BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043025
(403 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IQ2|A Chain A, Human Sorting Nexin 7, Phox Homology (Px) Domain
pdb|3IQ2|B Chain B, Human Sorting Nexin 7, Phox Homology (Px) Domain
Length = 138
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 73/115 (63%), Gaps = 2/115 (1%)
Query: 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGI 85
L ++V +P ++ +I+YR+ITKT+ E+ E V RRY DF+WL+ +L E + +
Sbjct: 9 LFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTL 68
Query: 86 FIPPLPEKSAVEKF--RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138
IPPLPEK V+ RF+ +FIE RR+ L F+NRIA HP L +ED K FL A
Sbjct: 69 IIPPLPEKFIVKGMVERFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTA 123
>pdb|2I4K|A Chain A, Solution Structure Of The Px Domain Of Sorting Nexin 1
Length = 128
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 80/125 (64%), Gaps = 10/125 (8%)
Query: 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY--K 83
L+V +TDP K+G+G+ AY++Y+V T+T+ P ++ + V RR+SDF+ L ++L EK+
Sbjct: 4 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQN 63
Query: 84 GIFIPPLPEKSAVEKFRF--------SAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTF 135
G +PP PEKS + + SAEF+E RR L+ ++ RI +HP + Q D++ F
Sbjct: 64 GFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREF 123
Query: 136 LQADE 140
L+ +E
Sbjct: 124 LEKEE 128
>pdb|2CSK|A Chain A, Solution Structure Of Px Domain From Human Snx12
Length = 146
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 72/128 (56%), Gaps = 10/128 (7%)
Query: 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG 84
+L + + +P +G G + +Y V +TN P ++ E V RRYSDF WL++ L E+
Sbjct: 10 FLEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNEL-ERDSK 68
Query: 85 IFIPPLPEKSAVEKFRFSAE-------FIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQ 137
I +PPLP K+ + F + FIE RRQGL+ F+N+IA HP Q L FLQ
Sbjct: 69 IVVPPLPGKALKRQLPFRGDEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQ 128
Query: 138 ADEETMER 145
EE ++R
Sbjct: 129 --EEAIDR 134
>pdb|4AKV|A Chain A, Crystal Structure Of Human Sorting Nexin 33 (Snx33)
pdb|4AKV|B Chain B, Crystal Structure Of Human Sorting Nexin 33 (Snx33)
Length = 386
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 83/359 (23%), Positives = 149/359 (41%), Gaps = 40/359 (11%)
Query: 26 LSVSVTDPVKLGN--GVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYK 83
+ SV DP K G+++YISY+ +T T+ V RRY F WL +RL K+
Sbjct: 42 FACSVEDPTKQTKFKGIKSYISYK-LTPTH------AASPVYRRYKHFDWLYNRLLHKFT 94
Query: 84 GIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETM 143
I +P LPEK A RF +FIE R++ L L+++ + SHP L Q E + FL ++
Sbjct: 95 VISVPHLPEKQATG--RFEEDFIEKRKRRLILWMDHMTSHPVLSQYEGFQHFLSCLDDKQ 152
Query: 144 ERLRSQDTGYFKKKPADLMQIFK--DVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELE 201
++ + + A + F+ + DV E V+ +K+ + +L
Sbjct: 153 WKMGKRRAEKDEMVGASFLLTFQIPTEHQDLQDV----EDRVDTFKAFSKKMDDSVLQLS 208
Query: 202 NHLAE-AQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVK 260
+E +KH K ++LG + + ++ +AL A S G EA+
Sbjct: 209 TVASELVRKHVGGFRKEFQKLGSAFQAISHSFQMDPPFCSEALNSAISHTGRTYEAIGEM 268
Query: 261 LQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLT 320
+ L + L Y + + I + AF ++ E+ ++ +
Sbjct: 269 FAEQPKNDLFQMLDTLSLYQGLLSNFPDIIHLQKGAF---AKVKESQRMSD--------- 316
Query: 321 RSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQ 379
E + ++ E++ RR + + E+ F +++ LD N+ + Q
Sbjct: 317 ----------EGRMVQDEADGIRRRCRVVGFALQAEMNHFHQRRELDFKHMMQNYLRQQ 365
>pdb|1OCS|A Chain A, Crystal Structure Of The Yeast Px-Doamin Protein Grd19p
(Sorting Nexin3) Complexed To
Phosphatidylinosytol-3-Phosphate.
