2_A Putative uncharacterize 100.0 6.7E-55 2.3E-59 408.7 34.7 298 64-361 13-310 (310)
2 1fnb_A Ferredoxin-NADP+ reduct 100.0 3.7E-50 1.3E-54 377.2 34.7 300 62-361 15-314 (314)
3 2b5o_A FNR, ferredoxin--NADP r 100.0 2.4E-49 8.1E-54 383.1 33.2 292 70-361 108-402 (402)
4 3lo8_A Ferredoxin--NADP reduct 100.0 1.1E-48 3.9E-53 366.6 32.2 287 74-361 18-311 (311)
5 2bmw_A Ferredoxin--NADP reduct 100.0 2.1E-48 7.3E-53 363.6 33.7 287 75-361 12-304 (304)
6 2rc5_A Ferredoxin-NADP reducta 100.0 8.9E-47 3E-51 354.2 28.5 293 51-361 1-314 (314)
7 3qfs_A CPR, P450R, NADPH--cyto 100.0 2E-47 6.7E-52 372.4 8.6 303 22-361 138-457 (458)
8 2qtl_A MSR;, methionine syntha 100.0 8.9E-48 3E-52 382.5 6.2 310 21-361 196-538 (539)
9 1ddg_A Sulfite reductase (NADP 100.0 2.3E-44 8E-49 344.3 29.5 269 78-361 5-374 (374)
10 3jqq_A Ferredoxin NADP reducta 100.0 1.7E-44 5.8E-49 338.7 25.6 274 71-361 2-316 (316)
11 4dql_A Bifunctional P-450/NADP 100.0 9.3E-47 3.2E-51 362.7 8.3 298 22-361 81-391 (393)
12 1f20_A Nitric-oxide synthase; 100.0 1.4E-46 4.7E-51 366.5 8.7 299 23-361 120-433 (435)
13 2bpo_A CPR, P450R, NADPH-cytoc 100.0 3.3E-47 1.1E-51 389.3 -0.4 308 22-361 333-682 (682)
14 3qe2_A CPR, P450R, NADPH--cyto 100.0 1.1E-45 3.7E-50 374.3 8.5 303 22-361 298-617 (618)
15 1tll_A Nitric-oxide synthase, 100.0 1.4E-43 4.9E-48 362.5 7.0 301 24-361 342-654 (688)
16 1tvc_A Methane monooxygenase c 100.0 4.6E-39 1.6E-43 292.1 22.1 224 80-339 6-236 (250)
17 1krh_A Benzoate 1,2-dioxygenas 100.0 1.1E-38 3.7E-43 302.2 22.1 248 46-339 76-327 (338)
18 1qfj_A Protein (flavin reducta 100.0 9.8E-39 3.4E-43 286.6 18.6 218 85-340 3-222 (232)
19 2eix_A NADH-cytochrome B5 redu 100.0 6.8E-38 2.3E-42 283.0 23.2 228 80-339 7-237 (243)
20 2r6h_A NADH:ubiquinone oxidore 100.0 1.6E-37 5.3E-42 287.9 23.4 241 81-339 6-281 (290)
21 1umk_A B5R, NADH-cytochrome B5 100.0 8.3E-38 2.9E-42 287.6 21.1 239 80-339 12-269 (275)
22 1fdr_A Flavodoxin reductase; f 100.0 1.6E-37 5.4E-42 281.5 21.3 239 84-361 4-247 (248)
23 4fk8_A Ferredoxin--NADP reduct 100.0 4.7E-38 1.6E-42 288.7 12.8 238 83-361 18-268 (271)
24 2cnd_A NADH-dependent nitrate 100.0 1.1E-36 3.9E-41 279.3 21.1 239 80-338 8-262 (270)
25 4eh1_A Flavohemoprotein; struc 100.0 7.1E-36 2.4E-40 269.7 22.0 220 84-339 3-227 (243)
26 2bgi_A Ferredoxin-NADP(H) redu 100.0 3.2E-36 1.1E-40 276.8 20.0 229 82-340 14-253 (272)
27 2qdx_A Ferredoxin reductase; o 100.0 8.8E-36 3E-40 271.5 17.4 225 84-339 3-238 (257)
28 1gvh_A Flavohemoprotein; oxido 100.0 1.2E-34 4.1E-39 280.1 22.0 222 83-339 151-382 (396)
29 1ep3_B Dihydroorotate dehydrog 100.0 6.1E-35 2.1E-39 266.8 18.4 209 85-339 6-216 (262)
30 1cqx_A Flavohemoprotein; globi 100.0 8.1E-34 2.8E-38 274.9 23.2 226 83-339 153-388 (403)
31 4g1v_A Flavohemoglobin; three 100.0 1.5E-33 5.1E-38 272.7 24.7 223 83-339 148-382 (399)
32 2pia_A Phthalate dioxygenase r 100.0 7.3E-33 2.5E-37 260.3 20.1 205 81-334 5-214 (321)
33 2gpj_A Siderophore-interacting 100.0 2.1E-28 7.1E-33 222.1 14.8 207 82-339 6-218 (252)
34 3lrx_A Putative hydrogenase; a 99.9 3.7E-25 1.3E-29 186.4 3.1 141 186-346 1-146 (158)
35 3lyu_A Putative hydrogenase; t 99.9 3.8E-23 1.3E-27 170.9 4.6 128 192-339 3-134 (142)
36 3a1f_A Cytochrome B-245 heavy 99.8 2.3E-21 7.9E-26 167.0 8.5 146 192-338 1-172 (186)
37 4dql_A Bifunctional P-450/NADP 92.0 0.29 1E-05 46.2 7.1 49 82-130 4-52 (393)
38 2qtl_A MSR;, methionine syntha 91.8 0.32 1.1E-05 48.0 7.3 53 78-130 108-161 (539)
39 1f20_A Nitric-oxide synthase; 91.2 0.31 1.1E-05 46.7 6.3 53 78-130 24-78 (435)
40 3qfs_A CPR, P450R, NADPH--cyto 89.7 0.65 2.2E-05 44.7 7.2 52 78-130 56-108 (458)
41 1tll_A Nitric-oxide synthase, 83.8 2 6.8E-05 43.6 7.2 51 80-130 247-299 (688)
42 3qe2_A CPR, P450R, NADPH--cyto 81.5 2.8 9.7E-05 41.9 7.2 51 79-130 217-268 (618)
43 2bpo_A CPR, P450R, NADPH-cytoc 80.9 2.4 8.3E-05 42.9 6.5 51 79-130 254-305 (682)
44 3s2u_A UDP-N-acetylglucosamine 62.6 7.2 0.00025 35.9 4.6 26 210-235 3-30 (365)
45 1ddg_A Sulfite reductase (NADP 61.6 0.28 9.6E-06 46.0 -5.4 34 27-60 81-115 (374)
46 3ddy_A Lumazine protein, LUMP; 40.4 1.2E+02 0.0042 24.9 8.1 79 83-196 102-182 (186)
47 3stb_C RNA-editing complex pro 37.5 14 0.00048 29.5 1.7 46 176-221 94-144 (148)
48 2b7e_A PRE-mRNA processing pro 32.6 43 0.0015 22.1 3.2 38 320-357 1-39 (59)
49 3fpp_A Macrolide-specific effl 32.4 41 0.0014 30.2 4.4 49 81-129 221-270 (341)
50 3ddy_A Lumazine protein, LUMP; 29.0 2.4E+02 0.0082 23.1 8.4 77 85-197 8-86 (186)
51 3a35_A Lumazine protein, LUMP; 25.9 2.8E+02 0.0095 22.8 8.0 77 84-195 103-181 (190)
52 3nrs_A Dihydrofolate:folylpoly 24.9 4.2E+02 0.014 24.5 11.1 111 210-332 311-435 (437)
53 4dka_C RNA-editing complex pro 23.4 1.6E+02 0.0053 21.8 5.1 41 181-221 55-100 (105)
54 3mvn_A UDP-N-acetylmuramate:L- 22.0 2.9E+02 0.0098 21.6 10.1 34 298-332 125-158 (163)
55 4a54_B DCP2, mRNA decapping co 21.9 45 0.0015 20.2 1.7 19 11-29 27-45 (52)
56 2dof_A Transcription elongatio 20.2 1.1E+02 0.0037 21.8 3.6 33 325-357 20-52 (85)
No 1
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=100.00 E-value=6.7e-55 Score=408.66 Aligned_cols=298 Identities=86% Similarity=1.420 Sum_probs=264.3
Q ss_pred hhcccccccccccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecc
Q 043022 64 EKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYS 143 (361)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~yS 143 (361)
....+..+.+++.+.|.|..++.++|+++++++++..++++++|+|..+..++|.||||+.|.+++.+.+|.+++.|+||
T Consensus 13 ~~~~~~~~~~~~~~~~~p~~~~~~~V~~~~~l~~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~R~yS 92 (310)
T 3vo2_A 13 AKTSKKQDEGLVTNKYKPKEPYVGRCLSNTRITGDDAPGETWHMVFSTEGEIPYREGQSIGIIADGEDKNGKPHKLRLYS 92 (310)
T ss_dssp --CCSBSCTTCCCCSBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTCCCCCTTCEEEEECSSBCTTSCBCCCEEEE
T ss_pred hhhhcccccCCceeeecCCCCEEEEEEEEEEccCCCCCccEEEEEEeCCCCCcccCCCEEEEECCCcCCCCCcCcceeee
Confidence 34455666788889999999999999999999998888889999999988889999999999998876667677899999
Q ss_pred cccCCCCCCCCCcEEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhh
Q 043022 144 IASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAP 223 (361)
Q Consensus 144 ias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP 223 (361)
|+|+|..+..+++.++|+|++++|.+..++.++|.+|+||+++++|+.|.|.||+|.+|.++.+..+++|||||||||||
T Consensus 93 ias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP 172 (310)
T 3vo2_A 93 IASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGADVKITGPVGKEMLMPKDPNATVIMLATGTGIAP 172 (310)
T ss_dssp CCSCTTTTTTSSSEEEEEEECCEEECTTSCEEECHHHHHHHTCCTTCEEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHH
T ss_pred cCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCcchhhHHhcCCCCCEEEEEeccCCcccCCCCCCCCEEEEeCCcchhH
Confidence 99998632224689999999998887777778899999999999999999999999988877666789999999999999
Q ss_pred HHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHH
Q 043022 224 FRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYAN 303 (361)
Q Consensus 224 ~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~ 303 (361)
|++|+++++..........++++||||+|+.+|++|.+||++|.++++++|++++++|+++++|.+.++|+++.+.+..+
T Consensus 173 ~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~v~~~~sr~~~~~~g~~~~v~~~l~~~~~ 252 (310)
T 3vo2_A 173 FRSFLWKMFLEEHEDYKFSGLAWLFLGVPTSDSLLYKEELEKMKEMAPDNFRLDFAVSREQTNAAGEKMYIQTRMAEYRE 252 (310)
T ss_dssp HHHHHHHHHSSCCTTCCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHH
T ss_pred HHHHHHHHHHhhcccccCCCcEEEEEEecChhhcccHHHHHHHHHhCCCCEEEEEEECCCCCCCCCcceehHHHHHHHHH
Confidence 99999998865433222247899999999999999999999999998779999999999988899999999999999888
Q ss_pred HHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHccCCCHHHHHHHHHHcCCeeEeeC
Q 043022 304 ELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 304 ~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~~~~~~~~~~l~~~~r~~~ev~ 361 (361)
++++.+..++..||+|||++|+++++++|.+++.+.+..+++|+++|+++|||++|||
T Consensus 253 ~l~~~l~~~~~~vyvCGp~~M~~~v~~~L~~~~~~~g~~~~~~~~~l~~~~r~~~e~y 310 (310)
T 3vo2_A 253 ELWELLKKDNTYVYMCGLKGMEKGIDDIMLNLAAKDGIDWMQYKKQLKKGEQWNVEVY 310 (310)
T ss_dssp HHHHHHTSTTEEEEEEESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHhcccCCcEEEEeCCHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHCCceEEecC
Confidence 8877776568999999999999999999999999999999999999999999999999
No 2
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=100.00 E-value=3.7e-50 Score=377.19 Aligned_cols=300 Identities=88% Similarity=1.453 Sum_probs=248.9
Q ss_pred hhhhcccccccccccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCcee
Q 043022 62 KVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRL 141 (361)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ 141 (361)
+.++........++...+.+..++.++|++++.+++++...++++|+|..+..+.|+||||+.|.+++.+.++.++.+|+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ 94 (314)
T 1fnb_A 15 KVEKHSKKMEEGITVNKFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEGEIPYREGQSVGVIPDGEDKNGKPHKLRL 94 (314)
T ss_dssp ----CCSBSCTTCCCCSBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTCCCCCTTCEEEEECSSBCTTSSBCCCEE
T ss_pred cccchhhhhcccCCccccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCCCCcCCCCEEEEecCCCCcCCCcCCcee
Confidence 33444455555555566778888999999999999844444599999999877889999999999887654454667999
Q ss_pred cccccCCCCCCCCCcEEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCch
Q 043022 142 YSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGI 221 (361)
Q Consensus 142 ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGi 221 (361)
|||+|.|..+..+.+.++|+|+++.|.+..+..+.|.+|+||+++++|+.|.|.||+|++|.++.+..+++|||||||||
T Consensus 95 ySi~s~p~~~~~~~~~~~l~Vk~~~y~~~~g~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGI 174 (314)
T 1fnb_A 95 YSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLTGPVGKEMLMPKDPNATIIMLGTGTGI 174 (314)
T ss_dssp EECCSCSSCTTSSSCEEEEEEECCEEECTTSCEEECHHHHHHHHCCTTCEEEEEEEECSTTCCBSCTTCEEEEEEEGGGG
T ss_pred EecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCCchhhHhhcCCCCCEEEEEeccCCceeCCCCCCCCEEEEeCCccH
Confidence 99999985211125899999999877665555568999999999999999999999999887765556899999999999
Q ss_pred hhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHh
Q 043022 222 APFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEY 301 (361)
Q Consensus 222 aP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~ 301 (361)
|||++|+++++..........++++||||+|+.+|++|.+||+++.+++++++++++++|++++.|.|.++||++.+.+.
T Consensus 175 aP~~s~l~~~~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~ 254 (314)
T 1fnb_A 175 APFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQY 254 (314)
T ss_dssp HHHHHHHHHHHTCCBTTBCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTEEEEEEETTTCBCTTCCBCCHHHHHHTT
T ss_pred HHHHHHHHHHHHhccccccCCCCEEEEEecCCHHHhhhHHHHHHHHHhCCCcEEEEEEECCCCcccCCCceechHHHHHh
Confidence 99999999987653211111368999999999999999999999998887689999999998888888899999999887
Q ss_pred HHHHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHccCCCHHHHHHHHHHcCCeeEeeC
Q 043022 302 ANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 302 ~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~~~~~~~~~~l~~~~r~~~ev~ 361 (361)
.+.+.+.+..++..||+|||++|+++++++|.+++.+.+..+++|+++|+++|||++|||
T Consensus 255 ~~~~~~~~~~~~~~vyvCGp~~m~~~v~~~L~~~~~~~g~~~~~~~~~l~~~~r~~~d~~ 314 (314)
T 1fnb_A 255 AVELWEMLKKDNTYVYMCGLKGMEKGIDDIMVSLAAAEGIDWIEYKRQLKKAEQWNVEVY 314 (314)
T ss_dssp HHHHHHHTTSTTEEEEEEECTTHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHCCcEEEecC
Confidence 776666563358899999999999999999999999999999999999999999999999
No 3
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}
Probab=100.00 E-value=2.4e-49 Score=383.07 Aligned_cols=292 Identities=55% Similarity=1.038 Sum_probs=246.4
Q ss_pred cccccccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCCCCCCCCCCceecccccCC
Q 043022 70 MEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSA 148 (361)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p 148 (361)
++.+++.+.|.+..++.++|++++.++++....++++|+|+.+. .+.|+||||+.|.+++.+.++.++++|+|||+|.|
T Consensus 108 ~~~~~p~~~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySIas~p 187 (402)
T 2b5o_A 108 TDTSVPVNIYRPKTPFLGKCIENYELVDEGGSGTVRHVTFDISEGDLRYLEGQSIGIIPPGEDKNGKPHKLRLYSIASTR 187 (402)
T ss_dssp ---CCCCCSSCSSSCEEEEEEEEEECSCTTCCSCEEEEEEECTTSCCCCCTTCEEEEECSSEETTTEECCCEEEEBCSCT
T ss_pred cccCCCcccccCCCCEEEEEEEEEEcCCCCCCCcEEEEEEECCCCCCCcCCCCEEEEEecCCCcCCCccCceeeeccCCC
Confidence 33456666788888999999999999995555559999999876 48899999999998765444446679999999998
Q ss_pred CCCCCCCcEEEEEEEEeeEecC-CCceecCccchhhhcCCCC-CEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHH
Q 043022 149 LGDFGDSKTVSLCVKRLVYTNE-NGEIVKGVCSNFLCDLKPG-AEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRG 226 (361)
Q Consensus 149 ~~~~~~~~~l~~~V~~~~~~~~-~~~~~~G~~S~~L~~l~~G-~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~ 226 (361)
..+..+++.++|+|+++.|..+ .+..+.|.+|+||+++++| |.|.|.||+|.+|.++.+..+++||||||||||||++
T Consensus 188 ~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~G~d~v~v~gP~G~~~~l~~~~~~~vvlIAgGtGIaP~~s 267 (402)
T 2b5o_A 188 HGDMEDNKTVSLCVRQLEYQDPESGETVYGVCSTYLCNLPVGTDDVKITGPVGKEMLLPDDEDATVVMLATGTGIAPFRA 267 (402)
T ss_dssp TTTTTSSCEEEEEEECCEEECTTTCCEEECHHHHHHHTCCTTCCCEEEEEEECSTTCCCSCTTCEEEEEEEGGGGHHHHH
T ss_pred ccccCCCCEEEEEEEEeeecccccCcCCCCchhHHHhhCCCCCceEEEEcccCCcccCCccCCCCEEEEEcccCHHHHHH
Confidence 6311126899999999776552 2334689999999999999 9999999999988777556789999999999999999
Q ss_pred HHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHH
Q 043022 227 FLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELW 306 (361)
Q Consensus 227 ~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~ 306 (361)
|+++++..........++++||||+|+.+|++|.+||++|.++++++|++++++|++++.|.|.++||++.+.+..++++
T Consensus 268 ~l~~l~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~~~~~~~v~~~~S~~~~~~~g~~~~v~~~l~~~~~~l~ 347 (402)
T 2b5o_A 268 FLWRMFKEQHEDYKFKGKAWLIFGVPYTANILYKDDFEKMAAENPDNFRLTYAISREQKTADGGKVYVQSRVSEYADELF 347 (402)
T ss_dssp HHHHHHTCCCSSCCCCSEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEETTTCBCTTSCBCCHHHHHHHTHHHHH
T ss_pred HHHHHHHhccccccccCCEEEEEecCCHHHhHHHHHHHHHHHhCCCcEEEEEEECCCCcccCCCccchHHHHHHhHHHHH
Confidence 99998765422211237899999999999999999999999988778999999999988888899999999998877777
Q ss_pred HHhccCCeEEEEECCcchHHHHHHHHHHHHHccCCCHHHHHHHHHHcCCeeEeeC
Q 043022 307 ELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 307 ~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~~~~~~~~~~l~~~~r~~~ev~ 361 (361)
+.+...+..||+|||++|+++++++|.+++...+..+++++++|+++|||++|||
T Consensus 348 ~~l~~~~~~vyvCGP~~M~~~v~~~L~~~g~~~g~~~~~~~~~m~~~~Ry~~e~~ 402 (402)
T 2b5o_A 348 EMIQKPNTHVYMCGLKGMQPPIDETFTAEAEKRGLNWEEMRRSMKKEHRWHVEVY 402 (402)
T ss_dssp HHHTSTTEEEEEEECGGGHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTCEEEEEC
T ss_pred HHhccCCcEEEEECCHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHCCCEEEecC
Confidence 7664357899999999999999999999999999999999999999999999999
No 4
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=100.00 E-value=1.1e-48 Score=366.60 Aligned_cols=287 Identities=51% Similarity=0.919 Sum_probs=233.4
Q ss_pred cccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCC--CCCCCCceecccccCCCCC
Q 043022 74 VIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDK--NAKPHKLRLYSIASSALGD 151 (361)
Q Consensus 74 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~--~~~~~~~R~ySias~p~~~ 151 (361)
.+.+.+.|..++.++|++++.++++....++++|+|..+..+.|+||||+.|.+++.+. +|.+.++|+|||+|+|..+
T Consensus 18 ~~~~~~~~~~~~~~~V~~~~~~t~~~~~~~v~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~ 97 (311)
T 3lo8_A 18 PPLNTYKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGD 97 (311)
T ss_dssp CCCCSBBTTBCEEEEEEEEEECSCTTSSSCEEEEEEECTTSSCCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTT
T ss_pred CCccccCCCCCeEEEEEeeEeccCCCCCCccEEEEEeCCCCCcccCCCEEEEeCCCCccccCCCCCCceeeEecCCCccc
Confidence 34567889999999999999999332223399999999888899999999999986532 1335579999999998632
Q ss_pred CCCCcEEEEEEEEeeEecCC----CceecCccchhhhcCCCCCEEEEEccCCCCcCCCC-CCCCcEEEEecCCchhhHHH
Q 043022 152 FGDSKTVSLCVKRLVYTNEN----GEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPR-DPNATVIMLATGTGIAPFRG 226 (361)
Q Consensus 152 ~~~~~~l~~~V~~~~~~~~~----~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~-~~~~~iv~Ia~GtGiaP~~~ 226 (361)
..+++.++|+|+++.|..+. +..++|.+|+||+++++|+.|.|.||+|.++..+. +..+++||||||||||||++
T Consensus 98 ~~~~~~~~l~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s 177 (311)
T 3lo8_A 98 NFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRG 177 (311)
T ss_dssp TTSSSEEEEEEECCCCCCTTTCCCCGGGSCHHHHHHHTCCTTCEEEEEEEECCTTCCCCSCTTCEEEEEEEGGGGHHHHH
T ss_pred CCCCCEEEEEEEEEEecccccCcCCcCCCCchhhHHhcCCCcCEEEEEeccCCcccCCCcCCCCCEEEEECCEEHHHHHH
Confidence 11358999999986332211 11247999999999999999999999999887763 35689999999999999999
Q ss_pred HHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHH
Q 043022 227 FLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELW 306 (361)
Q Consensus 227 ~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~ 306 (361)
|+++++..........++++|||++|+.+|++|.+||++|.+++++++++++++|++++.|.+.++|+++.+.+..+++.
T Consensus 178 ~l~~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~ 257 (311)
T 3lo8_A 178 YLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSDEIF 257 (311)
T ss_dssp HHHHHHTEECTTCCCCSEEEEEEEESSGGGCSSHHHHHHHHHHCTTTEEEEEEETTTC-------CCHHHHHHHTHHHHH
T ss_pred HHHHHHHhccccccCCCCEEEEEecCChHHhhHHHHHHHHHHhCCCcEEEEEEECCCCcccCCCcceehHHHHHHHHHHH
Confidence 99998865432222236899999999999999999999999988778999999999988888889999999998877776
Q ss_pred HHhccCCeEEEEECCcchHHHHHHHHHHHHHccCCCHHHHHHHHHHcCCeeEeeC
Q 043022 307 ELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 307 ~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~~~~~~~~~~l~~~~r~~~ev~ 361 (361)
+.+. ++..||+|||+.|+++++++|.++..+.+..+++|+++|+++|||++|||
T Consensus 258 ~~~~-~~~~vyvCGp~~m~~~v~~~L~~~~~~~g~~~~~~~~~l~~~~ry~~e~y 311 (311)
T 3lo8_A 258 KLLD-GGAHIYFCGLKGMMPGIQDTLKKVAERRGESWDQKLAQLKKNKQWHVEVY 311 (311)
T ss_dssp HHHH-TTCEEEEEECGGGHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTCEEEEEC
T ss_pred Hhhc-CCcEEEEECCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHCCcEEEecC
Confidence 6654 58999999999999999999999999988999999999999999999999
No 5
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=100.00 E-value=2.1e-48 Score=363.58 Aligned_cols=287 Identities=53% Similarity=0.992 Sum_probs=239.8
Q ss_pred ccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCC
Q 043022 75 IVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFG 153 (361)
Q Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~ 153 (361)
+.+.|.+..++.++|+++++++++....++++++|..+. .+.|+||||+.|.+++.+.++.++++|+|||+|+|..+..
