Query 043025
Match_columns 403
No_of_seqs 199 out of 1592
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 12:04:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043025.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043025hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2273 Membrane coat complex 100.0 7.1E-42 1.5E-46 340.9 41.0 366 25-396 109-497 (503)
2 cd07665 BAR_SNX1 The Bin/Amphi 100.0 2E-34 4.3E-39 252.7 32.4 227 171-397 5-233 (234)
3 cd07664 BAR_SNX2 The Bin/Amphi 100.0 3E-34 6.5E-39 253.0 32.2 227 171-397 5-233 (234)
4 cd07623 BAR_SNX1_2 The Bin/Amp 100.0 1.8E-32 3.9E-37 243.2 32.1 217 181-397 5-223 (224)
5 PF09325 Vps5: Vps5 C terminal 100.0 1.1E-31 2.4E-36 242.8 31.5 217 180-396 16-236 (236)
6 cd07627 BAR_Vps5p The Bin/Amph 100.0 2.2E-31 4.8E-36 235.4 31.6 211 185-395 1-215 (216)
7 cd07284 PX_SNX7 The phosphoino 100.0 3.6E-33 7.8E-38 219.5 12.3 113 26-138 1-115 (116)
8 cd07283 PX_SNX30 The phosphoin 100.0 6.6E-33 1.4E-37 218.3 12.5 114 26-139 1-116 (116)
9 cd07286 PX_SNX18 The phosphoin 100.0 1.1E-32 2.3E-37 218.0 11.7 111 26-145 1-116 (127)
10 cd07666 BAR_SNX7 The Bin/Amphi 100.0 8.2E-30 1.8E-34 224.2 29.9 240 123-395 1-242 (243)
11 KOG1660 Sorting nexin SNX6/TFA 100.0 1.7E-30 3.7E-35 230.1 24.9 344 25-399 25-398 (399)
12 cd07282 PX_SNX2 The phosphoino 100.0 3E-32 6.5E-37 217.6 12.4 113 26-138 1-123 (124)
13 cd06861 PX_Vps5p The phosphoin 100.0 4.2E-32 9E-37 214.1 12.8 112 26-139 1-112 (112)
14 cd06860 PX_SNX7_30_like The ph 100.0 5.7E-32 1.2E-36 214.3 12.6 114 26-139 1-116 (116)
15 cd07295 PX_Grd19 The phosphoin 100.0 7.7E-32 1.7E-36 212.7 13.0 114 25-140 1-115 (116)
16 cd07293 PX_SNX3 The phosphoino 100.0 8.5E-32 1.8E-36 214.2 13.1 114 25-139 1-121 (123)
17 cd07596 BAR_SNX The Bin/Amphip 100.0 2.6E-29 5.6E-34 224.7 30.6 210 186-395 2-217 (218)
18 cd07667 BAR_SNX30 The Bin/Amph 100.0 8E-29 1.7E-33 216.1 31.6 239 123-395 1-239 (240)
19 cd06894 PX_SNX3_like The phosp 100.0 1.4E-31 3.1E-36 213.5 12.5 114 25-139 1-121 (123)
20 cd07294 PX_SNX12 The phosphoin 100.0 2E-31 4.3E-36 213.7 13.3 117 24-141 2-125 (132)
21 cd07621 BAR_SNX5_6 The Bin/Amp 100.0 8.8E-29 1.9E-33 214.0 30.7 217 164-397 2-218 (219)
22 cd07285 PX_SNX9 The phosphoino 100.0 1.4E-31 3E-36 211.1 11.5 111 26-145 1-115 (126)
23 KOG2528 Sorting nexin SNX9/SH3 100.0 4.2E-30 9.1E-35 235.0 20.2 294 21-388 181-488 (490)
24 cd07663 BAR_SNX5 The Bin/Amphi 100.0 3.1E-28 6.7E-33 209.4 30.2 216 164-397 2-217 (218)
25 cd07624 BAR_SNX7_30 The Bin/Am 100.0 1.3E-28 2.8E-33 214.8 28.2 192 183-396 9-200 (200)
26 cd07662 BAR_SNX6 The Bin/Amphi 100.0 4.8E-28 1E-32 206.4 28.8 216 164-397 2-217 (218)
27 cd07625 BAR_Vps17p The Bin/Amp 100.0 1.3E-27 2.7E-32 209.0 30.8 214 182-395 12-229 (230)
28 COG5391 Phox homology (PX) dom 100.0 4.4E-27 9.5E-32 228.8 37.8 356 25-399 130-523 (524)
29 cd06863 PX_Atg24p The phosphoi 100.0 2.8E-30 6.1E-35 206.2 12.7 113 26-138 1-117 (118)
30 cd06865 PX_SNX_like The phosph 100.0 3.3E-30 7.1E-35 205.5 12.3 112 27-138 1-119 (120)
31 cd06891 PX_Vps17p The phosphoi 100.0 5.2E-30 1.1E-34 204.9 12.9 120 16-139 20-140 (140)
32 cd07281 PX_SNX1 The phosphoino 100.0 8.2E-30 1.8E-34 204.7 12.2 113 26-138 1-123 (124)
33 cd06898 PX_SNX10 The phosphoin 100.0 1.7E-29 3.7E-34 198.8 12.6 110 27-138 1-112 (113)
34 cd06862 PX_SNX9_18_like The ph 100.0 2.5E-29 5.4E-34 200.4 12.1 110 27-145 2-114 (125)
35 cd06859 PX_SNX1_2_like The pho 100.0 2.7E-29 5.8E-34 200.0 11.7 114 26-139 1-114 (114)
36 cd07628 BAR_Atg24p The Bin/Amp 100.0 1.3E-26 2.8E-31 199.1 27.4 183 186-395 2-184 (185)
37 cd06864 PX_SNX4 The phosphoino 100.0 5.7E-29 1.2E-33 200.2 12.1 114 26-139 1-129 (129)
38 cd07291 PX_SNX5 The phosphoino 100.0 5.8E-29 1.3E-33 194.8 10.3 111 25-139 2-141 (141)
39 cd07630 BAR_SNX_like The Bin/A 100.0 5.7E-26 1.2E-30 195.6 29.2 194 185-395 1-197 (198)
40 cd07292 PX_SNX6 The phosphoino 100.0 1.1E-28 2.4E-33 192.9 10.9 110 25-138 2-140 (141)
41 cd07622 BAR_SNX4 The Bin/Amphi 100.0 2.8E-25 6E-30 192.3 29.3 193 182-397 8-200 (201)
42 cd06868 PX_HS1BP3 The phosphoi 100.0 7.8E-28 1.7E-32 190.6 11.6 110 26-139 2-120 (120)
43 cd07301 PX_SNX21 The phosphoin 99.9 2.4E-27 5.2E-32 186.1 12.4 110 26-138 1-111 (112)
44 cd07288 PX_SNX15 The phosphoin 99.9 3.1E-27 6.8E-32 186.4 11.2 108 26-138 3-117 (118)
45 KOG2527 Sorting nexin SNX11 [I 99.9 9.1E-28 2E-32 183.7 7.1 117 22-140 14-131 (144)
46 cd06867 PX_SNX41_42 The phosph 99.9 5E-27 1.1E-31 185.5 11.0 103 28-139 2-112 (112)
47 cd06892 PX_SNX5_like The phosp 99.9 5.2E-27 1.1E-31 186.7 10.2 110 25-138 2-140 (141)
48 cd07280 PX_YPT35 The phosphoin 99.9 1.5E-26 3.2E-31 185.0 12.5 110 27-138 4-120 (120)
49 cd07287 PX_RPK118_like The pho 99.9 2.4E-26 5.1E-31 181.0 12.0 107 27-138 4-117 (118)
50 cd06866 PX_SNX8_Mvp1p_like The 99.9 2.8E-26 6.1E-31 178.1 11.6 96 33-138 9-104 (105)
51 cd07629 BAR_Atg20p The Bin/Amp 99.9 1.2E-23 2.5E-28 180.7 26.8 182 186-395 2-186 (187)
52 cd07300 PX_SNX20 The phosphoin 99.9 8.5E-26 1.9E-30 177.5 12.2 111 27-140 2-113 (114)
53 cd07279 PX_SNX20_21_like The p 99.9 8.9E-26 1.9E-30 178.4 12.2 111 26-139 1-112 (112)
54 cd06877 PX_SNX14 The phosphoin 99.9 2.4E-25 5.2E-30 176.6 13.0 111 27-139 4-119 (119)
55 cd06893 PX_SNX19 The phosphoin 99.9 1.7E-25 3.7E-30 180.0 10.4 109 28-138 6-131 (132)
56 cd06872 PX_SNX19_like_plant Th 99.9 3.2E-25 7E-30 172.4 11.4 106 26-138 1-106 (107)
57 cd06881 PX_SNX15_like The phos 99.9 3.6E-25 7.8E-30 175.7 11.9 108 26-138 3-116 (117)
58 cd06873 PX_SNX13 The phosphoin 99.9 7.5E-25 1.6E-29 174.7 13.0 111 26-138 5-119 (120)
59 cd07598 BAR_FAM92 The Bin/Amph 99.9 5.6E-22 1.2E-26 172.4 29.9 202 187-400 3-205 (211)
60 cd06886 PX_SNX27 The phosphoin 99.9 1.3E-24 2.9E-29 168.8 11.5 103 25-138 3-105 (106)
61 cd07276 PX_SNX16 The phosphoin 99.9 6E-24 1.3E-28 167.2 11.6 107 26-139 4-110 (110)
62 cd06897 PX_SNARE The phosphoin 99.9 1.5E-23 3.2E-28 165.2 11.6 106 26-139 1-108 (108)
63 cd06870 PX_CISK The phosphoino 99.9 1.7E-23 3.8E-28 164.3 11.5 105 28-139 5-109 (109)
64 cd06882 PX_p40phox The phospho 99.9 3E-23 6.5E-28 165.4 11.3 110 25-142 3-121 (123)
65 cd06885 PX_SNX17_31 The phosph 99.9 3E-23 6.5E-28 160.8 10.0 100 28-138 2-102 (104)
66 cd07277 PX_RUN The phosphoinos 99.9 9.5E-23 2.1E-27 160.7 11.3 107 26-140 1-107 (118)
67 cd06878 PX_SNX25 The phosphoin 99.9 1.6E-22 3.4E-27 162.4 12.8 113 25-139 8-127 (127)
68 cd06876 PX_MDM1p The phosphoin 99.9 1.5E-22 3.2E-27 164.8 12.5 109 27-137 21-132 (133)
69 cd06879 PX_UP1_plant The phosp 99.9 7.8E-23 1.7E-27 162.5 10.4 95 42-138 43-137 (138)
70 cd07597 BAR_SNX8 The Bin/Amphi 99.9 2.1E-20 4.5E-25 168.2 27.4 211 186-397 20-246 (246)
71 cd06875 PX_IRAS The phosphoino 99.9 2.4E-22 5.2E-27 158.8 12.5 106 24-141 2-107 (116)
72 cd06880 PX_SNX22 The phosphoin 99.9 1.5E-21 3.2E-26 153.1 11.8 103 26-141 1-104 (110)
73 cd06871 PX_MONaKA The phosphoi 99.9 1.8E-21 3.8E-26 154.9 11.0 106 26-142 8-113 (120)
74 cd06869 PX_UP2_fungi The phosp 99.9 3.9E-21 8.5E-26 151.8 11.2 90 40-139 30-119 (119)
75 smart00312 PX PhoX homologous 99.8 9.9E-21 2.1E-25 148.8 10.4 102 31-137 2-105 (105)
76 cd06874 PX_KIF16B_SNX23 The ph 99.8 2.1E-20 4.6E-25 149.2 12.1 100 26-132 1-101 (127)
77 cd06093 PX_domain The Phox Hom 99.8 4.2E-20 9.1E-25 145.5 12.3 106 27-138 1-106 (106)
78 cd07626 BAR_SNX9_like The Bin/ 99.8 5.1E-18 1.1E-22 145.6 25.7 189 186-396 2-198 (199)
79 cd06883 PX_PI3K_C2 The phospho 99.8 4.5E-20 9.8E-25 144.3 11.0 106 28-138 2-108 (109)
80 PF00787 PX: PX domain; Inter 99.8 1.6E-19 3.4E-24 143.9 9.9 110 25-139 3-113 (113)
81 cd06884 PX_PI3K_C2_68D The pho 99.8 9.1E-19 2E-23 136.4 11.6 108 26-138 2-110 (111)
82 cd06895 PX_PLD The phosphoinos 99.8 1.9E-18 4.1E-23 140.1 11.6 106 25-138 3-139 (140)
83 cd06888 PX_FISH The phosphoino 99.8 7.7E-18 1.7E-22 132.6 11.6 105 27-138 3-118 (119)
84 cd06887 PX_p47phox The phospho 99.8 8.1E-18 1.8E-22 131.9 11.6 105 26-139 2-116 (118)
85 PF10456 BAR_3_WASP_bdg: WASP- 99.7 1.1E-15 2.3E-20 134.7 19.7 193 184-398 37-237 (237)
86 cd06890 PX_Bem1p The phosphoin 99.7 1.1E-16 2.3E-21 126.0 11.2 101 27-138 2-111 (112)
87 cd07290 PX_PI3K_C2_beta The ph 99.7 1.7E-16 3.6E-21 122.1 11.0 105 28-138 2-108 (109)
88 cd07289 PX_PI3K_C2_alpha The p 99.7 1.8E-16 3.8E-21 121.7 11.0 104 28-138 2-108 (109)
89 cd07668 BAR_SNX9 The Bin/Amphi 99.7 5.6E-15 1.2E-19 124.4 20.2 193 185-399 9-209 (210)
90 cd07669 BAR_SNX33 The Bin/Amph 99.7 1.4E-14 3E-19 122.0 19.6 190 185-396 9-206 (207)
91 cd07670 BAR_SNX18 The Bin/Amph 99.7 1.9E-14 4.2E-19 120.7 20.4 190 185-396 9-206 (207)
92 cd07296 PX_PLD1 The phosphoino 99.6 1.5E-15 3.3E-20 120.3 10.1 107 25-138 3-134 (135)
93 cd07590 BAR_Bin3 The Bin/Amphi 99.6 1.2E-12 2.6E-17 114.8 29.2 207 186-401 9-216 (225)
94 cd07588 BAR_Amphiphysin The Bi 99.6 5.6E-12 1.2E-16 109.7 28.5 201 186-401 10-210 (211)
95 cd07307 BAR The Bin/Amphiphysi 99.5 7.1E-12 1.5E-16 109.3 26.0 186 198-395 3-193 (194)
96 cd07611 BAR_Amphiphysin_I_II T 99.5 2.1E-11 4.7E-16 104.9 27.4 200 186-400 10-209 (211)
97 PF06730 FAM92: FAM92 protein; 99.5 3E-11 6.5E-16 103.5 26.8 202 187-400 10-212 (219)
98 PF03114 BAR: BAR domain; Int 99.5 3.7E-11 8.1E-16 107.8 28.4 196 187-398 25-229 (229)
99 cd07591 BAR_Rvs161p The Bin/Am 99.5 6E-11 1.3E-15 105.0 28.8 203 186-399 9-213 (224)
100 cd07612 BAR_Bin2 The Bin/Amphi 99.5 4E-11 8.7E-16 103.3 26.2 201 186-401 10-210 (211)
101 cd06889 PX_NoxO1 The phosphoin 99.5 1.2E-12 2.6E-17 102.3 11.6 102 27-138 7-120 (121)
102 cd07599 BAR_Rvs167p The Bin/Am 99.4 6.1E-10 1.3E-14 98.9 28.1 198 187-392 1-211 (216)
103 smart00721 BAR BAR domain. 99.4 1.9E-09 4E-14 97.7 28.3 201 187-398 26-238 (239)
104 cd07297 PX_PLD2 The phosphoino 99.3 2E-11 4.4E-16 94.5 9.2 109 25-138 3-129 (130)
105 cd07589 BAR_DNMBP The Bin/Amph 99.3 6.9E-09 1.5E-13 90.2 25.5 183 186-390 3-186 (195)
106 KOG3771 Amphiphysin [Intracell 99.2 8.9E-09 1.9E-13 97.1 24.0 199 185-398 27-225 (460)
107 cd06896 PX_PI3K_C2_gamma The p 99.2 1.2E-10 2.5E-15 86.0 8.8 85 45-137 14-99 (101)
108 KOG1259 Nischarin, modulator o 99.2 7E-11 1.5E-15 105.3 7.9 100 30-137 13-113 (490)
109 KOG3784 Sorting nexin protein 99.0 8.8E-10 1.9E-14 101.3 7.3 100 30-141 5-104 (407)
110 cd07595 BAR_RhoGAP_Rich-like T 98.9 3.6E-06 7.8E-11 75.5 25.3 202 186-401 13-228 (244)
111 cd07593 BAR_MUG137_fungi The B 98.8 9E-06 2E-10 71.2 26.1 191 187-399 6-210 (215)
112 cd07601 BAR_APPL The Bin/Amphi 98.8 2.6E-05 5.7E-10 68.1 28.1 193 197-402 11-212 (215)
113 cd07637 BAR_ACAP3 The Bin/Amph 98.8 3.5E-05 7.6E-10 66.9 28.1 192 191-396 5-199 (200)
114 cd07603 BAR_ACAPs The Bin/Amph 98.8 3.7E-05 8E-10 66.9 28.2 191 192-396 6-199 (200)
115 cd07604 BAR_ASAPs The Bin/Amph 98.8 4.2E-05 9.2E-10 67.1 28.3 199 193-399 7-214 (215)
116 cd07638 BAR_ACAP2 The Bin/Amph 98.7 6.2E-05 1.3E-09 65.0 27.4 192 191-396 5-199 (200)
117 cd07639 BAR_ACAP1 The Bin/Amph 98.7 4.1E-05 8.9E-10 66.0 26.1 191 192-396 6-199 (200)
118 cd07606 BAR_SFC_plant The Bin/ 98.7 7.9E-05 1.7E-09 64.7 27.7 189 193-395 6-201 (202)
119 cd07594 BAR_Endophilin_B The B 98.7 2.5E-05 5.4E-10 69.1 23.6 152 227-397 73-229 (229)
120 cd07618 BAR_Rich1 The Bin/Amph 98.7 3.3E-05 7.1E-10 68.8 24.3 148 241-402 77-231 (246)
121 cd07619 BAR_Rich2 The Bin/Amph 98.6 3.5E-05 7.6E-10 68.5 24.4 201 187-402 14-233 (248)
122 cd07602 BAR_RhoGAP_OPHN1-like 98.6 0.0002 4.2E-09 62.2 28.0 187 196-396 10-206 (207)
123 cd07614 BAR_Endophilin_A2 The 98.6 2.3E-05 4.9E-10 68.8 21.5 146 226-399 67-218 (223)
124 cd07660 BAR_Arfaptin The Bin/A 98.6 0.00026 5.6E-09 60.8 27.0 194 190-396 4-200 (201)
125 cd07592 BAR_Endophilin_A The B 98.6 0.00011 2.3E-09 65.0 25.2 146 227-399 68-218 (223)
126 cd07615 BAR_Endophilin_A3 The 98.5 4.4E-05 9.6E-10 66.9 21.9 148 220-399 68-218 (223)
127 cd07634 BAR_GAP10-like The Bin 98.5 0.00012 2.7E-09 63.2 24.1 194 188-395 9-205 (207)
128 cd07642 BAR_ASAP2 The Bin/Amph 98.5 0.00049 1.1E-08 59.4 28.2 196 195-399 16-214 (215)
129 cd00011 BAR_Arfaptin_like The 98.5 0.0005 1.1E-08 59.3 27.6 197 190-394 4-201 (203)
130 cd07600 BAR_Gvp36 The Bin/Amph 98.5 3.3E-05 7.2E-10 69.0 20.3 157 219-396 81-241 (242)
131 cd07636 BAR_GRAF The Bin/Amphi 98.5 0.00059 1.3E-08 59.1 27.2 178 204-395 18-205 (207)
132 cd07635 BAR_GRAF2 The Bin/Amph 98.5 0.0004 8.8E-09 60.1 26.1 179 204-395 18-205 (207)
133 PF06456 Arfaptin: Arfaptin-li 98.5 0.0005 1.1E-08 61.1 27.1 195 187-389 32-228 (229)
134 cd07616 BAR_Endophilin_B1 The 98.5 0.0002 4.4E-09 63.1 24.1 138 240-396 88-228 (229)
135 cd07613 BAR_Endophilin_A1 The 98.5 0.00027 5.9E-09 61.9 24.3 149 219-399 67-218 (223)
136 cd07617 BAR_Endophilin_B2 The 98.4 0.00047 1E-08 60.2 24.1 129 240-396 88-219 (220)
137 cd07620 BAR_SH3BP1 The Bin/Amp 98.4 0.00069 1.5E-08 60.1 24.9 148 241-400 77-240 (257)
138 cd07641 BAR_ASAP1 The Bin/Amph 98.3 0.0017 3.7E-08 55.8 28.1 200 192-399 13-214 (215)
139 KOG4773 NADPH oxidase [Energy 98.2 1.7E-06 3.6E-11 78.5 5.0 102 28-137 24-135 (386)
140 KOG2101 Intermediate filament- 98.2 5.6E-06 1.2E-10 79.6 8.5 94 37-133 129-232 (362)
141 cd07631 BAR_APPL1 The Bin/Amph 98.1 0.0052 1.1E-07 53.1 25.5 189 192-400 13-210 (215)
142 cd07633 BAR_OPHN1 The Bin/Amph 98.0 0.0073 1.6E-07 51.8 25.6 184 198-395 12-205 (207)
143 PF08397 IMD: IRSp53/MIM homol 98.0 0.01 2.3E-07 52.7 30.8 195 196-398 4-209 (219)
144 PF13805 Pil1: Eisosome compon 97.9 0.016 3.4E-07 52.2 25.4 157 202-380 57-215 (271)
145 cd07640 BAR_ASAP3 The Bin/Amph 97.9 0.012 2.6E-07 50.0 23.9 192 198-399 19-212 (213)
146 KOG0905 Phosphoinositide 3-kin 97.8 7E-05 1.5E-09 78.0 9.0 108 25-138 1375-1484(1639)
147 cd07298 PX_RICS The phosphoino 97.8 0.00027 6E-09 53.5 9.5 68 42-122 26-98 (115)
148 cd07632 BAR_APPL2 The Bin/Amph 97.8 0.02 4.3E-07 49.2 27.4 182 205-400 19-213 (215)
149 cd07659 BAR_PICK1 The Bin/Amph 97.7 0.023 5E-07 48.7 26.2 190 195-391 9-208 (215)
150 PF10455 BAR_2: Bin/amphiphysi 97.7 0.013 2.7E-07 53.7 20.6 139 240-398 147-288 (289)
151 cd07661 BAR_ICA69 The Bin/Amph 97.5 0.045 9.8E-07 46.5 26.8 188 193-395 7-202 (204)
152 cd07605 I-BAR_IMD Inverse (I)- 97.5 0.066 1.4E-06 47.4 28.9 191 201-398 19-220 (223)
153 KOG1118 Lysophosphatidic acid 97.5 0.042 9.1E-07 49.7 19.8 146 228-398 88-236 (366)
154 KOG1451 Oligophrenin-1 and rel 97.4 0.16 3.5E-06 50.1 24.8 175 209-402 41-229 (812)
155 cd07299 PX_TCGAP The phosphoin 97.4 0.0021 4.5E-08 48.4 8.9 71 41-122 23-96 (113)
156 cd07648 F-BAR_FCHO The F-BAR ( 97.3 0.12 2.7E-06 47.2 28.5 77 324-400 158-234 (261)
157 KOG3725 SH3 domain protein SH3 97.3 0.069 1.5E-06 46.9 18.9 167 221-401 94-266 (375)
158 cd07650 F-BAR_Syp1p_like The F 97.3 0.13 2.8E-06 46.0 27.2 65 336-400 145-209 (228)
159 cd07278 PX_RICS_like The phosp 97.2 0.0052 1.1E-07 46.5 9.2 89 24-123 5-98 (114)
160 cd07674 F-BAR_FCHO1 The F-BAR 97.1 0.19 4.2E-06 45.9 29.0 77 324-400 158-234 (261)
161 cd07651 F-BAR_PombeCdc15_like 97.1 0.18 3.9E-06 45.3 30.0 153 242-395 57-221 (236)
162 KOG3876 Arfaptin and related p 97.0 0.24 5.1E-06 43.9 24.8 204 184-398 121-325 (341)
163 cd07649 F-BAR_GAS7 The F-BAR ( 97.0 0.26 5.5E-06 44.2 25.6 144 238-381 53-219 (233)
164 cd07673 F-BAR_FCHO2 The F-BAR 96.9 0.31 6.8E-06 44.7 28.1 75 326-400 167-241 (269)
165 cd07658 F-BAR_NOSTRIN The F-BA 96.7 0.44 9.4E-06 43.0 29.1 167 220-387 37-234 (239)
166 KOG0521 Putative GTPase activa 96.5 0.62 1.4E-05 49.1 21.9 193 191-398 24-221 (785)
167 cd07655 F-BAR_PACSIN The F-BAR 96.3 0.81 1.8E-05 41.7 29.3 71 322-393 167-237 (258)
168 cd07653 F-BAR_CIP4-like The F- 96.2 0.99 2.1E-05 41.0 30.1 71 323-393 161-246 (251)
169 KOG3651 Protein kinase C, alph 95.8 1.5 3.2E-05 39.9 18.3 187 202-393 146-340 (429)
170 cd07680 F-BAR_PACSIN1 The F-BA 95.5 1.8 3.9E-05 39.3 28.6 150 241-391 60-235 (258)
171 cd07653 F-BAR_CIP4-like The F- 95.4 2 4.4E-05 38.9 27.9 67 330-396 161-231 (251)
172 cd07610 FCH_F-BAR The Extended 95.3 1.7 3.6E-05 37.5 26.4 129 242-386 54-182 (191)
173 KOG2856 Adaptor protein PACSIN 94.9 3.3 7.1E-05 38.8 25.9 66 321-390 175-243 (472)
174 cd07643 I-BAR_IMD_MIM Inverse 94.7 2.8 6E-05 36.8 24.9 31 353-388 182-212 (231)
175 cd07596 BAR_SNX The Bin/Amphip 94.4 3.2 6.9E-05 36.4 29.2 44 189-232 12-55 (218)
176 cd07672 F-BAR_PSTPIP2 The F-BA 93.9 4.6 9.9E-05 36.4 29.2 73 322-395 153-225 (240)
177 cd07681 F-BAR_PACSIN3 The F-BA 93.0 6.8 0.00015 35.6 29.5 152 242-394 61-238 (258)
178 cd07647 F-BAR_PSTPIP The F-BAR 92.8 7 0.00015 35.2 30.1 95 299-394 128-223 (239)
179 cd07657 F-BAR_Fes_Fer The F-BA 92.3 8.2 0.00018 34.7 25.0 84 297-380 132-218 (237)
180 cd07651 F-BAR_PombeCdc15_like 92.1 8.7 0.00019 34.5 24.9 55 325-379 166-220 (236)
181 KOG3891 Secretory vesicle-asso 91.9 11 0.00023 35.2 24.8 197 186-397 48-252 (436)
182 cd07307 BAR The Bin/Amphiphysi 91.2 8.3 0.00018 32.6 24.6 45 191-235 3-47 (194)
183 cd07645 I-BAR_IMD_BAIAP2L1 Inv 91.2 9.7 0.00021 33.3 28.4 117 199-318 17-139 (226)
184 PF11559 ADIP: Afadin- and alp 90.5 8.9 0.00019 31.7 15.9 36 282-317 36-71 (151)
185 cd07657 F-BAR_Fes_Fer The F-BA 90.0 14 0.0003 33.2 26.9 69 331-399 162-230 (237)
186 PF08397 IMD: IRSp53/MIM homol 89.8 14 0.0003 32.8 26.6 52 188-239 10-67 (219)
187 PF09325 Vps5: Vps5 C terminal 89.7 14 0.00031 32.9 28.1 45 187-231 30-74 (236)
188 cd07685 F-BAR_Fes The F-BAR (F 89.2 16 0.00034 32.5 26.1 87 296-384 136-222 (237)
189 cd07676 F-BAR_FBP17 The F-BAR 89.0 17 0.00038 32.9 30.4 95 299-393 136-248 (253)
190 cd07646 I-BAR_IMD_IRSp53 Inver 88.9 16 0.00034 32.3 27.9 110 203-318 23-141 (232)
191 KOG2398 Predicted proline-seri 88.4 33 0.00072 35.4 23.6 77 324-400 147-223 (611)
192 cd07679 F-BAR_PACSIN2 The F-BA 88.2 20 0.00042 32.5 28.8 153 241-394 60-238 (258)
193 PF03114 BAR: BAR domain; Int 87.2 20 0.00043 31.4 22.3 45 188-232 33-84 (229)
194 cd07671 F-BAR_PSTPIP1 The F-BA 86.7 24 0.00052 31.8 29.8 73 321-394 151-223 (242)
195 cd07607 BAR_SH3P_plant The Bin 85.6 21 0.00046 30.3 23.2 145 240-393 56-206 (209)
196 COG5185 HEC1 Protein involved 85.3 39 0.00085 33.1 19.5 51 325-376 553-603 (622)
197 cd07644 I-BAR_IMD_BAIAP2L2 Inv 83.9 28 0.0006 30.2 26.1 113 200-318 18-139 (215)
198 PF10168 Nup88: Nuclear pore c 83.7 63 0.0014 34.2 16.5 19 279-297 552-570 (717)
199 cd07675 F-BAR_FNBP1L The F-BAR 83.1 36 0.00077 30.9 26.4 96 293-388 129-242 (252)
200 cd07686 F-BAR_Fer The F-BAR (F 83.0 34 0.00075 30.6 28.7 87 296-383 132-218 (234)
201 PRK04863 mukB cell division pr 82.5 1E+02 0.0022 35.7 26.0 47 185-231 834-880 (1486)
202 TIGR03545 conserved hypothetic 81.0 32 0.00069 35.1 12.8 51 325-375 221-271 (555)
203 cd07647 F-BAR_PSTPIP The F-BAR 80.4 43 0.00094 30.0 23.9 57 325-381 169-225 (239)
204 PF04048 Sec8_exocyst: Sec8 ex 78.3 36 0.00077 27.8 14.2 75 243-317 38-112 (142)
205 cd07627 BAR_Vps5p The Bin/Amph 77.7 49 0.0011 29.1 29.7 42 189-230 12-53 (216)
206 cd07652 F-BAR_Rgd1 The F-BAR ( 76.9 55 0.0012 29.3 28.3 25 353-377 203-227 (234)
207 KOG0994 Extracellular matrix g 76.7 1.3E+02 0.0028 33.4 24.3 17 193-209 1459-1475(1758)
208 cd07676 F-BAR_FBP17 The F-BAR 76.5 60 0.0013 29.5 26.1 62 329-390 162-230 (253)
209 PF04108 APG17: Autophagy prot 76.0 83 0.0018 30.9 26.5 46 355-401 335-380 (412)
210 PF04782 DUF632: Protein of un 75.8 71 0.0015 30.0 12.5 53 319-378 125-177 (312)
211 cd07598 BAR_FAM92 The Bin/Amph 75.6 56 0.0012 28.7 26.9 45 187-231 10-54 (211)
212 cd07675 F-BAR_FNBP1L The F-BAR 75.1 65 0.0014 29.2 29.9 35 329-363 161-195 (252)
213 PLN02866 phospholipase D 75.0 8.6 0.00019 41.6 6.9 111 27-143 17-175 (1068)
214 PF05667 DUF812: Protein of un 73.6 1.2E+02 0.0025 31.4 26.7 23 327-349 502-524 (594)
215 KOG4460 Nuclear pore complex, 73.5 1.1E+02 0.0023 30.9 14.5 10 85-94 323-332 (741)
216 PRK11546 zraP zinc resistance 73.4 27 0.00058 28.5 8.0 47 299-345 62-111 (143)
217 PLN02939 transferase, transfer 72.3 1.6E+02 0.0034 32.3 23.5 98 296-401 322-427 (977)
218 PRK11637 AmiB activator; Provi 72.2 1E+02 0.0023 30.3 28.8 22 293-314 168-189 (428)
219 PF15397 DUF4618: Domain of un 72.1 77 0.0017 28.8 25.9 74 299-375 89-169 (258)
220 PF12777 MT: Microtubule-bindi 72.0 33 0.00072 32.7 9.7 44 332-376 265-311 (344)
221 cd07655 F-BAR_PACSIN The F-BAR 71.8 79 0.0017 28.7 26.3 54 325-378 184-237 (258)
222 cd07621 BAR_SNX5_6 The Bin/Amp 71.7 72 0.0016 28.2 21.9 117 189-307 32-160 (219)
223 KOG0933 Structural maintenance 71.2 1.6E+02 0.0035 32.0 28.4 54 186-239 682-735 (1174)
224 PF04048 Sec8_exocyst: Sec8 ex 70.9 56 0.0012 26.7 11.2 23 217-239 63-85 (142)
225 cd07630 BAR_SNX_like The Bin/A 70.5 72 0.0016 27.8 22.9 103 189-296 12-133 (198)
226 KOG3691 Exocyst complex subuni 69.2 1.7E+02 0.0036 31.4 19.6 41 200-240 55-96 (982)
227 cd07602 BAR_RhoGAP_OPHN1-like 68.4 82 0.0018 27.6 21.9 44 195-238 2-45 (207)
228 PRK11020 hypothetical protein; 68.3 28 0.00061 26.9 6.5 48 298-345 5-53 (118)
229 PRK04778 septation ring format 66.9 1.6E+02 0.0035 30.3 29.9 51 187-237 190-244 (569)
230 COG1579 Zn-ribbon protein, pos 66.4 99 0.0021 27.8 21.8 65 294-362 92-156 (239)
231 cd07603 BAR_ACAPs The Bin/Amph 66.1 91 0.002 27.2 21.1 41 195-235 2-42 (200)
232 smart00030 CLb CLUSTERIN Beta 65.4 90 0.002 26.9 11.2 47 353-399 48-97 (206)
233 cd07672 F-BAR_PSTPIP2 The F-BA 64.6 1.1E+02 0.0023 27.6 22.2 52 327-378 172-223 (240)
234 cd07623 BAR_SNX1_2 The Bin/Amp 64.2 1E+02 0.0023 27.3 29.6 43 188-230 19-61 (224)
235 cd07663 BAR_SNX5 The Bin/Amphi 61.9 1.1E+02 0.0025 27.0 22.8 28 267-294 120-147 (218)
236 KOG4674 Uncharacterized conser 61.3 3.3E+02 0.0072 32.1 25.2 36 324-359 966-1001(1822)
237 PF02403 Seryl_tRNA_N: Seryl-t 61.3 72 0.0016 24.4 11.6 70 283-353 28-97 (108)
238 PF04108 APG17: Autophagy prot 61.2 1.7E+02 0.0037 28.7 19.5 20 102-121 120-139 (412)
239 cd07662 BAR_SNX6 The Bin/Amphi 61.0 1.2E+02 0.0026 26.8 20.0 117 189-307 31-159 (218)
240 cd07680 F-BAR_PACSIN1 The F-BA 60.0 1.4E+02 0.003 27.3 22.9 53 325-377 184-236 (258)
241 PRK14160 heat shock protein Gr 59.7 1.2E+02 0.0027 26.6 11.4 46 324-369 69-114 (211)
242 PF04012 PspA_IM30: PspA/IM30 59.5 1.2E+02 0.0027 26.6 20.8 50 187-237 23-72 (221)
243 PF06160 EzrA: Septation ring 59.2 2.2E+02 0.0047 29.3 27.4 17 110-126 27-43 (560)
244 PF12128 DUF3584: Protein of u 58.0 3.3E+02 0.0072 31.0 29.6 12 40-51 66-77 (1201)
245 cd07671 F-BAR_PSTPIP1 The F-BA 57.3 1.5E+02 0.0032 26.7 23.4 54 325-378 169-222 (242)
246 cd07609 BAR_SIP3_fungi The Bin 57.1 1.4E+02 0.003 26.4 22.5 44 245-288 63-107 (214)
247 KOG2273 Membrane coat complex 57.0 2.2E+02 0.0048 28.7 26.6 191 195-396 274-482 (503)
248 PRK14155 heat shock protein Gr 56.8 80 0.0017 27.7 8.3 49 324-372 21-69 (208)
249 PRK14161 heat shock protein Gr 56.6 1.1E+02 0.0023 26.2 8.8 50 323-372 26-75 (178)
250 cd07656 F-BAR_srGAP The F-BAR 56.4 1.5E+02 0.0033 26.6 23.5 37 326-362 186-222 (241)
251 cd07638 BAR_ACAP2 The Bin/Amph 55.1 1.4E+02 0.0031 26.0 21.8 44 195-238 2-45 (200)
252 COG4942 Membrane-bound metallo 54.3 2.2E+02 0.0048 27.9 22.9 48 189-236 60-107 (420)
253 cd07635 BAR_GRAF2 The Bin/Amph 53.9 1.5E+02 0.0033 25.9 21.0 44 195-238 2-45 (207)
254 PRK11637 AmiB activator; Provi 53.8 2.3E+02 0.005 27.9 24.9 27 324-350 220-246 (428)
255 PRK14141 heat shock protein Gr 53.5 1E+02 0.0022 27.1 8.3 51 323-373 38-88 (209)
256 cd07639 BAR_ACAP1 The Bin/Amph 53.5 1.5E+02 0.0033 25.8 20.5 43 195-237 2-44 (200)
257 KOG0994 Extracellular matrix g 53.1 3.7E+02 0.008 30.1 27.2 14 130-143 1478-1491(1758)
258 PRK14154 heat shock protein Gr 52.5 1.1E+02 0.0025 26.7 8.5 44 324-367 60-103 (208)
259 PF15642 Tox-ODYAM1: Toxin in 52.4 1.8E+02 0.004 26.4 23.4 28 342-369 175-202 (385)
260 PRK14140 heat shock protein Gr 51.8 1.3E+02 0.0029 25.9 8.7 45 324-368 45-89 (191)
261 cd07664 BAR_SNX2 The Bin/Amphi 51.5 1.8E+02 0.0039 26.0 28.4 44 187-230 28-71 (234)
262 cd07654 F-BAR_FCHSD The F-BAR 51.2 2E+02 0.0043 26.4 26.7 40 356-395 222-261 (264)
263 KOG4796 RNA polymerase II elon 50.9 85 0.0018 31.4 8.1 51 344-394 547-597 (604)
264 PF10168 Nup88: Nuclear pore c 50.6 3.4E+02 0.0073 28.9 21.8 17 187-203 535-551 (717)
265 KOG2264 Exostosin EXT1L [Signa 50.5 1.2E+02 0.0025 30.7 9.0 8 280-287 85-92 (907)
266 PF05266 DUF724: Protein of un 50.1 1.7E+02 0.0037 25.3 13.4 18 222-239 49-66 (190)
267 PRK14151 heat shock protein Gr 50.0 1.3E+02 0.0028 25.7 8.3 45 324-368 28-72 (176)
268 KOG3771 Amphiphysin [Intracell 49.8 2.7E+02 0.0058 27.5 22.0 44 187-230 36-79 (460)
269 PRK14149 heat shock protein Gr 49.7 1.4E+02 0.003 25.8 8.5 52 322-373 42-93 (191)
270 cd07661 BAR_ICA69 The Bin/Amph 48.9 1.8E+02 0.0039 25.2 24.0 42 191-232 12-53 (204)
271 PF07139 DUF1387: Protein of u 48.9 2.3E+02 0.0049 26.4 12.5 48 205-259 149-196 (302)
272 PRK14147 heat shock protein Gr 48.7 1.3E+02 0.0029 25.5 8.2 46 324-369 26-71 (172)
273 PRK14139 heat shock protein Gr 48.7 1.4E+02 0.0031 25.6 8.4 45 324-368 40-84 (185)
274 PF06476 DUF1090: Protein of u 48.3 1.3E+02 0.0029 23.6 9.9 44 298-341 70-114 (115)
275 cd07648 F-BAR_FCHO The F-BAR ( 48.2 2.1E+02 0.0046 25.9 27.2 64 330-394 150-213 (261)
276 cd07637 BAR_ACAP3 The Bin/Amph 48.2 1.9E+02 0.0041 25.2 22.6 42 195-236 2-43 (200)
277 KOG0971 Microtubule-associated 47.9 4E+02 0.0086 28.9 25.7 39 322-361 461-503 (1243)
278 PRK05431 seryl-tRNA synthetase 47.8 2.7E+02 0.0059 27.5 11.4 67 287-354 31-97 (425)
279 PRK14157 heat shock protein Gr 47.7 1.3E+02 0.0028 26.8 8.2 45 324-368 85-129 (227)
280 PF05377 FlaC_arch: Flagella a 47.0 72 0.0016 21.4 4.9 19 335-353 19-37 (55)
281 PF05278 PEARLI-4: Arabidopsis 46.3 2.3E+02 0.0051 25.8 18.0 13 82-94 9-21 (269)
282 cd07624 BAR_SNX7_30 The Bin/Am 46.3 2E+02 0.0043 25.0 25.9 47 187-233 20-66 (200)
283 PRK10869 recombination and rep 46.2 3.5E+02 0.0075 27.8 21.7 182 182-368 202-386 (553)
284 TIGR00414 serS seryl-tRNA synt 45.9 3.1E+02 0.0066 27.0 11.6 25 326-350 72-96 (418)
285 PRK14158 heat shock protein Gr 45.8 1.7E+02 0.0037 25.4 8.5 37 328-364 52-88 (194)
286 cd07681 F-BAR_PACSIN3 The F-BA 44.7 2.5E+02 0.0053 25.6 24.3 54 324-377 183-236 (258)
287 PF11932 DUF3450: Protein of u 44.4 2.4E+02 0.0052 25.4 15.6 18 377-394 142-159 (251)
288 PF08317 Spc7: Spc7 kinetochor 44.3 2.8E+02 0.0061 26.2 21.8 39 323-361 244-282 (325)
289 cd07605 I-BAR_IMD Inverse (I)- 44.2 2.3E+02 0.005 25.2 28.4 193 187-393 19-222 (223)
290 PF03962 Mnd1: Mnd1 family; I 44.1 2.1E+02 0.0045 24.6 14.0 57 291-347 103-159 (188)
291 PRK14163 heat shock protein Gr 43.8 2.3E+02 0.005 25.0 11.6 51 324-374 48-98 (214)
292 PRK14153 heat shock protein Gr 43.8 1.9E+02 0.0041 25.1 8.5 46 323-368 40-85 (194)
293 PLN02678 seryl-tRNA synthetase 43.8 3.2E+02 0.0069 27.2 11.1 68 286-354 35-102 (448)
294 PF12128 DUF3584: Protein of u 43.6 5.5E+02 0.012 29.3 30.0 27 319-345 767-793 (1201)
295 PRK14144 heat shock protein Gr 43.5 1.8E+02 0.004 25.3 8.3 48 324-371 53-100 (199)
296 PF08537 NBP1: Fungal Nap bind 43.5 2.8E+02 0.0062 26.0 12.2 47 321-372 173-219 (323)
297 KOG3691 Exocyst complex subuni 43.3 4.6E+02 0.0099 28.3 14.8 70 217-298 51-120 (982)
298 PRK14148 heat shock protein Gr 43.1 1.9E+02 0.0041 25.1 8.4 43 324-366 48-90 (195)
299 PRK04778 septation ring format 43.1 3.9E+02 0.0085 27.5 28.9 117 189-305 106-237 (569)
300 PRK14143 heat shock protein Gr 43.0 1.8E+02 0.004 26.1 8.6 27 335-361 86-112 (238)
301 KOG2391 Vacuolar sorting prote 42.9 3E+02 0.0064 26.1 10.8 22 275-296 222-243 (365)
302 cd07625 BAR_Vps17p The Bin/Amp 42.7 2.5E+02 0.0054 25.1 29.0 30 200-229 37-66 (230)
303 COG0576 GrpE Molecular chapero 42.4 2.2E+02 0.0048 24.6 8.8 46 323-368 43-88 (193)
304 cd07658 F-BAR_NOSTRIN The F-BA 42.2 2.6E+02 0.0056 25.1 24.7 52 325-376 187-238 (239)
305 PF08317 Spc7: Spc7 kinetochor 41.7 3.1E+02 0.0067 25.9 21.8 10 219-228 159-168 (325)
306 PRK05683 flgK flagellar hook-a 41.4 4.5E+02 0.0098 27.8 14.2 22 218-239 102-123 (676)
307 PRK14156 heat shock protein Gr 41.3 2.2E+02 0.0047 24.3 8.3 45 323-367 34-78 (177)
308 PF05667 DUF812: Protein of un 41.2 4.3E+02 0.0093 27.4 23.9 25 193-217 326-350 (594)
309 PHA02562 46 endonuclease subun 41.0 4.1E+02 0.0088 27.1 27.3 15 130-144 139-153 (562)
310 KOG0977 Nuclear envelope prote 40.8 4.1E+02 0.0089 27.1 25.2 14 268-281 114-127 (546)
311 PRK14164 heat shock protein Gr 40.5 2.3E+02 0.005 25.0 8.7 50 323-372 77-126 (218)
312 TIGR02894 DNA_bind_RsfA transc 40.0 2.2E+02 0.0048 23.8 9.5 29 323-351 118-146 (161)
313 KOG0979 Structural maintenance 39.7 5.5E+02 0.012 28.2 22.1 31 323-353 276-306 (1072)
314 PF07106 TBPIP: Tat binding pr 39.7 2.3E+02 0.0049 23.8 9.6 45 300-344 88-137 (169)
315 PF10498 IFT57: Intra-flagella 39.6 3.5E+02 0.0077 26.0 16.2 17 66-82 40-56 (359)
316 COG1196 Smc Chromosome segrega 39.5 6.2E+02 0.013 28.8 27.5 16 114-129 606-621 (1163)
317 cd00011 BAR_Arfaptin_like The 39.4 2.6E+02 0.0057 24.4 23.6 48 188-235 9-56 (203)
318 PF05600 DUF773: Protein of un 39.2 4.3E+02 0.0093 26.8 14.7 39 323-361 460-498 (507)
319 PF14942 Muted: Organelle biog 39.0 2.2E+02 0.0048 23.4 15.6 11 191-201 21-31 (145)
320 KOG2264 Exostosin EXT1L [Signa 38.8 3.8E+02 0.0083 27.3 10.5 8 326-333 117-124 (907)
321 PF06456 Arfaptin: Arfaptin-li 38.7 2.9E+02 0.0062 24.7 23.8 43 188-230 40-82 (229)
322 smart00503 SynN Syntaxin N-ter 38.4 1.8E+02 0.0039 22.3 14.7 22 365-386 95-116 (117)
323 PRK12715 flgK flagellar hook-a 38.3 5E+02 0.011 27.3 13.8 21 219-239 103-123 (649)
324 cd07669 BAR_SNX33 The Bin/Amph 38.1 2.8E+02 0.006 24.3 20.8 29 372-400 175-203 (207)
325 KOG4571 Activating transcripti 38.0 1.8E+02 0.0039 26.8 7.7 22 289-310 239-260 (294)
326 PRK10884 SH3 domain-containing 37.7 2.8E+02 0.0061 24.3 10.6 21 329-349 145-165 (206)
327 PF05377 FlaC_arch: Flagella a 37.6 1.3E+02 0.0027 20.2 5.9 24 325-348 2-25 (55)
328 TIGR01837 PHA_granule_1 poly(h 37.4 2E+02 0.0044 22.6 13.0 30 314-343 87-116 (118)
329 cd07665 BAR_SNX1 The Bin/Amphi 37.4 3.1E+02 0.0066 24.6 28.2 100 187-291 28-144 (234)
330 PF01093 Clusterin: Clusterin; 37.2 4.2E+02 0.0092 26.2 11.6 22 377-398 69-90 (436)
331 PF11471 Sugarporin_N: Maltopo 37.1 61 0.0013 22.2 3.6 26 322-347 31-56 (60)
332 PRK14159 heat shock protein Gr 36.7 2.7E+02 0.0058 23.7 9.0 49 321-369 28-76 (176)
333 PRK10698 phage shock protein P 36.3 3.1E+02 0.0067 24.3 21.4 47 191-237 27-73 (222)
334 PF04728 LPP: Lipoprotein leuc 36.1 1.4E+02 0.0029 20.2 7.4 27 324-350 18-44 (56)
335 PRK14145 heat shock protein Gr 35.9 2.9E+02 0.0064 24.0 8.7 43 326-368 55-97 (196)
336 PRK14146 heat shock protein Gr 35.8 2.8E+02 0.006 24.5 8.4 44 325-368 63-106 (215)
337 KOG0250 DNA repair protein RAD 35.5 6.6E+02 0.014 27.9 27.6 38 105-142 156-197 (1074)
338 PRK14143 heat shock protein Gr 35.3 3.3E+02 0.0072 24.4 10.1 23 324-346 68-90 (238)
339 PRK00409 recombination and DNA 35.3 6E+02 0.013 27.4 13.9 39 337-375 555-593 (782)
340 PRK08871 flgK flagellar hook-a 34.6 5.6E+02 0.012 26.8 14.5 22 218-239 105-126 (626)
341 cd07660 BAR_Arfaptin The Bin/A 34.5 3.1E+02 0.0068 23.9 23.1 43 189-231 10-52 (201)
342 PF14257 DUF4349: Domain of un 34.3 2E+02 0.0043 26.1 7.8 28 325-352 164-191 (262)
343 PF01025 GrpE: GrpE; InterPro 34.2 2.7E+02 0.0058 23.0 10.9 54 322-375 17-70 (165)
344 PRK10361 DNA recombination pro 34.2 4.9E+02 0.011 26.1 18.0 39 330-368 99-138 (475)
345 cd07633 BAR_OPHN1 The Bin/Amph 34.0 3.2E+02 0.007 23.9 23.3 45 195-239 2-46 (207)
346 PRK14158 heat shock protein Gr 33.3 3.2E+02 0.007 23.7 10.0 42 323-368 40-81 (194)
347 PF07295 DUF1451: Protein of u 33.0 2.4E+02 0.0052 23.2 7.1 35 337-371 18-52 (146)
348 TIGR01069 mutS2 MutS2 family p 32.7 6.6E+02 0.014 27.1 14.0 33 343-375 556-588 (771)
349 cd07626 BAR_SNX9_like The Bin/ 32.5 3.4E+02 0.0073 23.6 21.5 28 372-399 167-194 (199)
350 PRK14148 heat shock protein Gr 32.4 3.4E+02 0.0073 23.6 11.2 41 324-368 41-81 (195)
351 PF10267 Tmemb_cc2: Predicted 32.3 4.9E+02 0.011 25.4 13.7 15 106-120 64-78 (395)
352 PF05529 Bap31: B-cell recepto 32.1 3.3E+02 0.0071 23.3 9.8 29 324-352 155-183 (192)
353 PF10234 Cluap1: Clusterin-ass 32.1 4E+02 0.0087 24.4 18.8 22 216-237 120-141 (267)
354 COG0497 RecN ATPase involved i 31.7 5.8E+02 0.013 26.1 21.4 36 224-259 243-280 (557)
355 PF00140 Sigma70_r1_2: Sigma-7 31.5 32 0.00069 20.8 1.4 21 112-132 3-23 (37)
356 KOG4848 Extracellular matrix-a 31.5 3.4E+02 0.0073 23.3 10.1 42 355-397 125-166 (225)
357 COG2178 Predicted RNA-binding 31.4 3.5E+02 0.0076 23.5 12.8 88 282-382 4-92 (204)
358 PF04977 DivIC: Septum formati 31.3 1.5E+02 0.0033 20.9 5.3 12 331-342 39-50 (80)
359 PF07445 priB_priC: Primosomal 30.7 3.3E+02 0.0072 23.0 13.2 27 272-298 107-133 (173)
360 TIGR02338 gimC_beta prefoldin, 30.4 2.5E+02 0.0055 21.6 11.6 49 202-252 10-58 (110)
361 cd07608 BAR_ArfGAP_fungi The B 30.4 3.6E+02 0.0078 23.3 18.9 83 192-279 5-89 (192)
362 PLN02320 seryl-tRNA synthetase 30.2 5.9E+02 0.013 25.8 11.0 26 326-351 133-158 (502)
363 PRK14155 heat shock protein Gr 30.0 3.8E+02 0.0083 23.5 9.3 23 326-348 16-38 (208)
364 PF04420 CHD5: CHD5-like prote 29.7 2.4E+02 0.0051 23.6 6.8 19 324-342 67-85 (161)
365 TIGR00606 rad50 rad50. This fa 29.5 9.3E+02 0.02 27.8 27.9 9 112-120 664-672 (1311)
366 KOG4674 Uncharacterized conser 29.1 1E+03 0.023 28.3 28.1 23 375-397 923-945 (1822)
367 PF07889 DUF1664: Protein of u 29.1 3E+02 0.0065 22.0 12.8 17 219-235 39-55 (126)
368 PF01025 GrpE: GrpE; InterPro 29.1 1.6E+02 0.0034 24.5 5.7 22 326-347 14-35 (165)
369 PHA02562 46 endonuclease subun 28.9 6.3E+02 0.014 25.7 23.7 11 108-118 151-161 (562)
370 cd07679 F-BAR_PACSIN2 The F-BA 28.8 4.5E+02 0.0098 23.9 22.0 53 326-378 185-237 (258)
371 PRK09866 hypothetical protein; 28.8 7.2E+02 0.016 26.3 16.3 54 265-318 412-466 (741)
372 PF15066 CAGE1: Cancer-associa 28.7 5.9E+02 0.013 25.3 21.4 42 277-318 425-466 (527)
373 KOG0933 Structural maintenance 28.2 8.5E+02 0.018 26.9 24.4 48 355-402 997-1044(1174)
374 cd07606 BAR_SFC_plant The Bin/ 28.1 4.1E+02 0.0088 23.2 22.4 40 196-235 2-41 (202)
375 PF09425 CCT_2: Divergent CCT 28.0 49 0.0011 18.6 1.6 11 109-119 4-14 (27)
376 PRK14139 heat shock protein Gr 27.8 3.9E+02 0.0086 22.9 9.9 23 324-346 33-55 (185)
377 COG1382 GimC Prefoldin, chaper 27.7 3.1E+02 0.0067 21.7 13.7 59 197-257 8-66 (119)
378 COG4942 Membrane-bound metallo 27.7 6E+02 0.013 25.0 22.2 45 189-233 53-97 (420)
379 COG2433 Uncharacterized conser 27.5 7E+02 0.015 25.8 14.4 30 61-92 82-112 (652)
380 PRK14147 heat shock protein Gr 27.5 3.8E+02 0.0083 22.7 9.5 25 324-348 19-43 (172)
381 PRK14162 heat shock protein Gr 27.5 4.1E+02 0.0089 23.0 10.0 39 325-363 48-86 (194)
382 PRK15374 pathogenicity island 27.5 6.7E+02 0.015 25.5 18.4 65 276-341 133-197 (593)
383 cd00179 SynN Syntaxin N-termin 27.3 3.3E+02 0.0072 21.9 16.2 30 365-394 94-123 (151)
384 PRK14142 heat shock protein Gr 27.2 4.3E+02 0.0093 23.5 8.0 49 325-373 42-90 (223)
385 smart00787 Spc7 Spc7 kinetocho 27.0 5.3E+02 0.012 24.2 21.5 38 323-360 239-276 (312)
386 PF01601 Corona_S2: Coronaviru 26.7 7.2E+02 0.016 25.6 11.3 13 348-360 358-370 (610)
387 PF05529 Bap31: B-cell recepto 26.3 4.1E+02 0.0089 22.7 9.4 28 322-349 160-187 (192)
388 cd07667 BAR_SNX30 The Bin/Amph 26.3 4.8E+02 0.01 23.5 26.6 50 187-236 71-120 (240)
389 PF10498 IFT57: Intra-flagella 26.2 6E+02 0.013 24.5 16.8 31 86-122 85-115 (359)
390 smart00721 BAR BAR domain. 25.8 4.5E+02 0.0098 23.0 24.7 23 199-221 31-53 (239)
391 PRK09750 hypothetical protein; 25.7 87 0.0019 21.1 2.7 37 45-84 3-39 (64)
392 COG0172 SerS Seryl-tRNA synthe 25.5 6.7E+02 0.014 24.8 10.2 28 325-352 70-97 (429)
393 PF07352 Phage_Mu_Gam: Bacteri 25.4 3.5E+02 0.0075 22.1 7.0 31 348-379 32-62 (149)
394 PF15619 Lebercilin: Ciliary p 24.9 4.6E+02 0.0099 22.7 21.7 37 324-360 126-162 (194)
395 PHA03161 hypothetical protein; 24.8 4E+02 0.0086 22.0 11.8 52 299-361 62-113 (150)
396 PF14643 DUF4455: Domain of un 24.6 7.2E+02 0.016 24.9 28.1 20 344-363 414-433 (473)
397 PRK15396 murein lipoprotein; P 24.4 2.8E+02 0.0061 20.1 6.5 28 325-352 41-68 (78)
398 PF14335 DUF4391: Domain of un 24.4 3.8E+02 0.0083 23.6 7.6 45 290-336 174-218 (221)
399 PF08181 DegQ: DegQ (SacQ) fam 24.3 1.8E+02 0.0039 17.9 4.5 29 324-352 5-33 (46)
400 COG4477 EzrA Negative regulato 24.2 7.6E+02 0.017 25.1 22.6 21 107-127 27-47 (570)
401 PF06810 Phage_GP20: Phage min 24.0 4.2E+02 0.0091 22.0 10.2 45 299-344 28-72 (155)
402 PF08898 DUF1843: Domain of un 24.0 2E+02 0.0043 19.1 4.1 37 281-317 14-50 (53)
403 PF06008 Laminin_I: Laminin Do 24.0 5.5E+02 0.012 23.3 23.9 13 325-337 194-206 (264)
404 PF06802 DUF1231: Protein of u 24.0 1.5E+02 0.0033 25.4 4.5 61 19-93 181-241 (340)
405 smart00787 Spc7 Spc7 kinetocho 23.8 6.1E+02 0.013 23.8 21.4 32 105-140 78-109 (312)
406 PF12443 AKNA: AT-hook-contain 23.5 1.1E+02 0.0024 23.5 3.3 33 323-355 45-77 (106)
407 PF04728 LPP: Lipoprotein leuc 23.5 2.4E+02 0.0052 19.0 6.7 28 324-351 4-31 (56)
408 PRK13428 F0F1 ATP synthase sub 23.3 7.4E+02 0.016 24.6 12.7 34 339-372 88-121 (445)
409 PF15290 Syntaphilin: Golgi-lo 23.2 5.9E+02 0.013 23.4 10.8 27 328-354 115-141 (305)
410 PF07200 Mod_r: Modifier of ru 23.2 4.1E+02 0.0089 21.6 12.5 22 366-387 124-145 (150)
411 PRK07352 F0F1 ATP synthase sub 23.1 4.5E+02 0.0098 22.0 13.8 35 339-373 106-140 (174)
412 PRK09039 hypothetical protein; 23.1 6.6E+02 0.014 23.9 23.7 7 356-362 191-197 (343)
413 PF05597 Phasin: Poly(hydroxya 23.0 4.1E+02 0.0088 21.4 13.5 48 296-343 81-129 (132)
414 PRK14163 heat shock protein Gr 23.0 5.3E+02 0.011 22.8 9.8 21 326-346 43-63 (214)
415 PF10241 KxDL: Uncharacterized 22.8 3.2E+02 0.0069 20.2 7.8 11 339-349 59-69 (88)
416 PF05266 DUF724: Protein of un 22.6 5E+02 0.011 22.4 14.5 17 223-239 66-82 (190)
417 PF08580 KAR9: Yeast cortical 22.5 9.4E+02 0.02 25.5 27.5 116 285-400 236-364 (683)
418 cd07673 F-BAR_FCHO2 The F-BAR 22.5 6E+02 0.013 23.2 25.4 148 241-395 63-221 (269)
419 PF15397 DUF4618: Domain of un 22.3 6E+02 0.013 23.1 21.2 60 323-383 81-140 (258)
420 PRK06945 flgK flagellar hook-a 22.1 9.4E+02 0.02 25.3 14.5 22 218-239 103-124 (651)
421 PRK14472 F0F1 ATP synthase sub 22.0 4.8E+02 0.01 21.9 13.3 38 339-376 105-142 (175)
422 CHL00019 atpF ATP synthase CF0 21.9 5E+02 0.011 22.0 12.7 22 284-305 47-69 (184)
423 PRK14162 heat shock protein Gr 21.8 5.3E+02 0.012 22.3 11.0 42 322-367 38-79 (194)
424 COG0216 PrfA Protein chain rel 21.8 7E+02 0.015 23.7 11.8 24 325-348 78-101 (363)
425 PF06705 SF-assemblin: SF-asse 21.7 5.9E+02 0.013 22.8 28.3 195 194-389 4-215 (247)
426 PF09006 Surfac_D-trimer: Lung 21.7 2.3E+02 0.005 18.2 5.1 25 326-350 2-26 (46)
427 cd07634 BAR_GAP10-like The Bin 21.6 5.6E+02 0.012 22.5 19.6 24 345-368 141-164 (207)
428 KOG1329 Phospholipase D1 [Lipi 21.6 1.6E+02 0.0035 31.6 5.1 94 42-142 65-167 (887)
429 PF10481 CENP-F_N: Cenp-F N-te 21.6 6.3E+02 0.014 23.1 13.8 26 367-392 91-116 (307)
430 COG2433 Uncharacterized conser 21.6 9.1E+02 0.02 25.0 17.0 18 218-235 344-361 (652)
431 cd07659 BAR_PICK1 The Bin/Amph 21.4 5.6E+02 0.012 22.5 22.9 43 188-230 9-51 (215)
432 PF14193 DUF4315: Domain of un 21.3 2.6E+02 0.0057 20.5 4.8 20 323-342 15-34 (83)
433 PRK12714 flgK flagellar hook-a 21.0 9.7E+02 0.021 25.0 14.5 21 219-239 103-123 (624)
434 PRK08147 flgK flagellar hook-a 20.9 9E+02 0.02 24.7 14.1 21 219-239 104-124 (547)
435 TIGR00634 recN DNA repair prot 20.7 9.2E+02 0.02 24.7 22.3 188 188-375 168-391 (563)
436 KOG4571 Activating transcripti 20.6 5.7E+02 0.012 23.6 7.7 12 302-313 238-249 (294)
437 PF10264 Stork_head: Winged he 20.5 1.1E+02 0.0023 22.4 2.5 19 70-88 31-49 (80)
438 PRK14154 heat shock protein Gr 20.4 5.9E+02 0.013 22.4 10.7 41 324-368 53-93 (208)
439 PRK14151 heat shock protein Gr 20.4 5.4E+02 0.012 21.9 9.6 21 326-346 23-43 (176)
440 cd07631 BAR_APPL1 The Bin/Amph 20.4 6E+02 0.013 22.4 18.6 32 369-400 157-188 (215)
441 PF11887 DUF3407: Protein of u 20.3 6.6E+02 0.014 22.9 13.0 70 191-261 45-114 (267)
No 1
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.1e-42 Score=340.88 Aligned_cols=366 Identities=35% Similarity=0.565 Sum_probs=311.2
Q ss_pred cEEEEEcCce-EeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccc---cC
Q 043025 25 YLSVSVTDPV-KLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEK---FR 100 (403)
Q Consensus 25 ~~~v~V~~~~-~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~---~~ 100 (403)
.+.|.++++. ..+++.+.|++|.|.+.++.|.|....+.|+|||+||.|||+.|...||+++|||+|+|...+. ..
T Consensus 109 ~~~i~~~~~~~~~~~~~~~~~~y~i~t~t~~~~~~~~~~~V~RrysDF~~L~~~L~~~~p~~~iPplP~k~~~~~~~~~~ 188 (503)
T KOG2273|consen 109 DLSITVSDPEPEIGDGMKTYVSYIIETKTSLPIFGSSEFSVRRRYSDFLWLRSKLLSKYPGRIIPPLPEKSIVGSKSGDS 188 (503)
T ss_pred heeeecCCCccccCCCccceEEEEEEEeeccCcCCCCceeEEeehhHHHHHHHHHHHHCCCCeeCCCCchhhhhccccCC
Confidence 4678888888 6667889999999999999999999999999999999999999999999999999999999873 25
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccChh--hHH--HhhhccCCCCCCCcchHHHHHHhhhhhhhhhh
Q 043025 101 FSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEE--TME--RLRSQDTGYFKKKPADLMQIFKDVQSKVSDVV 176 (403)
Q Consensus 101 ~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (403)
++++|++.||++|++||++|+.||.|++++.|+.||+.+.. .|. .......+.. .. +++......-.-.+
T Consensus 189 ~s~ef~e~rr~~L~~~l~r~~~hP~l~~~~~~~~FL~~~~~~~~~~~~~~~~~~~~~l--~~----~~~~~~~~~~~~~~ 262 (503)
T KOG2273|consen 189 FSDEFIEKRRKALERFLNRLSLHPVLSNDEDFRLFLESDSKELPTDVNSRFKSGADLL--SK----QFFGETSSTDAVSL 262 (503)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHhcccccccchhhHHHHhcchhhc--cc----cccCcccchhhhhc
Confidence 79999999999999999999999999999999999999942 121 1111111110 00 11111110000001
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-h-hHHHHHHHHHHHH
Q 043025 177 LGKEKPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEG-D-ALGKAFSELGMKS 254 (403)
Q Consensus 177 ~~~~~~~~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~-~-~L~~~~~~~~~~~ 254 (403)
.....+..+.+++|.+..++++.++.++..+.+.+.++++....++..+.++|.++..|+.++. . .+...+..++.+.
T Consensus 263 ~~~~~~~~~~~~~f~e~~~~i~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~l~~~~~~~~~~~ 342 (503)
T KOG2273|consen 263 LPSFKKFKESDKEFTEKKEKIDKLEQQLKKLSKQVQRLVKRRRELASNLAELGKALAQLSALEGETDELSEALSGLAKVI 342 (503)
T ss_pred cccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Confidence 1234456677999999999999999999999999999999999999999999999999999884 3 7899999999999
Q ss_pred HHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccc-----CcchHHHH
Q 043025 255 EALSVKLQRE-AHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLT-----RSDKVGEA 328 (403)
Q Consensus 255 ~~~~~~~~~~-~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~-----~~~ki~~l 328 (403)
..++....+. +......+.+.+++|++++++++.++..|..+++.++.++..+.++++.+.++... ..+|.+.+
T Consensus 343 ~~~~~~~e~~~~~~~~~~~~~~l~~~i~~~~~~k~~~~~r~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~k~~~~ 422 (503)
T KOG2273|consen 343 ESLSKLLEKLTAEKDSKKLAEQLREYIRYLESVKSLFEQRSKALQKLQEAQRELSSKKEQLSKLKKKNRSSFGFDKIDLA 422 (503)
T ss_pred HHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccchhHHH
Confidence 9999999999 99999999999999999999999999999999999999999999999998888733 35777777
Q ss_pred HHHHHHHHHHHHHHH-----HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 329 EIEYKELKAESEDST-----RRFE--TIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 329 ~~~i~~~~~~~~~~~-----~~~~--~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~ 396 (403)
+.++...+..++.+. ..++ .|++.++.|+.+|...+..+|+.++..|++.++++++++++.|+++.+.