pdb|1OCU|A Chain A, Crystal Structure Of The Yeast Px-Domain Protein Grd19p
(Sorting Nexin 3) Complexed To
Phosphatidylinosytol-3-Phospahte.
pdb|1OCU|B Chain B, Crystal Structure Of The Yeast Px-Domain Protein Grd19p
(Sorting Nexin 3) Complexed To
Phosphatidylinosytol-3-Phospahte
Length = 162
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 68/126 (53%), Gaps = 11/126 (8%)
Query: 25 YLSVSVTDP-VKLGNGVQA---YISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFE 80
+L + V +P + NG+ + + Y +I +TN P + V RRYSDF + R L +
Sbjct: 35 FLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKXLIK 94
Query: 81 -----KYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQ-SEDLKT 134
+ + +P LP K + RFS E IE RRQGL+ ++ +A HP LQ S+ L
Sbjct: 95 EISMLNHPKVMVPHLPGKILLSN-RFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVR 153
Query: 135 FLQADE 140
F++A++
Sbjct: 154 FIEAEK 159
>pdb|3HPC|X Chain X, Crystal Structure Of Snx5-Px Domain In P21 Space Group
Length = 161
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 29/127 (22%)
Query: 44 ISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEK--YKGIFIPPLPEKSAVEKFR- 100
+ + V TKT P +Q PE V R++ DFVWL D L E Y G+ IPP P K + R
Sbjct: 26 VKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDFDGPRE 85
Query: 101 -----------------------FSAEFIEMRRQGL---DLFVNRIASHPELQQSEDLKT 134
AE++ + ++ + ++F+ R++SHP L + +
Sbjct: 86 KMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHV 145
Query: 135 FLQADEE 141
FL+ D++
Sbjct: 146 FLEYDQD 152
>pdb|3HPB|A Chain A, Crystal Structure Of Snx5-Px Domain In P212121 Space Group
Length = 161
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 29/127 (22%)
Query: 44 ISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEK--YKGIFIPPLPEKS------- 94
+ + V TKT P +Q PE V R++ DFVWL D L E Y G+ IPP P K
Sbjct: 26 VKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDFDGPRE 85
Query: 95 -----------------AVEKFRFSAEFIEMRRQGL---DLFVNRIASHPELQQSEDLKT 134
A K AE++ + ++ + ++F+ R++SHP L + +
Sbjct: 86 KXQKLGEGEGSXTKEEFAKXKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHV 145
Query: 135 FLQADEE 141
FL+ D++
Sbjct: 146 FLEYDQD 152
>pdb|3DYU|A Chain A, Crystal Structure Of Snx9px-Bar (230-595), H32
pdb|3DYU|B Chain B, Crystal Structure Of Snx9px-Bar (230-595), H32
pdb|3DYU|C Chain C, Crystal Structure Of Snx9px-Bar (230-595), H32
Length = 366
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 88/350 (25%), Positives = 148/350 (42%), Gaps = 41/350 (11%)
Query: 30 VTDPVKLGN--GVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY-KGIF 86
V DP K G+++YI Y+ +T TN + V RY F WL +RL K+ I
Sbjct: 25 VADPRKGSKMYGLKSYIEYQ-LTPTN------TNRSVNHRYKHFDWLYERLLVKFGSAIP 77
Query: 87 IPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERL 146
IP LP+K RF EFI+MR + L ++ R+ HP + +SE + FL +E
Sbjct: 78 IPSLPDKQVTG--RFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDE----- 130
Query: 147 RSQDTGYFKKKPADL--MQIFKDVQSKVSDVVLGK-EKPVEESNPEYEKLKHYIFELENH 203