T Consensus 12 ~~~~~~~~~~~~~~V~~~~~l~~~~~~~~v~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~~~~~~~ 91 (304)
T 2bmw_A 12 PVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDV 91 (304)
T ss_dssp CCCSBBTTBCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECSSBCTTSCBCCCEEEEBCSCTTTTTT
T ss_pred cccccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCCccccCCCCEEEEEcCCCcccCCCCCCcceecCCCCcccCC
Confidence 334667778899999999999994433449999999875 5789999999999887654555667999999999852111
Q ss_pred CCcEEEEEEEEeeEecCC-CceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHH
Q 043022 154 DSKTVSLCVKRLVYTNEN-GEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMF 232 (361)
Q Consensus 154 ~~~~l~~~V~~~~~~~~~-~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~ 232 (361)
+.+.++|+|+++.|..+. +..+.|.+|+||+++++|+.|.|.||+|.+|.++.+..+++||||||||||||++|+++++
T Consensus 92 ~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~ 171 (304)
T 2bmw_A 92 DDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMF 171 (304)
T ss_dssp SSSEEEEEEECCEECSSSSSSCEECHHHHHHHTCCTTCEEEEEEEECSSSCCCSCTTCEEEEEEEGGGHHHHHHHHHHHH
T ss_pred CCCEEEEEEEEEEeeccccCcCCCcchhhHHhcCCCCCEEEEEeccCCceeCCCCCCCCEEEEecCccHHHHHHHHHHHH
Confidence 368999999987665422 2335799999999999999999999999988777556689999999999999999999887
Q ss_pred hhccc----ccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHH
Q 043022 233 FEKHE----DYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWEL 308 (361)
Q Consensus 233 ~~~~~----~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~ 308 (361)
..... .....++++||||+|+.+|++|.+||+++.+++++++++++++|++++.|.+.++|+++.+.+..+.+.+.
T Consensus 172 ~~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~l~~~~~~l~~~ 251 (304)
T 2bmw_A 172 KDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQL 251 (304)
T ss_dssp CHHHHHHCTTCCCCSCEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEETTTCBCTTSSBCCHHHHHHHTHHHHHHH
T ss_pred HhhhhhcccccccCCCEEEEEEeCChHhcchHHHHHHHHHhCCCcEEEEEEEcCCCCCCCCCcceehHHHHHhHHHHHHH
Confidence 54311 11113689999999999999999999999988766899999999998778888999999998877777666
Q ss_pred hccCCeEEEEECCcchHHHHHHHHHHHHHccCCCHHHHHHHHHHcCCeeEeeC
Q 043022 309 LKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 309 l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~~~~~~~~~~l~~~~r~~~ev~ 361 (361)
+...+..||+|||++|+++|+++|.++....+..+++++++|+++|||++|||
T Consensus 252 ~~~~~~~vyvCGp~~m~~~v~~~l~~~~~~~g~~~~~~~~~m~~~~ry~~e~~ 304 (304)
T 2bmw_A 252 IKNQKTHTYICGPPPMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVETY 304 (304)
T ss_dssp HTSTTEEEEEEECTTHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTCEEEEEC
T ss_pred hhcCCcEEEEECCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHcCCeEEecC
Confidence 65457899999999999999999999999889999999999999999999999
No 6
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=100.00 E-value=8.9e-47 Score=354.18 Aligned_cols=293 Identities=36% Similarity=0.621 Sum_probs=231.7
Q ss_pred EeeecccCccchhhhcccccccccccccccCCCCeeEEEEeEeeecCCCCCCc---------eEEEEeeCCCc-cccCCC
Q 043022 51 VRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGE---------TWHMVFSTEGE-VPYKEG 120 (361)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---------~~~l~l~~~~~-l~~~pG 120 (361)
++|+..+.++.... .|.+..++.++|++++.++++....+ +++|+|..+.. +.|.||
T Consensus 1 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~V~~~~~lt~~~~~~~~~~~e~~~~~~~l~l~~~~~~~~~~pG 67 (314)
T 2rc5_A 1 MHSLMKPTREPQIN-------------LFKKSNPYKAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDHSAYPYVIG 67 (314)
T ss_dssp ------CCSSCCCC-------------SBBTTBCEEEEEEEEEECSCCTTSSSCCSSSCCCCEEEEEEECCTTTCCCCTT
T ss_pred CCccccCccccccC-------------CCCCCCCEEEEEEEeEEcCCccccccccccccCceEEEEEEeCCCCcCcccCC
Confidence 35666666665542 45566789999999999999866556 99999998874 889999
Q ss_pred cEEEEecCCCCCCCCC-------CCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCce-ecCccchhhhcCCCCCEE
Q 043022 121 QSIGVIADGVDKNAKP-------HKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEI-VKGVCSNFLCDLKPGAEV 192 (361)
Q Consensus 121 Q~v~l~~~~~~~~~~~-------~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~-~~G~~S~~L~~l~~G~~v 192 (361)
||+.|.+++...++.+ +++|+|||+|.|..+..+.+.++|+|++++|..+.+.. +.|.+|+||+++++|+.|
T Consensus 68 Q~v~l~~~~~~~~g~~~~~~~~~~~~R~ySi~s~p~~~~~~~~~l~l~vk~~~~~~~~g~~~~~G~~S~~L~~l~~Gd~v 147 (314)
T 2rc5_A 68 QSGGVIPPGEDPEKKAKGLADVGYTVRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCDLKPGDEV 147 (314)
T ss_dssp CEEEEECSSBCHHHHHTTCSCCBCCCEEEECCSCTTCGGGCCCEEEEEEECCBCC--CCSCSSBCHHHHHHHTCCTTCEE
T ss_pred CEEEEECCCCccccCccchhhcCCCceeeeccCCccccCCCCCEEEEEEEEEeecCCCCCcCCCcchHHHHhcCCCcCEE
Confidence 9999998764221212 46899999999851100367999999997544332222 368999999999999999
Q ss_pred EEEccCCCCcCCCC-CCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCC
Q 043022 193 KITGPVGKEMLMPR-DPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAP 271 (361)
Q Consensus 193 ~i~gP~G~~~~~~~-~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~ 271 (361)
.|.||+|.+|.++. +..+++||||||||||||++|++++...... ...++++||||+|+.+|++|.+||+++.++++
T Consensus 148 ~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~l~~~~~~--~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~ 225 (314)
T 2rc5_A 148 TMTGPSGKKFLLPNTDFSGDIMFLATGTGIAPFIGMSEELLEHKLI--KFTGNITLVYGAPYSDELVMMDYLKGLESKHK 225 (314)
T ss_dssp EEEEEECSSSCCCSSCBCSCEEEEEEGGGGHHHHHHHHHHHTTCSS--CBCSCEEEEEEESSGGGSCSHHHHHHHHHHHS
T ss_pred EEEeccCCceeCCCCCCCCCEEEEECCccHHHHHHHHHHHHHhccc--CCCCcEEEEEEeCCHHHHhHHHHHHHHHHhCC
Confidence 99999999887764 4568999999999999999999998764311 11368999999999999999999999988777
Q ss_pred CceEEEEEecCCcccC-CCCeeEecchHHHhHHHHHHHhccCCeEEEEE-CCcchHHHHHHHHHHHHHccCCCHHHHHHH
Q 043022 272 ENFRLDFAVSREQKNE-KGEKMYIQTRMAEYANELWELLKKDNTYVYMC-GLRGMEKGIDDIMVSLAANDGIDWLDYKKQ 349 (361)
Q Consensus 272 ~~~~~~~~~s~~~~~~-~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvC-Gp~~m~~~v~~~L~~~g~~~~~~~~~~~~~ 349 (361)
++++++++|++++.| .|.++||++.+.+..+.+.+.+...+.. |+| ||++|++++++.|.+++. .++++|.|..+
T Consensus 226 -~~~~~~~~s~~~~~~~~g~~~~v~~~l~~~~~~l~~~~~~~~~~-yvCGGp~~m~~~v~~~L~~~g~-~~i~~e~f~~~ 302 (314)
T 2rc5_A 226 -NFKLITAISREEKNSFDGGRMYISHRVREQAEAVKKILNGGGRF-YICGGPKGMEKGVIEEIQKISG-NTGTYEEFKHH 302 (314)
T ss_dssp -SEEEEEEETTTCBCTTTSSBCCHHHHHHHTHHHHHHHHHHTCEE-EEEESSTTTHHHHHHHHHHHHT-CCSCHHHHHHH
T ss_pred -cEEEEEEECCCCCcccCCCceehhHHHHHhHHHHHHHhhcCCeE-EEeCCcHHHHHHHHHHHHHHHh-ccchHHHHHHH
Confidence 999999999986554 6788999999988766665555323444 999 999999999999999988 67999999999
Q ss_pred HHHcCCeeEeeC
Q 043022 350 LKKSEQWNVEVY 361 (361)
Q Consensus 350 l~~~~r~~~ev~ 361 (361)
|+++|||++|+|
T Consensus 303 l~~~gr~~~e~~ 314 (314)
T 2rc5_A 303 LEGAHQLFVETY 314 (314)
T ss_dssp HHHTTCEEEEEC
T ss_pred HHHCCCEEEecC
Confidence 999999999999
No 7
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=100.00 E-value=2e-47 Score=372.42 Aligned_cols=303 Identities=25% Similarity=0.408 Sum_probs=231.6
Q ss_pred ceecCCCcccccccceeeeeeec--cceeEEEeeecccCccchhh--hccccccccc-ccccccCCCCeeEEEEeEeeec
Q 043022 22 TSIISPDRITFRKVPFYYKDVST--GGRVVSVRAQVTTEAPAKVE--KESKKMEEGV-IVNKFKPKTPYIGRCLLNTKIT 96 (361)
Q Consensus 22 ~~~p~p~~~t~~~~~~~y~di~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~ 96 (361)
.+.|||+|+|++++|++|+||++ +|+++..+++++++...+.. .+.....++. ....|.-. -.-+++++-..-
T Consensus 138 ~~~p~~~~~tl~~~l~~~~di~~~p~~~~l~~la~~a~~~~ek~~L~~l~~~~~~~~~~~~~~~~~--~~~~ildvL~~f 215 (458)
T 3qfs_A 138 KKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVE--ARRHILAILQDC 215 (458)
T ss_dssp CCCSSSSSEEHHHHHHHTBCCSSCCCHHHHHHHGGGBCSHHHHHHHHHHHSCSHHHHHHHHHHTTT--TTCCHHHHHHHS
T ss_pred cCCCCCCCeeHHHHHHhcEeccCCCCHHHHHHHHHHcCCHHHHHHHHHHhccCcccHHHHHHHHhh--cCCCHHHHHHhC
Confidence 45689999999999999999999 78999999999998877663 2222111110 00111110 000111111111
Q ss_pred CCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCceec
Q 043022 97 GDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVK 176 (361)
Q Consensus 97 ~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~ 176 (361)
| .....+++++.+.. ++++|+|||+|+|.. +++.++|+|+.+.|++..++.+.
T Consensus 216 ---------------p-s~~~p~~~ll~~lp--------~l~pR~YSIsSsp~~---~~~~i~ltV~vv~~~~~~~r~~~ 268 (458)
T 3qfs_A 216 ---------------P-SLRPPIDHLCELLP--------RLQARYYSIASSSKV---HPNSVHICAVVVEYETKAGRINK 268 (458)
T ss_dssp ---------------T-TBCCCHHHHHHHSC--------BCCCEEEECCSCTTT---CTTEEEEEEECCEEECTTSCEEE
T ss_pred ---------------C-ccCCCHHHHHhhCC--------CCcceeEeeccCccc---CCCEEEEEEEEEEecCCCCCCCC
Confidence 1 11122233333332 568999999999964 47899999999988887788899
Q ss_pred CccchhhhcCCCCC------EEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEe
Q 043022 177 GVCSNFLCDLKPGA------EVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLG 250 (361)
Q Consensus 177 G~~S~~L~~l~~G~------~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g 250 (361)
|.+|+||+++.+|+ .|.+.+|.|. |.+|.+..+|+||||||||||||++|++++......+ ...++++||||
T Consensus 269 G~~S~~L~~l~~gg~~~~~~~v~v~~p~g~-F~lp~~~~~piImIggGTGIAPfrs~lq~r~~l~~~g-~~~~~~~Lf~G 346 (458)
T 3qfs_A 269 GVATNWLRAKEPVGENGGRALVPMFVRKSQ-FRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQG-KEVGETLLYYG 346 (458)
T ss_dssp CHHHHHHHTCCSSCSSCCCCEEEEEEECCS-CCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHT-CCCCCEEEEEE
T ss_pred CchhHHHHhhccCCccCCceEEEEEecCCC-cccCCCCCCceEEEcCCcchhhHHHHHHHHHHHHhcC-CCCCCEEEEEE
Confidence 99999999977654 6999999995 6777667789999999999999999998754211110 01368999999
Q ss_pred ccCC-cccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCc-chHHHH
Q 043022 251 VPTS-SSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLR-GMEKGI 328 (361)
Q Consensus 251 ~r~~-~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~-~m~~~v 328 (361)
+|+. +|++|.+||++|.+++. .+++++++||++. .++|||+++.+..+++++++. +++.||||||+ .|+++|
T Consensus 347 ~R~~~~D~ly~dEl~~l~~~g~-l~~l~~a~SRd~~----~k~yVqd~l~~~~~~l~~~l~-~~~~vYvCGp~~~M~~~V 420 (458)
T 3qfs_A 347 CRRSDEDYLYREELAQFHRDGA-LTQLNVAFSREQS----HKVYVQHLLKQDREHLWKLIE-GGAHIYVCGDARNMARDV 420 (458)
T ss_dssp ESCTTTSCTTHHHHHHHHHHTS-SSEEEEEETTSSS----SCCCHHHHHHHTHHHHHHHHH-TTCEEEEEEETTTHHHHH
T ss_pred eCCchHhhhHHHHHHHHHHcCC-CCEEEEEEECCCC----CcccHhHHHHHhHHHHHHHhc-CCCEEEEECCCHHHHHHH
Confidence 9997 69999999999998865 6699999999864 789999999998888888886 68999999996 799999
Q ss_pred HHHHHHHHHccC----CCHHHHHHHHHHcCCeeEeeC
Q 043022 329 DDIMVSLAANDG----IDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 329 ~~~L~~~g~~~~----~~~~~~~~~l~~~~r~~~ev~ 361 (361)
+++|.++..+.+ ..+++|+++|+++|||++|||
T Consensus 421 ~~~L~~i~~~~g~~~~~~A~~~~~~l~~~~RY~~Dvw 457 (458)
T 3qfs_A 421 QNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 457 (458)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeEEEec
Confidence 999999988765 568999999999999999999
No 8
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=100.00 E-value=8.9e-48 Score=382.53 Aligned_cols=310 Identities=19% Similarity=0.293 Sum_probs=230.7
Q ss_pred cceecCCCcccccccceeeeeeec--cceeEEEeeecccCccchhhh--cccccccccccccccCCCCeeEEEEeEeeec
Q 043022 21 RTSIISPDRITFRKVPFYYKDVST--GGRVVSVRAQVTTEAPAKVEK--ESKKMEEGVIVNKFKPKTPYIGRCLLNTKIT 96 (361)
Q Consensus 21 ~~~~p~p~~~t~~~~~~~y~di~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 96 (361)
..|.|+|.|||++++|++|+||++ +++++..+++++++...+... +....+.+. ...|... -..+++++-..
T Consensus 196 ~~p~~~p~~~tl~~~L~~~lDi~~~p~~~~l~~la~~a~d~~ek~~L~~l~s~~~~~~-~~~~~~~--~~~~lldvL~~- 271 (539)
T 2qtl_A 196 TLPQHIPAGCSLQFIFTWCLEIRAIPKKAFLRALVDYTSDSAEKRRLQELCSKQGAAD-YSRFVRD--ACACLLDLLLA- 271 (539)
T ss_dssp CCCTTSCTTCBHHHHHHHTBCTTSCCCHHHHHHHHTTBCSHHHHHHHHHHHSSTTHHH-HHHHTTT--TTCCHHHHHHH-
T ss_pred cCCCCCCCcccHHHHHHHHhhhcCCCCHHHHHHHHHHcCCHHHHHHHHHHhChhhHHH-HHHHHhh--cCCCHHHHHHh-
Confidence 345678899999999999999999 899999999999998877632 222111100 0011110 00011111111
Q ss_pred CCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEec--CCCce
Q 043022 97 GDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN--ENGEI 174 (361)
Q Consensus 97 ~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~--~~~~~ 174 (361)
.| ... .|+|++...++ ++++|+|||+|+|.. +++.++|+|+++.|+. ..++.
T Consensus 272 --------------fp-s~~-~p~~~ll~~lp-------~l~~R~YSIsSsp~~---~~~~i~ltV~~v~~~~~~~~~~~ 325 (539)
T 2qtl_A 272 --------------FP-SCQ-PPLSLLLEHLP-------KLQPRPYSCASSSLF---HPGKLHFVFNIVEFLSTATTEVL 325 (539)
T ss_dssp --------------ST-TBC-CCHHHHHHHSC-------BCCCEEEECCSCTTT---STTEEEEEEECCEEECSCSSCSE
T ss_pred --------------CC-CcC-CCHHHHHHhCc-------CCcceEEeecCCccC---CCCEEEEEEEEEEeccCCCCCcC
Confidence 11 011 23454444454 447999999999853 4789999999998854 34566
Q ss_pred ecCccchhhhcC-----------CCCC-------EEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcc
Q 043022 175 VKGVCSNFLCDL-----------KPGA-------EVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKH 236 (361)
Q Consensus 175 ~~G~~S~~L~~l-----------~~G~-------~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~ 236 (361)
+.|.+|+||+++ ++|+ .|.|.+|.|+.|.++.+..+|+||||||||||||++|++++.....
T Consensus 326 ~~G~~S~~L~~l~~~~~~~~~~~~~Gd~~~~~~~~V~v~~p~g~~F~Lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~ 405 (539)
T 2qtl_A 326 RKGVCTGWLALLVASVLQPNIHASHEDSGKALAPKISIFPRTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQE 405 (539)
T ss_dssp EECHHHHHHHHHTTTTC--------------CCCEEEEEECSCCCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHH
T ss_pred CCCchhhHHHHhhhhhccccccCCCCCccccCceEEEEEeeeCCCccCCccCCCCEEEEEcCccHHHHHHHHHHHHHHHh
Confidence 889999999985 8999 9999999986678887777899999999999999999988643221
Q ss_pred cc-cccCCeEEEEEeccCC-cccccHHHHHHHHHhCCCceEEEEEecCCcc--cCCCCeeEecchHHHhHHHHHHHhccC
Q 043022 237 ED-YKFNGLAWLFLGVPTS-SSLLYKEEFEKMKEKAPENFRLDFAVSREQK--NEKGEKMYIQTRMAEYANELWELLKKD 312 (361)
Q Consensus 237 ~~-~~~~~~i~L~~g~r~~-~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~--~~~g~~~~v~~~l~~~~~~~~~~l~~~ 312 (361)
.+ ....++++||||+|+. .|++|.+||++|.+.+. ++++++++||++. .|.+.++|||+.|.+..+++++++..+
T Consensus 406 ~~~~~~~~~v~LffG~R~~~~D~ly~dEL~~~~~~g~-~~~l~~afSRd~~~~~~~g~k~yVqd~l~e~~~~l~~~l~~~ 484 (539)
T 2qtl_A 406 QHPDGNFGAMWLFFGCRHKDRDYLFRKELRHFLKHGI-LTHLKVSFSRDAPVGEEEAPAKYVQDNIQLHGQQVARILLQE 484 (539)
T ss_dssp HCTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTS-SCEEEEEESSSCC------CCCSHHHHHHHTHHHHHHHHHHS
T ss_pred ccccCCCCCEEEEEEECCcchhhHHHHHHHHHHHhCC-CcEEEEEEccCCCccccCCCccchhHHHHHhHHHHHHhhccC
Confidence 10 0114789999999999 69999999999998876 7899999999864 366789999999999998888888335
Q ss_pred CeEEEEECCc-chHHHHHHHHHHHHHccC----CCHHHHHHHHHHcCCeeEeeC
Q 043022 313 NTYVYMCGLR-GMEKGIDDIMVSLAANDG----IDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 313 ~~~vyvCGp~-~m~~~v~~~L~~~g~~~~----~~~~~~~~~l~~~~r~~~ev~ 361 (361)
+++||||||+ .|+++|.++|.++..+.+ ..+++|+++|+++|||++|||
T Consensus 485 ~a~vYVCGp~~~M~~~V~~~L~~i~~~~~~~~~~~A~~~l~~l~~~~RY~~Dvw 538 (539)
T 2qtl_A 485 NGHIYVCGDAKNMAKDVHDALVQIISKEVGVEKLEAMKTLATLKEEKRYLQDIW 538 (539)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CcEEEEECCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcEEEEcC
Confidence 8899999998 999999999999887754 568899999999999999999
No 9
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=100.00 E-value=2.3e-44 Score=344.25 Aligned_cols=269 Identities=30% Similarity=0.555 Sum_probs=232.0
Q ss_pred cccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCCC-----------CC------------
Q 043022 78 KFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGVD-----------KN------------ 133 (361)
Q Consensus 78 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~~-----------~~------------ 133 (361)
.|....++.++|++++++++.....++++++|+.+. .+.|.||+++.|.+.+.. .+
T Consensus 5 ~~~~~~~~~a~v~~~~~lt~~~~~~~~~hi~~~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~~~~~v~~~~~~~ 84 (374)
T 1ddg_A 5 PYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVEGKTL 84 (374)
T ss_dssp CCBTTBCEEEEEEEEEECSCTTCSSEEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCSCSEEEETTEEE
T ss_pred CCCCCCCEEEEEEEEEEeCCCCCCceEEEEEEEcCCCCcccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCceEEECCCCc
Confidence 456677899999999999998888899999999854 689999999999987621 00
Q ss_pred ----------------------------------------------------------------------CCCCCceecc
Q 043022 134 ----------------------------------------------------------------------AKPHKLRLYS 143 (361)
Q Consensus 134 ----------------------------------------------------------------------~~~~~~R~yS 143 (361)
..++++|+||
T Consensus 85 tl~~~l~~~~di~~p~~~~l~~la~~~~~~~L~~l~~~~~~~~~~~~~~~~~~vl~~~p~~~~~Gq~v~l~~~~~~R~YS 164 (374)
T 1ddg_A 85 PLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYS 164 (374)
T ss_dssp EHHHHHHHHBCCSCCCHHHHHHHHHHHTCTTTGGGTTCTHHHHHHHHHSCHHHHHHHSCCCCCHHHHHHHSCBCCCEEEE
T ss_pred cHHHHHHhcccCCCCCHHHHHHHHHHCCCHHHHHHhcChHHHHHHHcCCCHHHHHHHCCCCCCHHHHHhhccCCCCccce
Confidence 0134789999
Q ss_pred cccCCCCCCCCCcEEEEEEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchh
Q 043022 144 IASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIA 222 (361)
Q Consensus 144 ias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGia 222 (361)
|+|+|.. +++.++|+|+++.|++. ++.++|.+|+||++ +++|+.|.+.||.++.|.++.+..+|+||||||||||
T Consensus 165 IaSsp~~---~~~~i~l~V~~v~~~~~-~~~~~G~~S~~L~~~l~~Gd~v~v~~~~~g~F~lp~~~~~piimIa~GtGIA 240 (374)
T 1ddg_A 165 IASSQAE---VENEVHVTVGVVRYDVE-GRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIA 240 (374)
T ss_dssp BCCCTTT---SCSEEEEEEEECEEEET-TEEEECHHHHHHHHSCCSSCEEEEEEECCTTSCCCSSTTSCEEEECCGGGGH
T ss_pred ecCCCCC---CCCEEEEEEEEEEeecC-CCCCCCCchHHHHhcCCCCCEEEEEEeeCCCccCCCCCCCCEEEEECCccHH
Confidence 9999863 37899999999988765 66678999999999 9999999999966655777766778999999999999
Q ss_pred hHHHHHHHHHhhcccccccCCeEEEEEeccCC-cccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHh
Q 043022 223 PFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTS-SSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEY 301 (361)
Q Consensus 223 P~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~-~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~ 301 (361)
||++|++++...+. .++++||||+|+. +|++|.+||++|.+++. ++++++++|+++. .++|||+++.+.