T Consensus 423 ~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~f~~~~~~d~~~~~~~~~d~~i~~~~~~l~~W~~~~~~ 497 (503)
T KOG2273|consen 423 EKEIEKLEEKVNELEELLALKELELDEISERIRAELERFEESRRQDFKESLKKYADLHVEYAEQILKAWEKFLPS 497 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 888888777777776 6666 9999999999999999999999999999999999999999999999884
No 2
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=100.00 E-value=2e-34 Score=252.73 Aligned_cols=227 Identities=22% Similarity=0.342 Sum_probs=218.4
Q ss_pred hhhhhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHH
Q 043025 171 KVSDVVLGKEKPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE-GDALGKAFSE 249 (403)
Q Consensus 171 ~~~~~~~~~~~~~~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e-~~~L~~~~~~ 249 (403)
.+++++.+...++.|+|++|.+.+.|+..|+.+|+.|.+.+..+++++++|+..+.+||.++..|+.+| ++.|+.+++.
T Consensus 5 ~~~d~~~~~~~k~~E~D~wF~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~~~Ls~als~ 84 (234)
T cd07665 5 KATDAVSKMTIKMNESDVWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTALSRALSQ 84 (234)
T ss_pred HHHHHHhccccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 345666777888999999999999999999999999999999999999999999999999999999999 5689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc-ccCcchHHHH
Q 043025 250 LGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLM-LTRSDKVGEA 328 (403)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~-~~~~~ki~~l 328 (403)
+|+....++....+++......|.++|++|++.+.|||.+|..|.++++.|+.++..+.+++.+++|+. +++++|+..+
T Consensus 85 laev~~~i~~~~~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~a 164 (234)
T cd07665 85 LAEVEEKIEQLHQEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANKPDKLQQA 164 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999996 6688999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043025 329 EIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKL 397 (403)
Q Consensus 329 ~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~ 397 (403)
+.+|.+++.+++.++.+|+.|+..++.|+.||+.+|..||+.++..|++.+|...+++++.|+.++|..
T Consensus 165 ~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~er~~Dfk~~v~~fles~ie~qke~ie~We~flp~~ 233 (234)
T cd07665 165 KDEIAEWESRVTQYERDFERISATVRKEVIRFEKEKSKDFKNHIIKYLETLLHSQQQLVKYWEAFLPEA 233 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999875
No 3
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=100.00 E-value=3e-34 Score=253.02 Aligned_cols=227 Identities=25% Similarity=0.385 Sum_probs=217.1
Q ss_pred hhhhhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHH
Q 043025 171 KVSDVVLGKEKPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE-GDALGKAFSE 249 (403)
Q Consensus 171 ~~~~~~~~~~~~~~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e-~~~L~~~~~~ 249 (403)
.+++++.+...++.|+|++|.+.+.|+..|+.+|+.+.+.++.+++++++++.++.+||.++..|+.+| ++.|+.++..
T Consensus 5 ~~~~~~~~~~~k~~E~D~~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~E~~~~ls~~l~~ 84 (234)
T cd07664 5 KAADAVNKMTIKMNESDAWFEEKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQ 84 (234)
T ss_pred HHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchHHHHHHH
Confidence 344556667778899999999999999999999999999999999999999999999999999999987 5689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc-ccCcchHHHH
Q 043025 250 LGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLM-LTRSDKVGEA 328 (403)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~-~~~~~ki~~l 328 (403)
+|+....+.....+++..+...|.++|++|++.+.|+|.+|.+|.++++.|+.++..+.+++.+++|+. +++++|+..+
T Consensus 85 laev~~ki~~~~~~qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~~~k~dK~~~~ 164 (234)
T cd07664 85 LAEVEEKIDQLHQDQAFADFYLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQYANKPDKLQQA 164 (234)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999996 4678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043025 329 EIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKL 397 (403)
Q Consensus 329 ~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~ 397 (403)
+.+|.+++.+...++.+|+.|+..++.|+.+|+.+|..||+.++..|++.++.+.+++++.|+.|+|..
T Consensus 165 ~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~fles~ie~qke~ie~We~f~p~~ 233 (234)
T cd07664 165 KDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQQLIKYWEAFLPEA 233 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999875
No 4
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=100.00 E-value=1.8e-32 Score=243.21 Aligned_cols=217 Identities=24% Similarity=0.389 Sum_probs=210.0
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHH
Q 043025 181 KPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE-GDALGKAFSELGMKSEALSV 259 (403)
Q Consensus 181 ~~~~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e-~~~L~~~~~~~~~~~~~~~~ 259 (403)
.++.|+|++|.+.+.|+..|+.+|+.+.+.++.+++++++++.++.+||.++..|+.+| ++.|+.++..+|++...++.
T Consensus 5 ~k~~E~D~~F~~~k~~i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~~E~~~~Ls~al~~la~~~~ki~~ 84 (224)
T cd07623 5 IKMDETDQWFEEKQQQIENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLSNCEEHTSLSRALSQLAEVEEKIEQ 84 (224)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999 67899999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc-ccCcchHHHHHHHHHHHHHH
Q 043025 260 KLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLM-LTRSDKVGEAEIEYKELKAE 338 (403)
Q Consensus 260 ~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~-~~~~~ki~~l~~~i~~~~~~ 338 (403)
...+++..+...|.++|++|++.+.|++++|.+|.++++.|+.++..+.+++.+++|+. .++++|++.++.+|.+++.+
T Consensus 85 ~~~~qa~~d~~~l~e~L~eY~r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e~~ 164 (224)
T cd07623 85 LHGEQADTDFYILAELLKDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEWEAK 164 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999997 44689999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043025 339 SEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKL 397 (403)
Q Consensus 339 ~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~ 397 (403)
.+.++.+|+.|+..++.|+.+|+..|..||+.+|..|++.+|.+.+++++.|+.++|..
T Consensus 165 ~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~~~le~~i~~q~~~~~~We~~~pe~ 223 (224)
T cd07623 165 VDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIIIKYLESLLNTQQQLIKYWEAFLPEA 223 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999864
No 5
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=100.00 E-value=1.1e-31 Score=242.80 Aligned_cols=217 Identities=29% Similarity=0.493 Sum_probs=208.6
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHH
Q 043025 180 EKPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD-ALGKAFSELGMKSEALS 258 (403)
Q Consensus 180 ~~~~~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~-~L~~~~~~~~~~~~~~~ 258 (403)
...+.++|++|.+.++|+..|+.+|+.+.+...++++++++++.++.+||.+|..|+.+|.+ .|+.++..+|++++.++
T Consensus 16 ~~~~~e~D~~F~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E~~~~l~~~l~~l~~~~~~~~ 95 (236)
T PF09325_consen 16 SPKMKEPDEWFEEIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKSEEEKSLSEALSQLAEAFEKIS 95 (236)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999854 79999999999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccc---CcchHHHHHHHHHHH
Q 043025 259 VKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLT---RSDKVGEAEIEYKEL 335 (403)
Q Consensus 259 ~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~---~~~ki~~l~~~i~~~ 335 (403)
.....++..+...|.++|++|++++.|+|++|.+|+.++.+|+.+...+.+++..++++.+. +++|++.++.+|.++
T Consensus 96 ~~~~~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~ 175 (236)
T PF09325_consen 96 ELLEEQANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEA 175 (236)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999854 568999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 336 KAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 336 ~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~ 396 (403)
+..++.++.+|+.|+..++.|+.+|+..|..||+.+|.+|++.+|.+++++++.|+.++|+
T Consensus 176 ~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~~~~We~~~~~ 236 (236)
T PF09325_consen 176 ERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAESQIEYQKKMLEAWETFLPE 236 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 9999999999999999999999999999999999999999999999999999999999874
No 6
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=100.00 E-value=2.2e-31 Score=235.39 Aligned_cols=211 Identities=19% Similarity=0.357 Sum_probs=204.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHH
Q 043025 185 ESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE-GDALGKAFSELGMKSEALSVKLQR 263 (403)
Q Consensus 185 e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e-~~~L~~~~~~~~~~~~~~~~~~~~ 263 (403)
|+|++|.+.+.|+..|+.+|+.+.+.++.+++++++++.++.+||.++..|+.+| ++.|+.++..+|++...++.....
T Consensus 1 e~D~~F~~~k~~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~ 80 (216)
T cd07627 1 EPDEWFIEKKQYLDSLESQLKQLYKSLELVSSQRKELASATEEFAETLEALSSLELSKSLSDLLAALAEVQKRIKESLER 80 (216)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999999999999999999999998 568999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccc---CcchHHHHHHHHHHHHHHHH
Q 043025 264 EAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLT---RSDKVGEAEIEYKELKAESE 340 (403)
Q Consensus 264 ~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~---~~~ki~~l~~~i~~~~~~~~ 340 (403)
++......|.++|++|++++.|+|++|.+|.++++.|+.+...+.+++.+++|+.+. +++|+..++.+|.+++.+++
T Consensus 81 ~a~~e~~~l~~~L~ey~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~ 160 (216)
T cd07627 81 QALQDVLTLGVTLDEYIRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRAS 160 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999853 47899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 341 DSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLP 395 (403)
Q Consensus 341 ~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~ 395 (403)
.++.+|+.|+..++.|+.+|+..|..+|+.+|..|++.+|.+++++++.|+.|+.
T Consensus 161 ~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~~e~~ie~~k~~ie~We~f~~ 215 (216)
T cd07627 161 ELKKEFEEVSELIKSELERFERERVEDFRNSVEIYLESAIESQKELIELWETFYQ 215 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999864
No 7
>cd07284 PX_SNX7 The phosphoinositide binding Phox Homology domain of Sorting Nexin 7. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX7 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, SNX30,
Probab=100.00 E-value=3.6e-33 Score=219.48 Aligned_cols=113 Identities=45% Similarity=0.778 Sum_probs=106.6
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccc--cCCCH
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEK--FRFSA 103 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~--~~~~~ 103 (403)
+.|.|+||+++++|+++|++|.|.++++.|.|+...+.|+||||||.|||..|...||++++||||+|..+.. .++++
T Consensus 1 ~~i~V~dP~~~~~~~~~y~~Y~V~t~t~~~~~~~~~~~V~RRysDF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~ 80 (116)
T cd07284 1 IFITVDEPESHVTAIETFITYRVMTKTSRSEFDSSEFEVRRRYQDFLWLKGRLEEAHPTLIIPPLPEKFVMKGMVERFNE 80 (116)
T ss_pred CEEEEeCcceeecCCcCeEEEEEEEeeCCCCcCCCceEEeCCchHHHHHHHHHHHHCCCceeCCCCCcchhhhccccCCH
Confidence 4799999999999999999999999999999999999999999999999999999999999999999987642 15789
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 104 EFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 104 ~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
+||++||++|+.||++|+.||.|+.|+.|+.||+.
T Consensus 81 ~fie~Rr~~Le~FL~ri~~hp~L~~s~~~~~FL~~ 115 (116)
T cd07284 81 DFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTA 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccccChHHHHhhcC
Confidence 99999999999999999999999999999999986
No 8
>cd07283 PX_SNX30 The phosphoinositide binding Phox Homology domain of Sorting Nexin 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX30 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-8, and SNX32
Probab=100.00 E-value=6.6e-33 Score=218.28 Aligned_cols=114 Identities=50% Similarity=0.759 Sum_probs=106.6
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccc--cCCCH
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEK--FRFSA 103 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~--~~~~~ 103 (403)
+.|+|+||.++++|+++|++|.|.++++.|+|....|.|+||||||.|||+.|...+|++++||||+|+.+.. .++++
T Consensus 1 ~~i~V~dP~~~~~~~~~y~~Y~I~t~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~p~~~iPpLP~K~~~~~~~~~~~~ 80 (116)
T cd07283 1 LFVTVDDPKKHVCTMETYITYRVTTKTTRTEFDLPEYSVRRRYQDFDWLRNKLEESQPTHLIPPLPEKFVVKGVVDRFSE 80 (116)
T ss_pred CEEEEcCcceecCCCcCeEEEEEEEecCCCCcccCceEEeCCccHHHHHHHHHHHhCCCcccCCCCCcccccccccCCCH
Confidence 4699999999999999999999999999999999999999999999999999999999999999999987531 25799
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 104 EFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 104 ~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
+||++||++|+.||++|+.||.|+.|+.|+.||+.+
T Consensus 81 ~fie~Rr~~Le~FL~~i~~hp~L~~s~~~~~FLt~~ 116 (116)
T cd07283 81 EFVETRRKALDKFLKRIADHPVLSFNEHFNVFLTAK 116 (116)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccccCcHHHHhhcCC
Confidence 999999999999999999999999999999999863
No 9
>cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficki
Probab=100.00 E-value=1.1e-32 Score=217.97 Aligned_cols=111 Identities=36% Similarity=0.707 Sum_probs=102.5
Q ss_pred EEEEEcCceEeC--CCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCH
Q 043025 26 LSVSVTDPVKLG--NGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSA 103 (403)
Q Consensus 26 ~~v~V~~~~~~~--~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~ 103 (403)
+.|+|+||++++ +|+++|++|.|.+.. ..+.|+||||||.|||..|...||+++|||||+|..++ ++++
T Consensus 1 ~~~~v~dp~k~~~~~G~~~Yv~Y~I~~~~-------~~~~V~RRYsDF~~L~~~L~~~~p~~~IPpLP~K~~~g--~f~~ 71 (127)
T cd07286 1 FQCTIDDPTKQTKFKGMKSYISYKLVPSH-------TGLQVHRRYKHFDWLYARLAEKFPVISVPHIPEKQATG--RFEE 71 (127)
T ss_pred CeEEeCCCcccCCCCCCcCEEEEEEEEec-------CceEEECCCcHHHHHHHHHHHHCCCcEeCCCcCCCcCC--CCCH
Confidence 468999999997 889999999998753 56999999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccCChhhhcccccC--hhh-HHH
Q 043025 104 EFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD--EET-MER 145 (403)
Q Consensus 104 ~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~--~~~-~~~ 145 (403)
+||++||++|+.||++|+.||.|+.|+.|+.||+.+ ++. |++
T Consensus 72 ~FIe~Rr~~Lq~FL~ria~hp~L~~s~~~~~FL~~~~~~~~~~~~ 116 (127)
T cd07286 72 DFISKRRKGLIWWMDHMCSHPVLARCDAFQHFLTCPSTDEKAWKQ 116 (127)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccccChHHHHHhcCCcchhHHHhh
Confidence 999999999999999999999999999999999976 333 764
No 10
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.98 E-value=8.2e-30 Score=224.18 Aligned_cols=240 Identities=19% Similarity=0.314 Sum_probs=198.6
Q ss_pred CccccCChhhhcccccChhhHHH--hhhccCCCCCCCcchHHHHHHhhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHH
Q 043025 123 HPELQQSEDLKTFLQADEETMER--LRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFEL 200 (403)
Q Consensus 123 ~~~l~~~~~~~~FL~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~i~~l 200 (403)
||+|+.++.|+.||++++ |+. .++..+|. +.++..++.+++.+ ...+..+|++|.++++|++.+
T Consensus 1 HPvLs~~~~~~~FL~s~~--W~~~~~~~~~~g~-----------~~~~~d~~~~~~s~-~~~v~~~~~eF~Emkey~d~L 66 (243)
T cd07666 1 HPTLTFNEDFKIFLTAQA--WELSSHKKQGPGL-----------LSRMGQTVKAVASS-VRGVKNRPEEFTEMNEYVEAF 66 (243)
T ss_pred CCccccChHHHHHHcCch--HHHHHHHhcchhh-----------hhhhHHHHHHHHHh-ccccCCCCHHHHHHHHHHHHH
Confidence 899999999999999975 653 22222222 22222233333222 112455799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 043025 201 ENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYV 280 (403)
Q Consensus 201 e~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~ 280 (403)
+.+|..+.+++.+++++..++...+.+||..+..||.+|.+ |+..++.+|.+++..+.....+...+...|.++|++|+
T Consensus 67 ~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~-L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv 145 (243)
T cd07666 67 SQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEE-LADSLKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYV 145 (243)
T ss_pred HHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999976 99999999999999999988888989999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 281 RAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRF 360 (403)
Q Consensus 281 ~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f 360 (403)
.|+.++|.+|+.|..+..+++...+.+.++ +.+| ..++.+|.+++.+++++ +..++.|+.||
T Consensus 146 ~y~~slK~vlk~R~~~Q~~le~k~e~l~k~----------~~dr-~~~~~ev~~~e~kve~a-------~~~~k~e~~Rf 207 (243)
T cd07666 146 LYSETLMGVIKRRDQIQAELDSKVEALANK----------KADR-DLLKEEIEKLEDKVECA-------NNALKADWERW 207 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hhhH-HHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 999999999999987777777766655542 3455 46667777777766666 66699999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 361 QEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLP 395 (403)
Q Consensus 361 ~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~ 395 (403)
+..|..||+.+|.+|++.+|.++++++..|+.|+.
T Consensus 208 ~~~k~~D~k~~~~~yae~~i~~~~~~~~~We~fl~ 242 (243)
T cd07666 208 KQNMQTDLRSAFTDMAENNISYYEECLATWESFLH 242 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999974
No 11
>KOG1660 consensus Sorting nexin SNX6/TFAF2, contains PX domain [Defense mechanisms]
Probab=99.98 E-value=1.7e-30 Score=230.14 Aligned_cols=344 Identities=20% Similarity=0.350 Sum_probs=281.0
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHH--hhcCCccCCCCCCCcccccc---
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLF--EKYKGIFIPPLPEKSAVEKF--- 99 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~--~~~p~~~iP~lP~k~~~~~~--- 99 (403)
.+.|.|++..-..+. +-|++.+.+.+|.|. +.+.|.|-..+|.|||..+. ..|.|.++||-|+++.+-..
T Consensus 25 s~~~eis~a~se~~k----vK~tv~t~t~lp~~~-~e~~v~r~Heef~wlh~~i~~~e~yaG~iiPp~p~~p~fda~rek 99 (399)
T KOG1660|consen 25 SLLVEISDALSEIGK----VKFTVHTRTTLPLFM-PEFSVVRQHEEFVWLHDTIEENEDYAGVIIPPAPPRPDFDASREK 99 (399)
T ss_pred ceeeeechhhhhccc----ceeeEEEeeeccCCC-CccceeeeecceeeeeehhhhccCcCceecCCCCCCCCCCCChHH
Confidence 445555555444433 479999999999998 89999999999999998877 67899999999999986421
Q ss_pred ---------CC------------CHHHHHHHH---HHHHHHHHHHhcCccccCChhhhcccccChhh-HHHhhhccCCCC
Q 043025 100 ---------RF------------SAEFIEMRR---QGLDLFVNRIASHPELQQSEDLKTFLQADEET-MERLRSQDTGYF 154 (403)
Q Consensus 100 ---------~~------------~~~~i~~R~---~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~~-~~~~~~~~~~~~ 154 (403)
.+ ..+++..-+ .+-+.||++|+.||+|+.+..|+.||+.+.+. .++..+
T Consensus 100 lQkLGeGe~~mTkEEf~KmK~elEaeyLA~fKKTvamhEvfl~RlaahPvlr~d~nf~vflEy~qdLsvr~KNk------ 173 (399)
T KOG1660|consen 100 LQKLGEGEGWMTKEEFLKMKQELEAEYLARFKKTVAMHEVFLRRLAAHPVLRLDQNFSVFLEYDQDLSVRGKNK------ 173 (399)
T ss_pred HHHhcCCcccccHHHHHHHHHHhhhHHHHHHHHhhccHHHHHHHHhcCCeeecccchhhhhhhcccccccccch------
Confidence 11 222332222 35578999999999999999999999988543 322111
Q ss_pred CCCcchHHHHHHhhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 155 KKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKL 234 (403)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~ 234 (403)
...+.++++++..+...++.++ .+.+.|++|+.-+.|+..+..+++...-.++++...++..+.++..+|..++.
T Consensus 174 ---kE~~~~f~k~~~kSAdeillSg--~lkdVddFfe~ek~fl~ey~~~ikdas~kadKmt~~hK~~~ddy~~i~~~~~~ 248 (399)
T KOG1660|consen 174 ---KESFGGFLKRFVKSADEILLSG--KLKDVDDFFETEKNFLKEYHFRIKDASLKADKLTRAHKSVGDDYDQIGNRLNR 248 (399)
T ss_pred ---hhhhhHHHHHHhhhhhheeeec--ceeehhHHHHhhhHHHHHHhhHHhhhccchHHhhhhcccccccHHHHHHHHHH
Confidence 1245677777777666555443 25677999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 043025 235 LGACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINL 314 (403)
Q Consensus 235 l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l 314 (403)
++..+...+...+-..++.++..+.+..+....+...+.+.|++|.....+.++++-+|.+++.+|+++...|++.+.+
T Consensus 249 lg~ed~~~v~~~~l~~~e~f~~~~k~e~Rvs~dedlkL~d~l~yy~r~~~aakdllyRr~Rcl~~ye~ank~l~kar~k- 327 (399)
T KOG1660|consen 249 LGEEDAANVKKFQLKEAEYFEEESKVERRVSSDEDLKLGDTLRYYDRDSCAAKDLLYRRERCLADYEAANKNLEKARAK- 327 (399)
T ss_pred hhhhhhcccceeeecchhHHHHHHhHhhhhchHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHhc-
Confidence 9988766566666677888888888888888888899999999999999999999999999999999998887765432
Q ss_pred HHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 315 DKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLL 394 (403)
Q Consensus 315 ~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~ 394 (403)
+ .++..++...+.+-++|+.|+.+.+.|+..|...|+..|++.|.++++..|++++..+...++++
T Consensus 328 ------n--------kdv~~ae~~q~e~c~kfe~~s~~~k~eli~fk~rrvaaf~knl~el~eleikhak~~~~ll~~~~ 393 (399)
T KOG1660|consen 328 ------N--------KDVHAAEAAQQEACQKFESISESAKEELIGFKTRRVAAFKKNLVELSELEIKHAKTNYSLLRQCL 393 (399)
T ss_pred ------c--------ccchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHhhhhhHHHHHHHH
Confidence 1 24556677788899999999999999999999999999999999999999999999999999998
Q ss_pred HHhhh
Q 043025 395 PKLEA 399 (403)
Q Consensus 395 ~~~~~ 399 (403)
..+++
T Consensus 394 ~~lk~ 398 (399)
T KOG1660|consen 394 LALKE 398 (399)
T ss_pred HHhhc
Confidence 87764
No 12
>cd07282 PX_SNX2 The phosphoinositide binding Phox Homology domain of Sorting Nexin 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sort
Probab=99.98 E-value=3e-32 Score=217.65 Aligned_cols=113 Identities=43% Similarity=0.757 Sum_probs=105.8
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcC--CccCCCCCCCcccccc----
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYK--GIFIPPLPEKSAVEKF---- 99 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p--~~~iP~lP~k~~~~~~---- 99 (403)
++|+|+||+++++|+++|++|.|.+++++|.|....|.|+|||+||.|||+.|.+.|| |+++||||+|+.++..
T Consensus 1 ~~i~V~dP~~~~~g~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~g~~iPplP~K~~~~~~~~~~ 80 (124)
T cd07282 1 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSRSEFSVRRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKV 80 (124)
T ss_pred CEEEEeCCeEecCCccCeEEEEEEeccCCCccCCCceEEEEehHHHHHHHHHHHHhCCCCCceeCCCCCCcccccccccc
Confidence 5799999999999999999999999999999999999999999999999999999986 8899999999987631
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 100 ----RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 100 ----~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
+++++||++||.+||.||++|++||.|++|+.|+.||++
T Consensus 81 ~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 123 (124)
T cd07282 81 GKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLES 123 (124)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHhcCcccccChHHHHhhcC
Confidence 358999999999999999999999999999999999986
No 13
>cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P
Probab=99.98 E-value=4.2e-32 Score=214.14 Aligned_cols=112 Identities=38% Similarity=0.723 Sum_probs=107.8
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHH
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEF 105 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~ 105 (403)
+.|.|+||.+++++.++|++|.|.++++.++|....|.|+|||+||.|||+.|...||++++||||+|+.++ +++++|
T Consensus 1 ~~i~V~dp~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~iP~lP~K~~~~--~~~~~f 78 (112)
T cd06861 1 FEITVGDPHKVGDLTSAHTVYTVRTRTTSPNFEVSSFSVLRRYRDFRWLYRQLQNNHPGVIVPPPPEKQSVG--RFDDNF 78 (112)
T ss_pred CEEEEcCcceecCCccCeEEEEEEEEeCCCCCCCCccEEEeehHHHHHHHHHHHHHCCCCccCCCCCccccc--CCCHHH
Confidence 479999999999999999999999999999898899999999999999999999999999999999999998 899999
Q ss_pred HHHHHHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 106 IEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 106 i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
|++||++|+.||+.|+.||.|++|+.|+.||+++
T Consensus 79 ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~ 112 (112)
T cd06861 79 VEQRRAALEKMLRKIANHPVLQKDPDFRLFLESE 112 (112)
T ss_pred HHHHHHHHHHHHHHHHCCcccccCcHHHHhcCCC
Confidence 9999999999999999999999999999999864
No 14
>cd06860 PX_SNX7_30_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily consists of SNX7, SNX30, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal
Probab=99.98 E-value=5.7e-32 Score=214.33 Aligned_cols=114 Identities=46% Similarity=0.738 Sum_probs=106.7
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCcccc--ccCCCH
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVE--KFRFSA 103 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~--~~~~~~ 103 (403)
+.|.|+||+++++|.++|++|.|.++++.++++...|.|+|||+||.|||+.|...||++++||||+|..+. ..++++
T Consensus 1 ~~v~V~dP~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPpLP~K~~~~~~~~~~~~ 80 (116)
T cd06860 1 LFITVDNPEKHVTTLETYITYRVTTKTTRSEFDSSEYSVRRRYQDFLWLRQKLEESHPTHIIPPLPEKHSVKGLLDRFSP 80 (116)
T ss_pred CEEEEcCCeeccCCCcCEEEEEEEEeeCCCCcCCCceEEEeeHHHHHHHHHHHHHHCCCCccCCCCCcchhhhhcccCCH
Confidence 479999999999999999999999999999999999999999999999999999999999999999999852 126899
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 104 EFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 104 ~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
+||++||++||.||++|+.||.|++|+.|+.||+.+
T Consensus 81 ~fie~Rr~~Le~fL~~i~~hp~l~~s~~l~~FLt~~ 116 (116)
T cd06860 81 EFVATRMRALHKFLNRIVEHPVLSFNEHLKVFLTAK 116 (116)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccccCcHHHHhhcCC
Confidence 999999999999999999999999999999999863
No 15
>cd07295 PX_Grd19 The phosphoinositide binding Phox Homology domain of fungal Grd19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer.
Probab=99.98 E-value=7.7e-32 Score=212.72 Aligned_cols=114 Identities=41% Similarity=0.692 Sum_probs=109.4
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHH
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAE 104 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~ 104 (403)
++.|.|+||.++++|.+.|++|.|.+.++.++|....+.|+||||||.|||..|...+|++.+||||+|..++ +++++
T Consensus 1 ~~~i~V~dP~~~~~g~~~y~~Y~I~~~t~~~~f~~~~~~V~RRysdF~~L~~~L~~~~~~~~iPplP~K~~~~--~~~~~ 78 (116)
T cd07295 1 FLEIEVRNPKTHGIGRGMFTDYEIVCRTNIPAFKLRVSSVRRRYSDFEYFRDILERESPRVMIPPLPGKIFTN--RFSDE 78 (116)
T ss_pred CeEEEEeCCcEecCCCCCEEEEEEEEEeCCccccccceEEecChhHHHHHHHHHHHHCCCCccCCCCCCcccc--CCCHH
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999888 89999
Q ss_pred HHHHHHHHHHHHHHHHhcCcccc-CChhhhcccccCh
Q 043025 105 FIEMRRQGLDLFVNRIASHPELQ-QSEDLKTFLQADE 140 (403)
Q Consensus 105 ~i~~R~~~L~~fl~~~~~~~~l~-~~~~~~~FL~~~~ 140 (403)
||++||.+|+.||++|++||.|+ .++.|..||+.++
T Consensus 79 ~ie~Rr~~Le~fL~~i~~~p~l~~~s~~~~~FL~~~~ 115 (116)
T cd07295 79 VIEERRQGLETFLQSVAGHPLLQTGSKVLAAFLQDPK 115 (116)
T ss_pred HHHHHHHHHHHHHHHHhcCHhhhhCCHHHHHhcCCCC
Confidence 99999999999999999999998 5899999999885
No 16
>cd07293 PX_SNX3 The phosphoinositide binding Phox Homology domain of Sorting Nexin 3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX3 associates with early endosomes through a PX domain-mediated interaction with phosphatidylinositol-3-phosphate (PI3P). It associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor f
Probab=99.97 E-value=8.5e-32 Score=214.24 Aligned_cols=114 Identities=40% Similarity=0.717 Sum_probs=106.3
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccc------
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEK------ 98 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~------ 98 (403)
+++|.|+||.++++|.++|++|.|.++++.|.|....|.|+||||||.|||+.|.. +|++++||||+|..++.
T Consensus 1 ~~~i~v~dP~~~~~~~~~y~~Y~I~~~t~~p~~~~~~~~V~RRYsDF~~L~~~L~~-~~~~~iPpLP~K~~~~~~~~~~~ 79 (123)
T cd07293 1 FLEIDVTNPQTVGVGRGRFTTYEIRLKTNLPIFKLKESTVRRRYSDFEWLRSELER-ESKVVVPPLPGKALFRQLPFRGD 79 (123)
T ss_pred CeEEEecCCeEecCCCcCEEEEEEEEEeCCCccccCceEEECCchHHHHHHHHHHh-ccCCccCCCCCCchhhhcccccc
Confidence 57999999999999999999999999999999988999999999999999999985 58999999999998641
Q ss_pred -cCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 99 -FRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 99 -~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
.+++++|+++||++|+.||++|++||.|++|+.|+.||+.+
T Consensus 80 ~~~~~~~fie~Rr~~Le~FL~~i~~hP~l~~~~~l~~FL~~~ 121 (123)
T cd07293 80 DGIFDDSFIEERKQGLEQFLNKVAGHPLAQNERCLHMFLQDE 121 (123)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHcCcccccCcHHHhhcCCC
Confidence 26899999999999999999999999999999999999864
No 17
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.97 E-value=2.6e-29 Score=224.72 Aligned_cols=210 Identities=40% Similarity=0.641 Sum_probs=203.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHHHHHHHH
Q 043025 186 SNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD---ALGKAFSELGMKSEALSVKLQ 262 (403)
Q Consensus 186 ~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~---~L~~~~~~~~~~~~~~~~~~~ 262 (403)
+|++|.++++|++.|+.+++.+.+.+.+++++..+++.++.+||.+|..|+..|.. .|+.++..+|++++.++....
T Consensus 2 ~d~~f~~~~~~v~~le~~l~~l~~~~~~~~k~~~~l~~~~~elg~~~~~Ls~~e~~~~~~l~~~~~~~~~~~~~~~~~~~ 81 (218)
T cd07596 2 EDQEFEEAKDYILKLEEQLKKLSKQAQRLVKRRRELGSALGEFGKALIKLAKCEEEVGGELGEALSKLGKAAEELSSLSE 81 (218)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999865 599999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccc---CcchHHHHHHHHHHHHHHH
Q 043025 263 REAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLT---RSDKVGEAEIEYKELKAES 339 (403)
Q Consensus 263 ~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~---~~~ki~~l~~~i~~~~~~~ 339 (403)
.++..+...|+++|++|.+++.+++++|.+|+.++.+++.+.+.+.+++.+++++++. +++|+..++.+|.+++.++
T Consensus 82 ~~~~~~~~~~~e~L~~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~ 161 (218)
T cd07596 82 AQANQELVKLLEPLKEYLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESAL 161 (218)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999843 6789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 340 EDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLP 395 (403)
Q Consensus 340 ~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~ 395 (403)
+.++.+++.|+..++.|+.+|+..+..+|+.+|.+|++.++.|+++++++|+++.|
T Consensus 162 ~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l~~~~~~qi~~~~~~~~~W~~~~~ 217 (218)
T cd07596 162 EEARKRYEEISERLKEELKRFHEERARDLKAALKEFARLQVQYAEKIAEAWESLLP 217 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999976
No 18
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.97 E-value=8e-29 Score=216.13 Aligned_cols=239 Identities=18% Similarity=0.305 Sum_probs=201.1
Q ss_pred CccccCChhhhcccccChhhHHHhhhccCCCCCCCcchHHHHHHhhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHHHH
Q 043025 123 HPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELEN 202 (403)
Q Consensus 123 ~~~l~~~~~~~~FL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~i~~le~ 202 (403)
||+|+.++.|+.||+++ .|...++...|...+..+.. +.+... . .+..++++|.++++|++.+..
T Consensus 1 HPvLs~~~~f~~FLts~--dw~a~~kq~~~~~~~~~~~~----~~lna~--------~-kv~~~d~eF~e~~ey~d~l~~ 65 (240)
T cd07667 1 HPVLSFNEHFNVFLTAK--DLNAYKKQGIALLSKMGESV----KYVTGG--------Y-KLRSRPLEFAAIGDYLDTFAL 65 (240)
T ss_pred CCccccChHHHHHHcch--hHHHHhhcccccccccchHH----HHHHHH--------h-ccCCCChHHHHHHHHHHHHHH
Confidence 89999999999999999 47765555433322211111 111111 1 245679999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 043025 203 HLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRA 282 (403)
Q Consensus 203 ~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~ 282 (403)
.+.++.++..+++++..++..++.++|..|..|+..|. .|+..+..++.+++..+.......+.....|.++|++|..|
T Consensus 66 ~l~~ieki~~Rv~kr~~~l~~d~~e~~~~f~~ws~lE~-~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~yl~~Lke~~~Y 144 (240)
T cd07667 66 KLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSGLEG-ELAEPLEGVSACIGNCSTALEELTEDMTEDFLPVLREYILY 144 (240)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999995 58899999999999999999999998888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 283 VQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQE 362 (403)
Q Consensus 283 ~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~ 362 (403)
+.|+|.+++.|++++.+|+.+.+.+.. +.+++.+ ++.+++.++..++.+++.++.|+.+|+.
T Consensus 145 ~~slk~vlK~RdqkQ~d~E~l~E~l~~-----------rre~~~k-------Le~~ie~~~~~ve~f~~~~~~E~~~Fe~ 206 (240)
T cd07667 145 SESMKNVLKKRDQVQAEYEAKLEAVAL-----------RKEERPK-------VPTDVEKCQDRVECFNADLKADMERWQN 206 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998887632 2233444 4445555566678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 363 QKTLDMGIAFHNFSKGQARLASSIADAWRTLLP 395 (403)
Q Consensus 363 ~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~ 395 (403)
.|..+|+.+|.+||..||+||+++++.|+.++|
T Consensus 207 ~K~~e~k~~l~~~Ad~~i~fy~~~~~~We~~l~ 239 (240)
T cd07667 207 NKRQDFRQLLMGMADKNIQYYEKCLTAWESIIP 239 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999975
No 19
>cd06894 PX_SNX3_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily is composed of SNX3, SNX12, and fungal Grd19. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. SNX3/Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the
Probab=99.97 E-value=1.4e-31 Score=213.46 Aligned_cols=114 Identities=41% Similarity=0.738 Sum_probs=106.5
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCcccc-------
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVE------- 97 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~------- 97 (403)
+++|.|+||+++++|.++|++|.|.+.++.|.|....|.|+||||||.|||..|... |++++||||+|..+.
T Consensus 1 ~~~i~V~dP~~~~~~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~iPpLP~K~~~~~~~~~~~ 79 (123)
T cd06894 1 FLEIDVVNPQTHGVGKKRFTDYEVRMRTNLPVFKKKESSVRRRYSDFEWLRSELERD-SKIVVPPLPGKALKRQLPFRGD 79 (123)
T ss_pred CeEEEEeCCcEecCCCcCEEEEEEEEecCCcccccCccEEEecCHHHHHHHHHHHHc-CCCccCCCCCCceecccccccc
Confidence 589999999999999999999999999999999889999999999999999999865 999999999999862
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 98 KFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 98 ~~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
..+++++||++||++|+.||++|++||.|++|+.|+.||+.+
T Consensus 80 ~~~~~~~fie~Rr~~L~~fL~~i~~hp~l~~s~~~~~FL~~~ 121 (123)
T cd06894 80 DGIFEEEFIEERRKGLETFINKVAGHPLAQNEKCLHMFLQEE 121 (123)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHcChhhccCCHHHHhcCCC
Confidence 127899999999999999999999999999999999999875
No 20
>cd07294 PX_SNX12 The phosphoinositide binding Phox Homology domain of Sorting Nexin 12. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. The specific function of SNX12 has yet to be elucidated.
Probab=99.97 E-value=2e-31 Score=213.74 Aligned_cols=117 Identities=39% Similarity=0.687 Sum_probs=107.9
Q ss_pred CcEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccc-----
Q 043025 24 PYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEK----- 98 (403)
Q Consensus 24 ~~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~----- 98 (403)
.+++|+|+||+++++|+++|++|.|.++++.|.|....+.|+||||||.|||+.|.. .|++++||||+|+.+..
T Consensus 2 ~~~~i~v~dP~~~~~g~~~yt~Y~V~~~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~-~~g~~iPpLP~K~~~~~~~~~~ 80 (132)
T cd07294 2 NFLEIDIFNPQTVGVGRNRFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELER-DSKIVVPPLPGKALKRQLPFRG 80 (132)
T ss_pred ceEEEEeeCCeEecCCCCCEEEEEEEEEeCCCCcccceeEEeCCccHHHHHHHHHHH-cCCCccCCCCCCceeccccccc
Confidence 479999999999999999999999999999999988999999999999999999986 48999999999997321
Q ss_pred --cCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccChh
Q 043025 99 --FRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEE 141 (403)
Q Consensus 99 --~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~ 141 (403)
.+++++||++||++|+.||++|++||.|++++.|+.||+.+..
T Consensus 81 ~~~~~~~~fie~Rr~~Le~FL~~i~~hp~l~~~~~l~~FL~~~~~ 125 (132)
T cd07294 81 DEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQDETI 125 (132)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhcCCCCc
Confidence 1679999999999999999999999999999999999998763
No 21
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=99.97 E-value=8.8e-29 Score=213.96 Aligned_cols=217 Identities=15% Similarity=0.272 Sum_probs=197.4
Q ss_pred HHHhhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 043025 164 IFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDAL 243 (403)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L 243 (403)
+|+++..+....+.++ ++.|.|++|++.+.|+..|+.+|+.+...+++++.++++++.++.+||.++..|+.+|.+.|
T Consensus 2 ~~k~~~k~~D~~v~~~--~~~d~D~~Fe~~k~~l~~l~~~Lk~~~~~~~~lv~~rkela~~~~~fs~al~~L~~~E~t~L 79 (219)
T cd07621 2 FLKSISKSADEELLLS--GQKDVDEFFEQEKNFLVEYHNRIKDATAKADKMTRKHKDVADSYIKISAALTQLATSEPTPL 79 (219)
T ss_pred HHHHhHHhhhHHHHcC--CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchH
Confidence 3455554444244433 46788999999999999999999999999999999999999999999999999999998899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcc
Q 043025 244 GKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSD 323 (403)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ 323 (403)
+..+..+|+.++.+..+..+++..+...|.++|++|++++.|+|++|.+|.+++++|++++..|.+++.+ +
T Consensus 80 ~~~ls~lae~~ek~~~l~~r~A~~d~l~L~e~L~~Y~r~~~A~K~~l~rR~ral~~~q~A~k~L~KaR~k--------~- 150 (219)
T cd07621 80 DKFLLKVAETFEKLRKLEGRVASDEDLKLSDTLRYYMRDTQAAKDLLYRRLRCLANYENANKNLEKARAK--------N- 150 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc--------h-
Confidence 9999999999999999999999999999999999999999999999999999999999999999988742 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKL 397 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~ 397 (403)
.+|.+++.++++++.+|+.|+..++.|+.+|+..|..+|+.+|.+|++.++++++..+++|.+++..+
T Consensus 151 ------~~v~~AE~~~~~a~~~Fe~iS~~~k~El~rF~~~Rv~~fk~~lve~aE~~ik~Ak~~~~~l~~~~~~l 218 (219)
T cd07621 151 ------KDVHAAEAAQQEACEKFESMSESAKQELLDFKTRRVAAFRKNLVELAELEIKHAKAQIQLLKNCLAAL 218 (219)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666777889999999999999999999999999999999999999999999999999999998654
No 22
>cd07285 PX_SNX9 The phosphoinositide binding Phox Homology domain of Sorting Nexin 9. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. T
Probab=99.97 E-value=1.4e-31 Score=211.06 Aligned_cols=111 Identities=35% Similarity=0.657 Sum_probs=102.2
Q ss_pred EEEEEcCceEeC--CCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCC-ccCCCCCCCccccccCCC
Q 043025 26 LSVSVTDPVKLG--NGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG-IFIPPLPEKSAVEKFRFS 102 (403)
Q Consensus 26 ~~v~V~~~~~~~--~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~-~~iP~lP~k~~~~~~~~~ 102 (403)
+.|.|+||++++ +|+++|++|.|.+.+ .++.|+||||||.|||+.|...||+ +++||||+|..++ +++
T Consensus 1 ~~~~V~dp~k~~~~~g~~~Yv~Y~I~~~~-------~~~~V~RRYsDF~~L~~~L~~~~~~~i~vPplP~K~~~g--~f~ 71 (126)
T cd07285 1 FDCVVADPRKGSKMYGLKSYIEYQLTPTN-------TNRSVNHRYKHFDWLYERLLVKFGLAIPIPSLPDKQVTG--RFE 71 (126)
T ss_pred CEEEEcCcccccCCCCCcCeEEEEEEecc-------CCeEeeCCccHHHHHHHHHHHhcCCCcccCCCCCccccC--CCC
Confidence 469999999997 788999999999875 4689999999999999999999975 4599999999999 899
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccChhh-HHH
Q 043025 103 AEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEET-MER 145 (403)
Q Consensus 103 ~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~~-~~~ 145 (403)
++||++||++|+.||++|++||.|+.++.|+.||+.+++. |+.
T Consensus 72 ~~FIe~Rr~~Le~FL~ri~~hP~L~~~~~l~~FL~~~~~~~w~~ 115 (126)
T cd07285 72 EEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEKEWKT 115 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcCcCCCcHHHHHhCCCCHHHHHh
Confidence 9999999999999999999999999999999999987766 764
No 23
>KOG2528 consensus Sorting nexin SNX9/SH3PX1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.2e-30 Score=234.95 Aligned_cols=294 Identities=23% Similarity=0.388 Sum_probs=229.9
Q ss_pred CCCCcEEEEEcCceEeC--CCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccc
Q 043025 21 SSQPYLSVSVTDPVKLG--NGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEK 98 (403)
Q Consensus 21 ~~~~~~~v~V~~~~~~~--~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~ 98 (403)
++...+.|.|.+|.++. .|+++|+.|.++-.. ....|.|||..|.|||.+|...||.+.|||||+|...+
T Consensus 181 ~~~~~~~c~v~~p~k~sk~kg~ks~i~y~ltpt~-------t~~~v~rrykhfdwl~~rl~~kf~~i~vp~Lpdkq~~g- 252 (490)
T KOG2528|consen 181 ANPSPFRCVVDDPKKESKFKGLKSYIAYQLTPTH-------TNISVSRRYKHFDWLYERLLLKFPLIPVPPLPDKQVTG- 252 (490)
T ss_pred cCCCCeeEEecCcccccccccchheeEeeecccc-------cCcchhhcccccHHHHHHHHhhcccccCCCCCcccccc-
Confidence 44456799999999986 788999999997643 34559999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccC-hhh-HH-HhhhccCCCCCCCcchHHHHHHhhhhhhhhh
Q 043025 99 FRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD-EET-ME-RLRSQDTGYFKKKPADLMQIFKDVQSKVSDV 175 (403)
Q Consensus 99 ~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~-~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (403)
++.++||++||+.|+-|++.+++||+|..++.|..||++. ++. |+ ..|+.+++.. .. .++.++. +
T Consensus 253 -r~Ee~fi~~rr~~l~~wm~~~~~hpvlsq~evf~hFl~c~~dek~Wk~GKRkAEkDe~-----~g-~~~~~~~-p---- 320 (490)
T KOG2528|consen 253 -RFEEDFIEKRRKGLQWWMNHMCRHPVLSQCEVFQHFLTCPTDEKAWKQGKRKAEKDEL-----VG-NFLLTIS-P---- 320 (490)
T ss_pred -chhHHHHHHHHHHHHHHHHHhhcchHhhhhHHHHHHHcCCcccccccccccccccCCc-----cc-ceeeccC-C----
Confidence 9999999999999999999999999999999999999996 555 87 3555554332 11 2222222 1
Q ss_pred hcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 043025 176 VLGKEKPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRH--------RELGESLSDFGKAAKLLGACEGDALGKAF 247 (403)
Q Consensus 176 ~~~~~~~~~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~--------~~l~~~~~~l~~~~~~l~~~e~~~L~~~~ 247 (403)
.+....+.+...+.++.+++.|+..+..|..+.....++. +.+++++..|+.+|..-....+..|+.++
T Consensus 321 ---~~ld~~~ve~~ve~~~~f~k~md~~~~~l~~~~~~~~k~~~~~~kke~qk~g~a~~~l~~~f~~d~~~~s~~L~~ai 397 (490)
T KOG2528|consen 321 ---APLDLQEVEMQVERFKRFTKKMDDAVRQLNTTANEFWKRKVGGFKKEYQKMGSAFQTLAQAFEIDPTVDSRPLNEAI 397 (490)
T ss_pred ---cccchHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHhcccchHHHHHHHHHHHHHHHhhhcCccccccchhhhh
Confidence 1123456688889999999999999999888877776653 55555555555555443333356899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHH
Q 043025 248 SELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGE 327 (403)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~ 327 (403)
..+|..+..++.+++++.......+.+.|..|.+.+..+-+++.-...+++.....+.-
T Consensus 398 ~~~g~~y~~Ig~lfa~qpk~Dl~p~~d~l~~y~G~l~nfpDII~~hK~A~~k~kes~~~--------------------- 456 (490)
T KOG2528|consen 398 GLTGDAYHEIGELFAEQPKQDLDPVMDLLVLYQGHLQNFPDIIHVHKGALAKVKESEQL--------------------- 456 (490)
T ss_pred hhhhHHHHHHHHHhhcccccchhHHHHHHHHhhcccccccchhhhhHHHHHHHHHHHHH---------------------
Confidence 99999999999999999999999999999999999999999886665555444333111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 328 AEIEYKELKAESEDSTRRFETIVRLM-NEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIAD 388 (403)
Q Consensus 328 l~~~i~~~~~~~~~~~~~~~~i~~~~-~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~ 388 (403)
...- ..|+.+|..+|+.++ ..||.||+.++.
T Consensus 457 ----------------------~~~g~~aem~hf~~~~~~~~--------~qqi~Fyq~v~~ 488 (490)
T KOG2528|consen 457 ----------------------VAEGFKAEMQHFLQEREYDF--------SQQIIFYQKVAQ 488 (490)
T ss_pred ----------------------hhhhHHHHHHHHHhhccccH--------HHHHHHHHHHhh
Confidence 0011 789999999999998 778888887764
No 24
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=99.97 E-value=3.1e-28 Score=209.42 Aligned_cols=216 Identities=15% Similarity=0.266 Sum_probs=197.9
Q ss_pred HHHhhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 043025 164 IFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDAL 243 (403)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L 243 (403)
+|+++..++.++..++ ++|+|++|++.+.|+..|+.+|+.+...++++++++++++.++..|+.++..++..+++.|
T Consensus 2 ~~~~~~k~~~e~~~~~---~ke~D~~Fe~~k~~l~~l~~~Lk~a~~~~~~lv~~rkela~~~~~~s~al~~l~~ee~t~L 78 (218)
T cd07663 2 FFKNMVKSADEVLFSG---VKEVDEFFEQEKTFLVNYYNRIKDSCAKADKMTRSHKNVADDYIHISAALNSVAAEEPTVI 78 (218)
T ss_pred HHHHHHHhHHHHHHhc---cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchH
Confidence 5677777777776653 5688999999999999999999999999999999999999999999999998875556789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcc
Q 043025 244 GKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSD 323 (403)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ 323 (403)
+.++..+|+.++.+..+...++..+...|.++|++|++++.|+|++|.+|.+++++|++++..|.+++.+
T Consensus 79 ~kals~lae~~Ek~~~l~~r~A~~d~~~L~e~L~~Y~r~~~A~K~ll~rR~ral~~~e~A~~~L~KaR~k---------- 148 (218)
T cd07663 79 KKYLLKVAELFEKLRKVEDRVASDQDLKLTELLRYYMLNIEAAKDLLYRRARALADYENSNKALDKARLK---------- 148 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------
Confidence 9999999999999999999999999999999999999999999999999999999999999988877621
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKL 397 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~ 397 (403)
..+|.+++.++++++.+|+.|+..++.|+.+|+..|..+|+.+|.+|++.+|++++.....|.+++..+
T Consensus 149 -----~kev~~aE~~~~ea~~~Fe~IS~~~k~El~rF~~~Rv~~Fk~~lve~~E~~ik~ak~~~~~~~~~~~~~ 217 (218)
T cd07663 149 -----SKDVKQAEAHQQECCQKFEKLSESAKQELISFKRRRVAAFRKNLIEMTELEIKHAKNNVSLLQSCIDLF 217 (218)
T ss_pred -----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345677888888999999999999999999999999999999999999999999999999999988654
No 25
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.97 E-value=1.3e-28 Score=214.76 Aligned_cols=192 Identities=18% Similarity=0.311 Sum_probs=180.8
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 043025 183 VEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQ 262 (403)
Q Consensus 183 ~~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~ 262 (403)
+..+|++|.++++|+..|+.+|+.+.+++.++++++.+++.++.+||.+|+.|+.+|.+ |+.+++.+|++++..+....
T Consensus 9 ~~~~d~eF~e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~~E~~-L~~~L~~~~~~~~~~~~~~~ 87 (200)
T cd07624 9 LKNRSPEFDKMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWSASETE-LAPLLEGVSSAVERCTAALE 87 (200)
T ss_pred hcCCCccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999999999999999999999974 89999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHH
Q 043025 263 REAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDS 342 (403)
Q Consensus 263 ~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~ 342 (403)
.+++.....|.+||++|+.|+.++|.+|+.|+++..+|+.+.+.|.+++.+ ++.+++.+
T Consensus 88 ~l~~~~~~~f~e~Lkey~~y~~svk~~l~~R~~~q~~~e~~~e~L~~k~~~---------------------l~~ev~~a 146 (200)
T cd07624 88 VLLSDHEFVFLPPLREYLLYSDAVKDVLKRRDQFQIEYELSVEELNKKRLE---------------------LLKEVEKL 146 (200)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHH
Confidence 999999999999999999999999999999999999999999999887644 45567778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 343 TRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 343 ~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~ 396 (403)
+.+++.++..++.|+.||+..|..||+.+|.+||..||.||+++++.|+.++|.
T Consensus 147 ~~~~e~~~~~~~~E~~rF~~~K~~d~k~~l~~~a~~qi~~~~~~~~~We~~~p~ 200 (200)
T cd07624 147 QDKLECANADLKADLERWKQNKRQDLKKILLDMAEKQIQYYEQCLAAWEEVLPA 200 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 889999999999999999999999999999999999999999999999999863
No 26
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=99.97 E-value=4.8e-28 Score=206.37 Aligned_cols=216 Identities=15% Similarity=0.257 Sum_probs=200.9
Q ss_pred HHHhhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 043025 164 IFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDAL 243 (403)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L 243 (403)
+|+++..+..+++.+ .++|+|+||++.+.|+..|+.+|+.+...+++++..+++++.++..+|.++..|+.+|++.|
T Consensus 2 ~~~~~~k~~de~~~~---~~kd~D~wFe~ek~~l~~~~~~Lk~~~~~~e~l~~~rk~la~~~~~~s~sl~~L~~~e~t~L 78 (218)
T cd07662 2 FFKNVVKSADGVIVS---GVKDVDDFFEHERTFLLEYHNRVKDSSAKSDRMTRSHKSAADDYNRIGSSLYTLGTQDSTDI 78 (218)
T ss_pred HHHhhhhhhhHHHHh---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhH
Confidence 456666666666654 35688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcc
Q 043025 244 GKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSD 323 (403)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ 323 (403)
+..+..+++.++++..+...++..+...|.+.|++|++++.++|++|.+|..++++|++++..|.+++.+ +
T Consensus 79 ~~~l~~laev~eki~~l~~~~A~~e~l~L~e~L~~Y~r~~~A~Kdll~rR~r~l~~~enA~k~L~KaR~~-----~---- 149 (218)
T cd07662 79 CKFFLKVSELFDKTRKIEARVAADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAK-----N---- 149 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----C----
Confidence 9999999999999999999999999999999999999999999999999999999999999999988755 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKL 397 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~ 397 (403)
.+|.+++.++++++.+|+.|+..++.|+.+|+..|..+|+++|.+|++.++++++.....|.+++..+
T Consensus 150 ------kev~~aE~~~~~a~~~Fe~IS~~aK~El~rF~~~Rv~~Fkk~Lv~y~E~~lkhak~~~~~~~~~~~~l 217 (218)
T cd07662 150 ------KDVLQAETTQQLCCQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQSCLAVL 217 (218)
T ss_pred ------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57788899999999999999999999999999999999999999999999999999999999988654
No 27
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.97 E-value=1.3e-27 Score=208.98 Aligned_cols=214 Identities=16% Similarity=0.172 Sum_probs=205.9
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHH
Q 043025 182 PVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE-GDALGKAFSELGMKSEALSVK 260 (403)
Q Consensus 182 ~~~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e-~~~L~~~~~~~~~~~~~~~~~ 260 (403)
|+.|+.++..+++..++.+....+.+...++++++++++|+....+||.++..|+.+| ++.|+++++.+|+....+++.
T Consensus 12 ~p~d~~~el~~~rp~vk~~y~~~~~l~~~~~~lvk~rr~La~~~~dfg~~l~~Ls~~E~~~~L~~a~~kLg~v~~~v~dl 91 (230)
T cd07625 12 PPYDEYTELAEFRPLVKSIYLTAQDLQEKLLRVSKARKQLSLEEADFGQKLIQLSVEETHHGLGNLYEKFGKVLTAVGDI 91 (230)
T ss_pred cCCCCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHhhH
Confidence 3446699999999999999999999999999999999999999999999999999998 478999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccc---CcchHHHHHHHHHHHHH
Q 043025 261 LQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLT---RSDKVGEAEIEYKELKA 337 (403)
Q Consensus 261 ~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~---~~~ki~~l~~~i~~~~~ 337 (403)
...++......|.++|.+|++.+.++|++|.+|+.++.+|+.++..+.+|+.+.++++++ +++|+.++..+|++++.
T Consensus 92 ~~~QA~~d~~tl~d~L~~~~~~~~~vKealtnR~~~~re~~qAq~~~~~K~~~~~rlk~s~~i~~~KvdeA~~~l~eA~~ 171 (230)
T cd07625 92 DSIQATVDMATLYDGLEWISRDAYVVKEALTNRHLLMRELIQAQQNTKSKQEAARRLKAKRDINPLKVDEAIRQLEEATK 171 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999853 48999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 338 ESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLP 395 (403)
Q Consensus 338 ~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~ 395 (403)
..+.+..+|+.|+.+|..|+.+|..++..+|+.+|++|+..+|.++++.+..||++.+
T Consensus 172 ~e~~l~~k~~rIs~nm~~E~~rf~~~~~~dl~~~l~ey~~~~ie~erk~l~~lE~~r~ 229 (230)
T cd07625 172 HEHDLSLKLKRITGNMLIERKEWTDWTEEDLQSAIREYTLRKIEYERKKLSLLERIRL 229 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999999999999999865
No 28
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
Probab=99.97 E-value=4.4e-27 Score=228.75 Aligned_cols=356 Identities=20% Similarity=0.264 Sum_probs=218.7
Q ss_pred cEEEEEcCceEeCCC---CcceEEEEEEEEecCCCCCCCce---EEeeccchHHHHHHHHHhhcCCccCCCCCCCccccc
Q 043025 25 YLSVSVTDPVKLGNG---VQAYISYRVITKTNFPEYQGPEK---IVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEK 98 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~---~~~~~~y~i~~~~~~~~~~~~~~---~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~ 98 (403)
.+.+.|..|.....+ ...|+.|.|...++.|.|..... +|.||||||.|||..|...||.|.|||+|+|+..+.
T Consensus 130 ~~~~~~~~p~s~~~~~~s~~~~~~y~i~~~~n~~~f~~~~~~~~~V~RRySdf~~Lh~~L~~~~p~~~iPplP~K~~~s~ 209 (524)
T COG5391 130 FISSTVSNPQSLTLLVDSRDKHTSYEIITVTNLPSFQLRESRPLVVRRRYSDFESLHSILIKLLPLCAIPPLPSKKSNSE 209 (524)
T ss_pred HhhhccccchhcccccccCCCcceeeEEEeecCccccccccccceeeeccccHHHHHHHhhhhCCCCCCCCCCchhhhcc
Confidence 467888988887644 47899999999999999988887 999999999999999999999999999999999742
Q ss_pred ---cCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccChhhHHHhhhccCCCCCCCcchHHHHHHhhhhhhhhh
Q 043025 99 ---FRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDV 175 (403)
Q Consensus 99 ---~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (403)
.+++++|++.|+.+|+.|++.++.||.+.++. ....|...... +..++..-..-...+
T Consensus 210 ~~~~~~~~~~i~~r~~~L~~~~~~~~~hp~lsn~~--------~~~~~~~~~~~-----------~~~~~~~~~s~~~~~ 270 (524)
T COG5391 210 YYGDRFSDEFIEERRQSLQNFLRRVSTHPLLSNYK--------NSKSWESHSTL-----------LSSFIENRKSVPTPL 270 (524)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHhcCccccccc--------ccccHhhhhHH-----------HHHhhhcccccCccc
Confidence 38999999999999999999999999999877 22224322111 000000000000000
Q ss_pred hcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 043025 176 VLGKEKPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSE 255 (403)
Q Consensus 176 ~~~~~~~~~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~ 255 (403)
+......+...+....++.........++.+.....+.+..........+..+...+..+..............+....+
T Consensus 271 ~~d~~~t~~~~~~~~~el~~~~s~~~~~~~s~~~~~~~i~~~~~~~~e~~t~l~~~~~~l~~~~~~~~~~~~k~~~~~~n 350 (524)
T COG5391 271 SLDLTSTTQELDMERKELNESTSKAIHNILSIFSLFEKILIQLESEEESLTRLLESLNNLLLLVLNFSGVFAKRLEQNQN 350 (524)
T ss_pred ccchhhhhhhchhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 00000111122233333444444444444444444444444444444444445444444432221000000111111111
Q ss_pred HHHHHH-------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-Hhc---------
Q 043025 256 ALSVKL-------QREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLD-KLM--------- 318 (403)
Q Consensus 256 ~~~~~~-------~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~-kl~--------- 318 (403)
...... ..........+...++..-.++.....+++.++..+..+..+...+...-.+-. -..
T Consensus 351 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~e~~~~t~~~l~k~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~t~~~ 430 (524)
T COG5391 351 SILNEGVVQAETLRSSLKELLTQLQDEIKSRESLILTDSNLEKLTDQNLEDVEELSRSLRKNSSQRAVVSQQPEGLTSFS 430 (524)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhhHHHHHHHHhhhhhhhhhhcccccccccc
Confidence 110000 001111112222222222233334444444444444444444443332211100 000
Q ss_pred ------------ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 319 ------------LTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSI 386 (403)
Q Consensus 319 ------------~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~ 386 (403)
+.+..++..++.+++.+++.++.+..++..|++.+..|+.+|...+..++..++..|++..++|++++
T Consensus 431 ~~~~~~~~~~~e~sr~k~~~~Lqq~~~~l~~~L~~a~~d~~~i~e~~~~el~~~~~~~~~~l~~~l~~~~~~hie~~~~~ 510 (524)
T COG5391 431 KLSYKLRDFVQEKSRSKSIESLQQDKEKLEEQLAIAEKDAQEINEELKNELKFFFSVRNSDLEKILKSVADSHIEWAEEN 510 (524)
T ss_pred cccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11234688999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 043025 387 ADAWRTLLPKLEA 399 (403)
Q Consensus 387 ~~~We~~~~~~~~ 399 (403)
++.|..+..+++.
T Consensus 511 Le~W~~v~~~l~~ 523 (524)
T COG5391 511 LEIWKSVKEQLDR 523 (524)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999998874
No 29
>cd06863 PX_Atg24p The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The yeast Atg24p is a sorting nexin (SNX) which is involved in membrane fusion events at the vacuolar surface during pexophagy. This is facilitated via binding of Atg24p to phosphatidylinositol 3-phosphate (PI3P) through its PX domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway.
Probab=99.97 E-value=2.8e-30 Score=206.22 Aligned_cols=113 Identities=45% Similarity=0.699 Sum_probs=105.2
Q ss_pred EEEEEcCceEeC-CCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCcccc---ccCC
Q 043025 26 LSVSVTDPVKLG-NGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVE---KFRF 101 (403)
Q Consensus 26 ~~v~V~~~~~~~-~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~---~~~~ 101 (403)
+.|.|+||.+++ +|.++|++|.|.++++.|.|+...|.|+|||+||.|||+.|...||++++||||+|..+. ..++
T Consensus 1 ~~i~V~dP~~~~~~~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~ 80 (118)
T cd06863 1 LECLVSDPQKELDGSSDTYISYLITTKTNLPSFSRKEFKVRRRYSDFVFLHECLSNDFPACVVPPLPDKHRLEYITGDRF 80 (118)
T ss_pred CEEEEeCcccccCCCccCEEEEEEEEeeCCCCcccCceEEEecHHHHHHHHHHHHHHCcCCcCCCCCCccccccccccCC
Confidence 579999999997 777899999999999999988889999999999999999999999999999999999763 1267
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 102 SAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 102 ~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
+++||++||++|+.||++|+.||.|+.|+.|+.||++
T Consensus 81 ~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~s 117 (118)
T cd06863 81 SPEFITRRAQSLQRFLRRISLHPVLSQSKILHQFLES 117 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCcccccCcHHHhhcCC
Confidence 9999999999999999999999999999999999975
No 30
>cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily is composed of uncharacterized proteins, predominantly from plants, with similarity to sorting nexins. A few members show a similar domain architectu
Probab=99.97 E-value=3.3e-30 Score=205.55 Aligned_cols=112 Identities=47% Similarity=0.754 Sum_probs=104.0
Q ss_pred EEEEcCceEeCCC------CcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCcccccc-
Q 043025 27 SVSVTDPVKLGNG------VQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF- 99 (403)
Q Consensus 27 ~v~V~~~~~~~~~------~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~- 99 (403)
+|+|+||++++++ .++|++|.|.+.++.|++....|.|+|||+||.|||..|...||++.+||||+|..++..
T Consensus 1 ~i~v~dp~~~~~~~~~~~~~~~ytvY~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~ 80 (120)
T cd06865 1 KITVSDPKKEQEPSRVPLGGPPYISYKVTTRTNIPSYTHGEFTVRRRFRDVVALADRLAEAYRGAFVPPRPDKSVVESQV 80 (120)
T ss_pred CeEecCcceecCCccccCCCCCEEEEEEEEecCCCCCCCCceEEEeehHHHHHHHHHHHHHCCCCeeCCCcCCccccccc
Confidence 4899999999875 379999999999988888889999999999999999999999999999999999998522
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 100 RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 100 ~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
+++++||++||.+|+.||+.|+.||.|++|+.|+.||+.
T Consensus 81 ~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 119 (120)
T cd06865 81 MQSAEFIEQRRVALEKYLNRLAAHPVIGLSDELRVFLTL 119 (120)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCceeecCcHHHHhccC
Confidence 369999999999999999999999999999999999986
No 31
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=99.97 E-value=5.2e-30 Score=204.95 Aligned_cols=120 Identities=26% Similarity=0.327 Sum_probs=108.7
Q ss_pred CCCCCCCCCcEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCce-EEeeccchHHHHHHHHHhhcCCccCCCCCCCc
Q 043025 16 SPRSPSSQPYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEK-IVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKS 94 (403)
Q Consensus 16 ~~~~~~~~~~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~-~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~ 94 (403)
.|..+.+..++.|.|+||++.|+ .|..|.+.++|++|.|....+ .|+||||||+|||++|...+|+++|||||+|.
T Consensus 20 ~~~~~~~~~~l~i~Vtd~ek~G~---~~~~~~~~~~Tnlp~Fr~~~~~~VrRRysdF~~L~~~L~~~~~~~iVPplP~k~ 96 (140)
T cd06891 20 EPERKKPKYFLRVRVTGIERNKS---KDPIIRFDVTTNLPTFRSSTYKDVRRTYEEFQKLFKYLNGANPETFVPALPLPS 96 (140)
T ss_pred CccccCCCceEEEEEeCceecCC---CCeEEEEEEeeCCcccCCCCCCceeeeHHHHHHHHHHHHHHCCCcEeCCCCCcc
Confidence 34455677889999999999886 688899999999999998887 79999999999999999999999999999999
Q ss_pred cccccCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 95 AVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 95 ~~~~~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
... ...+.+|+++||.+||+||++|+.||.|..|+.|+.||+++
T Consensus 97 ~~~-~~~~~E~~~~rr~~LqrfL~RV~~hP~L~~d~~l~~FLEsd 140 (140)
T cd06891 97 TSY-GSNNEEDARKLKANLQRWFNRVCSDPILIRDEELRFFIESD 140 (140)
T ss_pred ccC-CCCCHHHHHHHHHHHHHHHHHHhCChhhccCHHHHHHhccC
Confidence 752 26789999999999999999999999999999999999864
No 32
>cd07281 PX_SNX1 The phosphoinositide binding Phox Homology domain of Sorting Nexin 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX1 is both membrane associated and a cytosolic protein that exists as a tetramer in protein complexes. It can associate reversibly with membranes of the endosomal compartment, thereby coating these vesicles. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval
Probab=99.96 E-value=8.2e-30 Score=204.67 Aligned_cols=113 Identities=44% Similarity=0.739 Sum_probs=104.7
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcC--CccCCCCCCCccccc-----
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYK--GIFIPPLPEKSAVEK----- 98 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p--~~~iP~lP~k~~~~~----- 98 (403)
+.|.|+||+++++|+++|++|.|.++++.+.|....|.|.||||||.|||..|...|| ++++||+|+|..++.
T Consensus 1 ~~i~V~~p~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iPp~P~K~~~~~~~~~~ 80 (124)
T cd07281 1 LKVSITDPEKIGDGMNAYVVYKVTTQTSLLMFRSKHFTVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKV 80 (124)
T ss_pred CEEEEcCCeEeeCCcCCeEEEEEEEecCCCccCCCceEEEeehHHHHHHHHHHHHhCCCCCcEeCCCCCccccccchhhc
Confidence 5799999999999999999999999999999999999999999999999999999985 678999999998752
Q ss_pred ---cCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 99 ---FRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 99 ---~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
.+++++||++||.+|+.||++|++||.|++|+.|+.||+.
T Consensus 81 ~~~~~~~~~fie~Rr~~Le~FL~~l~~~p~l~~s~~~~~FL~~ 123 (124)
T cd07281 81 GKEDSSSAEFLERRRAALERYLQRIVSHPSLLQDPDVREFLEK 123 (124)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHhcCcccccChHHHHHhCC
Confidence 1358999999999999999999999999999999999975
No 33
>cd06898 PX_SNX10 The phosphoinositide binding Phox Homology domain of Sorting Nexin 10. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX10 may be involved in the regulation of endosome homeostasis. Its expression induces the formation of giant vacuoles in mammalian cells.