+ TG K + +L + IF ++ + D+ L + E+ E + + + EL
Sbjct: 131 KEWKTGKRKAERDELAGVMIFSTMEPEAPDLDLVEIEQKCEAVGKFTKAMDDGVKEL--- 187
Query: 204 LAEAQKHAYR----LVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSE---A 256
L Q+H R L K ++++G++L G L A +E G E +
Sbjct: 188 LTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIAS 247
Query: 257 LSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDK 316
L + ++ LM K ++ I T ++ +L T K+
Sbjct: 248 LVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKIT------ 301
Query: 317 LMLTRSDKVGEAEIEYKELKAE----SEDSTRRFETIVRLMNEEIVRFQE 362
+ + + V I L+AE + + +++RL E+ V+F E
Sbjct: 302 -LQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYE 350
>pdb|2RAJ|A Chain A, So4 Bound Px-Bar Membrane Remodeling Unit Of Sorting Nexin
9
pdb|2RAK|A Chain A, Pi(3)p Bound Px-Bar Membrane Remodeling Unit Of Sorting
Nexin 9
Length = 392
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 88/350 (25%), Positives = 148/350 (42%), Gaps = 41/350 (11%)
Query: 30 VTDPVKLGN--GVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY-KGIF 86
V DP K G+++YI Y+ +T TN + V RY F WL +RL K+ I
Sbjct: 51 VADPRKGSKMYGLKSYIEYQ-LTPTN------TNRSVNHRYKHFDWLYERLLVKFGSAIP 103
Query: 87 IPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERL 146
IP LP+K RF EFI+MR + L ++ R+ HP + +SE + FL +E
Sbjct: 104 IPSLPDKQVTG--RFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDE----- 156
Query: 147 RSQDTGYFKKKPADL--MQIFKDVQSKVSDVVLGK-EKPVEESNPEYEKLKHYIFELENH 203
+ TG K + +L + IF ++ + D+ L + E+ E + + + EL
Sbjct: 157 KEWKTGKRKAERDELAGVMIFSTMEPEAPDLDLVEIEQKCEAVGKFTKAMDDGVKEL--- 213
Query: 204 LAEAQKHAYR----LVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSE---A 256
L Q+H R L K ++++G++L G L A +E G E +
Sbjct: 214 LTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIAS 273
Query: 257 LSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDK 316
L + ++ LM K ++ I T ++ +L T K+
Sbjct: 274 LVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKIT------ 327
Query: 317 LMLTRSDKVGEAEIEYKELKAE----SEDSTRRFETIVRLMNEEIVRFQE 362
+ + + V I L+AE + + +++RL E+ V+F E
Sbjct: 328 -LQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYE 376
>pdb|3DYT|A Chain A, Crystal Structure Of Snx9px-Bar (230-595), C2221
Length = 366
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 88/347 (25%), Positives = 144/347 (41%), Gaps = 35/347 (10%)
Query: 30 VTDPVKLGN--GVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY-KGIF 86
V DP K G+++YI Y+ +T TN + V RY F WL +RL K+ I
Sbjct: 25 VADPRKGSKXYGLKSYIEYQ-LTPTN------TNRSVNHRYKHFDWLYERLLVKFGSAIP 77
Query: 87 IPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERL 146
IP LP+K RF EFI+ R + L + R HP + +SE + FL +E
Sbjct: 78 IPSLPDKQVTG--RFEEEFIKXRXERLQAWXTRXCRHPVISESEVFQQFLNFRDE----- 130
Query: 147 RSQDTGYFKKKPADL--MQIFKDVQSKVSDVVLGK-EKPVEESNPEYEKLKHYIFELENH 203
+ TG K + +L + IF + + D+ L + E+ E + + EL
Sbjct: 131 KEWKTGKRKAERDELAGVXIFSTXEPEAPDLDLVEIEQKCEAVGKFTKAXDDGVKEL--- 187