T Consensus 241 P~~s~l~~~~~~~~-----~~~~~L~~G~R~~~~d~ly~~El~~~~~~~~-~~~l~~a~Srd~~----~k~yVq~~l~~~ 310 (374)
T 1ddg_A 241 PFRAFMQQRAADEA-----PGKNWLFFGNPHFTEDFLYQVEWQRYVKEGV-LTRIDLAWSRDQK----EKVYVQDKLREQ 310 (374)
T ss_dssp HHHHHHHHHHHHTC-----CSCEEEEEEESCHHHHCTTHHHHHHHHHTTS-CCEEEEEETTSSS----SCCCHHHHHHHT
T ss_pred HHHHHHHHHHhcCC-----CCCEEEEEEeCCchhhhhHHHHHHHHHHhCC-CcEEEEEEecCCC----CCccHHHHHHHh
Confidence 99999998876542 3789999999998 69999999999998876 7899999999864 678999999988
Q ss_pred HHHHHHHhccCCeEEEEEC-CcchHHHHHHHHHHHHHccC----CCHHHHHHHHHHcCCeeEeeC
Q 043022 302 ANELWELLKKDNTYVYMCG-LRGMEKGIDDIMVSLAANDG----IDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 302 ~~~~~~~l~~~~~~vyvCG-p~~m~~~v~~~L~~~g~~~~----~~~~~~~~~l~~~~r~~~ev~ 361 (361)
.+++++++. +++.||+|| |+.|+++|.++|.++..+.+ ..+++|+++|+++|||++|||
T Consensus 311 ~~~l~~~l~-~~~~vYvCG~p~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dv~ 374 (374)
T 1ddg_A 311 GAELWRWIN-DGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 374 (374)
T ss_dssp HHHHHHHHH-TTCEEEEEECTTTHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHh-CCcEEEEECCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEecC
Confidence 888888876 589999999 88999999999999998875 568899999999999999999
No 10
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=100.00 E-value=1.7e-44 Score=338.70 Aligned_cols=274 Identities=28% Similarity=0.496 Sum_probs=218.1
Q ss_pred ccccccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCC------------------
Q 043022 71 EEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDK------------------ 132 (361)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~------------------ 132 (361)
+++...+.|.|..++.|+|+++++++....+.++++|+|+.++.++|.||||+.|.+++.+.
T Consensus 2 ~~~~~~~~~~~~~p~~~~v~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~GQ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (316)
T 3jqq_A 2 EENNFINLYTVKNPLKCKIVDKINLVRPNSPNEVYHLEINHNGLFKYLEGHTCGIIPYYNELDNNPNNQINKDHNIINTT 81 (316)
T ss_dssp ---CCBTSSCSSSCEEEEEEEEEECSCTTCSCCEEEEEEECTTCCCCCTTCEEEECTTCC--------------------
T ss_pred CCCCceeeecCCCCEEEEEEeeEEccCCCCCCceEEEEEeCCCCcceecCcEeEEECCCccccccccccccccccccccc
Confidence 34556789999999999999999999888888899999999989999999999999987641
Q ss_pred ------------CCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecC---CCceecCccchhhhcCCCCCEEEEEcc
Q 043022 133 ------------NAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNE---NGEIVKGVCSNFLCDLKPGAEVKITGP 197 (361)
Q Consensus 133 ------------~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~---~~~~~~G~~S~~L~~l~~G~~v~i~gP 197 (361)
.+....+|+|||+|+|. .+.++|+|+++.|..+ .++.++|.+|+||+++++|+.|.|+||
T Consensus 82 ~~~~h~~~~~~~~~g~~~~R~ySIaS~p~-----~~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP 156 (316)
T 3jqq_A 82 NHTNHNNIALSHIKKQRCARLYSISSSNN-----MENLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKINDDIYLTGA 156 (316)
T ss_dssp ---------------CCCCEEEEBCSCTT-----SSSEEEEEECCBC---------CCBCHHHHHHHTCCTTCEEEEEEE
T ss_pred ccccccccccccCCCcccceeeecccCCC-----CCeEEEEEEEEEecccccccCcCCCCchhHHHhhCCCCCEEEEEec
Confidence 11234799999999984 4789999998765432 223457999999999999999999999
Q ss_pred CCCCcCCCCC---CCCcEEEEecCCchhhHHHHHHHHHhhccc-----ccccCCeEEEEEeccCCcccccHHHHHHHHHh
Q 043022 198 VGKEMLMPRD---PNATVIMLATGTGIAPFRGFLWKMFFEKHE-----DYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEK 269 (361)
Q Consensus 198 ~G~~~~~~~~---~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~-----~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~ 269 (361)
+|. |.++.+ ..+++||||||||||||++|++++...... .....++++||||+|+.++++|.+||++|.++
T Consensus 157 ~G~-f~l~~~~~~~~~~vvlIAgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~ 235 (316)
T 3jqq_A 157 HGY-FNLPNDAIQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNELEYFQKM 235 (316)
T ss_dssp ECC-CCCCTTHHHHTCCEEEEEEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGGGCTTHHHHHHHHHH
T ss_pred CCc-eEcCCcccCCCCcEEEEeCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHHHhhcHHHHHHHHHh
Confidence 998 555544 268999999999999999999998865321 00113789999999999999999999999998
Q ss_pred CCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHccCCCHHHHHHH
Q 043022 270 APENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQ 349 (361)
Q Consensus 270 ~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~~~~~~~~~~ 349 (361)
++++|++++++|++ +.|.+.++||++.+.+..+++++++...+..||+|||++|+++++++|.+.|.-.
T Consensus 236 ~~~~~~~~~~~s~~-~~~~g~~g~V~~~l~~~~~~~~~~l~~~~~~vyvCGP~~m~~~v~~~l~~~G~~~---------- 304 (316)
T 3jqq_A 236 YPNNINIHYVFSYK-QNSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGKKSIRYKVMDILKSHDQFD---------- 304 (316)
T ss_dssp CTTTEEEEEEEGGG-CC---CBCCHHHHHHHTHHHHHHHHHHTCCEEEEEECSTHHHHHHHHHHC----C----------
T ss_pred CCCcEEEEEEECCC-cccCCCccchhHHHHHhHHHHHHhhccCCeEEEEeCCHHHHHHHHHHHHHcCCCc----------
Confidence 87789999999998 5678899999999998877776666445889999999999999999999887311
Q ss_pred HHHcCCeeEeeC
Q 043022 350 LKKSEQWNVEVY 361 (361)
Q Consensus 350 l~~~~r~~~ev~ 361 (361)
.....|++.|+|
T Consensus 305 ~v~~~rih~E~f 316 (316)
T 3jqq_A 305 EKKKKRVHVEVY 316 (316)
T ss_dssp HHHHTTEEEEEC
T ss_pred ccccccEEEEeC
Confidence 134579999987
No 11
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=100.00 E-value=9.3e-47 Score=362.68 Aligned_cols=298 Identities=26% Similarity=0.373 Sum_probs=224.2
Q ss_pred ceecCCCcccccccceeeeeeec--cceeEEEeeecccCccchhhh--cccccccccccccccCCCCeeEEEEeEeeecC
Q 043022 22 TSIISPDRITFRKVPFYYKDVST--GGRVVSVRAQVTTEAPAKVEK--ESKKMEEGVIVNKFKPKTPYIGRCLLNTKITG 97 (361)
Q Consensus 22 ~~~p~p~~~t~~~~~~~y~di~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 97 (361)
..+|+|.|+|++++|++ +||++ +|+++..+++++++++.+.+. +..+++ .....+.+. . +++++-..
T Consensus 81 ~~~p~~~~~tl~~~l~~-~di~~~~~~~~l~~la~~~~~~~~~~~L~~l~~~~~--~~~~~~~~~-~---~~ldvL~~-- 151 (393)
T 4dql_A 81 AHLPLAKTVSVEELLQY-VELQDPVTRTQLRAMAAKTVCPPHKVELEALLEKQA--YKEQVLAKR-L---TMLELLEK-- 151 (393)
T ss_dssp ------CCEEHHHHTTS-BCSSSBCCHHHHHHHHHTCCSHHHHHHHHHTTSHHH--HHHHTTTTT-C---BHHHHHHH--
T ss_pred ccCCCCCcEEHHHHHHh-ccccCCCCHHHHHHHHHhCCCHHHHHHHHHHhCchH--HHHHHhccC-C---CHHHHHHh--
Confidence 46789999999999999 99999 999999999999887766532 222211 000001111 0 11111110
Q ss_pred CCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCC-ceec
Q 043022 98 DDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENG-EIVK 176 (361)
Q Consensus 98 ~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~-~~~~ 176 (361)
.| ...+.+||++.+.+ ++++|+|||+|+|.. +++.++|+|+++++++..+ ..+.
T Consensus 152 -------------fp-s~~~p~~~~l~~lp--------~l~~R~YSIsSsp~~---~~~~i~l~v~vv~~~~~~g~~~~~ 206 (393)
T 4dql_A 152 -------------YP-ACEMKFSEFIALLP--------SIRPRYYSISSSPRV---DEKQASITVSVVSGEAWSGYGEYK 206 (393)
T ss_dssp -------------CT-TCCCCHHHHHHTSC--------BCCCEEEECCSCTTT---CTTEEEEEEECCEEECTTSSSEEE
T ss_pred -------------CC-CCCCCHHHHHHhCC--------CCcceeeeccccccc---cCceEEEEEEEEecccCCCCcccC
Confidence 01 12355677777643 458999999999964 4689999999998765433 2567
Q ss_pred CccchhhhcCCCCCEEE--EEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCC
Q 043022 177 GVCSNFLCDLKPGAEVK--ITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTS 254 (361)
Q Consensus 177 G~~S~~L~~l~~G~~v~--i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~ 254 (361)
|.+|+||+++++|+.|. |.||+|. |.++.+..+|+||||||||||||++|++++......+ ...++++||||+|++
T Consensus 207 G~~S~~L~~l~~Gd~v~v~v~~P~g~-F~lp~~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g-~~~~~v~L~~G~R~~ 284 (393)
T 4dql_A 207 GIASNYLAELQEGDTITCFISTPQSE-FTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQG-QSLGEAHLYFGCRSP 284 (393)
T ss_dssp CHHHHHHHHCCTTCEEEEEEECCSSC-CCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTT-CCCCCEEEEEEESCT
T ss_pred CccchhHHhCCCcCEEEEEEEcCCCC-cccCccCCCCeEEEccCceechHHHHHHHHHHHHhcC-CCCCCEEEEEEECCc
Confidence 99999999999999988 6899996 6667667789999999999999999998753322111 113689999999995
Q ss_pred -cccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCc-chHHHHHHHH
Q 043022 255 -SSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLR-GMEKGIDDIM 332 (361)
Q Consensus 255 -~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~-~m~~~v~~~L 332 (361)
+|++|.+||++|.+. + ++++++++||++.. .++|||+++.+..+++++++. ++++||+|||. .|.++|+++|
T Consensus 285 ~~d~ly~~el~~~~~~-~-~l~l~~a~Sr~~~~---~k~yVq~~l~~~~~~l~~~l~-~~~~vYvCGp~~~M~~~V~~~L 358 (393)
T 4dql_A 285 HEDYLYQEELENAQSE-G-IITLHTAFSRMPNQ---PKTYVQHVMEQDGKKLIELLD-QGAHFYICGDGSQMAPAVEATL 358 (393)
T ss_dssp TTCCTTHHHHHHHHHT-T-SCEEEEEESSCTTS---CCCCHHHHHHHTHHHHHHHHH-TTCEEEEEEETTTHHHHHHHHH
T ss_pred chhhHHHHHHHHHHhC-C-CeEEEEEEeCCCCC---CCcchhhHHHhCHHHHHHHHh-CCcEEEEECCchhhHHHHHHHH
Confidence 699999999999876 3 89999999995432 689999999999888888876 68999999985 7888999999
Q ss_pred HHHHHccC----CCHHHHHHHHHHcCCeeEeeC
Q 043022 333 VSLAANDG----IDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 333 ~~~g~~~~----~~~~~~~~~l~~~~r~~~ev~ 361 (361)
.++..+.+ ..+++|+++|+++|||++|||
T Consensus 359 ~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dv~ 391 (393)
T 4dql_A 359 MKSYADVHQVSEADARLWLQQLEEKGRYAKDVW 391 (393)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 99876543 568999999999999999999
No 12
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=100.00 E-value=1.4e-46 Score=366.47 Aligned_cols=299 Identities=24% Similarity=0.307 Sum_probs=227.4
Q ss_pred eecCCCcccccccceeeeeeec--cceeEEEeeecccCccchhhh--cccccccccccccccCCCCeeEEEEeEeeecCC
Q 043022 23 SIISPDRITFRKVPFYYKDVST--GGRVVSVRAQVTTEAPAKVEK--ESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGD 98 (361)
Q Consensus 23 ~~p~p~~~t~~~~~~~y~di~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 98 (361)
+.|+| |||++++|++|+||++ +++++..+++++++...+... +..++++ . ..|.. .-...
T Consensus 120 ~~~~p-~~tl~~~l~~~~di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~-~--~~~~~--~~~~~---------- 183 (435)
T 1f20_A 120 ESRLP-PCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSKGLQE-Y--EEWKW--GKNPT---------- 183 (435)
T ss_dssp CCSSC-SBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHHHHHHHHHHTTCSHH-H--HHHHH--HHCCC----------
T ss_pred cCCCC-CccHHHHHHhceecCCCCCHHHHHHHHHHCCCHHHHHHHHHhhcCHHH-H--HHHHh--ccCCC----------
Confidence 45788 9999999999999999 899999999999998877632 2222221 0 01100 00001
Q ss_pred CCCCceEEEEeeCCC---ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecC--CCc
Q 043022 99 DAPGETWHMVFSTEG---EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNE--NGE 173 (361)
Q Consensus 99 ~~~~~~~~l~l~~~~---~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~--~~~ 173 (361)
+..+..+.|. ++.+.+|| ++ ++++|+|||+|+|.. +++.++|+|+++.|..+ .++
T Consensus 184 -----i~~vl~~fps~~~p~~~l~~~-----lp-------~l~~R~YSIsSsp~~---~~~~i~l~v~vv~~~~~~g~~~ 243 (435)
T 1f20_A 184 -----MVEVLEEFPSIQMPATLLLTQ-----LS-------LLQPRYYSISSSPDM---YPDEVHLTVAIVSYHTRDGEGP 243 (435)
T ss_dssp -----HHHHHHHSTTBCBCHHHHHHH-----SC-------BCCCEEEECCSCTTT---STTEEEEEEECCEEECGGGTSC
T ss_pred -----HHHHHHhCCcCCCCHHHHHHh-----CC-------CCCCccccccCCccc---CCCeEEEEEEEEEEecCCCCCc
Confidence 1111112221 12232332 33 347999999999863 36899999998877654 345
Q ss_pred eecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccC
Q 043022 174 IVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPT 253 (361)
Q Consensus 174 ~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~ 253 (361)
.+.|.+|+||+++++|+.|.|.||.++.|.++.+..+|+||||||||||||++|++++...........++++||||+|+
T Consensus 244 ~~~G~~S~~L~~l~~Gd~v~v~~~~~g~F~lp~~~~~piilIagGtGIAP~~s~l~~~~~~~~~~~~~~~~~~L~~G~R~ 323 (435)
T 1f20_A 244 VHHGVCSSWLNRIQADDVVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQ 323 (435)
T ss_dssp EEECHHHHHHTTCCTTCEEEEEEECCTTSSCCSCTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESC
T ss_pred ccCCccchhHhhCCCCCEEEEEEecCCCccCCCCCCCCEEEEECCcCcHHHHHHHHHHHHhhhhccCCCCCEEEEEeecc
Confidence 77899999999999999999999554446777666789999999999999999999876532100011478999999999
Q ss_pred Cc-ccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHh-HHHHHHHhccCCeEEEEECCcchHHHHHHH
Q 043022 254 SS-SLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEY-ANELWELLKKDNTYVYMCGLRGMEKGIDDI 331 (361)
Q Consensus 254 ~~-d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~-~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~ 331 (361)
.+ |++|.+||++|.+.+. ++++++++|+++.. .++|||+++.+. .+++++.+..+++.||+|||+.|+++|.++
T Consensus 324 ~~~d~ly~~El~~~~~~~~-~~~l~~a~Sr~~~~---~k~yVq~~l~~~l~~~~~~~l~~~~~~vYvCGp~~M~~~V~~~ 399 (435)
T 1f20_A 324 SKIDHIYREETLQAKNKGV-FRELYTAYSREPDR---PKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDVTMAADVLKA 399 (435)
T ss_dssp TTTSCTTHHHHHHHHHTTS-EEEEEEEESSCTTS---CCCCHHHHHHHHSHHHHHHHHHTSCCEEEEEECHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHcCC-ccEEEEEECCCCCC---CCcchhhHHHhhhHHHHHHHHhcCCcEEEEeCChhHHHHHHHH
Confidence 97 8999999999998776 78999999998642 378999999887 667777663358899999999999999999
Q ss_pred HHHHHHccC----CCHHHHHHHHHHcCCeeEeeC
Q 043022 332 MVSLAANDG----IDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 332 L~~~g~~~~----~~~~~~~~~l~~~~r~~~ev~ 361 (361)
|.+++.+.+ ..+++|+++|+++|||++|||
T Consensus 400 L~~i~~~~~~~~~~~a~~~~~~l~~~~RY~~Dv~ 433 (435)
T 1f20_A 400 IQRIMTQQGKLSEEDAGVFISRLRDDNRYHEDIF 433 (435)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 999998865 568899999999999999999
No 13
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=100.00 E-value=3.3e-47 Score=389.28 Aligned_cols=308 Identities=23% Similarity=0.361 Sum_probs=237.6
Q ss_pred ceecCCCcccccccceeeeeeec--cceeEEEeeecccCccchhhh--cccccccccccccccCCCCeeEEEEeEeeecC
Q 043022 22 TSIISPDRITFRKVPFYYKDVST--GGRVVSVRAQVTTEAPAKVEK--ESKKMEEGVIVNKFKPKTPYIGRCLLNTKITG 97 (361)
Q Consensus 22 ~~~p~p~~~t~~~~~~~y~di~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 97 (361)
.+.|||.|||++++|++|+||++ +|++|..+++++++.+.+... +..++++ . ..|.-... -+++++-..-+
T Consensus 333 ~~~p~p~~~tl~~~l~~~ldi~~~p~~~~l~~la~~a~~~~~k~~L~~l~~~~~~-~--~~~~~~~~--~~i~dvL~~fp 407 (682)
T 2bpo_A 333 VKVPFPTPTTIGAAIKHYLEITGPVSRQLFSSLIQFAPNADVKEKLTLLSKDKDQ-F--AVEITSKY--FNIADALKYLS 407 (682)
T ss_dssp CCCSSCSSEEHHHHHHHTBCCSSCCCHHHHHHHSTTCSSHHHHHHHHHHTTCHHH-H--HHHTGGGT--CCHHHHHHHHH
T ss_pred cCCCCCCCccHHHHHHHhhhccCCCCHHHHHHHHHHCCCHHHHHHHHHhccCHHH-H--HHHHhcCC--CCHHHHHHhcc
Confidence 35689999999999999999999 899999999999998877632 2222221 0 01111000 01111100000
Q ss_pred CCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCC---Cce
Q 043022 98 DDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNEN---GEI 174 (361)
Q Consensus 98 ~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~---~~~ 174 (361)
.+......|+|++...+| ++++|+|||+|+|.. +++.++|+|+++.|+++. ++.
T Consensus 408 -------------~~~~s~~~p~~~l~~~lp-------~l~~R~YSIsSsp~~---~~~~i~ltv~Vv~~~~~~~~~~~~ 464 (682)
T 2bpo_A 408 -------------DGAKWDTVPMQFLVESVP-------QMTPRYYSISSSSLS---EKQTVHVTSIVENFPNPELPDAPP 464 (682)
T ss_dssp -------------TTCCCTTSCHHHHHHHSC-------BCCCEEEEBCSCTTT---CTTEEEEEEECCEECCSSCTTSCC
T ss_pred -------------CcccccCCCHHHHHHhCc-------ccccccccccCCccc---CCCeEEEEEEEEEEecCcccCCcc
Confidence 000112467888777776 448999999999974 468999999988887764 567
Q ss_pred ecCccchhhhcCCC------------CCEEEEEccCCCC-------------cCCCCCCCCcEEEEecCCchhhHHHHHH
Q 043022 175 VKGVCSNFLCDLKP------------GAEVKITGPVGKE-------------MLMPRDPNATVIMLATGTGIAPFRGFLW 229 (361)
Q Consensus 175 ~~G~~S~~L~~l~~------------G~~v~i~gP~G~~-------------~~~~~~~~~~iv~Ia~GtGiaP~~~~l~ 229 (361)
+.|.+|+||+++++ |+.|.|.||+|.+ |.+|.+..+|+||||+|||||||++|++
T Consensus 465 ~~G~~S~~L~~l~~g~~~~~~~~~~~G~~v~i~GP~G~f~~~~v~v~vr~~~F~Lp~~~~~piImIg~GTGIAPfrs~lq 544 (682)
T 2bpo_A 465 VVGVTTNLLRNIQLAQNNVNIAETNLPVHYDLNGPRKLFANYKLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIR 544 (682)
T ss_dssp EECHHHHHHHHHHHHHTTCCTTTSCCCCCCCSSCGGGTTTTTEECEEEECCSCCCCSSTTSCEEEEEEGGGGHHHHHHHH
T ss_pred cCccccHHHHhcccccccccccccccccceeeccCcCcccCceEEEEEecCcccCCCCCCCCEEEEecCcChHHHHHHHH
Confidence 89999999998766 9999999999985 5667666789999999999999999999
Q ss_pred HHHhhccc-----ccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHH
Q 043022 230 KMFFEKHE-----DYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANE 304 (361)
Q Consensus 230 ~~~~~~~~-----~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~ 304 (361)
++...... .....++++||||+|+.+|++|.+||++|..+.+.++++++++||++. +.++|||++|.+..++
T Consensus 545 ~r~~~~~~~~~~~~g~~~~~~~L~fG~R~~~D~ly~dEl~~~~~~~g~~~~l~~afSr~d~---~~k~yVqd~l~e~~~~ 621 (682)
T 2bpo_A 545 ERVAFLESQKKGGNNVSLGKHILFYGSRNTDDFLYQDEWPEYAKKLDGSFEMVVAHSRLPN---TKKVYVQDKLKDYEDQ 621 (682)
T ss_dssp HHHHHHHTCC----CCCCCCEEEEEEESSSSSCTTTTTHHHHHHHHGGGEEEEEEESCCTT---SCCCCHHHHHHHTHHH
T ss_pred HHHHhhcccccccccCCcCCEEEEEecCChhhhhhHHHHHHHHHhcCCceEEEEEECCCCC---CCCcchHHHHHhhHHH
Confidence 87754320 111147899999999999999999999995443338999999999532 3789999999999888
Q ss_pred HHHHhccCCeEEEEECC-cchHHHHHHHHHHHHHccC----CCHHHHHHHHHHcCCeeEeeC
Q 043022 305 LWELLKKDNTYVYMCGL-RGMEKGIDDIMVSLAANDG----IDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 305 ~~~~l~~~~~~vyvCGp-~~m~~~v~~~L~~~g~~~~----~~~~~~~~~l~~~~r~~~ev~ 361 (361)
+++++. +++.|||||| +.|+++|.++|.++..+.+ ..+++|+++|+++|||++|||
T Consensus 622 l~~~l~-~~~~vYvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~Dvw 682 (682)
T 2bpo_A 622 VFEMIN-NGAFIYVCGDAKGMAKGVSTALVGILSRGKSITTDEATELIKMLKTSGRYQEDVW 682 (682)
T ss_dssp HHHHHT-TTCEEEEEECSTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHh-CCcEEEEeCCchHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 888885 6899999999 6999999999999988765 567999999999999999999
No 14
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=100.00 E-value=1.1e-45 Score=374.29 Aligned_cols=303 Identities=25% Similarity=0.403 Sum_probs=233.0
Q ss_pred ceecCCCcccccccceeeeeeec--cceeEEEeeecccCccchhhh--ccccccccc-ccccccCCCCeeEEEEeEeeec
Q 043022 22 TSIISPDRITFRKVPFYYKDVST--GGRVVSVRAQVTTEAPAKVEK--ESKKMEEGV-IVNKFKPKTPYIGRCLLNTKIT 96 (361)
Q Consensus 22 ~~~p~p~~~t~~~~~~~y~di~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~ 96 (361)
.+.|||+|||++++|++|+||++ +|+++..+++++++...+... +..+..++. ....|.- .-.-+++++-...