Probab=99.96 E-value=1.7e-29 Score=198.83 Aligned_cols=110 Identities=38% Similarity=0.592 Sum_probs=103.7
Q ss_pred EEEEcCceEeCC-CCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCC-HH
Q 043025 27 SVSVTDPVKLGN-GVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFS-AE 104 (403)
Q Consensus 27 ~v~V~~~~~~~~-~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~-~~ 104 (403)
.|.|+||.++++ +.++|++|.|.+.++.+.|....|.|+||||||.|||..|...+|++.+||||+|+.++ +++ ++
T Consensus 1 ~v~V~dP~~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~v~RRYsdF~~L~~~L~~~~~~~~~p~lP~K~~~~--~~~~~~ 78 (113)
T cd06898 1 SVEVRDPRTHKEDDWGSYTDYEIFLHTNSMCFTLKTSCVRRRYSEFVWLRNRLQKNALLIQLPSLPPKNLFG--RFNNEG 78 (113)
T ss_pred CeEEeCCcEecCCCCCCeEEEEEEEEeCCCccCcCceEEEcchHHHHHHHHHHHHHCCCCcCCCCCCCcccc--CCCCHH
Confidence 489999999986 77899999999999888887788999999999999999999999999999999999999 677 99
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 105 FIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 105 ~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
||++||++|+.||+.|+.||.|.+|+.|+.||+.
T Consensus 79 fie~Rr~~L~~fL~~i~~~p~l~~s~~l~~FL~~ 112 (113)
T cd06898 79 FIEERQQGLQDFLEKVLQTPLLLSDSRLHLFLQT 112 (113)
T ss_pred HHHHHHHHHHHHHHHHHcChhhccChHHHHhccC
Confidence 9999999999999999999999999999999975
No 34
>cd06862 PX_SNX9_18_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX9, SNX18, and similar proteins. They contain an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is loca
Probab=99.96 E-value=2.5e-29 Score=200.44 Aligned_cols=110 Identities=44% Similarity=0.795 Sum_probs=102.6
Q ss_pred EEEEcCceEeC--CCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHH
Q 043025 27 SVSVTDPVKLG--NGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAE 104 (403)
Q Consensus 27 ~v~V~~~~~~~--~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~ 104 (403)
.|+|+||++.+ +|+++|++|.|.+.+ ..|.|.||||||.|||..|...||++++||||+|..++ +++++
T Consensus 2 ~~~v~~p~~~~~~~g~~~y~~Y~I~~~~-------~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~--~~~~~ 72 (125)
T cd06862 2 HCTVTNPKKESKFKGLKSFIAYQITPTH-------TNVTVSRRYKHFDWLYERLVEKYSCIAIPPLPEKQVTG--RFEED 72 (125)
T ss_pred EEEEcCccccCCCCCCcCEEEEEEEEec-------CcEEEEEecHHHHHHHHHHHHHCCCCCCCCCCCCcccc--CCCHH
Confidence 69999999987 688999999999864 57999999999999999999999999999999999998 89999
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCChhhhcccccChhh-HHH
Q 043025 105 FIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEET-MER 145 (403)
Q Consensus 105 ~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~~-~~~ 145 (403)
||++||.+|+.||+.|++||.|++|+.|+.||+.+++. |+.
T Consensus 73 fie~Rr~~Le~fL~~I~~~p~l~~s~~~~~FL~~~~~~~~~~ 114 (125)
T cd06862 73 FIEKRRERLELWMNRLARHPVLSQSEVFRHFLTCTDEKDWKS 114 (125)
T ss_pred HHHHHHHHHHHHHHHHhcCHhhhcChHHHHHcCCccHHHHHH
Confidence 99999999999999999999999999999999987655 764
No 35
>cd06859 PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex,
Probab=99.96 E-value=2.7e-29 Score=199.99 Aligned_cols=114 Identities=54% Similarity=0.985 Sum_probs=105.4
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHH
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEF 105 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~ 105 (403)
+.|.|+||.++++|.++|++|.|.++++.++|....|.|+|||+||.+||+.|...+|+..+||||+|..++..+.+.++
T Consensus 1 ~~~~V~~p~~~~~~~~~y~~Y~I~v~~~~~~~~~~~~~v~RRyseF~~L~~~L~~~~~~~~~P~lP~k~~~~~~~~~~~~ 80 (114)
T cd06859 1 FEISVTDPVKVGDGMSAYVVYRVTTKTNLPDFKKSEFSVLRRYSDFLWLYERLVEKYPGRIVPPPPEKQAVGRFKVKFEF 80 (114)
T ss_pred CEEEEeCcceecCCccCEEEEEEEeecCCCCCCCCceEEEEChHHHHHHHHHHHHHCCCCEeCCCCCCcccCccCccHHH
Confidence 47999999999999999999999999988888888999999999999999999999999999999999999832233459
Q ss_pred HHHHHHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 106 IEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 106 i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
|++|+.+|+.||+.|+.||.|+.|+.|+.||+++
T Consensus 81 ie~Rr~~L~~fL~~i~~~p~l~~s~~~~~Fl~~~ 114 (114)
T cd06859 81 IEKRRAALERFLRRIAAHPVLRKDPDFRLFLESD 114 (114)
T ss_pred HHHHHHHHHHHHHHHhcChhhccCcHHHhhcCCC
Confidence 9999999999999999999999999999999864
No 36
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.96 E-value=1.3e-26 Score=199.08 Aligned_cols=183 Identities=19% Similarity=0.295 Sum_probs=174.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 186 SNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREA 265 (403)
Q Consensus 186 ~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~ 265 (403)
+|++|.++++|++.|+.+|..+.+++.+++++..+++.++.+||.+|+.|+.+|++.|+.+++.+|.+++.++.....++
T Consensus 2 ~d~~F~ei~e~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~~~~L~~~E~~~L~~~l~~~~~~~~~~s~~~~~l~ 81 (185)
T cd07628 2 PDKEFLEIREKSDKLDENLTKIDKIFAKVVKRQSDLSVDYADLATQFQKLGSLESGEITEPFKIFSESLSQFSTSLRVLN 81 (185)
T ss_pred CchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999986799999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHH
Q 043025 266 HQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRR 345 (403)
Q Consensus 266 ~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~ 345 (403)
+.....|.+||++|..|+.++|.+|+.|+.+..+|+.+.+.+ ++.+++.++..
T Consensus 82 ~~~~~~f~~~Lkd~~~y~~s~k~~lk~R~~kq~d~e~l~e~l---------------------------l~~~ve~a~~~ 134 (185)
T cd07628 82 KYTDENYLTSLKDLLHYILSLKNLIKLRDQKQLDYEELSDYL---------------------------LTDEVENAKET 134 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---------------------------HHHHHHHHHHH
Confidence 999999999999999999999999999999999999998766 45577888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 346 FETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLP 395 (403)
Q Consensus 346 ~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~ 395 (403)
++.+++.+..|+.+|+..|..+|+.+|.+||..||.||+++++.|+++.|
T Consensus 135 ~e~f~~~~~~E~~rF~~~k~~elk~~l~~~a~~qi~~y~~~~~~W~~~~~ 184 (185)
T cd07628 135 SDAFNKEVLKEYPNFERIKKQEIKDSLGALADGHIDFYQGLVEDWEKVEP 184 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999875
No 37
>cd06864 PX_SNX4 The phosphoinositide binding Phox Homology domain of Sorting Nexin 4. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It shows a similar domain architecture as SNX1-2, among others, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. SNX4 is implicated in the regulation of
Probab=99.96 E-value=5.7e-29 Score=200.18 Aligned_cols=114 Identities=37% Similarity=0.575 Sum_probs=101.1
Q ss_pred EEEEEcCceEeCCCC-----cceEEEEEEEEecCCCC----CCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccc
Q 043025 26 LSVSVTDPVKLGNGV-----QAYISYRVITKTNFPEY----QGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAV 96 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~-----~~~~~y~i~~~~~~~~~----~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~ 96 (403)
+.|+|++|++.++|. ++|++|.|.+.+..+.+ ....|.|+||||||.|||+.|...||++++||||+|+.+
T Consensus 1 ~~i~v~~~e~~~~~~~~~~~~~y~vY~I~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~ 80 (129)
T cd06864 1 MEITVTEAEKRTGGSAMNLKETYTVYLIETKIVEHESEEGLSKKLSSLWRRYSEFELLRNYLVVTYPYVIVPPLPEKRAM 80 (129)
T ss_pred CeeEecChhhccCCCCCCCCCCeEEEEEEEEecCCCcccccccCceEEEeCcHHHHHHHHHHHHHCCCCCCCCCCCccee
Confidence 369999999998654 39999999999876643 357899999999999999999999999999999999974
Q ss_pred c------ccCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 97 E------KFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 97 ~------~~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
. ..+++++||++||++||.||+.|++||.|++|+.|+.||+.+
T Consensus 81 ~~~~~~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~~~ 129 (129)
T cd06864 81 FMWQKLSSDTFDPDFVERRRAGLENFLLRVAGHPELCQDKIFLEFLTHE 129 (129)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHHHcChhhhcCcHHHHhcCCC
Confidence 2 126899999999999999999999999999999999999863
No 38
>cd07291 PX_SNX5 The phosphoinositide binding Phox Homology domain of Sorting Nexin 5. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting
Probab=99.96 E-value=5.8e-29 Score=194.82 Aligned_cols=111 Identities=34% Similarity=0.693 Sum_probs=97.6
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHh--hcCCccCCCCCCCccccc----
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFE--KYKGIFIPPLPEKSAVEK---- 98 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~--~~p~~~iP~lP~k~~~~~---- 98 (403)
.+.|.|+||.+++++ +.|+|.|++++|+|....+.|+|||+||.|||++|.. .|||++|||+|+|+.++.
T Consensus 2 ~l~i~vsD~~~~~d~----V~Y~V~TkTtl~~F~~~ef~V~RRysDFlwL~~~L~e~~~~~G~IIPPlPeK~~~~~~~~k 77 (141)
T cd07291 2 SLQIDIPDALSERDK----VKFTVHTKTTLPSFQSPDFSVTRQHEDFIWLHDALIETEDYAGLIIPPAPPKPDFDGPREK 77 (141)
T ss_pred ccEEEeccccccCCC----EEEEEEeCCCCccccCCccEEEeccHHHHHHHHHHhccccCCeEEECCCCCCccccchHHh
Confidence 578999999999876 7999999999999999999999999999999999996 679999999999998742
Q ss_pred --------cCC-CHHHHHHH--------------HHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 99 --------FRF-SAEFIEMR--------------RQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 99 --------~~~-~~~~i~~R--------------~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
..+ ..+|++.| +.+||+||++|++||.|+.++.|+.||+.+
T Consensus 78 ~~kl~~~~~~~~~eef~~~r~~~~~~~~~~~kk~~a~lE~fL~Ria~HP~l~~d~~f~~FLe~~ 141 (141)
T cd07291 78 MQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVQVHEVFLQRLSSHPSLSKDRNFHIFLEYD 141 (141)
T ss_pred hhhcccCcccccHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCeeccCcchhhhccCC
Confidence 022 35677755 356999999999999999999999999863
No 39
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.96 E-value=5.7e-26 Score=195.63 Aligned_cols=194 Identities=18% Similarity=0.237 Sum_probs=180.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHHHHHHH
Q 043025 185 ESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD---ALGKAFSELGMKSEALSVKL 261 (403)
Q Consensus 185 e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~---~L~~~~~~~~~~~~~~~~~~ 261 (403)
|+|++|.+.+.|+..|+.+|+.+.+.+..+++++++++.++.+||.++..|+.+|.. .|+..+..+++++..+....
T Consensus 1 d~D~~F~~~k~yl~~l~~~lk~~~~~~~~lv~~rk~la~~~~~fs~al~~L~~~E~~~~~~l~~~l~~lse~~e~i~~~~ 80 (198)
T cd07630 1 DVDEFFQKERDMNTKLSANMKEAAEKFLKIVNTEQRLANALGHLSSSLQLCVGLDEASVVALNRLCTKLSEALEEAKENI 80 (198)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHhHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999999999999999999999999854 78999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHH
Q 043025 262 QREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESED 341 (403)
Q Consensus 262 ~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~ 341 (403)
..++......|+++|++|++++.|+|++|.+|.+++++|+++...+.+++.+ |. ..++.+.+.
T Consensus 81 ~~~a~~d~~~Lg~~L~~Y~r~i~a~K~~l~~R~~~~~~~~~a~k~l~Kar~~----------k~-------~~ae~~~~~ 143 (198)
T cd07630 81 EVVAGNNENTLGLTLDLYSRYSESEKDMLFRRTCKLIEFENASKALEKAKPQ----------KK-------EQAEEAKKK 143 (198)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh----------hH-------HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988865322 22 236677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 342 STRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLP 395 (403)
Q Consensus 342 ~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~ 395 (403)
++.+|+.|+..++.||.+|+..|..+|+++|..|++.+++++++.++.|.+.+.
T Consensus 144 a~~~fe~iS~~~k~EL~rF~~~Rv~~fk~~l~~~~E~~i~~ak~~~~~~~~~~~ 197 (198)
T cd07630 144 AETEFEEISSLAKKELERFHRQRVLELQSALVCYAESQIKNAKEAAAVLTKTLE 197 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999998763
No 40
>cd07292 PX_SNX6 The phosphoinositide binding Phox Homology domain of Sorting Nexin 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transfo
Probab=99.96 E-value=1.1e-28 Score=192.86 Aligned_cols=110 Identities=28% Similarity=0.605 Sum_probs=96.6
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhh--cCCccCCCCCCCcccccc---
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEK--YKGIFIPPLPEKSAVEKF--- 99 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~--~p~~~iP~lP~k~~~~~~--- 99 (403)
.+.|.|+||.++++| +.|+|.+++++|.|....+.|+|||+||.|||++|..+ |||++|||+|+|+.++..
T Consensus 2 ~l~v~isD~~~~~d~----V~Y~V~TkTtlp~F~~~e~sV~RRysDF~wL~~~L~e~~~~~G~IVPPlP~K~~~~~~~~k 77 (141)
T cd07292 2 ALQVDISDALSERDK----VKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREK 77 (141)
T ss_pred ceEEEcccccccCCc----eEEEEEecccCcccCCCceEEEeccHhHHHHHHHHhhcccCCcEEECCCCCCccccchHHH
Confidence 578999999999987 79999999999999999999999999999999999955 899999999999987421
Q ss_pred ---------CCC-HHHHH--------------HHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 100 ---------RFS-AEFIE--------------MRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 100 ---------~~~-~~~i~--------------~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
++. ++|.. +|+.+||.||++|++||+|++|..|+.||+.
T Consensus 78 ~~klg~~~~~~~~ee~~~~~~~l~~~~~~~~kk~~a~~E~Fl~Ria~HP~l~~D~~f~~FLe~ 140 (141)
T cd07292 78 LQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEY 140 (141)
T ss_pred HHhhccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCcchhheecc
Confidence 222 33442 6668899999999999999999999999985
No 41
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=99.95 E-value=2.8e-25 Score=192.30 Aligned_cols=193 Identities=18% Similarity=0.272 Sum_probs=178.1
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 043025 182 PVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKL 261 (403)
Q Consensus 182 ~~~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~ 261 (403)
.+..+|++|.++++|++.|+.+|.++.++..+++++..+++.++.+||..|+.|+.+|+ .|+.+++.+|++++..+...
T Consensus 8 ~~~~~d~~F~~ikey~~~L~~~l~~iekv~~Rl~~r~~~l~~~~~e~g~~f~~ls~~E~-~l~~~le~~g~~~d~~~~~~ 86 (201)
T cd07622 8 RLRNPDKRFEDLKNYSDELQTNLNNLLKVRARLAERLYGVYKIHANYGRVFSEWSAIEK-EMGDGLQKAGHYMDSYAASI 86 (201)
T ss_pred cCCCCCHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHHH
Confidence 34567999999999999999999999999999999999999999999999999999995 79999999999999998887
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHH
Q 043025 262 QREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESED 341 (403)
Q Consensus 262 ~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~ 341 (403)
...+.. ...|.+||++|..|+.++|.+++.|+.+..+++.+.+.+.+++.. ++.+++.
T Consensus 87 ~~~~~~-~~~f~e~LkEy~~ya~slk~vlk~r~~~q~~~e~~~~~L~~k~~~---------------------l~~~ve~ 144 (201)
T cd07622 87 DNGLED-EELIADQLKEYLFFADSLRAVCKKHELLQYDLEKAEDALANKKQQ---------------------GEEAVKE 144 (201)
T ss_pred HHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHH
Confidence 776654 578999999999999999999999999999999998877766433 6778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043025 342 STRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKL 397 (403)
Q Consensus 342 ~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~ 397 (403)
++..++.+++.++.|+.+|+..|..||+.+|.+||..||+||+++++.|+++..++
T Consensus 145 a~~~~e~f~~~~~~E~~rF~~~K~~dlk~~l~~~A~~qi~~~~~~~~~W~~~~~~~ 200 (201)
T cd07622 145 AKDELNEFVKKALEDVERFKKQKVRDLKEILISYAKLQIKLAKKGLQTWTNIKECL 200 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999998765
No 42
>cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=99.95 E-value=7.8e-28 Score=190.65 Aligned_cols=110 Identities=26% Similarity=0.481 Sum_probs=100.6
Q ss_pred EEEEEcCceEeC-CCCcceEEEEEEEEecCCCCCCC--------ceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccc
Q 043025 26 LSVSVTDPVKLG-NGVQAYISYRVITKTNFPEYQGP--------EKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAV 96 (403)
Q Consensus 26 ~~v~V~~~~~~~-~~~~~~~~y~i~~~~~~~~~~~~--------~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~ 96 (403)
|+|.|+++.... ++.+.|++|.|.+.++.+.|... .|.|+||||||.|||+.|...||++.+||||+|+.+
T Consensus 2 ~~v~vp~~~~~~~~~~~~y~~Y~I~~~t~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~ 81 (120)
T cd06868 2 LDLTVPEYQEIRGKTSSGHVLYQIVVVTRLAAFKSAKHKEEDVVQFMVSKKYSEFEELYKKLSEKYPGTILPPLPRKALF 81 (120)
T ss_pred CceecCCceeecCCCCCCeEEEEEEEEeCchhccCcccccCCceeEEEeCCcHHHHHHHHHHHHHCCCCCCCCCCCCccc
Confidence 678999988775 56789999999999888877654 689999999999999999999999999999999988
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 97 EKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 97 ~~~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
+ ++++|++||.+|+.||++|++||.|++|+.|+.||..+
T Consensus 82 ~----~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~ 120 (120)
T cd06868 82 V----SESDIRERRAAFNDFMRFISKDEKLANCPELLEFLGVK 120 (120)
T ss_pred C----CHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHHHhcCC
Confidence 6 89999999999999999999999999999999999753
No 43
>cd07301 PX_SNX21 The phosphoinositide binding Phox Homology domain of Sorting Nexin 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development.
Probab=99.95 E-value=2.4e-27 Score=186.11 Aligned_cols=110 Identities=28% Similarity=0.440 Sum_probs=100.8
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccC-CCCCCCccccccCCCHH
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFI-PPLPEKSAVEKFRFSAE 104 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~i-P~lP~k~~~~~~~~~~~ 104 (403)
+.|.|+||.++++|+++|++|.|.+.. ...+++..|.|.||||||.|||+.|...+|+.+. ||+|+|++++ +++++
T Consensus 1 ~~~~v~~~~~~~~~~~~yv~Y~I~v~~-~~~~~~~~~~V~RRYSdF~~L~~~L~~~~~~~~~~~~~P~K~~~~--~~~~~ 77 (112)
T cd07301 1 LLFEVTDANVVQDAHSKYVLYTIYVIQ-TGQYDPSPAYISRRYSDFERLHRRLRRLFGGEMAGVSFPRKRLRK--NFTAE 77 (112)
T ss_pred CEEEECCCeEeccCCcCEEEEEEEEEe-cCCCCCCceEEEeehHhHHHHHHHHHHHCCCcCCCCCCCCCcccC--CCCHH
Confidence 468999999999999999999999975 3345677899999999999999999999998754 5999999998 89999
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 105 FIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 105 ~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
||++||.+|+.||+.|++||.|+.++.|+.||..
T Consensus 78 ~ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~l 111 (112)
T cd07301 78 TIAKRSRAFEQFLCHLHSLPELRASPAFLEFFYL 111 (112)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHhcChHHHHHhCC
Confidence 9999999999999999999999999999999964
No 44
>cd07288 PX_SNX15 The phosphoinositide binding Phox Homology domain of Sorting Nexin 15. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX15 contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. It plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of t
Probab=99.95 E-value=3.1e-27 Score=186.40 Aligned_cols=108 Identities=31% Similarity=0.455 Sum_probs=96.0
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEec--CCCCCCCceEEeeccchHHHHHHHHHhhcCCcc-----CCCCCCCccccc
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTN--FPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIF-----IPPLPEKSAVEK 98 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~--~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~-----iP~lP~k~~~~~ 98 (403)
-.+.|+||+++++| |++|.|.+.+. .+.++...+.|+||||||.|||..|...|++.+ +||+|+|.+++
T Consensus 3 ~~~~V~dp~~~~~g---yt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~P~K~~~g- 78 (118)
T cd07288 3 RFYSVTDPRTHPKG---YTEYKVTAQFISKKQPEDVKEVVVWKRYSDLKKLHGELAYTHRNLFRRQEEFPPFPRAQVFG- 78 (118)
T ss_pred eEEEecCCcCcCCC---cEEEEEEEEecCCCCCccceEEEEECCchHHHHHHHHHHHhcccccccCCccCCCCCceeec-
Confidence 36899999999876 99999998742 223344689999999999999999999887754 99999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 99 FRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 99 ~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
+++++||++||.+|+.||++|++||.|++|+.|+.||+.
T Consensus 79 -~f~~~fIeeRR~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 117 (118)
T cd07288 79 -RFEAAVIEERRNAAEAMLLFTVNIPALYNSPQLKEFFRD 117 (118)
T ss_pred -cCCHHHHHHHHHHHHHHHHHHhCChhhcCChHHHHHHhc
Confidence 899999999999999999999999999999999999975
No 45
>KOG2527 consensus Sorting nexin SNX11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=9.1e-28 Score=183.69 Aligned_cols=117 Identities=39% Similarity=0.720 Sum_probs=108.7
Q ss_pred CCCcEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCC
Q 043025 22 SQPYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRF 101 (403)
Q Consensus 22 ~~~~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~ 101 (403)
|..++.|.|.+|...++|.+.||.|.|...|++|.|......|+||||||+|||..|...-.-+.+||||.|.++. .+
T Consensus 14 p~nfLeI~V~nPrt~~~~~~~ytdYEI~~rTN~p~F~~k~S~VRRRYsdFewlr~~Ler~s~kvvvP~LPgK~~~~--~~ 91 (144)
T KOG2527|consen 14 PENFLEIDVINPRTHGDGKNRYTDYEIRCRTNSPSFKKKESCVRRRYSDFEWLRKRLERESGKVVVPELPGKALFR--QL 91 (144)
T ss_pred ccceEEEEeeCCcccccccccceeEEEEEecCchhhhhhhHHHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHh--cC
Confidence 4569999999999999999999999999999999999999999999999999999999988888999999999987 32
Q ss_pred -CHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccCh
Q 043025 102 -SAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADE 140 (403)
Q Consensus 102 -~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~ 140 (403)
..+|||+||++|+.||+.|+.||.+.++..++.||.+.-
T Consensus 92 ~fre~IEeRrqgLe~fl~kVaghpL~q~~~~Lh~Flq~~~ 131 (144)
T KOG2527|consen 92 PFREFIEERRQGLEVFLRKVAGHPLLQNERCLHLFLQSEL 131 (144)
T ss_pred chHHHHHHHHHHHHHHHHHHhCchhhhccHHHHHHHHhhh
Confidence 339999999999999999999999999999999998764
No 46
>cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX41 and SNX42 (also called Atg20p) form dimers with SNX4, and are required in protein recycling from the sorting endosome (post-Golgi endosome) back
Probab=99.94 E-value=5e-27 Score=185.49 Aligned_cols=103 Identities=34% Similarity=0.565 Sum_probs=93.8
Q ss_pred EEEcCceEeCCC-CcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccc-------c
Q 043025 28 VSVTDPVKLGNG-VQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEK-------F 99 (403)
Q Consensus 28 v~V~~~~~~~~~-~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~-------~ 99 (403)
|.|+|+.+.++| .++|++|.|.+.+ |.|+||||||.|||..|...||++++||||+|..+.. .
T Consensus 2 ~~i~~~~~~~~~~~~~y~~Y~I~~~~---------~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~ 72 (112)
T cd06867 2 IQIVDAGKSSEGGSGSYIVYVIRLGG---------SEVKRRYSEFESLRKNLTRLYPTLIIPPIPEKHSLKDYAKKPSKA 72 (112)
T ss_pred cEEccCccccCCCccCEEEEEEEeee---------EEEEeccHHHHHHHHHHHHHCcCCCcCCCCCcchhhhhccccccc
Confidence 689999999876 5799999998752 9999999999999999999999999999999997642 1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 100 RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 100 ~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
+++++||++||++|+.||+.|+.||.|+.|+.|+.||+++
T Consensus 73 ~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~ 112 (112)
T cd06867 73 KNDAKIIERRKRMLQRFLNRCLQHPILRNDIVFQKFLDPN 112 (112)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhcChhhccCcHHHHhcCCC
Confidence 5799999999999999999999999999999999999864
No 47
>cd06892 PX_SNX5_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Members of this subfamily include SNX5, SNX6, and similar proteins. They contain a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to other sorting nexins including SNX1-2. The PX-BAR structural unit helps determine the specific membrane-targeting of som
Probab=99.94 E-value=5.2e-27 Score=186.70 Aligned_cols=110 Identities=36% Similarity=0.670 Sum_probs=99.0
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhh--cCCccCCCCCCCccccc----
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEK--YKGIFIPPLPEKSAVEK---- 98 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~--~p~~~iP~lP~k~~~~~---- 98 (403)
.+.|.|+|+..++ .++.|+|.+++++|+|....+.|+|||+||.|||++|..+ |||++|||+|+|..+..
T Consensus 2 ~~~~~i~da~~~~----~~V~Y~V~TkT~l~~f~~~e~sV~RR~sDF~wL~~~L~~~~~~~g~IVPP~P~K~~~~~~~~k 77 (141)
T cd06892 2 SLQVDISDALSER----DKVKFTVHTKTTLPTFQKPEFSVTRQHEEFVWLHDTLVENEDYAGLIIPPAPPKPDFDASREK 77 (141)
T ss_pred ceeeecccccccC----CeEEEEEEeccCCccccCCeeEEEeccHHHHHHHHHHhhccCCCeEEECCCCCCcccccccce
Confidence 5788999988776 4789999999999999999999999999999999999976 89999999999986510
Q ss_pred --------cCCCHHHHHHHHHHH---------------HHHHHHHhcCccccCChhhhccccc
Q 043025 99 --------FRFSAEFIEMRRQGL---------------DLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 99 --------~~~~~~~i~~R~~~L---------------~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
..++.+|+++|+..| +.||++|+.||.|+++..|+.||+.
T Consensus 78 ~~klg~~d~~~~~ef~~~r~~~Le~~y~~~~~k~v~~~e~FL~RiA~HP~L~~~~~l~~FLe~ 140 (141)
T cd06892 78 LQKLGEGEGSMTKEEFEKMKQELEAEYLAIFKKTVAMHEVFLRRLASHPVLRNDANFRVFLEY 140 (141)
T ss_pred eeecccCccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCeeecCHhHHhhhcC
Confidence 147899999999999 5899999999999999999999985
No 48
>cd07280 PX_YPT35 The phosphoinositide binding Phox Homology domain of the fungal protein YPT35. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of YPT35 proteins from the fungal subkingdom Dikarya. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of YPT35 binds to phosphatidylinositol 3-phosphate (PI3P). It also serves as a protein interaction domain, binding to members of the Yip1p protein family, which localize to the ER and Golgi. YPT35 is mainly associated with endosomes and together with Yip1p proteins, may be involved in a specific function in the endocytic pathway.
Probab=99.94 E-value=1.5e-26 Score=185.00 Aligned_cols=110 Identities=30% Similarity=0.511 Sum_probs=100.1
Q ss_pred EEEEcCceEeCCC--CcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCc---cCCCCCCCcccc--cc
Q 043025 27 SVSVTDPVKLGNG--VQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGI---FIPPLPEKSAVE--KF 99 (403)
Q Consensus 27 ~v~V~~~~~~~~~--~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~---~iP~lP~k~~~~--~~ 99 (403)
+|.|+++..++++ .++|++|.|.+.+..| .+..|.|+||||||.|||..|...||+. .+||||+|+.++ ..
T Consensus 4 ~i~i~~~~~~~~~~~~~~yv~Y~I~v~~~~~--~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~~P~lP~K~~~~~~~~ 81 (120)
T cd07280 4 DVNVGDYTIVGGDTGGGAYVVWKITIETKDL--IGSSIVAYKRYSEFVQLREALLDEFPRHKRNEIPQLPPKVPWYDSRV 81 (120)
T ss_pred EEEcCCCeEECCCCCCCCEEEEEEEEEeCCC--CCCcEEEEeeHHHHHHHHHHHHHHCcccccCcCCCCCCCcccccccc
Confidence 7999999999755 6899999999988654 3578999999999999999999999997 899999999987 23
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 100 RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 100 ~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
+++++||++|+++|+.||+.|+.||.|+.|+.|+.||.+
T Consensus 82 ~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~ 120 (120)
T cd07280 82 NLNKAWLEKRRRGLQYFLNCVLLNPVFGGSPVVKEFLLP 120 (120)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhCCHhhccChHHHHhhCC
Confidence 689999999999999999999999999999999999974
No 49
>cd07287 PX_RPK118_like The phosphoinositide binding Phox Homology domain of RPK118-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to human RPK118, which contains an N-terminal PX domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. It also binds the antioxidant peroxiredoxin-3 (PRDX3) and may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Members of this subfamily also show similarity to sorting nexin 15 (SNX15), which contains PX and MIT domains but does not contain a kinase doma
Probab=99.94 E-value=2.4e-26 Score=180.98 Aligned_cols=107 Identities=31% Similarity=0.474 Sum_probs=93.6
Q ss_pred EEEEcCceEeCCCCcceEEEEEEEEecCCCC--CCCceEEeeccchHHHHHHHHHhhcCC-----ccCCCCCCCcccccc
Q 043025 27 SVSVTDPVKLGNGVQAYISYRVITKTNFPEY--QGPEKIVIRRYSDFVWLRDRLFEKYKG-----IFIPPLPEKSAVEKF 99 (403)
Q Consensus 27 ~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~--~~~~~~v~RRysdF~~L~~~L~~~~p~-----~~iP~lP~k~~~~~~ 99 (403)
..+|+||+++++| |++|.|.+++..... +...|.|+||||||.|||+.|...||+ .++||+|+|..++
T Consensus 4 ~~~V~dp~~~~~g---yt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~p~k~~~g-- 78 (118)
T cd07287 4 FYTVTDPRRHPKG---YTVYKVTARIVSRKNPEDVQEIVVWKRYSDFKKLHKDLWQIHKNLCRQSELFPPFAKAKVFG-- 78 (118)
T ss_pred eEEecCCeEcCCC---eEEEEEEEEecCCCCcccceeEEEeCCchHHHHHHHHHHHhccccccCCcccCCCCCceeec--
Confidence 4679999999866 999999987532111 125799999999999999999998874 4689999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 100 RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 100 ~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
+++++|||+||.+|+.||++|++||.|++|+.|+.||..
T Consensus 79 ~~d~~fIe~RR~~Le~fL~~i~~~p~l~~s~~~~~Fl~~ 117 (118)
T cd07287 79 RFDESVIEERRQCAEDLLQFSANIPALYNSSQLEDFFKG 117 (118)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcCccccCChHHHHHhcC
Confidence 899999999999999999999999999999999999975
No 50
>cd06866 PX_SNX8_Mvp1p_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles.
Probab=99.94 E-value=2.8e-26 Score=178.07 Aligned_cols=96 Identities=41% Similarity=0.671 Sum_probs=90.1
Q ss_pred ceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHHHHHHHHH
Q 043025 33 PVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQG 112 (403)
Q Consensus 33 ~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~i~~R~~~ 112 (403)
|++.|.+. +|++|.|.+.. ..|.|.||||||.|||..|...||++.+||||+|..++ +++++|+++||.+
T Consensus 9 ~~~~g~~~-~y~~Y~i~~~~-------~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~~--~~~~~~ie~Rr~~ 78 (105)
T cd06866 9 PEKKGLFL-KHVEYEVSSKR-------FKSTVYRRYSDFVWLHEYLLKRYPYRMVPALPPKRIGG--SADREFLEARRRG 78 (105)
T ss_pred ccccCccc-CCEEEEEEEec-------CCEEEEEEhHHHHHHHHHHHHHCCCCcCCCCCCCcccc--CCCHHHHHHHHHH
Confidence 67777665 99999999864 57999999999999999999999999999999999998 8999999999999
Q ss_pred HHHHHHHHhcCccccCChhhhccccc
Q 043025 113 LDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 113 L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
|+.||+.|+.||.|++|+.|+.||+.
T Consensus 79 Le~fL~~l~~~p~l~~s~~l~~FL~~ 104 (105)
T cd06866 79 LSRFLNLVARHPVLSEDELVRTFLTE 104 (105)
T ss_pred HHHHHHHHhcChhhccChHHHhhcCC
Confidence 99999999999999999999999986
No 51
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.93 E-value=1.2e-23 Score=180.73 Aligned_cols=182 Identities=19% Similarity=0.276 Sum_probs=166.0
Q ss_pred CChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHHH
Q 043025 186 SNPEYEKLKHYIFELENHLA-EAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD-ALGKAFSELGMKSEALSVKLQR 263 (403)
Q Consensus 186 ~d~~f~~~~~~i~~le~~l~-~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~-~L~~~~~~~~~~~~~~~~~~~~ 263 (403)
+|++|.+++.+++.++..|. ++.++..+++++..+++.++.+||..|+.|+..|+. .|+.+++.+|++++..+.....
T Consensus 2 ~d~~F~~~e~~~~~~~~~L~~~l~kv~~Ri~k~~~~l~~dl~elG~~fn~ls~~E~~~~L~~~le~~g~a~D~~~~~~~~ 81 (187)
T cd07629 2 PDDEFTDIEAETKKYEQLLHGGMEKVNRRITKRLGDLAEDMADLGGRFNAFSLEEQKSELAEALEKVGQAVDSTYLATEA 81 (187)
T ss_pred cchHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999995 899999999999999999999999999999999965 5999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHH
Q 043025 264 EAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDST 343 (403)
Q Consensus 264 ~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~ 343 (403)
+.......|.+||++|+.|+.+++.+|+.|+.+..+++.+.+.+ + + .+..+.
T Consensus 82 l~~~l~~~f~EpL~E~~~y~~s~k~vlk~R~~K~~Q~e~l~~~L------~---------------------e-~~~~~~ 133 (187)
T cd07629 82 LVGSLYYNINEPLSESAQFAGVVRELLKYRKLKHVQYEMTKDSL------L---------------------E-SALVAA 133 (187)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H---------------------H-HHHHHH
Confidence 99999999999999999999999999999999999999887776 0 1 112344
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 344 RRFETIV-RLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLP 395 (403)
Q Consensus 344 ~~~~~i~-~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~ 395 (403)
.++..+. ..+..|+.||+++|..||+.+|.+||..|+.|++++++.|+++..
T Consensus 134 ~~~~~~~~~~~~~el~rF~~ek~~dl~~~l~~~a~~~~~~a~~~~~~W~~~~~ 186 (187)
T cd07629 134 SDDLVISSTIKQKDLPRFQREREADLREILKNYSKYHKDWAKQNLEAWKEAKA 186 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5667774 779999999999999999999999999999999999999999864
No 52
>cd07300 PX_SNX20 The phosphoinositide binding Phox Homology domain of Sorting Nexin 20. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. The PX dom
Probab=99.93 E-value=8.5e-26 Score=177.52 Aligned_cols=111 Identities=22% Similarity=0.370 Sum_probs=99.2
Q ss_pred EEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCcc-CCCCCCCccccccCCCHHH
Q 043025 27 SVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIF-IPPLPEKSAVEKFRFSAEF 105 (403)
Q Consensus 27 ~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~-iP~lP~k~~~~~~~~~~~~ 105 (403)
-+.|+....+.+++++|++|.|.+... ..|+...|.|.||||||.|||..|...+++++ .||||+|+.++ +++++|
T Consensus 2 ~~~i~~~~~~~~~~~~yv~Y~i~~~~~-g~~~~~~~~v~RRYSdF~~L~~~L~~~~~~~~~~~~lP~K~~~~--~~~~~~ 78 (114)
T cd07300 2 LFEIPSARIIEQTISKHVVYQIIVIQT-GSFDCNKVVIERRYSDFLKLHQELLSDFSEELEDVVFPKKKLTG--NFSEEI 78 (114)
T ss_pred eEEecCceeeccCCcceEEEEEEEEEe-cCccCceEEEEeccHhHHHHHHHHHHHccccCCCCCCCCCcccC--CCCHHH
Confidence 377888888877788999999987433 22667789999999999999999999998865 78999999999 899999
Q ss_pred HHHHHHHHHHHHHHHhcCccccCChhhhcccccCh
Q 043025 106 IEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADE 140 (403)
Q Consensus 106 i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~ 140 (403)
|++||.+|+.||+.|++||.|+.++.|+.||+.++
T Consensus 79 ie~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~~ 113 (114)
T cd07300 79 IAERRVALRDYLTLLYSLRFVRRSQAFQDFLTHPE 113 (114)
T ss_pred HHHHHHHHHHHHHHHhcCHhhhcChHHHHHhCCcc
Confidence 99999999999999999999999999999999874
No 53
>cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also cal
Probab=99.93 E-value=8.9e-26 Score=178.37 Aligned_cols=111 Identities=25% Similarity=0.430 Sum_probs=100.3
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCcc-CCCCCCCccccccCCCHH
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIF-IPPLPEKSAVEKFRFSAE 104 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~-iP~lP~k~~~~~~~~~~~ 104 (403)
+.+.|.++..+++|.++|++|.|.+.+.. .++...|.|+||||||.|||+.|...||+.+ .||||+|..++ +++++
T Consensus 1 ~~~~i~~~~~~~~~~~~yv~Y~I~v~~~~-~~~~~~~~v~RRYsdF~~L~~~L~~~~p~~~~~~~lP~K~~~~--~~~~~ 77 (112)
T cd07279 1 LKFEIVSARTVKEGEKKYVVYQLAVVQTG-DPDTQPAFIERRYSDFLKLYKALRKQHPQLMAKVSFPRKVLMG--NFSSE 77 (112)
T ss_pred CeEEeccCeEEcCCCeeEEEEEEEEEECC-CCCCceEEEecchHhHHHHHHHHHHHCCCcCCCCCCCCCeecc--cCCHH
Confidence 35778899999988899999999998653 3345679999999999999999999999986 57999999999 89999
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 105 FIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 105 ~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
||++|+.+|+.||+.|++||.|++|+.|+.||+.+
T Consensus 78 ~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~ 112 (112)
T cd07279 78 LIAERSRAFEQFLGHILSIPNLRDSKAFLDFLQGP 112 (112)
T ss_pred HHHHHHHHHHHHHHHHhCCHhhhcChHHHHHhCCC
Confidence 99999999999999999999999999999999864
No 54
>cd06877 PX_SNX14 The phosphoinositide binding Phox Homology domain of Sorting Nexin 14. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX14 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. It is expressed in the embryonic nervous system of mice, and is co-expressed in the motoneurons and the anterior pituary with Islet-1. SNX14 shows a similar domain architecture as SNX13, containing an N
Probab=99.93 E-value=2.4e-25 Score=176.59 Aligned_cols=111 Identities=25% Similarity=0.320 Sum_probs=96.9
Q ss_pred EEEEcCceEeCC--CCcceEEEEEEEEecC---CCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCC
Q 043025 27 SVSVTDPVKLGN--GVQAYISYRVITKTNF---PEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRF 101 (403)
Q Consensus 27 ~v~V~~~~~~~~--~~~~~~~y~i~~~~~~---~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~ 101 (403)
.|+|+..+...+ +.+.|++|.|.++... .+.....|.|.||||||.+||..|...||++.+||||+|..++ ++
T Consensus 4 ~i~I~~~~~~~~~~~~~~~~~Y~I~V~~~~~~~~~~~~~~w~V~RRYsdF~~L~~~L~~~~~~~~~~~lP~K~~~~--~~ 81 (119)
T cd06877 4 RVSIPYVEMRRDPSNGERIYVFCIEVERNDRRAKGHEPQHWSVLRRYNEFYVLESKLTEFHGEFPDAPLPSRRIFG--PK 81 (119)
T ss_pred eEEeeeEEEeecCCCCcEEEEEEEEEEEccccCCCCCcCceEEEechHHHHHHHHHHHHHCCCCCCCCCcCCcccC--CC
Confidence 566666555533 6689999999998631 2344568999999999999999999999999999999999999 79
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 102 SAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 102 ~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
+++||++||.+||.||+.|+.||.++.|+.|+.||+++
T Consensus 82 ~~~~ie~Rr~~Le~fL~~ll~~~~l~~s~~~~~FL~~~ 119 (119)
T cd06877 82 SYEFLESKREIFEEFLQKLLQKPELRGSELLYDFLSPN 119 (119)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCcccccCHHHHHhCCCC
Confidence 99999999999999999999999999999999999864
No 55
>cd06893 PX_SNX19 The phosphoinositide binding Phox Homology domain of Sorting Nexin 19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX19 contains an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. These domains are also found in SNX13 and SNX14, which also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNX19 interacts with IA-2, a major autoantigen found
Probab=99.93 E-value=1.7e-25 Score=179.96 Aligned_cols=109 Identities=30% Similarity=0.412 Sum_probs=91.8
Q ss_pred EEEcCceEeCCCCcceEEEEEEEEecC-----------CCCCCCceEEeeccchHHHHHHHHHhhcC--CccCCCCCCCc
Q 043025 28 VSVTDPVKLGNGVQAYISYRVITKTNF-----------PEYQGPEKIVIRRYSDFVWLRDRLFEKYK--GIFIPPLPEKS 94 (403)
Q Consensus 28 v~V~~~~~~~~~~~~~~~y~i~~~~~~-----------~~~~~~~~~v~RRysdF~~L~~~L~~~~p--~~~iP~lP~k~ 94 (403)
=.|+++++.|+|+++|++|+|.+.++. |.|....|.|.||||||.|||..|....+ .+..+++|+|.
T Consensus 6 ~~i~~~e~~g~g~~~y~~Y~V~~~t~~~~~~~~~~~~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~~~~~~~~~~~P~k~ 85 (132)
T cd06893 6 KTITAKEYKGTGTHPYTLYTVQYETILDVQSEQNPNAASEQPLATHTVNRRFREFLTLQTRLEENPKFRKIMNVKGPPKR 85 (132)
T ss_pred ceeecchhcCCCCCCeEEEEEEeccCcchhcccccccccccccCeEEEECchHHHHHHHHHHHHccCcccccccCCCCcc
Confidence 368899999999999999999998754 45666899999999999999999997532 22234455554
Q ss_pred c----ccccCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 95 A----VEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 95 ~----~~~~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
. ++ +++++||++||.+||.||++|++||.|+.|+.|+.||..
T Consensus 86 ~p~lp~g--~~d~~fie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 131 (132)
T cd06893 86 LFDLPFG--NMDKDKIEARRGLLETFLRQLCSIPEISNSEEVQEFLAY 131 (132)
T ss_pred CCCCCCC--CCCHHHHHHHHHHHHHHHHHHHcCHhhhcCHHHHHHHcc
Confidence 3 45 789999999999999999999999999999999999974
No 56
>cd06872 PX_SNX19_like_plant The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized plant proteins containing an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some sorting nexins (SNXs). This is the same domain architecture found in SNX19. SNX13 and SNX14 also contain these three domains but also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction dom
Probab=99.93 E-value=3.2e-25 Score=172.38 Aligned_cols=106 Identities=26% Similarity=0.380 Sum_probs=95.5
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHH
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEF 105 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~ 105 (403)
+.|.|++++.+++|.++|++|.|.+.++ .+..|.|.||||||.+||+.|.. +|+. .||||+|+++++ +++++|
T Consensus 1 ~~~~v~~~~~~~~~~~~y~vY~I~v~~~----~~~~w~v~RRYsdF~~L~~~L~~-~~~~-~~~lP~K~~~~~-~~~~~f 73 (107)
T cd06872 1 LSCRVLGAEIVKSGSKSFAVYSVAVTDN----ENETWVVKRRFRNFETLHRRLKE-VPKY-NLELPPKRFLSS-SLDGAF 73 (107)
T ss_pred CeeEEeeeEEEecCCccEEEEEEEEEEC----CCceEEEEehHHHHHHHHHHHHh-ccCC-CCCCCCccccCC-CCCHHH
Confidence 4689999999999999999999999864 34689999999999999999986 6765 679999999841 689999
Q ss_pred HHHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 106 IEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 106 i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
|++|+.+||.||+.|+++|.++.|+.|+.||..
T Consensus 74 ie~Rr~~Le~yL~~l~~~p~i~~s~~~~~FL~~ 106 (107)
T cd06872 74 IEERCKLLDKYLKDLLVIEKVAESHEVWSFLSA 106 (107)
T ss_pred HHHHHHHHHHHHHHHhcChhhhcCHHHHHHhcc
Confidence 999999999999999999999999999999963
No 57
>cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily cont
Probab=99.93 E-value=3.6e-25 Score=175.72 Aligned_cols=108 Identities=31% Similarity=0.461 Sum_probs=95.0
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCC--CCCceEEeeccchHHHHHHHHHhhcCC----ccCCCCCCCcccccc
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEY--QGPEKIVIRRYSDFVWLRDRLFEKYKG----IFIPPLPEKSAVEKF 99 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~--~~~~~~v~RRysdF~~L~~~L~~~~p~----~~iP~lP~k~~~~~~ 99 (403)
..++|+||++++ ++|++|.|.+.+....+ +...|.|+||||||.+||+.|...||+ ..+||||+|+.++
T Consensus 3 ~~~~V~d~~~~~---~~~t~Y~I~~~~~~~~~~~~~~~~~V~rRYsdF~~L~~~L~~~~~~~~~~~~~P~lP~K~~~g-- 77 (117)
T cd06881 3 RSFTVTDTRRHK---KGYTEYKITSKVFSRSVPEDVSEVVVWKRYSDFKKLHRELSRLHKQLYLSGSFPPFPKGKYFG-- 77 (117)
T ss_pred EEEEecCcceec---CceEEEEEEEEecCCCCccccceEEEECcHHHHHHHHHHHHHHhhhccccCcCCCCCCCcccC--
Confidence 468999999986 46999999998632211 235799999999999999999999864 3579999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 100 RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 100 ~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
+++++||++||.+|+.||+.|++||.|+.++.|+.||+.
T Consensus 78 ~~~~~~IeeRr~~Le~fL~~i~~~p~l~~s~~~~~Fl~~ 116 (117)
T cd06881 78 RFDAAVIEERRQAILELLDFVGNHPALYQSSAFQQFFEE 116 (117)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCHhhhcChHHHHHhcc
Confidence 899999999999999999999999999999999999974
No 58
>cd06873 PX_SNX13 The phosphoinositide binding Phox Homology domain of Sorting Nexin 13. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX13, also called RGS-PX1, contains an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. It specifically binds to the stimulatory subunit of the heterotrimeric G protein G(alpha)s, serving as its GTPase activating protein, throug
Probab=99.92 E-value=7.5e-25 Score=174.71 Aligned_cols=111 Identities=24% Similarity=0.367 Sum_probs=101.1
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHH
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEF 105 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~ 105 (403)
+.+.|+++++.++|.+.|++|.|.+....+......|.|.||||||.+||+.|...+|...+|+||+|..++ ++++++
T Consensus 5 ~~~~i~~~~~~~~~~~~y~~Y~I~v~~~~~~~~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~lP~K~~~~--~~~~~~ 82 (120)
T cd06873 5 LTAVIINTGIVKEHGKTYAVYAISVTRIYPNGQEESWHVYRRYSDFHDLHMRLKEKFPNLSKLSFPGKKTFN--NLDRAF 82 (120)
T ss_pred EEEEEeccEEEccCCceEEEEEEEEEEecCCCCccceEEEeehHHHHHHHHHHHHHCcCCCCCCCCCCcccC--CCCHHH
Confidence 678999999999999999999999987555445578999999999999999999999999999999999998 899999
Q ss_pred HHHHHHHHHHHHHHHhcCccccCCh----hhhccccc
Q 043025 106 IEMRRQGLDLFVNRIASHPELQQSE----DLKTFLQA 138 (403)
Q Consensus 106 i~~R~~~L~~fl~~~~~~~~l~~~~----~~~~FL~~ 138 (403)
|++|+.+|+.||+.|+++|.|++++ .+..||++
T Consensus 83 ie~Rr~~Le~fL~~ll~~~~l~~~~~~~~~l~~FL~~ 119 (120)
T cd06873 83 LEKRRKMLNQYLQSLLNPEVLDANPGLQEIVLDFLEP 119 (120)
T ss_pred HHHHHHHHHHHHHHHhCCHhhccCHHHHHHHHHHcCC
Confidence 9999999999999999999999994 66777764
No 59
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.92 E-value=5.6e-22 Score=172.41 Aligned_cols=202 Identities=14% Similarity=0.192 Sum_probs=185.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAH 266 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~ 266 (403)
|....-+.+||..++.++..|+..+..++++...|++...+|+.++..++.+|++.|..+++.+++++..+.+....+++
T Consensus 3 ~~~~k~i~~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E~~~L~~~L~~lae~~~~i~d~~q~qv~ 82 (211)
T cd07598 3 DNQTKFIQERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADTENPSLKQGLKNFAECLAALQDYRQAEVE 82 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccc-CcchHHHHHHHHHHHHHHHHHHHHH
Q 043025 267 QLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLT-RSDKVGEAEIEYKELKAESEDSTRR 345 (403)
Q Consensus 267 ~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~-~~~ki~~l~~~i~~~~~~~~~~~~~ 345 (403)
.+...|.+||++|...|.++++.++. |..+.+++.+++.+++++++. ++++. +|.+++.+++.++.+
T Consensus 83 ~l~~~v~epLk~Y~~l~k~~k~~~K~-------~~~ar~~~~~~~~~leklk~~~~~d~~-----~i~eaE~~l~~a~~d 150 (211)
T cd07598 83 RLEAKVVQPLALYGTICKHARDDLKN-------TFTARNKELKQLKQLEKLRQKNPSDRQ-----IISQAESELQKASVD 150 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCCchhh-----HHHHHHHHHHHHHHH
Confidence 99999999999999999999998732 777777777788888998753 34443 677889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043025 346 FETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 346 ~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~ 400 (403)
|+.++..|..|+.+|+..|..||+.+|.+|+..++.+|.++++.|......+.++
T Consensus 151 ~~r~s~~l~ee~~rFe~~k~~d~K~~l~~fv~~~m~~~~kale~~~~~~~~~~~~ 205 (211)
T cd07598 151 ANRSTKELEEQMDNFEKQKIRDIKTIFSDFVLIEMLFHAKALEVYTAAYQDIQNI 205 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999888765
No 60
>cd06886 PX_SNX27 The phosphoinositide binding Phox Homology domain of Sorting Nexin 27. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX27 contains an N-terminal PDZ domain followed by a PX domain and a Ras-Associated (RA) domain. It binds G protein-gated potassium (Kir3) channels, which play a role in neuronal excitability control, through its PDZ domain. SNX27 downregulates Kir3 channels by promoting their movement in the endosome, reducing surface
Probab=99.92 E-value=1.3e-24 Score=168.81 Aligned_cols=103 Identities=21% Similarity=0.466 Sum_probs=94.0
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHH
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAE 104 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~ 104 (403)
.+.|.|++.....++.++|++|.|.+. ..|.|.||||||.+||..|...+|++.+||||+|..++ ++++
T Consensus 3 ~~~i~Ip~~~~~~~~~~~yvvY~I~~~--------~~~~v~rRyseF~~L~~~L~~~~~~~~~p~lP~K~~~~---~~~~ 71 (106)
T cd06886 3 SVPISIPDYKHVEQNGEKFVVYNIYMA--------GRQLCSRRYREFANLHQNLKKEFPDFQFPKLPGKWPFS---LSEQ 71 (106)
T ss_pred cceEecCCcceEcCCCCcEEEEEEEEc--------CCEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCCcCC---CCHH
Confidence 468899998777666679999999874 26899999999999999999999999999999999885 6899
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 105 FIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 105 ~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
+|++||.+|+.||+.|++||.|++|+.|+.||+.
T Consensus 72 ~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~ 105 (106)
T cd06886 72 QLDARRRGLEQYLEKVCSIRVIGESDIMQDFLSD 105 (106)
T ss_pred HHHHHHHHHHHHHHHHhcCcccccCHHHHHHhcc
Confidence 9999999999999999999999999999999974
No 61
>cd07276 PX_SNX16 The phosphoinositide binding Phox Homology domain of Sorting Nexin 16. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX16 contains a central PX domain followed by a coiled-coil region. SNX16 is localized in early and recycling endosomes through the binding of its PX domain to phosphatidylinositol-3-phosphate (PI3P). It plays a role in epidermal growth factor (EGF) signaling by regulating EGF receptor membrane trafficking.
Probab=99.91 E-value=6e-24 Score=167.23 Aligned_cols=107 Identities=28% Similarity=0.542 Sum_probs=94.6
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHH
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEF 105 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~ 105 (403)
+.|.|.+.+...++ ++|++|.|.+.... +..|.|.||||||.+||..|...+|+ .+||||+|++++. +++++|
T Consensus 4 ~~~~i~~~~~~~~~-~~~~vY~I~v~~~~----~~~~~v~RRYsdF~~L~~~L~~~~~~-~~~~lP~K~~~~~-~~~~~f 76 (110)
T cd07276 4 IRPPILGYEVMEER-ARFTVYKIRVENKV----GDSWFVFRRYTDFVRLNDKLKQMFPG-FRLSLPPKRWFKD-NFDPDF 76 (110)
T ss_pred ccceeeeEEEeecC-CCeEEEEEEEEECC----CCEEEEEEehHHHHHHHHHHHHHCCC-CCCCCCCcceecc-cCCHHH
Confidence 37778887766653 68999999998742 46899999999999999999999998 6899999998862 589999
Q ss_pred HHHHHHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 106 IEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 106 i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
|++||.+|+.||+.|++||.|++++.++.||..+
T Consensus 77 ie~Rr~~Lq~fL~~ll~~~~l~~s~~~~~FL~~~ 110 (110)
T cd07276 77 LEERQLGLQAFVNNIMAHKDIAKCKLVREFFCLD 110 (110)
T ss_pred HHHHHHHHHHHHHHHhcCHhhhcChHHHHHhccC
Confidence 9999999999999999999999999999999864
No 62
>cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction.
Probab=99.90 E-value=1.5e-23 Score=165.22 Aligned_cols=106 Identities=26% Similarity=0.337 Sum_probs=95.1
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHH
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEF 105 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~ 105 (403)
++|+|++.... .++|++|.|.+... +..|.|.||||||.+||+.|...+|+..+||||+|..++..++++++
T Consensus 1 ~~v~ip~~~~~---~~~~~~Y~I~v~~~-----~~~~~v~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~~~~~~~~~~ 72 (108)
T cd06897 1 LEISIPTTSVS---PKPYTVYNIQVRLP-----LRSYTVSRRYSEFVALHKQLESEVGIEPPYPLPPKSWFLSTSSNPKL 72 (108)
T ss_pred CeEEcCCeEEc---CCCeEEEEEEEEcC-----CceEEEEcchHHHHHHHHHHHHHcCCCCCCCCCCcCEecccCCCHHH
Confidence 36788887666 35799999999863 57899999999999999999999999999999999998744689999
Q ss_pred HHHHHHHHHHHHHHHhcCc--cccCChhhhcccccC
Q 043025 106 IEMRRQGLDLFVNRIASHP--ELQQSEDLKTFLQAD 139 (403)
Q Consensus 106 i~~R~~~L~~fl~~~~~~~--~l~~~~~~~~FL~~~ 139 (403)
|++|+.+|+.||+.|++|| .+++|+.|+.||+.+
T Consensus 73 ie~Rr~~Le~yL~~l~~~~~~~l~~s~~~~~FL~~~ 108 (108)
T cd06897 73 VEERRVGLEAFLRALLNDEDSRWRNSPAVKEFLNLP 108 (108)
T ss_pred HHHHHHHHHHHHHHHHcCCccchhcCHHHHHHhCCC
Confidence 9999999999999999999 999999999999753
No 63
>cd06870 PX_CISK The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Cytokine-independent survival kinase (CISK), also called Serum- and Glucocorticoid-induced Kinase 3 (SGK3), plays a role in cell growth and survival. It is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. CISK/SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. N-terminal to a catalytic kinase domain, CISK contains a PX domain which binds highly phosphorylated PIs, directs membrane localization, and regulates the enzyme's activity.
Probab=99.90 E-value=1.7e-23 Score=164.32 Aligned_cols=105 Identities=30% Similarity=0.524 Sum_probs=89.7
Q ss_pred EEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHHHH
Q 043025 28 VSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIE 107 (403)
Q Consensus 28 v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~i~ 107 (403)
|.|.......++.++|++|.|.+.. .+..|.|+||||||.+||+.|...||+.. ||||+|+.++. +++++||+
T Consensus 5 ~~i~~~~~~~~~~~~~~~Y~I~v~~-----~~~~~~v~RRYseF~~L~~~L~~~~~~~~-~~lP~K~~~~~-~~~~~~ie 77 (109)
T cd06870 5 VSIPSSDEDREKKKRFTVYKVVVSV-----GRSSWFVFRRYAEFDKLYESLKKQFPASN-LKIPGKRLFGN-NFDPDFIK 77 (109)
T ss_pred eeeccceeeccCCCCeEEEEEEEEE-----CCeEEEEEeehHHHHHHHHHHHHHCcccC-cCCCCCccccc-CCCHHHHH
Confidence 3344333334445799999999876 35789999999999999999999999984 48999999873 68999999
Q ss_pred HHHHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 108 MRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 108 ~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
+||.+|+.||+.|++||.|++++.|+.||+.+
T Consensus 78 ~Rr~~Le~fL~~ll~~p~l~~s~~~~~FL~~~ 109 (109)
T cd06870 78 QRRAGLDEFIQRLVSDPKLLNHPDVRAFLQMD 109 (109)
T ss_pred HHHHHHHHHHHHHhCCHhhhcChHHHHHhCcC
Confidence 99999999999999999999999999999863
No 64
>cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p40phox contains an N-terminal PX domain, a central SH3 domain that binds p47phox, and a C-terminal PB1 domain that interacts with p67phox. It is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. The PX domain is a phospholipid-binding module involved in the membrane targeting of proteins. The p40phox
Probab=99.90 E-value=3e-23 Score=165.39 Aligned_cols=110 Identities=27% Similarity=0.443 Sum_probs=97.3
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCC--------ccCCCCCCCccc
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG--------IFIPPLPEKSAV 96 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~--------~~iP~lP~k~~~ 96 (403)
.|.++|+|+++. .|.++|++|.|.+... ++..|.|+|||+||.+||..|...||. +++|+||+|..+
T Consensus 3 ~i~~~I~~~~~~-~~~~~y~vY~I~v~~~----~~~~~~V~RRYseF~~L~~~L~~~fp~~~~~~~~~~~lP~lP~k~~~ 77 (123)
T cd06882 3 AVSATIADIEEK-RGFTNYYVFVIEVKTK----GGSKYLIYRRYRQFFALQSKLEERFGPEAGSSAYDCTLPTLPGKIYV 77 (123)
T ss_pred cEEEEEeeeeEE-eCCCCEEEEEEEEEEc----CCCEEEEEEEHHHHHHHHHHHHHhCCcccccCCCCCccCCCCCCeec
Confidence 478999998876 6678999999999863 346799999999999999999999995 589999999999
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhcCcc-ccCChhhhcccccChhh
Q 043025 97 EKFRFSAEFIEMRRQGLDLFVNRIASHPE-LQQSEDLKTFLQADEET 142 (403)
Q Consensus 97 ~~~~~~~~~i~~R~~~L~~fl~~~~~~~~-l~~~~~~~~FL~~~~~~ 142 (403)
+ +.+ +|+++||.+|+.||+.|+++|. ++.|+.|+.||.....+
T Consensus 78 ~--~~~-~~~e~Rr~~Le~yl~~Ll~~p~~i~~~~~v~~Fl~~~~~d 121 (123)
T cd06882 78 G--RKA-EIAERRIPLLNRYMKELLSLPVWVLMDEDVRLFFYQTESD 121 (123)
T ss_pred C--ccH-HHHHHHHHHHHHHHHHHHcCCHHhcCCHHHHHHhCCCccc
Confidence 8 544 9999999999999999999985 99999999999987654
No 65
>cd06885 PX_SNX17_31 The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some me
Probab=99.89 E-value=3e-23 Score=160.82 Aligned_cols=100 Identities=23% Similarity=0.455 Sum_probs=90.0
Q ss_pred EEEcCceEeCC-CCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHHH
Q 043025 28 VSVTDPVKLGN-GVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFI 106 (403)
Q Consensus 28 v~V~~~~~~~~-~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~i 106 (403)
|.|+++....+ +.++|++|.|.+. +.+.|.||||||.+||..|.+.+|++.+||||+|+.++ ++.++|
T Consensus 2 v~I~~~~~~~~~~~~~y~~Y~I~v~--------~~~~~~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~~---~~~~~i 70 (104)
T cd06885 2 FSIPDTQELSDEGGSTYVAYNIHIN--------GVLHCSVRYSQLHGLNEQLKKEFGNRKLPPFPPKKLLP---LTPAQL 70 (104)
T ss_pred CccCCcceeccCCCCcEEEEEEEEC--------CcEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCcccc---CCHHHH
Confidence 56677766654 6789999999874 35889999999999999999999999999999999986 788999
Q ss_pred HHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 107 EMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 107 ~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
++||.+|+.||+.|+.||.++.|+.|+.||..
T Consensus 71 e~Rr~~Le~yL~~l~~~~~l~~s~~~~~FL~~ 102 (104)
T cd06885 71 EERRLQLEKYLQAVVQDPRIANSDIFNSFLLN 102 (104)
T ss_pred HHHHHHHHHHHHHHhcChhhccCHHHHHHHHh
Confidence 99999999999999999999999999999974
No 66
>cd07277 PX_RUN The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized proteins containing an N-terminal RUN domain and a C-terminal PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. The RUN domain is found in GTPases in the Rap and Rab families and may play a role in Ras-like signaling pathways.
Probab=99.89 E-value=9.5e-23 Score=160.75 Aligned_cols=107 Identities=27% Similarity=0.407 Sum_probs=94.9
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHH
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEF 105 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~ 105 (403)
+.|+|+.....|+|.+.|++|.|.+..+ +..|.|.||||||.+||..|...+|+...|+||+|+.++ +++.+|
T Consensus 1 ~~v~IPs~~~~g~~~~~y~vY~I~v~~~-----~~~w~V~RRYseF~~L~~~L~~~~~~~~~~~~P~Kk~~g--~~~~~~ 73 (118)
T cd07277 1 INVWIPSVFLRGKGSDAHHVYQVYIRIR-----DDEWNVYRRYSEFYELHKKLKKKFPVVRSFDFPPKKAIG--NKDAKF 73 (118)
T ss_pred CEEEcCcEEEecCCCCCEEEEEEEEEEC-----CCEEEEEecHHHHHHHHHHHHHHCCCCCCCCCCCCCccC--CCCHHH
Confidence 3577777777788889999999999863 578999999999999999999999998899999999999 899999
Q ss_pred HHHHHHHHHHHHHHHhcCccccCChhhhcccccCh
Q 043025 106 IEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADE 140 (403)
Q Consensus 106 i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~ 140 (403)
+++||.+||.||+.|+.| .+..++.|..||+-..
T Consensus 74 ie~Rr~~Le~yL~~ll~~-~~~~~~~~~~~~~~~~ 107 (118)
T cd07277 74 VEERRKRLQVYLRRVVNT-LIQTSPELTACPSKET 107 (118)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHhCchhhcCCCHHH
Confidence 999999999999999997 6677777887777543
No 67
>cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. The function of SNX25 is not yet known. It has been found in exosomes from human malignant pleural effusions. SNX25 shows the same domain architecture as SNX13 and SNX14, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some S
Probab=99.89 E-value=1.6e-22 Score=162.36 Aligned_cols=113 Identities=19% Similarity=0.197 Sum_probs=96.6
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecC-----CCCCCCceEEeeccchHHHHHHHHHhhcCCc--cCCCCCCCcccc
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNF-----PEYQGPEKIVIRRYSDFVWLRDRLFEKYKGI--FIPPLPEKSAVE 97 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~-----~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~--~iP~lP~k~~~~ 97 (403)
...|.|++...++++.+.|++|.|.+.... ++-....|.|.|||+||.+||..|...||+. ..+|+|+|+.++
T Consensus 8 ~w~~~I~~~~~~~~~~~~~~vY~I~V~~~~~~~~~~~~~~~~W~V~RRYsdF~~Lh~~Lk~~~~~~~~~~lP~ppKk~~~ 87 (127)
T cd06878 8 KWRANIQSAEVTVEDDKEVPLYVIVVHVSEVGLNEDESISSGWVVTRKLSEFHDLHRKLKECSSWLKKVELPSLSKKWFK 87 (127)
T ss_pred cceEEEeeeEEEcCCCeEEEEEEEEEEEecCCCCCCCCCcceEEEEEeHHHHHHHHHHHHHHCCCccccCCCCCCccccc
Confidence 357888888877777789999999998642 2223457999999999999999999999975 344567777887
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 98 KFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 98 ~~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
+++++|+++||.+|+.||+.|+.+|.|+.|+.|..||++.
T Consensus 88 --~~~~~fle~Rr~~Le~YLq~ll~~~~l~~s~~l~~FLsp~ 127 (127)
T cd06878 88 --SIDKKFLDKSKNQLQKYLQFILEDETLCQSEALYSFLSPS 127 (127)
T ss_pred --cCCHHHHHHHHHHHHHHHHHHhCChhhcCCHHHHHHcCCC
Confidence 7899999999999999999999999999999999999863
No 68
>cd06876 PX_MDM1p The phosphoinositide binding Phox Homology domain of yeast MDM1p. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Yeast MDM1p is a filament-like protein localized in punctate structures distributed throughout the cytoplasm. It plays an important role in nuclear and mitochondrial transmission to daughter buds. Members of this subfamily show similar domain architectures as some sorting nexins (SNXs). Some members are similar to SNX19 in that they contain an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. Others are similar to SNX13 and SNX14, which also harbor these three domains as well as a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regul
Probab=99.89 E-value=1.5e-22 Score=164.79 Aligned_cols=109 Identities=23% Similarity=0.416 Sum_probs=97.2
Q ss_pred EEEEcCceEeCC-CCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCC--CH
Q 043025 27 SVSVTDPVKLGN-GVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRF--SA 103 (403)
Q Consensus 27 ~v~V~~~~~~~~-~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~--~~ 103 (403)
.|.|.+.....+ +.++|++|.|.+....++.....|.|.||||||.+||..|...||+..+||||+|+.++ .. +.