Query: 204 LAEAQKHAYR----LVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSV 259
L Q+H R L K ++++G++L G L A +E G E ++
Sbjct: 188 LTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIAS 247
Query: 260 KLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLML 319
+ + + L E +Y + I A + E + + +I L
Sbjct: 248 LVAEQPKKDLHFLXECNHEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKITLQD--- 304
Query: 320 TRSDKVGEAEIEYKELKAESE--DSTRRFE--TIVRLMNEEIVRFQE 362
+ + V I L+AE S R ++ +++RL E+ V+F E
Sbjct: 305 -KQNXVKRVSIXSYALQAEXNHFHSNRIYDYNSVIRLYLEQQVQFYE 350
>pdb|2RAI|A Chain A, The Px-Bar Membrane Remodeling Unit Of Sorting Nexin 9
pdb|2RAI|B Chain B, The Px-Bar Membrane Remodeling Unit Of Sorting Nexin 9
Length = 392
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 88/347 (25%), Positives = 144/347 (41%), Gaps = 35/347 (10%)
Query: 30 VTDPVKLGN--GVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY-KGIF 86
V DP K G+++YI Y+ +T TN + V RY F WL +RL K+ I
Sbjct: 51 VADPRKGSKXYGLKSYIEYQ-LTPTN------TNRSVNHRYKHFDWLYERLLVKFGSAIP 103
Query: 87 IPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERL 146
IP LP+K RF EFI+ R + L + R HP + +SE + FL +E
Sbjct: 104 IPSLPDKQVTG--RFEEEFIKXRXERLQAWXTRXCRHPVISESEVFQQFLNFRDE----- 156
Query: 147 RSQDTGYFKKKPADL--MQIFKDVQSKVSDVVLGK-EKPVEESNPEYEKLKHYIFELENH 203
+ TG K + +L + IF + + D+ L + E+ E + + EL
Sbjct: 157 KEWKTGKRKAERDELAGVXIFSTXEPEAPDLDLVEIEQKCEAVGKFTKAXDDGVKEL--- 213
Query: 204 LAEAQKHAYR----LVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSV 259
L Q+H R L K ++++G++L G L A +E G E ++
Sbjct: 214 LTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIAS 273
Query: 260 KLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLML 319
+ + + L E +Y + I A + E + + +I L
Sbjct: 274 LVAEQPKKDLHFLXECNHEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKITLQD--- 330
Query: 320 TRSDKVGEAEIEYKELKAESE--DSTRRFE--TIVRLMNEEIVRFQE 362
+ + V I L+AE S R ++ +++RL E+ V+F E
Sbjct: 331 -KQNXVKRVSIXSYALQAEXNHFHSNRIYDYNSVIRLYLEQQVQFYE 376
>pdb|1XTE|A Chain A, Crystal Structure Of Cisk-Px Domain
Length = 154
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 61 EKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF---RFSAEFIEMRRQGLDLFV 117
E V RRY++F D+L+ K F P + K ++ F +FI+ RR GL+ F+
Sbjct: 38 EWFVFRRYAEF----DKLYNSLKKQF-PAMALKIPAKRIFGDNFDPDFIKQRRAGLNEFI 92
Query: 118 NRIASHPELQQSEDLKTFLQADEETMERLRSQD 150
+ +PEL D++ FLQ D + S+D
Sbjct: 93 QNLVRYPELYNHPDVRAFLQMDSPRHQSDPSED 125
>pdb|1XTN|A Chain A, Crystal Structure Of Cisk-Px Domain With Sulfates
pdb|1XTN|B Chain B, Crystal Structure Of Cisk-Px Domain With Sulfates
Length = 120
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 61 EKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF---RFSAEFIEMRRQGLDLFV 117
E V RRY++F D+L+ K F P + K ++ F +FI+ RR GL+ F+
Sbjct: 38 EWFVFRRYAEF----DKLYNSLKKQF-PAMALKIPAKRIFGDNFDPDFIKQRRAGLNEFI 92
Query: 118 NRIASHPELQQSEDLKTFLQAD 139
+ +PEL D++ FLQ D