T Consensus 298 ~~~~~p~~~tl~~~l~~~~di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~--~~~~~i~dvL~~f 375 (618)
T 3qe2_A 298 KKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVV--EARRHILAILQDC 375 (618)
T ss_dssp CCSSSSSSEEHHHHHHHTBCCSSCCCHHHHHHHGGGBCSHHHHHHHHHTTCSSSHHHHHHHHHTT--TTTCCHHHHHHHS
T ss_pred CCCCCCCceEHHHhhhhEeecCCCCcHHHHHHHHHHcCCHHHHHHHHHhhccChhhHHHHHHHHh--hcCCCHHHHHHhC
Confidence 45689999999999999999999 888999999999988777632 221111111 0011111 0001111111111
Q ss_pred CCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCceec
Q 043022 97 GDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVK 176 (361)
Q Consensus 97 ~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~ 176 (361)
+. .. .|.+++.-.++ ++++|+|||+|+|.. +++.++|+|+++.|+++.++.+.
T Consensus 376 ps----------------~~-~p~~~l~~~lp-------~l~pR~YSIsSsp~~---~~~~i~ltv~vv~~~~~~~~~~~ 428 (618)
T 3qe2_A 376 PS----------------LR-PPIDHLCELLP-------RLQARYYSIASSSKV---HPNSVHICAVVVEYETKAGRINK 428 (618)
T ss_dssp TT----------------BC-CCHHHHHHHSC-------BCCCEEEECCSCTTT---CTTEEEEEEECCEEECTTSCEEE
T ss_pred Cc----------------cC-CCHHHHHHhcc-------ccccceeccccCCcC---CCCEEEEEEEEEEEecCCCCCCC
Confidence 11 01 13444333333 568999999999974 57899999999989887788899
Q ss_pred CccchhhhcCCC-CC-----EEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEe
Q 043022 177 GVCSNFLCDLKP-GA-----EVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLG 250 (361)
Q Consensus 177 G~~S~~L~~l~~-G~-----~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g 250 (361)
|.+|+||+++.+ |+ .|.|.+|.|. |.+|.+..+|+||||||||||||++|++++......+. ..++++||||
T Consensus 429 G~~S~~L~~l~~~Gd~~~~~~v~v~~p~g~-F~lp~~~~~piimIg~GtGIAPfrs~l~~r~~~~~~g~-~~~~~~L~~G 506 (618)
T 3qe2_A 429 GVATNWLRAKEPVGENGGRALVPMFVRKSQ-FRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGK-EVGETLLYYG 506 (618)
T ss_dssp CHHHHHHHTCCCC-----CCEEEEEEECCS-CCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTC-CCCCEEEEEE
T ss_pred CcccHHHHhhcccCCCCcceEEEEEEecCc-ccCCCCCCCCeEEEcCCcchhhHHHHHHHHHHHHhcCC-CCCCEEEEEe
Confidence 999999999777 88 9999999995 67776777899999999999999999998764321111 1378999999
Q ss_pred ccCC-cccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCc-chHHHH
Q 043022 251 VPTS-SSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLR-GMEKGI 328 (361)
Q Consensus 251 ~r~~-~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~-~m~~~v 328 (361)
+|+. .|++|.+||++|.+.+. .+++++++||++. .++|||+++.+..+++++++. +++.||||||+ .|+++|
T Consensus 507 ~R~~~~D~ly~~el~~~~~~g~-l~~l~~a~Srd~~----~k~yVqd~l~~~~~~l~~~l~-~~a~vYvCGp~~~M~~~V 580 (618)
T 3qe2_A 507 CRRSDEDYLYREELAQFHRDGA-LTQLNVAFSREQS----HKVYVQHLLKQDREHLWKLIE-GGAHIYVCGDARNMARDV 580 (618)
T ss_dssp ESCTTTSCTTHHHHHHHHHHTS-SSEEEEEETTSSS----SCCCHHHHHHHTHHHHHHHHH-HTCEEEEEEETTTHHHHH
T ss_pred cCCCccccchHHHHHHHHhcCC-CcEEEEEEcCCCC----CCCcHHHHHHHhHHHHHHHHh-CCcEEEEECCchHHHHHH
Confidence 9999 59999999999998864 5699999999864 689999999999888888875 68999999996 999999
Q ss_pred HHHHHHHHHccC----CCHHHHHHHHHHcCCeeEeeC
Q 043022 329 DDIMVSLAANDG----IDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 329 ~~~L~~~g~~~~----~~~~~~~~~l~~~~r~~~ev~ 361 (361)
.++|.++..+++ ..+++|+++|+++|||++|||
T Consensus 581 ~~~L~~i~~~~g~~~~~~a~~~~~~l~~~~RY~~Dv~ 617 (618)
T 3qe2_A 581 QNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 617 (618)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeEEeec
Confidence 999999988765 568899999999999999999
No 15
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=100.00 E-value=1.4e-43 Score=362.48 Aligned_cols=301 Identities=24% Similarity=0.302 Sum_probs=229.2
Q ss_pred ecCCCcccccccceeeeeeec--cceeEEEeeecccCccchhhh--cccccccccccccccCCCCeeEEEEeEeeecCCC
Q 043022 24 IISPDRITFRKVPFYYKDVST--GGRVVSVRAQVTTEAPAKVEK--ESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDD 99 (361)
Q Consensus 24 ~p~p~~~t~~~~~~~y~di~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 99 (361)
.|+| |||++++|++|+||++ +++++..+++++++...+... +..++++.- ...+.+ ..+
T Consensus 342 ~~~p-~~tl~~~l~~~lDi~~~p~~~~l~~la~~a~~~~ek~~L~~l~~~~~~~~-~~~~~~--------------~~~- 404 (688)
T 1tll_A 342 SRLP-PCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSKGLQEYE-EWKWGK--------------NPT- 404 (688)
T ss_dssp CSSC-SBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHHHHHHHHHHTTCSHHHH-HHHHHH--------------CCC-
T ss_pred CCCC-CccHHHHHHhheeCCCCCCHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHH-HHHhhc--------------CCC-
Confidence 4778 9999999999999999 999999999999998877632 222222100 000011 001
Q ss_pred CCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecC--CCceecC
Q 043022 100 APGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNE--NGEIVKG 177 (361)
Q Consensus 100 ~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~--~~~~~~G 177 (361)
+..+..+.|. .. .|+||+...++ ++++|+|||+|+|.. +++.++|+|+++.|..+ .++.+.|
T Consensus 405 ----i~evl~~fps-~~-~p~~~l~~~lp-------~l~~R~YSIsSsp~~---~~~~i~l~V~vv~~~~~~g~~~~~~G 468 (688)
T 1tll_A 405 ----MVEVLEEFPS-IQ-MPATLLLTQLS-------LLQPRYYSISSSPDM---YPDEVHLTVAIVSYHTRDGEGPVHHG 468 (688)
T ss_dssp ----HHHHHHHSTT-BC-CCHHHHHHHSC-------BCCCEEEEBCSCTTT---STTEEEEEEECCEEETGGGTSCEEEC
T ss_pred ----HHHHHHhCCC-cC-CCHHHHHHhCc-------ccceeEEeecCCccc---CCCeEEEEEEEEEEecCCCCCCcCCC
Confidence 2222222221 01 24555555555 347999999999863 36899999998877653 3457789
Q ss_pred ccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCc-c
Q 043022 178 VCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSS-S 256 (361)
Q Consensus 178 ~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~-d 256 (361)
.+|+||+++++|+.|.|.+|.+..|.++.+..+|+||||||||||||++|++++...........++++||||+|+.+ |
T Consensus 469 ~~S~~L~~l~~Gd~v~v~~~p~g~F~lp~~~~~piIlIagGtGIAP~~s~l~~~~~~~~~~~~~~~~v~L~~G~R~~~~D 548 (688)
T 1tll_A 469 VCSSWLNRIQADDVVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKID 548 (688)
T ss_dssp HHHHHHTTCCTTSEEEEEEECCGGGSCCSCTTSCEEEEEEGGGGTTHHHHHHHHHHHHHHSCCCCCCEEEEEEESCTTTT
T ss_pred chhHHHHhCCCCCEEEEEeccCCCcccCcCCCCCEEEEEcCcchHHHHHHHHHHHHhhhhccCCCCCEEEEEEeccchhh
Confidence 999999999999999999955545677766678999999999999999999987654110001147899999999998 8
Q ss_pred cccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHh-HHHHHHHhccCCeEEEEECCcchHHHHHHHHHHH
Q 043022 257 LLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEY-ANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSL 335 (361)
Q Consensus 257 ~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~-~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~ 335 (361)
++|.+||++|.+.+. ++++++++|+++.. .++|||++|.+. .++++..+..++.+||||||+.|+++|.++|.++
T Consensus 549 ~ly~dEL~~~~~~~~-~~~l~~a~Sr~~~~---~k~yVq~~l~~~l~~~l~~~l~~~~~~vYvCGp~~M~~~V~~~L~~i 624 (688)
T 1tll_A 549 HIYREETLQAKNKGV-FRELYTAYSREPDR---PKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDVTMAADVLKAIQRI 624 (688)
T ss_dssp CTTHHHHHHHHHTTS-EEEEEEEESSCTTS---CCCCHHHHHHHSSHHHHHHHHHTSCCEEEEEEEHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCC-ceEEEEEECCCCCC---CccchhhhhHHhHHHHHHHhhccCCcEEEEeCCHHHHHHHHHHHHHH
Confidence 999999999998876 78999999998643 378999999887 6777776633588999999999999999999998
Q ss_pred HHccC----CCHHHHHHHHHHcCCeeEeeC
Q 043022 336 AANDG----IDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 336 g~~~~----~~~~~~~~~l~~~~r~~~ev~ 361 (361)
....+ ..+++|+++|+..+||+.|+|
T Consensus 625 ~~~~gg~~~~~a~~~l~~l~~~~ry~~Evf 654 (688)
T 1tll_A 625 MTQQGKLSEEDAGVFISRLRDDNRYHEDIF 654 (688)
T ss_dssp HHTTTCCCTTHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHcCCCCHHHHHHHHHhhhhcCCEEEEec
Confidence 65543 579999999999999999998
No 16
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=100.00 E-value=4.6e-39 Score=292.05 Aligned_cols=224 Identities=20% Similarity=0.286 Sum_probs=191.5
Q ss_pred cCCCCeeEEEEeEeeecCCCCCCceEEEEeeC-C-C----ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCC
Q 043022 80 KPKTPYIGRCLLNTKITGDDAPGETWHMVFST-E-G----EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFG 153 (361)
Q Consensus 80 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~-~-~----~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~ 153 (361)
.+...+.++|++++.++++ +++|+|.. + . .+.|.||||+.|.+++. ...|+|||+|.|.
T Consensus 6 ~~~~~~~~~V~~~~~~~~~-----~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~------~~~R~ySi~s~~~---- 70 (250)
T 1tvc_A 6 GEVGSFEAEVVGLNWVSSN-----TVQFLLQKRPDECGNRGVKFEPGQFMDLTIPGT------DVSRSYSPANLPN---- 70 (250)
T ss_dssp CCSSEEEEEBCCCEEEETT-----EEEEEECSSTTSSSSSCCSCCSCCEEEECTTSC------SSSEEECCBCCSS----
T ss_pred CCcceEEEEEEEEEEcCCC-----eEEEEEEecCCCCcccccCcCCCcEEEEEeCCC------ccccccccCCCCC----
Confidence 3455788999999999999 99999998 7 5 56799999999998652 2689999999986
Q ss_pred CCcEEEEEEEEeeEecCCCceecCccchhhh-cCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHH
Q 043022 154 DSKTVSLCVKRLVYTNENGEIVKGVCSNFLC-DLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMF 232 (361)
Q Consensus 154 ~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~-~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~ 232 (361)
+.+.++|+|++++ +|.+|+||+ ++++|++|.|.||+|+++..+ +..+++|||||||||||+++|++++.
T Consensus 71 ~~~~l~i~vk~~~---------~G~~s~~l~~~l~~Gd~v~v~gP~G~~~~~~-~~~~~~vliagGtGiaP~~~~l~~l~ 140 (250)
T 1tvc_A 71 PEGRLEFLIRVLP---------EGRFSDYLRNDARVGQVLSVKGPLGVFGLKE-RGMAPRYFVAGGTGLAPVVSMVRQMQ 140 (250)
T ss_dssp SSCCEEEEECCCT---------TSSSHHHHHHHSSSSSEEEEEEEECCCSCCC-CSSSCEEEEEESSTTHHHHHHHHHHH
T ss_pred CCCeEEEEEEECC---------CCCchHHHHhcCCCCCEEEEEcCccccccCc-cCCceEEEEEeccCHHHHHHHHHHHH
Confidence 4689999999876 799999997 699999999999999876543 44579999999999999999999987
Q ss_pred hhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccC
Q 043022 233 FEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKD 312 (361)
Q Consensus 233 ~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~ 312 (361)
..+. ..+++|+|++|+.+|++|.+||++|.++++ ++++++++|+++++|.|.+++|++.+.+...+ .. .
T Consensus 141 ~~~~-----~~~v~l~~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~s~~~~~~~g~~g~v~~~l~~~~~~---~~--~ 209 (250)
T 1tvc_A 141 EWTA-----PNETRIYFGVNTEPELFYIDELKSLERSMR-NLTVKACVWHPSGDWEGEQGSPIDALREDLES---SD--A 209 (250)
T ss_dssp HHTC-----CSCEEEEEECSSSTTCCCHHHHHHHHHHSS-SCEEEECCSSCSSCCSSSSSSSSHHHHHHHHH---SS--S
T ss_pred hcCC-----CceEEEEEEeCCHHHhhhHHHHHHHHHhCC-CeEEEEEeccCCCCcCCccceehHHHHhhhhc---cc--C
Confidence 6531 368999999999999999999999998877 89999999998777888889998877653321 12 4
Q ss_pred CeEEEEECCcchHHHHHHHHHHHHHcc
Q 043022 313 NTYVYMCGLRGMEKGIDDIMVSLAAND 339 (361)
Q Consensus 313 ~~~vyvCGp~~m~~~v~~~L~~~g~~~ 339 (361)
+..+|+|||+.|++++++.|.+.|...
T Consensus 210 ~~~vyvCGp~~m~~~v~~~l~~~G~~~ 236 (250)
T 1tvc_A 210 NPDIYLCGPPGMIDAACELVRSRGIPG 236 (250)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHHCCCC
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCCH
Confidence 779999999999999999999888764
No 17
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=100.00 E-value=1.1e-38 Score=302.18 Aligned_cols=248 Identities=21% Similarity=0.325 Sum_probs=202.4
Q ss_pred ceeEEEeeecccCccchhhhcccccccccccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC---ccccCCCcE
Q 043022 46 GRVVSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG---EVPYKEGQS 122 (361)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~---~l~~~pGQ~ 122 (361)
.++++|+||..+.++.+++....... .-.+...+.++|++++.++++ +++|+|..+. .+.|.||||
T Consensus 76 ~~g~~LaCq~~~~~~~~v~~~~~~~~------~~~~~~~~~~~V~~~~~~~~~-----~~~l~l~~~~~~~~~~~~pGQ~ 144 (338)
T 1krh_A 76 QQGYVLACQCRPTSDAVFQIQASSEV------CKTKIHHFEGTLARVENLSDS-----TITFDIQLDDGQPDIHFLAGQY 144 (338)
T ss_dssp HHTEEETTTCEESSSEEEEESSCTTG------GGCCCEEEEEEEEEEEESSSS-----EEEEEEEECTTCCCCCCCTTCE
T ss_pred hCCeEEEEeCEECCCeEEEEeccccc------ccCCceEEEEEEEEEEEcCCC-----EEEEEEEeCCCCCCCCcCCCCe
Confidence 34679999999998876653111111 012344678999999999999 9999999876 577999999
Q ss_pred EEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCceecCccchhhh-cCCCCCEEEEEccCCCC
Q 043022 123 IGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLC-DLKPGAEVKITGPVGKE 201 (361)
Q Consensus 123 v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~-~l~~G~~v~i~gP~G~~ 201 (361)
+.|.+++. ...|+|||+|.| ..+.++|+|++++ +|.+|+||+ ++++|+.|.|.||+|++
T Consensus 145 v~l~~~~~------~~~R~ySi~s~~-----~~~~l~~~vk~~~---------~G~~S~~L~~~l~~Gd~v~v~gP~G~f 204 (338)
T 1krh_A 145 VNVTLPGT------TETRSYSFSSQP-----GNRLTGFVVRNVP---------QGKMSEYLSVQAKAGDKMSFTGPFGSF 204 (338)
T ss_dssp EEEECTTS------SCEEEEECCSCT-----TCSEEEEEEECCT---------TCHHHHHHHTTCCTTCEEEEEEEECSC
T ss_pred EEEEcCCC------CccccccccCCC-----CCCeEEEEEEEcC---------CCCchhhHhhccCCCCEEEEECCccce
Confidence 99998753 268999999998 3579999999976 799999997 59999999999999997
Q ss_pred cCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEec
Q 043022 202 MLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVS 281 (361)
Q Consensus 202 ~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s 281 (361)
++.+ + .+++|||||||||||+++|++++...+. ..+++|+|++|+.+|++|.++|++|.++++ +++++++++
T Consensus 205 ~~~~-~-~~~~vliagGtGiaP~~s~l~~l~~~~~-----~~~v~l~~~~r~~~d~~~~~el~~l~~~~~-~~~~~~~~s 276 (338)
T 1krh_A 205 YLRD-V-KRPVLMLAGGTGIAPFLSMLQVLEQKGS-----EHPVRLVFGVTQDCDLVALEQLDALQQKLP-WFEYRTVVA 276 (338)
T ss_dssp SCCC-C-SSCEEEEEEGGGHHHHHHHHHHHHHHCC-----SSCEEEEEEESSGGGCCCHHHHHHHHHHCT-TEEEEEEET
T ss_pred EeCC-C-CceEEEEEccccHhHHHHHHHHHHHcCC-----CCeEEEEEEeCCHHHhhhHHHHHHHHHhCC-CeEEEEEEe
Confidence 6543 3 3899999999999999999999886542 368999999999999999999999998888 899999999
Q ss_pred CCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHcc
Q 043022 282 REQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAAND 339 (361)
Q Consensus 282 ~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~ 339 (361)
+++..|. .+++|++.+.+. .+...+..+|+|||+.|++++++.|.+.|...
T Consensus 277 ~~~~~~~-~~g~v~~~l~~~------~~~~~~~~vy~CGp~~m~~~v~~~l~~~G~~~ 327 (338)
T 1krh_A 277 HAESQHE-RKGYVTGHIEYD------WLNGGEVDVYLCGPVPMVEAVRSWLDTQGIQP 327 (338)
T ss_dssp TCCSSSS-EESCSGGGCCGG------GGGGGCSEEEEEEEHHHHHHHHHHHHHHTCCC
T ss_pred cCCCCCC-ccCccCHHHHHh------hcccCCcEEEEECCHHHHHHHHHHHHHcCCCH
Confidence 9766554 678888877631 11113678999999999999999999988764
No 18
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=100.00 E-value=9.8e-39 Score=286.56 Aligned_cols=218 Identities=17% Similarity=0.224 Sum_probs=180.9
Q ss_pred eeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEE
Q 043022 85 YIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKR 164 (361)
Q Consensus 85 ~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~ 164 (361)
+.++|++++.++++ +++++|..++.+.|+||||+.|.+++ ...|+|||+|.|. +.+.++|+|++
T Consensus 3 ~~~~V~~~~~~~~~-----~~~l~l~~~~~~~~~pGq~v~l~~~~-------~~~R~ySi~s~~~----~~~~l~l~i~~ 66 (232)
T 1qfj_A 3 LSCKVTSVEAITDT-----VYRVRIVPDAAFSFRAGQYLMVVMDE-------RDKRPFSMASTPD----EKGFIELHIGA 66 (232)
T ss_dssp EEEEEEEEEESSSS-----CEEEEEEESSCCCCCTTCEEEEESSS-------SCEEEEECCSCTT----STTCEEEEEC-
T ss_pred eEEEEEEEEecCCC-----EEEEEEecCCCCCcCCCCEEEEECCC-------CceeeeecCCCCC----CCCcEEEEEEE
Confidence 57899999999998 99999998877889999999999874 2689999999986 56799999999
Q ss_pred eeEecCCCceecCccchh-hhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCC
Q 043022 165 LVYTNENGEIVKGVCSNF-LCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNG 243 (361)
Q Consensus 165 ~~~~~~~~~~~~G~~S~~-L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~ 243 (361)
++ +|.+|++ +..+++||+|.|.||+|+++..+ +..+++|||||||||||+++|++++...+. ..
T Consensus 67 ~~---------~G~~s~~~~~~l~~Gd~v~v~gP~G~~~~~~-~~~~~~vliagG~GitP~~~~l~~l~~~~~-----~~ 131 (232)
T 1qfj_A 67 SE---------INLYAKAVMDRILKDHQIVVDIPHGEAWLRD-DEERPMILIAGGTGFSYARSILLTALARNP-----NR 131 (232)
T ss_dssp --------------CCHHHHHHHHHHSEEEEEEEECSCCCCS-CSSSCEEEEEETTCHHHHHHHHHHHHHHCT-----TC
T ss_pred cc---------CCchhHHHHHhCCCCCEEEEeCCccceEeCC-CCCCcEEEEEecccHhHHHHHHHHHHhcCC-----CC
Confidence 85 6777776 45599999999999999876543 346899999999999999999999886532 36
Q ss_pred eEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcc
Q 043022 244 LAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRG 323 (361)
Q Consensus 244 ~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~ 323 (361)
+++|+|++|+.+|++|.+||+++..+++ +++++.++++++++|.+.++++++.+.+.. ...++..+|+|||++
T Consensus 132 ~v~l~~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~s~~~~~~~g~~g~v~~~~~~~~------~~~~~~~vyvCGp~~ 204 (232)
T 1qfj_A 132 DITIYWGGREEQHLYDLCELEALSLKHP-GLQVVPVVEQPEAGWRGRTGTVLTAVLQDH------GTLAEHDIYIAGRFE 204 (232)
T ss_dssp CEEEEEEESSGGGCTTHHHHHHHHHHCT-TEEEEEEESSCCTTCCSEESCHHHHHHHHC------SCCTTCEEEEESCHH
T ss_pred cEEEEEeeCCHHHhhhHHHHHHHHHHCC-CeEEEEEEcCCCCCcCCceeeHHHHHHHhc------CCccccEEEEECCHH
Confidence 8999999999999999999999998888 899999999988788888888876665421 122478899999999
Q ss_pred hHHHHHHHH-HHHHHccC
Q 043022 324 MEKGIDDIM-VSLAANDG 340 (361)
Q Consensus 324 m~~~v~~~L-~~~g~~~~ 340 (361)
|++++++.| .+.|....
T Consensus 205 m~~~v~~~l~~~~g~~~~ 222 (232)
T 1qfj_A 205 MAKIARDLFCSERNARED 222 (232)
T ss_dssp HHHHHHHHHHHHSCCCGG
T ss_pred HHHHHHHHHHHHcCCCHH
Confidence 999999999 88877653
No 19
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=100.00 E-value=6.8e-38 Score=283.00 Aligned_cols=228 Identities=21% Similarity=0.270 Sum_probs=188.8
Q ss_pred cCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC---ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCc
Q 043022 80 KPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG---EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSK 156 (361)
Q Consensus 80 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~---~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~ 156 (361)
.|.....++|++++.++++ +++++|..+. .+.|+||||+.|.++..+ ....|+|||+|.+. +.+
T Consensus 7 ~~~~~~~~~v~~~~~~t~~-----~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~g----~~~~R~ysi~s~~~----~~~ 73 (243)
T 2eix_A 7 NPNEYKKFMLREKQIINHN-----TRLFRFNLHHPEDVVGLPIGQHMSVKATVDG----KEIYRPYTPVSSDD----EKG 73 (243)
T ss_dssp CSSSCEEEEEEEEEEEETT-----EEEEEEECSSTTCCCCCCTTCEEEEEEEETT----EEEEEEECCCSCTT----CCS
T ss_pred CCCceEEEEEEEEEEeCCC-----eEEEEEEcCCCCcccCcCCceEEEEEEeeCC----CEEEeeeeecCCCC----CCC
Confidence 4566789999999999999 9999999865 467999999999986321 23689999999986 578
Q ss_pred EEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcc
Q 043022 157 TVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKH 236 (361)
Q Consensus 157 ~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~ 236 (361)
.++|+|++++ +|.+|+||+++++||+|.|.||+|++ .++.+..++++||||||||||+++|++++.....