T Consensus 21 ~i~I~~~~~~~~~~~k~~~~Y~I~v~~~~~~~~~~~w~V~RRYseF~~Lh~~L~~~~~~~~~p~~P~K~~~~--~~~~~~ 98 (133)
T cd06876 21 RVSIQSYISDVEEEGKEFVVYLIEVQRLNNDDQSSGWVVARRYSEFLELHKYLKKRYPGVLKLDFPQKRKIS--LKYSKT 98 (133)
T ss_pred eEEEeeEEeeecCCCceEEEEEEEEEEcCCCCCcccEEEEeEhHHHHHHHHHHHHHCcCCCCCCCCcccccc--CccCCH
Confidence 688888877653 35799999999987544333468999999999999999999999999999999999998 44 89
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccCChhhhcccc
Q 043025 104 EFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQ 137 (403)
Q Consensus 104 ~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~ 137 (403)
+++++||.+|+.||+.|+.+|.+++++.|+.||+
T Consensus 99 ~~ie~Rr~~Le~yL~~Ll~~~~l~~s~~l~~FLs 132 (133)
T cd06876 99 LLVEERRKALEKYLQELLKIPEVCEDEEFRKFLS 132 (133)
T ss_pred HHHHHHHHHHHHHHHHHHcCccccCChHHHHhhc
Confidence 9999999999999999999999999999999996
No 69
>cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=99.89 E-value=7.8e-23 Score=162.52 Aligned_cols=95 Identities=25% Similarity=0.378 Sum_probs=87.3
Q ss_pred ceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHh
Q 043025 42 AYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIA 121 (403)
Q Consensus 42 ~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~i~~R~~~L~~fl~~~~ 121 (403)
.-+.|.|.+...-|+.....|.|.||||||.+||..|...+|++.+||+|+|+.++ +++++|||+||.+||.||++|+
T Consensus 43 ~~~~y~VqV~v~~~~~~~~~w~V~RRYSDF~~L~~~L~~~~p~~~lPplPpK~~l~--~~~~~fiEeRR~gLE~fLq~Ll 120 (138)
T cd06879 43 VDKFYRVQVGVQSPEGITTMRGVLRRFNDFLKLHTDLKKLFPKKKLPAAPPKGLLR--MKNRALLEERRHSLEEWMGKLL 120 (138)
T ss_pred ceEEEEEEEeecCCCCcceeeeeecCchHHHHHHHHHHHHCCCCcCCCCCCccccc--CCCHHHHHHHHHHHHHHHHHHH
Confidence 45689999887655545568999999999999999999999999999999999999 8999999999999999999999
Q ss_pred cCccccCChhhhccccc
Q 043025 122 SHPELQQSEDLKTFLQA 138 (403)
Q Consensus 122 ~~~~l~~~~~~~~FL~~ 138 (403)
+||.++.++.|+.||+.
T Consensus 121 ~~p~l~~s~~v~~FLel 137 (138)
T cd06879 121 SDIDLSRSVPVASFLEL 137 (138)
T ss_pred cCccccCCHHHHHHhCC
Confidence 99999999999999985
No 70
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.89 E-value=2.1e-20 Score=168.20 Aligned_cols=211 Identities=20% Similarity=0.238 Sum_probs=196.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------------hhHHHHHHHHHHH
Q 043025 186 SNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEG------------DALGKAFSELGMK 253 (403)
Q Consensus 186 ~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~------------~~L~~~~~~~~~~ 253 (403)
....|...+++|..+...+.++...+++++++.+.++.++.+||..++.|+..+. ..++.++..+|.+
T Consensus 20 ~~~~~~~~r~~I~~l~~~~~~l~~l~er~~kR~~~~A~d~~~f~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~s~~ 99 (246)
T cd07597 20 FQEQWANSRERIRRLLESWTKLRVLAERYEKRSQQQAADRAEFARLLNSLGELTARLYPWAGDSDTWGDINEGLSSLSKH 99 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccCCCccHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999999999998774 6789999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHhccc---CcchHHHHH
Q 043025 254 SEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERAN-AFRQQCELAETMKLKEINLDKLMLT---RSDKVGEAE 329 (403)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~-~~~~~~~~~~~l~~k~~~l~kl~~~---~~~ki~~l~ 329 (403)
+..++....+++..+...+.|+|+.|++++.|+++++.+|++ +..+++.+.+.+..++.++.++++. .+.-+++++
T Consensus 100 ~~~~s~~~~~~a~~~~~~vlE~Lk~~~d~l~S~r~lf~R~~k~~~~~i~~l~~ri~~~~~kl~~l~~~~~~~~~e~ekl~ 179 (246)
T cd07597 100 FQLLSDLSEDEARAEEDGVLEKLKLQLDLLVSLRDLFERHEKLSLNNIQRLLKRIELNKKKLESLRAKPDVKGAEVDKLE 179 (246)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHH
Confidence 999999999999999999999999999999999999988884 5679999999999999999999854 456788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043025 330 IEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKL 397 (403)
Q Consensus 330 ~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~ 397 (403)
+.|.+.++.+....++..+|..|+..|+..|+.... .+..+|.+|+..++.+|.++.++|+.+.+.+
T Consensus 180 ~~i~~d~~~i~~q~~R~~fi~~Cv~~E~~~fq~~~~-~~~~~l~~~~~~q~~~~~~l~~~W~~L~~~l 246 (246)
T cd07597 180 ASIIKDKESIANQLNRSWFIRECILEETQLFQETQF-LLTSILQEFVKDEIQYHSELANVWERLVPKL 246 (246)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 999999999999999999999999999999999876 9999999999999999999999999998753
No 71
>cd06875 PX_IRAS The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Imidazoline Receptor Antisera-Selected (IRAS), also called nischarin, contains an N-terminal PX domain, leucine rich repeats, and a predicted coiled coil domain. The PX domain of IRAS binds to phosphatidylinositol-3-phosphate in membranes. Together with the coiled coil domain, it is essential for the localization of IRAS to endosomes. IRAS has been shown to interact with integrin and inhibit cell migration. Its interaction with alpha5 integrin causes a redistribution of the receptor from the cell surface to endosomal structures, suggesting that IRAS may function as a sorting nexin (SNX) which regulates the endosomal trafficking of integrin. SNXs make up the largest group a
Probab=99.88 E-value=2.4e-22 Score=158.83 Aligned_cols=106 Identities=25% Similarity=0.394 Sum_probs=95.2
Q ss_pred CcEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCH
Q 043025 24 PYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSA 103 (403)
Q Consensus 24 ~~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~ 103 (403)
|...|.|++.+.. ++|++|.|.+.. .+..|.|.||||||.+||..|...+ ++..|+||+|+.++ ++++
T Consensus 2 ~~~~v~I~~~~~~----~~~~~Y~I~V~~-----~~~~w~V~RRYseF~~L~~~L~~~~-~~~~~~~P~Kk~~~--~~~~ 69 (116)
T cd06875 2 PETKIRIPSAETV----EGYTVYIIEVKV-----GSVEWTVKHRYSDFAELHDKLVAEH-KVDKDLLPPKKLIG--NKSP 69 (116)
T ss_pred CCEEEEECCEEEE----CCEEEEEEEEEE-----CCeEEEEEecHHHHHHHHHHHHHHc-CcccCcCCCccccC--CCCH
Confidence 3457888877654 479999999976 3468999999999999999999999 67789999999999 8999
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccCChhhhcccccChh
Q 043025 104 EFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEE 141 (403)
Q Consensus 104 ~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~ 141 (403)
++|++||.+|+.||+.|++++.++.++.+..||..++.
T Consensus 70 ~~ie~Rr~~Le~yL~~ll~~~~~~~s~~l~~FL~~~~~ 107 (116)
T cd06875 70 SFVEKRRKELEIYLQTLLSFFQKTMPRELAHFLDFHKY 107 (116)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHhCCCce
Confidence 99999999999999999999999999999999998864
No 72
>cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known.
Probab=99.87 E-value=1.5e-21 Score=153.08 Aligned_cols=103 Identities=25% Similarity=0.412 Sum_probs=91.1
Q ss_pred EEEEEcCceEeCCC-CcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHH
Q 043025 26 LSVSVTDPVKLGNG-VQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAE 104 (403)
Q Consensus 26 ~~v~V~~~~~~~~~-~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~ 104 (403)
+.|+|+.+....++ .++|++|.|.+..+ +..|.|.||||||.+||..|...++ +|+||+|.. + +++++
T Consensus 1 ~~V~Ip~~~~~~~~~~~~y~~Y~I~v~~~-----~~~~~v~RRYseF~~Lh~~L~~~~~---~p~~P~K~~-~--~~~~~ 69 (110)
T cd06880 1 IEVSIPSYRLEVDESEKPYTVFTIEVLVN-----GRRHTVEKRYSEFHALHKKLKKSIK---TPDFPPKRV-R--NWNPK 69 (110)
T ss_pred CEEEeCcEEEeeCCCCCCeEEEEEEEEEC-----CeEEEEEccHHHHHHHHHHHHHHCC---CCCCCCCCc-c--CCCHH
Confidence 47888888877654 47999999999863 4589999999999999999999987 899999997 4 58999
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCChhhhcccccChh
Q 043025 105 FIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEE 141 (403)
Q Consensus 105 ~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~ 141 (403)
+|++||.+||.||+.|+.+|. .+..|..||+.+..
T Consensus 70 ~ie~Rr~~Le~yL~~ll~~~~--~s~~l~~FL~~~~~ 104 (110)
T cd06880 70 VLEQRRQGLEAYLQGLLKINE--LPKQLLDFLGVRHF 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHcCcc--ccHHHHHHhCCCCC
Confidence 999999999999999999998 68999999998763
No 73
>cd06871 PX_MONaKA The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. MONaKA (Modulator of Na,K-ATPase) binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities. It modulates brain Na,K-ATPase and may be involved in regulating electrical excitability and synaptic transmission. MONaKA contains an N-terminal PX domain and a C-terminal catalytic kinase domain. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=99.86 E-value=1.8e-21 Score=154.87 Aligned_cols=106 Identities=30% Similarity=0.450 Sum_probs=88.3
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHH
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEF 105 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~ 105 (403)
+.+.|.+.. +.++|++|.|.+... .+....|.|+||||||.+||+.|... +. .||||+|+.++ ++++++
T Consensus 8 ~~~~i~~~~----~~~~~t~Y~I~v~~~--~~~~~~w~V~RRYsdF~~Lh~~L~~~--~~-~~plP~K~~~g--~~~~~~ 76 (120)
T cd06871 8 LTCVIEASQ----NIQSHTEYIIRVQRG--PSPENSWQVIRRYNDFDLLNASLQIS--GI-SLPLPPKKLIG--NMDREF 76 (120)
T ss_pred eEEEEecCC----CccCcEEEEEEEEEC--CcCCceeEEEeeHHHHHHHHHHHHHc--CC-CCCCCCccccC--CCCHHH
Confidence 455555433 346799999999763 23456899999999999999999863 33 45899999999 899999
Q ss_pred HHHHHHHHHHHHHHHhcCccccCChhhhcccccChhh
Q 043025 106 IEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEET 142 (403)
Q Consensus 106 i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~~ 142 (403)
|++||.+|+.||+.|++||.+++++.++.||+.+...
T Consensus 77 ie~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~~~~ 113 (120)
T cd06871 77 IAERQQGLQNYLNVILMNPILASCLPVKKFLDPNNYS 113 (120)
T ss_pred HHHHHHHHHHHHHHHHcChhhccCHHHHHhcCcccCC
Confidence 9999999999999999999999999999999877644
No 74
>cd06869 PX_UP2_fungi The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=99.86 E-value=3.9e-21 Score=151.81 Aligned_cols=90 Identities=28% Similarity=0.377 Sum_probs=81.0
Q ss_pred CcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHHHHHHHHHHHHHHHH
Q 043025 40 VQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNR 119 (403)
Q Consensus 40 ~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~i~~R~~~L~~fl~~ 119 (403)
...|++|.|.+..+..+ ...|.|.||||||.|||..|...||++.+||||+|.. .++|+||.+|+.||+.
T Consensus 30 ~~~~~~Y~I~V~~~~~~--~~~~~V~RRYsdF~~L~~~L~~~fp~~~lP~lP~K~~--------~~~E~Rr~~Le~yL~~ 99 (119)
T cd06869 30 SKHHYEFIIRVRREGEE--YRTIYVARRYSDFKKLHHDLKKEFPGKKLPKLPHKDK--------LPREKLRLSLRQYLRS 99 (119)
T ss_pred CCceEEEEEEEEECCCC--CCceEEEeeHHHHHHHHHHHHHHCcCCCCCCCcCCch--------hHHHHHHHHHHHHHHH
Confidence 46899999999985321 3589999999999999999999999999999999986 4578899999999999
Q ss_pred HhcCccccCChhhhcccccC
Q 043025 120 IASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 120 ~~~~~~l~~~~~~~~FL~~~ 139 (403)
|+.+|.|++|+.|..||..+
T Consensus 100 Ll~~p~l~~s~~~~~FL~~~ 119 (119)
T cd06869 100 LLKDPEVAHSSILQEFLTSD 119 (119)
T ss_pred HhcChhhhcChHHHHhhCCC
Confidence 99999999999999999864
No 75
>smart00312 PX PhoX homologous domain, present in p47phox and p40phox. Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform.
Probab=99.84 E-value=9.9e-21 Score=148.83 Aligned_cols=102 Identities=40% Similarity=0.659 Sum_probs=87.5
Q ss_pred cCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccc-cCCCHHHHHHH
Q 043025 31 TDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEK-FRFSAEFIEMR 109 (403)
Q Consensus 31 ~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~-~~~~~~~i~~R 109 (403)
.++.+.+++...|++|.|.+.. ....|.|.|||+||.+||+.|...+|+..+|+||+|..++. .+.+++++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~v~~~~-----~~~~~~v~RRysdF~~L~~~L~~~~~~~~lP~lP~k~~~~~~~~~~~~~i~~R 76 (105)
T smart00312 2 LEPEKIGDGKHYYYVIEIETKT-----GLEEWTVSRRYSDFLELHSKLKKHFPRRILPPLPPKKLFGRLNNFSEEFIEKR 76 (105)
T ss_pred CCceecCCCceEEEEEEEEECC-----CCceEEEEEEHHHHHHHHHHHHHHCcCCCCCCCCCchhcccCCcCCHHHHHHH
Confidence 4556666666677777776653 23689999999999999999999999999999999998862 25789999999
Q ss_pred HHHHHHHHHHHhcCccccC-Chhhhcccc
Q 043025 110 RQGLDLFVNRIASHPELQQ-SEDLKTFLQ 137 (403)
Q Consensus 110 ~~~L~~fl~~~~~~~~l~~-~~~~~~FL~ 137 (403)
+.+|+.||+.|+.+|.++. |+.|..||+
T Consensus 77 ~~~L~~yL~~l~~~~~~~~~s~~~~~Fl~ 105 (105)
T smart00312 77 RRGLERYLQSLLNHPELINESEVVLSFLE 105 (105)
T ss_pred HHHHHHHHHHHHcCHhhhccChHHHHhcC
Confidence 9999999999999999999 999999985
No 76
>cd06874 PX_KIF16B_SNX23 The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. KIF16B, also called sorting nexin 23 (SNX23), is a family-3 kinesin which harbors an N-terminal kinesin motor domain containing ATP and microtubule binding sites, a ForkHead Associated (FHA) domain, and a C-terminal PX domain. The PX domain of KIF16B binds to phosphatidylinositol-3-phosphate (PI3P) in early endosomes and plays a role in the transport of early endosomes to the plus end of microtubules. By regulating early endosome plus end motility, KIF16B modulates the balance between recycling and degradation of receptors. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endoso
Probab=99.84 E-value=2.1e-20 Score=149.19 Aligned_cols=100 Identities=21% Similarity=0.267 Sum_probs=89.3
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHH
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEF 105 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~ 105 (403)
++|+|+++...++|.++|++|.|.+.. .+..|.|.||||||.+||..|...+|....||||+|+.++ +.++++
T Consensus 1 ~~i~Ip~~~~~~~~~~~y~vY~I~v~~-----~~~~w~V~RRYseF~~Lh~~L~~~~p~~~~~~fP~Kk~~g--~~~~~~ 73 (127)
T cd06874 1 IKITIPRYVLRGQGKDEHFEFEVKITV-----LDETWTVFRRYSRFRELHKTMKLKYPEVAALEFPPKKLFG--NKSERV 73 (127)
T ss_pred CEEEECCeEEecCCCCcEEEEEEEEEE-----CCcEEEEEeeHHHHHHHHHHHHHHcCCCccCCCCCceecC--CCCHHH
Confidence 478999998888888899999999876 3467999999999999999999999998899999999999 789999
Q ss_pred HHHHHHHHHHHHHHHhcC-ccccCChhh
Q 043025 106 IEMRRQGLDLFVNRIASH-PELQQSEDL 132 (403)
Q Consensus 106 i~~R~~~L~~fl~~~~~~-~~l~~~~~~ 132 (403)
+++||.+|+.||+.|++. +.+..++.+
T Consensus 74 ie~Rr~~Le~yL~~Ll~~~~~~~~~~~~ 101 (127)
T cd06874 74 AKERRRQLETYLRNFFSVCLKLPACPLY 101 (127)
T ss_pred HHHHHHHHHHHHHHHHHhchhccCCccc
Confidence 999999999999999974 677666644
No 77
>cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting.
Probab=99.83 E-value=4.2e-20 Score=145.46 Aligned_cols=106 Identities=42% Similarity=0.704 Sum_probs=97.3
Q ss_pred EEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHHH
Q 043025 27 SVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFI 106 (403)
Q Consensus 27 ~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~i 106 (403)
.|.|.++....++.+.|++|.|.+.... +..|.|+|||+||.+||..|...+|+..+|+||+|..++ ..+.+++
T Consensus 1 ~i~I~~~~~~~~~~~~~~~Y~i~v~~~~----~~~~~v~rrysdF~~L~~~L~~~~~~~~~p~lP~k~~~~--~~~~~~~ 74 (106)
T cd06093 1 SVSIPDYEKVKDGGKKYVVYIIEVTTQG----GEEWTVYRRYSDFEELHEKLKKKFPGVILPPLPPKKLFG--NLDPEFI 74 (106)
T ss_pred CEEeCCceEEcCCCCCEEEEEEEEEECC----CCeEEEEeehHHHHHHHHHHHHHCCCCccCCCCCCcccc--cCCHHHH
Confidence 3788999988777789999999998742 468999999999999999999999999999999999998 6799999
Q ss_pred HHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 107 EMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 107 ~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
++|+..|+.||+.|+.+|.+..++.+..||+.
T Consensus 75 ~~R~~~L~~yl~~l~~~~~~~~~~~~~~Fl~~ 106 (106)
T cd06093 75 EERRKQLEQYLQSLLNHPELRNSEELKEFLEL 106 (106)
T ss_pred HHHHHHHHHHHHHHhcCcccccChHHHHHhCC
Confidence 99999999999999999999999999999863
No 78
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=99.83 E-value=5.1e-18 Score=145.58 Aligned_cols=189 Identities=18% Similarity=0.263 Sum_probs=159.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh-------hhhhhHHHHHHHHHHHHHHH
Q 043025 186 SNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRE-LGESLSDFGKAAKLLGA-------CEGDALGKAFSELGMKSEAL 257 (403)
Q Consensus 186 ~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~-l~~~~~~l~~~~~~l~~-------~e~~~L~~~~~~~~~~~~~~ 257 (403)
.+...+.++.++..|+..++.|..++....++... .-..+..+|.+|..|+. .++..|+.++..+|++++.+
T Consensus 2 ve~~~d~f~~f~~~md~svk~l~~~~~~~~kk~~~~~kkeyqk~G~af~~L~~af~~d~~~~~t~Ls~Al~~~g~~~e~I 81 (199)
T cd07626 2 VEQQVDAFKKFVKSMDDSVKNLINIAQEQAKKHQGPYKKEYQKIGQAFTSLGTAFELDETPTSVPLTQAIKHTGQAYEEI 81 (199)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHH
Confidence 36778899999999999999999998888887633 33566666666666663 23568999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHH
Q 043025 258 SVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKA 337 (403)
Q Consensus 258 ~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~ 337 (403)
+.+..+|+......+.|.|++|.+.+.+++++|..|..+++.+..+++... ++|+ ...
T Consensus 82 g~l~~eQa~~D~~~l~E~L~eY~gll~~~pdi~~~~k~al~K~kE~~r~~~-------------egk~---------~~~ 139 (199)
T cd07626 82 GELFAEQPKHDLIPLLDGLHEYKGLLSTFPDIIGVHKGAVQKVKECERLVD-------------EGKM---------SSA 139 (199)
T ss_pred HHHHHHhhHhhHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHH-------------hccc---------cHH
Confidence 999999999999999999999999999999999999998777666543211 1222 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 338 ESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 338 ~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~ 396 (403)
+++.++.+++.|+..++.|+.+|+.+|..||+.++.+|.+.||.||++++.-++..+.+
T Consensus 140 e~~ev~~r~d~IS~~~~aE~~~F~~eRv~Dfk~~m~~yLe~qI~fyqqI~~kl~~a~~~ 198 (199)
T cd07626 140 ELEEVKRRTDVISYALLAEINHFHRERVRDFKSMMRNYLQQQIEFYQKIAAKLEEALAM 198 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55568899999999999999999999999999999999999999999999999988764
No 79
>cd06883 PX_PI3K_C2 The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They are also involved in the regulation of clathrin-mediated membrane trafficking as well as ATP-dependent priming of neurosecretory granule exocytosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and d
Probab=99.83 E-value=4.5e-20 Score=144.31 Aligned_cols=106 Identities=21% Similarity=0.327 Sum_probs=91.0
Q ss_pred EEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHHHH
Q 043025 28 VSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIE 107 (403)
Q Consensus 28 v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~i~ 107 (403)
|+|-+.++.-+. ++|++|.|.++... .+..|.|.|||+||.+||..|...||++.+|+||+|..++. ..+.++++
T Consensus 2 ~~i~~~~~~~~~-~~~~vY~I~V~~~~---~~~~~~V~RRYseF~~Lh~~L~~~fp~~~lp~lP~k~~~~~-~~~~~~~e 76 (109)
T cd06883 2 VSVFGFQKRYSP-EKYYIYVVKVTREN---QTEPSFVFRTFEEFQELHNKLSLLFPSLKLPSFPARVVLGR-SHIKQVAE 76 (109)
T ss_pred cEEEEEEEEecC-CceEEEEEEEEECC---CCCeEEEEecHHHHHHHHHHHHHHCCCCcCCCCCCCcccCc-cchhHHHH
Confidence 677777776443 47999999998742 13569999999999999999999999999999999999872 24578999
Q ss_pred HHHHHHHHHHHHHhcCc-cccCChhhhccccc
Q 043025 108 MRRQGLDLFVNRIASHP-ELQQSEDLKTFLQA 138 (403)
Q Consensus 108 ~R~~~L~~fl~~~~~~~-~l~~~~~~~~FL~~ 138 (403)
+|+.+|+.||+.|+++| .+++|+.|..||.+
T Consensus 77 ~R~~~Le~YL~~Ll~~~~~i~~s~~v~~F~~~ 108 (109)
T cd06883 77 RRKIELNSYLKSLFNASPEVAESDLVYTFFHP 108 (109)
T ss_pred HHHHHHHHHHHHHHcCCHHHhcCHHHHHhcCC
Confidence 99999999999999985 99999999999975
No 80
>PF00787 PX: PX domain; InterPro: IPR001683 The PX (phox) domain [] occurs in a variety of eukaryotic proteins and have been implicated in highly diverse functions such as cell signalling, vesicular trafficking, protein sorting and lipid modification [, , ]. PX domains are important phosphoinositide-binding modules that have varying lipid-binding specificities []. The PX domain is approximately 120 residues long [], and folds into a three-stranded beta-sheet followed by three -helices and a proline-rich region that immediately preceeds a membrane-interaction loop and spans approximately eight hydrophobic and polar residues. The PX domain of p47phox binds to the SH3 domain in the same protein []. Phosphorylation of p47(phox), a cytoplasmic activator of the microbicidal phagocyte oxidase (phox), elicits interaction of p47(phox) with phoinositides. The protein phosphorylation-driven conformational change of p47(phox) enables its PX domain to bind to phosphoinositides, the interaction of which plays a crucial role in recruitment of p47(phox) from the cytoplasm to membranes and subsequent activation of the phagocyte oxidase. The lipid-binding activity of this protein is normally suppressed by intramolecular interaction of the PX domain with the C-terminal Src homology 3 (SH3) domain []. The PX domain is conserved from yeast to human. A recent multiple alignment of representative PX domain sequences can be found in [], although showing relatively little sequence conservation, their structure appears to be highly conserved. Although phosphatidylinositol-3-phosphate (PtdIns(3)P) is the primary target of PX domains, binding to phosphatidic acid, phosphatidylinositol-3,4-bisphosphate (PtdIns(3,4)P2), phosphatidylinositol-3,5-bisphosphate (PtdIns(3,5)P2), phosphatidylinositol-4,5-bisphosphate (PtdIns(4,5)P2), and phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,5)P3) has been reported as well. The PX-domain is also a protein-protein interaction domain [].; GO: 0005515 protein binding, 0035091 phosphatidylinositol binding, 0007154 cell communication; PDB: 2DYB_A 1H6H_A 2WWE_A 1XTN_B 1XTE_A 2CZO_A 2V6V_B 2V14_A 2I4K_A 3IQ2_A ....
Probab=99.81 E-value=1.6e-19 Score=143.91 Aligned_cols=110 Identities=37% Similarity=0.602 Sum_probs=93.9
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccc-cCCCH
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEK-FRFSA 103 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~-~~~~~ 103 (403)
.+.|.|.++.+.+++...|+.|.|.... ....|.|+|||+||.+||..|...+|+..+|++|++..++. ...+.
T Consensus 3 ~~~v~v~~~~~~~~~~~~~~~~~i~~~~-----~~~~~~v~rry~dF~~L~~~L~~~~~~~~~p~~P~~~~~~~~~~~~~ 77 (113)
T PF00787_consen 3 IIQVSVVDPETSGNKKKTYYIYQIELQD-----GKESWSVYRRYSDFYELHRKLKKRFPSRKLPPFPPKQWFSNSRNLDP 77 (113)
T ss_dssp EEEEEEEEEEEESSSSEEEEEEEEEETT-----SSSEEEEEEEHHHHHHHHHHHHHHHTTSGSTSSSTSSSSSSSSTTSH
T ss_pred EEEEEEcCCEEEcCCCEEEEEEEEEECC-----CCEEEEEEEEHHHHHHHHHHHhhhhcccccccCCccccccccccccH
Confidence 4689999999886555555555555532 14689999999999999999999999999999999999871 12799
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 104 EFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 104 ~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
+++++|+..|+.||+.|+++|.++.++.+..||+.+
T Consensus 78 ~~~~~R~~~L~~yL~~l~~~~~~~~s~~l~~FL~~~ 113 (113)
T PF00787_consen 78 EFIEERRQALEKYLQSLLSHPELRSSEALKEFLESS 113 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCHHHHSHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHHHHcChhhhCchHHHHhcCCC
Confidence 999999999999999999999999999999999863
No 81
>cd06884 PX_PI3K_C2_68D The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases similar to the Drosophila PI3K_68D protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a
Probab=99.79 E-value=9.1e-19 Score=136.40 Aligned_cols=108 Identities=25% Similarity=0.335 Sum_probs=93.6
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHH
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEF 105 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~ 105 (403)
..|+|-|.++.-. .++|++|.|.++... ....|.|+|||+||.+||..|.+.||...+||||+|..+|. ..++++
T Consensus 2 ~~v~v~~~~kr~~-~~~~yvY~I~V~~~~---~~~~~~V~RrYseF~~Lh~~L~~~FP~~~lp~LP~k~~~~~-~~~~~v 76 (111)
T cd06884 2 VRVTVVGFQKRYD-PEKYYVYVVEVTREN---QASPQHVFRTYKEFLELYQKLCRKFPLAKLHPLSTGSHVGR-SNIKSV 76 (111)
T ss_pred eEEEEEEEEEEec-CCCeEEEEEEEEEcC---CCceEEEEeEHHHHHHHHHHHHHHCCCCCCCCCCCceeecC-CcchHH
Confidence 3688999998765 468999999987531 23679999999999999999999999999999999988872 357899
Q ss_pred HHHHHHHHHHHHHHHhcC-ccccCChhhhccccc
Q 043025 106 IEMRRQGLDLFVNRIASH-PELQQSEDLKTFLQA 138 (403)
Q Consensus 106 i~~R~~~L~~fl~~~~~~-~~l~~~~~~~~FL~~ 138 (403)
+|+|+..|+.||+.|++. |.++.|+.+..|+.+
T Consensus 77 ~e~R~~~L~~Yl~~Ll~~~~~is~~~~v~~FF~p 110 (111)
T cd06884 77 AEKRKQDIQQFLNSLFKMAEEVSHSDLVYTFFHP 110 (111)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhcChHHHHhcCc
Confidence 999999999999999996 799999999999864
No 82
>cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membr
Probab=99.78 E-value=1.9e-18 Score=140.09 Aligned_cols=106 Identities=19% Similarity=0.275 Sum_probs=90.3
Q ss_pred cEEEEEcCceEeCCC--CcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcC-------------------
Q 043025 25 YLSVSVTDPVKLGNG--VQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYK------------------- 83 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~--~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p------------------- 83 (403)
.+.+.|.+.+...++ ...|++|.|.+.. ....|.|.|||+||.+||..|...++
T Consensus 3 ~i~a~I~~~er~~~~~~~~~~~~Y~Iev~~-----g~~~W~V~RRy~~F~~Lh~~L~~~~~~l~~p~p~k~~~~~~~~~~ 77 (140)
T cd06895 3 PIKARITDVERSGTTRHLLNPNLYTIELQH-----GQFTWTIKRRYKHFQELHQALKLYRALLRIPLPTRRHKEERLSLK 77 (140)
T ss_pred CcEEEEeEEeccCCCCCCCceEEEEEEEEE-----CCEEEEEEeeHHHHHHHHHHHHHhcccccccCchHHhhhhhhccc
Confidence 357888888776654 5789999999975 34689999999999999999998632
Q ss_pred ----------CccCCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 84 ----------GIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 84 ----------~~~iP~lP~k~~~~~~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
.+.+|+||.+..++ .+++++++|+.+||.||+.|+.+|.+++++.+..||+.
T Consensus 78 ~~~~~~~~~~~~~lP~lP~~~~~~---~~~~~ie~Rr~~Le~YL~~LL~~~~~rn~~~~~~FLeV 139 (140)
T cd06895 78 RSRKPEREKKNRRLPSLPALPDIL---VSEEQLDSRKKQLENYLQNLLKIPDYRNHPETLEFLEV 139 (140)
T ss_pred cccccccccccccCCCCCCccccc---cCHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHhhhcc
Confidence 24577888877665 48999999999999999999999999999999999974
No 83
>cd06888 PX_FISH The phosphoinositide binding Phox Homology domain of Five SH protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Five SH (FISH), also called Tks5, is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. FISH contains an N-terminal PX domain and five Src homology 3 (SH3) domains. FISH binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. This subfamily also includes proteins with a different number of SH3 domains than FISH, such as Tks4, which contains
Probab=99.76 E-value=7.7e-18 Score=132.59 Aligned_cols=105 Identities=25% Similarity=0.376 Sum_probs=91.9
Q ss_pred EEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCC---------ccCCCCCCCcccc
Q 043025 27 SVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG---------IFIPPLPEKSAVE 97 (403)
Q Consensus 27 ~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~---------~~iP~lP~k~~~~ 97 (403)
.|+|.|.++.... ++|++|.|.+... ++..|.|+|||+||..||..|...||. +++|+||+|..++
T Consensus 3 ~~~v~~~ekr~~~-~k~y~Y~i~V~~~----dg~~~~v~RrYs~F~~Lh~~L~~~FP~eag~~~~~~r~lP~lP~k~~~g 77 (119)
T cd06888 3 DVKVIDVEKRRAP-SKHYVYIINVTWS----DGSSNVIYRRYSKFFDLQMQLLDKFPIEGGQKDPSQRIIPFLPGKILFR 77 (119)
T ss_pred eEEEEEEEEEecC-CCcEEEEEEEEEc----CCCEEEEEEeHHHHHHHHHHHHHhCchhhccCCCCccccCCCCCCcccC
Confidence 6889999998744 5788999999874 457799999999999999999999997 4799999999998
Q ss_pred ccCC-CHHHHHHHHHHHHHHHHHHhcCc-cccCChhhhccccc
Q 043025 98 KFRF-SAEFIEMRRQGLDLFVNRIASHP-ELQQSEDLKTFLQA 138 (403)
Q Consensus 98 ~~~~-~~~~i~~R~~~L~~fl~~~~~~~-~l~~~~~~~~FL~~ 138 (403)
+. ..+++++|+..|+.||+.|++.| .+..|+.+..|+.+
T Consensus 78 --~s~~~~~~e~R~~~L~~Yl~~Ll~lp~~Is~~~~v~~FF~p 118 (119)
T cd06888 78 --RSHIRDVAVKRLKPIDEYCKALVRLPPHISQCDEVLRFFEA 118 (119)
T ss_pred --cchhHHHHHHHHHHHHHHHHHHHcCCceeecCHHHHHhcCC
Confidence 54 46699999999999999999986 66789999999875
No 84
>cd06887 PX_p47phox The phosphoinositide binding Phox Homology domain of the p47phox subunit of NADPH oxidase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p47phox is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal PX domain, two Src Homology 3 (SH3) domains, and a C-terminal domain that contains PxxP motifs for binding SH3 domains. The PX domain of p47phox is unique in that it contains two distinct basic pockets on the membrane-binding surface: one
Probab=99.76 E-value=8.1e-18 Score=131.93 Aligned_cols=105 Identities=19% Similarity=0.248 Sum_probs=92.1
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCC---------ccCCCCCCCccc
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG---------IFIPPLPEKSAV 96 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~---------~~iP~lP~k~~~ 96 (403)
..|.|.+.++.... ++|++|.|.+... ++..+.|+|||+||..||..|...||. .++|+||+|.++
T Consensus 2 ~~~~~~~~~kr~~~-~~~y~Y~i~v~~s----~~~~~~v~RrYsdF~~L~~~L~~~fp~Eag~~~~~~r~lP~lP~k~~~ 76 (118)
T cd06887 2 RHIALLGFEKRFVP-SQHYVYMFLVKWQ----DLSEKLVYRRFTEIYEFHKTLKEMFPIEAGDINKENRIIPHLPAPKWF 76 (118)
T ss_pred eeEEEEEEEEeecC-CCcEEEEEEEEEc----CCcEEEEEeeHHHHHHHHHHHHHhCCccccccCCCCCcCCCCCCCccc
Confidence 36889999988744 6899999998753 457899999999999999999999997 799999999999
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhc-CccccCChhhhcccccC
Q 043025 97 EKFRFSAEFIEMRRQGLDLFVNRIAS-HPELQQSEDLKTFLQAD 139 (403)
Q Consensus 97 ~~~~~~~~~i~~R~~~L~~fl~~~~~-~~~l~~~~~~~~FL~~~ 139 (403)
+ + .++.++|+.+|+.||+.|+. .|.++.|+.++.||...
T Consensus 77 ~--~--~~v~e~Rr~~L~~Yl~~Ll~lp~~i~~s~~v~~Ff~~~ 116 (118)
T cd06887 77 D--G--QRAAENRQGTLTEYCSTLLSLPPKISRCPHVLDFFKVR 116 (118)
T ss_pred C--c--chHHHHHHHHHHHHHHHHHhCCchhhCCHHHHHHhCcC
Confidence 8 3 39999999999999999965 56899999999999865
No 85
>PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain. This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A.
Probab=99.71 E-value=1.1e-15 Score=134.69 Aligned_cols=193 Identities=17% Similarity=0.281 Sum_probs=160.9
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhh-------hhhhHHHHHHHHHHHHH
Q 043025 184 EESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRH-RELGESLSDFGKAAKLLGAC-------EGDALGKAFSELGMKSE 255 (403)
Q Consensus 184 ~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~-~~l~~~~~~l~~~~~~l~~~-------e~~~L~~~~~~~~~~~~ 255 (403)
.+.+..++.+..+++.|+..++.|...+....++. ..+...+..+|.+|..|+.+ .+..|.+++..+|+++.
T Consensus 37 ~~ve~~~e~f~~F~k~Md~sv~~l~~~~~~~~kk~~~~~kkE~qkiG~af~~Ls~afe~d~~~~~~~L~~Al~~tg~~y~ 116 (237)
T PF10456_consen 37 QDVESQVESFKKFTKSMDDSVKQLSSVANEFAKKHQGPFKKEYQKIGQAFQSLSQAFELDQQQASMPLTNALKHTGDTYE 116 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTS--SSHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHhcCCchhhhHHHHHHHHHHHHHH
Confidence 34578889999999999999999999988888755 44556666666666666653 14689999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHH
Q 043025 256 ALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKEL 335 (403)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~ 335 (403)
.++..++++.......+.+.|+.|.+.+..+.+++.-...++..+..+++-. .++|+.
T Consensus 117 ~Ig~l~~~Qpk~D~~pl~d~L~~Y~GlL~~~pdii~~hk~A~~k~ke~~kl~-------------~e~K~~--------- 174 (237)
T PF10456_consen 117 EIGDLFAEQPKNDLIPLLDCLKEYRGLLSNFPDIISVHKGALQKVKECEKLS-------------DEGKMS--------- 174 (237)
T ss_dssp HHHHHHHTSGGGTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCTCHHHHH-------------HTTSS----------
T ss_pred HHHHHHHhccccchHHHHHHHHHHhhhHhhCccHHHHHHHHHHHHHHHHHHH-------------hccCCC---------
Confidence 9999999999999999999999999999999999988877777666553211 123443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043025 336 KAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLE 398 (403)
Q Consensus 336 ~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~ 398 (403)
..+++.+..+++.|+..+..|+.+|+.+|..||+.+|+.|...||.||+++++.|++.+..++
T Consensus 175 ~~~~~~v~~R~d~is~a~lAEm~hfh~~r~~Df~~~m~~yL~~Qi~Fyq~i~~kLe~a~~~fd 237 (237)
T PF10456_consen 175 QQEAEEVQRRCDVISYAVLAEMNHFHQERVEDFKSMMKTYLQQQIAFYQQIAEKLEQALQQFD 237 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456777889999999999999999999999999999999999999999999999999987653
No 86
>cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of Bem1p
Probab=99.71 E-value=1.1e-16 Score=126.00 Aligned_cols=101 Identities=24% Similarity=0.337 Sum_probs=87.4
Q ss_pred EEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcC--------CccCCCCCCCccccc
Q 043025 27 SVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYK--------GIFIPPLPEKSAVEK 98 (403)
Q Consensus 27 ~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p--------~~~iP~lP~k~~~~~ 98 (403)
.++|...... +.+++|.|.++.. ++..|.|.|||+||.+||..|...|| ..++|+||++....
T Consensus 2 ~~~V~~~~~~----~~~y~Y~i~v~~s----~~~~~~v~RrY~dFy~Lh~~L~~~fp~eag~~~~~~~lP~lP~~~~~~- 72 (112)
T cd06890 2 SASVESVLLE----DNRYWYRVRATLS----DGKTRYLCRYYQDFYKLHIALLDLFPAEAGRNSSKRILPYLPGPVTDV- 72 (112)
T ss_pred eEEEEEEEEE----CCEEEEEEEEEEc----CCcEEEEEEEHHHHHHHHHHHHHhCcHhhCCCCCCCcCCCCCCCccCc-
Confidence 4666666555 3578999999874 46889999999999999999999998 45799999877554
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcCc-cccCChhhhccccc
Q 043025 99 FRFSAEFIEMRRQGLDLFVNRIASHP-ELQQSEDLKTFLQA 138 (403)
Q Consensus 99 ~~~~~~~i~~R~~~L~~fl~~~~~~~-~l~~~~~~~~FL~~ 138 (403)
.+.+++++|+.+|+.||+.|+.+| .+..|+.++.|+..
T Consensus 73 --~~~~~~e~R~~~L~~Yl~~Ll~~p~~i~~s~~v~~Ff~~ 111 (112)
T cd06890 73 --VNDSISLKRLNDLNEYLNELINLPAYIQTSEVVRDFFAN 111 (112)
T ss_pred --chhHHHHHHHHHHHHHHHHHHcCCHHhccCHHHHHHcCc
Confidence 689999999999999999999999 99999999999864
No 87
>cd07290 PX_PI3K_C2_beta The phosphoinositide binding Phox Homology Domain of the Beta Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domai
Probab=99.70 E-value=1.7e-16 Score=122.07 Aligned_cols=105 Identities=18% Similarity=0.271 Sum_probs=87.1
Q ss_pred EEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCC-HHHH
Q 043025 28 VSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFS-AEFI 106 (403)
Q Consensus 28 v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~-~~~i 106 (403)
|-|+..++.-.. ++|.+|.|.++..- ....|.|.|||+||..||..|.+.||+..+|+||+|..++ +.+ .+.+
T Consensus 2 ~~~~~~~kr~~p-~k~y~Y~I~V~~~~---~~~~~~I~RrY~eF~~Lh~kLk~~FP~~~lP~LP~k~~~g--~s~~~~va 75 (109)
T cd07290 2 VFLCRHESTFNP-SKGYAYVVKVQREG---HKEATFVQRTFEEFQELHNKLRLLFPSSKLPSFPSRFVIG--RSRGEAVA 75 (109)
T ss_pred eeEeeeeEEecC-CCcEEEEEEEEECC---CceeEEEEeeHHHHHHHHHHHHHHCccccCCCCCCCcccC--ccccHHHH
Confidence 557777777544 46777999998741 1234899999999999999999999999999999999998 543 7999
Q ss_pred HHHHHHHHHHHHHHh-cCccccCChhhhccccc
Q 043025 107 EMRRQGLDLFVNRIA-SHPELQQSEDLKTFLQA 138 (403)
Q Consensus 107 ~~R~~~L~~fl~~~~-~~~~l~~~~~~~~FL~~ 138 (403)
|+|+.+|+.||+.|+ ..|.+..|+.+..|+.+
T Consensus 76 e~R~~~L~~Yl~~Ll~~~~~Is~s~~v~~FF~p 108 (109)
T cd07290 76 ERRKEELNGYIWHLIHAPPEVAECDLVYTFFHP 108 (109)
T ss_pred HHHHHHHHHHHHHHHcCChheecCHHHHHhccc
Confidence 999999999997755 56789999999999864
No 88
>cd07289 PX_PI3K_C2_alpha The phosphoinositide binding Phox Homology Domain of the Alpha Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=99.70 E-value=1.8e-16 Score=121.72 Aligned_cols=104 Identities=20% Similarity=0.256 Sum_probs=87.8
Q ss_pred EEEcCceEeCCCCcceEEEEEEEEecCCCCCCC-ceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCC-CHHH
Q 043025 28 VSVTDPVKLGNGVQAYISYRVITKTNFPEYQGP-EKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRF-SAEF 105 (403)
Q Consensus 28 v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~-~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~-~~~~ 105 (403)
|+|.+.++.... +.|.+|.|.+... ++. ...|.|||++|..||..|.+.||.+.+|+||+|.++| +. ..+.
T Consensus 2 ~~V~~f~Kr~~p-~k~yvY~i~V~~~----~~~~~~~I~Rry~eF~~Lh~kL~~~Fp~~~lP~lP~k~~~g--rs~~~~v 74 (109)
T cd07289 2 VSVFTYHKRYNP-DKHYIYVVRILRE----GQIEPSFVFRTFDEFQELHNKLSILFPLWKLPGFPNKMVLG--RTHIKDV 74 (109)
T ss_pred cEEeeEEEEEcC-CCeEEEEEEEEEC----CCceeEEEEeeHHHHHHHHHHHHHHCCcccCCCCCCCeeeC--CCcchHH
Confidence 678888877643 5678999999874 222 2559999999999999999999999999999999998 43 3689
Q ss_pred HHHHHHHHHHHHHHHhcCc-cccCChhhhccccc
Q 043025 106 IEMRRQGLDLFVNRIASHP-ELQQSEDLKTFLQA 138 (403)
Q Consensus 106 i~~R~~~L~~fl~~~~~~~-~l~~~~~~~~FL~~ 138 (403)
+++|+.+|+.||+.|++-| .++.|+.+..|+.+
T Consensus 75 ae~R~~~L~~Yl~~Ll~~p~~Is~~d~v~~FF~p 108 (109)
T cd07289 75 AAKRKVELNSYIQSLMNSSTEVAECDLVYTFFHP 108 (109)
T ss_pred HHHHHHHHHHHHHHHHcCChhhhcChHHHHhccc
Confidence 9999999999999999865 78889999999863
No 89
>cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosi
Probab=99.69 E-value=5.6e-15 Score=124.43 Aligned_cols=193 Identities=17% Similarity=0.240 Sum_probs=158.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh-------hhhhhHHHHHHHHHHHHHH
Q 043025 185 ESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRH-RELGESLSDFGKAAKLLGA-------CEGDALGKAFSELGMKSEA 256 (403)
Q Consensus 185 e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~-~~l~~~~~~l~~~~~~l~~-------~e~~~L~~~~~~~~~~~~~ 256 (403)
+++...+.+..++++|+..++.|..++....++. ..+-..+..+|.+|..|+. .-+..|++++...|.+++.
T Consensus 9 ~VE~kid~f~~F~k~MD~svk~l~~~~~e~~kk~~~~~KkEyqkiG~af~~LsqaFe~d~~~~~~~L~~Ai~~tg~~y~~ 88 (210)
T cd07668 9 EIEQKCEAVGRFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSTSGYQGETDLNDAITEAGKTYEE 88 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHH
Confidence 4578889999999999999999998887777654 2344455555555555554 2245799999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHH
Q 043025 257 LSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELK 336 (403)
Q Consensus 257 ~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~ 336 (403)
++...++|.......+.+.|+.|.+.+..+.+++.-...++..+.++++-. .++|+. .
T Consensus 89 IG~~faeQpk~Dl~pl~d~L~~Y~G~L~~fPDIi~v~KgA~~KvkE~~k~~-------------~egkm~---------~ 146 (210)
T cd07668 89 IASLVAEQPKKDLHFLMETNHEYKGFLGCFPDIIGAHKGAIEKVKESDKLV-------------ATSKIT---------L 146 (210)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHhCccccCccHHHHHHHHHHHHHHHHHHh-------------hhccch---------h
Confidence 999999999999999999999999999999999987777776666654321 123333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 337 AESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEA 399 (403)
Q Consensus 337 ~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~ 399 (403)
.+.+....+++.|+..+..|+.+|+..|..||+..|..|.+.||.||+++....+..+..++.
T Consensus 147 ~~~~~v~~R~dviSya~~AEm~HFh~~r~~d~k~~M~~yL~eQi~Fyq~v~~kl~~~l~~y~~ 209 (210)
T cd07668 147 QDKQNMVKRVSTMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALSRFPV 209 (210)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 456677889999999999999999999999999999999999999999999999999988765
No 90
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=99.67 E-value=1.4e-14 Score=122.03 Aligned_cols=190 Identities=15% Similarity=0.271 Sum_probs=154.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhh-------hhhhHHHHHHHHHHHHHH
Q 043025 185 ESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRH-RELGESLSDFGKAAKLLGAC-------EGDALGKAFSELGMKSEA 256 (403)
Q Consensus 185 e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~-~~l~~~~~~l~~~~~~l~~~-------e~~~L~~~~~~~~~~~~~ 256 (403)
+++..++.+..++.+|+..++.|..++....++. ..+-..+..+|.+|..|+.. -+..|+.++...|.+++.
T Consensus 9 ~Ve~kid~f~~F~k~MD~svk~l~~~~~e~~kk~~~~~kkEyqkiG~af~~LsqaFe~d~~~~s~~L~~Av~~tG~~y~~ 88 (207)
T cd07669 9 DVEERVDVFKAFSKKMDDSVLQLSNVASELVRKHLGGFRKEFQKLGNAFQAISHSFQLDPPYSSEALNNAISHTGRTYEA 88 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHH
Confidence 4578889999999999999999998887777654 23444555556555555542 245799999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHH
Q 043025 257 LSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELK 336 (403)
Q Consensus 257 ~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~ 336 (403)
++...+++.......+.+.|+.|.+.+..+.+++.--..++..+.++++-. .++|+. .
T Consensus 89 IG~~faeQpk~D~~pl~d~L~~Y~GlL~~fPDii~v~K~A~~KvkE~~k~~-------------~e~Km~---------~ 146 (207)
T cd07669 89 VGEMFAEQPKNDLFQMLDTLSLYQGLLSNFPDIIHLQKGAFAKVKESQRMS-------------DEGRMD---------Q 146 (207)
T ss_pred HHHHHHhcchhhhhHHHHHHHHHhCcccCCccHHHHHHHHHHHHHHHHHhh-------------HHhhhh---------h
Confidence 999999999999999999999999999999999887777776665553211 123333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 337 AESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 337 ~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~ 396 (403)
.+.+....+++.|+..+..|+.+|+..|..||+..|..|.+.||.||+++....+..++.
T Consensus 147 ~~~~~v~~R~~~isya~~AEm~HFh~~r~~d~k~~M~~yL~eQi~Fyq~v~~kle~al~~ 206 (207)
T cd07669 147 DEADGIRKRCRVVGFALQAEMNHFHQRRELDFKQMMQHYLRQQIIFYQRVSQQLEKTLRM 206 (207)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455667889999999999999999999999999999999999999999999999988764
No 91
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.67 E-value=1.9e-14 Score=120.70 Aligned_cols=190 Identities=15% Similarity=0.204 Sum_probs=155.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhh-------hhhhHHHHHHHHHHHHHH
Q 043025 185 ESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRH-RELGESLSDFGKAAKLLGAC-------EGDALGKAFSELGMKSEA 256 (403)
Q Consensus 185 e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~-~~l~~~~~~l~~~~~~l~~~-------e~~~L~~~~~~~~~~~~~ 256 (403)
+++..++.+..+++.|+..++.|..++....++. ..+-..+..+|.+|..|+.. -+..|+.++...|.+++.
T Consensus 9 ~VE~kid~f~~F~k~Md~sv~~l~~~~~e~~kk~~~~~KkEyqkiG~af~~LsqaF~~d~~~~s~~L~~Av~~tg~~y~~ 88 (207)
T cd07670 9 DVESRIDGFKAFTKKMDESVLQLNHTANEFARKQVTGFKKEYQKVGQSFKGLSQAFELDQQAFSAGLNQAIAFTGEAYEA 88 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHccCCcccchHHHHHHHHHHHHHHH
Confidence 4578889999999999999999998888777764 23444555555555555542 245899999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHH
Q 043025 257 LSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELK 336 (403)
Q Consensus 257 ~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~ 336 (403)
++...+++.......+.+.|+.|.+.+..+.+++.-...++..+..+++-. .++|++ .
T Consensus 89 IG~~faeQpk~Dl~Pl~d~L~~Y~G~L~~fPDii~v~KgA~~KvKE~~k~~-------------~egkm~---------~ 146 (207)
T cd07670 89 IGELFAEQPRQDLDPVMDLLALYQGHLANFPDIIHVQKGALTKVKESKKHV-------------EEGKME---------L 146 (207)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHhCccccCCchHHHhHHHHHHHHHHHHHH-------------Hhhccc---------h
Confidence 999999999999999999999999999999999987777776666654321 122333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 337 AESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 337 ~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~ 396 (403)
.+.+....+++.|+..+..|+.+|++.|..||+.+|..|.+.||.||+++..-.+..+..
T Consensus 147 ~~~~~v~~R~dviSya~~AEm~HFh~~r~~d~k~~M~~yL~~QI~Fyq~v~~kl~~~l~~ 206 (207)
T cd07670 147 QKADGIQDRCNIISFATLAEIHHFHKIRVRDFKSQMQHFLQQQIRFFQKVTQKLEEALQK 206 (207)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355667889999999999999999999999999999999999999999999999887764
No 92
>cd07296 PX_PLD1 The phosphoinositide binding Phox Homology domain of Phospholipase D1. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD1 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It acts as an effector of Rheb in the signaling of the mammalian target of rapamycin (mTOR), a serine/threonine protein kinase that transduces nutrients and other stimuli to regulate many cellular processes. PLD1 also regulates the secretion of the procoagulant von Will
Probab=99.64 E-value=1.5e-15 Score=120.34 Aligned_cols=107 Identities=18% Similarity=0.287 Sum_probs=82.5
Q ss_pred cEEEEEcCceEeCCC----CcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCcc-----
Q 043025 25 YLSVSVTDPVKLGNG----VQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSA----- 95 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~----~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~----- 95 (403)
.+.+.|.|.+.-..+ ...|++|.|.++. ....|.|.|||+||..||..|.. |...+--|||+|..
T Consensus 3 ~i~~~i~~~eR~~~~~~~~~~~~t~Y~I~v~~-----g~~~w~V~rRy~~F~~Lh~~L~~-~~~~~~~plP~k~~~~~r~ 76 (135)
T cd07296 3 PIKARVLEVERFTSTSDVKKPSLNVYTIELTH-----GEFTWQVKRKFKHFQELHRELLR-YKAFIRIPIPTRSHTVRRQ 76 (135)
T ss_pred ceEEEEEEEEEeeccccccccceEEEEEEEEe-----CCEEEEEEeehHHHHHHHHHHHh-cCCCCCCCCCcccchhhcc
Confidence 467888888876533 5789999999874 23589999999999999999997 54433236778766
Q ss_pred ------------ccccCCCHHHHH----HHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 96 ------------VEKFRFSAEFIE----MRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 96 ------------~~~~~~~~~~i~----~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
+.. ..+....+ +||.+||.||+.|+..|.+++++.+.+||+.
T Consensus 77 ~~~~~~~~~~p~lp~-~~~~~v~e~~~~sRr~~LE~YL~~LL~~~~~Rn~~a~~eFLeV 134 (135)
T cd07296 77 TIKRGEPRHMPSLPR-GAEEEAREEQFSSRRKQLEDYLSKLLKMPMYRNYHATMEFIDV 134 (135)
T ss_pred ccccccccccccCCC-CCCccccccchHHHHHHHHHHHHHHhcChhhcCCHHHHhheec
Confidence 220 11222444 8999999999999999999999999999974
No 93
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.63 E-value=1.2e-12 Score=114.83 Aligned_cols=207 Identities=17% Similarity=0.192 Sum_probs=172.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHH
Q 043025 186 SNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEG-DALGKAFSELGMKSEALSVKLQRE 264 (403)
Q Consensus 186 ~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~-~~L~~~~~~~~~~~~~~~~~~~~~ 264 (403)
.|+.|......+..++...+.|.+-+.+....-+.|..+...++..+..+..++. +.+..+......+...+.......
T Consensus 9 ~D~~fe~~~~rf~~lE~~~~kL~Ke~K~Y~dav~~m~~a~~~is~~l~~~~~~~~~~~~~~~~e~y~~~~~~l~~~~~~~ 88 (225)
T cd07590 9 VDRELEREVQKLQQLESTTKKLYKDMKKYIEAVLALSKAEQRLSQDLASGPLCEDNDELRNLVEALDSVTTQLDKTVQEL 88 (225)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999988766553 233334455555555555555566
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHH
Q 043025 265 AHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTR 344 (403)
Q Consensus 265 ~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~ 344 (403)
.......+.+|+..|..++..++.++..|..++.+|....+++.+...+ +++... +..+.+++++++.++.
T Consensus 89 ~~~~~~~vl~Pl~~~~s~f~~I~~~I~KR~~Kl~DYD~~r~~~~kl~~K--------~~k~~~-~~KL~kae~el~~Ak~ 159 (225)
T cd07590 89 VNLIQKTFIEPLKRLRSVFPSVNAAIKRREQSLQEYERLQAKVEKLAEK--------EKTGPN-LAKLEQAEKALAAARA 159 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC--------ccCChh-HHHHHHHHHHHHHHHH
Confidence 6667778899999999999999999999999999999988776654322 122222 4667788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043025 345 RFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEACS 401 (403)
Q Consensus 345 ~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~~ 401 (403)
.|+.++..++.||+.|..-|..-|...|.+|+..|+.||.++-.....+.+.+++..
T Consensus 160 ~ye~~N~~L~~ELP~l~~~r~~f~~p~Fqsl~~~Ql~f~~e~~k~~~~l~~~~d~~~ 216 (225)
T cd07590 160 DFEKQNIKLLEELPKFYNGRTDYFQPCFEALIKSQVLYYSQSTKIFTQLAPNLDNPI 216 (225)
T ss_pred HHHHHHHHHHHHhHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999999999999998887653
No 94
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=99.59 E-value=5.6e-12 Score=109.72 Aligned_cols=201 Identities=11% Similarity=0.117 Sum_probs=168.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 186 SNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREA 265 (403)
Q Consensus 186 ~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~ 265 (403)
.|+.|......+..++...+.|.+-+......-+.+.++-..|+.++..+....+... ..+...++.......+..
T Consensus 10 ~D~~Fe~~e~~f~~~e~~~~kL~k~~K~Y~~av~~m~~~q~~~~e~l~~lY~p~~~~~----~~~~~v~e~~d~~~~~l~ 85 (211)
T cd07588 10 RDEVFDEHVNNFNKQQASANRLQKDLKNYLNSVRAMKQASKTLSETLKELYEPDWPGR----EHLASIFEQLDLLWNDLE 85 (211)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccH----HHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999988876553221 222334444445555666
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHH
Q 043025 266 HQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRR 345 (403)
Q Consensus 266 ~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~ 345 (403)
......+..|+..|..++..++..+..|..++.+|..+.+++++...+- . .-+..+.+++++++.++..
T Consensus 86 ~~l~~~Vl~Pl~~~~s~f~~i~k~I~KR~~KllDYDr~r~~~~kL~~K~-------~----kde~KL~kae~el~~Ak~~ 154 (211)
T cd07588 86 EKLSDQVLGPLTAYQSQFPEVKKRIAKRGRKLVDYDSARHNLEALKAKK-------K----VDDQKLTKAEEELQQAKKV 154 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHhcc-------c----ccHhhHHHHHHHHHHHHHH
Confidence 6677889999999999999999999999999999999987776553321 1 1235566688888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043025 346 FETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEACS 401 (403)
Q Consensus 346 ~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~~ 401 (403)
|+.++..++.|||.|..-|..-+...|.+++..|..||.++..+..++...++.++
T Consensus 155 Ye~lN~~L~~ELP~L~~~ri~f~~p~F~sl~~~q~~F~~e~~~~~~~l~~~~~~l~ 210 (211)
T cd07588 155 YEELNTELHEELPALYDSRIAFYVDTLQSIFAAESVFHKEIGKVNTKLNDVMDGLA 210 (211)
T ss_pred HHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999988877654
No 95
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=99.55 E-value=7.1e-12 Score=109.26 Aligned_cols=186 Identities=20% Similarity=0.266 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 198 FELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD----ALGKAFSELGMKSEALSVKLQREAHQLLMNFE 273 (403)
Q Consensus 198 ~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~----~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (403)
+.++..++.+.+.+..+++....+......|+.+|..++..... .++.++..+|.+...+......+.......+.
T Consensus 3 ~~~~~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~v~ 82 (194)
T cd07307 3 DELEKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPDLSNTDLGEALEKFGKIQKELEEFRDQLEQKLENKVI 82 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777888888888888888888999999988876633 27889999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 274 EPLKDYV-RAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRL 352 (403)
Q Consensus 274 e~l~~~~-~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~ 352 (403)
+||..|. ..+..+++..+.++.+..+|+.+..++.+...+ +. -...+..++.+++.++..|+..+..
T Consensus 83 ~pL~~~~~~~~~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~-----~~-------~~~~l~~~~~~~~~ar~~y~~~~~~ 150 (194)
T cd07307 83 EPLKEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKK-----KK-------DSSKLAEAEEELQEAKEKYEELREE 150 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cC-------ChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999988776544311 11 2245666778888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 353 MNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLP 395 (403)
Q Consensus 353 ~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~ 395 (403)
+..++..|+..+..++...|..|+..|+.|++++.+.|+.+.+
T Consensus 151 ~~~~l~~~~~~~~~~~~~~L~~~~~~q~~~~~~~~~~~~~l~~ 193 (194)
T cd07307 151 LIEDLNKLEEKRKELFLSLLLSFIEAQSEFFKEVLKILEQLLP 193 (194)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC
Confidence 9999999999999999999999999999999999999998865
No 96
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=99.54 E-value=2.1e-11 Score=104.94 Aligned_cols=200 Identities=13% Similarity=0.109 Sum_probs=161.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 186 SNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREA 265 (403)
Q Consensus 186 ~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~ 265 (403)
.|+.|.........++...+.|.+-+.+....-+.+..+-..|+.++..+....++.. .....++...+. ...+..
T Consensus 10 ~D~~Fe~~errf~~lE~~~~kL~Ke~K~Y~dav~~m~~sq~~~se~l~e~Y~p~~~g~-~~~~~~~~~~d~---~~~dl~ 85 (211)
T cd07611 10 KDEQFEEYVQNFKRQETEGTRLQRELRAYLAAIKGMQEASKKLTESLHEVYEPDWYGR-DDVKTIGEKCDL---LWEDFH 85 (211)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccc-chHHHHHhhHHH---HHHHHH
Confidence 4899999999999999999999999999999999999999999999998876553211 112233333332 233333
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHH
Q 043025 266 HQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRR 345 (403)
Q Consensus 266 ~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~ 345 (403)
......+++|+..|..++..++.++..|..++.+|..+.+++++...+- +.+ +..+.+++++++.|+..
T Consensus 86 ~~lv~~vl~P~~~~~s~f~~I~~~I~KR~hKllDYD~~r~~~~kL~~k~----~kD-------e~KL~kAe~el~~Ak~~ 154 (211)
T cd07611 86 QKLVDGALLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQTSK----RKD-------EGRIAKAEEEFQKAQKV 154 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc----ccc-------HHHHHHHHHHHHHHHHH
Confidence 3455568999999999999999999999999999999987766553221 112 34566778888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043025 346 FETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 346 ~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~ 400 (403)
|+.++..++.|||.+..-|..-|...|..++..|..||.++..+-..+-.-++.+
T Consensus 155 ye~lN~~Lk~ELP~L~~~Ri~f~~psFeal~~~q~~f~~E~~k~~~~l~~~~~~l 209 (211)
T cd07611 155 FEEFNVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHKEISVLCHKLYEVMTKL 209 (211)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999988887776654
No 97
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=99.53 E-value=3e-11 Score=103.50 Aligned_cols=202 Identities=14% Similarity=0.184 Sum_probs=171.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAH 266 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~ 266 (403)
|....-+.+.|...|.++..|+..+..++.....|-+-...|+..+...+..|...+..++..++.++..+.+-...+.+
T Consensus 10 d~q~K~i~~~i~~vEkhFg~lC~~~a~ytRKtArLRDk~D~lak~l~~yA~~E~~~l~~~L~~fae~la~vqDYRqa~v~ 89 (219)
T PF06730_consen 10 DSQTKFIQDRITNVEKHFGELCQLFAAYTRKTARLRDKGDELAKQLQDYANTENPNLKLGLKNFAECLAKVQDYRQAEVE 89 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55666688889999999999999999998888888888889999999999999888999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCc-chHHHHHHHHHHHHHHHHHHHHH
Q 043025 267 QLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRS-DKVGEAEIEYKELKAESEDSTRR 345 (403)
Q Consensus 267 ~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~-~ki~~l~~~i~~~~~~~~~~~~~ 345 (403)
++...+.+||..|...|...++-++....+ .++-.++..+|+++++..+ ++ ..|.+++.++..+..+
T Consensus 90 RlE~KVv~pL~~Y~~~cK~~r~elK~~~~a-------r~kEikq~~~Leklr~k~psdr-----~~isqae~el~kas~~ 157 (219)
T PF06730_consen 90 RLEAKVVEPLSQYGTICKHARDELKKFNKA-------RNKEIKQLKQLEKLRQKNPSDR-----QIISQAESELQKASVD 157 (219)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHccCCccc-----hhhhHHHHHHHHHHHH
Confidence 999999999999999998888766554333 3333445667788885433 32 2355667777777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043025 346 FETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 346 ~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~ 400 (403)
....+..+..-+..|++.|..|++.+|.+|+..++.||-+.+++|......+.++
T Consensus 158 ~~rt~~~Lee~i~~FEkqKl~DlK~i~sdFv~iEM~fHaKALEv~T~a~q~i~~i 212 (219)
T PF06730_consen 158 ATRTTKQLEETIDNFEKQKLKDLKKIFSDFVTIEMVFHAKALEVYTAAYQDIQNI 212 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888899999999999999999999999999999999999999999998888765
No 98
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=99.51 E-value=3.7e-11 Score=107.83 Aligned_cols=196 Identities=18% Similarity=0.286 Sum_probs=167.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHH
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLS-------DFGKAAKLLGACE--GDALGKAFSELGMKSEAL 257 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~-------~l~~~~~~l~~~e--~~~L~~~~~~~~~~~~~~ 257 (403)
|+.|......+..++..+..|.+.+...+.....+..... .||.++..++... ...++..+..++.++..+
T Consensus 25 D~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i 104 (229)
T PF03114_consen 25 DEEFEELEEKFKQLEESIKKLQKSLKKYLDSIKKLSASQKNMKSPFEELADALIELGSEFSDDSSLGNALEKFGEAMQEI 104 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTHHHHHHHHHHHHHHHCTSTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHH
Confidence 7889999999999999999999888888888777777777 8999998887654 234778899999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHH
Q 043025 258 SVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKA 337 (403)
Q Consensus 258 ~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~ 337 (403)
..............+.+||..+...+..++..++.|..+..+|+.+...+.+.+.. .++... +.
T Consensus 105 ~~~~~~~~~~~~~~vi~pl~~~~~~~~~i~~~~kkr~~~~ldyd~~~~k~~k~~~~--------~~~~~~--------~~ 168 (229)
T PF03114_consen 105 EEARKELESQIESTVIDPLKEFLKEFKEIKKLIKKREKKRLDYDSARSKLEKLRKK--------KSKSSK--------EE 168 (229)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT--------SSBTHH--------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hccccc--------HH
Confidence 88888888888889999999999999999999999999999999987776554321 111111 66
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043025 338 ESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLE 398 (403)
Q Consensus 338 ~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~ 398 (403)
+++.++..|+.++..+..+++.|...+...+...|..|+..+..||+++.+.|+++.+.++
T Consensus 169 ~l~~a~~~f~~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~~~~~~l~~l~~~l~ 229 (229)
T PF03114_consen 169 KLEEAKEEFEALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQYFQQLYQILEELQPQLA 229 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 7888899999999999999999998888888899999999999999999999999999874
No 99
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=99.51 E-value=6e-11 Score=105.04 Aligned_cols=203 Identities=15% Similarity=0.146 Sum_probs=165.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHHHHHHHHHHHHH
Q 043025 186 SNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDA-LGKAFSELGMKSEALSVKLQRE 264 (403)
Q Consensus 186 ~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~-L~~~~~~~~~~~~~~~~~~~~~ 264 (403)
.|+.|......+..++...+.|.+.+.......+.+......++..|..+.....+. ..........+++.+.......