Sbjct: 93 QNLVRYPELYNHPDVRAFLQMD 114
>pdb|3LUI|A Chain A, Crystal Structure Of The Snx17 Px Domain With Bound
Sulphate
pdb|3LUI|B Chain B, Crystal Structure Of The Snx17 Px Domain With Bound
Sulphate
pdb|3LUI|C Chain C, Crystal Structure Of The Snx17 Px Domain With Bound
Sulphate
Length = 115
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG 84
+ S+ T+ +G AY++Y + G +R YS + L ++L ++Y
Sbjct: 5 HFSIPETESRSGDSGGSAYVAYNI-------HVNGVLHCRVR-YSQLLGLHEQLRKEYGA 56
Query: 85 IFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFL-QADEETM 143
+P P K + F + +E RR+ L+ ++ + P L SE +FL +A +ET
Sbjct: 57 NVLPAFPPK---KLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQETQ 113
Query: 144 E 144
+
Sbjct: 114 Q 114
>pdb|3FOG|A Chain A, Crystal Structure Of The Px Domain Of Sorting Nexin-17
(Snx17)
Length = 115
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 11/113 (9%)
Query: 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG 84
+ S+ T+ +G AY++Y + G +R YS + L ++L ++Y
Sbjct: 2 HFSIPETESRSGDSGGSAYVAYNI-------HVNGVLHCRVR-YSQLLGLHEQLRKEYGA 53
Query: 85 IFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQ 137
+P P K + F + +E RR+ L+ ++ + P L SE +FL+
Sbjct: 54 NVLPAFPPK---KLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLR 103
>pdb|1KMD|A Chain A, Solution Structure Of The Vam7p Px Domain
Length = 117
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 60 PEKIVIRRYSDFVWLRDRLFEKYKGIFIP-PLPEKSAVEKFRF-----SAEFIEMRRQGL 113
P K + +RYS+F L+ RL E+ G IP PEK V R+ E I+ RR GL
Sbjct: 27 PNKRLYKRYSEFWKLKTRL-ERDVGSTIPYDFPEKPGVLDRRWQRRYDDPEMIDERRIGL 85
Query: 114 DLFVNRIAS 122
+ F+N + +
Sbjct: 86 ERFLNELYN 94
>pdb|2LLA|A Chain A, Nmr Solution Structure Ensemble Of Domain 11 Of The
Echidna M6pIGF2R Receptor
Length = 140
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 207 AQKHAYRLVKRHRELGESLSDFGKAAKLLGACE-----GDALGKAFSELGMKSEALSVKL 261
A + + L RE G ++SD K + LG C G +G F G+K+ + KL
Sbjct: 12 ATGYVFDLNSLKRESGYTISDIRKGSIRLGVCGEVKDCGPGIGACFEGTGIKAGKWNQKL 71
Query: 262 QREAHQLLMNFEE 274
L + +E+
Sbjct: 72 SYVDQVLQLVYED 84
>pdb|2ETT|A Chain A, Solution Structure Of Human Sorting Nexin 22 Px Domain
Length = 128
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 59 GPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVN 118
G V RRYS+F L R+ + YK +P P K + +E RRQGL+ ++
Sbjct: 43 GRRHTVPRRYSEFHALHKRIKKLYK---VPDFPSKRLPN---WRTRGLEQRRQGLEAYIQ 96
Query: 119 RI 120
I
Sbjct: 97 GI 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,205,467
Number of Sequences: 62578
Number of extensions: 396702
Number of successful extensions: 1265
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1231
Number of HSP's gapped (non-prelim): 37
length of query: 403
length of database: 14,973,337
effective HSP length: 101
effective length of query: 302
effective length of database: 8,652,959
effective search space: 2613193618
effective search space used: 2613193618
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)