T Consensus 74 ~~~l~vk~~~---------~G~~S~~l~~l~~Gd~v~v~gP~G~f-~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~~ 143 (243)
T 2eix_A 74 YFDLIIKVYE---------KGQMSQYIDHLNPGDFLQVRGPKGQF-DYKPNMVKEMGMIAGGTGITPMLQVARAIIKNPK 143 (243)
T ss_dssp EEEEEEECCT---------TCHHHHHHHTCCTTCEEEEEEEECSC-CCCTTSSSEEEEEEEGGGHHHHHHHHHHHHTCTT
T ss_pred EEEEEEEEcC---------CCCcchHhhcCCCCCEEEEECCeEEE-EeCCCCCcEEEEEecCccHHHHHHHHHHHHhCCC
Confidence 9999999875 79999999999999999999999984 4443456899999999999999999999875421
Q ss_pred cccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEE
Q 043022 237 EDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYV 316 (361)
Q Consensus 237 ~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~v 316 (361)
. ..+++|+|++|+.+|++|.+||++|.++++ ++++++++++++++|.+.++++++.+.+ ++..... .+..+
T Consensus 144 ~----~~~v~l~~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~s~~~~~~~g~~g~v~~~~l~---~~~~~~~-~~~~v 214 (243)
T 2eix_A 144 E----KTIINLIFANVNEDDILLRTELDDMAKKYS-NFKVYYVLNNPPAGWTGGVGFVSADMIK---QHFSPPS-SDIKV 214 (243)
T ss_dssp C----CCEEEEEEEEEEGGGCTTHHHHHHHHHHCT-TEEEEEEEEECCTTCCSEESSCCHHHHH---HHSCCTT-SSEEE
T ss_pred C----CcEEEEEEEcCCHHHhhHHHHHHHHHHHCC-CeEEEEEeCCCCccccCcCCccCHHHHH---HhcCCCC-CCeEE
Confidence 1 368999999999999999999999998888 9999999998877787788888754321 1111111 46789
Q ss_pred EEECCcchHHHHHHHHHHHHHcc
Q 043022 317 YMCGLRGMEKGIDDIMVSLAAND 339 (361)
Q Consensus 317 yvCGp~~m~~~v~~~L~~~g~~~ 339 (361)
|+|||++|++++++.|.+.|...
T Consensus 215 y~CGp~~m~~~v~~~l~~~G~~~ 237 (243)
T 2eix_A 215 MMCGPPMMNKAMQGHLETLGYTP 237 (243)
T ss_dssp EEESSHHHHHHHHHHHHHHTCCG
T ss_pred EEECCHHHHHHHHHHHHHcCCCH
Confidence 99999999999999999888764
No 20
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=100.00 E-value=1.6e-37 Score=287.93 Aligned_cols=241 Identities=20% Similarity=0.383 Sum_probs=188.6
Q ss_pred CCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC--ccccCCCcEEEEecCCCCC-------------------------C
Q 043022 81 PKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG--EVPYKEGQSIGVIADGVDK-------------------------N 133 (361)
Q Consensus 81 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~--~l~~~pGQ~v~l~~~~~~~-------------------------~ 133 (361)
+...+.++|++++.++++ +++|+|..+. .++|+||||+.|.++.... .
T Consensus 6 ~~~~~~~~V~~~~~~t~~-----~~~l~l~~~~~~~~~~~pGQ~v~l~~p~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 80 (290)
T 2r6h_A 6 GVKEWECEVLSNKNVSTF-----IKEFVVKLPEGETMNFKSGSYAQIKIPKYNIRYADYDIQDRFRGDWDKMDAWSLTCK 80 (290)
T ss_dssp CCCEEEEEEEEEEESSSS-----EEEEEEECSTTCCCCCCTTCEEEEEECSEEEEGGGCCCCTTTHHHHHHTTGGGCEEE
T ss_pred cceEEEEEEEEeeecCCC-----eEEEEEEcCCCCccccCCCceEEEEcccccccccccccchhhccccccccccccccc
Confidence 345678999999999999 9999999875 5789999999999874200 0
Q ss_pred CCCCCceecccccCCCCCCCCCcEEEEEEEEeeE--ecCC----CceecCccchhhhcCCCCCEEEEEccCCCCcCCCCC
Q 043022 134 AKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY--TNEN----GEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRD 207 (361)
Q Consensus 134 ~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~--~~~~----~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~ 207 (361)
......|+|||+|.|. +.+.++|+|+.... .... .+...|.+|+||+++++||+|.|.||+|.++.. +
T Consensus 81 ~~~~~~R~ySi~s~~~----~~~~l~l~v~~~~~~~~~~~~~~~~~~~~G~~S~~l~~l~~Gd~v~v~gP~G~f~~~--~ 154 (290)
T 2r6h_A 81 NEEETVRAYSMANYPA----EGNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKPGDKVMMSGPYGDFHIQ--D 154 (290)
T ss_dssp ECSCEEEEEECCSCTT----CCSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTTCCTTCEEEEEEEECCCCCC--S
T ss_pred CCCCcceeeeccCCCC----CCCEEEEEEEEeccccccccccccccCCCcchhhHHhcCCCCCEEEEEecccCCcCC--C
Confidence 0134689999999986 56899999997310 0000 011279999999999999999999999997643 3
Q ss_pred CCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCC--cc
Q 043022 208 PNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSRE--QK 285 (361)
Q Consensus 208 ~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~--~~ 285 (361)
..+++||||||||||||++|+++++..... ..+++|+|++|+.+|++|.+||+++..+++ ++++++++|++ ++
T Consensus 155 ~~~~~vliagGtGitP~~s~l~~~~~~~~~----~~~v~l~~~~r~~~d~~~~~el~~l~~~~~-~~~~~~~~s~~~~~~ 229 (290)
T 2r6h_A 155 TDAEMLYIGGGAGMAPLRAQILHLFRTLKT----GRKVSYWYGARSKNEIFYEEDFREIEREFP-NFKFHIALSDPQPED 229 (290)
T ss_dssp SSCEEEEEEEGGGHHHHHHHHHHHHHTSCC----CSCEEEEEEESSGGGCCSHHHHHHHHHHCT-TEEEEEEESSCCGGG
T ss_pred CCCeEEEEECccCHHHHHHHHHHHHHhcCC----CCcEEEEEEcCCHHHHHHHHHHHHHHHhCC-CeEEEEEEccCCccc
Confidence 568999999999999999999987764321 368999999999999999999999998887 89999999986 35
Q ss_pred cCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHcc
Q 043022 286 NEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAAND 339 (361)
Q Consensus 286 ~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~ 339 (361)
.|.+.+++|++.+.+.. +.+....++..+|+|||+.|++++++.|.+.|...
T Consensus 230 ~~~g~~g~v~~~~~~~~--l~~~~~~~~~~vyvCGp~~m~~~v~~~l~~~G~~~ 281 (290)
T 2r6h_A 230 NWTGYVGFIHQVIYDNY--LKDHDAPEDIEYYMCGPGPMANAVKGMLENLGVPR 281 (290)
T ss_dssp CCCSCBSCHHHHHHHHT--TTTCSCGGGEEEEEECCHHHHHHHHHHHHHHTCCG
T ss_pred CCCCeeEecCHHHHHhH--HhhccCcCCcEEEEECCHHHHHHHHHHHHHcCCCH
Confidence 67777888877663311 11111113678999999999999999999988764
No 21
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=100.00 E-value=8.3e-38 Score=287.63 Aligned_cols=239 Identities=21% Similarity=0.264 Sum_probs=191.6
Q ss_pred cCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC---ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCc
Q 043022 80 KPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG---EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSK 156 (361)
Q Consensus 80 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~---~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~ 156 (361)
.|.....++|++++.++++ +++++|..+. .+.|.||||+.|.++..+ ....|+|||+|.+. +.+
T Consensus 12 ~~~~~~~~~V~~~~~~~~~-----~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~g----~~~~R~ySi~s~~~----~~~ 78 (275)
T 1umk_A 12 SPDIKYPLRLIDREIISHD-----TRRFRFALPSPQHILGLPVGQHIYLSARIDG----NLVVRPYTPISSDD----DKG 78 (275)
T ss_dssp CTTCCEEEEEEEEEECSSS-----EEEEEEECSSTTCBCCCCTTCEEEEEEEETT----EEEEEEECCSSCTT----CCS
T ss_pred CCCccEEEEEEEEEEcCCC-----eEEEEEEcCCcccccCCCCCcEEEEEEeeCC----cEEEeccccCCccC----CCC
Confidence 4667889999999999999 9999999764 367999999999975322 34689999999986 578
Q ss_pred EEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcC-------CCC--------CCCCcEEEEecCCch
Q 043022 157 TVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEML-------MPR--------DPNATVIMLATGTGI 221 (361)
Q Consensus 157 ~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~-------~~~--------~~~~~iv~Ia~GtGi 221 (361)
.++|+|+++.+........+|.+|+||+++++||.|.|.||+|.+++ ++. ...+++|||||||||
T Consensus 79 ~~~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vliagGtGI 158 (275)
T 1umk_A 79 FVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGI 158 (275)
T ss_dssp EEEEEEECCCSSSBTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEEEEETTEEEECSSTTSCCEEEECSEEEEEEEGGGH
T ss_pred eEEEEEEEeccCcccccCCCChhHHHHhcCCCCCEEEEEcCccceEecCCccccccccccccccccCCceEEEEecCccH
Confidence 99999998732221111236999999999999999999999998633 221 135799999999999
Q ss_pred hhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHh
Q 043022 222 APFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEY 301 (361)
Q Consensus 222 aP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~ 301 (361)
||+++|++++..... ...+++|+|++|+.+|++|.+||++|.++++++++++++++++...|.+.+++|++.+.+
T Consensus 159 aP~~~~l~~l~~~~~----~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~v~~~~l~- 233 (275)
T 1umk_A 159 TPMLQVIRAIMKDPD----DHTVCHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIR- 233 (275)
T ss_dssp HHHHHHHHHHHTCTT----CCCEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEESSCCSSCSSEESSCCHHHHH-
T ss_pred hHHHHHHHHHHhCCC----CCcEEEEEEEcCCHHHhhHHHHHHHHHHhCcCcEEEEEEEcCCCccccCccCccCHHHHH-
Confidence 999999999875421 137899999999999999999999999888767999999999877788888888875422
Q ss_pred HHHHHHHhccCCeEEEEECCcchHH-HHHHHHHHHHHcc
Q 043022 302 ANELWELLKKDNTYVYMCGLRGMEK-GIDDIMVSLAAND 339 (361)
Q Consensus 302 ~~~~~~~l~~~~~~vyvCGp~~m~~-~v~~~L~~~g~~~ 339 (361)
+...... ++..+|+|||+.|++ ++++.|.++|...
T Consensus 234 --~~l~~~~-~~~~vyvCGp~~m~~~~v~~~L~~~G~~~ 269 (275)
T 1umk_A 234 --DHLPPPE-EEPLVLMCGPPPMIQYACLPNLDHVGHPT 269 (275)
T ss_dssp --HHSCCGG-GCCEEEEESCHHHHHHTTHHHHHHHTCCG
T ss_pred --HhcCCCC-CCeEEEEECCHHHHHHHHHHHHHHcCCCH
Confidence 1111111 468999999999999 9999999988764
No 22
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=100.00 E-value=1.6e-37 Score=281.45 Aligned_cols=239 Identities=19% Similarity=0.222 Sum_probs=189.8
Q ss_pred CeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEE
Q 043022 84 PYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVK 163 (361)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~ 163 (361)
...++|++++.++++ +++|+|. +..+.|.||||+.|.++..+ ....|+|||+|.|. ++.++|+|+
T Consensus 4 ~~~~~V~~~~~~~~~-----~~~l~l~-~~~~~~~pGq~v~l~~~~~g----~~~~R~ySi~s~~~-----~~~l~~~v~ 68 (248)
T 1fdr_A 4 WVTGKVTKVQNWTDA-----LFSLTVH-APVLPFTAGQFTKLGLEIDG----ERVQRAYSYVNSPD-----NPDLEFYLV 68 (248)
T ss_dssp EEEEEEEEEEECSSS-----EEEEEEE-CCCCCCCTTCEEEEEECC-------CEEEEEECCSCTT-----CSSEEEEEE
T ss_pred eEEEEEEEEEEcCCC-----EEEEEEe-CCCCCcCCCCcEEEEccCCC----CeeeeeecccCCCC-----CCcEEEEEE
Confidence 567999999999998 9999997 45678999999999987422 34689999999984 478999999
Q ss_pred EeeEecCCCceecCccchhhhcCCCCCEEEEE-ccCCCCcCCCCC-CCCcEEEEecCCchhhHHHHHHHHHhhccccccc
Q 043022 164 RLVYTNENGEIVKGVCSNFLCDLKPGAEVKIT-GPVGKEMLMPRD-PNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKF 241 (361)
Q Consensus 164 ~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~-gP~G~~~~~~~~-~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~ 241 (361)
.++ +|.+|+||+++++||+|.|. ||+|.+ .++.. ..++++||||||||||+++|++++...+.
T Consensus 69 ~~~---------~G~~s~~l~~l~~Gd~v~v~~gP~G~f-~l~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~----- 133 (248)
T 1fdr_A 69 TVP---------DGKLSPRLAALKPGDEVQVVSEAAGFF-VLDEVPHCETLWMLATGTAIGPYLSILRLGKDLDR----- 133 (248)
T ss_dssp CCT---------TCSSHHHHHTCCTTCEEEEESSCBCCC-SGGGSCCCSEEEEEEEGGGGHHHHHHHHHCCSCTT-----
T ss_pred EeC---------CCchhhHHHhCCCcCEEEEecCCccee-EcCCCCCCceEEEEEecccHHHHHHHHHHHHhhCC-----
Confidence 875 79999999999999999999 999984 44333 26899999999999999999998754321
Q ss_pred CCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhH-HHHHHH-hccCCeEEEEE
Q 043022 242 NGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYA-NELWEL-LKKDNTYVYMC 319 (361)
Q Consensus 242 ~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~-~~~~~~-l~~~~~~vyvC 319 (361)
..+++|+|++|+.+|++|.+||+++.+++++++++++++|+++. +.+.++++++.+.+.. ++.... ...++..+|+|
T Consensus 134 ~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~s~~~~-~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vy~C 212 (248)
T 1fdr_A 134 FKNLVLVHAARYAADLSYLPLMQELEKRYEGKLRIQTVVSRETA-AGSLTGRIPALIESGELESTIGLPMNKETSHVMLC 212 (248)
T ss_dssp CSEEEEEEEESSGGGCTTHHHHHHHHHHTTTSEEEEEEESSSCC-TTEEESCHHHHHHTSHHHHHHTSCCCTTTEEEEEE
T ss_pred CCcEEEEEEcCCHHHhhHHHHHHHHHHhCcCcEEEEEEEecCCC-CCCcceeeChHHHhhhHHHhhccCCCccCCEEEEe
Confidence 36899999999999999999999999887669999999998753 2234677777665421 222111 22257899999
Q ss_pred CCcchHHHHHHHH-HHHHHccCCCHHHHHHHHHHcCCeeEeeC
Q 043022 320 GLRGMEKGIDDIM-VSLAANDGIDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 320 Gp~~m~~~v~~~L-~~~g~~~~~~~~~~~~~l~~~~r~~~ev~ 361 (361)
||++|++++++.| .+.|...+ ++...+.|..|-|
T Consensus 213 Gp~~m~~~v~~~l~~~~G~~~~--------~i~~~~~~~~E~~ 247 (248)
T 1fdr_A 213 GNPQMVRDTQQLLKETRQMTKH--------LRRRPGHMTAEHY 247 (248)
T ss_dssp ECHHHHHHHHHHHHHHHCCCBC--------BTTBCCSEEEEEC
T ss_pred CCHHHHHHHHHHHHHHcCCChH--------HcCCCccEEEEec
Confidence 9999999999999 88888764 3344577777765
No 23
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=100.00 E-value=4.7e-38 Score=288.71 Aligned_cols=238 Identities=19% Similarity=0.209 Sum_probs=190.3
Q ss_pred CCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEE
Q 043022 83 TPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCV 162 (361)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V 162 (361)
....++|++++.++++ +++++|..+..+.|+||||+.|.++..+ ....|+|||+|.|. ++.++|+|
T Consensus 18 ~~~~~~V~~~~~~~~~-----~~~~~l~~~~~~~~~pGQ~v~l~~~~~~----~~~~r~ySi~s~~~-----~~~~~~~v 83 (271)
T 4fk8_A 18 KFDTATVLSVHHWTDT-----LFSFTCTRDQALRFNNGEFTMVGLEVDG----KPLTRAYSIVSPNY-----EEHLEFFS 83 (271)
T ss_dssp CEEEEEEEEEEEEETT-----EEEEEECCCTTCCCCTTCEEEEEEEETT----EEEEEEEECCSCTT-----SSSEEEEE
T ss_pred cceeEEEEEEEEcCCC-----EEEEEEEcCCCCCcCCCCEEEEEccCCC----ceeeeeEeccCCCC-----CCcEEEEE
Confidence 4678999999999999 9999999988888999999999987432 23689999999884 56799999
Q ss_pred EEeeEecCCCceecCccchhhhcCCCCCEEEEE-ccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhccccccc
Q 043022 163 KRLVYTNENGEIVKGVCSNFLCDLKPGAEVKIT-GPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKF 241 (361)
Q Consensus 163 ~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~-gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~ 241 (361)
++++ +|.+|++|+++++|+.|.+. ||+|.++..+....++++||||||||||+++|++++...+.
T Consensus 84 ~~~~---------~G~~s~~l~~l~~Gd~v~v~~gP~G~~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~----- 149 (271)
T 4fk8_A 84 IKVQ---------NGPLTSRLQHLKVGDPVLIGKKPTGTLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYER----- 149 (271)
T ss_dssp ECCT---------TCTTHHHHTTCCTTCEEEEESCCBCSCCGGGBCCCSEEEEEECGGGGHHHHHHTTCHHHHHH-----
T ss_pred EEEC---------CCchhhHHhcCCCCCEEEEecCCCcceecCCcCCCCeEEEEECCEEHHHHHHHHHHHHhcCC-----
Confidence 9875 79999999999999999999 99998765432356899999999999999999998765432
Q ss_pred CCeEEEEEeccCCcccccHHHHHHHHHhCC-------CceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHH-----h
Q 043022 242 NGLAWLFLGVPTSSSLLYKEEFEKMKEKAP-------ENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWEL-----L 309 (361)
Q Consensus 242 ~~~i~L~~g~r~~~d~~~~~el~~l~~~~~-------~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~-----l 309 (361)
..+++|+|++|+.+|++|.+||+++.++++ .+++++++++++.. +.++++++.+.+. .+... +
T Consensus 150 ~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~G~v~~~~~~~--~l~~~~~~~~~ 224 (271)
T 4fk8_A 150 FDKVVLTHTCRLKGELAYMDYIKHDLPGHEYLGDVIREKLVYYPTVTREEF---ENEGRITDLIASG--KLFTDLDMPPF 224 (271)
T ss_dssp CSEEEEEECCCSHHHHHHHHHHHTCCTTCTTHHHHHHHHEEEEECC----------CCHHHHHHHHS--HHHHHTTCCCC
T ss_pred CCCEEEEEecCCHHHHhHHHHHHHHHHhCccccccccceEEEEEEecCCcc---ccccccChHHhcc--hhhhhcccccC
Confidence 368999999999999999999999877664 25888888887653 2556676665431 11121 1
Q ss_pred ccCCeEEEEECCcchHHHHHHHHHHHHHccCCCHHHHHHHHHHcCCeeEeeC
Q 043022 310 KKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361 (361)
Q Consensus 310 ~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~~~~~~~~~~l~~~~r~~~ev~ 361 (361)
..++..+|+|||+.|++++++.|.+.|.+.+ ++...|+|+.|.|
T Consensus 225 ~~~~~~v~vCGp~~m~~~v~~~l~~~gv~~~--------~i~~~~~~~~E~y 268 (271)
T 4fk8_A 225 SPEQDRVMLCGSTAMLKDTTELLKKAGLVEG--------KNSAPGHYVIERA 268 (271)
T ss_dssp CTTTEEEEEEECHHHHHHHHHHHHHTTCCBC--------BTTBCBSEEEEES
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHcCCchh--------hcCCCCcEEEEEe
Confidence 2258899999999999999999999998865 4555889999887
No 24
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=100.00 E-value=1.1e-36 Score=279.27 Aligned_cols=239 Identities=17% Similarity=0.232 Sum_probs=184.4
Q ss_pred cCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC---ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCc
Q 043022 80 KPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG---EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSK 156 (361)
Q Consensus 80 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~---~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~ 156 (361)
.|.....++|++++.++++ +++++|..+. .+.|+||||+.|.++..+ ....|+|||+|.+. +.+
T Consensus 8 ~~~~~~~~~v~~~~~~~~~-----~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~g----~~~~R~ySi~s~~~----~~~ 74 (270)
T 2cnd_A 8 NPRGRIHCRLVAKKELSRD-----VRLFRFSLPSPDQVLGLPIGKHIFVCATIEG----KLCMRAYTPTSMVD----EIG 74 (270)
T ss_dssp ---CCEEEEEEEEEEEETT-----EEEEEEECSSTTCCCCCCTTCEEEEEEEETT----EEEEEEECCCSCTT----CCS
T ss_pred CCCceEEEEEEEEEEeCCC-----eEEEEEECCCCccccCCCCCCEEEEEeeeCC----cEEEEeeccCCCcc----CCC
Confidence 4566889999999999999 9999999865 357999999999875322 34689999999986 568
Q ss_pred EEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCC-------cCCCC--CCCCcEEEEecCCchhhHHHH
Q 043022 157 TVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKE-------MLMPR--DPNATVIMLATGTGIAPFRGF 227 (361)
Q Consensus 157 ~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~-------~~~~~--~~~~~iv~Ia~GtGiaP~~~~ 227 (361)
.++|+|+.+.+........+|.+|+||+++++||.|.|.||+|.+ |.++. ...+++|||||||||||+++|
T Consensus 75 ~~~l~vk~~~~~~~~~~~~~G~~s~~l~~l~~Gd~v~v~gP~G~~~~~~~g~f~l~~~~~~~~~~vliagGtGiaP~~~~ 154 (270)
T 2cnd_A 75 HFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGSFVINGKQRNARRLAMICGGSGITPMYQI 154 (270)
T ss_dssp EEEEEEECCCSSCBTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEECCSSSCEEETTEEECCSEEEEEEEGGGHHHHHHH
T ss_pred EEEEEEEEeccCcccccCCCCchhhHHhcCCCCCEEEEECCcccceeccccceeccCCcccCCEEEEEeccccHHHHHHH
Confidence 999999985210000001258999999989999999999999973 44442 245799999999999999999
Q ss_pred HHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecC---CcccCCCCeeEecchHHHhHHH
Q 043022 228 LWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSR---EQKNEKGEKMYIQTRMAEYANE 304 (361)
Q Consensus 228 l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~---~~~~~~g~~~~v~~~l~~~~~~ 304 (361)
++++...... ...+++|+|++|+.+|++|.+||++|.+++++++++++++++ ++++|.+.++++++.+.+.