T Consensus 9 ~D~~F~~~e~~f~~~e~~~~kL~k~~k~y~da~~~l~~~q~~i~~~l~~lY~p~~~~~~~~~~~~y~~~v~~l~~~~~~e 88 (224)
T cd07591 9 VDREFEFEERRYRTMEKASTKLQKEAKGYLDSLRALTSSQARIAETISSFYGDAGDKDGAMLSQEYKQAVEELDAETVKE 88 (224)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHhHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999887665421 1122334444445544332222
Q ss_pred HH-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHH
Q 043025 265 AH-QLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDST 343 (403)
Q Consensus 265 ~~-~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~ 343 (403)
.. .....+..|+..|..++..++.+++.|..++.+|..+.+++++...+ ..+ -+..|.+++.+++.++
T Consensus 89 l~~~~~~~V~~Pl~~~~~~~~~i~k~IkKR~~KllDYD~~~~k~~kl~~K-----~~k------d~~kL~kae~el~~a~ 157 (224)
T cd07591 89 LDGPYRQTVLDPIGRFNSYFPEINEAIKKRNHKLLDYDAARAKVRKLIDK-----PSE------DPTKLPRAEKELDEAK 157 (224)
T ss_pred HHhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHhhHHHHHHHHHHHHhc-----ccC------CHHHHHHHHHHHHHHH
Confidence 22 25667889999999999999999999999999999998877654322 111 1266778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 344 RRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEA 399 (403)
Q Consensus 344 ~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~ 399 (403)
+.|+.++..++.||+.|..-+..-+...|..|+..|..++.+.......+...+.+
T Consensus 158 ~~Ye~lN~~Lk~ELP~l~~~r~~~l~~~f~s~~~iQ~~~~~~~y~~l~~~~~~~~~ 213 (224)
T cd07591 158 EVYETLNDQLKTELPQLVDLRIPYLDPSFEAFVKIQLRFFTEGYERLAQVQRYLDA 213 (224)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 99999999999999999999999999999999999999999999999988887765
No 100
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=99.51 E-value=4e-11 Score=103.27 Aligned_cols=201 Identities=10% Similarity=0.091 Sum_probs=162.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 186 SNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREA 265 (403)
Q Consensus 186 ~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~ 265 (403)
.|+.|+......+.++...+.|.+-+.+....-+.+.++-..|+.++..+....++... -+..+....+ ....+..
T Consensus 10 ~D~~Fe~~e~rf~~le~~~~kL~Ke~K~Y~~av~~M~~~q~~~se~l~e~Y~~~~~~~~-~~~~v~e~~d---~~~~~~~ 85 (211)
T cd07612 10 KDEQFEQCAMNLNMQQSDGNRLYKDLKAYLNAVKVMHESSKRLSQTLQDIYEPDWDGHE-DLGAIVEGED---LLWNDYE 85 (211)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCccc-HHHHHHhccH---HHHHHHH
Confidence 48999999999999999999999999999999999999999999999988765543211 1222222222 2334444
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHH
Q 043025 266 HQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRR 345 (403)
Q Consensus 266 ~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~ 345 (403)
......+++||..|..++..++..+..|..++.+|..+.+++.+.+.+- ..+ +..+.+++.+++.|+..
T Consensus 86 ~~~~~~vL~pi~~~~s~f~~i~~~i~KR~~KllDYD~~R~~~~kl~~k~----~kD-------~~KL~kAe~el~~Ak~~ 154 (211)
T cd07612 86 AKLHDQALRTMESYMAQFPDVKERVAKRGRKLVDYDSARHHLEALQNAK----KKD-------DAKIAKAEEEFNRAQVV 154 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc----ccc-------HHHHHHHHHHHHHHHHH
Confidence 4555668999999999999999999999999999999887766544221 111 45667788888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043025 346 FETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEACS 401 (403)
Q Consensus 346 ~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~~ 401 (403)
|+.++..++.|||.+..-|..-|...|.+++..|..||.++..+...+..-++.+.
T Consensus 155 ye~lN~~L~~ELP~L~~~Ri~f~~psFeal~~~q~~F~~E~~k~~~~l~~~~~~l~ 210 (211)
T cd07612 155 FEDINRELREELPILYDSRIGCYVTVFQNISNLRDTFYKEMSKLNHDLYNVMKKLE 210 (211)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999998888777653
No 101
>cd06889 PX_NoxO1 The phosphoinositide binding Phox Homology domain of Nox Organizing protein 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1, a homolog of the p47phox subunit of phagocytic NADPH oxidase, is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain
Probab=99.45 E-value=1.2e-12 Score=102.34 Aligned_cols=102 Identities=17% Similarity=0.242 Sum_probs=84.6
Q ss_pred EEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCC---------ccCCCCCCCcccc
Q 043025 27 SVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG---------IFIPPLPEKSAVE 97 (403)
Q Consensus 27 ~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~---------~~iP~lP~k~~~~ 97 (403)
.|..-+.++ .+.|.+|.|.++.. ++..+.|+|||+||..||..|...||. +++|.||.+.+++
T Consensus 7 ~v~~~g~~k----~~~h~~Y~i~V~ws----dgs~~~iyR~y~eF~~lh~~L~~~FP~EaG~~~~~~riLP~lP~~~~~~ 78 (121)
T cd06889 7 DVQGVGVMQ----KRRHKTYMFSVLWS----DGSELFVYRSLEEFRKLHKQLKEKFPVEAGLLRSSDRVLPKFKDAPSLG 78 (121)
T ss_pred EEEEEeeec----ccceeEEEEEEEEc----CCcEEEEEEEHHHHHHHHHHHHHHCCcccCCCCCCCcccCCCCCCcccC
Confidence 444444444 35788999999875 678899999999999999999999985 6899999999998
Q ss_pred ccCC--CHHHHHHHHHHHHHHHHHHhcCc-cccCChhhhccccc
Q 043025 98 KFRF--SAEFIEMRRQGLDLFVNRIASHP-ELQQSEDLKTFLQA 138 (403)
Q Consensus 98 ~~~~--~~~~i~~R~~~L~~fl~~~~~~~-~l~~~~~~~~FL~~ 138 (403)
+. ..+.-+.|+..|+.|++.|++-| .+..|+.+..|+.+
T Consensus 79 --~~~~~~~~a~~R~~~L~~Y~~~Ll~lp~~Is~~~~V~~FF~p 120 (121)
T cd06889 79 --SLKGSTSRSLARLKLLETYCQELLRLDEKVSRSPEVIQFFAP 120 (121)
T ss_pred --CcccccchHHHHHHHHHHHHHHHHcCCcceecCHHHHHhcCC
Confidence 43 23356799999999999999876 77889999999865
No 102
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=99.41 E-value=6.1e-10 Score=98.92 Aligned_cols=198 Identities=15% Similarity=0.154 Sum_probs=158.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hH---------HHHHHHHHHHH
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD---AL---------GKAFSELGMKS 254 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~---~L---------~~~~~~~~~~~ 254 (403)
|+.|......+..++..++.|.+.+.........+.....+++.++..+.....+ .. -..+..+..++
T Consensus 1 D~~f~~~~~~f~~~e~~~~kL~k~~k~y~~a~~~l~~~~~~~~~~~~~ly~p~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 80 (216)
T cd07599 1 DEQFEELEKDFKSLEKSLKKLIEQSKAFRDSWRSILTHQIAFAKEFAELYDPIVGPKESVGSHPAPESTLARLSRYVKAL 80 (216)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCcCcCCCCCcHHHHHHHHHHHHHH
Confidence 5678888889999999999999999999999999999999999999988764311 00 12234455555
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHhcccCcchHHHHHHHHH
Q 043025 255 EALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKL-KEINLDKLMLTRSDKVGEAEIEYK 333 (403)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~-k~~~l~kl~~~~~~ki~~l~~~i~ 333 (403)
..+..............+..|+..+..++..++..++.|..++.+|....+++++ .. .+..+..+-+..+.
T Consensus 81 ~~l~~~~~~~l~~i~~~V~~P~~~~~~~~~~i~k~IkKR~~k~lDyd~~~~k~~k~~~--------~k~~~~~kd~~kl~ 152 (216)
T cd07599 81 EELKKELLEELEFFEERVILPAKELKKYIKKIRKTIKKRDHKKLDYDKLQNKLNKLLQ--------KKKELSLKDEKQLA 152 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh--------cCCCCChhHHHHHH
Confidence 6655544455556777889999999999999999999999999999999888766 21 11122233356777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 334 ELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRT 392 (403)
Q Consensus 334 ~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~ 392 (403)
+++.+++.++..|+.++..++.||+.|..-+..-+..++..|...|+.+|..+....+.
T Consensus 153 kae~~l~~a~~~y~~lN~~Lk~eLP~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~l~~ 211 (216)
T cd07599 153 KLERKLEEAKEEYEALNELLKSELPKLLALADEFLPPLFKSFYYIQLNIYYTLHEYLQE 211 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888999999999999999999999999999999999999999999999988776554
No 103
>smart00721 BAR BAR domain.
Probab=99.36 E-value=1.9e-09 Score=97.65 Aligned_cols=201 Identities=15% Similarity=0.134 Sum_probs=160.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhh-------h-hhhHHHHHHHHHHHHH
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLV---KRHRELGESLSDFGKAAKLLGAC-------E-GDALGKAFSELGMKSE 255 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~---k~~~~l~~~~~~l~~~~~~l~~~-------e-~~~L~~~~~~~~~~~~ 255 (403)
|+.|......++.++..+..|.+.+...+ ...+.+......++..+..+... . ...++.++..+|..+.
T Consensus 26 D~~f~~le~~~~~~~~~~~kl~k~~~~y~q~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 105 (239)
T smart00721 26 DEDFEELERRFDTTEAEIEKLQKDTKLYLQPNPAVRAKLASQKKLSKSLGEVYEGGDDGEGLGADSSYGKALDKLGEALK 105 (239)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhcCCCCccccCchhHHHHHHHHHHHHHH
Confidence 89999999999999999999999999888 67677777777777777666332 1 2346677788888888
Q ss_pred HHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHH
Q 043025 256 ALSVKLQREAHQLLMNFEEPLK-DYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKE 334 (403)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~e~l~-~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~ 334 (403)
.+....... ......+..++. .+...+..++..++.|..+..+|..+..++.+.+.. +.++. .+ ++.+
T Consensus 106 ~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~kk~~~~~lDyD~~~~kl~~~~~~-----~~~~~----~~-kl~~ 174 (239)
T smart00721 106 KLLQVEESL-SQVKRTFILPLLNFLLGEFKEIKKARKKLERKLLDYDSARHKLKKAKKS-----KEKKK----DE-KLAK 174 (239)
T ss_pred HHHhhHHHH-HHHHHHhhhhHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh-----ccCCh----hh-hhhh
Confidence 877766556 555556565554 566889999999999999999999998877654322 11111 12 6777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043025 335 LKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLE 398 (403)
Q Consensus 335 ~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~ 398 (403)
++.+++.++..|+.++..+..|++.|...+...+...|.+|+..|..||.++...|+.+.+.++
T Consensus 175 ~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~~y~~~~~~~l~~l~~~l~ 238 (239)
T smart00721 175 AEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIEAQLNFHRESYKLLQQLQQQLD 238 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888899999999999999999999999988889999999999999999999999999998875
No 104
>cd07297 PX_PLD2 The phosphoinositide binding Phox Homology domain of Phospholipase D2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD2 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It mediates EGF-dependent insulin secretion and EGF-induced Ras activation by the guanine nucleotide-exchange factor
Probab=99.29 E-value=2e-11 Score=94.45 Aligned_cols=109 Identities=14% Similarity=0.152 Sum_probs=82.1
Q ss_pred cEEEEEcCceEeCCCCcce--EEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccc-----c
Q 043025 25 YLSVSVTDPVKLGNGVQAY--ISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAV-----E 97 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~--~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~-----~ 97 (403)
.|.+.|.+.+..+.|...+ .+|+|.++- ..-.|.|.|||.+|..||+.|..--...-+||+|..... .
T Consensus 3 pi~~~V~~~er~~s~s~~~~~~lYtIeltH-----G~F~W~IkRryKhF~~LHr~L~~~k~~~~~~P~~~~~~~r~~~~~ 77 (130)
T cd07297 3 PVTAKVENTERYTTGSKVHVCTLYTVRLTH-----GEFTWTVKKKFKHFQELHRDLYRHKVMLSFLPLGRFAIQHRQQLE 77 (130)
T ss_pred ceEEEEEEEEEeecccccccceeEEEEEec-----CceEEEEEehhhhHHHHHHHHHHHHHhhhcCCchhhhhhhccccc
Confidence 4688999999887766555 799999974 236799999999999999999863334445565522210 0
Q ss_pred c--------cCCC---HHHHHHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 98 K--------FRFS---AEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 98 ~--------~~~~---~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
. .+-+ .+-+..|+++||.||+.|+..|..++.+...+||+.
T Consensus 78 ~~~~~mP~LP~~~~~~~~~~~sr~kqLE~YLn~LL~~~~YRn~~atleFLeV 129 (130)
T cd07297 78 GLTEEMPSLPGTDREASRRTASKPKYLENYLNNLLENSFYRNYHAMMEFLAV 129 (130)
T ss_pred cccCcCCCCCCCCchhhhhhhhHHHHHHHHHHHHhcchhhcCChhheeeeec
Confidence 0 0111 345677999999999999999999999999999974
No 105
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.
Probab=99.27 E-value=6.9e-09 Score=90.21 Aligned_cols=183 Identities=14% Similarity=0.136 Sum_probs=146.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-HHHH
Q 043025 186 SNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVK-LQRE 264 (403)
Q Consensus 186 ~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~-~~~~ 264 (403)
.|+.|......+..++..++.+.+-+......-+.+......++..+..+.....+........+..+...+... ..+.
T Consensus 3 ~D~~fd~~e~rF~~~e~~~~~l~kd~k~Y~~~~~~~~~~~~~~~~~~~d~y~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 82 (195)
T cd07589 3 KDKEFDELEKKFGSLEKQVQLVVRNVELYLQHVQESVLVKVLALEVVLDLYPSNHPRLESKWERFRRVVRGISSKALPEF 82 (195)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 388999999999999999999999888888888887777777777777776544332222233444444444333 3445
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHH
Q 043025 265 AHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTR 344 (403)
Q Consensus 265 ~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~ 344 (403)
.......+..|+..+..++..++.+++.|..++.+|....+..++ +.+++.+++.+++
T Consensus 83 ~~~i~~~V~~Pl~~~~~~~~~~~k~I~KR~~KllDYdr~~~~~~k----------------------~~k~e~~l~~a~~ 140 (195)
T cd07589 83 KSRVRKLVIEPLSSLLKLFSGPQKLIQKRYDKLLDYERYKEKKER----------------------GGKVDEELEEAAN 140 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhccHHHHHHHHHh----------------------hcchHHHHHHHHH
Confidence 667778899999999999999999999999999999988765432 1235677888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 345 RFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAW 390 (403)
Q Consensus 345 ~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~W 390 (403)
.|+.++..++.||++|..-+..-+..+|.+|+..|..++..+....
T Consensus 141 ~y~~lN~~L~~ELP~l~~~~~~~l~~~~~s~~~~Q~~~~~~~~~~~ 186 (195)
T cd07589 141 QYEALNAQLKEELPKFNQLTAQLLETCLKSFVELQRDLYDTLLKRA 186 (195)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999887653
No 106
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=8.9e-09 Score=97.05 Aligned_cols=199 Identities=12% Similarity=0.131 Sum_probs=157.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 043025 185 ESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQRE 264 (403)
Q Consensus 185 e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~ 264 (403)
..|+.|+.....+..++..-+.|.+-+.+....-+.+...-..|..++..+..+.... ...+.. .++.......+.
T Consensus 27 TkD~~FE~~~~~f~~~e~e~~kLqkd~k~y~~av~am~~a~~~l~e~l~eiy~p~~~g-~~~l~~---v~~~~d~l~~d~ 102 (460)
T KOG3771|consen 27 TKDEQFEQEERNFNKQEAEGKRLQKDLKNYLDAVRAMLAASKKLAESLQEIYEPDWPG-RDYLQA---VADNDDLLWKDL 102 (460)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc-HHHHHH---HHHHHHHHHHHH
Confidence 3489999999999999999999999999888888888888888888888777665321 122222 233334445566
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHH
Q 043025 265 AHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTR 344 (403)
Q Consensus 265 ~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~ 344 (403)
...+...+..+|..|..++..++..+..|..++++|..+.+.+++.++. +.... ..+.+++.+++.++.
T Consensus 103 ~~~l~d~vl~pl~~~~~~fpdik~~i~KR~~Kl~DyD~~r~~~~kvq~~----k~kd~-------~k~~KAeeEl~~Aq~ 171 (460)
T KOG3771|consen 103 DQKLVDQVLLPLDTYLGQFPDIKKAIAKRGRKLVDYDSARHSFEKLQAK----KKKDE-------AKLAKAEEELEKAQQ 171 (460)
T ss_pred HHHHHHhhhhhHHHhhhhchhHHHHHHhhcchhhhhHHHHHHHHHHHHh----cCCCh-------hhhHHHHHHHHHHHH
Confidence 6677888999999999999999999999999999999998777654333 22223 334447788888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043025 345 RFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLE 398 (403)
Q Consensus 345 ~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~ 398 (403)
.|+..+..++.||+.+...|..-|...|+.+...|+.||.++..+..++-..+.
T Consensus 172 ~fE~lN~~L~eELP~L~~sRv~f~vp~Fqsl~~~q~vf~~Emskl~~~L~~v~~ 225 (460)
T KOG3771|consen 172 VFEELNNELLEELPALYSSRVGFFVPTFQSLFNLQLVFHKEMSKLYKNLYDVLD 225 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999666665554443
No 107
>cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=99.20 E-value=1.2e-10 Score=86.04 Aligned_cols=85 Identities=15% Similarity=0.265 Sum_probs=71.6
Q ss_pred EEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHhcC-
Q 043025 45 SYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASH- 123 (403)
Q Consensus 45 ~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~i~~R~~~L~~fl~~~~~~- 123 (403)
.|.|.+... ++....|.|+|.+|..||.+|+..||...+|.||.+-..+ ..+. -++|.+.|+.||+.|++.
T Consensus 14 lY~i~V~~s----d~~~t~v~Rs~eeF~eLH~~L~~~FP~~~LP~fP~~~~~~--~~~~--~~~R~~~L~~Yl~~Ll~~~ 85 (101)
T cd06896 14 LYLVQVTQS----CNLVSLTEKSFEQFSELHSQLQKQFPSLALPEFPHWWHLP--FTDS--DHKRVRDLNHYLEQLLSGS 85 (101)
T ss_pred EEEEEEEEe----CCCcceeeecHHHHHHHHHHHHHHCccccccCCCCccccC--cccH--HHHHHHHHHHHHHHHHccC
Confidence 588888754 3467889999999999999999999999999999997665 2333 367999999999999976
Q ss_pred ccccCChhhhcccc
Q 043025 124 PELQQSEDLKTFLQ 137 (403)
Q Consensus 124 ~~l~~~~~~~~FL~ 137 (403)
|.+++|+.+..|+.
T Consensus 86 ~eVa~sd~v~sFF~ 99 (101)
T cd06896 86 REVANSDCVLSFFL 99 (101)
T ss_pred HHHhcchHHHHHhh
Confidence 58999999988874
No 108
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.17 E-value=7e-11 Score=105.26 Aligned_cols=100 Identities=26% Similarity=0.364 Sum_probs=75.1
Q ss_pred EcCceEeCC-CCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHHHHH
Q 043025 30 VTDPVKLGN-GVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEM 108 (403)
Q Consensus 30 V~~~~~~~~-~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~i~~ 108 (403)
|+.|...++ ..+.|++|.|.++. ...+|.|.|||+||..||+.|..... +.---||||+.+| +..+.|+|+
T Consensus 13 ~~~~~~~~~~~~~~~t~y~i~v~~-----g~~ew~v~~ry~df~~lheklv~e~~-i~k~llppkk~ig--~~~~s~~e~ 84 (490)
T KOG1259|consen 13 VTVPKFSNESSSGGVTYYDIKVRV-----GKVEWLVERRYRDFANLHEKLVGEIS-ISKKLLPPKKLVG--NKQPSFLEQ 84 (490)
T ss_pred ccccccccccccCceEEEEEEEEe-----cceeeeehhhhhHHHHHHHHhhhhhe-eccccCCchhhcC--CCChhHHHH
Confidence 334444442 34689999999986 45789999999999999999986542 3344789999999 899999999
Q ss_pred HHHHHHHHHHHHhcCccccCChhhhcccc
Q 043025 109 RRQGLDLFVNRIASHPELQQSEDLKTFLQ 137 (403)
Q Consensus 109 R~~~L~~fl~~~~~~~~l~~~~~~~~FL~ 137 (403)
|+..|+-||+.++.--.-..-..+-.||.
T Consensus 85 r~~~leiylq~ll~~f~~~~pr~la~fl~ 113 (490)
T KOG1259|consen 85 RREQLEIYLQELLIYFRTELPRALAEFLD 113 (490)
T ss_pred HHHHHHHHHHHHHHHccccCHHHHHHHhc
Confidence 99999999999885322122234445554
No 109
>KOG3784 consensus Sorting nexin protein SNX27 [General function prediction only; Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=8.8e-10 Score=101.31 Aligned_cols=100 Identities=24% Similarity=0.466 Sum_probs=88.4
Q ss_pred EcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHHHHHH
Q 043025 30 VTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMR 109 (403)
Q Consensus 30 V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~i~~R 109 (403)
|+++..-. +...|++|.|++. +.+.+.+||+.+..||..|..++-+..+|++|+|..|. +++.-++.|
T Consensus 5 v~~t~~~~-~~~~ytaynih~n--------G~~~~~~r~s~~~~l~~~lr~~~~~~~~p~~p~k~~f~---L~~~~~~~r 72 (407)
T KOG3784|consen 5 VPDTSYLT-SLERYTAYNIHIN--------GRQHGSVRYSQLVELHEQLKKHFYDYCLPQFPPKKLFK---LTPQQLDSR 72 (407)
T ss_pred ccchhhcc-Ccccccceeeeec--------ceeEEEEehHHHHhHHHHHHHHhhcccCCCCCcccccC---CChhhhHHH
Confidence 34443333 6679999999985 56789999999999999999999999999999999996 899999999
Q ss_pred HHHHHHHHHHHhcCccccCChhhhcccccChh
Q 043025 110 RQGLDLFVNRIASHPELQQSEDLKTFLQADEE 141 (403)
Q Consensus 110 ~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~ 141 (403)
|..||.||+.++++|.++.+..+..||.....
T Consensus 73 r~~leqylqa~~q~~~l~~s~~~~~fL~~~q~ 104 (407)
T KOG3784|consen 73 RRGLEQYLQAVCQDPVLARSELVQKFLMRAQP 104 (407)
T ss_pred HHHHHHHHHHHhcCccccchhhhhHHHHhccc
Confidence 99999999999999999999999999987664
No 110
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=98.86 E-value=3.6e-06 Score=75.45 Aligned_cols=202 Identities=12% Similarity=0.133 Sum_probs=126.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHH
Q 043025 186 SNPEYEKLKHYIFELENHLAEAQKHA---------YRLVKRHRELGESLSDFGKAAKLLGAC--EGDALGKAFSELGMKS 254 (403)
Q Consensus 186 ~d~~f~~~~~~i~~le~~l~~l~k~~---------~~l~k~~~~l~~~~~~l~~~~~~l~~~--e~~~L~~~~~~~~~~~ 254 (403)
.++.|.++...++.+...+..+.+.. .+.-++.+ ......||.++..-+.. ..+.++.++..+|.+.
T Consensus 13 l~d~~~~lE~~~d~~k~~~~~~~k~~~~~lq~n~~~~~ekr~r--k~p~~~Lg~~M~~~g~~l~~~s~lg~~L~~~g~a~ 90 (244)
T cd07595 13 LSDELLQIEKRVEAVKDACQNIHKKLISCLQGQSGEDKDKRLK--KLPEYGLAQSMLESSKELPDDSLLGKVLKLCGEAQ 90 (244)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCCcHHHHhhhhc--cCcHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 35667666666655555555444421 11112111 11233344444333321 2457899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHH
Q 043025 255 EALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERAN---AFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIE 331 (403)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~---~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~ 331 (403)
..++.....+-......|++||..++. ..++++.+.|.+ .-.+|..+..++.+.+..-. ......|+..++.+
T Consensus 91 ~~ia~~~~~~d~~i~~~fl~pL~~~le--~dik~i~k~RKkLe~~RLd~D~~k~r~~ka~k~~~--~~~~~~K~~~l~eE 166 (244)
T cd07595 91 NTLARELVDHEMNVEEDVLSPLQNILE--VEIPNIQKQKKRLSKLVLDMDSARSRYNAAHKSSG--GQGAAAKVDALKDE 166 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccc--ccccccccchHHHH
Confidence 999999888888888999999998885 123334444433 34466666555443211000 01124566666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043025 332 YKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEACS 401 (403)
Q Consensus 332 i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~~ 401 (403)
+++++ .+|+.-+..+...+..|-. ++.++-..|.+|+..|+.||++++++.+.+++.++...
T Consensus 167 ~e~ae-------~k~e~~~e~~~~~M~~~l~-~E~e~~~~l~~lv~aQl~YH~~a~e~L~~l~~~l~~~~ 228 (244)
T cd07595 167 YEEAE-------LKLEQCRDALATDMYEFLA-KEAEIASYLIDLIEAQREYHRTALSVLEAVLPELQEQI 228 (244)
T ss_pred HHHHH-------HHHHHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555 4455555555666666653 47899999999999999999999999999999998654
No 111
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=98.83 E-value=9e-06 Score=71.20 Aligned_cols=191 Identities=13% Similarity=0.125 Sum_probs=126.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH------HHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHH
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKR---HRE------LGESLSDFGKAAKLLGAC--EGDALGKAFSELGMKSE 255 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~---~~~------l~~~~~~l~~~~~~l~~~--e~~~L~~~~~~~~~~~~ 255 (403)
+..|.++...++.....+..+.+.....+.. .+. -......||.++..-+.. +.+.++.++..+|.+..
T Consensus 6 ~ddf~~le~~~d~~~~~~~~l~~~~~~y~~~l~k~~~~g~~k~k~~p~~~Lg~~M~~~g~~lg~dS~~G~aL~~~G~a~~ 85 (215)
T cd07593 6 SEEFLELEKEIELRKEGMERLHRSTEAYVEYLSKKKPLLDDKDKCLPVEALGLVMINHGEEFPQDSEYGSCLSKLGRAHC 85 (215)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccccCChHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH
Confidence 4566666666666555555555544444431 110 011244455544444432 24578999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHH
Q 043025 256 ALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANA---FRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEY 332 (403)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~---~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i 332 (403)
+++.+..........+|..||..+.. -++++-+.|.++ -.+|..+..++.+. + +++
T Consensus 86 kia~~q~~f~~~~~~~~l~pL~~~l~---~~k~i~k~RKkLe~rRLdyD~~ksk~~ka-------k--~~~--------- 144 (215)
T cd07593 86 KIGTLQEEFADRLSDTFLANIERSLA---EMKEYHSARKKLESRRLAYDAALTKSQKA-------K--KED--------- 144 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------c--ccc---------
Confidence 99998887778888889998888774 345555555433 23555544433322 1 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 333 KELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEA 399 (403)
Q Consensus 333 ~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~ 399 (403)
..++.+++.++.+|+.-++.+...+..|.. ...+.-..|.+|++.|+.||+++.++.+.+....-+
T Consensus 145 ~~~eeElr~Ae~kfees~E~a~~~M~~i~~-~e~e~~~~L~~lv~AQl~Yh~q~~e~L~~l~~~~~~ 210 (215)
T cd07593 145 SRLEEELRRAKAKYEESSEDVEARMVAIKE-SEADQYRDLTDLLDAELDYHQQSLDVLREVRQSWPS 210 (215)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 235667777788888888888888888864 357888999999999999999999999999876544
No 112
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.81 E-value=2.6e-05 Score=68.09 Aligned_cols=193 Identities=12% Similarity=0.095 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 197 IFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGA-----CE-GDALGKAFSELGMKSEALSVKLQREAHQLLM 270 (403)
Q Consensus 197 i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~-----~e-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (403)
+..++..++.|.+....++...+.++.+...|+..+..++. +. .+.+..++..++.++..+.............
T Consensus 11 ~~~L~~~~~kL~K~c~~~~~a~~~~~~A~~~F~~~L~ef~~~~f~~~~dDe~~~~~l~kFs~~l~El~~~~~~L~~q~~~ 90 (215)
T cd07601 11 ALQLSSYMNQLLQACKRVYDAQNELKSATQALSKKLGEYEKQKFELGRDDEILVSTLKQFSKVVDELSTMHSTLSSQLAD 90 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555555531 11 2234468899999999999988888888888
Q ss_pred hhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccC-cchHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 271 NFEEPLKDYV-RAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTR-SDKVGEAEIEYKELKAESEDSTRRFET 348 (403)
Q Consensus 271 ~~~e~l~~~~-~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~-~~ki~~l~~~i~~~~~~~~~~~~~~~~ 348 (403)
.+..||..++ ..+..+|+.=+.=+++..+|+.+..+. .++...+ ..++ ..++..++...+..|..
T Consensus 91 ~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~~d~al~K~-------~~l~k~k~~~~~------~~Ea~~~l~~~R~~F~~ 157 (215)
T cd07601 91 TVLHPISQFMESDLAEIMTLKELFKAASNDHDGVLSKY-------SRLSKKRENTKV------KIEVNDEVYACRKKQHQ 157 (215)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHH-------hhCCcCCCchHH------HHHHHHHHHHHHHHHHH
Confidence 8999999887 567777764333333444555543322 2222222 1111 23667778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhccC
Q 043025 349 IVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWR-TLLPKLEACSS 402 (403)
Q Consensus 349 i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We-~~~~~~~~~~~ 402 (403)
..-....-|...+..|..+|...|..|...++.|+++-.++.. ++-|-+..++.
T Consensus 158 ~~ldYv~~ln~iq~kKk~e~Le~ll~~m~A~~tff~qG~ell~~~~~pf~~~v~~ 212 (215)
T cd07601 158 TAMNYYCALNLLQYKKTTALLEPMIGYLQAQIAFFKMGPEMFTRQTEEFLSDINT 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9888888999999999999999999999999999999999986 88887777654
No 113
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.79 E-value=3.5e-05 Score=66.87 Aligned_cols=192 Identities=12% Similarity=0.087 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 191 EKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE--GDALGKAFSELGMKSEALSVKLQREAHQL 268 (403)
Q Consensus 191 ~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e--~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (403)
.+...-+..|+..|..+.+....+++.-+.+.++...|+..+..+...- .+.+++++..+++++..+........+..
T Consensus 5 ~~~E~~~~~le~~l~kl~K~~~~~~d~g~~~~~a~~~F~~~l~d~~~~~~gd~~i~~~L~kF~~~l~ei~~~~~~l~~q~ 84 (200)
T cd07637 5 DEVETDVVEIEAKLDKLVKLCSGMIEAGKAYATTNKLFVSGIRDLSQQCKKDEMISECLDKFGDSLQEMVNYHMILFDQA 84 (200)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666666666666666666667777777777666665422 34577888999999999988888888888
Q ss_pred HHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 269 LMNFEEPLKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFE 347 (403)
Q Consensus 269 ~~~~~e~l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~ 347 (403)
...+.+||..++. .+..+|+.=+.=++...+|+.+..+ ...++..++ .++.++..++..++..|.
T Consensus 85 e~~l~~pL~~F~k~dL~~~KE~rK~Fdk~se~yd~al~k-------~~~~k~kk~-------~~l~Ea~~~L~~~Rk~f~ 150 (200)
T cd07637 85 QRSVRQQLHSFVKEDVRKFKETKKQFDKVREDLEIALVK-------NAQAPRHKP-------HEVEEATSTLTITRKCFR 150 (200)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------HhhcCCCCh-------HHHHHHHHHHHHHHHHHH
Confidence 8888999988875 5677776433223333344444332 112221222 345666777888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 348 TIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 348 ~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~ 396 (403)
..+-.....+...+..|..+|...|..|...++.|+++-.++..++.|.
T Consensus 151 ~asLdyv~~ln~iq~kKk~e~le~ll~~~~a~~tff~qG~el~~~~~py 199 (200)
T cd07637 151 HLALDYVLQINVLQAKKKFEILDSMLSFMHAQYTFFQQGYSLLHELDPY 199 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Confidence 9988889999999999999999999999999999999999999888664
No 114
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.78 E-value=3.7e-05 Score=66.88 Aligned_cols=191 Identities=13% Similarity=0.063 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 192 KLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGAC--EGDALGKAFSELGMKSEALSVKLQREAHQLL 269 (403)
Q Consensus 192 ~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~--e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (403)
.....++.++..++.+.+....++..-..+..+-..|+.++..++.. +.+.++.++..++..+..+........+...
T Consensus 6 ~~E~~~~~l~~~l~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~~~~d~~i~~~l~kF~~~l~el~~~~~~L~~q~~ 85 (200)
T cd07603 6 QVEADVSELETRLEKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDYFRDDSLVQNCLNKFIQALQEMNNFHTILLDQAQ 85 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555532 2335778899999999999888888888888
Q ss_pred HhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 270 MNFEEPLKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFET 348 (403)
Q Consensus 270 ~~~~e~l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~ 348 (403)
..+.+||..++. .+..+|++=+.=+++..+|+.+..+ ...+.. .| ..++.++...+..++..|..
T Consensus 86 ~~i~~pL~~F~k~dL~~vKE~kk~Fdk~s~~yd~al~k-------~~~~~K---~K----~~~~~Ea~~~L~~~Rk~f~~ 151 (200)
T cd07603 86 RTVSTQLQNFVKEDIKKVKESKKHFEKISDDLDNALVK-------NAQAPR---SK----PQEAEEATNILTATRSCFRH 151 (200)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------HhccCC---CC----HHHHHHHHHHHHHHHHHHHH
Confidence 889999988865 5677776433333344445444332 111211 12 24566677778888888988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 349 IVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 349 i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~ 396 (403)
.+-.....+...+..|..+|...|..|...+..|+++-.+.|+++.|.
T Consensus 152 ~sldyv~~in~iq~kKk~e~le~ll~~~~A~~tff~qG~el~~dl~py 199 (200)
T cd07603 152 TALDYVLQINVLQAKKRHEILSTLLSYMHAQFTFFHQGYDLLEDLEPY 199 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCc
Confidence 888888899999999999999999999999999999999999998764
No 115
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=98.77 E-value=4.2e-05 Score=67.14 Aligned_cols=199 Identities=17% Similarity=0.152 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 193 LKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE----GDALGKAFSELGMKSEALSVKLQREAHQL 268 (403)
Q Consensus 193 ~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e----~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (403)
+.+.++.++..+.++.+....++..-..+..+...|+.++..++.+- ...++.++..++.....+...........
T Consensus 7 lee~l~~~~~~l~Kl~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF~~~l~El~~~~~~L~~~~ 86 (215)
T cd07604 7 LEESLEGDRVGLQKLKKAVKAIHNSGLAHVENELQFAEALEKLGSKALSREEEDLGAAFLKFSVFTKELAALFKNLMQNL 86 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555666666666665666666666666666666432 12478889999999999999888888888
Q ss_pred HHhhhHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHH---HHHHHHHHHHHHHHHHH
Q 043025 269 LMNFEEPLKDYVRA-VQSIK-ATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVG---EAEIEYKELKAESEDST 343 (403)
Q Consensus 269 ~~~~~e~l~~~~~~-~~s~k-~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~---~l~~~i~~~~~~~~~~~ 343 (403)
...+..||..++.. +..++ ++=+.=+++..+|+.+..++ ++.+... .+-. ..+....++...++..+
T Consensus 87 ~~~i~~pL~~f~k~dL~~~k~e~KK~fdK~s~~ye~~~~k~-------~k~Kk~~-~~~~~~~r~e~~~~e~~~~l~~~R 158 (215)
T cd07604 87 NNIIMFPLDSLLKGDLKGSKGDLKKPFDKAWKDYETKASKI-------EKEKKQL-AKEAGMIRTEITGAEIAEEMEKER 158 (215)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------Hhccchh-hhhhhhcchhhhhhhHHHHHHHHH
Confidence 88899999988876 66666 54444444555565553332 3322100 0000 01111245667788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 344 RRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEA 399 (403)
Q Consensus 344 ~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~ 399 (403)
..|....-...--+...+..+..+|...|..|...|+.|+++-.+..+.+.|.++.
T Consensus 159 ~~F~~~~~~yv~~l~~lq~kKk~e~Le~ll~~~~Aq~~fF~~G~~ll~~l~p~~~~ 214 (215)
T cd07604 159 RMFQLQMCEYLIKVNEIKTKKGVDLLQHLVEYYHAQNSYFQDGLKVIEHFRPYIEK 214 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 88888887777888889999999999999999999999999999999999998864
No 116
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.72 E-value=6.2e-05 Score=65.02 Aligned_cols=192 Identities=15% Similarity=0.136 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 191 EKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGAC--EGDALGKAFSELGMKSEALSVKLQREAHQL 268 (403)
Q Consensus 191 ~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~--e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (403)
..+...+..|+..+..+.+....+++...+++.+...|+..+..++.. ..+.++..+..+++++..+........+..
T Consensus 5 ~~~E~d~~~Le~~l~Kl~K~~~~~~dag~~~~~a~~~F~~~l~d~~~~~~~De~i~~~l~kF~~~l~ei~~~~~~L~~q~ 84 (200)
T cd07638 5 EDVEGDVAELELKLDKLVKLCIGMIDAGKAFCQANKQFMNGIRDLAQYSSKDAVIETSLTKFSDTLQEMINYHTILFDQA 84 (200)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777777777777888888888888888888888877532 223567889999999999988877777777
Q ss_pred HHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 269 LMNFEEPLKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFE 347 (403)
Q Consensus 269 ~~~~~e~l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~ 347 (403)
...+..||..++. .+..+|+.=+ + ++.+.+ +.-..+.|--.....| ..+++++...+..++..|.
T Consensus 85 ~~~l~~~L~~F~k~dl~~vke~kk-~------FdK~s~---~~~~aL~K~~~~~k~k----~~e~eEa~~~l~~~r~~F~ 150 (200)
T cd07638 85 QRSIKAQLQTFVKEDLRKFKDAKK-Q------FDKVSE---EKENALVKNAQVQRNK----QHEVEEATNILTATRKCFR 150 (200)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH-H------HHHHhH---HHHHHHHHhccCCcCc----hHHHHHHHHHHHHHHHHHH
Confidence 7888888888765 3555555321 1 111111 1122223321111112 2566778888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 348 TIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 348 ~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~ 396 (403)
...-....-|...+..|..+|...|..|+..++.|+++-.++..++-|.
T Consensus 151 ~~~ldYv~~ln~vq~kKkfe~le~ll~~m~a~~tff~qG~el~~d~~py 199 (200)
T cd07638 151 HIALDYVLQINVLQSKRRSEILKSMLSFMYAHLTFFHQGYDLFSELGPY 199 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999998887664
No 117
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.71 E-value=4.1e-05 Score=66.02 Aligned_cols=191 Identities=13% Similarity=0.079 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 192 KLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGA-C-EGDALGKAFSELGMKSEALSVKLQREAHQLL 269 (403)
Q Consensus 192 ~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~-~-e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (403)
+...-+..++..++.|.+....++..-+++..+-..|+..+..++. + ..+.++.++..++..+..+........+...
T Consensus 6 ~~E~~~~~le~~l~kl~K~~k~~~~agk~~~~a~~~F~~~L~~f~~~~~~D~~i~~~l~kFs~~l~ei~~~~~~Ll~~~~ 85 (200)
T cd07639 6 EVEAEVSELETRLEKLVKLGSGMLEGGRHYCAASRAFVDGLCDLAHHGPKDPMMAECLEKFSDGLNHILDSHAELLEATQ 85 (200)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666666666666666666666666666666666664 2 2345778899999999888777777666666
Q ss_pred HhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 270 MNFEEPLKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFET 348 (403)
Q Consensus 270 ~~~~e~l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~ 348 (403)
..+..||..++. .+..+|+.=+.=++....|+.+..+. .++. ..|. .+++++...+...+..|..
T Consensus 86 ~~l~~~L~~F~k~dl~~vKe~kK~FdK~s~~~d~al~K~-------~~~~---k~k~----~e~~Ea~~~l~~~R~~F~~ 151 (200)
T cd07639 86 FSFKQQLQLLVKEDLRGFRDARKEFERGAESLEAALQHN-------AETP---RRKA----QEVEEAAAALLGARATFRD 151 (200)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhhHhhcchhHHHHHHHH-------hhcc---ccch----HHHHHHHHHHHHHHHHHHH
Confidence 777888887765 46667764333333444555543221 1111 1121 3667788888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 349 IVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 349 i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~ 396 (403)
..-.....|...+..|..+|...|..|...+..|+++-.++..++-|.
T Consensus 152 ~~ldYV~~in~iq~kKkfefle~ll~~m~a~~tfF~qG~ell~~l~~y 199 (200)
T cd07639 152 RALDYALQINVIEDKKKFDILEFMLQLMEAQASFFQQGHEALSALHQY 199 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 998989999999999999999999999999999999999998887653
No 118
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.70 E-value=7.9e-05 Score=64.74 Aligned_cols=189 Identities=12% Similarity=0.083 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 043025 193 LKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALG-----KAFSELGMKSEALSVKLQREAHQ 267 (403)
Q Consensus 193 ~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~-----~~~~~~~~~~~~~~~~~~~~~~~ 267 (403)
+..-+..++..+..|.+....++...+.++.+-..|+..+..++....+++. .++..++.++..+........+.
T Consensus 6 ~E~~~~~l~~~~~Kl~K~~~~~~~a~~~~~~a~~~Fa~~L~~f~~~~dD~~~~a~gg~~l~kF~~~l~ei~~~~~~L~~q 85 (202)
T cd07606 6 LEGSADELRDRSLKLYKGCRKYRDALGEAYDGDSAFAESLEEFGGGHDDPISVAVGGPVMTKFTSALREIGSYKEVLRSQ 85 (202)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555556666666666666666666666677777766654433333 46889999999998888888888
Q ss_pred HHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc-ccCcchHHHHHHHHHHHHHHHHHHHHH
Q 043025 268 LLMNFEEPLKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLM-LTRSDKVGEAEIEYKELKAESEDSTRR 345 (403)
Q Consensus 268 ~~~~~~e~l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~-~~~~~ki~~l~~~i~~~~~~~~~~~~~ 345 (403)
....+..||..++. .+..+|+.=+.=+++..+|+.+..+. -.+. ..+++. +.+++.++..++..
T Consensus 86 ~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~yd~al~K~-------~~l~k~~k~~~-------~~ea~~~l~~~R~~ 151 (202)
T cd07606 86 VEHMLNDRLAQFADTDLQEVKDARRRFDKASLDYEQARSKF-------LSLTKDAKPEI-------LAAAEEDLGTTRSA 151 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhccccCchHH-------HHHHHHHHHHHHHH
Confidence 88888999988875 46666764333334445555554322 2222 122322 34667777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 346 FETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLP 395 (403)
Q Consensus 346 ~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~ 395 (403)
|....-....-|...+..|..+|...|..|...++.|+++-.++..++.|
T Consensus 152 F~~~~ldyv~~ln~~q~kKk~e~le~ll~~m~A~~tFF~qG~ell~~l~p 201 (202)
T cd07606 152 FETARFDLMNRLHAADARKRVEFLERLSGSMDAHLAFFKSGYELLRQLEP 201 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 88888888888999999999999999999999999999999998877654
No 119
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=98.66 E-value=2.5e-05 Score=69.08 Aligned_cols=152 Identities=16% Similarity=0.199 Sum_probs=99.5
Q ss_pred HHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 043025 227 DFGKAAKLLGAC--EGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERAN---AFRQQC 301 (403)
Q Consensus 227 ~l~~~~~~l~~~--e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~---~~~~~~ 301 (403)
.||.++...+.. +.+.++.++..+|.+..+++.....+.......|++||..+.. ..++++-+.|.+ .-.+|.
T Consensus 73 ~Lg~~M~~~g~~lg~~S~~g~aL~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~--~dik~i~k~RKkLe~rRLd~D 150 (229)
T cd07594 73 QLGQAMIEAGNDFGPGTAYGSALIKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLE--GDMKTISKERKLLENKRLDLD 150 (229)
T ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 455555444432 2357899999999999999999888888888999999998876 123333333432 233555
Q ss_pred HHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 302 ELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQAR 381 (403)
Q Consensus 302 ~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~ 381 (403)
.+..++. + ...+++...+ +.+++.++.+|+.-++....=+..+.. ...+....|.+|+..|+.
T Consensus 151 ~~k~r~~-------k--Ak~~~~~~~~-------e~elr~Ae~kF~~~~E~a~~~M~~i~~-~~~~~~~~L~~lv~AQl~ 213 (229)
T cd07594 151 ACKTRVK-------K--AKSAEAIEQA-------EQDLRVAQSEFDRQAEITKLLLEGISS-THANHLRCLRDFVEAQMT 213 (229)
T ss_pred HHHHHHh-------h--cCCccchhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHH
Confidence 5544332 2 1234443333 445555556666655555544444442 235677889999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 043025 382 LASSIADAWRTLLPKL 397 (403)
Q Consensus 382 ~~~~~~~~We~~~~~~ 397 (403)
||+++.+..+++.+.+
T Consensus 214 Yh~q~~e~L~~l~~~l 229 (229)
T cd07594 214 YYAQCYQYMDDLQRQL 229 (229)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999987653
No 120
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=98.65 E-value=3.3e-05 Score=68.85 Aligned_cols=148 Identities=16% Similarity=0.182 Sum_probs=108.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHh
Q 043025 241 DALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANA---FRQQCELAETMKLKEINLDKL 317 (403)
Q Consensus 241 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~---~~~~~~~~~~l~~k~~~l~kl 317 (403)
+.++.++..+|.+...++.....+-......|++||..+... .++++.+.|.+. ..+|..+...+.+.....
T Consensus 77 s~~g~aL~~~gea~~kla~~~~~~d~~ie~~fl~PL~~~le~--dlk~I~K~RkkLe~~RLD~D~~K~r~~~a~~~~--- 151 (246)
T cd07618 77 SLIGKMLDTCGDAENKLAFELSQHEVLLEKDILDPLNQLAEV--EIPNIQKQRKQLAKLVLDWDSARGRYNQAHKSS--- 151 (246)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHhHHhhHHHHHHHHHhccccC---
Confidence 468889999999999999876666666777999999988773 344555555442 346666555443321110
Q ss_pred ccc----CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 318 MLT----RSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTL 393 (403)
Q Consensus 318 ~~~----~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~ 393 (403)
+. ...|+..++++++++..+++.+++.+.. ++-.|- .+..++-..|.+|++.|++||++.+++.+.+
T Consensus 152 -~~~~~~~~~K~~~l~ee~e~a~~k~E~~kD~~~~-------dm~~~l-~~e~e~~~~l~~lv~aQ~eYHr~a~e~Le~~ 222 (246)
T cd07618 152 -GTNFQAMPSKIDMLKEEMDEAGNKVEQCKDQLAA-------DMYNFA-SKEGEYAKFFVLLLEAQADYHRKALAVIEKV 222 (246)
T ss_pred -ccccccccchhhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHH-HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1467777888888888888877777655 555554 6789999999999999999999999999999
Q ss_pred HHHhhhccC
Q 043025 394 LPKLEACSS 402 (403)
Q Consensus 394 ~~~~~~~~~ 402 (403)
+|.+++.+.
T Consensus 223 ~p~i~~~~~ 231 (246)
T cd07618 223 LPEIQAHQD 231 (246)
T ss_pred HHHHHHHHH
Confidence 999998763
No 121
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.65 E-value=3.5e-05 Score=68.50 Aligned_cols=201 Identities=14% Similarity=0.138 Sum_probs=123.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HH-----HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVK---------RH-----RELGESLSDFGKAAKLLGACEGDALGKAFSELGM 252 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k---------~~-----~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~ 252 (403)
|+.|.++...++.....+.++.+.....+. +. -.|+..|.+.|..| .+.+.++.++..+|.
T Consensus 14 d~~~~~le~r~D~~k~~~~~i~kk~~~~LQpnp~~r~ekr~~k~P~~~L~q~M~~~g~el-----g~~s~lg~aL~~~ge 88 (248)
T cd07619 14 SEDLLQVEKRLELVKQVSHSTHKKLTACLQGQQGVDADKRSKKLPLTTLAQCMVEGAAVL-----GDDSLLGKMLKLCGE 88 (248)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhccCCCHHHHHHHHHHHHHhc-----CCCchHHHHHHHHHH
Confidence 667777777666655555555444333321 11 23555555555444 224579999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHhcc--cCcchHHH
Q 043025 253 KSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERAN---AFRQQCELAETMKLKEINLDKLML--TRSDKVGE 327 (403)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~---~~~~~~~~~~~l~~k~~~l~kl~~--~~~~ki~~ 327 (403)
+...++.....+-.....+|+.||..+.. ..++.+.+.|.+ +-.+|..+...+...........+ ....+.+.
T Consensus 89 a~~kla~a~~~~d~~i~~~fl~PL~~~le--~dlk~I~k~RK~Le~~RLD~D~~K~r~~~a~~~~~~~~~~~~~~~k~e~ 166 (248)
T cd07619 89 TEDKLAQELILFELQIERDVVEPLYVLAE--VEIPNIQKQRKHLAKLVLDMDSSRTRWQQSSKSSGLSSNLQPTGAKADA 166 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHhhHhhHHHHHHHHHhccccccccccccCCCCccHH
Confidence 99999998888888888999999998876 233444444443 234555554443221000000000 01234556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043025 328 AEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEACSS 402 (403)
Q Consensus 328 l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~~~ 402 (403)
++.++++++.+++.+++. .-.++-.|-. ++.+.-.-|.+|++.|+.||++.+++.+.+++.+++.+.
T Consensus 167 lr~e~E~ae~~~e~~kd~-------~~~~m~~~l~-~e~e~~~~l~~Lv~AQleYHr~A~eiLe~l~~~i~~~~~ 233 (248)
T cd07619 167 LREEMEEAANRMEICRDQ-------LSADMYSFVA-KEIDYANYFQTLIEVQAEYHRKSLELLQSVLPQIKAHQE 233 (248)
T ss_pred HHHHHHHHHHHHHHHHhh-------hHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666665555544333 3344444543 355566669999999999999999999999999998754
No 122
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=98.64 E-value=0.0002 Score=62.17 Aligned_cols=187 Identities=14% Similarity=0.171 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 196 YIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLG-----ACEG---DALGKAFSELGMKSEALSVKLQREAHQ 267 (403)
Q Consensus 196 ~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~-----~~e~---~~L~~~~~~~~~~~~~~~~~~~~~~~~ 267 (403)
-++.++..++.|.+....++...++++.+...|+..+..++ ..+. ..++..+..+++.+..+........+.
T Consensus 10 ele~l~~~ikkLiK~ck~~i~a~k~~~~a~~~F~~~L~~f~~~~~g~~~tDDe~~i~~~L~kF~~~l~ei~~~r~~L~~q 89 (207)
T cd07602 10 ELERTNKAIKELIKECKNLISATKNLSKAQRSFAQTLQNFKFECIGETQTDDEIEIAESLKEFGRLIETVEDERDRMLEN 89 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555566666666666665555 2211 146788999999999998888888888
Q ss_pred HHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcc-cCcchHHHHHHHHHHHHHHHHHHHHH
Q 043025 268 LLMNFEEPLKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLML-TRSDKVGEAEIEYKELKAESEDSTRR 345 (403)
Q Consensus 268 ~~~~~~e~l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~-~~~~ki~~l~~~i~~~~~~~~~~~~~ 345 (403)
....+..||..+.. .+..+|+.=+.=++.-..|+.+..+ --.+.. .++ .++++++..+..++..
T Consensus 90 ~~~~l~~pL~~F~k~dl~~~ke~kk~FdK~se~~~~al~k-------~~~lsk~kk~-------~~~~ea~~~l~~~r~~ 155 (207)
T cd07602 90 AEEQLIEPLEKFRKEQIGGAKEEKKKFDKETEKFCSSLEK-------HLNLSTKKKE-------NQLQEADAQLDMERRN 155 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhccCCCCCc-------hHHHHHHHHHHHHHHH
Confidence 88888888888876 4666666433222333344444322 111211 112 3455566777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 346 FETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 346 ~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~ 396 (403)
|....-....-|...+..|..+|...|..|...++.|+++-.++..++.|.
T Consensus 156 f~~~~l~Yv~~l~~vq~rKkfefle~ll~~m~a~~tff~qG~el~~d~~py 206 (207)
T cd07602 156 FHQASLEYVFKLQEVQERKKFEFVETLLSFMYGWLTFYHQGHEVAKDFKPY 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Confidence 988888888899999999999999999999999999999999998887663
No 123
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=98.60 E-value=2.3e-05 Score=68.80 Aligned_cols=146 Identities=14% Similarity=0.159 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHH---HHH
Q 043025 226 SDFGKAAKLLGAC--EGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYV-RAVQSIKATIAERANA---FRQ 299 (403)
Q Consensus 226 ~~l~~~~~~l~~~--e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~-~~~~s~k~~l~~R~~~---~~~ 299 (403)
..||.++...+.. +.+.++.++..+|.+..+++.....+.......|++||..+. ..+ +++.+.|.+. -.+
T Consensus 67 ~~Lg~~M~~~G~~lg~dS~~G~aL~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le~di---k~i~k~RKkLe~rRLd 143 (223)
T cd07614 67 GLLGETMIRYGKELGDESNFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCDKDL---KEIQHHLKKLEGRRLD 143 (223)
T ss_pred hHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3344444443321 235789999999999999999988888888899999999886 333 3333333322 234
Q ss_pred HHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 300 QCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQ 379 (403)
Q Consensus 300 ~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~q 379 (403)
|..+.. ++ +|.. +.++..+..+|+.-++.+...+..|.. ...+.-+.|.+|++.|
T Consensus 144 yD~~K~-------r~--------~k~~---------eeelr~a~ekFees~E~a~~~M~~il~-~e~e~~~~L~~lveAQ 198 (223)
T cd07614 144 FDYKKK-------RQ--------GKIP---------DEELRQAMEKFEESKEVAETSMHNLLE-TDIEQVSQLSALVDAQ 198 (223)
T ss_pred HHHHHH-------cC--------CCCc---------hHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHH
Confidence 443221 11 1111 245556666788888777777777764 4678899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 043025 380 ARLASSIADAWRTLLPKLEA 399 (403)
Q Consensus 380 i~~~~~~~~~We~~~~~~~~ 399 (403)
+.||++++++.+++...+..
T Consensus 199 l~Yh~qa~eiL~~l~~~l~~ 218 (223)
T cd07614 199 LDYHRQAVQILDELAEKLKR 218 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988763
No 124
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im
Probab=98.59 E-value=0.00026 Score=60.79 Aligned_cols=194 Identities=12% Similarity=0.109 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 190 YEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLL 269 (403)
Q Consensus 190 f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (403)
++.--+.++.....+..+.+.++++..+...++.+...||..|..+|.-++ .+...+..++.+...++..-.
T Consensus 4 LeaklE~L~~~q~~Y~~ll~~~~~l~~~~~~l~qtq~~Lg~~f~~l~~k~p-~l~~af~~~aet~k~l~kng~------- 75 (201)
T cd07660 4 LEAQIEVLRDTQRKYESVLRLARALASQFYQMLQTQKALGDAFADLSQKSP-ELQEEFTYNAETQKLLCKNGE------- 75 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHhHH-------
Confidence 344445566667778888899999999999999999999999999998664 457777777776666554322
Q ss_pred HhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCc--chHHHHHHHHHHHHHHHHHHHHHH
Q 043025 270 MNFEEPLKDYVRAVQSIKA-TIAERANAFRQQCELAETMKLKEINLDKLMLTRS--DKVGEAEIEYKELKAESEDSTRRF 346 (403)
Q Consensus 270 ~~~~e~l~~~~~~~~s~k~-~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~--~ki~~l~~~i~~~~~~~~~~~~~~ 346 (403)
.+..+|..++..+.-+.+ ++.+-..-+..|+.+.-+.......++.+...+. +.+. .+..+....+.++.+|
T Consensus 76 -~Ll~al~~f~s~l~T~~~kai~DT~lTI~~ye~aR~EYdayr~D~ee~~~~~~~~~~l~----r~~~~q~~~~~~k~kf 150 (201)
T cd07660 76 -TLLGALNFFVSSLNTLVNKTMEDTLMTVKQYESARIEYDAYRNDLEALNLGPRDAATSA----RLEEAQRRFQAHKDKY 150 (201)
T ss_pred -HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhHhHHHHhccHHHcccCCCccchHh----hHHHHHHHHHHHHHHH
Confidence 344455555444333221 1222222233444444444433445555442221 1222 2344666677888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 347 ETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 347 ~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~ 396 (403)
+.....+..=++-++..|..+|..-|.-|......|+..+....+.++.+
T Consensus 151 ~KLR~DV~~Kl~lLeenrv~vm~~QL~~f~~a~~ay~sgn~~~L~~~~~~ 200 (201)
T cd07660 151 EKLRNDVSVKLKFLEENKVKVMHKQLLLFHNAISAYFSGNQKQLEQTLKQ 200 (201)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999988764
No 125
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=98.57 E-value=0.00011 Score=64.96 Aligned_cols=146 Identities=17% Similarity=0.197 Sum_probs=103.7
Q ss_pred HHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 043025 227 DFGKAAKLLGAC--EGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANA---FRQQC 301 (403)
Q Consensus 227 ~l~~~~~~l~~~--e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~---~~~~~ 301 (403)
.||.++...|.. +.+.++.++..+|.+...++.....+.......|++||..+.. ..++++.+.|.+. -.+|.
T Consensus 68 ~Lg~~M~~~g~elg~~S~~G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~--~dik~i~k~RKkLe~rRLdyD 145 (223)
T cd07592 68 LLGEVMLKYGRELGEDSNFGQALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQD--KDLKEINHHRKKLEGRRLDYD 145 (223)
T ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444331 2357899999999999999999888888888999999987642 2233333334332 22343
Q ss_pred HHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 302 ELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQAR 381 (403)
Q Consensus 302 ~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~ 381 (403)
.+.. ++ .|. .+.+++.++.+|+.-++.+...+..|.. ...+.-+.|..|++.|+.
T Consensus 146 ~~k~-------k~--------~k~---------~eeEl~~Ae~kfe~s~E~a~~~M~~il~-~e~e~~~~L~~lveAQl~ 200 (223)
T cd07592 146 YKKR-------KQ--------GKG---------PDEELKQAEEKFEESKELAENSMFNLLE-NDVEQVSQLSALVEAQLD 200 (223)
T ss_pred HHHH-------hc--------ccC---------chHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHH
Confidence 2221 11 111 2466777888888888888888888875 468888999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 043025 382 LASSIADAWRTLLPKLEA 399 (403)
Q Consensus 382 ~~~~~~~~We~~~~~~~~ 399 (403)
||+++.+..+++.+.+..
T Consensus 201 Yh~~~~e~L~~l~~~L~~ 218 (223)
T cd07592 201 YHRQSAEILEELQSKLQE 218 (223)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998863
No 126
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=98.55 E-value=4.4e-05 Score=66.92 Aligned_cols=148 Identities=15% Similarity=0.193 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---
Q 043025 220 ELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANA--- 296 (403)
Q Consensus 220 ~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~--- 296 (403)
-||..|.+.|..|. +.+.++.++..+|.+..+++.....+.......|.+||..+.. ..++++.+.|.+.
T Consensus 68 ~Lg~~M~~~G~~lg-----~dS~~G~aL~~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l~--~dik~i~k~RKkLe~r 140 (223)
T cd07615 68 LLGDCMLRYGRELG-----EESTFGNALLDVGESMKQMAEVKDSLDINVKQNFIDPLQLLQD--KDLKEIGHHLKKLEGR 140 (223)
T ss_pred HHHHHHHHHHhhCC-----CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 34444444443332 2457899999999999999999888888888999999987642 1233333333322
Q ss_pred HHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 297 FRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFS 376 (403)
Q Consensus 297 ~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a 376 (403)
-.+|..+. .++ ++. .+.+++.++.+|+..++.+...+..|-. ...+.-+.|..|+
T Consensus 141 RLd~D~~K-------~r~--------~k~---------~~eE~~~A~~kfees~E~a~~~M~n~le-~e~e~~~~L~~lv 195 (223)
T cd07615 141 RLDFDYKK-------KRQ--------GKI---------PDEEIRQAVEKFEESKELAERSMFNFLE-NDVEQVSQLSVLI 195 (223)
T ss_pred HHHHHHHH-------HcC--------CCC---------cHHHHHHHHHHHHHHHHHHHHHHHHHHH-cChHHHHHHHHHH
Confidence 22333321 111 111 1556777778888888888888888864 4678889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 043025 377 KGQARLASSIADAWRTLLPKLEA 399 (403)
Q Consensus 377 ~~qi~~~~~~~~~We~~~~~~~~ 399 (403)
+.|+.||++++++.+.+.+.+..
T Consensus 196 ~AQl~Yh~~a~eiL~~l~~~l~~ 218 (223)
T cd07615 196 EAALDYHRQSTEILEDLQSKLQN 218 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998863
No 127
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=98.54 E-value=0.00012 Score=63.16 Aligned_cols=194 Identities=13% Similarity=0.113 Sum_probs=133.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 188 PEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD-ALGKAFSELGMKSEALSVKLQREAH 266 (403)
Q Consensus 188 ~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~-~L~~~~~~~~~~~~~~~~~~~~~~~ 266 (403)
.+.+....+|+++....+.+......+....+..+.++.+|+..+..-+..+.+ .++.++..++..+..+........+
T Consensus 9 ~~l~~t~~~ik~liK~c~~li~A~k~~~~a~~~Fa~sL~~f~~~~igd~~tDde~~i~~~l~~Fs~~l~el~~~~~~L~~ 88 (207)
T cd07634 9 IELERTNKFIKELIKDGSLLIGALRNLSMAVQKFSQSLQDFQFECIGDAETDDEISIAQSLKEFARLLIAVEEERRRLIQ 88 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666666666666666433322211221 4778888899888888887777777
Q ss_pred HHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc-ccCcchHHHHHHHHHHHHHHHHHHHH
Q 043025 267 QLLMNFEEPLKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLM-LTRSDKVGEAEIEYKELKAESEDSTR 344 (403)
Q Consensus 267 ~~~~~~~e~l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~-~~~~~ki~~l~~~i~~~~~~~~~~~~ 344 (403)
.....+..||..++. .+..+|+.=+.=++....|+.+..+- -.+. ..++ .++.++...+...+.
T Consensus 89 ~~~~~l~~pL~~f~k~dl~~vKe~kK~FDK~se~y~~aleK~-------l~l~~~kk~-------~~~~ea~~~l~~~R~ 154 (207)
T cd07634 89 NANDVLIAPLEKFRKEQIGAAKDGKKKFDKESEKYYSILEKH-------LNLSAKKKE-------SHLQRADTQIDREHQ 154 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccchhHHHhHHHHHHHHH-------HhccccCCc-------cHHHHHHHHHHHHHH
Confidence 777778888888765 46677764443344455554443221 1111 1123 345666777777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 345 RFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLP 395 (403)
Q Consensus 345 ~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~ 395 (403)
.|....-....-|...+..|..+|...|..|...+..|+++-.++.+++.|
T Consensus 155 ~F~~~~ldYv~~i~~vq~kKkfefle~ll~~~~A~~tff~qG~el~~dl~p 205 (207)
T cd07634 155 NFYEASLEYVFKIQEVQEKKKFEFVEPLLAFLQGLFTFYHEGYELAQEFAP 205 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC
Confidence 888888888889999999999999999999999999999999999888765
No 128
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=98.53 E-value=0.00049 Score=59.43 Aligned_cols=196 Identities=15% Similarity=0.214 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 195 HYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGK-AAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFE 273 (403)
Q Consensus 195 ~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~-~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (403)
.-+.++...++.+.......+.....++.++.+||. ++ +. +.+.+++++..+|.....+........+.....+.
T Consensus 16 ~~l~~~kk~~k~~~~sG~~yv~~~~~f~~~L~~LG~~~l---~~-dd~~~~~~l~kf~~~~~El~~l~~~L~~~~~~~I~ 91 (215)
T cd07642 16 TVLYKMKKSVKAIHTSGLAHVENEEQYTQALEKFGSNCV---CR-DDPDLGSAFLKFSVFTKELTALFKNLVQNMNNIIT 91 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---CC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555556666666666666666666665 33 11 23467889999999999998888888888888888
Q ss_pred HHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 274 EPLKDYVR-AVQSIK-ATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVR 351 (403)
Q Consensus 274 e~l~~~~~-~~~s~k-~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~ 351 (403)
-|+..++. .+.-+| ++=+.-++++.+|+.+..+.++- +-+..++.-+...+..=.++.+.++.++..|....-
T Consensus 92 ~pl~s~lK~dLr~vK~d~KK~fdK~~~dyE~~~~k~ek~-----~r~~~K~~~~~~~e~~~~E~ae~l~~~R~~fq~~a~ 166 (215)
T cd07642 92 FPLDSLLKGDLKGVKGDLKKPFDKAWKDYETKVTKIEKE-----KKEHAKMHGMIRTEISGAEIAEEMEKERRFFQLQMC 166 (215)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh-----hhccCCccccchhccchhhHHHHHHHHHHHHHHHHH
Confidence 88888887 787887 55444566777777765432221 111122222211111113344455566666666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 352 LMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEA 399 (403)
Q Consensus 352 ~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~ 399 (403)
.-.--+.-.+..+..++-..+..|...|..|+++-.+..+.+-|.++.
T Consensus 167 dYv~~in~lk~kk~~eiL~~l~~~~~AQ~tfF~qG~k~le~l~p~~~~ 214 (215)
T cd07642 167 EYLLKVNEIKIKKGVDLLQNLIKYFHAQCNFFQDGLKAVETLKPSIEK 214 (215)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 544466668888999999999999999999999999999999999875
No 129
>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is
Probab=98.52 E-value=0.0005 Score=59.25 Aligned_cols=197 Identities=13% Similarity=0.124 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 190 YEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLL 269 (403)
Q Consensus 190 f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (403)
++.--+.++........|.+.++++..+...++.....||..|..+|.-+++.-+..+..+|++...++.. .
T Consensus 4 L~akle~l~~~~~~y~~Ll~~~~~~~~~~~~l~q~q~~lG~~f~~l~~~~~~~a~~~f~~~~~a~r~~~k~----g---- 75 (203)
T cd00011 4 LELQLELLRETKRKYESVLQLGRALTAHLYSLSQTQHALGDAFADLSQKDPELAGEEFGYNAEAQKLLCKN----G---- 75 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh----H----
Confidence 34444455666667778888889999999999999999999999999888653267788877776655432 1
Q ss_pred HhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 270 MNFEEPLKDYVRAVQSIKA-TIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFET 348 (403)
Q Consensus 270 ~~~~e~l~~~~~~~~s~k~-~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~ 348 (403)
..+..+|..++..+.-+.+ ++.+-..-+..|+.+.-+.......+..+.....+-++.--.++..+....+.++.+|+.
T Consensus 76 ~~ll~~l~~~~~~l~T~~~kai~DT~lTI~~ye~aR~EY~a~~l~~ke~~~e~~~~~~~~~~k~r~~q~~~~~~k~kf~k 155 (203)
T cd00011 76 ETLLGAVNFFVSSINTLVTKAIEDTLLTVKQYEAARLEYDAYRLDLKELSLEPRDDTAGTRGRLRSAQATFQEHRDKFEK 155 (203)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHhHHHHHHHHHHhcccCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 1233344444443322221 121222223333333333333333333332111111222234566677888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 349 IVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLL 394 (403)
Q Consensus 349 i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~ 394 (403)
....+..=++-....|..+|...|..|......|+..+....+.+.
T Consensus 156 Lr~Dv~~Kl~lL~~~r~~~l~~qL~~~~~al~~y~~~~~~~l~~~~ 201 (203)
T cd00011 156 LRGDVAIKLKFLEENKIKVMHKQLLLFHNTVSAYFAGNQKVLEQTL 201 (203)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 9999999999999999999999999999999999999988887764
No 130
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.50 E-value=3.3e-05 Score=68.95 Aligned_cols=157 Identities=15% Similarity=0.135 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHH--
Q 043025 219 RELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVR-AVQSIKATIAERAN-- 295 (403)
Q Consensus 219 ~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~-~~~s~k~~l~~R~~-- 295 (403)
..|+..+.+-|..|........++|+.++..+|.+..+++.....+-......|+++|..++. .+ +++-+.|.+
T Consensus 81 ~aLs~~m~~~~~~l~~~~~~~~s~lg~aL~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~d~---k~i~k~RKkle 157 (242)
T cd07600 81 HALSRAALASSLELKSLEPEDEDPLSKALGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNTSF---QKAHKARKKVE 157 (242)
T ss_pred HHHHHHHHHHHHHhCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 344555555555554443333467889999999999999988777777777889888888776 33 333333332
Q ss_pred -HHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 296 -AFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHN 374 (403)
Q Consensus 296 -~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~ 374 (403)
.-.+|..+..++.+. ...+|-+.+..+++.++ .+|..-++....-+..+.. ..+.-+.|..
T Consensus 158 ~~RLd~D~~K~~~~ka---------~~~~k~~~~~~e~E~aE-------def~~a~E~a~~~M~~il~--~~e~i~~L~~ 219 (242)
T cd07600 158 DKRLQLDTARAELKSA---------EPAEKQEAARVEVETAE-------DEFVSATEEAVELMKEVLD--NPEPLQLLKE 219 (242)
T ss_pred HHHHHHHHHHHHHHhc---------cccccccchHHHHHHHH-------HHHHHhHHHHHHHHHHHHh--hhHHHHHHHH
Confidence 233555554433221 12233344444444444 4444444444444444432 2678899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043025 375 FSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 375 ~a~~qi~~~~~~~~~We~~~~~ 396 (403)
|+..|+.||+++.+..+.+++.
T Consensus 220 fv~AQl~Yh~~~~e~L~~l~~~ 241 (242)
T cd07600 220 LVKAQLAYHKTAAELLEELLSV 241 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999998865
No 131
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=98.50 E-value=0.00059 Score=59.07 Aligned_cols=178 Identities=13% Similarity=0.165 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 043025 204 LAEAQKHAYRLVKRHRELGESLSDFGKAAKLLG-----ACEGD---ALGKAFSELGMKSEALSVKLQREAHQLLMNFEEP 275 (403)
Q Consensus 204 l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~-----~~e~~---~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 275 (403)
++.|.+....++...++++.+...|+..+..++ +.+.+ .+..++..+++++..+.+......+.....+..+
T Consensus 18 ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~gd~~~dDe~~I~~~L~kF~~~L~ei~~~r~~L~~qa~~~l~~~ 97 (207)
T cd07636 18 IKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQCIGDAETDDEICIARSLQEFAAVLRNLEDERTRMIENASEVLITP 97 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444 22211 3667888899888888877776666666777778
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc-ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 276 LKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLM-LTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLM 353 (403)
Q Consensus 276 l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~-~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~ 353 (403)
|..++. .+..+|+.=+.=++.-..|+.+..+ ...+. ..++ .++++++..+...+..|..++-..
T Consensus 98 L~~F~kedi~~~Ke~kK~FdK~se~~~~al~k-------~~~ls~k~K~-------~~~eEA~~~L~~~r~~F~~~sLdY 163 (207)
T cd07636 98 LEKFRKEQIGAAKEAKKKYDKETEKYCAVLEK-------HLNLSSKKKE-------SQLHEADSQVDLVRQHFYEVSLEY 163 (207)
T ss_pred HHHHHHHHHHHHHHHhhhHhhhhhHHHHHHHH-------HhcCcccCCc-------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877765 3556666433222233334333221 11221 1223 356666777777888898888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 354 NEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLP 395 (403)
Q Consensus 354 ~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~ 395 (403)
.-.|...+..|..+|...|..|...+..|+++-.++.+++.|
T Consensus 164 V~qi~~vq~rKkfefle~llsfm~a~~tffhqG~el~~d~~~ 205 (207)
T cd07636 164 VFKVQEVQERKMFEFVEPLLAFLQGLFTFYHHGYELAKDFSD 205 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Confidence 889999999999999999999999999999999999988765
No 132
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=98.50 E-value=0.0004 Score=60.09 Aligned_cols=179 Identities=14% Similarity=0.168 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 043025 204 LAEAQKHAYRLVKRHRELGESLSDFGKAAKLLG-----ACEG---DALGKAFSELGMKSEALSVKLQREAHQLLMNFEEP 275 (403)
Q Consensus 204 l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~-----~~e~---~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 275 (403)
++.|.+....++...+.++.+...|+..+..++ +... ..++..++.+++....+.+............+..|
T Consensus 18 i~kLiK~c~~~i~a~k~~~~a~~~Fa~~L~~f~~~~~gd~~~dde~~i~~sl~ef~~~~~el~d~r~~L~~~~~~~l~~p 97 (207)
T cd07635 18 IKELLKDGKNLIAATKSLSAAQRKFAHSLRDFKFEFIGDAETDDERCIDASLQEFSNFLKNLEEQREIMALNVTETLIKP 97 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444 2211 13456777888877777776666666666777778
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 276 LKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMN 354 (403)
Q Consensus 276 l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~ 354 (403)
|..+.. .+..+|+.=+.=++.-.+++.+..+ .-.+...+ | +.++++++..+...+..|...+-...
T Consensus 98 L~~F~kedl~~~Ke~KK~FdK~se~~~~Al~K-------~~~ls~kk--k----~~e~~EA~~~l~~~r~~F~~~sLdYv 164 (207)
T cd07635 98 LERFRKEQLGAVKEEKKKFDKETEKNYSLLEK-------HLNLSAKK--K----EPQLQEADVQVEQNRQHFYELSLEYV 164 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-------HHhccCCC--C----ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877765 3555555322222222333333222 11121111 1 12455777788888899999999989
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 355 EEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLP 395 (403)
Q Consensus 355 ~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~ 395 (403)
..|...+..|..+|...|..|+..++.|+++-.++.+++.|
T Consensus 165 ~qin~lQ~rKKfe~le~ll~~m~a~~tffhqG~el~~d~~~ 205 (207)
T cd07635 165 CKLQEIQERKKFECVEPMLSFFQGVFTFYHQGYELAKDFNH 205 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Confidence 99999999999999999999999999999999999988865
No 133
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=98.48 E-value=0.0005 Score=61.12 Aligned_cols=195 Identities=16% Similarity=0.209 Sum_probs=128.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEG-DALGKAFSELGMKSEALSVKLQREA 265 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~-~~L~~~~~~~~~~~~~~~~~~~~~~ 265 (403)
|..+..--+-+++....+.+|.+.++.+..+...++.....||..|..++.-|. +.++..+..+|++...++..-..
T Consensus 32 D~eL~~kle~l~~~~~~y~~L~~~~~~~~~~l~~l~q~q~~lg~~f~~~~~~e~~~~l~~~f~~~~~~~~~~~~~~~~-- 109 (229)
T PF06456_consen 32 DDELDAKLELLRDTQRTYRGLLKHARAYQNRLQALSQTQKELGDFFAELGVREKSPALGEEFSANGEAQRSLAKQGET-- 109 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-CCGHHHHHHHHHHHHHHHHHHHH--
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 677777777778888888999999999999999999999999999999999664 45788898888887766543222
Q ss_pred HHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHH
Q 043025 266 HQLLMNFEEPLKDYVRAVQSIK-ATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTR 344 (403)
Q Consensus 266 ~~~~~~~~e~l~~~~~~~~s~k-~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~ 344 (403)
+..+|..+...+.-+. .++.+=..-+..|+.+.-+.......++.+..........-...+...+...+.++.
T Consensus 110 ------L~~~l~~~~~~l~Tf~~kaI~DT~~Tik~ye~aR~EY~ay~~~lke~~~e~~~~~~~~~~~~r~~q~~~~~~k~ 183 (229)
T PF06456_consen 110 ------LLKALKRFLSDLNTFRNKAIPDTLLTIKKYEDARFEYDAYRLWLKEMSDELDPDTAKQEPKFRVAQGNYQEAKE 183 (229)
T ss_dssp ------HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TSTSSTTCHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhcccchHHHHHHHHHHHHH
Confidence 2333333333221111 112121222233333333333333333333210000111113444555666788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 345 RFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADA 389 (403)
Q Consensus 345 ~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~ 389 (403)
+|+.....+..=+.-.+..|..+|...|.-|......|+..+...
T Consensus 184 rf~kLr~Dv~~Kl~LL~~~rv~~~~~qL~~~~~al~~y~~~~~~~ 228 (229)
T PF06456_consen 184 RFDKLRSDVLVKLDLLDENRVNVMSHQLVLFQNALAAYFSGNAQA 228 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 999999999999999999999999999999999999999888764
No 134
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=98.47 E-value=0.0002 Score=63.10 Aligned_cols=138 Identities=14% Similarity=0.156 Sum_probs=88.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHH
Q 043025 240 GDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANA---FRQQCELAETMKLKEINLDK 316 (403)
Q Consensus 240 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~---~~~~~~~~~~l~~k~~~l~k 316 (403)
.+.++.++..+|.+..+++............+|+.||..++.- .++++-+.|.+. -.+|..+..++.+
T Consensus 88 ~S~~G~aL~~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~--dik~i~k~RKkLe~rRLdyD~~K~r~~k------- 158 (229)
T cd07616 88 GTAYGNALIKCGETQKQIGTADRELIQTSAINFLTPLRNFIEG--DYKTITKERKLLQNKRLDLDAAKTRLKK------- 158 (229)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 3578899999999999999887766666666899999888753 344444444432 2355555443322
Q ss_pred hcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 317 LMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 317 l~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~ 396 (403)
+.++++-...+.+ ++.++.+|+.-++.+..=+..+. ....+....|.+|++.|+.||+++.+..+++...
T Consensus 159 --Ak~~~~~~~~e~e-------lr~ae~efees~E~a~~~m~~i~-~~~~e~~~~L~~lv~AQl~Yh~~~~e~L~~L~~~ 228 (229)
T cd07616 159 --AKVAEARAAAEQE-------LRITQSEFDRQAEITRLLLEGIS-STHAHHLRCLNDFVEAQMTYYAQCYQYMLDLQKQ 228 (229)
T ss_pred --CCcchhhcchHHH-------HHHHHHHHHHHHHHHHHHHHhhh-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1122332223344 44444445544444433222222 3357788999999999999999999999998764
No 135
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=98.45 E-value=0.00027 Score=61.95 Aligned_cols=149 Identities=14% Similarity=0.195 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH--
Q 043025 219 RELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANA-- 296 (403)
Q Consensus 219 ~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~-- 296 (403)
.-||..|.+.|..|. +.+.++.++..+|.+..+++.....+.......|++||..+.. ..++++.+.|.++
T Consensus 67 ~~Lg~~M~~~G~elg-----~dS~~G~aL~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~--~dik~i~k~RKkLe~ 139 (223)
T cd07613 67 ALLAEAMLKFGRELG-----DECNFGPALGDVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHD--KDLREIQHHLKKLEG 139 (223)
T ss_pred hHHHHHHHHHHhhCC-----CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 334455554443332 2357899999999999999999888888888999999988742 2334444444332
Q ss_pred -HHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 297 -FRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNF 375 (403)
Q Consensus 297 -~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~ 375 (403)
-.+|..+ +.++ ++. .+.+++.++.+|+.-.+.+...+..|-.. ..+.-..|.+|
T Consensus 140 rRLd~D~~-------K~r~--------~k~---------~eeElr~A~~kFees~E~a~~~M~n~l~~-e~e~~~~L~~f 194 (223)
T cd07613 140 RRLDFDYK-------KKRQ--------GKI---------PDEELRQALEKFDESKEIAESSMFNLLEM-DIEQVSQLSAL 194 (223)
T ss_pred HHHhHHHH-------HHhC--------CCC---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHH
Confidence 1233322 1111 121 15566666777777777777666666643 34566699999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 376 SKGQARLASSIADAWRTLLPKLEA 399 (403)
Q Consensus 376 a~~qi~~~~~~~~~We~~~~~~~~ 399 (403)
++.|+.||+++.++.+++.+.++.
T Consensus 195 veAQl~Yh~qa~eiL~~l~~~l~~ 218 (223)
T cd07613 195 VQAQLEYHKQATQILQQVTVKLED 218 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999874
No 136
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=98.39 E-value=0.00047 Score=60.21 Aligned_cols=129 Identities=17% Similarity=0.202 Sum_probs=81.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHH
Q 043025 240 GDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERAN---AFRQQCELAETMKLKEINLDK 316 (403)
Q Consensus 240 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~---~~~~~~~~~~~l~~k~~~l~k 316 (403)
.+.++.++..+|.+..+++.+...+......+|++||..+..- .++++-+.|.+ .-.+|..+..++.+
T Consensus 88 ~s~~G~aL~~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~--dlk~i~k~RKkLe~rRLd~D~~K~r~~k------- 158 (220)
T cd07617 88 GTPYGKTLIKVGETQKRLGAAERDFIHTSSINFLTPLRNFLEG--DWKTISKERRLLQNRRLDLDACKARLKK------- 158 (220)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 3578899999999999999987777777788899999887661 12222222322 12344443322211
Q ss_pred hcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 317 LMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 317 l~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~ 396 (403)
+ +.+++.++.+|+.-++....=+..+.. ...+-...|.+|++.|+.||+++.+..+++.+.
T Consensus 159 -----------a-------e~elr~A~~kf~~~~E~a~~~M~~il~-~~~e~l~~L~~lv~AQl~Yh~q~~e~L~~l~~~ 219 (220)
T cd07617 159 -----------A-------EHELRVAQTEFDRQAEVTRLLLEGISS-THVNHLRCLHEFVEAQATYYAQCYRHMLDLQKQ 219 (220)
T ss_pred -----------c-------HHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 234444555555544433332333321 124566789999999999999999999998765
No 137
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.37 E-value=0.00069 Score=60.05 Aligned_cols=148 Identities=11% Similarity=0.064 Sum_probs=96.5
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHH
Q 043025 241 DALGKAFSELGMKS-EALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERAN---AFRQQCELAETMKLKEINLDK 316 (403)
Q Consensus 241 ~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~---~~~~~~~~~~~l~~k~~~l~k 316 (403)
..++.++ .++.++ ..++......-......|++||..... .-++++.+.|.+ ...+|..+...+......-..
T Consensus 77 S~lg~aL-e~~~~~e~~LA~~l~~~E~~Ve~~vl~PL~~L~e--~dL~~I~k~rKkL~k~~LD~D~~K~R~~~a~k~s~~ 153 (257)
T cd07620 77 SSIRRVL-EMCCFMQNMLANILADFEMKVEKDVLQPLNKLSE--EDLPEILKNKKQFAKLTTDWNSAKSRSPQAAGRSPR 153 (257)
T ss_pred chHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--hhHHHHHHHHHHHHhHHhhHHHHHHHHHHhhccccC
Confidence 3677777 555555 777777666666777889999988766 344555555544 234666655443221100000
Q ss_pred hccc------------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 317 LMLT------------RSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLAS 384 (403)
Q Consensus 317 l~~~------------~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~ 384 (403)
-++ ...|++.++++++++..+ |+.-......++-.|- .++.++-..|..|++.|.+||+
T Consensus 154 -~~~~~~~~~~~~~~~~~~K~~~lkeE~eea~~K-------~E~~kd~~~a~Mynfl-~kE~e~a~~l~~lveaQ~~YHr 224 (257)
T cd07620 154 -SGGRSEEVGEHQGIRRANKGEPLKEEEEECWRK-------LEQCKDQYSADLYHFA-TKEDSYANYFIRLLELQAEYHK 224 (257)
T ss_pred -CccccccccccccccccccccccHHHHHHHHHH-------HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHH
Confidence 011 124655665555555555 4444444566677776 4689999999999999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 043025 385 SIADAWRTLLPKLEAC 400 (403)
Q Consensus 385 ~~~~~We~~~~~~~~~ 400 (403)
+.++..+.++|.++.-
T Consensus 225 qsl~~Le~~l~~~~~~ 240 (257)
T cd07620 225 NSLEFLDKNITELKEN 240 (257)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998753
No 138
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=98.31 E-value=0.0017 Score=55.81 Aligned_cols=200 Identities=14% Similarity=0.154 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043025 192 KLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLLMN 271 (403)
Q Consensus 192 ~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (403)
-.+..++++-...+.+.......+.....+...+.+||..+- +.. ...+++++..++..+..+........+.....
T Consensus 13 ~~e~~L~Kl~K~~kam~~SG~~yv~n~~~f~~~l~~Lg~~~~--~~d-d~~i~~a~~kfs~~~~El~~~~k~L~~~~~~~ 89 (215)
T cd07641 13 QDRTALQKVKKSVKAIYNSGQDHVQNEENYAQALDKFGSNFL--SRD-NPDLGTAFVKFSTLTKELSTLLKNLLQGLSHN 89 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555555555566666554431 112 24678889999999999988888777777777
Q ss_pred hhHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 272 FEEPLKDYVR-AVQSIK-ATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETI 349 (403)
Q Consensus 272 ~~e~l~~~~~-~~~s~k-~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i 349 (403)
+.-+|..++. .+.-+| |+=+.=++++.+|+.+..+.++.+.+. .++.-++..+..=.++.+.++..+..|...
T Consensus 90 v~~~L~~flK~Dlr~~K~d~KK~FdK~~kDye~k~~K~ek~~r~~-----~K~~e~~r~e~~~~Eaa~~l~~~Rr~Fq~~ 164 (215)
T cd07641 90 VIFTLDSLLKGDLKGVKGDLKKPFDKAWKDYETKFTKIEKEKREH-----AKQHGMIRTEITGAEIAEEMEKERRLFQLQ 164 (215)
T ss_pred HHHHHHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHhhhhhh-----cCcccchhccccchhHHHHHHHHHHHHHHH
Confidence 7777777654 466666 544444455666666655444322111 122111111111113444555566666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 350 VRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEA 399 (403)
Q Consensus 350 ~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~ 399 (403)
.-.-.--+.-.+..+..++.+.|.+|...|..|+++-....+++.|.++.
T Consensus 165 a~dYllqin~iq~Kk~~eiLq~ll~~~hAq~tfFqqG~~~~~~l~py~k~ 214 (215)
T cd07641 165 MCEYLIKVNEIKTKKGVDLLQNLIKYYHAQCNFFQDGLKTADKLKQYIEK 214 (215)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55544555667778899999999999999999999999999999998864
No 139
>KOG4773 consensus NADPH oxidase [Energy production and conversion]
Probab=98.21 E-value=1.7e-06 Score=78.46 Aligned_cols=102 Identities=27% Similarity=0.386 Sum_probs=85.2
Q ss_pred EEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCC---------ccCCCCCCCccccc
Q 043025 28 VSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG---------IFIPPLPEKSAVEK 98 (403)
Q Consensus 28 v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~---------~~iP~lP~k~~~~~ 98 (403)
..|-+.+++...+ +|.+|.|.++. +++....|+|||-+|..++..|.+++++ |++|+||.+..++
T Consensus 24 ~kvi~~eke~~f~-~hFvyVievkw----~~~se~vVyrry~E~~~~tkklee~f~~ss~k~t~l~~n~p~LpA~v~fd- 97 (386)
T KOG4773|consen 24 AKVIDAEKERSFT-SHFVYVIEVKW----YGGSEGVVYRRYFEFHALTKKLEERFGPSSGKSTALACNLPTLPAIVYFD- 97 (386)
T ss_pred HHHHhHHHhcccc-hheEEEEEehh----hccccceeeeehhhhhhhcchHhhcCCCcccccCchhccCCCCcceeEec-
Confidence 3455666655554 48999998875 3667899999999999999999999975 7899999999997
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcCccccC-Chhhhcccc
Q 043025 99 FRFSAEFIEMRRQGLDLFVNRIASHPELQQ-SEDLKTFLQ 137 (403)
Q Consensus 99 ~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~-~~~~~~FL~ 137 (403)
+..+..++|...|..|+..+++-|+.+- ++.++.|.-
T Consensus 98 --fkqe~Ae~r~~~ln~y~e~LlslPi~~l~~p~l~~fff 135 (386)
T KOG4773|consen 98 --FKQEIAEERIPALNAYCEWLLSLPIGRLGGPGLRPFFF 135 (386)
T ss_pred --hhhhhhhhhhHHHHHHHHHHHhcchhhcCCCCceeeee
Confidence 8899999999999999999999997754 777777654
No 140
>KOG2101 consensus Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s) [Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]
Probab=98.18 E-value=5.6e-06 Score=79.63 Aligned_cols=94 Identities=23% Similarity=0.375 Sum_probs=71.6
Q ss_pred CCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhc-CCccCCCCCCCc-------cccccCCCHHHHHH
Q 043025 37 GNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY-KGIFIPPLPEKS-------AVEKFRFSAEFIEM 108 (403)
Q Consensus 37 ~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~-p~~~iP~lP~k~-------~~~~~~~~~~~i~~ 108 (403)
++....|++|.|.+...-...+...|.|+|||+||..||..|.+.| |...+| .|... ..+ +++..++..
T Consensus 129 ~~~~~~~~vy~~~v~~~~~~~~~~~~~V~rRysdf~~l~~~Lk~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~ 205 (362)
T KOG2101|consen 129 REKSKSFTVYKVTVSVSSRREDLSTAVVSRRYSDFSRLHRRLKRQFNPALRFP-GPKFRNEIQKKKLLG--NFDADVIPE 205 (362)
T ss_pred cccccceeEEEEEEEecCCCccCcCceeeechhHHHHHHHHHHHhcCccccCC-CccchhHHHHHHhhc--cchhhhhhh
Confidence 3445689999999986432223346999999999999999999999 776653 33333 334 889999999
Q ss_pred HHHHHHHHH--HHHhcCccccCChhhh
Q 043025 109 RRQGLDLFV--NRIASHPELQQSEDLK 133 (403)
Q Consensus 109 R~~~L~~fl--~~~~~~~~l~~~~~~~ 133 (403)
|+..++.|| +....+|.+.++..+.
T Consensus 206 r~~~~~~fl~~~f~~~~~~~~~~~~~~ 232 (362)
T KOG2101|consen 206 RSEALEEFLSLQFKDSKPSNVNCKKVM 232 (362)
T ss_pred hhhhHHHHHHhhhhhccccccchHHhh
Confidence 999999999 7777777777665444
No 141
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=98.10 E-value=0.0052 Score=53.12 Aligned_cols=189 Identities=13% Similarity=0.093 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 192 KLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGAC------EGDALGKAFSELGMKSEALSVKLQREA 265 (403)
Q Consensus 192 ~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~------e~~~L~~~~~~~~~~~~~~~~~~~~~~ 265 (403)
.+.+|...+-..+ .++....++|+.+-..|+..+...-.- ..+.+.+++..+++++..+........
T Consensus 13 ~~~~~~~~~~~~~-------~~~~~a~~~ls~a~~~~~~~l~~~~~~~f~~~~dDe~i~~~L~kFs~~L~El~~~~~~L~ 85 (215)
T cd07631 13 AISNYFNQLFQAM-------HRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLS 85 (215)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555444444 444445555555555555555544310 123477889999999999988888888
Q ss_pred HHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccc-CcchHHHHHHHHHHHHHHHHHHH
Q 043025 266 HQLLMNFEEPLKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLT-RSDKVGEAEIEYKELKAESEDST 343 (403)
Q Consensus 266 ~~~~~~~~e~l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~-~~~ki~~l~~~i~~~~~~~~~~~ 343 (403)
+.....+..||..++. .+..+|+.=+.=++.-.+++.+.. +-..+... +++++ .+++...+...+
T Consensus 86 ~q~~~sl~~pL~~F~kedL~~~Ke~KK~FdK~Se~~d~Al~-------K~a~lsk~K~~E~~------~eea~~~v~~tR 152 (215)
T cd07631 86 TQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAIN-------RYSRLSKRRENEKV------KYEVTEDVYTSR 152 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-------HHhcCCCCCCchHH------HHHHHHHHHHHH
Confidence 8777788888888765 455666632222222223333322 21222211 12222 122344455577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhc
Q 043025 344 RRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIAD-AWRTLLPKLEAC 400 (403)
Q Consensus 344 ~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~-~We~~~~~~~~~ 400 (403)
..|..+.-.....|...+..|..+|...|..|++.++.|+++-.+ .-.++-|-+..+
T Consensus 153 ~~F~~~aLdYv~qLn~lQ~rKKfefLe~lLs~m~A~~tFFhqG~e~L~~dl~~f~~~l 210 (215)
T cd07631 153 KKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLTNI 210 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 888888888888999999999999999999999999999998888 333444444433
No 142
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.01 E-value=0.0073 Score=51.81 Aligned_cols=184 Identities=11% Similarity=0.115 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 198 FELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGA-----CE---GDALGKAFSELGMKSEALSVKLQREAHQLL 269 (403)
Q Consensus 198 ~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~-----~e---~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (403)
.+++..++.|.+....++...+.++.+...|+..+..+.- .. .-.+++++..+++.+..+-+......+.-.
T Consensus 12 e~~~~~IkkliK~~~~li~a~K~~s~A~r~Fa~~L~df~f~~igd~~tdde~~I~~sL~~F~~~L~~ie~~r~~l~d~aq 91 (207)
T cd07633 12 ERTNKFIKDVIKDGNALISAIKEYSSAVQKFSQTLQSFQFDFIGDTLTDDEINIAESFKEFAELLQEVEEERMMMVQNAS 91 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444555555555544444432 11 123677888888888888777666666666
Q ss_pred HhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh-cccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 270 MNFEEPLKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKL-MLTRSDKVGEAEIEYKELKAESEDSTRRFE 347 (403)
Q Consensus 270 ~~~~e~l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl-~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~ 347 (403)
..+..+|..++. .+..+|+.=+.=++.-..++.+..+ -..+ ...++ .+++++...+...+..|.
T Consensus 92 ~s~~~~L~~F~Kedi~~~Ke~KK~FdK~se~~~~aL~k-------~a~~s~k~K~-------~e~eEA~~~L~~~r~~F~ 157 (207)
T cd07633 92 DLLIKPLENFRKEQIGFTKERKKKFEKDSEKFYSLLDR-------HVNLSSKKKE-------SQLQEADLQVDKERQNFY 157 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH-------HhcccccCCc-------hHHHHHHHHHHHHHHHHH
Confidence 677777777654 3445555322111111222222211 1111 01122 355666777777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 348 TIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLP 395 (403)
Q Consensus 348 ~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~ 395 (403)
.++-.-.-.|.-.+..+.-++-..|.+|...+..||.+-.++..++.|
T Consensus 158 ~~aLdYV~qI~~vQerKKfeive~mLsf~~a~~tf~hqG~el~~df~~ 205 (207)
T cd07633 158 ESSLEYVYQIQEVQESKKFDVVEPVLAFLHSLFTSNNLTVELTQDFLP 205 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcc
Confidence 888887778888999999999999999999999999999998888765
No 143
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=97.99 E-value=0.01 Score=52.70 Aligned_cols=195 Identities=13% Similarity=0.154 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 196 YIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE-----GDALGKAFSELGMKSEALSVKLQREAHQLLM 270 (403)
Q Consensus 196 ~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e-----~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (403)
-++++...+.+|.+.+.++.+..+.++.+...|..++..++..- ...++.++..++.....+.............
T Consensus 4 i~~~~~P~~e~lv~~~~kY~~al~~~~~a~~~f~dal~ki~~~A~~s~~s~~lG~~L~~~s~~~r~i~~~~~~~~~~~~~ 83 (219)
T PF08397_consen 4 IMEDFNPAWENLVSLGKKYQKALRAMSQAAAAFFDALQKIGDMASNSRGSKELGDALMQISEVHRRIENELEEVFKAFHS 83 (219)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567777777788888888888888888888888887532 3467888888888888887777777777777
Q ss_pred hhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccc----CcchHHHHHHHHHHHHHHHHHHHHH
Q 043025 271 NFEEPLKDYVRA-VQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLT----RSDKVGEAEIEYKELKAESEDSTRR 345 (403)
Q Consensus 271 ~~~e~l~~~~~~-~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~----~~~ki~~l~~~i~~~~~~~~~~~~~ 345 (403)
.|..||..-+.. ...+.+ + ......++....+.+.+....+.+++.. +.+....+...++.++.....+..-
T Consensus 84 ~li~pLe~~~e~d~k~i~~-~--~K~y~ke~k~~~~~l~K~~se~~Kl~KK~~kgk~~~~~~~~~~~~~v~~~~~ele~~ 160 (219)
T PF08397_consen 84 ELIQPLEKKLEEDKKYITQ-L--EKDYEKEYKRKRDELKKAESELKKLRKKSRKGKDDQKYELKEALQDVTERQSELEEF 160 (219)
T ss_dssp HTHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhH-H--HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHHHH
Confidence 777777665543 222222 2 2223457777777888777777776522 2222233344455554444444433
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043025 346 FETIVRL-MNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLE 398 (403)
Q Consensus 346 ~~~i~~~-~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~ 398 (403)
....... +..|-.|| --|-+.+..++...+.+|.+.....+..++...
T Consensus 161 ~~~~~r~al~EERrRy-----c~lv~~~~~~~~~~~~~~~~~~~~L~~~~~~w~ 209 (219)
T PF08397_consen 161 EKQSLREALLEERRRY-----CFLVEKHCSVVKSELAFHNEAVEHLQEKLDDWQ 209 (219)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3333333 34444444 445666667777777777765555555555443
No 144
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=97.91 E-value=0.016 Score=52.23 Aligned_cols=157 Identities=18% Similarity=0.169 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 043025 202 NHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVR 281 (403)
Q Consensus 202 ~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ 281 (403)
..|..|-+.-..++.....++.+....+..+..|+..+.+.|+++..++|..+..++..... |...+..|..
T Consensus 57 r~L~~LIk~EK~vi~s~e~~are~~~~A~~L~~WG~~edddl~DIsDklgvLl~e~ge~e~~--------~a~~~d~yR~ 128 (271)
T PF13805_consen 57 RKLQRLIKAEKSVIRSLESAARERKAAAKQLSEWGEQEDDDLSDISDKLGVLLYEIGELEDQ--------YADRLDQYRI 128 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 34455555666667777788888888899999999888777888777777777666655333 4444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc--ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 282 AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLM--LTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVR 359 (403)
Q Consensus 282 ~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~--~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~ 359 (403)
.+.+|++ ++..++....-.+++. .++.+|+ .....|+..|++++..++.+...++..+..++....+|--.
T Consensus 129 ~LK~IR~----~E~sl~p~R~~r~~l~---d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~ 201 (271)
T PF13805_consen 129 HLKSIRN----REESLQPSRDRRRKLQ---DEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQKLKEAYS 201 (271)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHH---HHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHhHHHHHhHHHH---HHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHH
Confidence 5544333 3333333222222222 2223333 33456999999999999988877777777776664444322
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043025 360 FQEQKTLDMGIAFHNFSKGQA 380 (403)
Q Consensus 360 f~~~r~~~l~~~l~~~a~~qi 380 (403)
.+ -.+|.++++.++
T Consensus 202 ~~-------f~Al~E~aEK~~ 215 (271)
T PF13805_consen 202 LK-------FDALIERAEKQA 215 (271)
T ss_dssp HH-------HHHHHHHHHHHH
T ss_pred HH-------HHHHHHHHHHHH
Confidence 21 234555555554
No 145
>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran
Probab=97.89 E-value=0.012 Score=50.04 Aligned_cols=192 Identities=13% Similarity=0.159 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 043025 198 FELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLK 277 (403)
Q Consensus 198 ~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~ 277 (403)
.++...++.+......-+.....++..+..||... ++.. +..++.+|-.++-....++..+..........+.=|++
T Consensus 19 ~k~kk~vkai~~sg~~hv~ne~~~~~~le~lg~~~--l~~~-~~~~~t~fl~~av~tkel~al~k~L~qn~nniv~fpld 95 (213)
T cd07640 19 QRIKKIVKAIHNSGLNHVENEEQYTEALENLGNSH--LSQN-NHELSTGFLNLAVFTREVTALFKNLVQNLNNIVSFPLD 95 (213)
T ss_pred HHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHhhhh--hcCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchH
Confidence 33344444444555555555566666666666332 3332 35688888888888888887777777766666666777
Q ss_pred HHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 278 DYVR-AVQSIK-ATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNE 355 (403)
Q Consensus 278 ~~~~-~~~s~k-~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~ 355 (403)
.++. .+.-+| ++-+.=++++.+|+.+..+.+ +.+..++....-..-+..++.+.++..+..|....-.-.-
T Consensus 96 sflK~dlr~~K~D~KK~FeK~skDyE~kl~K~a-------k~~r~k~~~~g~~~~e~eEaae~l~~eRr~Fql~acdYll 168 (213)
T cd07640 96 SLLKGQLRDGRLESKKQMEKAWKDYEAKIGKLE-------KERREKQKQHGLIRLDMTDTAEDMQRERRNFQLHMCEYLL 168 (213)
T ss_pred HHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHh-------ccccccchhcccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7654 455555 544444445555555544332 2221111000001124455666677777777665555445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 356 EIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEA 399 (403)
Q Consensus 356 El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~ 399 (403)
-+.-.+..+..|+-+.|.+|...|..|+++-....+++.|.++.
T Consensus 169 kin~iq~KK~~diLq~Llsy~hAQ~~fFqqG~~~l~~l~pyik~ 212 (213)
T cd07640 169 KAQESQMKQGPDFLQSLIKFFHAQHNFFQDGWKAAQNLGPFIEK 212 (213)
T ss_pred HHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhc
Confidence 56666677889999999999999999999999999999998875
No 146
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.83 E-value=7e-05 Score=77.96 Aligned_cols=108 Identities=18% Similarity=0.267 Sum_probs=88.7
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCC-CH
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRF-SA 103 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~-~~ 103 (403)
...|+|...+++-.. +++..|.|++... .......+.|.|.+|..||..|+..||...+|.+|..-..+ +. -.
T Consensus 1375 i~~v~v~~f~K~~~p-nK~YmYvveV~r~---n~~e~s~i~RsF~EF~ElH~KL~~~Fp~~~Lp~fP~~~~~g--rsnik 1448 (1639)
T KOG0905|consen 1375 ISEVTVLKFEKHYSP-NKIYMYVVEVTRE---NQAEPSFIFRSFEEFQELHNKLRARFPSMKLPSFPHRIHLG--RSNIK 1448 (1639)
T ss_pred eEEEEEEEeeeeccC-CceEEEEEEEEec---CCCCchHHHHhHHHHHHHHHHHHHhCccccCCCCCceeeec--ccchh
Confidence 456888888887643 5788999999752 12234679999999999999999999999999999988887 44 46
Q ss_pred HHHHHHHHHHHHHHHHHhcC-ccccCChhhhccccc
Q 043025 104 EFIEMRRQGLDLFVNRIASH-PELQQSEDLKTFLQA 138 (403)
Q Consensus 104 ~~i~~R~~~L~~fl~~~~~~-~~l~~~~~~~~FL~~ 138 (403)
...++|...|+.||..|..- +.+..++.+..|+-+
T Consensus 1449 aVA~kR~~~ln~yl~~L~nas~EVa~cDlVyTFFhp 1484 (1639)
T KOG0905|consen 1449 AVAEKRIIELNKYLISLFNASDEVAHCDLVYTFFHP 1484 (1639)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhhccceeeeeech
Confidence 77889999999999999965 588889999998865
No 147
>cd07298 PX_RICS The phosphoinositide binding Phox Homology domain of PX-RICS. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. RICS is a Rho GTPase-activating protein for cdc42 and Rac1. It is implicated in the regulation of postsynaptic signaling and neurite outgrowth. An N-terminal splicing variant of RICS containing additional PX and Src Homology 3 (SH3) domains, also called PX-RICS, is the main isoform expressed during neural development. PX-RICS is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and
Probab=97.80 E-value=0.00027 Score=53.53 Aligned_cols=68 Identities=29% Similarity=0.425 Sum_probs=52.9
Q ss_pred ceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhh-----cCCccCCCCCCCccccccCCCHHHHHHHHHHHHHH
Q 043025 42 AYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEK-----YKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLF 116 (403)
Q Consensus 42 ~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~-----~p~~~iP~lP~k~~~~~~~~~~~~i~~R~~~L~~f 116 (403)
+=++|.|.+.+ .+..|.|.|+|.||..|.+.|..- |.+ +++||+..... ..++.+ ...|..|
T Consensus 26 ~e~~~~v~v~C-----qgrsw~VkRSyEdfr~LD~~LHrCvyDRrfS~--L~eLp~~~~l~---~~~~~v---~~~l~~Y 92 (115)
T cd07298 26 KELVYLVQIAC-----QGRSWIVKRSYEDFRVLDKHLHLCIYDRRFSQ--LPELPRSDSLK---DSPESV---TQMLMAY 92 (115)
T ss_pred CCeEEEEEEEe-----CCCceEEEeeHHHHHHHHHHHHHHHHhhhhhc--cccCCCccccc---ccHHHH---HHHHHHH
Confidence 56789998887 467999999999999999888754 544 88999977554 345555 4688888
Q ss_pred HHHHhc
Q 043025 117 VNRIAS 122 (403)
Q Consensus 117 l~~~~~ 122 (403)
|.++..
T Consensus 93 L~RlS~ 98 (115)
T cd07298 93 LSRLSA 98 (115)
T ss_pred HHHHHH
Confidence 888775
No 148
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=97.78 E-value=0.02 Score=49.25 Aligned_cols=182 Identities=12% Similarity=0.079 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 043025 205 AEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE------GDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKD 278 (403)
Q Consensus 205 ~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e------~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~ 278 (403)
+.|.+...++.....+++.+...++..+.....-+ .+.+.+.+..+++.++.+........+.....+..||..
T Consensus 19 ~~l~~~~~~~~~~~~~~~~a~~~~s~~l~~~~~~~~~~~~~D~~v~~sL~kFs~~L~el~~~h~~L~dqaq~sl~~pL~~ 98 (215)
T cd07632 19 NQLLQAMQRVYGAQNEMCLATQQLSKQLLAYEKQNFALGKGDEEVISTLQYFAKVVDELNVLHSELAKQLADTMVLPIIQ 98 (215)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666667777777777776665554322 235678899999999999888777777777778888877
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 043025 279 YVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELK--AESEDSTRRFETIVRLMNE 355 (403)
Q Consensus 279 ~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~--~~~~~~~~~~~~i~~~~~~ 355 (403)
++. .+..+|+.=+.=++.-.+++.+.. +...+...++ .++.+++ ..+...+..|..++-.-.-
T Consensus 99 F~KeDl~~vKe~KK~FdK~Se~~d~AL~-------KnaqlskkK~-------~E~~eae~~~~l~~sRr~F~~~ALdYV~ 164 (215)
T cd07632 99 FREKDLTEVSTLKDLFGIASNEHDLSMA-------KYSRLPKKRE-------NEKVKAEVAKEVAYSRRKQHLSSLQYYC 164 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HHhhCCcCCc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765 455555532211112222333222 1122221221 1222222 3466777788888878777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhc
Q 043025 356 EIVRFQEQKTLDMGIAFHNFSKGQARLASS----IADAWRTLLPKLEAC 400 (403)
Q Consensus 356 El~~f~~~r~~~l~~~l~~~a~~qi~~~~~----~~~~We~~~~~~~~~ 400 (403)
.|.-.+..|..+|-..|..|...++.|+++ +-..|++++..+..+
T Consensus 165 qiN~lQ~RKKfeiLE~mLsym~Aq~TFFhQGyeL~~~~~~~~~~~~~~~ 213 (215)
T cd07632 165 ALNALQYRKRVAMLEPMLGYTHGQINFFKKGAELFSKKLDSFLSSVSDM 213 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888888999999999999999999988865 455688888776554
No 149
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=97.73 E-value=0.023 Score=48.67 Aligned_cols=190 Identities=13% Similarity=0.184 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 195 HYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE-GDALGKAFSELGMKSEALSVKLQREAHQLLMNFE 273 (403)
Q Consensus 195 ~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (403)
+.++.....+.++...+.+++.+..++......||..|..+|.-| ++.++..|..+|++...+...-...... ..-|.
T Consensus 9 e~L~~t~~~Y~~l~~~~~~l~~~f~~l~qtqk~~Gd~Fa~l~~re~~p~l~eeF~~~ae~hR~l~k~G~~ll~a-i~~~~ 87 (215)
T cd07659 9 EELEQTAELYKGLVEHTKRLLRAFYALSQTHKEFGDLFANIGVREPQPAASEAFTKFGEAHRSIEKFGIELLKT-LKPML 87 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHhHHHHHHHHHhHHHHHHH-hHHHH
Confidence 334444555677778888888888999999999999999999876 3568888888887776664432222211 12222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcc---------cCcchHHHHHHHHHHHHHHHHHHHH
Q 043025 274 EPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLML---------TRSDKVGEAEIEYKELKAESEDSTR 344 (403)
Q Consensus 274 e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~---------~~~~ki~~l~~~i~~~~~~~~~~~~ 344 (403)
..|.-|+.- ++-| -..-+..|..+.-+...-..+++.+.. ...-+++...-+..-.-..-+.++.
T Consensus 88 s~l~T~l~K--aipD----T~lTikkY~~ar~EY~ayc~kvkEmd~ee~~~~~~~e~l~rvetgnyeyrl~lRcrq~~r~ 161 (215)
T cd07659 88 SDLGTYLNK--AIPD----TKLTIKKYADVKFEYLSYCLKVKEMDDEEYSYAALDEPLYRVETGNYEYRLILRCRQEARA 161 (215)
T ss_pred HHHHHHHHh--hCch----HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCcHHHHHhcchHHHHHHHHHHHHHH
Confidence 233333321 1111 112233444444444444444444431 1122444444444444445588899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 345 RFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWR 391 (403)
Q Consensus 345 ~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We 391 (403)
+|+.+-..+..=+.-.+..++.++..-|.-|......|+..+.+...
T Consensus 162 kf~kLR~DV~vKlelLe~k~vk~i~~QL~~f~~aisay~~~~~~~~~ 208 (215)
T cd07659 162 RFAKLRQDVLEKLELLDQKHVQDIVFQLQRFVSALSEYHSDCHELLK 208 (215)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999998887754
No 150
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=97.71 E-value=0.013 Score=53.66 Aligned_cols=139 Identities=17% Similarity=0.185 Sum_probs=96.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHH
Q 043025 240 GDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERAN---AFRQQCELAETMKLKEINLDK 316 (403)
Q Consensus 240 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~---~~~~~~~~~~~l~~k~~~l~k 316 (403)
.++|+.++..++.+..+++..--.+-......|+.+|...+.. .++.+-+-|.+ +-.++..+..++..
T Consensus 147 ~~~L~~aL~~~S~~~~~I~~aRL~qD~~I~~~Fn~~l~~~Ln~--~~~~a~k~RkkV~~sRL~~D~~R~~~k~------- 217 (289)
T PF10455_consen 147 EDPLSKALLKYSSAYEKIAQARLEQDQLIQKEFNKKLQTTLNT--DFKKANKARKKVENSRLQFDAARANLKN------- 217 (289)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcc-------
Confidence 3578999999999999998887777677777788777665542 12222222322 22344444333221
Q ss_pred hcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 317 LMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 317 l~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~ 396 (403)
..++.+-++ +..+++.++++|...++....++..+-. ..++-..|..|+..|+.||+.+++..+.++..
T Consensus 218 --~~~pekee~-------~r~~lE~aEDeFv~aTeeAv~~Mk~vl~--~~e~l~~Lk~lv~AQl~Yhk~aae~L~~~~~~ 286 (289)
T PF10455_consen 218 --KAKPEKEEQ-------LRVELEQAEDEFVSATEEAVEVMKEVLD--NSEPLRLLKELVKAQLEYHKKAAEALSELLKS 286 (289)
T ss_pred --cCCcccCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhc--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 123444443 4455667777888889998888888874 47788999999999999999999999999987
Q ss_pred hh
Q 043025 397 LE 398 (403)
Q Consensus 397 ~~ 398 (403)
++
T Consensus 287 l~ 288 (289)
T PF10455_consen 287 LD 288 (289)
T ss_pred cc
Confidence 75
No 151
>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Islet cell autoantigen 69-kDa (ICA69) is a diabetes-associated autoantigen that is highly expressed in brain and beta cells. It is involved in membrane trafficking at the Golgi complex in neurosecretory cells. It is coexpressed with Protein Interacting with C Kinase 1 (PICK1), also a the BAR domain containing protein, in many tissues at different developmental stages. In neurons, ICA69 colocalizes with PICK1 in cell bodies and dendrites but is absent in synapses where PICK1 is enriched. ICA69 contains an N-terminal BAR domain and a conserved C-terminal domain of unknown function. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. ICA69 associate
Probab=97.52 E-value=0.045 Score=46.54 Aligned_cols=188 Identities=14% Similarity=0.127 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043025 193 LKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNF 272 (403)
Q Consensus 193 ~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (403)
.-+.++........+.+.++.+..+...++..-..||..|..++.-+.+.-+......|+.....+.. ....
T Consensus 7 kielfrsvq~t~~~Llk~i~~yq~~l~~lsq~e~~LG~fl~e~~~~d~t~ag~~m~~t~KaL~~sg~q--------rl~~ 78 (204)
T cd07661 7 KLELFRSVQDTCLELLKIIDNYQERLCILSQEENVLGKFLKEQGKIDKTTAGKMMAATGKALSFSSQQ--------RLAL 78 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhhccHHHHHHHHHHHhHHH--------HHHH
Confidence 33455556666677778888888888899999999999999998776432233344444443333221 1122
Q ss_pred hHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHH
Q 043025 273 EEPLKDYVRAVQSIK--------ATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTR 344 (403)
Q Consensus 273 ~e~l~~~~~~~~s~k--------~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~ 344 (403)
..||..+...+.-+. ..++.-+.+-.+|..+...++.--. .| +|+--..+ ..+..+...++..+.
T Consensus 79 r~pl~~f~~~v~Tf~~rai~Dtl~Ti~~~E~aR~EY~a~~~~mk~~s~---el---dP~~~~~l-~kfr~aQ~qvr~~K~ 151 (204)
T cd07661 79 RVPLLRLYQEVETFRERAIADTLQTIQRMEKCRTEYRAALLWMKSVSQ---EL---DPDTYKQL-EKFRKAQAQVRSAKE 151 (204)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhh---hc---CCccchhH-HHHHHHHHHHHHHHH
Confidence 234444444333222 1122222223334433333321110 01 11111111 235566677777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 345 RFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLP 395 (403)
Q Consensus 345 ~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~ 395 (403)
+|+.....+..=++-....|...|...|..|-...+.|+++.....+.+..
T Consensus 152 kfdkLk~Dv~qKvdlL~asR~n~ls~~L~~yqnal~~y~~kt~~~~~~i~~ 202 (204)
T cd07661 152 RFDKLKMDVCQKVDLLGASRCNLLSHALVTYQNTLLQFWEKTSRTMATIHE 202 (204)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888999999999999999988877777777777766666544
No 152
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=97.48 E-value=0.066 Score=47.36 Aligned_cols=191 Identities=15% Similarity=0.153 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 043025 201 ENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEG-----DALGKAFSELGMKSEALSVKLQREAHQLLMNFEEP 275 (403)
Q Consensus 201 e~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~-----~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 275 (403)
...+.+|...+..+.+..+.++.+..-|..+|..+++.-. ..|+.++..+...+..+..............+..|
T Consensus 19 ~P~~~~li~~~~~Y~kal~a~~~a~~~~~dAl~kia~~A~~s~~sk~lG~~L~~i~~~~r~ie~~l~~~~~~~~~~li~p 98 (223)
T cd07605 19 NPVLRNLIKAGKKYQKALQALSQAAKVFFDALAKIGELASQSRGSQELGEALKQIVDTHKSIEASLEQVAKAFHGELILP 98 (223)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666777777777777766532 25666666666655555554444444444555555
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc----ccCcch-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 276 LKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLM----LTRSDK-VGEAEIEYKELKAESEDSTRRFETI 349 (403)
Q Consensus 276 l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~----~~~~~k-i~~l~~~i~~~~~~~~~~~~~~~~i 349 (403)
|..=+. ....+.+ + ......++....+.+++....+.|++ +..++| ...+...++.++... .+++.+
T Consensus 99 Le~k~e~d~k~i~~-~--~K~y~~E~K~~~~~l~K~~sel~Kl~KKs~~~~~~k~~~~l~~~~e~v~~k~----~ele~~ 171 (223)
T cd07605 99 LEKKLELDQKVINK-F--EKDYKKEYKQKREDLDKARSELKKLQKKSQKSGTGKYQEKLDQALEELNDKQ----KELEAF 171 (223)
T ss_pred hhhhHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccHHHHHHHHHHHHHH----HHHHHH
Confidence 443222 1111111 1 12234456666666666555555554 211222 223333333333333 333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043025 350 VRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLE 398 (403)
Q Consensus 350 ~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~ 398 (403)
...-..+.-.=++.|---|-+.+-.++...+.||.+........+|...
T Consensus 172 ~~~~lr~al~EERrRyc~lv~~~c~v~~~e~~~~~~~~~~L~~~l~~w~ 220 (223)
T cd07605 172 VSQGLRDALLEERRRYCFLVDKHCSVAKHEIAYHAKAMTLLSTRLPLWQ 220 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 3333333333333344567777888888888888777777776666543
No 153
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=97.46 E-value=0.042 Score=49.67 Aligned_cols=146 Identities=13% Similarity=0.188 Sum_probs=75.6
Q ss_pred HHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 228 FGKAAKLLGACE--GDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDY-VRAVQSIKATIAERANAFRQQCELA 304 (403)
Q Consensus 228 l~~~~~~l~~~e--~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~-~~~~~s~k~~l~~R~~~~~~~~~~~ 304 (403)
+|.++..++..- ....+..+..+|.++..++.+-.........+|.++|..+ ...+..+....+.-+..-+.|....
T Consensus 88 Lg~~mik~gkeLg~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~~~elK~i~hh~KKLEgRRldyD~kk 167 (366)
T KOG1118|consen 88 LGDVMIKHGKELGDDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNLQLKELKDIQHHRKKLEGRRLDYDYKK 167 (366)
T ss_pred HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 455555444322 2345666777888888888877777777777888888776 3333222221111111112222221
Q ss_pred HHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 305 ETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLAS 384 (403)
Q Consensus 305 ~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~ 384 (403)
. + ..|+. +.++. +|..+|+.-.+.+..-+-.+.. ...+=-+.|..+++.|++||+
T Consensus 168 k-------k--------~~K~~--dEelr-------qA~eKfEESkE~aE~sM~nlle-~d~eqvsqL~~Li~aqLdfhr 222 (366)
T KOG1118|consen 168 K-------K--------QGKIK--DEELR-------QALEKFEESKELAEDSMFNLLE-NDVEQVSQLSALIQAQLDFHR 222 (366)
T ss_pred H-------H--------hccCC--hHHHH-------HHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHH
Confidence 1 1 11111 12222 3333333333322222222221 122333557889999999999
Q ss_pred HHHHHHHHHHHHhh
Q 043025 385 SIADAWRTLLPKLE 398 (403)
Q Consensus 385 ~~~~~We~~~~~~~ 398 (403)
+.+.+.+.+...+.
T Consensus 223 qs~~iL~~l~~~l~ 236 (366)
T KOG1118|consen 223 QSTQILQELQMKLF 236 (366)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998876553
No 154
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=97.40 E-value=0.16 Score=50.06 Aligned_cols=175 Identities=15% Similarity=0.220 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----Hhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 043025 209 KHAYRLVKRHRELGESLSDFGKAAKLL-----GACEG---DALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYV 280 (403)
Q Consensus 209 k~~~~l~k~~~~l~~~~~~l~~~~~~l-----~~~e~---~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~ 280 (403)
+....++...+.++.+...|+..++.+ ++.+. -.++..+..+|.....+-+-.-..+..-...+.+||..+.
T Consensus 41 kdg~~li~a~knls~a~~kfa~tl~~f~f~~igd~~tdde~~ia~slkefa~ll~~ve~er~~~v~~Ase~li~PlekFR 120 (812)
T KOG1451|consen 41 KDGKELISALKNLSSAVRKFAQTLQEFKFECIGDAETDDEIFIATSLKEFASLLNQVEDERMRMVGNASESLIEPLEKFR 120 (812)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhheeeeccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHH
Confidence 333344444444444444444444333 22222 1456667777776666655444455555556677777665
Q ss_pred HH-HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 281 RA-VQSIKATIAERANAFR-----QQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMN 354 (403)
Q Consensus 281 ~~-~~s~k~~l~~R~~~~~-----~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~ 354 (403)
.. +...| .+.++.. .|+.+.+.|. | ...| +.+++++..+++..+..|-..+..-.
T Consensus 121 kEqIG~~K----E~KkKydKe~ekfy~~LekHLh--------L---Sskk----esqlqeAD~Qvd~~r~nFfe~SL~YV 181 (812)
T KOG1451|consen 121 KEQIGTLK----EEKKKYDKESEKFYQTLEKHLH--------L---SSKK----ESQLQEADAQVDTQRKNFFEASLQYV 181 (812)
T ss_pred HHHhhhhH----HHHhhhhhhhHHHHHHHHHHhc--------c---ccch----hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 23323 3332221 2222222221 1 1111 46677777788888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043025 355 EEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEACSS 402 (403)
Q Consensus 355 ~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~~~ 402 (403)
.|+...+..+..+|-.-|..|+..-..++.--.++-++|++..+.++.
T Consensus 182 ~~vQeVQErk~FefVEpllafl~slf~f~h~g~el~qDF~pfk~qlq~ 229 (812)
T KOG1451|consen 182 AEVQEVQERKRFEFVEPLLAFLYSLFSFFHVGSELHQDFKPFKDQLQT 229 (812)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHhhhhhHHHHHHH
Confidence 899999999999999999999999999999999999999988877653
No 155
>cd07299 PX_TCGAP The phosphoinositide binding Phox Homology domain of Tc10/Cdc42 GTPase-activating protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. TCGAP (Tc10/Cdc42 GTPase-activating protein) contains N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal proline-rich regions. It is widely expressed in the brain where it is involved in regulating the outgrowth of axons and dendrites and is regulated by the protein tyrosine kinase Fyn. It interacts with cdc42 and TC10beta through its GAP domain and with phosphatidylinositol-(4,5)-bisphosphate [PI(4,5)P2] through its PX domain. It is translocated to the plasma membrane in adipocytes in response to insulin and may be involved in the regulation of insulin-stimulated glucose transport. TCGAP has also been named sorting nexins 26 (SNX26). SNXs
Probab=97.37 E-value=0.0021 Score=48.39 Aligned_cols=71 Identities=21% Similarity=0.275 Sum_probs=50.8
Q ss_pred cceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhc---CCccCCCCCCCccccccCCCHHHHHHHHHHHHHHH
Q 043025 41 QAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY---KGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFV 117 (403)
Q Consensus 41 ~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~---p~~~iP~lP~k~~~~~~~~~~~~i~~R~~~L~~fl 117 (403)
++.++|.|.+.+ .+..|.|.|.|.||..|.+.|-.-. ...-+++||+-...+ ... +.=...|..||
T Consensus 23 ~k~~~flv~V~c-----qgrsW~v~RSyEdfr~LD~~LHrCiyDRr~S~L~eL~~~~~l~---~~~---~~~~~~l~~YL 91 (113)
T cd07299 23 EKDLVFLVQVTC-----QGRSWMVLRSYEDFRTLDAHLHRCIFDRRFSQLLELPPLCEIG---DRL---QILTPLLSEYL 91 (113)
T ss_pred CCceEEEEEEEe-----cCcceEEeeeHHHHHHHHHHHHHHHHhhhhhhhhccCcccccc---chH---HHHHHHHHHHH
Confidence 567899999987 4679999999999999988887322 223467777764433 122 23357889999
Q ss_pred HHHhc
Q 043025 118 NRIAS 122 (403)
Q Consensus 118 ~~~~~ 122 (403)
.++..
T Consensus 92 ~RlS~ 96 (113)
T cd07299 92 NRLTG 96 (113)
T ss_pred HHHHH
Confidence 99875
No 156
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=97.33 E-value=0.12 Score=47.20 Aligned_cols=77 Identities=16% Similarity=0.194 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~ 400 (403)
|+.++.+++...-..++.++..|..--..+...+..++..|...|+..|..|+...-......-...+.+...++.+
T Consensus 158 K~~ka~~~Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~lEe~Ri~~~k~~l~~y~~~~~~~~~~~~~~~e~~~~~~~~i 234 (261)
T cd07648 158 KLKKAQDEYKALVEKYNNIRADFETKMTDSCKRFQEIEESHLRQMKEFLASYAEVLSENHSAVGQVHEEFKRQVDEL 234 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 44555556666666666677777666666778889999999999999999999998777777777777777777664
No 157
>KOG3725 consensus SH3 domain protein SH3GLB [Signal transduction mechanisms]
Probab=97.31 E-value=0.069 Score=46.94 Aligned_cols=167 Identities=17% Similarity=0.221 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---H
Q 043025 221 LGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANA---F 297 (403)
Q Consensus 221 l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~---~ 297 (403)
++.-|.+-|..| + +.++-++++-+++++..+++....+....-..+|+-||+.++.- -.|.+-+.|.-+ -
T Consensus 94 L~qyM~dAg~ef---G--ptTpYG~aLiKvaetekrlG~AeReli~taa~nfLtPlRnFlEG--D~KTI~KERklLqnkR 166 (375)
T KOG3725|consen 94 LSQYMTDAGEEF---G--PTTPYGSALIKVAETEKRLGQAERELIGTAATNFLTPLRNFLEG--DMKTIQKERKLLQNKR 166 (375)
T ss_pred HHHHHHHHHHhc---C--CCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHhhc--cHHHHHHHHHHHhhcc
Confidence 444455544433 1 22356677778888888888877777776777888898887641 123322333322 2
Q ss_pred HHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 298 RQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFET---IVRLMNEEIVRFQEQKTLDMGIAFHN 374 (403)
Q Consensus 298 ~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~---i~~~~~~El~~f~~~r~~~l~~~l~~ 374 (403)
.++..+...+.+.+. ..++..+..|.. .-.+|+++++++..++.+|+. |+..+.+-|..-|. .-.++|.+
T Consensus 167 LDLDAcKsRLKKAKa--ae~q~~rN~~~s-~~~~ie~aEqelRvaQ~EFDrQaEiTrLLLEGIsstH~----nhLrCL~d 239 (375)
T KOG3725|consen 167 LDLDACKSRLKKAKA--AELQTVRNSKTS-GGFTIEQAEQELRVAQAEFDRQAEITRLLLEGISSTHN----NHLRCLRD 239 (375)
T ss_pred cChHHHHHHHHHhhh--hhhhcccccccc-CcchHhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh----hHHHHHHH
Confidence 356666666655433 223222221111 114555666666666666664 44455555555443 33568999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043025 375 FSKGQARLASSIADAWRTLLPKLEACS 401 (403)
Q Consensus 375 ~a~~qi~~~~~~~~~We~~~~~~~~~~ 401 (403)
|++.|..||-++....-++..++.+-.
T Consensus 240 FVeaQmtyYAQcyq~MlDLQkqLg~fp 266 (375)
T KOG3725|consen 240 FVEAQMTYYAQCYQLMLDLQKQLGGFP 266 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999888876543
No 158
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=97.26 E-value=0.13 Score=46.01 Aligned_cols=65 Identities=9% Similarity=0.179 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043025 336 KAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 336 ~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~ 400 (403)
...++.+..+|+.=-..+..-+...+..|...|+++|..|+.....+..+.-+..|.++..+.++
T Consensus 145 ~~~l~~~~~~We~~~~~~~e~fQ~leeeRl~~lk~~l~~y~~~~sd~~~~~~~~~E~~~~~l~~~ 209 (228)
T cd07650 145 VSDLEEARQQWDSQAPFLFELLQAIDEERLNHLKDVLLQFQTHESDYALRTTESAEECMNQLLEF 209 (228)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhhHHHHHHHHHHhCC
Confidence 45566777778777777778888899999999999999999999999999999999999888765
No 159
>cd07278 PX_RICS_like The phosphoinositide binding Phox Homology domain of PX-RICS-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this family include PX-RICS, TCGAP (Tc10/Cdc42 GTPase-activating protein), and similar proteins. They contain N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal extensions. They act as Rho GTPase-activating proteins. PX-RICS is the main isoform expressed during neural development. It is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and PI5P. TCGAP is widely expressed in the brain where it is involved in regulating the outgrowth of axons and d
Probab=97.16 E-value=0.0052 Score=46.48 Aligned_cols=89 Identities=26% Similarity=0.287 Sum_probs=60.1
Q ss_pred CcEEEEEcCceEeC-CC-CcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhc---CCccCCCCCCCccccc
Q 043025 24 PYLSVSVTDPVKLG-NG-VQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY---KGIFIPPLPEKSAVEK 98 (403)
Q Consensus 24 ~~~~v~V~~~~~~~-~~-~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~---p~~~iP~lP~k~~~~~ 98 (403)
..+++...+-.... .| .++-++|.|.+.+ .+..|.|.|.|.||..|.+.|-.-. ...-+++||+-....
T Consensus 5 G~iQ~~l~~~~~~~~~~~~~k~~~~~v~V~c-----qg~sW~VkRSyEdfr~LD~~LHrCiyDRr~S~L~eL~~~~~~~- 78 (114)
T cd07278 5 GSLQVVLSDDGSLKSYKNSGKELVYLVQVQC-----QGKSWLVKRSYDDFRMLDKHLHQCIYDRKFSQLTELPEECIEK- 78 (114)
T ss_pred cceEEEeccCcccCCCCCCCCceEEEEEEEe-----CCcceEEEeeHHHHHHHHHHHHHHHHhhhhhccccCCcccccc-
Confidence 34566666654442 22 3578899999987 5689999999999999988887422 223477777754432
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcC
Q 043025 99 FRFSAEFIEMRRQGLDLFVNRIASH 123 (403)
Q Consensus 99 ~~~~~~~i~~R~~~L~~fl~~~~~~ 123 (403)
..++-+ ...|..||.++...
T Consensus 79 --~~~~~~---~~~l~~YL~RlS~I 98 (114)
T cd07278 79 --REQQNL---HQVLSDYLKRLSSI 98 (114)
T ss_pred --chHHHH---HHHHHHHHHHHHHH
Confidence 233333 47889999988753
No 160
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=97.15 E-value=0.19 Score=45.89 Aligned_cols=77 Identities=12% Similarity=0.137 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~ 400 (403)
|..++.+++....+..+.++..|..--..+...+..++..|...|+.+|..|+.......-......+.+...++++
T Consensus 158 K~~ka~~~y~~~~~ky~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~lk~~L~~~~~~~~~~~~~~~~~~e~~~~~l~~i 234 (261)
T cd07674 158 KTKKAAESLRGSVEKYNRARGDFEQKMLESAQKFQDIEETHLRHMKLLIKGYSHSVEDTHVQIGQVHEEFKQNVENV 234 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHhC
Confidence 33444445555555555566666555555678899999999999999999998765444444555666666655544
No 161
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=97.14 E-value=0.18 Score=45.35 Aligned_cols=153 Identities=11% Similarity=0.184 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043025 242 ALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQ--------SIKATIAERANAFRQQCELAETMKLKEIN 313 (403)
Q Consensus 242 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~--------s~k~~l~~R~~~~~~~~~~~~~l~~k~~~ 313 (403)
.+..++..+-...+.++......+..+...+.++|..|..-+. .+..+.+.+......+..+..+....-..
T Consensus 57 sl~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~ 136 (236)
T cd07651 57 GLKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSK 136 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555566655556666665555555555556666655544322 11222222222222233332222222222
Q ss_pred HHHhc----ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 314 LDKLM----LTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADA 389 (403)
Q Consensus 314 l~kl~----~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~ 389 (403)
++.++ ......+++++..+.++...++.+++++......+..--..|... ...+-+.|+++=+..|.+.+..+-.
T Consensus 137 ~e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~~~-~~~~~~~~Q~lEe~Ri~~lk~~l~~ 215 (236)
T cd07651 137 INSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWNRE-WKAALDDFQDLEEERIQFLKSNCWT 215 (236)
T ss_pred HHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 122345778888888888888888888877666554444455443 3566666777777777777776665
Q ss_pred HHHHHH
Q 043025 390 WRTLLP 395 (403)
Q Consensus 390 We~~~~ 395 (403)
+.+.+.
T Consensus 216 ~a~~~s 221 (236)
T cd07651 216 FANNIS 221 (236)
T ss_pred HHHHHH
Confidence 555543
No 162
>KOG3876 consensus Arfaptin and related proteins [Signal transduction mechanisms]
Probab=96.97 E-value=0.24 Score=43.86 Aligned_cols=204 Identities=12% Similarity=0.107 Sum_probs=129.6
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 043025 184 EESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQR 263 (403)
Q Consensus 184 ~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~ 263 (403)
...|.+|+..-+.+++....+..+.+.+..+..+...+...-..||.+|..|+.-+. .|..-|..-++++..++.
T Consensus 121 rTVD~ElEaQie~Lrd~~rkY~~vl~lar~fS~~l~qmv~tq~~L~dsFadLs~K~~-elq~eft~nseTqr~l~k---- 195 (341)
T KOG3876|consen 121 RTVDLELEAQIEVLRDTKRKYESVLALARAFSHHLTQMVETQHALGDSFADLSQKSP-ELQEEFTYNSETQRLLGK---- 195 (341)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCH-HHHHHhCcCHHHHHHHhh----
Confidence 345888888777777777777677676666666777777777777777877776543 243333333333332221
Q ss_pred HHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHH
Q 043025 264 EAHQLLMNFEEPLKDYVRAVQS-IKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDS 342 (403)
Q Consensus 264 ~~~~~~~~~~e~l~~~~~~~~s-~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~ 342 (403)
.-..+...+.+|+.-+.. +...+.+--.-+.+|+.+.-+.+..+..++.+.-++.+-. -...++.+....+.-
T Consensus 196 ----ngetLl~alnfFIsSvnTl~nkTi~DTL~Ti~qyEsARiEyDayR~Dle~~~l~P~~~~--t~~~le~aq~~~q~h 269 (341)
T KOG3876|consen 196 ----NGETLLGALNFFISSVNTLVNKTIEDTLMTIKQYESARIEYDAYRTDLEELTLGPRDAL--TKNLLEGAQEKFQAH 269 (341)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHhcCCccccc--cccccHHHHHHHHHH
Confidence 122344455555543322 2233444444556777777777777777887753322210 012233334445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043025 343 TRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLE 398 (403)
Q Consensus 343 ~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~ 398 (403)
+++++.+...+..-+...+..|...+..-|.-|-..-..|+.-++...|..+.++.