T Consensus 155 l~~l~~~~~~---~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~v~~~~l~~--- 228 (270)
T 2cnd_A 155 IQAVLRDQPE---DHTEMHLVYANRTEDDILLRDELDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLRE--- 228 (270)
T ss_dssp HHHHHHTTTT---CCCEEEEEEEESCGGGCTTHHHHHHHHHHCTTTEEEEEEESCCSCGGGCCCSEESSCCHHHHHH---
T ss_pred HHHHHhcCCC---CCcEEEEEEEcCCHHHcchHHHHHHHHHHCcCcEEEEEEECCCCCCCCCcccccccCCHHHHHH---
Confidence 9998764211 137899999999999999999999999888767999999987 4566777788888764321
Q ss_pred HHHHhccCCeEEEEECCcchHHH-HHHHHHHHHHc
Q 043022 305 LWELLKKDNTYVYMCGLRGMEKG-IDDIMVSLAAN 338 (361)
Q Consensus 305 ~~~~l~~~~~~vyvCGp~~m~~~-v~~~L~~~g~~ 338 (361)
...... .+..+|+|||++|+++ +++.|.++|..
T Consensus 229 ~l~~~~-~~~~vyvCGp~~m~~~~~~~~L~~~G~~ 262 (270)
T 2cnd_A 229 HVPEGG-DDTLALACGPPPMIQFAISPNLEKMKYD 262 (270)
T ss_dssp HSCCCS-SSEEEEEECCHHHHHTTTHHHHHTTTCC
T ss_pred hcCCCc-CCEEEEEECCHHHHHHHHHHHHHHcCCC
Confidence 111111 3578999999999996 58888877654
No 25
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=7.1e-36 Score=269.71 Aligned_cols=220 Identities=17% Similarity=0.283 Sum_probs=178.0
Q ss_pred CeeEEEEeEeeecCCCCCCceEEEEeeCCC---ccccCCCcEEEEecCCCCCCCCCC-CceecccccCCCCCCCCCcEEE
Q 043022 84 PYIGRCLLNTKITGDDAPGETWHMVFSTEG---EVPYKEGQSIGVIADGVDKNAKPH-KLRLYSIASSALGDFGDSKTVS 159 (361)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~---~l~~~pGQ~v~l~~~~~~~~~~~~-~~R~ySias~p~~~~~~~~~l~ 159 (361)
...++|++++.++++ +++|+|..+. .+.|+||||+.|.++..+. +. +.|+|||+|.|. ++.++
T Consensus 3 ~~~~~V~~~~~~~~~-----~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~---~~~~~R~ySi~s~~~-----~~~~~ 69 (243)
T 4eh1_A 3 GRTFVVREKQVESAY-----VTSFVLVPADGGAVLDYQPGQYIGIEVTPEGS---DYREIRQYSLSHASN-----GREYR 69 (243)
T ss_dssp CEEEEEEEEEECSSS-----EEEEEEEESSCSCCCCCCTTCEEEEEECCSSC---SSCEEEEEEBCSCCC-----SSCEE
T ss_pred cEEEEEEEEEEcCCC-----eEEEEEEeCCCCcCCCcCCCCEEEEEEecCCC---ccccceeeEeccCCC-----CCeEE
Confidence 456899999999999 9999999875 3569999999999875321 22 579999999984 57899
Q ss_pred EEEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccc
Q 043022 160 LCVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHED 238 (361)
Q Consensus 160 ~~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~ 238 (361)
|+|+++. .+...+|.+|+||++ +++|++|.|.||+|.+++. ...+++|||||||||||+++|++++...+.
T Consensus 70 i~vk~~~----~~~~~~G~~S~~l~~~l~~G~~v~v~gP~G~~~~~--~~~~~~vliagGtGitp~~~~l~~l~~~~~-- 141 (243)
T 4eh1_A 70 ISVKREG----VGSDNPGLVSHYLHNNVKVGDSVKLYAPAGDFFYV--ERERPVVLISAGVGATPMQAILHTLAKQNK-- 141 (243)
T ss_dssp EEEECTT----TTSSSCCHHHHHHHHHCCTTCEEEEEEEECSCCCC--CCSSCEEEEEEGGGHHHHHHHHHHHHHTTC--
T ss_pred EEEEEee----cCCCCCCeehhHHHhcCCCCCEEEEEccCcccCcC--CCCCCEEEEEccccHHHHHHHHHHHHHcCC--
Confidence 9999861 001126999999985 9999999999999986543 566899999999999999999999886542
Q ss_pred cccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEE
Q 043022 239 YKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYM 318 (361)
Q Consensus 239 ~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyv 318 (361)
.. ++|+|++|+.+|++|.+||++|.+++ +++++++++++.+.+. ..++++..+. .+..++..||+
T Consensus 142 ---~~-v~l~~~~r~~~~~~~~~el~~l~~~~--~~~~~~~~s~~~~~~~-~~g~~~~~~~--------~~~~~~~~vyv 206 (243)
T 4eh1_A 142 ---SG-VTYLYACNSAKEHTFAQETAQLIAQQ--GWMQQVWYRDESADDV-LQGEMQLAEL--------ILPIEDGDFYL 206 (243)
T ss_dssp ---CS-EEEEEEESSGGGCTTHHHHHHHHHHH--TCEEEEEESSCCCTTC-EESSCCCTTS--------CCCTTTCEEEE
T ss_pred ---Ce-EEEEEEeCChhhhhHHHHHHHHHHhC--CeEEEEEEccCCCccc-ccCCccHHHe--------eccCCCcEEEE
Confidence 13 99999999999999999999998876 8899999988755443 4555554433 12225789999
Q ss_pred ECCcchHHHHHHHHHHHHHcc
Q 043022 319 CGLRGMEKGIDDIMVSLAAND 339 (361)
Q Consensus 319 CGp~~m~~~v~~~L~~~g~~~ 339 (361)
|||+.|++++++.|.+.|...
T Consensus 207 CGp~~m~~~v~~~l~~~g~~~ 227 (243)
T 4eh1_A 207 CGPIGFMQYVVKQLLALGVDK 227 (243)
T ss_dssp EECHHHHHHHHHHHHHHTCCG
T ss_pred ECCHHHHHHHHHHHHHcCCCH
Confidence 999999999999999988764
No 26
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=100.00 E-value=3.2e-36 Score=276.76 Aligned_cols=229 Identities=18% Similarity=0.242 Sum_probs=182.6
Q ss_pred CCCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEE
Q 043022 82 KTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLC 161 (361)
Q Consensus 82 ~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~ 161 (361)
..+..++|++++.++++ +++|+|..+..+.|.||||+.|.++..+ + ....|+|||+|.|. ++.++|+
T Consensus 14 ~~~~~~~V~~~~~~~~~-----~~~l~l~~~~~~~~~pGQ~v~l~~~~~~--g-~~~~R~ySi~s~~~-----~~~~~l~ 80 (272)
T 2bgi_A 14 VLPDAQTVTSVRHWTDT-----LFSFRVTRPQTLRFRSGEFVMIGLLDDN--G-KPIMRAYSIASPAW-----DEELEFY 80 (272)
T ss_dssp --CEEEEEEEEEEEETT-----EEEEEEECCTTCCCCTTCEEEEEEECTT--S-CEEEEEEECCSCTT-----CSEEEEE
T ss_pred EEeEEEEEEEEEEcCCC-----EEEEEEeCCCCCccCCCCEEEEEeccCC--C-CeeeeeeeeccCCC-----CCeEEEE
Confidence 34578999999999998 9999999988788999999999987421 1 33689999999984 4799999
Q ss_pred EEEeeEecCCCceecCccchhhhcCCCCCEEEEE-ccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccc
Q 043022 162 VKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKIT-GPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYK 240 (361)
Q Consensus 162 V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~-gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~ 240 (361)
|++++ +|.+|+||+++++||.|.|. ||+|.+.+.+....++++||||||||||+++|++++...+.
T Consensus 81 v~~~~---------~G~~s~~l~~l~~Gd~v~v~~gP~G~f~~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~~---- 147 (272)
T 2bgi_A 81 SIKVP---------DGPLTSRLQHIKVGEQIILRPKPVGTLVIDALLPGKRLWFLATGTGIAPFASLMREPEAYEK---- 147 (272)
T ss_dssp EECCT---------TCTTHHHHTTCCTTCEEEEEEEEECSCCGGGBCCCSEEEEEEEGGGGHHHHHHTTCGGGGTS----
T ss_pred EEEcc---------CCCchhHHHhCCCCCEEEEeeCCCCcccccccccCCeEEEEeecccHHHHHHHHHHHHhcCC----
Confidence 99875 79999999999999999999 99998544322235899999999999999999998765321
Q ss_pred cCCeEEEEEeccCCcccccHHHHH-HHHH-----hC-CCceEEEEEecCCcccCCCCeeEecchHHHhH-HHHHHH--hc
Q 043022 241 FNGLAWLFLGVPTSSSLLYKEEFE-KMKE-----KA-PENFRLDFAVSREQKNEKGEKMYIQTRMAEYA-NELWEL--LK 310 (361)
Q Consensus 241 ~~~~i~L~~g~r~~~d~~~~~el~-~l~~-----~~-~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~-~~~~~~--l~ 310 (361)
..+++|+|++|+.+|++|.+||+ +|.+ ++ +.++++++++|++.. +.++++++.+.+.. ++.... +.
T Consensus 148 -~~~v~l~~~~r~~~~~~~~~el~~~l~~~~~~~~~~~~~~~~~~~~s~~~~---~~~g~v~~~l~~~~l~~~~~~~~~~ 223 (272)
T 2bgi_A 148 -FDEVIMMHACRTVAELEYGRQLVEALQEDPLIGELVEGKLKYYPTTTREEF---HHMGRITDNLASGKVFEDLGIAPMN 223 (272)
T ss_dssp -CSEEEEEEEESSSGGGHHHHHHHHHHHHCTTTTTTSTTTEEEEEEESSSCC---SSBCCHHHHHHSCHHHHHHTCCCCC
T ss_pred -CCcEEEEEEeCCHHHhhHHHHHHHHHHhcchhhcccCCcEEEEEEecCCcc---ccCceechHHHhhhHhhhcccccCC
Confidence 36899999999999999999999 9987 54 339999999998732 35677877665421 111111 12
Q ss_pred cCCeEEEEECCcchHHHHHHHHHHHHHccC
Q 043022 311 KDNTYVYMCGLRGMEKGIDDIMVSLAANDG 340 (361)
Q Consensus 311 ~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~ 340 (361)
.++..+|+|||++|++++++.|.+.|....
T Consensus 224 ~~~~~vyvCGp~~m~~~v~~~l~~~G~~~~ 253 (272)
T 2bgi_A 224 PETDRAMVCGSLAFNVDVMKVLESYGLREG 253 (272)
T ss_dssp TTTEEEEEEECHHHHHHHHHHHHTTTCCBC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCChH
Confidence 257899999999999999999998887653
No 27
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=100.00 E-value=8.8e-36 Score=271.49 Aligned_cols=225 Identities=21% Similarity=0.225 Sum_probs=180.4
Q ss_pred CeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEE
Q 043022 84 PYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVK 163 (361)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~ 163 (361)
...++|++++.++++ +++|+|..+..+.|.||||+.|.++..+ +...|+|||+|.|. ++.++|+|+
T Consensus 3 ~~~~~V~~~~~~~~~-----~~~l~l~~~~~~~~~pGq~v~l~~~~~g----~~~~R~ySi~s~~~-----~~~~~~~i~ 68 (257)
T 2qdx_A 3 LYTERVLSVHHWNDT-----LFSFKTTRNPGLRFKTGQFVMIGLEVDG----RPLMRAYSIASPNY-----EEHLEFFSI 68 (257)
T ss_dssp SEEEEEEEEEEEETT-----EEEEEEECCTTCCCCTTCEEEEEEEETT----EEEEEEEECCSCTT-----SSEEEEEEE
T ss_pred eEEEEEEEEEEcCCC-----eEEEEEeCCCCCccCCCCEEEEEecCCC----CceeeeeEeecCCC-----CCeEEEEEE
Confidence 567999999999998 9999999988788999999999987422 34689999999984 479999999
Q ss_pred EeeEecCCCceecCccchhhhcCCCCCEEEEE-ccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccC
Q 043022 164 RLVYTNENGEIVKGVCSNFLCDLKPGAEVKIT-GPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFN 242 (361)
Q Consensus 164 ~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~-gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~ 242 (361)
.++ +|.+|++|+++++||+|.|. ||+|.+........+++|||||||||||+++|++++...+. .
T Consensus 69 ~~~---------~G~~s~~l~~l~~Gd~v~v~~gp~G~f~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~-----~ 134 (257)
T 2qdx_A 69 KVP---------DGPLTSRLQHLKEGDELMVSRKPTGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYER-----Y 134 (257)
T ss_dssp CCT---------TCTTHHHHTTCCTTCEEEECSCCBCSCCGGGBCSCSEEEEEEEGGGGHHHHHHTTCHHHHHH-----C
T ss_pred EeC---------CCcchhHHHhCCCCCEEEEecCCCCCccCCcccCCCeEEEEEeceEHHHHHHHHHHHHhcCC-----C
Confidence 875 79999999999999999999 99998543322235799999999999999999988765431 2
Q ss_pred CeEEEEEeccCCcccccHHHHH-HHHH-----hC-CCceEEEEEecCCcccCCCCeeEecchHHHhH-HHHHHH--hccC
Q 043022 243 GLAWLFLGVPTSSSLLYKEEFE-KMKE-----KA-PENFRLDFAVSREQKNEKGEKMYIQTRMAEYA-NELWEL--LKKD 312 (361)
Q Consensus 243 ~~i~L~~g~r~~~d~~~~~el~-~l~~-----~~-~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~-~~~~~~--l~~~ 312 (361)
.+++|+|++|+.+|++|.+||+ ++.+ ++ +.++++++++|++.. +.++++++.+.+.. ++.... +...
T Consensus 135 ~~v~l~~~~r~~~~~~~~~el~~~l~~~~~~~~~~~~~~~~~~~~s~~~~---~~~g~v~~~l~~~~l~~~~~~~~~~~~ 211 (257)
T 2qdx_A 135 EKVILVHGVRWVSELAYADFITKVLPEHEYFGDQVKEKLIYYPLVTREPF---RNQGRQTDLMRSGKLFEDIGLPPMNPQ 211 (257)
T ss_dssp SEEEEEEEESSGGGCTTHHHHHTTGGGCTTTHHHHHHHEEEEEEESSSCC---SSBSCHHHHHHHSHHHHHHTCCCCCTT
T ss_pred CeEEEEEEcCCHHHhHhHHHHHHHHHhchhhhccCCCcEEEEEEecCCCc---ccCceechhhhhhhHHHhcccccCCcC
Confidence 6899999999999999999999 8865 32 128999999998732 25667777665421 111111 1225
Q ss_pred CeEEEEECCcchHHHHHHHHHHHHHcc
Q 043022 313 NTYVYMCGLRGMEKGIDDIMVSLAAND 339 (361)
Q Consensus 313 ~~~vyvCGp~~m~~~v~~~L~~~g~~~ 339 (361)
+..+|+|||++|++++++.|.+.|...
T Consensus 212 ~~~vyvCGp~~m~~~v~~~l~~~G~~~ 238 (257)
T 2qdx_A 212 DDRAMICGSPSMLEETSAVLDSFGLKI 238 (257)
T ss_dssp TEEEEEEECHHHHHHHHHHHHHTTCCB
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCh
Confidence 789999999999999999999988764
No 28
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=100.00 E-value=1.2e-34 Score=280.14 Aligned_cols=222 Identities=18% Similarity=0.246 Sum_probs=179.4
Q ss_pred CCeeEEEEeEeeecCCCCCCceEEEEeeCCC--c-cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEE
Q 043022 83 TPYIGRCLLNTKITGDDAPGETWHMVFSTEG--E-VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVS 159 (361)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~--~-l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~ 159 (361)
....++|++++.++++ +++|+|..+. . ..|+||||+.|.++..+. ...+.|+|||+|.|. ++.++
T Consensus 151 ~~~~~~V~~~~~~s~~-----i~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~--~~~~~R~YSi~s~p~-----~~~~~ 218 (396)
T 1gvh_A 151 GTRDFRIVAKTPRSAL-----ITSFELEPVDGGAVAEYRPGQYLGVWLKPEGF--PHQEIRQYSLTRKPD-----GKGYR 218 (396)
T ss_dssp SEEEEEEEEEEECSSS-----EEEEEEEETTCCCCCCCCTTCEEEEEECCTTC--SSCEEEEEECCSCCC-----SSCEE
T ss_pred CcEEEEEEEEEEcCCC-----eEEEEEEeCCCCcCCCCCCCCeEEEEecCCCC--ccceeecceeccCCC-----CCeEE
Confidence 3568999999999999 9999999864 2 479999999999873210 124689999999984 57899
Q ss_pred EEEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccc
Q 043022 160 LCVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHED 238 (361)
Q Consensus 160 ~~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~ 238 (361)
|+||+++ +|.+|+||++ +++||.|.|.||+|.| .++.+..+++|||||||||||+++|++++...+.
T Consensus 219 i~Vk~~~---------~G~~S~~L~~~l~~Gd~v~v~gP~G~f-~l~~~~~~~~vlIagGtGitP~~s~l~~l~~~~~-- 286 (396)
T 1gvh_A 219 IAVKREE---------GGQVSNWLHNHANVGDVVKLVAPAGDF-FMAVADDTPVTLISAGVGQTPMLAMLDTLAKAGH-- 286 (396)
T ss_dssp EEEECCT---------TCHHHHHHHHTCCTTCEEEEEEEECSC-CCCCCTTCCEEEEEEGGGGHHHHHHHHHHHHHTC--
T ss_pred EEEEEcC---------CCcchHHHHhcCCCCCEEEEEcCCcce-ECCCCCCCCEEEEecchhHhHHHHHHHHHHhcCC--
Confidence 9999875 6999999997 9999999999999964 4543456899999999999999999999876532
Q ss_pred cccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccC-----CCCeeEecch-HHHhHHHHHHHhccC
Q 043022 239 YKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNE-----KGEKMYIQTR-MAEYANELWELLKKD 312 (361)
Q Consensus 239 ~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~-----~g~~~~v~~~-l~~~~~~~~~~l~~~ 312 (361)
.++++|+|++|+.++++|.++|+++.++++ +++++++++++...| .+..+++... +.+.. .+ .
T Consensus 287 ---~~~v~l~~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~G~~~~~~l~~~~-----~~--~ 355 (396)
T 1gvh_A 287 ---TAQVNWFHAAENGDVHAFADEVKELGQSLP-RFTAHTWYRQPSEADRAKGQFDSEGLMDLSKLEGAF-----SD--P 355 (396)
T ss_dssp ---CSCEEEEEEESCTTTCCSHHHHHHHHHTSS-SEEEEEEESSCCHHHHHHTCCSEESSCCGGGSSSCC-----CC--T
T ss_pred ---CCcEEEEEEeCCHHHhhhHHHHHHHHHHCC-CeEEEEEECCCCccccccCccCccCcCCHHHHhhcc-----CC--C
Confidence 368999999999999999999999998888 899999999875432 2234445432 21100 11 3
Q ss_pred CeEEEEECCcchHHHHHHHHHHHHHcc
Q 043022 313 NTYVYMCGLRGMEKGIDDIMVSLAAND 339 (361)
Q Consensus 313 ~~~vyvCGp~~m~~~v~~~L~~~g~~~ 339 (361)
+..+|+|||++|++++++.|.+.|.+.
T Consensus 356 ~~~vyvCGp~~m~~~v~~~L~~~Gv~~ 382 (396)
T 1gvh_A 356 TMQFYLCGPVGFMQFTAKQLVDLGVKQ 382 (396)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHTTCCG
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCCH
Confidence 689999999999999999999988764
No 29
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=100.00 E-value=6.1e-35 Score=266.78 Aligned_cols=209 Identities=18% Similarity=0.220 Sum_probs=170.8
Q ss_pred eeEEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEE
Q 043022 85 YIGRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVK 163 (361)
Q Consensus 85 ~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~ 163 (361)
+.++|++++.++++ +++|+|+.+. ...|+||||+.|.++..+ +...|+|||+|.|. +.+.++|+|+
T Consensus 6 ~~~~V~~~~~~t~~-----~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~----~~~~R~ySi~s~~~----~~~~l~~~vk 72 (262)
T 1ep3_B 6 EMMTVVSQREVAYN-----IFEMVLKGTLVDEMDLPGQFLHLAVPNGA----MLLRRPISISSWDK----RAKTCTILYR 72 (262)
T ss_dssp EEEEEEEEEEEETT-----EEEEEEESGGGGGCCSTTCEEEECCSCTT----CCSCEEEECCEEET----TTTEEEEEEE
T ss_pred cceEEEEEEEecCC-----EEEEEEEcCcccccCCCCceEEEEcCCCC----ceeeEEEEeeeecC----CCCEEEEEEE
Confidence 46899999999999 9999999887 457999999999987532 34799999999986 5789999999
Q ss_pred EeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCC-CCCcEEEEecCCchhhHHHHHHHHHhhcccccccC
Q 043022 164 RLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRD-PNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFN 242 (361)
Q Consensus 164 ~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~-~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~ 242 (361)
+++ .|.+|+||+++++||+|.|.||+|+.|.++.+ ..++++||||||||||+++|++++...+
T Consensus 73 ~~~---------~G~~S~~l~~l~~Gd~v~v~gP~G~~f~l~~~~~~~~~lliagGtGitP~~s~l~~l~~~~------- 136 (262)
T 1ep3_B 73 IGD---------ETTGTYKLSKLESGAKVDVMGPLGNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKTG------- 136 (262)
T ss_dssp CCC---------TTSHHHHHHTCCTTCEEEEEEEESBCCCCTTCCTTSEEEEEEEGGGSHHHHHHHHHHHHHT-------
T ss_pred Eec---------CCchHHHHhcCCCCCEEEEEcccCCCccCCCccCCCeEEEEECcCcHHHHHHHHHHHHHcC-------
Confidence 976 79999999999999999999999985666543 3689999999999999999999987642
Q ss_pred CeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCc
Q 043022 243 GLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLR 322 (361)
Q Consensus 243 ~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~ 322 (361)
.+++|+|++|+.+|++|.+||++|.. . +++++ ++ +.|.+.++++++.+.+. +. ++..+|+|||+
T Consensus 137 ~~v~l~~~~r~~~~~~~~~el~~l~~----~-~~~~~-~~--~~~~~~~g~v~~~l~~~-------~~-~~~~vyvCGp~ 200 (262)
T 1ep3_B 137 CQMTILLGFASENVKILENEFSNLKN----V-TLKIA-TD--DGSYGTKGHVGMLMNEI-------DF-EVDALYTCGAP 200 (262)
T ss_dssp CEEEEEEEESSGGGCCCHHHHHTSTT----E-EEEEE-ET--TCSSSEESCHHHHHHHC-------CS-CCSEEEEESCH
T ss_pred CeEEEEEEcCCHHHhhhHHHHhhhcc----C-cEEEE-EC--CCCCcceeehHHHHHhh-------cc-CCCEEEEECCH
Confidence 68999999999999999999988643 2 34433 32 23555677777755432 22 46799999999
Q ss_pred chHHHHHHHHHHHHHcc
Q 043022 323 GMEKGIDDIMVSLAAND 339 (361)
Q Consensus 323 ~m~~~v~~~L~~~g~~~ 339 (361)
.|++++++ |.+.|.+.
T Consensus 201 ~m~~~v~~-l~~~gv~~ 216 (262)
T 1ep3_B 201 AMLKAVAK-KYDQLERL 216 (262)
T ss_dssp HHHHHHHH-HTTTCSSE
T ss_pred HHHHHHHH-HHhCCCCE
Confidence 99999999 98776653
No 30
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=100.00 E-value=8.1e-34 Score=274.91 Aligned_cols=226 Identities=17% Similarity=0.234 Sum_probs=179.3
Q ss_pred CCeeEEEEeEeeecCCCCCCceEEEEeeCCC--c-cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEE
Q 043022 83 TPYIGRCLLNTKITGDDAPGETWHMVFSTEG--E-VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVS 159 (361)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~--~-l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~ 159 (361)
....++|++++.++++ +++|+|..+. . ..|+||||+.|.++..+ ....+.|+|||+|.|. ++.++
T Consensus 153 ~~~~~~V~~~~~~s~~-----i~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~--~~~~~~R~YSi~s~p~-----~~~~~ 220 (403)
T 1cqx_A 153 GWRTFVIREKRPESDV-----ITSFILEPADGGPVVNFEPGQYTSVAIDVPA--LGLQQIRQYSLSDMPN-----GRTYR 220 (403)
T ss_dssp SCEEEEEEEEEECSSS-----EEEEEEEETTCCCCCCCCTTCEEEEEEEETT--TTEEEEEEEECCSCCC-----SSCEE
T ss_pred cceeEEEEEEEEcCCC-----eEEEEEEeCCCCcCCCCCCCCEEEEEEecCC--CCcceeecceecCCCC-----CCeEE
Confidence 3678999999999999 9999999764 3 47999999999986311 0123689999999983 57899
Q ss_pred EEEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccc
Q 043022 160 LCVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHED 238 (361)
Q Consensus 160 ~~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~ 238 (361)
|+||+++ ....++|.+|+||++ +++||.|.|.||+|.+ .++.+..+++|||||||||||+++|++++.. +.