T Consensus 270 kekYeKlrnDvaiKmkfLeENrIkVmh~QL~llhnAiaAYfsGNak~LE~tlkqf~ 325 (341)
T KOG3876|consen 270 KEKYEKLRNDVAIKMKFLEENRIKVMHKQLELLHNAIAAYFSGNAKQLEQTLKQFN 325 (341)
T ss_pred HHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhc
Confidence 66677777778888888899999999999999988889999999999998887764
No 163
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.97 E-value=0.26 Score=44.16 Aligned_cols=144 Identities=11% Similarity=0.142 Sum_probs=70.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Q 043025 238 CEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRA-VQSIKATIAERANAFRQQ-------CELAETMKL 309 (403)
Q Consensus 238 ~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~-~~s~k~~l~~R~~~~~~~-------~~~~~~l~~ 309 (403)
.+.+.|..++..+-...+.++.+....+..+...+..+|..|..- ....+.+=..-.++...+ ..+.+.+..
T Consensus 53 ~e~Gtl~~sw~~~~~e~E~~a~~H~~la~~L~~ev~~~l~~f~~~~~k~~k~~e~~~~k~~K~~~~~~~~~~kaKk~y~~ 132 (233)
T cd07649 53 QEEGTLGEAWAQVKKSLADEAEVHLKFSSKLQSEVEKPLLNFRENFKKDMKKLDHHIADLRKQLASRYAAVEKARKALLE 132 (233)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777777777777777777777777777777776553 222221111111111111 111111111
Q ss_pred HHHhHH----Hhc----ccCcchHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 310 KEINLD----KLM----LTRSDKVGEAEIEYKELKAE-------SEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHN 374 (403)
Q Consensus 310 k~~~l~----kl~----~~~~~ki~~l~~~i~~~~~~-------~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~ 374 (403)
+-..++ .++ ...++.+.++++...++..+ .+.++.+|+.=-..+-..+..++..|..-|+.+|..
T Consensus 133 ~cke~e~~~~~~~~~k~~~s~~~~~K~~~K~~Ka~~e~~~~ve~y~~~r~~we~~m~~~~~~~Q~~Ee~Rl~~lk~~L~~ 212 (233)
T cd07649 133 RQKDLEGKTQQLEIKLSNKTEEDIKKARRKSTQAGDDLMRCVDLYNQAQSKWFEEMVTTSLELERLEVERIEMIRQHLCQ 212 (233)
T ss_pred HHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 100111 111 11223344444444444444 444444444444445566667777777777777777
Q ss_pred HHHHHHH
Q 043025 375 FSKGQAR 381 (403)
Q Consensus 375 ~a~~qi~ 381 (403)
|...-.+
T Consensus 213 y~~~~~~ 219 (233)
T cd07649 213 YTQLRHE 219 (233)
T ss_pred HHHHHHh
Confidence 7665543
No 164
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.94 E-value=0.31 Score=44.68 Aligned_cols=75 Identities=11% Similarity=0.162 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043025 326 GEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 326 ~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~ 400 (403)
..+.+++...-+.++..+.+|..--..+...+..++..|...|+.+|..|+.......-..-...+++...++++
T Consensus 167 ~ka~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~~k~~l~~y~~~~s~~~~~~~~~~e~ir~~le~~ 241 (269)
T cd07673 167 KKATESYKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIRIKEIIGSYSNSVKEIHIQIGQVHEEFINNMANT 241 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhC
Confidence 344444544555555566666666666778889999999999999999999966665566666777777666654
No 165
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=96.70 E-value=0.44 Score=42.95 Aligned_cols=167 Identities=10% Similarity=0.057 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHH-
Q 043025 220 ELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSI-KATIAERANAF- 297 (403)
Q Consensus 220 ~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~-k~~l~~R~~~~- 297 (403)
+.+..+..|+.-+...+..+.+++..++..+....+.++......+..+...+..+|..|..-...- |.+-..=.++.
T Consensus 37 ~YAK~L~kLa~k~~k~~~~~~Gtl~~aw~~~~~e~e~~a~~H~~la~~L~~ev~~~l~~~~~~~~k~rK~~~~~~~k~qk 116 (239)
T cd07658 37 NYAKGLSKLSGKLSKASKSVSGTLSSAWTCVAEEMESEADIHRNLGSALTEEAIKPLRQVLDEQHKTRKPVENEVDKAAK 116 (239)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443322222235777888888888888888877778777777888888876643221 11110101111
Q ss_pred -------------HHHHHHHHHHHHHHHhHH----------------HhcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 298 -------------RQQCELAETMKLKEINLD----------------KLMLTRSDKVGEAEIEYKELKAESEDSTRRFET 348 (403)
Q Consensus 298 -------------~~~~~~~~~l~~k~~~l~----------------kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~ 348 (403)
..|..+....++.....+ +.....+...+++...+.+++..++.+..++..
T Consensus 117 ~~~~~~~~~~k~kk~y~~~~kE~e~a~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~Kl~~k~~ka~~~~~k~e~~y~~ 196 (239)
T cd07658 117 LLTDWRSEQIKVKKKLHGLARENEKLQDQVEDNKQSCTKQKMLNKLKKSAEVQDKEDEKLEAKRKKGEESRLKAENEYYT 196 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222222222211111 001112334667777788888888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 349 IVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIA 387 (403)
Q Consensus 349 i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~ 387 (403)
....+..--+.|... ..+.-..++++-+..+.+.+.++
T Consensus 197 ~~~~l~~~~~~~~~~-~~~~~~~~Q~~E~~rl~~~k~~l 234 (239)
T cd07658 197 CCVRLERLRLEWESA-LRKGLNQYESLEEERLQHLKHSL 234 (239)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 666554444444322 33444445555555555555554
No 166
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=96.54 E-value=0.62 Score=49.09 Aligned_cols=193 Identities=17% Similarity=0.166 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 191 EKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE--GDALGKAFSELGMKSEALSVKLQREAHQL 268 (403)
Q Consensus 191 ~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e--~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (403)
..+...+..++..+..+.+...++......+..+...|+..+..+...- ...++..+..|+.++..++..........
T Consensus 24 ~~~ee~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~f~~~~~d~~~~~~~~~~~~~~l~~fs~~~~e~~~~~~~L~~q~ 103 (785)
T KOG0521|consen 24 DVFEEDAGTLEKYLNKLLKAMTRKYDAGKEFVQATEQFGKGLKDLFSLGQDEEVISETLQKFSKVLRELGTYHTELRSQL 103 (785)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666777777777777788887777663222 23456788888889998888887777777
Q ss_pred HHhhhHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHhcccC-cchHHHHHHHHHHHHHHHHHHHHH
Q 043025 269 LMNFEEPLKDYVR-AVQSIKATIAERA-NAFRQQCELAETMKLKEINLDKLMLTR-SDKVGEAEIEYKELKAESEDSTRR 345 (403)
Q Consensus 269 ~~~~~e~l~~~~~-~~~s~k~~l~~R~-~~~~~~~~~~~~l~~k~~~l~kl~~~~-~~ki~~l~~~i~~~~~~~~~~~~~ 345 (403)
...+..++..++. .+.-+++. +.+- ++..+|..+.. +..++...+ ++-+.+ .+..+...+..
T Consensus 104 ~~~~~~~l~~f~k~dl~~v~~~-kk~f~ka~~~~d~a~~-------k~~~l~k~~~~~~~~e-------~~~~l~~~r~~ 168 (785)
T KOG0521|consen 104 AHTLSLPLSQFVKGDLHEVKEL-KKLFEKASEEYDLALV-------KYSRLPKKRRSKVKTE-------VEEELAAARRK 168 (785)
T ss_pred HHHHhhhHHHHHHHHHHHhhhh-hHHHHHHHhhHHHHHH-------HhhhhhhccccchhHH-------HHHHHHHHHHH
Confidence 7778877777654 34444443 1111 12334444333 333333222 222222 23355555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043025 346 FETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLE 398 (403)
Q Consensus 346 ~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~ 398 (403)
|....-....-+.--+..+..++-+.+..|+..++.|+++--+.-.++-+.+.
T Consensus 169 f~~~~~~y~~~ln~~q~kk~~~~le~~l~~~~aq~~fF~~g~~l~~~m~p~~~ 221 (785)
T KOG0521|consen 169 FQLTALDYVLALNVLQAKKQFEILETLLGFMHAQINFFKQGEDLLSQMDPYIK 221 (785)
T ss_pred HHHHHHHHHHhhhhhhcccchHHHHHHHHHHHhccchhcccHhHHhhhhHHHH
Confidence 66666555555555666677888889999999999888887555554444443
No 167
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=96.33 E-value=0.81 Score=41.75 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=44.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 322 SDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTL 393 (403)
Q Consensus 322 ~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~ 393 (403)
+..+++++..+.+.+..++.+++++......+...-++|... ....-+.|+++=+..|.+.+.++-...++
T Consensus 167 ~~eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~y~~~-m~~~~~~~Q~lEe~Ri~~lk~~l~~y~~~ 237 (258)
T cd07655 167 PDQVKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPRYMED-MEQVFDKCQEFEEKRLDFFKEILLSYHRH 237 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888999998888888888887766665555555432 34444444444444455554444444433
No 168
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=96.15 E-value=0.99 Score=40.96 Aligned_cols=71 Identities=8% Similarity=0.127 Sum_probs=42.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 323 DKVGEAEIEYKELKAESEDSTRRFETIVRLM---------------NEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIA 387 (403)
Q Consensus 323 ~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~---------------~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~ 387 (403)
.++++++..+.+.....+.+++++..-.... ...+..++..|...++++|..|+.........+.
T Consensus 161 ~~~eK~~~k~~k~~~~~~~a~~~Y~~~l~~~N~~~~~~y~~~~p~~~~~~q~le~~ri~~~k~~l~~~~~~~~~~~~~~~ 240 (251)
T cd07653 161 ADVEKAKANANLKTQAAEEAKNEYAAQLQKFNKEQRQHYSTDLPQIFDKLQELDEKRINRTVELLLQAAEIERKVIPIIA 240 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4566666777766666666666655443333 3345566666666666777666666666555555
Q ss_pred HHHHHH
Q 043025 388 DAWRTL 393 (403)
Q Consensus 388 ~~We~~ 393 (403)
.....+
T Consensus 241 ~~~~~i 246 (251)
T cd07653 241 KCLDGI 246 (251)
T ss_pred HHHHhH
Confidence 554444
No 169
>KOG3651 consensus Protein kinase C, alpha binding protein [Signal transduction mechanisms]
Probab=95.78 E-value=1.5 Score=39.90 Aligned_cols=187 Identities=16% Similarity=0.214 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 043025 202 NHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD-ALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYV 280 (403)
Q Consensus 202 ~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~-~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~ 280 (403)
.-+++|...+.++.+.+.+++..+.+||.+|..++..|++ .-+.+|..||+....+...-...+. .+..++..|.-|+
T Consensus 146 e~Ykglveh~~~ml~a~y~lsqt~k~FGd~F~~i~vhEpQq~AsEAF~~Fgd~HR~ieK~g~~~~k-~ikpmlsDL~tYl 224 (429)
T KOG3651|consen 146 EFYKGLVEHFGDMLQAQYKLSQTQKEFGDIFCDIAVHEPQQTASEAFSSFGDKHRMIEKKGSESAK-PIKPMLSDLQTYL 224 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHhccchhh-hhhHHHHHHHHHH
Confidence 3467788888888999999999999999999999998853 4556788887765544221111110 1111111222222
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHhc----ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 281 RAVQSIKA---TIAERANAFRQQCELAETMKLKEINLDKLM----LTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLM 353 (403)
Q Consensus 281 ~~~~s~k~---~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~----~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~ 353 (403)
.- ++.+ .+++-...--+|-.-+ |.-|+..=+... +.+-=+++.=.-++.-.-..-++++.+|..+...+
T Consensus 225 nk--aiPDTrLTikkYlDvKfeYLSYC--LKvKEMDDEE~~f~AlqEPLYRVeTGNYEYRliLRCRQeaRarF~kmR~DV 300 (429)
T KOG3651|consen 225 NK--AIPDTRLTIKKYLDVKFEYLSYC--LKVKEMDDEEVEFVALQEPLYRVETGNYEYRLILRCRQEARARFMKMRDDV 300 (429)
T ss_pred hc--cCCcchhhhHHhhhhhHHHHHHH--HhhhhccchhhceeeecCceeEeecCCeeeehhHHHHHHHHHHHHHHHHHH
Confidence 21 0111 0100000000111100 111111101100 00000111111223333445667888899988899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 354 NEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTL 393 (403)
Q Consensus 354 ~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~ 393 (403)
+.-+.-.++....|+...|..++....++|+.+++.+.+.
T Consensus 301 leKmELLdqKHv~Di~~qL~~l~~tmak~~~~c~~~L~~~ 340 (429)
T KOG3651|consen 301 LEKMELLDQKHVRDIAQQLAILAKTMAKCQQECAEILKER 340 (429)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9888889999999999999999999999999999987653
No 170
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=95.55 E-value=1.8 Score=39.30 Aligned_cols=150 Identities=11% Similarity=0.127 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--
Q 043025 241 DALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVR--AVQSIKATIAERANAFRQQCELAETMKLKEINLDK-- 316 (403)
Q Consensus 241 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~--~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~k-- 316 (403)
+.|..++..+-...+.++......+..+.....+.++.... |..++..-++.|..+......++..+.++-.++++
T Consensus 60 Gtl~~aw~~i~~etE~ia~~H~~la~~L~~e~~e~~r~~qk~~~~k~~~~~~ke~K~~e~~~~KaQK~~~k~~k~v~~sK 139 (258)
T cd07680 60 GSLERAWGAIMTEADKVSELHQEVKNNLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAK 139 (258)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45666666666667777776666666666666666643221 22222222333333333333333322221111111
Q ss_pred -------------------hc---ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 317 -------------------LM---LTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHN 374 (403)
Q Consensus 317 -------------------l~---~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~ 374 (403)
.. ...++.+++++..+++....++.+++++......+...-++|... ...+-+.+++
T Consensus 140 k~Ye~~Cke~~~A~~~~~~a~~d~~~s~~q~eK~~~k~~k~~~~~~~sk~~Y~~~l~~ln~~~~~y~~~-m~~vfd~~Q~ 218 (258)
T cd07680 140 KAYHLACKEEKLAMTREANSKAEQSVTPEQQKKLQDKVDKCKQDVQKTQEKYEKVLDDVGKTTPQYMEN-MEQVFEQCQQ 218 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHH
Confidence 11 123567888889999999999999999988877777766666543 3444455555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043025 375 FSKGQARLASSIADAWR 391 (403)
Q Consensus 375 ~a~~qi~~~~~~~~~We 391 (403)
+=+..|.|.++++-..-
T Consensus 219 ~Ee~Ri~flk~~l~~~~ 235 (258)
T cd07680 219 FEEKRLVFLKEVLLDIK 235 (258)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55556666666554433
No 171
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=95.39 E-value=2 Score=38.89 Aligned_cols=67 Identities=10% Similarity=0.126 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 330 IEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQ----KTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 330 ~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~----r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~ 396 (403)
.+++++...+......++...+.-..-+..+... ...++..+|..|=.........+.+.|..+...
T Consensus 161 ~~~eK~~~k~~k~~~~~~~a~~~Y~~~l~~~N~~~~~~y~~~~p~~~~~~q~le~~ri~~~k~~l~~~~~~ 231 (251)
T cd07653 161 ADVEKAKANANLKTQAAEEAKNEYAAQLQKFNKEQRQHYSTDLPQIFDKLQELDEKRINRTVELLLQAAEI 231 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777666666666666443 345666676666666666666666666555443
No 172
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=95.33 E-value=1.7 Score=37.53 Aligned_cols=129 Identities=16% Similarity=0.195 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccC
Q 043025 242 ALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTR 321 (403)
Q Consensus 242 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~ 321 (403)
.+..++..+....+.++......+..+...+.+++..+...... .|.....+...+.+.+...-..+.+
T Consensus 54 t~~~~w~~~~~e~~~~a~~h~~~a~~l~~~i~~~~~~~~~~~~~------~rk~~~~~~~~~~k~~~~~~~~~~k----- 122 (191)
T cd07610 54 SLGTSWNSLREETESAATVHEELSEKLSQLIREPLEKVKEDKEQ------ARKKELAEGEKLKKKLQELWAKLAK----- 122 (191)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 56666777766677777666666665555555665555554332 1444444455554444443333333
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 322 SDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSI 386 (403)
Q Consensus 322 ~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~ 386 (403)
+..+++.....+......+|...-.....-+......+...++.++..|+.........+
T Consensus 123 -----k~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~q~~~e~r~~~~~~~l~~~~~~~~~~~~~~ 182 (191)
T cd07610 123 -----KADEEYREQVEKLNPAQSEYEEEKLNKIQAEQEREEERLEILKDNLKNYINAIKEIPQKI 182 (191)
T ss_pred -----hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 233444444444444555554432222222444445556666666666665554444433
No 173
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=94.94 E-value=3.3 Score=38.81 Aligned_cols=66 Identities=14% Similarity=0.228 Sum_probs=44.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 043025 321 RSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFH---NFSKGQARLASSIADAW 390 (403)
Q Consensus 321 ~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~---~~a~~qi~~~~~~~~~W 390 (403)
.++.+.++++.+++++++++..+.+++. ...||.++......+|...|. .|-...+.|.+.++-.-
T Consensus 175 speq~kKlqdrveK~k~evqktkekYek----tl~el~~yt~~YmE~MeqvFe~CQ~fE~~Rl~Ffkeil~~v 243 (472)
T KOG2856|consen 175 SPEQLKKLQDRVEKCKQEVQKTKEKYEK----TLAELNKYTPVYMEDMEQVFEQCQQFEEKRLQFFKEILLKV 243 (472)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888999999999999999988876 456666666666666666554 34444455555544433
No 174
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=94.70 E-value=2.8 Score=36.84 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 353 MNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIAD 388 (403)
Q Consensus 353 ~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~ 388 (403)
+..|-.|| -.|-++|.-+++.++.-..+...
T Consensus 182 LiEER~Rf-----c~Fvs~l~pVl~~e~~ml~E~~h 212 (231)
T cd07643 182 LIEERGRF-----CTFVSFLKPVLDEEISMLGEVTH 212 (231)
T ss_pred HHHHHHHH-----HHHHHHHhHHHHHHHHHHhhHHH
Confidence 44555555 56778888888888776665543
No 175
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=94.45 E-value=3.2 Score=36.42 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 189 EYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAA 232 (403)
Q Consensus 189 ~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~ 232 (403)
++..+...+..+...+..+.+....+.....++|..+..||..-
T Consensus 12 ~v~~le~~l~~l~~~~~~~~k~~~~l~~~~~elg~~~~~Ls~~e 55 (218)
T cd07596 12 YILKLEEQLKKLSKQAQRLVKRRRELGSALGEFGKALIKLAKCE 55 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444445555555555555555555555555555555555443
No 176
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=93.94 E-value=4.6 Score=36.36 Aligned_cols=73 Identities=10% Similarity=0.086 Sum_probs=46.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 322 SDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLP 395 (403)
Q Consensus 322 ~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~ 395 (403)
++.+++++..++++...++.++.+|......+..--++|...- ...-+.|.+.=...|.|.+.++=..-+.+.
T Consensus 153 ~ke~~K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~~~w~~~~-~~~c~~fq~lEeeRi~f~k~~lw~~~n~~s 225 (240)
T cd07672 153 VKQQEKLFAKLAQSKQNAEDADRLYMQNISVLDKIREDWQKEH-VKACEFFEKQECERINFFRNAVWTHVNQLS 225 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3456778888888888888888888877665554445555432 244444444466667777766655555443
No 177
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=93.02 E-value=6.8 Score=35.55 Aligned_cols=152 Identities=10% Similarity=0.091 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH------HHHHHHH------HHHHHHHH----HHHHHHHHHH
Q 043025 242 ALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYV------RAVQSIK------ATIAERAN----AFRQQCELAE 305 (403)
Q Consensus 242 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~------~~~~s~k------~~l~~R~~----~~~~~~~~~~ 305 (403)
.|..++..+-...+.++......+..+...+.+++...- .++..++ +.+..-.+ .+........
T Consensus 61 TL~~sw~~~~~e~E~ia~~H~~l~~~L~~E~~e~ir~~QKe~~hk~~~~g~ke~K~~e~~f~kaqK~w~k~~kk~~~sKk 140 (258)
T cd07681 61 TLEKAWHAFLTAAERLSEIHLELRENLVGEDSEKVRAWQKEAFHKQMIGGFRESKEAEEGFRKAQKPWVKKLKEVESSKK 140 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 566777777777777777777767766666677775521 1221222 22211111 1112222222
Q ss_pred HHHHH--HHhHHHh-------c-ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 306 TMKLK--EINLDKL-------M-LTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNF 375 (403)
Q Consensus 306 ~l~~k--~~~l~kl-------~-~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~ 375 (403)
..... ++.++.. . ...++.+.+++..++++..+++.++.++......+..--++|... ....-+.++++
T Consensus 141 ~Y~~~ck~e~~a~~~e~~~k~~~~~~~~q~~K~~~kleK~~~~~~k~~~~Y~~~v~~L~~~~~~w~e~-m~~~~d~~Q~~ 219 (258)
T cd07681 141 GYHAARKDERTAQTRETHAKADSTVSQEQLRKLQDRVEKCTQEAEKAKEQYEKALEELNRYNPRYMED-MEQAFEICQEA 219 (258)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHH
Confidence 22211 1222211 1 223567788888888888888888888887766665555555433 23334455555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043025 376 SKGQARLASSIADAWRTLL 394 (403)
Q Consensus 376 a~~qi~~~~~~~~~We~~~ 394 (403)
=+..|.|.+.++......+
T Consensus 220 EeeRi~flK~~L~~~~~~l 238 (258)
T cd07681 220 ERKRLCFFKEMLLDLHQHL 238 (258)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5556777776666655554
No 178
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=92.84 E-value=7 Score=35.18 Aligned_cols=95 Identities=8% Similarity=0.106 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHhHHHhc-ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 299 QQCELAETMKLKEINLDKLM-LTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSK 377 (403)
Q Consensus 299 ~~~~~~~~l~~k~~~l~kl~-~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~ 377 (403)
.|...+..++..+...++.. +..+..+++++..+.+....++.++++|......+..--..|... ....-+.|+++=+
T Consensus 128 ~Y~~~C~e~e~a~~~~~~~~~~~~~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~~~~~-~~~~~~~~Q~lEe 206 (239)
T cd07647 128 SYEQKCREKDKAEQAYEKSSSGAQPKEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDARVEWESE-HATACQVFQNMEE 206 (239)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 34444444443333333333 223456777778888877777777777766544433333334332 3334455555555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043025 378 GQARLASSIADAWRTLL 394 (403)
Q Consensus 378 ~qi~~~~~~~~~We~~~ 394 (403)
..|.+.+..+-...+++
T Consensus 207 ~Ri~~lk~~l~~y~n~i 223 (239)
T cd07647 207 ERIKFLRNALWVHCNLG 223 (239)
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 55666555554444443
No 179
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=92.30 E-value=8.2 Score=34.68 Aligned_cols=84 Identities=8% Similarity=0.035 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHhc---ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 297 FRQQCELAETMKLKEINLDKLM---LTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFH 373 (403)
Q Consensus 297 ~~~~~~~~~~l~~k~~~l~kl~---~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~ 373 (403)
...|+.+....+..+.+.++.- +....+++++++.+.+...++..+++++-..-......-..|...-..++-+.|+
T Consensus 132 Kk~Y~~~~~e~e~Ar~k~e~a~~~~~~~~~~~eKak~k~~~~~~k~~~akNeY~l~l~~aN~~q~~yY~~~lP~ll~~lQ 211 (237)
T cd07657 132 KSEYQKLLEDYKAAKSKFEEAVVKGGRGGRKLDKARDKYQKACRKLHLCHNDYVLALLEAQEHEEDYRTLLLPGLLNSLQ 211 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3344444444444444444432 1123467888888888888888899998877777766666666555555555555
Q ss_pred HHHHHHH
Q 043025 374 NFSKGQA 380 (403)
Q Consensus 374 ~~a~~qi 380 (403)
++-+..|
T Consensus 212 ~l~E~ri 218 (237)
T cd07657 212 SLQEEFI 218 (237)
T ss_pred HHHHHHH
Confidence 5444333
No 180
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=92.05 E-value=8.7 Score=34.45 Aligned_cols=55 Identities=5% Similarity=0.136 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 325 VGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQ 379 (403)
Q Consensus 325 i~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~q 379 (403)
+...++++.....+++..+..|..--..+...+..++..|..-|+..|..|+..-
T Consensus 166 ~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~~a~~~ 220 (236)
T cd07651 166 INSSRRDYQNAVKALRELNEIWNREWKAALDDFQDLEEERIQFLKSNCWTFANNI 220 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566777777777777777776677888999999999999999998888653
No 181
>KOG3891 consensus Secretory vesicle-associated protein ICA69, contains Arfaptin domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.92 E-value=11 Score=35.19 Aligned_cols=197 Identities=14% Similarity=0.134 Sum_probs=117.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 186 SNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREA 265 (403)
Q Consensus 186 ~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~ 265 (403)
.|.++...-+..+.+....-.|.+.+....++...++..-..||..+..=+....+.-+..+..+|.+.--.+.-
T Consensus 48 SDaeLDaklelf~Si~~T~l~L~kiId~Yq~rl~~lSqeenvlGkfLkeqgkrdkT~agkmm~atgkal~fssqq----- 122 (436)
T KOG3891|consen 48 SDAELDAKLELFHSIQRTCLDLLKIIDLYQKRLCDLSQEENVLGKFLKEQGKRDKTEAGKMMIATGKALCFSSQQ----- 122 (436)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHhHHhhhhHHH-----
Confidence 356665555666666666667788888888888888888888998888777665444444566666554333221
Q ss_pred HHHHHhhhHHHHHHHHHHHHHH-----H---HHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHH
Q 043025 266 HQLLMNFEEPLKDYVRAVQSIK-----A---TIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKA 337 (403)
Q Consensus 266 ~~~~~~~~e~l~~~~~~~~s~k-----~---~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~ 337 (403)
...+..||-.+..-+..++ + .+++-+++-.+|..+.-.+.+-- +.| +++--.. -....++..
T Consensus 123 ---rla~r~pl~r~~~ev~vF~~RAI~Dt~qTi~~meq~RTEYRgaLlWMK~~S---qEL---DPdt~k~-meKFRkaQt 192 (436)
T KOG3891|consen 123 ---RLALRIPLSRFYQEVSVFRERAISDTSQTINRMEQCRTEYRGALLWMKDVS---QEL---DPDTDKQ-MEKFRKAQT 192 (436)
T ss_pred ---HHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhH---hhc---CcchhhH-HHHHHHHHH
Confidence 1123334444333322211 1 12222222223333332222211 111 1211111 123344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043025 338 ESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKL 397 (403)
Q Consensus 338 ~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~ 397 (403)
.+..++..|+...-.+..-+.-.-..|...+..+|..|......|+++....++.+-..+
T Consensus 193 ~Vr~aK~nfDklkmD~~QKVDLL~AsRcNllSh~Lt~YqteL~~f~~Kta~tf~ti~ea~ 252 (436)
T KOG3891|consen 193 QVRSAKENFDKLKMDVCQKVDLLGASRCNLLSHVLTTYQTELLEFWSKTARTFETIHEAC 252 (436)
T ss_pred HHHHHHhccchhhhHHHHHHhHhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677777888888877888888888889999999999999999999999888888876554
No 182
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=91.22 E-value=8.3 Score=32.60 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 191 EKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLL 235 (403)
Q Consensus 191 ~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l 235 (403)
..++..++.+....+.+......+......++..+.++|..+...
T Consensus 3 ~~~~~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 47 (194)
T cd07307 3 DELEKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPDL 47 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 345556666666666666666666777777777777777666544
No 183
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=91.17 E-value=9.7 Score=33.28 Aligned_cols=117 Identities=11% Similarity=0.120 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 199 ELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE-----GDALGKAFSELGMKSEALSVKLQREAHQLLMNFE 273 (403)
Q Consensus 199 ~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e-----~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (403)
.+...+.+|........+....+..+-.-+..++..++..- +..|+.++-.+++....+..............+.
T Consensus 17 qfnP~lrnLv~lGk~Y~KA~~a~~~A~~~y~dal~Kige~A~~s~~SkeLG~~L~qi~ev~r~i~~~le~~lK~Fh~Ell 96 (226)
T cd07645 17 QFNPGLRNLINLGKNYEKAVNAMVLAGKAYYDGVAKIGEIAAVSPVSKELGHVLMEISDVHKKLNDSLEENFKKFHREII 96 (226)
T ss_pred hcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555432 2467777777777776666544444443333333
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc
Q 043025 274 EPLKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLM 318 (403)
Q Consensus 274 e~l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~ 318 (403)
.+|..=.. .+.-+.. .+.....++..-.+.|++....|.|++
T Consensus 97 ~~LE~k~elD~kyi~a---~~Kkyq~E~k~k~dsLeK~~seLKK~R 139 (226)
T cd07645 97 AELERKTDLDVKYMTA---TLKRYQTEHKNKLDSLEKSQADLKKIR 139 (226)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332221 1111122 223356677777778888888888887
No 184
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=90.51 E-value=8.9 Score=31.70 Aligned_cols=36 Identities=14% Similarity=0.381 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 043025 282 AVQSIKATIAERANAFRQQCELAETMKLKEINLDKL 317 (403)
Q Consensus 282 ~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl 317 (403)
.+..+-++|..|..-....+.+...+.++....+.+
T Consensus 36 vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l 71 (151)
T PF11559_consen 36 VINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERL 71 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 334444445555544444455554444444444443
No 185
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=90.00 E-value=14 Score=33.19 Aligned_cols=69 Identities=9% Similarity=0.157 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 331 EYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEA 399 (403)
Q Consensus 331 ~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~ 399 (403)
+++++......+..++...-+.=..-|..+.......+...|=+..+..-...+..+..|..++..+-.
T Consensus 162 ~~eKak~k~~~~~~k~~~akNeY~l~l~~aN~~q~~yY~~~lP~ll~~lQ~l~E~ri~~~k~~l~~~~~ 230 (237)
T cd07657 162 KLDKARDKYQKACRKLHLCHNDYVLALLEAQEHEEDYRTLLLPGLLNSLQSLQEEFITQWKKILQEYLR 230 (237)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555444444555566666666666666666666777777777777777655443
No 186
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=89.80 E-value=14 Score=32.78 Aligned_cols=52 Identities=15% Similarity=0.280 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhh
Q 043025 188 PEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGE------SLSDFGKAAKLLGACE 239 (403)
Q Consensus 188 ~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~------~~~~l~~~~~~l~~~e 239 (403)
|.|+++-.--..|...+..+........+....++. .-.++|.++..++...
T Consensus 10 P~~e~lv~~~~kY~~al~~~~~a~~~f~dal~ki~~~A~~s~~s~~lG~~L~~~s~~~ 67 (219)
T PF08397_consen 10 PAWENLVSLGKKYQKALRAMSQAAAAFFDALQKIGDMASNSRGSKELGDALMQISEVH 67 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHH
Confidence 556666666666667776666666665555555542 2456777777776654
No 187
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=89.74 E-value=14 Score=32.87 Aligned_cols=45 Identities=24% Similarity=0.297 Sum_probs=34.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKA 231 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~ 231 (403)
-.++..+...+..+...+..+.+.-..+.....+++..+..||..
T Consensus 30 ~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~ 74 (236)
T PF09325_consen 30 KDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKS 74 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 556777888888888888888888888888888887777765543
No 188
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=89.15 E-value=16 Score=32.51 Aligned_cols=87 Identities=8% Similarity=0.001 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 296 AFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNF 375 (403)
Q Consensus 296 ~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~ 375 (403)
+-..|..+.+..+..+.+.++. ..+...+++.....++..++..+.+++-.--..+..=-.+|...-...+.+.|++.
T Consensus 136 ~Kk~Y~~~c~~~e~AR~K~eka--s~~K~~~K~~EKy~~m~~KL~~~hN~YlL~I~~An~~kdkyy~q~lP~LLd~lQ~l 213 (237)
T cd07685 136 LKSQYRSLAKDSAQAKRKYQEA--SKDKDRDKAKEKYVKSLWKLYALHNEYVLAVRAAQLHHQHHYQRILPGLLESLQSL 213 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3445666666666666555553 33345667777777777778888888866544444434444444445555555555
Q ss_pred HHHHHHHHH
Q 043025 376 SKGQARLAS 384 (403)
Q Consensus 376 a~~qi~~~~ 384 (403)
-+..+..-+
T Consensus 214 nE~~v~~Ln 222 (237)
T cd07685 214 HEEMVLILK 222 (237)
T ss_pred HHHHHHHHH
Confidence 444444333
No 189
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=89.04 E-value=17 Score=32.94 Aligned_cols=95 Identities=11% Similarity=0.161 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHhHHHhccc---CcchHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHH
Q 043025 299 QQCELAETMKLKEINLDKLMLT---RSDKVGEAEIEYKELKAESEDSTRRFETIVR---------------LMNEEIVRF 360 (403)
Q Consensus 299 ~~~~~~~~l~~k~~~l~kl~~~---~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~---------------~~~~El~~f 360 (403)
.|..++...++.....++..+. ....++++++.....++..+.+++++..--. .+...+..+
T Consensus 136 ~Y~~acke~E~A~~~~~ka~~d~~~sk~~~eK~k~~~~~~~~~~e~aKn~Y~~~l~~~N~~q~~~Y~e~mp~vfd~lQ~l 215 (253)
T cd07676 136 RFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKAEYSSYLQKFNKEQHEHYYTHIPNIFQKIQEM 215 (253)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4444444444444333343321 3345567777777777777777766433222 234555667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 361 QEQKTLDMGIAFHNFSKGQARLASSIADAWRTL 393 (403)
Q Consensus 361 ~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~ 393 (403)
+..|...|+.+|..|+...-.....+....+.+
T Consensus 216 ee~Ri~~l~e~l~~~~~~e~~~~~~i~~cl~~i 248 (253)
T cd07676 216 EERRIGRVGESMKTYAEVDRQVIPIIGKCLDGI 248 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 777777777777777766666555555544443
No 190
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=88.90 E-value=16 Score=32.27 Aligned_cols=110 Identities=13% Similarity=0.110 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 043025 203 HLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE-----GDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLK 277 (403)
Q Consensus 203 ~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e-----~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~ 277 (403)
.+.++.....++.+....+..+-.-|..+|..++..- +..|+.++-.++.....+....+.........+..+|.
T Consensus 23 ~lrnlv~~G~~Y~kal~a~~~a~~~y~dAl~Kige~A~~s~gSkeLG~~L~~m~~~hr~i~~~le~~lk~Fh~eli~pLE 102 (232)
T cd07646 23 SLRNFIAMGKNYEKALASVTFAAKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLE 102 (232)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555555555566555432 24677777777777766655555555554444554443
Q ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc
Q 043025 278 DYV----RAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLM 318 (403)
Q Consensus 278 ~~~----~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~ 318 (403)
.=+ .++.+ -......++....+.+++-+..|-|++
T Consensus 103 ~k~E~D~k~i~a------~~Kky~~e~k~k~~sleK~qseLKKlR 141 (232)
T cd07646 103 QKVELDSRYLTA------ALKKYQTEHRSKGESLEKCQAELKKLR 141 (232)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 23222 122233444444455555555555554
No 191
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.37 E-value=33 Score=35.35 Aligned_cols=77 Identities=19% Similarity=0.257 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~ 400 (403)
++.++..++..+...++.++++|+.=...+...+...+..+...|+..|..|+..--.-+-......+.+...++.+
T Consensus 147 ~i~~~~~~y~~~~~~~~~vr~~w~~~~~~~c~~fQ~~Ee~rl~~lk~~l~~~~~~is~~~~~~~q~~E~~k~~le~~ 223 (611)
T KOG2398|consen 147 KIKEAREEYRSLVAKLEKVRKDWEQEMTDLCLKFQEIEESRLSFLKEELWLFANQISESCVKIDQVMEEFKLTLESC 223 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhccC
Confidence 45555666666777777777777766666777788888888888888888888888777777777777777666543
No 192
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=88.24 E-value=20 Score=32.54 Aligned_cols=153 Identities=13% Similarity=0.130 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH------HHHHHHHHHHH----------HHHH-------HH
Q 043025 241 DALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYV------RAVQSIKATIA----------ERAN-------AF 297 (403)
Q Consensus 241 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~------~~~~s~k~~l~----------~R~~-------~~ 297 (403)
+.|..++..+-...+.++.+.......+.....+.++..- .++..+|+.-. --.. +-
T Consensus 60 GTl~~aw~~~~~Eae~~s~~H~~l~~~L~~e~~e~ir~wQKe~~hk~~~~~~Ke~k~~e~~f~KaQKpw~k~~kkv~~aK 139 (258)
T cd07679 60 GTVEKAWCALMSEAEKVSELHLEVKASLMNEDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAK 139 (258)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3566677766666777777666666665555555554421 22333333211 0001 11
Q ss_pred HHHHHHHHHHHHHHHhHHHhc---ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 298 RQQCELAETMKLKEINLDKLM---LTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHN 374 (403)
Q Consensus 298 ~~~~~~~~~l~~k~~~l~kl~---~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~ 374 (403)
..|..++........+..... ...++.+.++++.+++.+++++.++..++..-..+..--++|.... ...-+.+++
T Consensus 140 k~Y~~aCk~e~~A~~~~~~~~~d~~~~~~q~~K~~~k~~k~~~~~~k~~~~Y~~~l~~L~~~~~~y~e~m-~~~fe~~Q~ 218 (258)
T cd07679 140 KAYHTACKEEKLATSREANSKADPALNPEQLKKLQDKVEKCKQDVLKTKEKYEKSLKELDQTTPQYMENM-EQVFEQCQQ 218 (258)
T ss_pred HHHHHHHHhHHHHHHHHHhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHH
Confidence 122222222222211111111 1245678888888999999988888888776555555555554432 222334455
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043025 375 FSKGQARLASSIADAWRTLL 394 (403)
Q Consensus 375 ~a~~qi~~~~~~~~~We~~~ 394 (403)
+=...|.|.++++-..-+.+
T Consensus 219 ~E~eRi~F~K~~l~~~~~~l 238 (258)
T cd07679 219 FEEKRLRFFREVLLEVQKHL 238 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 55556666666655444433
No 193
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=87.16 E-value=20 Score=31.37 Aligned_cols=45 Identities=20% Similarity=0.379 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 043025 188 PEYEKLKHYIFELENHLAEAQKHAYRLVKRHR-------ELGESLSDFGKAA 232 (403)
Q Consensus 188 ~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~-------~l~~~~~~l~~~~ 232 (403)
..|......+..+...++........+..... .++.++.+++..+
T Consensus 33 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 84 (229)
T PF03114_consen 33 EKFKQLEESIKKLQKSLKKYLDSIKKLSASQKNMKSPFEELADALIELGSEF 84 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHhccc
Confidence 34444444455555444444444444444444 5555555554443
No 194
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=86.66 E-value=24 Score=31.82 Aligned_cols=73 Identities=4% Similarity=0.097 Sum_probs=44.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 321 RSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLL 394 (403)
Q Consensus 321 ~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~ 394 (403)
.+..+++++..+.+..+.++.++++|......+..=-++|... ....-+.++++=+..|.|.+.++=..-+.+
T Consensus 151 t~keleK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~w~~~-~~~~~~~~Q~lEeeRi~f~K~~lw~~~n~~ 223 (242)
T cd07671 151 NPKQSEKSQNKAKQCRDAATEAERVYKQNIEQLDKARTEWETE-HILTCEVFQLQEDDRITILRNALWVHCNHF 223 (242)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 3455778888888888888888888876655555555555433 233344455555555666666654444443
No 195
>cd07607 BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be i
Probab=85.63 E-value=21 Score=30.29 Aligned_cols=145 Identities=15% Similarity=0.174 Sum_probs=78.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHH
Q 043025 240 GDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRA--VQSIKATIAERANAF-RQQCELAETMKLKEINLDK 316 (403)
Q Consensus 240 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~--~~s~k~~l~~R~~~~-~~~~~~~~~l~~k~~~l~k 316 (403)
+..|+.+-..+|.+...+-.-.......+..++.+||+.++.- +.-.+. |..|-..+ ++.+.-.....+++.+...
T Consensus 56 ~~~LsrAa~~yG~a~~~mEkEre~l~r~l~~QV~ePLRaMv~GaPLEDARh-L~qrYdRmRQeaE~qa~eV~RRq~k~re 134 (209)
T cd07607 56 NTALSRASLHYGSARNQMEKERENLHRVLSEQVAEPLRAMVYGAPLEDARH-LKQRYDRLRQEVEAQAAEVARRRSKDKE 134 (209)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3467777777777776665555566667777888888887652 222233 22332222 2222222222222222111
Q ss_pred hcccCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 317 LMLTRSD---KVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTL 393 (403)
Q Consensus 317 l~~~~~~---ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~ 393 (403)
. ++.++ |+..++..+.++ +.....+.+..-.-+.-.+.....---.-|..+++..-.||+..+.++..+
T Consensus 135 s-~~~~e~~~KL~~AE~Kl~el-------ks~M~~LGKEA~aAm~aVEaQQQrlTlqRL~amVeaEr~Yhqrv~~ILd~l 206 (209)
T cd07607 135 S-GGNPDNAAKLQSAESKLDEL-------KSSMNTLGKEATSAMLAVEDQQQQVTLQRLLAMVEAERAYHQRAADILDKL 206 (209)
T ss_pred c-CCChHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 22333 344444444444 444444444444444444444444455668889999999999999888765
No 196
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=85.34 E-value=39 Score=33.07 Aligned_cols=51 Identities=8% Similarity=0.087 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 325 VGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFS 376 (403)
Q Consensus 325 i~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a 376 (403)
+-.+++.|+..+=+++++...+..-...+.+++..|... ..+|+-.+++-+
T Consensus 553 ~l~~eq~vqs~~i~ld~~~~~~n~~r~~i~k~V~~v~~~-~~~fk~~IQssl 603 (622)
T COG5185 553 ILDAEQLVQSTEIKLDELKVDLNRKRYKIHKQVIHVIDI-TSKFKINIQSSL 603 (622)
T ss_pred HhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHhhH
Confidence 333444444444444444444444444455555555443 244444444333
No 197
>cd07644 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. This group is composed of uncharacterized proteins known as BAIAP2L2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2). They contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The related proteins, BAIAP2L1 and IRSp53, function as regulators of membrane dynamics and the actin cytoskeleton. The IMD domain binds and bundles actin filaments, binds membranes and produces membrane protrusions, and interacts with the small GTPase Rac.
Probab=83.90 E-value=28 Score=30.21 Aligned_cols=113 Identities=12% Similarity=0.127 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 043025 200 LENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE-----GDALGKAFSELGMKSEALSVKLQREAHQLLMNFEE 274 (403)
Q Consensus 200 le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e-----~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 274 (403)
+...+.+|........+....++.+-.-+..++..++..- ...|+.++-.++++...+..-...........+.-
T Consensus 18 FNP~lrnlv~lGk~Y~kA~~a~t~aa~~Yf~Al~KiGe~A~~s~~s~~LG~vLmqisev~r~i~~~le~~lk~FH~ell~ 97 (215)
T cd07644 18 FNPALENLVYLGNNYLRAFHALSEAAEVYFSAIAKIGEQALQSLTSQSLGEILIQMSETQRKLSADLEVVFQTFHVDLLQ 97 (215)
T ss_pred cChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555565555432 23577777677766666655444333332222222
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc
Q 043025 275 PLKDY----VRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLM 318 (403)
Q Consensus 275 ~l~~~----~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~ 318 (403)
+|..= ..|+.+ .+.....++..-.+.+++....+.+++
T Consensus 98 ~LEkk~elD~kyi~~------s~KkYq~E~r~k~dsleK~~selkk~r 139 (215)
T cd07644 98 HMDKNTKLDMQFIED------SRRVYELEYRHRAANLEKCMSELWRME 139 (215)
T ss_pred HHHHHHHHhHHHHHH------HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 22211 122221 222334455555555666655555555
No 198
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=83.74 E-value=63 Score=34.23 Aligned_cols=19 Identities=16% Similarity=0.363 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043025 279 YVRAVQSIKATIAERANAF 297 (403)
Q Consensus 279 ~~~~~~s~k~~l~~R~~~~ 297 (403)
|+.+...+++.+..|...+
T Consensus 552 Yi~~~~~ar~ei~~rv~~L 570 (717)
T PF10168_consen 552 YIEKQDLAREEIQRRVKLL 570 (717)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555566666665544
No 199
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=83.10 E-value=36 Score=30.86 Aligned_cols=96 Identities=9% Similarity=0.210 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhcc---cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HH
Q 043025 293 RANAFRQQCELAETMKLKEINLDKLML---TRSDKVGEAEIEYKELKAESEDSTRRFETIVRL---------------MN 354 (403)
Q Consensus 293 R~~~~~~~~~~~~~l~~k~~~l~kl~~---~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~---------------~~ 354 (403)
-.+.-..|..++...++.+...++... .....++++++....-.+..+.+++++..--.. +.
T Consensus 129 leksKk~Y~~acke~E~A~~k~~ka~~d~~~tk~~~eK~k~~~~~~~q~~e~aKn~Y~~~L~~~N~~q~k~Y~e~mP~vf 208 (252)
T cd07675 129 MDNSKKKFERECREAEKAQQSYERLDNDTNATKSDVEKAKQQLNLRTHMADESKNEYAAQLQNFNGEQHKHFYIVIPQIY 208 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 333444455555554444444444331 122335566666666666666666655544333 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 355 EEIVRFQEQKTLDMGIAFHNFSKGQARLASSIAD 388 (403)
Q Consensus 355 ~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~ 388 (403)
..+..++..|...|+.++..+++......-.+..
T Consensus 209 d~lQ~leE~Ri~~l~e~~~~~~~~E~~v~~~i~~ 242 (252)
T cd07675 209 KQLQEMDERRTVKLSECYRGFADSERKVIPIISK 242 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 5566666666666666666666665544444333
No 200
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=82.98 E-value=34 Score=30.58 Aligned_cols=87 Identities=5% Similarity=0.003 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 296 AFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNF 375 (403)
Q Consensus 296 ~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~ 375 (403)
+-..|..+++..+.++.+.++.-. +..+.++++..+.+...++..+++++-..-.....=-.+|...-...+.+.|+++
T Consensus 132 ~K~~Y~~~~~~~e~ar~K~~~a~~-~gk~~~Ka~~k~~~~~~km~~~kN~Yll~i~~aN~~k~~Yy~~~lP~lLd~lQ~l 210 (234)
T cd07686 132 LKCSYRQLTKEVNSAKEKYKDAVA-KGKETEKARERYDKATMKLHMLHNQYVLAVKGAQLHQHQYYDFTLPLLLDSLQKM 210 (234)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhhh-cccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666555554321 1124677888999999999999999877666666666666655566666666666
Q ss_pred HHHHHHHH
Q 043025 376 SKGQARLA 383 (403)
Q Consensus 376 a~~qi~~~ 383 (403)
-+..|..-
T Consensus 211 ~E~rv~~l 218 (234)
T cd07686 211 QEEMIKAL 218 (234)
T ss_pred HHHHHHHH
Confidence 55555443
No 201
>PRK04863 mukB cell division protein MukB; Provisional
Probab=82.50 E-value=1e+02 Score=35.66 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=31.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 185 ESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKA 231 (403)
Q Consensus 185 e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~ 231 (403)
||++.....+.....++..|..+.........+...+...+..|...
T Consensus 834 ~pe~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 880 (1486)
T PRK04863 834 DPEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRL 880 (1486)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788888889988888888887766655555544444444444333
No 202
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=80.95 E-value=32 Score=35.14 Aligned_cols=51 Identities=8% Similarity=0.131 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 325 VGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNF 375 (403)
Q Consensus 325 i~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~ 375 (403)
+.+++.++....+.++.+++++..-.+.+...+..+.+....|+.+....|
T Consensus 221 ~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~~~ 271 (555)
T TIGR03545 221 FDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLENKY 271 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccHhHHHHHHHHh
Confidence 344445555556666666666666666666666666666666666665443
No 203
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=80.41 E-value=43 Score=30.03 Aligned_cols=57 Identities=16% Similarity=0.088 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 325 VGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQAR 381 (403)
Q Consensus 325 i~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~ 381 (403)
+..+++++...-..++.++.+|..--..+...+..++..|..-|+..|-.|+..--.
T Consensus 169 ~~~a~~~Y~~~v~~l~~~~~~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~y~n~is~ 225 (239)
T cd07647 169 AEEADSAYKSSIGCLEDARVEWESEHATACQVFQNMEEERIKFLRNALWVHCNLGSM 225 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 445567777777777788888888777788899999999999999999999876543
No 204
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=78.33 E-value=36 Score=27.84 Aligned_cols=75 Identities=13% Similarity=0.181 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 043025 243 LGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKL 317 (403)
Q Consensus 243 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl 317 (403)
+..-+..|-+..+.+........+.....|...+..|.....++.+.=.+-...-..+..+...|..++..|.+|
T Consensus 38 ~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L 112 (142)
T PF04048_consen 38 RAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQEAKSLLGCRREELKEL 112 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 444455666666666666666667777778888888888877777643333333345555555555555444444
No 205
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=77.69 E-value=49 Score=29.14 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 189 EYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGK 230 (403)
Q Consensus 189 ~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~ 230 (403)
++..+...+..+...+..+.+.-..+.....+++.++..||.
T Consensus 12 ~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~ 53 (216)
T cd07627 12 YLDSLESQLKQLYKSLELVSSQRKELASATEEFAETLEALSS 53 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666666666666666555554
No 206
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=76.85 E-value=55 Score=29.28 Aligned_cols=25 Identities=0% Similarity=0.197 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 353 MNEEIVRFQEQKTLDMGIAFHNFSK 377 (403)
Q Consensus 353 ~~~El~~f~~~r~~~l~~~l~~~a~ 377 (403)
+..++..+..+...-++.-+..|+.
T Consensus 203 i~~~lq~li~e~d~~l~~~~~~~~~ 227 (234)
T cd07652 203 AVKDLFDLILEIDAALRLQYQKYAL 227 (234)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 4455555555555555555555543
No 207
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=76.75 E-value=1.3e+02 Score=33.37 Aligned_cols=17 Identities=12% Similarity=0.034 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043025 193 LKHYIFELENHLAEAQK 209 (403)
Q Consensus 193 ~~~~i~~le~~l~~l~k 209 (403)
...+..+++.....+.+
T Consensus 1459 a~as~~q~~~s~~el~~ 1475 (1758)
T KOG0994|consen 1459 ANASRSQMEESNRELRN 1475 (1758)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334443333333
No 208
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=76.53 E-value=60 Score=29.49 Aligned_cols=62 Identities=3% Similarity=0.081 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 329 EIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQK-------TLDMGIAFHNFSKGQARLASSIADAW 390 (403)
Q Consensus 329 ~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r-------~~~l~~~l~~~a~~qi~~~~~~~~~W 390 (403)
..++++++...+......+...+.-...|..+.... ...+-+.|+++=+..|.+.++++...
T Consensus 162 k~~~eK~k~~~~~~~~~~e~aKn~Y~~~l~~~N~~q~~~Y~e~mp~vfd~lQ~lee~Ri~~l~e~l~~~ 230 (253)
T cd07676 162 KADVEKARQQAQIRHQMAEDSKAEYSSYLQKFNKEQHEHYYTHIPNIFQKIQEMEERRIGRVGESMKTY 230 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777776666655555455555554443 23333334555555554444444333
No 209
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=75.96 E-value=83 Score=30.87 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043025 355 EEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEACS 401 (403)
Q Consensus 355 ~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~~ 401 (403)
.++..|+......+...|.+..+.+-. .+++...|..+..+++.+.
T Consensus 335 ~~L~~~Y~~F~~aY~~LL~Ev~RRr~~-~~k~~~i~~~~~eeL~~l~ 380 (412)
T PF04108_consen 335 EQLCEFYEGFLSAYDSLLLEVERRRAV-RDKMKKIIREANEELDKLR 380 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 466666666677777777777766644 8888999999988887654
No 210
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=75.82 E-value=71 Score=29.99 Aligned_cols=53 Identities=11% Similarity=0.210 Sum_probs=39.0
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 319 LTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKG 378 (403)
Q Consensus 319 ~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~ 378 (403)
|....++++....|..+..++..+-...+.|+..+. +-|..+|..-|.++++.
T Consensus 125 g~~~~kidkTra~v~~L~tri~Vaiq~v~siS~~I~-------kLRDeEL~PQL~eLi~G 177 (312)
T PF04782_consen 125 GADSSKIDKTRASVKDLHTRIRVAIQSVDSISKRIE-------KLRDEELYPQLVELIQG 177 (312)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 677788998888999988888888777777766543 34566666666666665
No 211
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=75.64 E-value=56 Score=28.75 Aligned_cols=45 Identities=18% Similarity=0.277 Sum_probs=28.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKA 231 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~ 231 (403)
.+++..+..++..+...+..+.+...++.....+++.++..+|.+
T Consensus 10 ~~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~ 54 (211)
T cd07598 10 QERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADT 54 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 345566666677777776666666666666666666666665543
No 212
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=75.14 E-value=65 Score=29.22 Aligned_cols=35 Identities=9% Similarity=0.084 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 329 EIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQ 363 (403)
Q Consensus 329 ~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~ 363 (403)
+.+++++++.++.....++...+.-...|..+...
T Consensus 161 k~~~eK~k~~~~~~~q~~e~aKn~Y~~~L~~~N~~ 195 (252)
T cd07675 161 KSDVEKAKQQLNLRTHMADESKNEYAAQLQNFNGE 195 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566777777766666665555555556555433
No 213
>PLN02866 phospholipase D
Probab=74.96 E-value=8.6 Score=41.60 Aligned_cols=111 Identities=14% Similarity=0.222 Sum_probs=72.3
Q ss_pred EEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhc------------------------
Q 043025 27 SVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY------------------------ 82 (403)
Q Consensus 27 ~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~------------------------ 82 (403)
.|.|+.|..-. -..--..|+|+... +.-.|.+.+.-+.-.-||-.|.++-
T Consensus 17 ~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (1068)
T PLN02866 17 IVSVSRPDAGD-ISPVLLSYTIELQY-----KQFKWTLYKKASQVLYLHFALKKRAFIEELHEKQEQVKEWLQNLGIGDH 90 (1068)
T ss_pred EEEEecCCCCC-CCceEEEEEEEEEE-----eeeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 57777776432 22346789999875 3457899988888777776665321
Q ss_pred CC----------ccCCC----------CCCCcccc----ccCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 83 KG----------IFIPP----------LPEKSAVE----KFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 83 p~----------~~iP~----------lP~k~~~~----~~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
+. ..+|. .|....+. .....+.+...++.+||.||+.++.++.++++..+..||+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~yL~~~l~~~~~~n~~~~~~Flev 170 (1068)
T PLN02866 91 PAVVQDDDEPDDGTVPLHHDESAKNRDVPSSAALPVIRPALGRQQSISDRAKVAMQEYLNHFLGNLDIVNSREVCKFLEV 170 (1068)
T ss_pred ccccccccccccccccccchhhcccCCCcchhhcceeccccCCCccccHHHHHHHHHHHHHHhccchhcCCHhhhhheee
Confidence 00 01211 01111100 01234566666777799999999999999999999999998
Q ss_pred ChhhH
Q 043025 139 DEETM 143 (403)
Q Consensus 139 ~~~~~ 143 (403)
..-.|
T Consensus 171 S~lsf 175 (1068)
T PLN02866 171 SKLSF 175 (1068)
T ss_pred ceeee
Confidence 87665
No 214
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=73.64 E-value=1.2e+02 Score=31.44 Aligned_cols=23 Identities=4% Similarity=0.307 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043025 327 EAEIEYKELKAESEDSTRRFETI 349 (403)
Q Consensus 327 ~l~~~i~~~~~~~~~~~~~~~~i 349 (403)
+-+.+|.+.-.....++.+...+
T Consensus 502 KQk~eI~KIl~DTr~lQkeiN~l 524 (594)
T PF05667_consen 502 KQKEEIEKILSDTRELQKEINSL 524 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444333333333333333
No 215
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.49 E-value=1.1e+02 Score=30.89 Aligned_cols=10 Identities=20% Similarity=0.630 Sum_probs=5.4
Q ss_pred ccCCCCCCCc
Q 043025 85 IFIPPLPEKS 94 (403)
Q Consensus 85 ~~iP~lP~k~ 94 (403)
+++|.+|+--
T Consensus 323 ~~lpS~p~il 332 (741)
T KOG4460|consen 323 LCLPSVPNIL 332 (741)
T ss_pred EeecCCCCeE
Confidence 3566666543
No 216
>PRK11546 zraP zinc resistance protein; Provisional
Probab=73.42 E-value=27 Score=28.54 Aligned_cols=47 Identities=17% Similarity=0.272 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhHHHhc---ccCcchHHHHHHHHHHHHHHHHHHHHH
Q 043025 299 QQCELAETMKLKEINLDKLM---LTRSDKVGEAEIEYKELKAESEDSTRR 345 (403)
Q Consensus 299 ~~~~~~~~l~~k~~~l~kl~---~~~~~ki~~l~~~i~~~~~~~~~~~~~ 345 (403)
+...+.+++-.|+.+|+.|- ..++.||.++..||..+..++.+.+-.
T Consensus 62 ~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~ 111 (143)
T PRK11546 62 QTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVK 111 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666665 234567888888888888766655443
No 217
>PLN02939 transferase, transferring glycosyl groups
Probab=72.26 E-value=1.6e+02 Score=32.34 Aligned_cols=98 Identities=13% Similarity=0.165 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhcc--cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 296 AFRQQCELAETMKLKEINLDKLML--TRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFH 373 (403)
Q Consensus 296 ~~~~~~~~~~~l~~k~~~l~kl~~--~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~ 373 (403)
.+++.+.+.++.++.++.|+.... -+..+++.++ ++++.++..+..-...+..++.-+... ..+|.+.+.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 393 (977)
T PLN02939 322 VLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQ-------QKLKLLEERLQASDHEIHSYIQLYQES-IKEFQDTLS 393 (977)
T ss_pred HhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHH-------HHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 355667777777776666655331 1233444443 444444445555455566666666543 566777776
Q ss_pred HHHHHHHH------HHHHHHHHHHHHHHHhhhcc
Q 043025 374 NFSKGQAR------LASSIADAWRTLLPKLEACS 401 (403)
Q Consensus 374 ~~a~~qi~------~~~~~~~~We~~~~~~~~~~ 401 (403)
.....+-+ ....--+.|..++-.++++.
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~lll~id~~~ 427 (977)
T PLN02939 394 KLKEESKKRSLEHPADDMPSEFWSRILLLIDGWL 427 (977)
T ss_pred HHHhhhhcccccCchhhCCHHHHHHHHHHHHHHH
Confidence 66554433 33444568999998888764
No 218
>PRK11637 AmiB activator; Provisional
Probab=72.23 E-value=1e+02 Score=30.31 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 043025 293 RANAFRQQCELAETMKLKEINL 314 (403)
Q Consensus 293 R~~~~~~~~~~~~~l~~k~~~l 314 (403)
+...+.++......+..++..+
T Consensus 168 d~~~l~~l~~~~~~L~~~k~~l 189 (428)
T PRK11637 168 RQETIAELKQTREELAAQKAEL 189 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555554444433
No 219
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=72.11 E-value=77 Score=28.75 Aligned_cols=74 Identities=9% Similarity=0.130 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHhHHHhc-------ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 299 QQCELAETMKLKEINLDKLM-------LTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIA 371 (403)
Q Consensus 299 ~~~~~~~~l~~k~~~l~kl~-------~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~ 371 (403)
++..+...+.+.+..+.-|. ..+.=+|..+..+|+.+.... +++.+..+.....|+..+.......-..+
T Consensus 89 ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~q---qdEldel~e~~~~el~~l~~~~q~k~~~i 165 (258)
T PF15397_consen 89 QLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQ---QDELDELNEMRQMELASLSRKIQEKKEEI 165 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445445554444444433 111224455555555554433 23333344444444444444444443444
Q ss_pred HHHH
Q 043025 372 FHNF 375 (403)
Q Consensus 372 l~~~ 375 (403)
+.+.
T Consensus 166 l~~~ 169 (258)
T PF15397_consen 166 LSSA 169 (258)
T ss_pred HHHH
Confidence 3333
No 220
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=71.98 E-value=33 Score=32.70 Aligned_cols=44 Identities=27% Similarity=0.437 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 332 YKELKAESEDSTRRFETIVRL---MNEEIVRFQEQKTLDMGIAFHNFS 376 (403)
Q Consensus 332 i~~~~~~~~~~~~~~~~i~~~---~~~El~~f~~~r~~~l~~~l~~~a 376 (403)
...++.+++.++.+++..... +..|-.||... ..+|...+....
T Consensus 265 ~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~-~~~l~~~~~~l~ 311 (344)
T PF12777_consen 265 KQELEEEIEETERKLERAEKLISGLSGEKERWSEQ-IEELEEQLKNLV 311 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHH-HHHHHHHhcccH
Confidence 333444444444445444443 55787887754 455555544443
No 221
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=71.81 E-value=79 Score=28.74 Aligned_cols=54 Identities=9% Similarity=0.164 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 325 VGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKG 378 (403)
Q Consensus 325 i~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~ 378 (403)
+...++++...-..+...+..|..--..+...+..++..|..-|+.+|..|+..
T Consensus 184 ~~~~~~~Y~~~l~~~n~~~~~y~~~m~~~~~~~Q~lEe~Ri~~lk~~l~~y~~~ 237 (258)
T cd07655 184 VSKTKDKYEKALEDLNKYNPRYMEDMEQVFDKCQEFEEKRLDFFKEILLSYHRH 237 (258)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555666777667778888888889988899998888875
No 222
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=71.66 E-value=72 Score=28.23 Aligned_cols=117 Identities=9% Similarity=0.003 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhhhhHHHHHHHHHH-HHHHHHH
Q 043025 189 EYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGK--------AAKLLGACEGDALGKAFSELGM-KSEALSV 259 (403)
Q Consensus 189 ~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~--------~~~~l~~~e~~~L~~~~~~~~~-~~~~~~~ 259 (403)
++.+....++.+......+...-..+......++.++..||. .|..++.... .+.......++ -.-.+++
T Consensus 32 ~l~~l~~~Lk~~~~~~~~lv~~rkela~~~~~fs~al~~L~~~E~t~L~~~ls~lae~~e-k~~~l~~r~A~~d~l~L~e 110 (219)
T cd07621 32 FLVEYHNRIKDATAKADKMTRKHKDVADSYIKISAALTQLATSEPTPLDKFLLKVAETFE-KLRKLEGRVASDEDLKLSD 110 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH-HHHHHHHHHHHhhHhHHHH
Confidence 334455555555555555555555555555555555554443 3333433321 12222222211 1111122
Q ss_pred H---HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 260 K---LQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETM 307 (403)
Q Consensus 260 ~---~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l 307 (403)
. +.+.....-..|...++-+..|-.+-+.+-+.|. .-.++..++...
T Consensus 111 ~L~~Y~r~~~A~K~~l~rR~ral~~~q~A~k~L~KaR~-k~~~v~~AE~~~ 160 (219)
T cd07621 111 TLRYYMRDTQAAKDLLYRRLRCLANYENANKNLEKARA-KNKDVHAAEAAQ 160 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-chhhHHHHHHHH
Confidence 2 1222333334566667777888888777666664 234444444433
No 223
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=71.20 E-value=1.6e+02 Score=32.05 Aligned_cols=54 Identities=17% Similarity=0.221 Sum_probs=41.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 186 SNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE 239 (403)
Q Consensus 186 ~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e 239 (403)
....+..++.-+..++..|+.+.....+...-.+++...+.+++.....+...+
T Consensus 682 ~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e 735 (1174)
T KOG0933|consen 682 AQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNE 735 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 356777778888889999998888888777777788888888777776665554
No 224
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=70.88 E-value=56 Score=26.66 Aligned_cols=23 Identities=4% Similarity=0.228 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 043025 217 RHRELGESLSDFGKAAKLLGACE 239 (403)
Q Consensus 217 ~~~~l~~~~~~l~~~~~~l~~~e 239 (403)
+++++.+++..|+.....+..+.
T Consensus 63 h~q~Fn~sI~sy~~i~~~i~~sq 85 (142)
T PF04048_consen 63 HYQGFNSSIGSYSQILSSISESQ 85 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777776665554
No 225
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=70.54 E-value=72 Score=27.75 Aligned_cols=103 Identities=15% Similarity=0.088 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhhhhhHHHHHH--------H
Q 043025 189 EYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSD-----------FGKAAKLLGACEGDALGKAFS--------E 249 (403)
Q Consensus 189 ~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~-----------l~~~~~~l~~~e~~~L~~~~~--------~ 249 (403)
++......++.+...+..+.+.-..+.....+++.++.. ++..|..|++... .+..... .
T Consensus 12 yl~~l~~~lk~~~~~~~~lv~~rk~la~~~~~fs~al~~L~~~E~~~~~~l~~~l~~lse~~e-~i~~~~~~~a~~d~~~ 90 (198)
T cd07630 12 MNTKLSANMKEAAEKFLKIVNTEQRLANALGHLSSSLQLCVGLDEASVVALNRLCTKLSEALE-EAKENIEVVAGNNENT 90 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 445566666667777777777767777777666666653 3444444554431 1111111 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 250 LGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANA 296 (403)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~ 296 (403)
+|..+.... ......-.-|....+-+..|-.+-+.+-+.|...
T Consensus 91 Lg~~L~~Y~----r~i~a~K~~l~~R~~~~~~~~~a~k~l~Kar~~k 133 (198)
T cd07630 91 LGLTLDLYS----RYSESEKDMLFRRTCKLIEFENASKALEKAKPQK 133 (198)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 222222221 2223333445556666777777766655555443
No 226
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.15 E-value=1.7e+02 Score=31.40 Aligned_cols=41 Identities=20% Similarity=0.379 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhh
Q 043025 200 LENHLAEAQKHAYRLVKR-HRELGESLSDFGKAAKLLGACEG 240 (403)
Q Consensus 200 le~~l~~l~k~~~~l~k~-~~~l~~~~~~l~~~~~~l~~~e~ 240 (403)
+++.++......++++.+ .+++...+.-+|.+...+..|..
T Consensus 55 Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~re 96 (982)
T KOG3691|consen 55 LEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNCRE 96 (982)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666554 46677777777777777766653
No 227
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=68.44 E-value=82 Score=27.60 Aligned_cols=44 Identities=20% Similarity=0.287 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043025 195 HYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGAC 238 (403)
Q Consensus 195 ~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~ 238 (403)
+.+..+|..+..+.+.+++++|.-+.+.++..+++.+-..++..
T Consensus 2 ~~l~~~E~ele~l~~~ikkLiK~ck~~i~a~k~~~~a~~~F~~~ 45 (207)
T cd07602 2 ENLHEHEAELERTNKAIKELIKECKNLISATKNLSKAQRSFAQT 45 (207)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999999999999999999888888777766544
No 228
>PRK11020 hypothetical protein; Provisional
Probab=68.26 E-value=28 Score=26.90 Aligned_cols=48 Identities=17% Similarity=0.108 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhHHHhc-ccCcchHHHHHHHHHHHHHHHHHHHHH
Q 043025 298 RQQCELAETMKLKEINLDKLM-LTRSDKVGEAEIEYKELKAESEDSTRR 345 (403)
Q Consensus 298 ~~~~~~~~~l~~k~~~l~kl~-~~~~~ki~~l~~~i~~~~~~~~~~~~~ 345 (403)
++++.+.+.|+.-+.++..+. .++.+.+.++..+++.++.++..++..