T Consensus 221 i~Vk~~~----~~~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f-~l~~~~~~~~vlIagGtGitP~~s~l~~l~~-~~-- 292 (403)
T 1cqx_A 221 ISVKREG----GGPQPPGYVSNLLHDHVNVGDQVKLAAPYGSF-HIDVDAKTPIVLISGGVGLTPMVSMLKVALQ-AP-- 292 (403)
T ss_dssp EEEECCC----BTTBCCCHHHHHHHHHCCTTCEEEECCCBCSC-SCCTTCCSCEEEEESSCCHHHHHHHHHHHTC-SS--
T ss_pred EEEEECC----CCCCCCCeehHHHhhCCCCCCEEEEecCccCc-ccCCCCCCCEEEEEecccHhhHHHHHHHHHh-CC--
Confidence 9999863 011225999999996 9999999999999964 4543456899999999999999999999875 21
Q ss_pred cccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCC-----CCeeEecch-HHHhHHHHHHHhccC
Q 043022 239 YKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEK-----GEKMYIQTR-MAEYANELWELLKKD 312 (361)
Q Consensus 239 ~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~-----g~~~~v~~~-l~~~~~~~~~~l~~~ 312 (361)
.++++|+|++|+.++++|.++|+++.++++ +++++++++++...|. +..+++... +.+ +. .+ .
T Consensus 293 ---~~~v~l~~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~G~i~~~~l~~----~~-~~--~ 361 (403)
T 1cqx_A 293 ---PRQVVFVHGARNSAVHAMRDRLREAAKTYE-NLDLFVFYDQPLPEDVQGRDYDYPGLVDVKQIEK----SI-LL--P 361 (403)
T ss_dssp ---CCCEEEEEEESCSSSCHHHHHHHHHHHHCT-TEEEEEEESSCCTTCCBTTTBSEESSCCGGGSHH----HH-CC--T
T ss_pred ---CCcEEEEEEeCChhhCcHHHHHHHHHHhCC-CcEEEEEECCCCcccccccccCcCCCcCHHHHhh----cc-CC--C
Confidence 378999999999999999999999999888 8999999998765442 234455432 221 11 12 3
Q ss_pred CeEEEEECCcchHHHHHHHHHHHHHcc
Q 043022 313 NTYVYMCGLRGMEKGIDDIMVSLAAND 339 (361)
Q Consensus 313 ~~~vyvCGp~~m~~~v~~~L~~~g~~~ 339 (361)
+..+|+|||++|++++++.|.+.|.+.
T Consensus 362 ~~~vyvCGp~~m~~~v~~~L~~~Gv~~ 388 (403)
T 1cqx_A 362 DADYYICGPIPFMRMQHDALKNLGIHE 388 (403)
T ss_dssp TCEEEEESSHHHHHHHHHHHHHTTCCG
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCCH
Confidence 789999999999999999999988764
No 31
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=100.00 E-value=1.5e-33 Score=272.69 Aligned_cols=223 Identities=18% Similarity=0.258 Sum_probs=177.1
Q ss_pred CCeeEEEEeEeeecCCCCCCceEEEEeeCCC--cc-----ccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCC
Q 043022 83 TPYIGRCLLNTKITGDDAPGETWHMVFSTEG--EV-----PYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDS 155 (361)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~--~l-----~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~ 155 (361)
....++|++++.++++ +++|+|..+. .+ .|+||||+.|.++....+....+.|+|||+|.|. +
T Consensus 148 ~~~~~~V~~~~~~s~~-----i~~~~l~~~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p~-----~ 217 (399)
T 4g1v_A 148 GWKPFEITAKEYVASD-----IVEFTVKPKFGSGIELESLPITPGQYITVNTHPIRQENQYDALRHYSLCSAST-----K 217 (399)
T ss_dssp SCEEEEEEEEEEEETT-----EEEEEEEECTTSCCCGGGCCCCTTCEEEEEECCCSTTCCSCEEEEEEBSCSCC-----T
T ss_pred cceEEEEEEEEEcCCC-----eEEEEEEcCCCCcCCcCCCCCCCCCEEEEEEeCCCCCCccceeeeecccCCCC-----C
Confidence 3667899999999999 9999999864 34 7999999999964220001134689999999984 5
Q ss_pred cEEEEEEEEeeEecCCCceecCccchhhh-cCCCCCEEEEEccCCCCcCCCCC----CCCcEEEEecCCchhhHHHHHHH
Q 043022 156 KTVSLCVKRLVYTNENGEIVKGVCSNFLC-DLKPGAEVKITGPVGKEMLMPRD----PNATVIMLATGTGIAPFRGFLWK 230 (361)
Q Consensus 156 ~~l~~~V~~~~~~~~~~~~~~G~~S~~L~-~l~~G~~v~i~gP~G~~~~~~~~----~~~~iv~Ia~GtGiaP~~~~l~~ 230 (361)
+.++|+||++.. .+....|.+|+||+ .+++||.|.|.||+|.+ .++.+ ..+++|||||||||||+++|+++
T Consensus 218 ~~~~i~Vk~~~~---~~~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f-~l~~~~~~~~~~~~vlIagG~GitP~~s~l~~ 293 (399)
T 4g1v_A 218 NGLRFAVKMEAA---RENFPAGLVSEYLHKDAKVGDEIKLSAPAGDF-AINKELIHQNEVPLVLLSSGVGVTPLLAMLEE 293 (399)
T ss_dssp TCEEEEEECCCC---BTTBCCCHHHHHHHHTCCTTCEEEEEEEECSC-CCCTTTTTCSSSCEEEEEEGGGHHHHHHHHHH
T ss_pred CeEEEEEEeccC---CCCCCCCEehhHHHhCCCCCCEEEEEecccce-eeCcccccCCCCCEEEEecceeHhHHHHHHHH
Confidence 789999998420 00112799999998 69999999999999984 44434 46899999999999999999999
Q ss_pred HHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhc
Q 043022 231 MFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLK 310 (361)
Q Consensus 231 ~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~ 310 (361)
+...+. .++++|+|++|+.++++|.++|+++.++++ +++++++++++. +++... .+.+.+.
T Consensus 294 l~~~~~-----~~~v~l~~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~s~~~-------g~~~~~------~l~~~~~ 354 (399)
T 4g1v_A 294 QVKCNP-----NRPIYWIQSSYDEKTQAFKKHVDELLAECA-NVDKIIVHTDTE-------PLINAA------FLKEKSP 354 (399)
T ss_dssp HHHHCT-----TSCEEEEEEESSSTTSTTHHHHHHHHTTCS-SEEEEEEETTTS-------CCCCHH------HHHHHSC
T ss_pred HHHcCC-----CCCEEEEEecCCHHHhhhHHHHHHHHHhCC-CcEEEEEEeCCC-------CcccHH------HHHhhCC
Confidence 887542 368999999999999999999999998888 899999998753 233321 1222343
Q ss_pred cCCeEEEEECCcchHHHHHHHHHHHHHcc
Q 043022 311 KDNTYVYMCGLRGMEKGIDDIMVSLAAND 339 (361)
Q Consensus 311 ~~~~~vyvCGp~~m~~~v~~~L~~~g~~~ 339 (361)
++..+|+|||++|++++++.|.+.|.+.
T Consensus 355 -~~~~vyvCGp~~m~~~v~~~L~~~Gv~~ 382 (399)
T 4g1v_A 355 -AHADVYTCGSLAFMQAMIGHLKELEHRD 382 (399)
T ss_dssp -SSCEEEEEECHHHHHHHHHHHHHTTCCG
T ss_pred -CCCEEEEECCHHHHHHHHHHHHHcCCCH
Confidence 4789999999999999999999998774
No 32
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=100.00 E-value=7.3e-33 Score=260.27 Aligned_cols=205 Identities=17% Similarity=0.248 Sum_probs=165.6
Q ss_pred CCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCc--c-ccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcE
Q 043022 81 PKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGE--V-PYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKT 157 (361)
Q Consensus 81 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~--l-~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~ 157 (361)
|.....++|++++.++++ +++|+|..+.. + .|+||||+.|.+++. ..|+|||+|.|. +.+.
T Consensus 5 ~~~~~~~~V~~~~~~t~~-----~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~g-------~~R~ySi~s~~~----~~~~ 68 (321)
T 2pia_A 5 EDGFLRLKIASKEKIARD-----IWSFELTDPQGAPLPPFEAGANLTVAVPNG-------SRRTYSLCNDSQ----ERNR 68 (321)
T ss_dssp TTTCEEEEEEEEEEEETT-----EEEEEEECTTCCCCCCCCTTCEEEEECTTS-------CEEEEECCSCTT----CCSE
T ss_pred CCCcEEEEEEEEEEcCCC-----EEEEEEEcCCCCcCCCCCCCCEEEEECCCC-------CcEEEEeCCCCC----CCCe
Confidence 455788999999999999 99999998763 4 699999999998631 689999999986 5689
Q ss_pred EEEEEEEeeEecCCCceecCc-cchhhh-cCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhc
Q 043022 158 VSLCVKRLVYTNENGEIVKGV-CSNFLC-DLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK 235 (361)
Q Consensus 158 l~~~V~~~~~~~~~~~~~~G~-~S~~L~-~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~ 235 (361)
++|+|++++ +|. +|+||+ ++++||.|.|.||+|.| .++. ..+++||||||||||||++|++++...+
T Consensus 69 l~i~Vk~~~---------~G~g~S~~L~~~l~~Gd~v~v~gP~g~f-~l~~-~~~~~vliagG~GItP~~s~l~~l~~~~ 137 (321)
T 2pia_A 69 YVIAVKRDS---------NGRGGSISFIDDTSEGDAVEVSLPRNEF-PLDK-RAKSFILVAGGIGITPMLSMARQLRAEG 137 (321)
T ss_dssp EEEEEECCT---------TSCSHHHHHHHSCCTTCEEEECCCBCCS-CCCT-TCSEEEEEEEGGGHHHHHHHHHHHHHHC
T ss_pred EEEEEEEec---------CCcchhHHHHhcCCCCCEEEEeCCcccc-ccCC-CCCCEEEEEecccHhHHHHHHHHHHHcC
Confidence 999999876 687 999999 69999999999999975 4443 3679999999999999999999988653
Q ss_pred ccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeE
Q 043022 236 HEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTY 315 (361)
Q Consensus 236 ~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~ 315 (361)
..+++|+|++|+.++++|.+||+++. ++.++++++ +++.. +.+.++++.+. ... .+..
T Consensus 138 ------~~~v~l~~~~r~~~~~~~~~el~~l~--~~~~~~~~~--~~~~~---~g~~~~~~ll~--------~~~-~~~~ 195 (321)
T 2pia_A 138 ------LRSFRLYYLTRDPEGTAFFDELTSDE--WRSDVKIHH--DHGDP---TKAFDFWSVFE--------KSK-PAQH 195 (321)
T ss_dssp ------SSEEEEEEEESCGGGCTTHHHHHSTT--TTTTEEEEE--CTTCT---TSCCCHHHHHS--------SCC-TTEE
T ss_pred ------CCcEEEEEEECChhhhHHHHHHhcCc--cCCeEEEEE--CCCcc---cCccCHHHHhc--------ccC-CCCE
Confidence 16899999999999999999999885 233777654 44321 12333332222 122 5789
Q ss_pred EEEECCcchHHHHHHHHHH
Q 043022 316 VYMCGLRGMEKGIDDIMVS 334 (361)
Q Consensus 316 vyvCGp~~m~~~v~~~L~~ 334 (361)
+|+|||++|++++++.|.+
T Consensus 196 vyvCGP~~m~~~v~~~l~~ 214 (321)
T 2pia_A 196 VYCCGPQALMDTVRDMTGH 214 (321)
T ss_dssp EEEESCHHHHHHHHHHTTT
T ss_pred EEEECCHHHHHHHHHHHHh
Confidence 9999999999999999987
No 33
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=99.96 E-value=2.1e-28 Score=222.14 Aligned_cols=207 Identities=15% Similarity=0.170 Sum_probs=153.9
Q ss_pred CCCeeEEEEeEeeecCCCCCCceEEEEeeCCCc--c-ccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEE
Q 043022 82 KTPYIGRCLLNTKITGDDAPGETWHMVFSTEGE--V-PYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTV 158 (361)
Q Consensus 82 ~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~--l-~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l 158 (361)
.....++|++++.++++ +++|+|..+.. + .|.|||||.|.++..+ + +...|+|||++.+ . +.+
T Consensus 6 ~~~~~~~V~~~~~~t~~-----~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~--~-~~~~R~YSi~~~~-----~-~~~ 71 (252)
T 2gpj_A 6 PAPRELEVIRSTYITPH-----MLRITLGGAGLAGFPADQESAYIKLLFPQAG--E-RPLMRTYTIRQQR-----D-DEI 71 (252)
T ss_dssp CCCEEEEEEEEEEEETT-----EEEEEEESGGGTTCCSCCTTCEEEEEECCTT--S-CCEEEEEECCEEE-----T-TEE
T ss_pred CCcEEEEEEEEEEcCCC-----EEEEEEEcCChhhcCCCCCCCeEEEEcccCC--C-CCCCCceeeeccC-----C-CEE
Confidence 34678999999999999 99999998753 3 4799999999987422 1 3368999999976 3 688
Q ss_pred EEEEEEeeEecCCCceec-CccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhccc
Q 043022 159 SLCVKRLVYTNENGEIVK-GVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHE 237 (361)
Q Consensus 159 ~~~V~~~~~~~~~~~~~~-G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~ 237 (361)
+|.|+..+ . |.+|+||+++++||.|.|.||.|.| .++. ..++++|||||||||||++|++++..
T Consensus 72 ~i~~~~~~---------~~G~~S~~l~~l~~Gd~l~v~gP~G~f-~l~~-~~~~~lliagGtGitPi~s~l~~l~~---- 136 (252)
T 2gpj_A 72 DVDFVLHD---------TDGPASSWAKTAQVGELIQIGGPGLKK-LINF-EADWFLLAGDMTALPAISVNLAKLPN---- 136 (252)
T ss_dssp EEEEECCS---------SCCHHHHHHHHCCTTCEEEEEEEECCC-CCCS-SSSEEEEEEEGGGHHHHHHHHHHSCT----
T ss_pred EEEEEEeC---------CCCcHHHHHhhCCCCCEEEEecCCCCC-cCCC-CCceEEEEcchhhHHHHHHHHHhCCC----
Confidence 88888754 4 8999999999999999999999965 4442 34789999999999999999998742
Q ss_pred ccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHH-hccCCeEE
Q 043022 238 DYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWEL-LKKDNTYV 316 (361)
Q Consensus 238 ~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~-l~~~~~~v 316 (361)
..++++++++++.+|++..+ ..+ +++++.+.+++.. +.+ ..+.+.+. .. +...+..+
T Consensus 137 ----~~~~~~~~~~~~~~d~~~l~-------~~~-~~~v~~~~~~~~~-~~g--~~~~~~l~-------~~~~~~~~~~v 194 (252)
T 2gpj_A 137 ----NAVGYAVIEVLSEADIQPLV-------HPE-HVELHWVINPEAD-PEG--RPLVERIA-------QLPWLAGEPAV 194 (252)
T ss_dssp ----TCEEEEEEEESSGGGCCCCC-------CCT-EEEEEEEECSSCC-TTC--HHHHHHHT-------TSCCCSSCEEE
T ss_pred ----CCcEEEEEEECCHHHhhccc-------CCC-CcEEEEEeCCCCC-ccc--HHHHHHHH-------hccCCCCCcEE
Confidence 14678888999987765321 223 7888776655421 101 11111111 11 11146789
Q ss_pred EEECCcchHHHHHHHHH-HHHHcc
Q 043022 317 YMCGLRGMEKGIDDIMV-SLAAND 339 (361)
Q Consensus 317 yvCGp~~m~~~v~~~L~-~~g~~~ 339 (361)
|+|||++|++++++.|. +.|...
T Consensus 195 y~CGP~~m~~av~~~l~~~~G~~~ 218 (252)
T 2gpj_A 195 WIACEFNSMRALRRHFKQAHALPK 218 (252)
T ss_dssp EEEEEHHHHHHHHHHHHHHCCCCG
T ss_pred EEEcCHHHHHHHHHHHHHhcCCCH
Confidence 99999999999999998 677653
No 34
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=99.90 E-value=3.7e-25 Score=186.38 Aligned_cols=141 Identities=18% Similarity=0.200 Sum_probs=97.9
Q ss_pred CCCCCE-EEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHH
Q 043022 186 LKPGAE-VKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFE 264 (361)
Q Consensus 186 l~~G~~-v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~ 264 (361)
+++||+ +.|.||+|++|.++ ..++++||||||||||+++|++++...+ .+++|+ |+|+.+|++|.+||+
T Consensus 1 L~~Gd~vl~v~gP~G~~f~~~--~~~~~llIaGG~GItPl~sm~~~l~~~~-------~~v~l~-g~r~~~d~~~~~el~ 70 (158)
T 3lrx_A 1 MKEGDSLLNVAGPLGTPVPME--KFGKILAIGAYTGIVEVYPIAKAWQEIG-------NDVTTL-HVTFEPMVILKEELE 70 (158)
T ss_dssp -----------CCCCCCBCCC--CCSEEEEEEETTHHHHHHHHHHHHHHHT-------CEEEEE-EECBGGGCCSHHHHH
T ss_pred CcCCCEeeEEECCCCCCCccC--CCCeEEEEEccCcHHHHHHHHHHHHhcC-------CcEEEE-EeCCHHHhhHHHHHH
Confidence 578999 59999999988764 4689999999999999999999987543 579999 999999999999999
Q ss_pred HHHHhCCCceEEEEEecCC----cccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHccC
Q 043022 265 KMKEKAPENFRLDFAVSRE----QKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDG 340 (361)
Q Consensus 265 ~l~~~~~~~~~~~~~~s~~----~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~ 340 (361)
+|.. ++.+.++++.+ +++|.+.++++++.+.+.. ... +...||+|||+.|++++.+.|.+.|.+..
T Consensus 71 ~l~~----~~~~~~v~~~~~~~~~~~~~g~~G~v~~~l~~~l----~~~--~~~~vy~CGP~~mm~~v~~~l~~~Gv~~~ 140 (158)
T 3lrx_A 71 KAVT----RHIVEPVPLNPNQDFLANMKNVSQRLKEKVRELL----ESE--DWDLVFMVGPVGDQKQVFEVVKEYGVPMK 140 (158)
T ss_dssp HHSS----EEEECCBCCCTTSCHHHHHHHHHHHHHHHHHHHH----HHS--CCSEEEEESCHHHHHHHHHHHGGGTCCEE
T ss_pred HHHh----ceEEEEeeccccccCCCCCCCCcccccHHHHHhh----ccC--CCCEEEEECCHHHHHHHHHHHHHcCCCEE
Confidence 8853 44444333332 2345556677776554432 222 35689999999999999999999988755
Q ss_pred CCHHHH
Q 043022 341 IDWLDY 346 (361)
Q Consensus 341 ~~~~~~ 346 (361)
...|++
T Consensus 141 vslE~~ 146 (158)
T 3lrx_A 141 VDLHPI 146 (158)
T ss_dssp ECC---
T ss_pred EEeeHH
Confidence 555543
No 35
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=99.87 E-value=3.8e-23 Score=170.89 Aligned_cols=128 Identities=18% Similarity=0.181 Sum_probs=96.1
Q ss_pred EEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCC
Q 043022 192 VKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAP 271 (361)
Q Consensus 192 v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~ 271 (361)
+.|.||+|++|..+ ..++++|||||+||||+++|++++...+ .++.|+ |+|+.+|++|.+||++|..
T Consensus 3 ~~v~GP~G~~~~~~--~~~~~llIaGG~GiaPl~sm~~~l~~~~-------~~v~l~-g~R~~~~~~~~~el~~l~~--- 69 (142)
T 3lyu_A 3 LNVAGPLGTPVPME--KFGKILAIGAYTGIVEVYPIAKAWQEIG-------NDVTTL-HVTFEPMVILKEELEKAVT--- 69 (142)
T ss_dssp ----CCCSCCBCCC--CCSEEEEEEETTHHHHHHHHHHHHHHTT-------CEEEEE-EEEEGGGCCSHHHHHTTSS---
T ss_pred eeeeCCCCCCccCC--CCCeEEEEECcCcHHHHHHHHHHHHhcC-------CcEEEE-EeCCHHHhhHHHHHHHHHh---
Confidence 46899999988775 3589999999999999999999987543 579999 9999999999999998753
Q ss_pred CceEEEEEecCC----cccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHcc
Q 043022 272 ENFRLDFAVSRE----QKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAAND 339 (361)
Q Consensus 272 ~~~~~~~~~s~~----~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~ 339 (361)
++.+.++++++ +++|.|.+++|.+.+.+.. ... +...||+|||+.|++++.+.+++.|.+-
T Consensus 70 -~~~~~~~~~~~~~~~~d~~~g~~G~v~~~l~~~~----~~~--~~~~vy~CGP~~Mm~av~~~l~~~~~~~ 134 (142)
T 3lyu_A 70 -RHIVEPVPLNPNQDFLANMKNVSQRLKEKVRELL----ESE--DWDLVFMVGPVGDQKQVFEVVKEYGVPM 134 (142)
T ss_dssp -EEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHH----HSS--CCSEEEEESCHHHHHHHHHHHHHHTCCB
T ss_pred -heEEEEeecccccCCCCCCCCCccchhHHHHHhc----ccC--CCCEEEEECCHHHHHHHHHHHHHcCCch
Confidence 45555444442 3345556677766554422 211 3568999999999999999999988763
No 36
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}
Probab=99.84 E-value=2.3e-21 Score=167.01 Aligned_cols=146 Identities=10% Similarity=0.209 Sum_probs=99.8
Q ss_pred EEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccc--cccCCeEEEEEeccCCcccc-cHHHHHHHHH
Q 043022 192 VKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHED--YKFNGLAWLFLGVPTSSSLL-YKEEFEKMKE 268 (361)
Q Consensus 192 v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~--~~~~~~i~L~~g~r~~~d~~-~~~el~~l~~ 268 (361)
|.|+||+|.++... ...+++|||||||||||+++|+++++...... ....++++|+|++|+.++++ |.++|+++..
T Consensus 1 v~v~GP~G~~~~~~-~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~~~~w~~~~l~~l~~ 79 (186)
T 3a1f_A 1 IAVDGPFGTASEDV-FSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTHAFEWFADLLQLLES 79 (186)
T ss_dssp CCTTSTTSHHHHHH-TTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CeEECCCCCCccCh-hhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcchHHHHHHHHHHHHH
Confidence 35789999876432 35689999999999999999999987652100 01147899999999999987 9999999987
Q ss_pred hC-----CCceEEEEEecCCcccC------------CCCeeE----ecchH--HHhHHHHHHHhccCCeEEEEECCcchH
Q 043022 269 KA-----PENFRLDFAVSREQKNE------------KGEKMY----IQTRM--AEYANELWELLKKDNTYVYMCGLRGME 325 (361)
Q Consensus 269 ~~-----~~~~~~~~~~s~~~~~~------------~g~~~~----v~~~l--~~~~~~~~~~l~~~~~~vyvCGp~~m~ 325 (361)
.+ ++++++++++|++.... .+..++ ...++ ....+.+......++..||+|||++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gR~~~~~~~~~~~~~~~~~~~~v~~CGP~~m~ 159 (186)
T 3a1f_A 80 QMQERNNAGFLSYNIYLTGWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCGPEALA 159 (186)
T ss_dssp HHHHTTCTTSEEEEEEETTC-----------------------CCEEESCCCHHHHHHHHHHHSTTCEEEEEEESCHHHH
T ss_pred HHhhccCCCeEEEEEEEcCCCCCcccceeeccccccccCCCCccccccCCCCHHHHHHHHHHhCCCCcEEEEEeCCHHHH
Confidence 64 44899999999863210 111110 00111 111222322222136789999999999
Q ss_pred HHHHHHHHHHHHc
Q 043022 326 KGIDDIMVSLAAN 338 (361)
Q Consensus 326 ~~v~~~L~~~g~~ 338 (361)
++++++|.+.+..
T Consensus 160 ~~v~~~l~~~g~~ 172 (186)
T 3a1f_A 160 ETLSKQSISNSES 172 (186)
T ss_dssp HHHHHHHHHTCCC
T ss_pred HHHHHHHHHhhcc
Confidence 9999999998763
No 37
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=92.03 E-value=0.29 Score=46.22 Aligned_cols=49 Identities=18% Similarity=0.365 Sum_probs=43.4
Q ss_pred CCCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCC
Q 043022 82 KTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGV 130 (361)
Q Consensus 82 ~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~ 130 (361)
...+.++|+.+.+++...+..++++++|+.+..+.|.||+++.|.+.+.
T Consensus 4 ~~~~~a~v~~n~~Lt~~~~~~~~~hie~~l~~~~~Y~~GD~l~v~p~N~ 52 (393)
T 4dql_A 4 HGAFSTNVVASKELQQPGSARSTRHLEIELPKEASYQEGDHLGVIPRNY 52 (393)
T ss_dssp -CCEEEEEEEEEECSCTTCSCCEEEEEEECCTTCCCCTTCEEEECCCCC
T ss_pred CCcEEEEEEeEEEcCCCCCCceEEEEEEECCCCCccCCCCEEEEEccCC
Confidence 3468899999999999878888999999998889999999999998764
No 38
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=91.83 E-value=0.32 Score=47.99 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=43.4
Q ss_pred cccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCC
Q 043022 78 KFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGV 130 (361)
Q Consensus 78 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~ 130 (361)
.|....++.++|+.+.+++......++++|+|+.+. .+.|.||+++.|.+.+.
T Consensus 108 ~~~~~~~~~a~v~~~~~Lt~~~~~r~v~hield~~~~~l~Y~~GD~l~V~P~N~ 161 (539)
T 2qtl_A 108 VTSADPVFQVPISKAVQLTTNDAIKTTLLVELDISNTDFSYQPGDAFSVICPNS 161 (539)
T ss_dssp -----CCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECCCC
T ss_pred CCCCCCCEEEEEEeeEEcCCCCCCCcEEEEEEecCCCCcCcCCCCEEEEEeCCC
Confidence 456677999999999999998888899999999876 57899999999998764
No 39
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=91.17 E-value=0.31 Score=46.72 Aligned_cols=53 Identities=21% Similarity=0.352 Sum_probs=46.0
Q ss_pred cccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC--ccccCCCcEEEEecCCC
Q 043022 78 KFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG--EVPYKEGQSIGVIADGV 130 (361)
Q Consensus 78 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~--~l~~~pGQ~v~l~~~~~ 130 (361)
.|....++.++|+++.+++...+..++++++|+... .+.|.||+++.|.+.+.
T Consensus 24 ~~~~~~~~~a~v~~~~~l~~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~p~N~ 78 (435)
T 1f20_A 24 NVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNH 78 (435)
T ss_dssp HHHTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCC
T ss_pred ccccCCcEEEEEEeEEECCCCCCCceEEEEEEECCCCCCCcCCCCCEEEEEecCC
Confidence 456677999999999999998888889999999854 58999999999998764
No 40
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=89.73 E-value=0.65 Score=44.75 Aligned_cols=52 Identities=17% Similarity=0.404 Sum_probs=44.6
Q ss_pred cccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCC
Q 043022 78 KFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGV 130 (361)
Q Consensus 78 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~ 130 (361)
.|....++.|+|+.+.+++.. +..++++++|+.+. .+.|.||+++.|.+.+.
T Consensus 56 ~~~~~~p~~a~v~~n~~Lt~~-~~r~~~hie~dl~~s~l~Y~~GD~l~V~p~N~ 108 (458)
T 3qfs_A 56 PFDAKNPFLAAVTTNRKLNQG-TERHLMHLELDISDSKIRYESGDHVAVYPAND 108 (458)
T ss_dssp CCCSSSCEEEEEEEEEECCSS-SSSCEEEEEEECTTSCCCCCTTCEEEECCCCC
T ss_pred CCCCCCCEEEEEEEEEEcCCC-CCCCEEEEEEEeCCCCcccCCCCEEEEEeeCC
Confidence 466677999999999999984 56789999999865 69999999999998764
No 41
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=83.76 E-value=2 Score=43.63 Aligned_cols=51 Identities=22% Similarity=0.360 Sum_probs=43.8
Q ss_pred cCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC--ccccCCCcEEEEecCCC
Q 043022 80 KPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG--EVPYKEGQSIGVIADGV 130 (361)
Q Consensus 80 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~--~l~~~pGQ~v~l~~~~~ 130 (361)
....++.++|+.+.+++......++++|+|+... .+.|.||+++.|.+.+.
T Consensus 247 ~~~~~~~a~v~~~~~Lt~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~P~N~ 299 (688)
T 1tll_A 247 HKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNH 299 (688)
T ss_dssp TTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCC
T ss_pred ccCCceEEEEEeeeecCCCCCCceEEEEEEecCCCCCCccCCCCEEEEecCCC
Confidence 3446889999999999988778889999999854 58999999999998764
No 42
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=81.50 E-value=2.8 Score=41.91 Aligned_cols=51 Identities=18% Similarity=0.416 Sum_probs=42.2
Q ss_pred ccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCC
Q 043022 79 FKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGV 130 (361)
Q Consensus 79 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~ 130 (361)
|....++.++|+.+.+++.. +..++++++|+.+. .+.|.||+++.|.+.+.
T Consensus 217 ~~~~~~~~a~v~~n~~Lt~~-~~~~~~hie~~~~~~~~~Y~~GD~l~V~p~N~ 268 (618)
T 3qe2_A 217 FDAKNPFLAAVTTNRKLNQG-TERHLMHLELDISDSKIRYESGDHVAVYPAND 268 (618)
T ss_dssp CSSSSCEEEEEEEEEECSCC-SSSCEEEEEEECTTSCCCCCTTCEEEECCCCC
T ss_pred cccCCcEEEEEEeEEEcCCC-CCCcEEEEEEEcCCCCcccccCCEEEEEcCCC
Confidence 33455799999999999865 45689999999865 68999999999998764
No 43
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=80.86 E-value=2.4 Score=42.94 Aligned_cols=51 Identities=20% Similarity=0.403 Sum_probs=42.4
Q ss_pred ccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCC
Q 043022 79 FKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGV 130 (361)
Q Consensus 79 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~ 130 (361)
|....++.++|+...+++. ....++++|+|+... .+.|.||+++.|.+.+.
T Consensus 254 ~~~~~p~~a~v~~~~~L~~-~~~~~~~hie~d~~~~~~~Y~~GD~l~V~P~N~ 305 (682)
T 2bpo_A 254 FDLSQPYIAPIVKSRELFS-SNDRNCIHSEFDLSGSNIKYSTGDHLAVWPSNP 305 (682)
T ss_dssp CBTTBCCCEEEEEEEECCC-CSSCCEEEEEEECTTBTCCCCTTCEEEECCCCC
T ss_pred ccCCCceEEEEEEEEEccC-CCCCCEEEEEEEcCCCCceecCCCEEEEEcCCC
Confidence 3345678899999999998 566789999999854 78899999999998764
No 44
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=62.60 E-value=7.2 Score=35.88 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=21.7
Q ss_pred CcEEEEecCCc--hhhHHHHHHHHHhhc
Q 043022 210 ATVIMLATGTG--IAPFRGFLWKMFFEK 235 (361)
Q Consensus 210 ~~iv~Ia~GtG--iaP~~~~l~~~~~~~ 235 (361)
++|++.||||| |-|.+++.+++.+++
T Consensus 3 ~~i~i~~GGTgGHi~palala~~L~~~g 30 (365)
T 3s2u_A 3 GNVLIMAGGTGGHVFPALACAREFQARG 30 (365)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTT
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHhCC
Confidence 46889999997 789999999987654
No 45
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=61.64 E-value=0.28 Score=46.04 Aligned_cols=34 Identities=9% Similarity=0.140 Sum_probs=31.2
Q ss_pred CCcccccccceeeeeeec-cceeEEEeeecccCcc
Q 043022 27 PDRITFRKVPFYYKDVST-GGRVVSVRAQVTTEAP 60 (361)
Q Consensus 27 p~~~t~~~~~~~y~di~~-~~~~~~~~~~~~~~~~ 60 (361)
+.|+|++++|++|+||+. +++++..+++++++..
T Consensus 81 ~~~~tl~~~l~~~~di~~p~~~~l~~la~~~~~~~ 115 (374)
T 1ddg_A 81 GKTLPLNEALQWHFELTVNTANIVENYATLTRSET 115 (374)
T ss_dssp TEEEEHHHHHHHHBCCSCCCHHHHHHHHHHHTCTT
T ss_pred CCCccHHHHHHhcccCCCCCHHHHHHHHHHCCCHH
Confidence 469999999999999999 9999999999998876
No 46
>3ddy_A Lumazine protein, LUMP; luminescent bacteria, lumazine PR riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi}
Probab=40.35 E-value=1.2e+02 Score=24.95 Aligned_cols=79 Identities=10% Similarity=0.098 Sum_probs=51.1
Q ss_pred CCeeEEEEeEeeecCCCCCCceEEEEeeCCCcc-c-cCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEE
Q 043022 83 TPYIGRCLLNTKITGDDAPGETWHMVFSTEGEV-P-YKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSL 160 (361)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l-~-~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~ 160 (361)
-.-.++|+++++... .+.++|+.|..+ + ..++.+|.+. +. ..|++... ++.+.+
T Consensus 102 Vdg~g~i~~i~~~~~------~~~~~i~~p~~l~~~i~~KgSIavd--Gv----------SLTV~~v~------~~~f~v 157 (186)
T 3ddy_A 102 IKGTALVAAIEENDA------GFSVLIDIPKGLAENLTVKDDIGID--GI----------SLPITDMS------DSIITL 157 (186)
T ss_dssp CCEEEEEEEEECCSS------EEEEEEECCTTTCSCCCTTCEEEET--TE----------EEECCEEE------TTEEEE
T ss_pred EeEEEEEEEEEECCC------eEEEEEEcCHHHhhccccCcEEEEE--eE----------EEEEEeec------CCEEEE
Confidence 344678888877654 688999988754 4 5677766554 22 57787763 455444
Q ss_pred EEEEeeEecCCCceecCccchhhhcCCCCCEEEEEc
Q 043022 161 CVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITG 196 (361)
Q Consensus 161 ~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~g 196 (361)
. ..| .-.--.-|..+++||.|.|+-
T Consensus 158 ~--lIp---------~Tl~~T~l~~~~~Gd~VNlE~ 182 (186)
T 3ddy_A 158 N--YSR---------DLLASTNIASLAKDVKVNVEI 182 (186)
T ss_dssp E--EEG---------GGGGTSSGGGCCTTCEEEEEE
T ss_pred E--EcH---------HHHhhcccccCccCCEEEEEE
Confidence 4 444 222233466799999999975
No 47
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=37.47 E-value=14 Score=29.46 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=31.8
Q ss_pred cCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCC----CcEEEEecCCch
Q 043022 176 KGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPN----ATVIMLATGTGI 221 (361)
Q Consensus 176 ~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~----~~iv~Ia~GtGi 221 (361)
+|.....+.+ ++.|++|.|+|-....-....+.. -|+|-|..|+|-
T Consensus 94 Gg~lAE~i~~ylkkG~rVlVeGRLrmn~~~d~~gkk~Y~~p~i~V~~~~g~ 144 (148)
T 3stb_C 94 DSDYSSRVKEQLRDGEWFLVTGRLRMVPQYDGSMRKYYHYPVIQVHPGCGS 144 (148)
T ss_dssp SHHHHHHHHHHCCTTCEEEEEEEEEEEEEEETTTTEEEEEEEEEECBTTBE
T ss_pred CChHHHHHHHHhcCCCEEEEEEEEEcceeECCCCCEEeeccEEEEeCCcce
Confidence 4577888887 999999999987543222111111 378999999984
No 48
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=32.56 E-value=43 Score=22.10 Aligned_cols=38 Identities=11% Similarity=0.137 Sum_probs=31.0
Q ss_pred CCcchHHHHHHHHHHHHHccCCCHHHHHHHH-HHcCCee
Q 043022 320 GLRGMEKGIDDIMVSLAANDGIDWLDYKKQL-KKSEQWN 357 (361)
Q Consensus 320 Gp~~m~~~v~~~L~~~g~~~~~~~~~~~~~l-~~~~r~~ 357 (361)
|+....++..+.|.+.+++..-.++..++.+ .++.||.
T Consensus 1 ~~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY~ 39 (59)
T 2b7e_A 1 GAMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYW 39 (59)
T ss_dssp CTTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHH
T ss_pred ChhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCccc
Confidence 5556677788888888888888899999999 8888884
No 49
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=32.45 E-value=41 Score=30.21 Aligned_cols=49 Identities=10% Similarity=-0.070 Sum_probs=32.3
Q ss_pred CCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCC
Q 043022 81 PKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADG 129 (361)
Q Consensus 81 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~ 129 (361)
|...+.++|..+............+.+++..+. .-.++||+++.+.+..
T Consensus 221 ~~~~~~g~V~~i~~~~~~~~~~~~~~v~i~~~~~~~~l~~G~~~~v~i~~ 270 (341)
T 3fpp_A 221 QLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQL 270 (341)
T ss_dssp SSSCBCCCEEEECSSCCBSSSCBCCEEEEEEECSSSCCCTTCEEEEEEES
T ss_pred CCCEEEEEEEEEecCccccCceEEEEEEEEeCCCccccCCCCEEEEEEEE
Confidence 345678888888765443333334566666554 3448999999999754
No 50
>3ddy_A Lumazine protein, LUMP; luminescent bacteria, lumazine PR riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi}
Probab=28.95 E-value=2.4e+02 Score=23.12 Aligned_cols=77 Identities=12% Similarity=0.013 Sum_probs=51.5
Q ss_pred eeEEEEeEeeecCCCCCCceEEEEeeCCCc-cc-cCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEE
Q 043022 85 YIGRCLLNTKITGDDAPGETWHMVFSTEGE-VP-YKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCV 162 (361)
Q Consensus 85 ~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~-l~-~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V 162 (361)
-.++|.++++... ..+++++.|.. ++ ...|+.|.+. +. -.|+... +++.+.+.+
T Consensus 8 ~vG~V~~i~~~~~------~~~l~i~~~~~~~~~~~~GdSIAvn--Gv----------CLTV~~~------~~~~f~vdv 63 (186)
T 3ddy_A 8 GRGVIRSISKSED------SQRHGIAFPEGMFQLVDVDTVMLVN--GC----------SNTVVRI------LGDMVYFDI 63 (186)
T ss_dssp EEEEEEEEEECSS------CEEEEEECCTTTGGGCCTTCEEEET--TE----------EEEEEEE------ETTEEEEEE
T ss_pred eEEEEEEEEECCC------cEEEEEEeChHHhccCCCCCeEEEe--eE----------EEEEEEE------cCCEEEEEh
Confidence 3567888777655 58899998764 44 7899987775 11 4666665 345666666
Q ss_pred EEeeEecCCCceecCccchhhhcCCCCCEEEEEcc
Q 043022 163 KRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGP 197 (361)
Q Consensus 163 ~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP 197 (361)
. .-.--.-|..+++|+.|.++..
T Consensus 64 -~-----------ETl~~T~Lg~l~~G~~VNLEra 86 (186)
T 3ddy_A 64 -D-----------QALGTTTFDGLKEGDQVNLEIH 86 (186)
T ss_dssp -C-----------TTTTTSSGGGCCTTCEEEEECC
T ss_pred -H-----------HhhhhCchhhcCCCCEEEECCC
Confidence 3 2333344667999999999843
No 51
>3a35_A Lumazine protein, LUMP; luminous bacteria, homologue of riboflavin synthase, luminescent protein; HET: RBF; 1.42A {Photobacterium kishitanii} PDB: 3a3b_B* 3a3g_A*
Probab=25.91 E-value=2.8e+02 Score=22.83 Aligned_cols=77 Identities=14% Similarity=0.135 Sum_probs=49.0
Q ss_pred CeeEEEEeEeeecCCCCCCceEEEEeeCCCcc-c-cCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEE
Q 043022 84 PYIGRCLLNTKITGDDAPGETWHMVFSTEGEV-P-YKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLC 161 (361)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l-~-~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~ 161 (361)
.-.++|+++++... -+.++|+.|+.+ + ..+..+|.+. +. +.|++... ++. |.
T Consensus 103 dg~g~i~~~~~~~~------~~~~~~~~p~~~~~yi~~KGsIavd--Gv----------SLTV~~v~------~~~--f~ 156 (190)
T 3a35_A 103 KGVATVDNITEEED------RLKVYIKIPKDLIENILSEDHIGIN--GV----------SHSIEEIS------DDI--IF 156 (190)
T ss_dssp CEEEEEEEEEEETT------EEEEEEECCTTSCSCCCTTSEEEET--TE----------EEECCEEE------TTE--EE
T ss_pred eEEEEEEEEEEcCC------eEEEEEEeCHHHHhcCCcCCEEEEC--CE----------EEEEEEec------CCE--EE
Confidence 44688888888765 688999988754 4 3555655543 22 57777763 344 44
Q ss_pred EEEeeEecCCCceecCccchhhhcCCCCCEEEEE
Q 043022 162 VKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKIT 195 (361)
Q Consensus 162 V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~ 195 (361)
|...| .-.--.-|..+++||.|.++
T Consensus 157 v~lIP---------~T~~~T~l~~~~~Gd~VNlE 181 (190)
T 3a35_A 157 INYPK---------NLSITTNLGTLEKGSDVNVE 181 (190)
T ss_dssp EEEET---------THHHHSGGGGCCTTCEEEEE
T ss_pred EEEeH---------HHHhhcccccCcCCCEEEEe
Confidence 44444 22222335669999999997
No 52
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=24.87 E-value=4.2e+02 Score=24.55 Aligned_cols=111 Identities=8% Similarity=0.050 Sum_probs=58.8
Q ss_pred CcEEEEecCCchhhHHHHHHHHH------hhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCC
Q 043022 210 ATVIMLATGTGIAPFRGFLWKMF------FEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSRE 283 (361)
Q Consensus 210 ~~iv~Ia~GtGiaP~~~~l~~~~------~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~ 283 (361)
.+.+++=++.=-..+.++++.+. .... .+++++++|+-..+| +.+.+..+.. .+...+.+..+
T Consensus 311 ~~~vi~D~AHNp~a~~all~~l~~~~~~~~~~~-----~~r~i~V~G~~~dkd--~~~~~~~l~~----~~~~v~~~~~~ 379 (437)
T 3nrs_A 311 QPLLILDVAHNPHAARYLVNRLAQVINPVNASK-----QGKVRAVVGMLSDKD--IAGTLACLSE----RVDEWYCAPLE 379 (437)
T ss_dssp TTEEEECCCCSHHHHHHHHHHHHHTC-------------CCEEEEECCBTTBC--HHHHHHHHTT----TCCEEEECCCS
T ss_pred CCeEEEECCCCHHHHHHHHHHHHhhcchhhhcC-----CCCEEEEEeCCCCCC--HHHHHHHHHh----cCCEEEEeCCC
Confidence 35677777766667777777665 2211 257888889755444 3455555543 22222333322
Q ss_pred cc-cCC-------CCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHH
Q 043022 284 QK-NEK-------GEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIM 332 (361)
Q Consensus 284 ~~-~~~-------g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L 332 (361)
.. ... -.......-+.+..+...+... ++..|++||+--|+.++++.+
T Consensus 380 ~~r~~~~~~l~~~~~~~~~~~d~~~Ai~~a~~~a~-~~D~VLv~GS~~~v~~~~~~~ 435 (437)
T 3nrs_A 380 GPRGASAGQLAEHLVSARQFSDVETAWRQAMQDAD-TQDVVIVCGSFHTVAHVMAAL 435 (437)
T ss_dssp STTBCCHHHHHTTCSSCEECSSHHHHHHHHHHHCC-TTCEEEEESSHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHhhCCCcCCHHHHHHHHHHhcC-CCCeEEEEehHHHHHHHHHHh
Confidence 11 000 0000122223333444444444 578899999999988887654
No 53
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C
Probab=23.42 E-value=1.6e+02 Score=21.77 Aligned_cols=41 Identities=20% Similarity=0.269 Sum_probs=21.7
Q ss_pred hhhhc-CCCCCEEEEEccCCCC-cCCC-CCC--CCcEEEEecCCch
Q 043022 181 NFLCD-LKPGAEVKITGPVGKE-MLMP-RDP--NATVIMLATGTGI 221 (361)
Q Consensus 181 ~~L~~-l~~G~~v~i~gP~G~~-~~~~-~~~--~~~iv~Ia~GtGi 221 (361)
..|.+ ++.|..+.+.|-.--. ...+ .+. .-|.|-+..|+|-
T Consensus 55 ~~lk~~lk~g~~v~V~GrLRm~p~~d~~~kkyy~yP~IqV~pp~G~ 100 (105)
T 4dka_C 55 SLLKDQVKLGSRVLVQGTLRMNRHVDDVSKRLHAYPFIQVVPPLGY 100 (105)
T ss_dssp -----CCCTTCEEEEEEEEECCCEECTTTCSEECCCEEEEC--CCE
T ss_pred HHHHHHHhCCCEEEEEeEEEeeeccccccceeccCCEEEEECCCcE
Confidence 55776 9999999998853321 1111 111 2489999999984
No 54
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=22.01 E-value=2.9e+02 Score=21.60 Aligned_cols=34 Identities=9% Similarity=0.081 Sum_probs=21.9
Q ss_pred HHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHH
Q 043022 298 MAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIM 332 (361)
Q Consensus 298 l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L 332 (361)
..+..+.+.+... ++..|+++|+.+|-.-....+
T Consensus 125 ~~eai~~~~~~~~-~gDvVLv~Gsg~~~~~~~~l~ 158 (163)
T 3mvn_A 125 VDELVMRIVQQAK-PNDHILIMSNGAFGGIHQKLL 158 (163)
T ss_dssp HHHHHHHHHHHCC-TTCEEEEECSSCGGGHHHHHH
T ss_pred HHHHHHHHHHhCC-CCCEEEEECCCCHHHHHHHHH
Confidence 3444455555555 688999999988765554444
No 55
>4a54_B DCP2, mRNA decapping complex subunit 2; RNA binding protein-hydrolase complex; NMR {Schizosaccharomyces pombe}
Probab=21.92 E-value=45 Score=20.17 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=13.6
Q ss_pred ccccCCCCcccceecCCCc
Q 043022 11 PTSKSTSLPTRTSIISPDR 29 (361)
Q Consensus 11 ~~~~~~~~~~~~~~p~p~~ 29 (361)
+++..+|..+|+|-.||.|
T Consensus 27 sstapsdlatpqpstfpqp 45 (52)
T 4a54_B 27 SSTAPSDLATPQPSTFPQP 45 (52)
T ss_dssp CCCCSCSSSCCCCCCCCCC
T ss_pred ccCCcccccCCCCCCCCCC
Confidence 4455667778888888876
No 56
>2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=20.23 E-value=1.1e+02 Score=21.77 Aligned_cols=33 Identities=15% Similarity=0.613 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHcCCee
Q 043022 325 EKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWN 357 (361)
Q Consensus 325 ~~~v~~~L~~~g~~~~~~~~~~~~~l~~~~r~~ 357 (361)
+...+..|.++.......|.+--..|+++.||-
T Consensus 20 ~~~F~aLL~DlIr~pd~sW~Eakr~LrKD~R~~ 52 (85)
T 2dof_A 20 IQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWE 52 (85)
T ss_dssp HHHHHHHHHHHTCCSSCCHHHHHHHHHHSSTHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHhccCcccc
Confidence 345566777777788899999999999999984
Done!