T Consensus 5 ~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 53 (118)
T PRK11020 5 NEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEV 53 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555554443 345678888888888888888776554
No 229
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=66.86 E-value=1.6e+02 Score=30.32 Aligned_cols=51 Identities=18% Similarity=0.277 Sum_probs=27.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHh
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRL---V-KRHRELGESLSDFGKAAKLLGA 237 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l---~-k~~~~l~~~~~~l~~~~~~l~~ 237 (403)
...|.+.++.+..+...+..|......+ + .-...+-..+.++...+..|..
T Consensus 190 ~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~ 244 (569)
T PRK04778 190 SGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVE 244 (569)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3345666666777777666666655544 1 1223344555556555555543
No 230
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=66.38 E-value=99 Score=27.75 Aligned_cols=65 Identities=20% Similarity=0.222 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 294 ANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQE 362 (403)
Q Consensus 294 ~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~ 362 (403)
..+..+.+.+++....+...+..+. ++++.++.+|..+..++...+..+..+...+..++..-.+
T Consensus 92 ~aL~~E~~~ak~r~~~le~el~~l~----~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e 156 (239)
T COG1579 92 RALNIEIQIAKERINSLEDELAELM----EEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE 156 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555554443 4455555555556666666666666665555555555544
No 231
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=66.06 E-value=91 Score=27.19 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 195 HYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLL 235 (403)
Q Consensus 195 ~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l 235 (403)
..++.+|..+..+.....+++|.-+.+.++...+..+...+
T Consensus 2 ~~l~~~E~~~~~l~~~l~kl~K~~~~~~~ag~~~~~a~~~F 42 (200)
T cd07603 2 ASLEQVEADVSELETRLEKLLKLCNGMVDSGKTYVNANSLF 42 (200)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999999999988877776655555444443
No 232
>smart00030 CLb CLUSTERIN Beta chain.
Probab=65.45 E-value=90 Score=26.95 Aligned_cols=47 Identities=11% Similarity=0.181 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 353 MNEEIVRFQEQKTLDMGI---AFHNFSKGQARLASSIADAWRTLLPKLEA 399 (403)
Q Consensus 353 ~~~El~~f~~~r~~~l~~---~l~~~a~~qi~~~~~~~~~We~~~~~~~~ 399 (403)
++..|..-.+.++..++. +=..+.+.+-...+.+...|+.++|+++.
T Consensus 48 ll~tLe~~kk~KeeAlk~~~e~e~kL~E~~~vCnetm~alWeECKpCLk~ 97 (206)
T smart00030 48 LLSTLEEAKKKKEEALKDTRESEEKLKESQGVCNETMMALWEECKPCLKQ 97 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 334444444444444433 33445566666778889999999999874
No 233
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=64.58 E-value=1.1e+02 Score=27.57 Aligned_cols=52 Identities=8% Similarity=-0.057 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 327 EAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKG 378 (403)
Q Consensus 327 ~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~ 378 (403)
..+.++...-..++....+|..=-......+...+.+|..-|+.+|-.|+..
T Consensus 172 k~~~~Y~~~v~~l~~~~~~w~~~~~~~c~~fq~lEeeRi~f~k~~lw~~~n~ 223 (240)
T cd07672 172 DADRLYMQNISVLDKIREDWQKEHVKACEFFEKQECERINFFRNAVWTHVNQ 223 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3344455555555555555555444455666666899999999999888764
No 234
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=64.15 E-value=1e+02 Score=27.26 Aligned_cols=43 Identities=14% Similarity=0.195 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 188 PEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGK 230 (403)
Q Consensus 188 ~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~ 230 (403)
.++......++.+...+..+.+.-..+.....+++.++..||.
T Consensus 19 ~~i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~ 61 (224)
T cd07623 19 QQIENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLSN 61 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666666666666666666666666666666555554
No 235
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=61.95 E-value=1.1e+02 Score=26.95 Aligned_cols=28 Identities=14% Similarity=-0.117 Sum_probs=18.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 043025 267 QLLMNFEEPLKDYVRAVQSIKATIAERA 294 (403)
Q Consensus 267 ~~~~~~~e~l~~~~~~~~s~k~~l~~R~ 294 (403)
..-.-|.+.++-+..+..+-+.+-+.|.
T Consensus 120 A~K~ll~rR~ral~~~e~A~~~L~KaR~ 147 (218)
T cd07663 120 AAKDLLYRRARALADYENSNKALDKARL 147 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344566677777888877777666653
No 236
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=61.28 E-value=3.3e+02 Score=32.07 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVR 359 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~ 359 (403)
++..++.+|..++.++..+..++....+....++..
T Consensus 966 k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~ 1001 (1822)
T KOG4674|consen 966 KITSLEEELSELEKEIENLREELELSTKGKEDKLLD 1001 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHH
Confidence 333444444444444444444444443333333333
No 237
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=61.28 E-value=72 Score=24.43 Aligned_cols=70 Identities=21% Similarity=0.204 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 283 VQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLM 353 (403)
Q Consensus 283 ~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~ 353 (403)
++.+.++-..|..+..+++.+...-+..-.++.++.... ...+.+..+...+..++..++..+..+...+
T Consensus 28 vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~-~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l 97 (108)
T PF02403_consen 28 VDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG-EDAEELKAEVKELKEEIKELEEQLKELEEEL 97 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT-CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555556555554443333344443222 3344555555555555555555555544443
No 238
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=61.21 E-value=1.7e+02 Score=28.71 Aligned_cols=20 Identities=15% Similarity=0.451 Sum_probs=11.6
Q ss_pred CHHHHHHHHHHHHHHHHHHh
Q 043025 102 SAEFIEMRRQGLDLFVNRIA 121 (403)
Q Consensus 102 ~~~~i~~R~~~L~~fl~~~~ 121 (403)
+.+=|+.=+..|..++..+-
T Consensus 120 d~~~v~~L~~~l~~~i~~~~ 139 (412)
T PF04108_consen 120 DEDSVEILRENLKISIDELQ 139 (412)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 55556665566666665543
No 239
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=60.99 E-value=1.2e+02 Score=26.81 Aligned_cols=117 Identities=13% Similarity=0.013 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhhhhHHHHHHHHHH-HHHHHHH
Q 043025 189 EYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGK--------AAKLLGACEGDALGKAFSELGM-KSEALSV 259 (403)
Q Consensus 189 ~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~--------~~~~l~~~e~~~L~~~~~~~~~-~~~~~~~ 259 (403)
++.+....++++...+..+...-..+......++.++..+|. .|..+++.+. .+.+.....+. -.-.++.
T Consensus 31 ~l~~~~~~Lk~~~~~~e~l~~~rk~la~~~~~~s~sl~~L~~~e~t~L~~~l~~laev~e-ki~~l~~~~A~~e~l~L~e 109 (218)
T cd07662 31 FLLEYHNRVKDSSAKSDRMTRSHKSAADDYNRIGSSLYTLGTQDSTDICKFFLKVSELFD-KTRKIEARVAADEDLKLSD 109 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhHHH
Confidence 444555556666666556655555565655555555554444 3444444331 11111111110 0001111
Q ss_pred H---HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 260 K---LQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETM 307 (403)
Q Consensus 260 ~---~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l 307 (403)
. +.......-.-|...++-+..|-.|=+.+-+.|.. -.++..++...
T Consensus 110 ~L~~Y~r~~~A~Kdll~rR~r~l~~~enA~k~L~KaR~~-~kev~~aE~~~ 159 (218)
T cd07662 110 LLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAK-NKDVLQAETTQ 159 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CChHHHHHHHH
Confidence 1 11222233344555666677777777776666655 23444444333
No 240
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=60.02 E-value=1.4e+02 Score=27.25 Aligned_cols=53 Identities=11% Similarity=0.260 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 325 VGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSK 377 (403)
Q Consensus 325 i~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~ 377 (403)
++..+.++...-+.++.....|..--..+-.-+..++..|...|+.+|.++..
T Consensus 184 ~~~sk~~Y~~~l~~ln~~~~~y~~~m~~vfd~~Q~~Ee~Ri~flk~~l~~~~~ 236 (258)
T cd07680 184 VQKTQEKYEKVLDDVGKTTPQYMENMEQVFEQCQQFEEKRLVFLKEVLLDIKR 236 (258)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666666677777777777888889999999999999988764
No 241
>PRK14160 heat shock protein GrpE; Provisional
Probab=59.66 E-value=1.2e+02 Score=26.60 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMG 369 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~ 369 (403)
++..++.++..++..+..+..+|+.+.+.+..|.......-...|-
T Consensus 69 ~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~ 114 (211)
T PRK14160 69 ENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVL 114 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666777777777777777777777777766554444443
No 242
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=59.54 E-value=1.2e+02 Score=26.59 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=40.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGA 237 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~ 237 (403)
||. .-+..+|.+++..+..+......++.....+...+.+.-.....|..
T Consensus 23 DP~-~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~ 72 (221)
T PF04012_consen 23 DPE-KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEK 72 (221)
T ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 78899999999999999999988888888888887777776666643
No 243
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=59.17 E-value=2.2e+02 Score=29.28 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhcCccc
Q 043025 110 RQGLDLFVNRIASHPEL 126 (403)
Q Consensus 110 ~~~L~~fl~~~~~~~~l 126 (403)
-..|+.+...|...|+-
T Consensus 27 i~~Le~~k~~l~~~pv~ 43 (560)
T PF06160_consen 27 IDELEERKNELMNLPVA 43 (560)
T ss_pred HHHHHHHHHHHHcCCHH
Confidence 35788888888888863
No 244
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=57.99 E-value=3.3e+02 Score=31.01 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=8.9
Q ss_pred CcceEEEEEEEE
Q 043025 40 VQAYISYRVITK 51 (403)
Q Consensus 40 ~~~~~~y~i~~~ 51 (403)
.++|++|.+.-.
T Consensus 66 ~nSyIIYEY~R~ 77 (1201)
T PF12128_consen 66 SNSYIIYEYQRE 77 (1201)
T ss_pred CCceEEEeeecc
Confidence 368888888764
No 245
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=57.35 E-value=1.5e+02 Score=26.75 Aligned_cols=54 Identities=19% Similarity=0.116 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 325 VGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKG 378 (403)
Q Consensus 325 i~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~ 378 (403)
+...+.++...-..+.....+|..=-...-.-+..++..|..-|+.+|-.|+..
T Consensus 169 ~~~a~~~Y~~~v~~l~~~~~~w~~~~~~~~~~~Q~lEeeRi~f~K~~lw~~~n~ 222 (242)
T cd07671 169 ATEAERVYKQNIEQLDKARTEWETEHILTCEVFQLQEDDRITILRNALWVHCNH 222 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 444556666666667777788877777777888889999999999999888764
No 246
>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of mostly uncharacterized fungal proteins with similarity to Saccharomyces cerevisiae Snf1p-interacting protein 3 (SIP3). These proteins contain an N-terminal BAR domain followed by a Pleckstrin Homology (PH) domain. SIP3 interacts with SNF1 protein kinase and activates transcription when anchored to DNA. It may function in the SNF1 pathway. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=57.10 E-value=1.4e+02 Score=26.37 Aligned_cols=44 Identities=14% Similarity=0.165 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHH
Q 043025 245 KAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVR-AVQSIKA 288 (403)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~-~~~s~k~ 288 (403)
.++..+|+.+..+....-+++......+.+||..++. .+..+|+
T Consensus 63 ~al~~f~~~l~e~~~~ll~~~~~~~~~~~~pL~~f~k~~i~~~Ke 107 (214)
T cd07609 63 LALKRFGDGLKDFWGGVLSALKGNDSLILDPLRSFVKSDIRPYKE 107 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 4677788777777655555555445567777777654 4555555
No 247
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.02 E-value=2.2e+02 Score=28.69 Aligned_cols=191 Identities=11% Similarity=0.103 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHh
Q 043025 195 HYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKA--FS-ELGMKSEALSVKLQREAHQLLMN 271 (403)
Q Consensus 195 ~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~ 271 (403)
..+......+..+......+.+....+......++..+..++..-.. ++.. .. .++.....+..............
T Consensus 274 ~~f~e~~~~i~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~-l~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~ 352 (503)
T KOG2273|consen 274 KEFTEKKEKIDKLEQQLKKLSKQVQRLVKRRRELASNLAELGKALAQ-LSALEGETDELSEALSGLAKVIESLSKLLEKL 352 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555556666666666665555555666666666666555443211 1111 11 22222222222222211111111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHhcccCcchHHHH---------HHHHHHHHHHH
Q 043025 272 FEEPLKDYVRAVQSIKATIAERANAFRQQCELAETM---KLKEINLDKLMLTRSDKVGEA---------EIEYKELKAES 339 (403)
Q Consensus 272 ~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l---~~k~~~l~kl~~~~~~ki~~l---------~~~i~~~~~~~ 339 (403)
. ...++..+...+++.++........+......+ ......+...+ ..+..+ .+++...+.++
T Consensus 353 -~-~~~~~~~~~~~l~~~i~~~~~~k~~~~~r~~~~~~~~~~~~~~~~~~----e~~~~~~~~~~~~~~~~k~~~~~~e~ 426 (503)
T KOG2273|consen 353 -T-AEKDSKKLAEQLREYIRYLESVKSLFEQRSKALQKLQEAQRELSSKK----EQLSKLKKKNRSSFGFDKIDLAEKEI 426 (503)
T ss_pred -h-hhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHHHhhhhhhccchhHHHHHHH
Confidence 0 445666667777776655333333232222222 22222222221 112222 23446666667
Q ss_pred HHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 340 EDSTRRFETIVRLMN-EEIV--RFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 340 ~~~~~~~~~i~~~~~-~El~--~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~ 396 (403)
+....+...++..+. .++. .+. ..++.-+..|-..+..=.+.++..|.+..-.
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~e~~~f~~~~~~d~~~~~~~~~d~~i~ 482 (503)
T KOG2273|consen 427 EKLEEKVNELEELLALKELELDEIS----ERIRAELERFEESRRQDFKESLKKYADLHVE 482 (503)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766666654422 3333 443 4445557777777777777777777766543
No 248
>PRK14155 heat shock protein GrpE; Provisional
Probab=56.82 E-value=80 Score=27.72 Aligned_cols=49 Identities=12% Similarity=0.090 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAF 372 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l 372 (403)
+++.++.++.+++.....+..+|+.+.+.+..|.......-...|-..|
T Consensus 21 ~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~L 69 (208)
T PRK14155 21 EIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDL 69 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777788888888877777776655444443333
No 249
>PRK14161 heat shock protein GrpE; Provisional
Probab=56.57 E-value=1.1e+02 Score=26.22 Aligned_cols=50 Identities=10% Similarity=0.124 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 323 DKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAF 372 (403)
Q Consensus 323 ~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l 372 (403)
.+++.++.++.+++.....+..+|+.+.+.+..|.......-...|-..|
T Consensus 26 ~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~L 75 (178)
T PRK14161 26 PEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKEL 75 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777888888888877777776655444443333
No 250
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=56.37 E-value=1.5e+02 Score=26.63 Aligned_cols=37 Identities=14% Similarity=0.218 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 326 GEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQE 362 (403)
Q Consensus 326 ~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~ 362 (403)
+++++...+...+...+++++-.--........+|..
T Consensus 186 eK~k~k~~~~~~k~~~akNeYll~l~~aN~~~~~yy~ 222 (241)
T cd07656 186 EKRQAKYSEAKLKCTKARNEYLLNLAAANATIHKYFV 222 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666666655555555555543
No 251
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=55.09 E-value=1.4e+02 Score=25.95 Aligned_cols=44 Identities=20% Similarity=0.139 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043025 195 HYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGAC 238 (403)
Q Consensus 195 ~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~ 238 (403)
..++.+|.....|.....++++.-+.+..+..+++.+...++..
T Consensus 2 ~~i~~~E~d~~~Le~~l~Kl~K~~~~~~dag~~~~~a~~~F~~~ 45 (200)
T cd07638 2 AALEDVEGDVAELELKLDKLVKLCIGMIDAGKAFCQANKQFMNG 45 (200)
T ss_pred chHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45788899999999999999999888888877777666666544
No 252
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=54.30 E-value=2.2e+02 Score=27.86 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 189 EYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLG 236 (403)
Q Consensus 189 ~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~ 236 (403)
.+..+...+.+++..+..+.............+...+.++...++.+.
T Consensus 60 ~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 60 QRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444443
No 253
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=53.93 E-value=1.5e+02 Score=25.93 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043025 195 HYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGAC 238 (403)
Q Consensus 195 ~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~ 238 (403)
+.++.+|..|..+.+.+.+++|.-+.+.++..+++.+-..++.+
T Consensus 2 ~~~~~~e~~le~~~k~i~kLiK~c~~~i~a~k~~~~a~~~Fa~~ 45 (207)
T cd07635 2 ERIRAHEAELERTNRFIKELLKDGKNLIAATKSLSAAQRKFAHS 45 (207)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777788888888888888777777766665555433
No 254
>PRK11637 AmiB activator; Provisional
Probab=53.83 E-value=2.3e+02 Score=27.90 Aligned_cols=27 Identities=4% Similarity=-0.027 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIV 350 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~ 350 (403)
.+..++.++.+....+..++..-..+.
T Consensus 220 ~l~~L~~~~~~~~~~l~~l~~~~~~L~ 246 (428)
T PRK11637 220 TLTGLESSLQKDQQQLSELRANESRLR 246 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444554544444444444444433
No 255
>PRK14141 heat shock protein GrpE; Provisional
Probab=53.49 E-value=1e+02 Score=27.13 Aligned_cols=51 Identities=12% Similarity=0.118 Sum_probs=35.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 323 DKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFH 373 (403)
Q Consensus 323 ~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~ 373 (403)
++++.++.++.+++..+-.+..+|+.+.+.+..|.......-...|-..|.
T Consensus 38 ~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~~~dLL 88 (209)
T PRK14141 38 DPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYGIAGFARDML 88 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466777777777777777888888888888888877776554444443333
No 256
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=53.48 E-value=1.5e+02 Score=25.79 Aligned_cols=43 Identities=21% Similarity=0.180 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043025 195 HYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGA 237 (403)
Q Consensus 195 ~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~ 237 (403)
..+..+|..+..+.....+++|.-+.+.++..++..+-..++.
T Consensus 2 ~~i~~~E~~~~~le~~l~kl~K~~k~~~~agk~~~~a~~~F~~ 44 (200)
T cd07639 2 AAIEEVEAEVSELETRLEKLVKLGSGMLEGGRHYCAASRAFVD 44 (200)
T ss_pred chHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999999999988888887777766655543
No 257
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=53.05 E-value=3.7e+02 Score=30.08 Aligned_cols=14 Identities=14% Similarity=0.418 Sum_probs=8.8
Q ss_pred hhhhcccccChhhH
Q 043025 130 EDLKTFLQADEETM 143 (403)
Q Consensus 130 ~~~~~FL~~~~~~~ 143 (403)
..+++||+.++-+.
T Consensus 1478 ~~v~~Flt~~~adp 1491 (1758)
T KOG0994|consen 1478 QQVRDFLTQPDADP 1491 (1758)
T ss_pred HHHHHHhcCCCCCH
Confidence 45677887665443
No 258
>PRK14154 heat shock protein GrpE; Provisional
Probab=52.50 E-value=1.1e+02 Score=26.75 Aligned_cols=44 Identities=9% Similarity=0.129 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLD 367 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~ 367 (403)
+++.++.++.+++.....+..+|+.+.+.+..|.......-...
T Consensus 60 el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~ 103 (208)
T PRK14154 60 QLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQ 103 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555666666666666666666666655544433
No 259
>PF15642 Tox-ODYAM1: Toxin in Odyssella and Amoebophilus
Probab=52.45 E-value=1.8e+02 Score=26.36 Aligned_cols=28 Identities=7% Similarity=0.061 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 342 STRRFETIVRLMNEEIVRFQEQKTLDMG 369 (403)
Q Consensus 342 ~~~~~~~i~~~~~~El~~f~~~r~~~l~ 369 (403)
-+..++.+.+-...-+..|..++...|.
T Consensus 175 y~~alk~l~nPaq~AlEDFYdWKRSVFh 202 (385)
T PF15642_consen 175 YKAALKRLTNPAQAALEDFYDWKRSVFH 202 (385)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 3444555555567778888877754443
No 260
>PRK14140 heat shock protein GrpE; Provisional
Probab=51.79 E-value=1.3e+02 Score=25.95 Aligned_cols=45 Identities=20% Similarity=0.244 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDM 368 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l 368 (403)
++..++.++.+++..+..+..+|+.+.+....|.......-...|
T Consensus 45 ~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~ 89 (191)
T PRK14140 45 KIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSL 89 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666667777777777777666554443333
No 261
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=51.47 E-value=1.8e+02 Score=26.04 Aligned_cols=44 Identities=16% Similarity=0.265 Sum_probs=33.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGK 230 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~ 230 (403)
-.++......++.+...+..+.+.-..+.....+++.++..||.
T Consensus 28 k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~ 71 (234)
T cd07664 28 QQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGN 71 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45667788888888888888888777787777777777666655
No 262
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=51.20 E-value=2e+02 Score=26.36 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 356 EIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLP 395 (403)
Q Consensus 356 El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~ 395 (403)
=+...+..+...+...|..|++..+....-..+.+..++.
T Consensus 222 lld~ld~~~~~~l~~~l~~~~~~e~~~~~~~~~~~~~~~~ 261 (264)
T cd07654 222 IIKALDGELYDHLKDFLISLSHTELETAQVIQETFQRLLE 261 (264)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666777788888888888888888888887777654
No 263
>KOG4796 consensus RNA polymerase II elongation factor [Transcription]
Probab=50.92 E-value=85 Score=31.41 Aligned_cols=51 Identities=4% Similarity=0.078 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 344 RRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLL 394 (403)
Q Consensus 344 ~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~ 394 (403)
.+++.|-..|..|..+|.......=.+.=-+|+..-+.+.+..+.-|+.-.
T Consensus 547 ~ey~~i~~qI~qEYeki~~dp~y~eeK~RceYLhsKLaHIK~lI~efDk~~ 597 (604)
T KOG4796|consen 547 PEYKQIEKQILQEYEKIRKDPNYMEEKQRCEYLHSKLAHIKTLIGEFDKQQ 597 (604)
T ss_pred CcHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345666667777777776444333334444566666666666666666543
No 264
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=50.59 E-value=3.4e+02 Score=28.90 Aligned_cols=17 Identities=18% Similarity=0.036 Sum_probs=7.8
Q ss_pred ChHHHHHHHHHHHHHHH
Q 043025 187 NPEYEKLKHYIFELENH 203 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~ 203 (403)
.+.++-+.+.++.+.+.
T Consensus 535 ~E~l~lL~~a~~vlree 551 (717)
T PF10168_consen 535 QECLELLSQATKVLREE 551 (717)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444555545444
No 265
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=50.52 E-value=1.2e+02 Score=30.74 Aligned_cols=8 Identities=25% Similarity=0.385 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 043025 280 VRAVQSIK 287 (403)
Q Consensus 280 ~~~~~s~k 287 (403)
.+...++.
T Consensus 85 ~RI~~sVs 92 (907)
T KOG2264|consen 85 KRILASVS 92 (907)
T ss_pred HHHHHHHH
Confidence 33333333
No 266
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=50.11 E-value=1.7e+02 Score=25.29 Aligned_cols=18 Identities=11% Similarity=0.143 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 043025 222 GESLSDFGKAAKLLGACE 239 (403)
Q Consensus 222 ~~~~~~l~~~~~~l~~~e 239 (403)
--++..+...+..+...+
T Consensus 49 m~~f~~l~e~v~~l~idd 66 (190)
T PF05266_consen 49 MVTFANLAEKVKKLQIDD 66 (190)
T ss_pred HHHHHHHHHHHHHcccCC
Confidence 344555555555554433
No 267
>PRK14151 heat shock protein GrpE; Provisional
Probab=50.04 E-value=1.3e+02 Score=25.68 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDM 368 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l 368 (403)
++..++.++.+++...-.+..+|+.+.+....|.......-...|
T Consensus 28 ~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~ 72 (176)
T PRK14151 28 RVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKF 72 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777777777777777766655444333
No 268
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.80 E-value=2.7e+02 Score=27.53 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=28.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGK 230 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~ 230 (403)
...|.....--++|..-+++.......+......|+.++.++..
T Consensus 36 ~~~f~~~e~e~~kLqkd~k~y~~av~am~~a~~~l~e~l~eiy~ 79 (460)
T KOG3771|consen 36 ERNFNKQEAEGKRLQKDLKNYLDAVRAMLAASKKLAESLQEIYE 79 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44555566666667777777666666777777777777666544
No 269
>PRK14149 heat shock protein GrpE; Provisional
Probab=49.66 E-value=1.4e+02 Score=25.83 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=39.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 322 SDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFH 373 (403)
Q Consensus 322 ~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~ 373 (403)
.++++.++.++.+++...-.+..+|+.+.+.+..|.......-...|-..|.
T Consensus 42 ~~~~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~~~~~a~~~~~~~LL 93 (191)
T PRK14149 42 GEIKEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMALEYAYEKIALDLL 93 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568888899999999999999999999999888888776555444433333
No 270
>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Islet cell autoantigen 69-kDa (ICA69) is a diabetes-associated autoantigen that is highly expressed in brain and beta cells. It is involved in membrane trafficking at the Golgi complex in neurosecretory cells. It is coexpressed with Protein Interacting with C Kinase 1 (PICK1), also a the BAR domain containing protein, in many tissues at different developmental stages. In neurons, ICA69 colocalizes with PICK1 in cell bodies and dendrites but is absent in synapses where PICK1 is enriched. ICA69 contains an N-terminal BAR domain and a conserved C-terminal domain of unknown function. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. ICA69 associate
Probab=48.89 E-value=1.8e+02 Score=25.24 Aligned_cols=42 Identities=21% Similarity=0.270 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 191 EKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAA 232 (403)
Q Consensus 191 ~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~ 232 (403)
..++.....+-..+.........+....+.||..+.++|..-
T Consensus 12 rsvq~t~~~Llk~i~~yq~~l~~lsq~e~~LG~fl~e~~~~d 53 (204)
T cd07661 12 RSVQDTCLELLKIIDNYQERLCILSQEENVLGKFLKEQGKID 53 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 334444444444444444455555556666666666666443
No 271
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=48.87 E-value=2.3e+02 Score=26.40 Aligned_cols=48 Identities=13% Similarity=0.143 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 043025 205 AEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSV 259 (403)
Q Consensus 205 ~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~ 259 (403)
+.+.-.+++.+|..+....++..+-..+. +.+...+..+-++|+.+..
T Consensus 149 KKlg~nIEKSvKDLqRctvSL~RYr~~lk-------ee~d~S~k~ik~~F~~l~~ 196 (302)
T PF07139_consen 149 KKLGPNIEKSVKDLQRCTVSLTRYRVVLK-------EEMDSSIKKIKQTFAELQS 196 (302)
T ss_pred cccCccHHHHHHHHHHHHHHHHhhhhHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555444433322 2344555566555555543
No 272
>PRK14147 heat shock protein GrpE; Provisional
Probab=48.71 E-value=1.3e+02 Score=25.47 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMG 369 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~ 369 (403)
+++.++.++.+++.....+..+|+.+.+.+..|.......-...|-
T Consensus 26 ~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a~~~~~ 71 (172)
T PRK14147 26 EVESLRSEIALVKADALRERADLENQRKRIARDVEQARKFANEKLL 71 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666677777777777777776666554443333
No 273
>PRK14139 heat shock protein GrpE; Provisional
Probab=48.70 E-value=1.4e+02 Score=25.65 Aligned_cols=45 Identities=18% Similarity=0.213 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDM 368 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l 368 (403)
++..++.++.+++...-.+..+|+.+.+.+..|.......-...|
T Consensus 40 ~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~ 84 (185)
T PRK14139 40 ELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESF 84 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666667777777777666666654443333
No 274
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=48.27 E-value=1.3e+02 Score=23.56 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhHHHhc-ccCcchHHHHHHHHHHHHHHHHH
Q 043025 298 RQQCELAETMKLKEINLDKLM-LTRSDKVGEAEIEYKELKAESED 341 (403)
Q Consensus 298 ~~~~~~~~~l~~k~~~l~kl~-~~~~~ki~~l~~~i~~~~~~~~~ 341 (403)
..+...+.++...+..|.+.+ .++++||.+-+..|.+.+.+++.
T Consensus 70 ~ki~~~~~kV~ere~eL~eA~~~G~~~KI~K~~~KL~ea~~eL~~ 114 (115)
T PF06476_consen 70 QKIAEKQQKVAEREAELKEAQAKGDSDKIAKRQKKLAEAKAELKE 114 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Confidence 344445556666666666655 45668888888888887776654
No 275
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=48.20 E-value=2.1e+02 Score=25.89 Aligned_cols=64 Identities=16% Similarity=0.268 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 330 IEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLL 394 (403)
Q Consensus 330 ~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~ 394 (403)
.++++++.+++.+.++|......+...-..|. ......-..|+++=+..|.+.+.++....+.+
T Consensus 150 k~~eK~~~K~~ka~~~Y~~~v~~~~~~~~~~~-~~m~~~~~~~Q~lEe~Ri~~~k~~l~~y~~~~ 213 (261)
T cd07648 150 KEIEKAEAKLKKAQDEYKALVEKYNNIRADFE-TKMTDSCKRFQEIEESHLRQMKEFLASYAEVL 213 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666554444444444443 22344445556666666666666665555554
No 276
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=48.16 E-value=1.9e+02 Score=25.24 Aligned_cols=42 Identities=24% Similarity=0.227 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 195 HYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLG 236 (403)
Q Consensus 195 ~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~ 236 (403)
..+..+|..+..|....++++|.-+.+..+-..+..+...++
T Consensus 2 ~~~~~~E~~~~~le~~l~kl~K~~~~~~d~g~~~~~a~~~F~ 43 (200)
T cd07637 2 ATIDEVETDVVEIEAKLDKLVKLCSGMIEAGKAYATTNKLFV 43 (200)
T ss_pred chHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999988887777555555444443
No 277
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=47.89 E-value=4e+02 Score=28.93 Aligned_cols=39 Identities=21% Similarity=0.211 Sum_probs=23.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 043025 322 SDKVGEAEIEYKELKAESEDSTRRFET----IVRLMNEEIVRFQ 361 (403)
Q Consensus 322 ~~ki~~l~~~i~~~~~~~~~~~~~~~~----i~~~~~~El~~f~ 361 (403)
++|+..|+.+|.+++. ++++.+.+.. ....+++||....
T Consensus 461 EekVklLeetv~dlEa-lee~~EQL~Esn~ele~DLreEld~~~ 503 (1243)
T KOG0971|consen 461 EEKVKLLEETVGDLEA-LEEMNEQLQESNRELELDLREELDMAK 503 (1243)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788888888887764 3333333332 3334667777663
No 278
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=47.83 E-value=2.7e+02 Score=27.47 Aligned_cols=67 Identities=15% Similarity=0.080 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 287 KATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMN 354 (403)
Q Consensus 287 k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~ 354 (403)
..+-..|.++..+++.+..+.+..-.++.++...+ ...+.+..+..++.+++..++..+..+...+.
T Consensus 31 ~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~-~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 97 (425)
T PRK05431 31 LELDEERRELQTELEELQAERNALSKEIGQAKRKG-EDAEALIAEVKELKEEIKALEAELDELEAELE 97 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444555555444333322222221111 12334444555555555555555444444433
No 279
>PRK14157 heat shock protein GrpE; Provisional
Probab=47.66 E-value=1.3e+02 Score=26.77 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDM 368 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l 368 (403)
++..++.++.+++..+..+..+|+.+.+.+..|.......-...|
T Consensus 85 ~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~a~~~~ 129 (227)
T PRK14157 85 PLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQHGIIDV 129 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666677777777777777666655444333
No 280
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=46.96 E-value=72 Score=21.35 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043025 335 LKAESEDSTRRFETIVRLM 353 (403)
Q Consensus 335 ~~~~~~~~~~~~~~i~~~~ 353 (403)
++.+.+++++..+.+.+.+
T Consensus 19 vk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 19 VKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 281
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=46.29 E-value=2.3e+02 Score=25.84 Aligned_cols=13 Identities=15% Similarity=0.450 Sum_probs=7.5
Q ss_pred cCCccCCCCCCCc
Q 043025 82 YKGIFIPPLPEKS 94 (403)
Q Consensus 82 ~p~~~iP~lP~k~ 94 (403)
||.+.+||=|.+.
T Consensus 9 ~~~~~~~~~~~~~ 21 (269)
T PF05278_consen 9 FPEILLSPRSRPV 21 (269)
T ss_pred ehhhccCCccCCC
Confidence 5666666655443
No 282
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=46.29 E-value=2e+02 Score=24.98 Aligned_cols=47 Identities=9% Similarity=0.054 Sum_probs=28.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAK 233 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~ 233 (403)
-.+...+...+..++.....+.+.-..+.....++|..+..||.+=.
T Consensus 20 ~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~~E~ 66 (200)
T cd07624 20 NEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWSASET 66 (200)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 34445566666666666666666666666666666666666654433
No 283
>PRK10869 recombination and repair protein; Provisional
Probab=46.25 E-value=3.5e+02 Score=27.78 Aligned_cols=182 Identities=10% Similarity=0.077 Sum_probs=0.0
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 043025 182 PVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVK-RHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVK 260 (403)
Q Consensus 182 ~~~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k-~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~ 260 (403)
+....++....-...+...+.-...+......+.. ........+......+..++...+. +......+..+...+.+.
T Consensus 202 l~~gE~eeL~~e~~~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~l~~~~~~l~~~~~~d~~-~~~~~~~l~~~~~~l~~~ 280 (553)
T PRK10869 202 PQPGEFEQIDEEYKRLANSGQLLTTSQNALQLLADGEEVNILSQLYSAKQLLSELIGMDSK-LSGVLDMLEEALIQIQEA 280 (553)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHhhhCHh-HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHH
Q 043025 261 LQREAHQLLMNFEEP--LKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAE 338 (403)
Q Consensus 261 ~~~~~~~~~~~~~e~--l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~ 338 (403)
..........--.+| |...-.-+..++. |+++.. ..++.+....++.+.+++.+ ...++.++.++.++.++..+
T Consensus 281 ~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~-L~rKyg--~~~~~~~~~~~~l~~eL~~L-~~~e~~l~~Le~e~~~l~~~ 356 (553)
T PRK10869 281 SDELRHYLDRLDLDPNRLAELEQRLSKQIS-LARKHH--VSPEELPQHHQQLLEEQQQL-DDQEDDLETLALAVEKHHQQ 356 (553)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHH-HHHHhC--CCHHHHHHHHHHHHHHHHHh-hCCHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 339 SEDSTRRFETIVRLMNEEIVRFQEQKTLDM 368 (403)
Q Consensus 339 ~~~~~~~~~~i~~~~~~El~~f~~~r~~~l 368 (403)
+..+-..+...-+..-..+..--.....+|
T Consensus 357 l~~~A~~LS~~R~~aA~~l~~~v~~~L~~L 386 (553)
T PRK10869 357 ALETAQKLHQSRQRYAKELAQLITESMHEL 386 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 284
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=45.87 E-value=3.1e+02 Score=27.03 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 326 GEAEIEYKELKAESEDSTRRFETIV 350 (403)
Q Consensus 326 ~~l~~~i~~~~~~~~~~~~~~~~i~ 350 (403)
+++..++.++.+++..++.....+.
T Consensus 72 ~~l~~~~~~l~~~~~~~~~~~~~~~ 96 (418)
T TIGR00414 72 EEIKKELKELKEELTELSAALKALE 96 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443333
No 285
>PRK14158 heat shock protein GrpE; Provisional
Probab=45.79 E-value=1.7e+02 Score=25.37 Aligned_cols=37 Identities=11% Similarity=-0.014 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 328 AEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQK 364 (403)
Q Consensus 328 l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r 364 (403)
++.++.+++...-.+..+|+.+.+.+..|.......-
T Consensus 52 le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a 88 (194)
T PRK14158 52 KEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYG 88 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555555555555554433
No 286
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=44.74 E-value=2.5e+02 Score=25.63 Aligned_cols=54 Identities=9% Similarity=0.062 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSK 377 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~ 377 (403)
.+++.+.++.+.-..++....+|..--..+-.-...|+..|..-|+.+|.+|-.
T Consensus 183 ~~~k~~~~Y~~~v~~L~~~~~~w~e~m~~~~d~~Q~~EeeRi~flK~~L~~~~~ 236 (258)
T cd07681 183 EAEKAKEQYEKALEELNRYNPRYMEDMEQAFEICQEAERKRLCFFKEMLLDLHQ 236 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777777777788887777778888889999999999999988866
No 287
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=44.44 E-value=2.4e+02 Score=25.42 Aligned_cols=18 Identities=11% Similarity=0.139 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043025 377 KGQARLASSIADAWRTLL 394 (403)
Q Consensus 377 ~~qi~~~~~~~~~We~~~ 394 (403)
...+.-.++.-.+|+-+.
T Consensus 142 ~~dv~~~ek~r~vlea~~ 159 (251)
T PF11932_consen 142 DADVSLAEKFRRVLEAYQ 159 (251)
T ss_pred ccCCCHHHHHHHHHHHHH
Confidence 334444444444454443
No 288
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=44.33 E-value=2.8e+02 Score=26.17 Aligned_cols=39 Identities=26% Similarity=0.300 Sum_probs=21.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 323 DKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQ 361 (403)
Q Consensus 323 ~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~ 361 (403)
.+++.+..++.++..++..++...+.....-..|+.+..
T Consensus 244 ~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk 282 (325)
T PF08317_consen 244 EKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLK 282 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 345555566666666666666555544444455555554
No 289
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=44.23 E-value=2.3e+02 Score=25.17 Aligned_cols=193 Identities=15% Similarity=0.116 Sum_probs=95.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGES------LSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVK 260 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~------~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~ 260 (403)
.|-+.++-.--..|...+..+...+..+......++.. ..++|.++..++..-. .+.+.+..+...+
T Consensus 19 ~P~~~~li~~~~~Y~kal~a~~~a~~~~~dAl~kia~~A~~s~~sk~lG~~L~~i~~~~r-~ie~~l~~~~~~~------ 91 (223)
T cd07605 19 NPVLRNLIKAGKKYQKALQALSQAAKVFFDALAKIGELASQSRGSQELGEALKQIVDTHK-SIEASLEQVAKAF------ 91 (223)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHH------
Confidence 45566666666677777776666665555555444333 3467777766654331 1222222222111
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHH-hcccCcchHHHHHHHHHHHHHH
Q 043025 261 LQREAHQLLMNFEEPLKDYVRAVQSIK-ATIAERANAFRQQCELAETMKLKEINLDK-LMLTRSDKVGEAEIEYKELKAE 338 (403)
Q Consensus 261 ~~~~~~~~~~~~~e~l~~~~~~~~s~k-~~l~~R~~~~~~~~~~~~~l~~k~~~l~k-l~~~~~~ki~~l~~~i~~~~~~ 338 (403)
...++..+...+.....++..+. +--+++..+...++.+..++.+.+.+-.+ -.+..+.+...+-.++.....+
T Consensus 92 ----~~~li~pLe~k~e~d~k~i~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KKs~~~~~~k~~~~l~~~~e~v~~k~~e 167 (223)
T cd07605 92 ----HGELILPLEKKLELDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQKSGTGKYQEKLDQALEELNDKQKE 167 (223)
T ss_pred ----HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccHHHHHHHHHHHHHHHH
Confidence 11222233333444433333332 33334444455566666555554444332 2355566666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 043025 339 SEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFH---NFSKGQARLASSIADAWRTL 393 (403)
Q Consensus 339 ~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~---~~a~~qi~~~~~~~~~We~~ 393 (403)
++.....- ....+..|-.||=- -...+...+. .|-..........+..|...
T Consensus 168 le~~~~~~--lr~al~EERrRyc~-lv~~~c~v~~~e~~~~~~~~~~L~~~l~~w~~~ 222 (223)
T cd07605 168 LEAFVSQG--LRDALLEERRRYCF-LVDKHCSVAKHEIAYHAKAMTLLSTRLPLWQEL 222 (223)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhc
Confidence 55544332 23335555555542 2333344433 34445567777788888753
No 290
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=44.13 E-value=2.1e+02 Score=24.64 Aligned_cols=57 Identities=21% Similarity=0.197 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 291 AERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFE 347 (403)
Q Consensus 291 ~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~ 347 (403)
..|...+..+..+...+...+.+++++...++++++.++.++..+..+++.-.+...
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~ 159 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANRWTDNIF 159 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 678889999999999999999999988888888888877777776666554444433
No 291
>PRK14163 heat shock protein GrpE; Provisional
Probab=43.83 E-value=2.3e+02 Score=25.00 Aligned_cols=51 Identities=10% Similarity=0.137 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHN 374 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~ 374 (403)
++..++.++.+++..+..+..+|+.+.+.+..|.......-...|-..|..
T Consensus 48 ~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLp 98 (214)
T PRK14163 48 QLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLP 98 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555666666666667777777777777777776665544444444433
No 292
>PRK14153 heat shock protein GrpE; Provisional
Probab=43.82 E-value=1.9e+02 Score=25.08 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=29.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 323 DKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDM 368 (403)
Q Consensus 323 ~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l 368 (403)
.+++.++.++.+++.....+..+|+.+.+.+..|.......-...|
T Consensus 40 ~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~a~~~~ 85 (194)
T PRK14153 40 SETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKFVLEQV 85 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666677777777777777777777777776666554433333
No 293
>PLN02678 seryl-tRNA synthetase
Probab=43.80 E-value=3.2e+02 Score=27.22 Aligned_cols=68 Identities=18% Similarity=0.147 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 286 IKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMN 354 (403)
Q Consensus 286 ~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~ 354 (403)
+..+-..|...+.+++.+..+.+..-.++.++.... +..+.+..++.++.+++..++.++..+...+.
T Consensus 35 il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~-~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~ 102 (448)
T PLN02678 35 VIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAK-EDATELIAETKELKKEITEKEAEVQEAKAALD 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555555444333222222222112 22334444445555555555554444444433
No 294
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=43.59 E-value=5.5e+02 Score=29.31 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=20.6
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHH
Q 043025 319 LTRSDKVGEAEIEYKELKAESEDSTRR 345 (403)
Q Consensus 319 ~~~~~ki~~l~~~i~~~~~~~~~~~~~ 345 (403)
|.++..+..++.+|.+++.+++.++..
T Consensus 767 GvD~~~I~~l~~~i~~L~~~l~~ie~~ 793 (1201)
T PF12128_consen 767 GVDPERIQQLKQEIEQLEKELKRIEER 793 (1201)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 778888888888888888877665443
No 295
>PRK14144 heat shock protein GrpE; Provisional
Probab=43.49 E-value=1.8e+02 Score=25.28 Aligned_cols=48 Identities=19% Similarity=0.122 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIA 371 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~ 371 (403)
+++.++.++.+++..+-.+..+|+.+.+.+..|.......-...|-..
T Consensus 53 ~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~ 100 (199)
T PRK14144 53 QLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKYGVEKLISA 100 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666777777777777777666655444444333
No 296
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=43.47 E-value=2.8e+02 Score=25.98 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=30.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 321 RSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAF 372 (403)
Q Consensus 321 ~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l 372 (403)
..|++--|+.+|.++++++..++.+++.+.+.+ .|-+++..-|...|
T Consensus 173 ~~D~v~LLqkk~~~l~~~l~~~~~eL~~~~k~L-----~faqekn~LlqslL 219 (323)
T PF08537_consen 173 NSDRVILLQKKIDELEERLNDLEKELEITKKDL-----KFAQEKNALLQSLL 219 (323)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 357788888888888888888888777654444 34445544444333
No 297
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.27 E-value=4.6e+02 Score=28.33 Aligned_cols=70 Identities=17% Similarity=0.279 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 217 RHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANA 296 (403)
Q Consensus 217 ~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~ 296 (403)
....|-++|.+||..++.+...-.+.+.+++..+|+....+... .+.++.....+.++|+.|..|..-
T Consensus 51 ek~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~------------rerI~~vK~~L~~~k~ll~~~rde 118 (982)
T KOG3691|consen 51 EKERLEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNC------------RERIHNVKNNLEACKELLNTRRDE 118 (982)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHhcCHHH
Confidence 34556677999999999998776677888888888777666443 344555556666777777665554
Q ss_pred HH
Q 043025 297 FR 298 (403)
Q Consensus 297 ~~ 298 (403)
++
T Consensus 119 Lq 120 (982)
T KOG3691|consen 119 LQ 120 (982)
T ss_pred HH
Confidence 44
No 298
>PRK14148 heat shock protein GrpE; Provisional
Probab=43.11 E-value=1.9e+02 Score=25.10 Aligned_cols=43 Identities=14% Similarity=0.164 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTL 366 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~ 366 (403)
++..++.++.+++...-.+..+|+.+.+.+..|.......-..
T Consensus 48 ~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~ 90 (195)
T PRK14148 48 TIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIE 90 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555556666666666666666666655544333
No 299
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=43.06 E-value=3.9e+02 Score=27.49 Aligned_cols=117 Identities=17% Similarity=0.186 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------hhhHHHHHHHHHHHHHHHH
Q 043025 189 EYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE----------GDALGKAFSELGMKSEALS 258 (403)
Q Consensus 189 ~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e----------~~~L~~~~~~~~~~~~~~~ 258 (403)
.+..+.+.++..+..+..+......++.....-...+..+...+..+-..- .+.|...+..+..-|....
T Consensus 106 ~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~ 185 (569)
T PRK04778 106 EINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFV 185 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHH
Confidence 334455555556666666666666666655444444444444444443211 1233333444333333332
Q ss_pred HHH----HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 043025 259 VKL----QREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAF-RQQCELAE 305 (403)
Q Consensus 259 ~~~----~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~-~~~~~~~~ 305 (403)
... -..+......+.+.+.....++..+..++..-..-+ .++..+..
T Consensus 186 ~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~ 237 (569)
T PRK04778 186 ELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKA 237 (569)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 222 234455556666666666666767666665554433 34444443
No 300
>PRK14143 heat shock protein GrpE; Provisional
Probab=43.05 E-value=1.8e+02 Score=26.08 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 335 LKAESEDSTRRFETIVRLMNEEIVRFQ 361 (403)
Q Consensus 335 ~~~~~~~~~~~~~~i~~~~~~El~~f~ 361 (403)
++...-.+..+|+.+.+.+..|.....
T Consensus 86 lkd~~lR~~AdfeN~RKR~~kE~e~~~ 112 (238)
T PRK14143 86 LNSQYMRIAADFDNFRKRTSREQEDLR 112 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444443
No 301
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.93 E-value=3e+02 Score=26.05 Aligned_cols=22 Identities=5% Similarity=0.137 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043025 275 PLKDYVRAVQSIKATIAERANA 296 (403)
Q Consensus 275 ~l~~~~~~~~s~k~~l~~R~~~ 296 (403)
...+-+.-..+.++.|++|+.-
T Consensus 222 r~eeeme~~~aeq~slkRt~Ee 243 (365)
T KOG2391|consen 222 RREEEMERLQAEQESLKRTEEE 243 (365)
T ss_pred HHHHHHHHHHHHHHHHHhhHHH
Confidence 3344444445555556565543
No 302
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=42.66 E-value=2.5e+02 Score=25.10 Aligned_cols=30 Identities=20% Similarity=0.352 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 200 LENHLAEAQKHAYRLVKRHRELGESLSDFG 229 (403)
Q Consensus 200 le~~l~~l~k~~~~l~k~~~~l~~~~~~l~ 229 (403)
+...+..+.+.-..+.....++|..+..||
T Consensus 37 l~~~~~~lvk~rr~La~~~~dfg~~l~~Ls 66 (230)
T cd07625 37 LQEKLLRVSKARKQLSLEEADFGQKLIQLS 66 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444443
No 303
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=42.44 E-value=2.2e+02 Score=24.65 Aligned_cols=46 Identities=17% Similarity=0.228 Sum_probs=29.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 323 DKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDM 368 (403)
Q Consensus 323 ~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l 368 (403)
+++..|+.++.+++.....+..+++.+.+....|.....+.....|
T Consensus 43 ~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~k~a~e~~ 88 (193)
T COG0576 43 QEIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAKKYAIEKF 88 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677766666667777777777777666666654444333
No 304
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=42.18 E-value=2.6e+02 Score=25.10 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 325 VGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFS 376 (403)
Q Consensus 325 i~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a 376 (403)
+.+.+.++...-..++.+..+++.--..+..-+..++..|..-|+.+|..|.
T Consensus 187 ~~k~e~~y~~~~~~l~~~~~~~~~~~~~~~~~~Q~~E~~rl~~~k~~l~~y~ 238 (239)
T cd07658 187 RLKAENEYYTCCVRLERLRLEWESALRKGLNQYESLEEERLQHLKHSLSQYL 238 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445567777777778888888888888888999999999999999988774
No 305
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=41.72 E-value=3.1e+02 Score=25.89 Aligned_cols=10 Identities=20% Similarity=0.278 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 043025 219 RELGESLSDF 228 (403)
Q Consensus 219 ~~l~~~~~~l 228 (403)
..|-.+...+
T Consensus 159 ~~L~~D~~~L 168 (325)
T PF08317_consen 159 ELLQEDYAKL 168 (325)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 306
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=41.43 E-value=4.5e+02 Score=27.75 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 043025 218 HRELGESLSDFGKAAKLLGACE 239 (403)
Q Consensus 218 ~~~l~~~~~~l~~~~~~l~~~e 239 (403)
...++..+.+|..+++.++...
T Consensus 102 ~~gls~~L~~Ff~alq~la~~P 123 (676)
T PRK05683 102 TTGISPALQRFFTALQTAAANP 123 (676)
T ss_pred CccHHHHHHHHHHHHHHHHHCC
Confidence 3567888888888888887643
No 307
>PRK14156 heat shock protein GrpE; Provisional
Probab=41.34 E-value=2.2e+02 Score=24.33 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=27.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 323 DKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLD 367 (403)
Q Consensus 323 ~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~ 367 (403)
.+++.++.++.+++...-.+..+|+.+.+.+..|.......-...
T Consensus 34 ~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~ 78 (177)
T PRK14156 34 SELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQD 78 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666777777666666666554443333
No 308
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=41.20 E-value=4.3e+02 Score=27.41 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 193 LKHYIFELENHLAEAQKHAYRLVKR 217 (403)
Q Consensus 193 ~~~~i~~le~~l~~l~k~~~~l~k~ 217 (403)
...-+..+...+..+......+...
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~ 350 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAE 350 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433333333
No 309
>PHA02562 46 endonuclease subunit; Provisional
Probab=40.96 E-value=4.1e+02 Score=27.06 Aligned_cols=15 Identities=13% Similarity=0.204 Sum_probs=7.7
Q ss_pred hhhhcccccChhhHH
Q 043025 130 EDLKTFLQADEETME 144 (403)
Q Consensus 130 ~~~~~FL~~~~~~~~ 144 (403)
..|..|+..++..|.
T Consensus 139 ~~f~~f~~~~~~er~ 153 (562)
T PHA02562 139 AGYVPFMQLSAPARR 153 (562)
T ss_pred CchhhHhcCChHhHH
Confidence 344566665554443
No 310
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=40.79 E-value=4.1e+02 Score=27.08 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=6.5
Q ss_pred HHHhhhHHHHHHHH
Q 043025 268 LLMNFEEPLKDYVR 281 (403)
Q Consensus 268 ~~~~~~e~l~~~~~ 281 (403)
....+.+.+.+|..
T Consensus 114 ei~kl~~e~~elr~ 127 (546)
T KOG0977|consen 114 EITKLREELKELRK 127 (546)
T ss_pred HHHHhHHHHHHHHH
Confidence 33444455555543
No 311
>PRK14164 heat shock protein GrpE; Provisional
Probab=40.53 E-value=2.3e+02 Score=25.05 Aligned_cols=50 Identities=12% Similarity=0.138 Sum_probs=31.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 323 DKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAF 372 (403)
Q Consensus 323 ~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l 372 (403)
..+..++.++.+++..+..+..+|+.+.+.+.+|.......-...|-..|
T Consensus 77 ~~~~~le~el~el~d~llR~~AE~eN~RkR~~rE~e~~~~~a~~~~~~~L 126 (218)
T PRK14164 77 GEASTVEAQLAERTEDLQRVTAEYANYRRRTERERQAIIETAKAGVATDL 126 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777777777777777777666554444443333
No 312
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=40.00 E-value=2.2e+02 Score=23.75 Aligned_cols=29 Identities=17% Similarity=0.326 Sum_probs=15.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 323 DKVGEAEIEYKELKAESEDSTRRFETIVR 351 (403)
Q Consensus 323 ~ki~~l~~~i~~~~~~~~~~~~~~~~i~~ 351 (403)
.+++.|+.++..+.......+++|..+-.
T Consensus 118 ~~~e~Le~e~~~L~~~~~~~~eDY~~L~~ 146 (161)
T TIGR02894 118 KRNEELEKELEKLRQRLSTIEEDYQTLID 146 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555433
No 313
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=39.73 E-value=5.5e+02 Score=28.23 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=14.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 323 DKVGEAEIEYKELKAESEDSTRRFETIVRLM 353 (403)
Q Consensus 323 ~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~ 353 (403)
++.+.++.++.++..++..+...+..+...+
T Consensus 276 ~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~ 306 (1072)
T KOG0979|consen 276 DKKEELESEKKETRSKISQKQRELNEALAKV 306 (1072)
T ss_pred hhhhhHHhHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 314
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=39.65 E-value=2.3e+02 Score=23.76 Aligned_cols=45 Identities=27% Similarity=0.281 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhHHHhcccC-----cchHHHHHHHHHHHHHHHHHHHH
Q 043025 300 QCELAETMKLKEINLDKLMLTR-----SDKVGEAEIEYKELKAESEDSTR 344 (403)
Q Consensus 300 ~~~~~~~l~~k~~~l~kl~~~~-----~~ki~~l~~~i~~~~~~~~~~~~ 344 (403)
+..+.......+..+..|.... ...+..++.++..++..++.++.
T Consensus 88 l~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 88 LAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333444444455544332 12344444444444444444443
No 315
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=39.57 E-value=3.5e+02 Score=25.98 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=10.2
Q ss_pred eccchHHHHHHHHHhhc
Q 043025 66 RRYSDFVWLRDRLFEKY 82 (403)
Q Consensus 66 RRysdF~~L~~~L~~~~ 82 (403)
=+|--|..|-..|....
T Consensus 40 eQF~~F~~L~~WL~~~~ 56 (359)
T PF10498_consen 40 EQFYYFTSLCAWLISKA 56 (359)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 35566666666666544
No 316
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=39.50 E-value=6.2e+02 Score=28.76 Aligned_cols=16 Identities=6% Similarity=0.009 Sum_probs=7.4
Q ss_pred HHHHHHHhcCccccCC
Q 043025 114 DLFVNRIASHPELQQS 129 (403)
Q Consensus 114 ~~fl~~~~~~~~l~~~ 129 (403)
+.=+..++.+-.+..+
T Consensus 606 ~~~~~~~l~~t~Iv~~ 621 (1163)
T COG1196 606 EPAVRFVLGDTLVVDD 621 (1163)
T ss_pred HHHHHHHhCCeEEecC
Confidence 3334445555544443
No 317
>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is
Probab=39.44 E-value=2.6e+02 Score=24.42 Aligned_cols=48 Identities=17% Similarity=0.210 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 188 PEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLL 235 (403)
Q Consensus 188 ~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l 235 (403)
+.|.........+-.....+.+....++..++.+|..+.++|..=..+
T Consensus 9 e~l~~~~~~y~~Ll~~~~~~~~~~~~l~q~q~~lG~~f~~l~~~~~~~ 56 (203)
T cd00011 9 ELLRETKRKYESVLQLGRALTAHLYSLSQTQHALGDAFADLSQKDPEL 56 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence 355666666677777777777888888888888888888887543333
No 318
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=39.18 E-value=4.3e+02 Score=26.81 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=24.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 323 DKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQ 361 (403)
Q Consensus 323 ~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~ 361 (403)
.|...+..++.+++-+++.+..+.....+.+..+|.+-.
T Consensus 460 ~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~~ISk~y 498 (507)
T PF05600_consen 460 EKRQEAQEEQQELEPKLDALVERTRELQKQIEADISKRY 498 (507)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455566666666766666666666666666666665443
No 319
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=38.99 E-value=2.2e+02 Score=23.40 Aligned_cols=11 Identities=18% Similarity=0.540 Sum_probs=5.9
Q ss_pred HHHHHHHHHHH
Q 043025 191 EKLKHYIFELE 201 (403)
Q Consensus 191 ~~~~~~i~~le 201 (403)
.+++-+++.++
T Consensus 21 gEI~~FvkEFE 31 (145)
T PF14942_consen 21 GEIRYFVKEFE 31 (145)
T ss_pred HHHHHHHHHHH
Confidence 34555555555
No 320
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=38.78 E-value=3.8e+02 Score=27.27 Aligned_cols=8 Identities=13% Similarity=-0.151 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 043025 326 GEAEIEYK 333 (403)
Q Consensus 326 ~~l~~~i~ 333 (403)
++++..|.
T Consensus 117 Eelk~~i~ 124 (907)
T KOG2264|consen 117 EELKRLIP 124 (907)
T ss_pred HHHHHHHH
Confidence 33333333
No 321
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=38.74 E-value=2.9e+02 Score=24.68 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 188 PEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGK 230 (403)
Q Consensus 188 ~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~ 230 (403)
+.|.........+......+......+...++.+|..+.++|.
T Consensus 40 e~l~~~~~~y~~L~~~~~~~~~~l~~l~q~q~~lg~~f~~~~~ 82 (229)
T PF06456_consen 40 ELLRDTQRTYRGLLKHARAYQNRLQALSQTQKELGDFFAELGV 82 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666666777777778888888888899999999888887
No 322
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=38.44 E-value=1.8e+02 Score=22.26 Aligned_cols=22 Identities=9% Similarity=0.105 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043025 365 TLDMGIAFHNFSKGQARLASSI 386 (403)
Q Consensus 365 ~~~l~~~l~~~a~~qi~~~~~~ 386 (403)
..+|+.+|.+|-..|-.|..++
T Consensus 95 ~~~f~~~m~~fq~~Q~~~~~~~ 116 (117)
T smart00503 95 RKKFKEVMNEFQRLQRKYRERE 116 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 5677888888888887776553
No 323
>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional
Probab=38.30 E-value=5e+02 Score=27.31 Aligned_cols=21 Identities=14% Similarity=0.165 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 043025 219 RELGESLSDFGKAAKLLGACE 239 (403)
Q Consensus 219 ~~l~~~~~~l~~~~~~l~~~e 239 (403)
..++..+.+|..+++.++...
T Consensus 103 ~gls~~l~~ff~a~q~la~~P 123 (649)
T PRK12715 103 SSISVPLQTFFDSIGQLNSTP 123 (649)
T ss_pred CcHHHHHHHHHHHHHHHHHCC
Confidence 457888888888888887643
No 324
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=38.15 E-value=2.8e+02 Score=24.30 Aligned_cols=29 Identities=10% Similarity=0.048 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043025 372 FHNFSKGQARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 372 l~~~a~~qi~~~~~~~~~We~~~~~~~~~ 400 (403)
..+|-.....|.++.+...+.+...++..
T Consensus 175 ~~d~k~~M~~yL~eQi~Fyq~v~~kle~a 203 (207)
T cd07669 175 ELDFKQMMQHYLRQQIIFYQRVSQQLEKT 203 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888889999999999888887753
No 325
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=37.96 E-value=1.8e+02 Score=26.78 Aligned_cols=22 Identities=9% Similarity=-0.037 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043025 289 TIAERANAFRQQCELAETMKLK 310 (403)
Q Consensus 289 ~l~~R~~~~~~~~~~~~~l~~k 310 (403)
+.++|.++-.+++++...++-.
T Consensus 239 AtRYRqKkRae~E~l~ge~~~L 260 (294)
T KOG4571|consen 239 ATRYRQKKRAEKEALLGELEGL 260 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777666666666555433
No 326
>PRK10884 SH3 domain-containing protein; Provisional
Probab=37.70 E-value=2.8e+02 Score=24.28 Aligned_cols=21 Identities=0% Similarity=0.036 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043025 329 EIEYKELKAESEDSTRRFETI 349 (403)
Q Consensus 329 ~~~i~~~~~~~~~~~~~~~~i 349 (403)
+.++..+..+++.++.+.+..
T Consensus 145 ~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 145 KNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 327
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=37.62 E-value=1.3e+02 Score=20.22 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 325 VGEAEIEYKELKAESEDSTRRFET 348 (403)
Q Consensus 325 i~~l~~~i~~~~~~~~~~~~~~~~ 348 (403)
+.++++++..++..+..++...+.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~ 25 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEE 25 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544444433
No 328
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=37.44 E-value=2e+02 Score=22.58 Aligned_cols=30 Identities=13% Similarity=0.328 Sum_probs=19.1
Q ss_pred HHHhcccCcchHHHHHHHHHHHHHHHHHHH
Q 043025 314 LDKLMLTRSDKVGEAEIEYKELKAESEDST 343 (403)
Q Consensus 314 l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~ 343 (403)
+.+|.-...+.+..|+..|.+++..++.+.
T Consensus 87 L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 87 LNRLNIPSREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 455544455667777777777777766554
No 329
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=37.37 E-value=3.1e+02 Score=24.61 Aligned_cols=100 Identities=16% Similarity=0.109 Sum_probs=57.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHhhhhhhHHHHHH--------H
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGK---------AAKLLGACEGDALGKAFS--------E 249 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~---------~~~~l~~~e~~~L~~~~~--------~ 249 (403)
-.++......++.+...+..+.+.-..+.....+++.++..||. +|..|+..+. .+..... .
T Consensus 28 ~~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~~~Ls~als~laev~~-~i~~~~~~qa~qd~~~ 106 (234)
T cd07665 28 LQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTALSRALSQLAEVEE-KIEQLHQEQANNDFFL 106 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 44667788888888888888888878888877777777666654 4555554431 1111111 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 043025 250 LGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIA 291 (403)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~ 291 (403)
||..++.. .+.....-..|....+-+..+..+-.++-+
T Consensus 107 f~e~l~eY----iRli~SVK~~f~~R~k~~~~~~~~~~~l~k 144 (234)
T cd07665 107 LAELLADY----IRLLSAVRGAFDQRMKTWQRWQDAQAMLQK 144 (234)
T ss_pred HhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222221 222333445566666667777766666443
No 330
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=37.25 E-value=4.2e+02 Score=26.19 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 043025 377 KGQARLASSIADAWRTLLPKLE 398 (403)
Q Consensus 377 ~~qi~~~~~~~~~We~~~~~~~ 398 (403)
+.+-....-+...|+.|+|+++
T Consensus 69 e~e~~Cn~sm~~lWeECkpCL~ 90 (436)
T PF01093_consen 69 EEEEVCNESMMALWEECKPCLK 90 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445556666777777765
No 331
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=37.06 E-value=61 Score=22.16 Aligned_cols=26 Identities=8% Similarity=0.197 Sum_probs=16.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 322 SDKVGEAEIEYKELKAESEDSTRRFE 347 (403)
Q Consensus 322 ~~ki~~l~~~i~~~~~~~~~~~~~~~ 347 (403)
+.|++.+|.++++.+++.+.++.+..
T Consensus 31 EqRLa~LE~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 31 EQRLAALEQRLQAAEQRAQAAEARAK 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777776666665543
No 332
>PRK14159 heat shock protein GrpE; Provisional
Probab=36.66 E-value=2.7e+02 Score=23.74 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=36.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 321 RSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMG 369 (403)
Q Consensus 321 ~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~ 369 (403)
...+++.++.++.+++.....+..+|+.+.+.+..|.......-...|-
T Consensus 28 ~~~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~a~~~~~ 76 (176)
T PRK14159 28 EDVEQNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAMAYANESFA 76 (176)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888888888888888888888887777655444433
No 333
>PRK10698 phage shock protein PspA; Provisional
Probab=36.30 E-value=3.1e+02 Score=24.32 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043025 191 EKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGA 237 (403)
Q Consensus 191 ~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~ 237 (403)
.-+..++..++..+..+......++...+.+...+..+......|..
T Consensus 27 k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~ 73 (222)
T PRK10698 27 KLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQE 73 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999888888888888888888887777766644
No 334
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=36.09 E-value=1.4e+02 Score=20.15 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIV 350 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~ 350 (403)
|+.++..+|..+..++..++.+-.+.+
T Consensus 18 kvdqLs~dv~~lr~~v~~ak~EAaRAN 44 (56)
T PF04728_consen 18 KVDQLSSDVNALRADVQAAKEEAARAN 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433333
No 335
>PRK14145 heat shock protein GrpE; Provisional
Probab=35.92 E-value=2.9e+02 Score=23.97 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 326 GEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDM 368 (403)
Q Consensus 326 ~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l 368 (403)
..++.++.+++.....+..+|+.+.+.+..|.......-...|
T Consensus 55 ~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~ 97 (196)
T PRK14145 55 QQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQV 97 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555566666666666666655554444333
No 336
>PRK14146 heat shock protein GrpE; Provisional
Probab=35.79 E-value=2.8e+02 Score=24.51 Aligned_cols=44 Identities=18% Similarity=0.281 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 325 VGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDM 368 (403)
Q Consensus 325 i~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l 368 (403)
+..++.++.+++...-.+..+|+.+.+.+..|.......-...|
T Consensus 63 l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~ 106 (215)
T PRK14146 63 LDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSL 106 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666777777776666666654443333
No 337
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=35.52 E-value=6.6e+02 Score=27.90 Aligned_cols=38 Identities=16% Similarity=0.420 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHH---hcCccccC-ChhhhcccccChhh
Q 043025 105 FIEMRRQGLDLFVNRI---ASHPELQQ-SEDLKTFLQADEET 142 (403)
Q Consensus 105 ~i~~R~~~L~~fl~~~---~~~~~l~~-~~~~~~FL~~~~~~ 142 (403)
.|..|+..|..-+.+. ..+|...- -+.=+.||...++.
T Consensus 156 vVStKk~dl~~vv~~f~I~veNP~~~lsQD~aR~FL~~~~p~ 197 (1074)
T KOG0250|consen 156 VVSTKKEDLDTVVDHFNIQVENPMFVLSQDAARSFLANSNPK 197 (1074)
T ss_pred cccccHHHHHHHHHHhCcCCCCcchhhcHHHHHHHHhcCChH
Confidence 3445566665555544 36675544 35568999887765
No 338
>PRK14143 heat shock protein GrpE; Provisional
Probab=35.34 E-value=3.3e+02 Score=24.45 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 043025 324 KVGEAEIEYKELKAESEDSTRRF 346 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~ 346 (403)
.+..++.+|..++.++..++++|
T Consensus 68 ~~~~l~~el~~l~~e~~elkd~~ 90 (238)
T PRK14143 68 RLAQLEQELESLKQELEELNSQY 90 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555554
No 339
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=35.27 E-value=6e+02 Score=27.40 Aligned_cols=39 Identities=5% Similarity=0.078 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 337 AESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNF 375 (403)
Q Consensus 337 ~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~ 375 (403)
.+.+.++++.+.+-..+..|.......-..+...++.++
T Consensus 555 ~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~l 593 (782)
T PRK00409 555 EKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKEL 593 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444455444444444444444444
No 340
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=34.62 E-value=5.6e+02 Score=26.81 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 043025 218 HRELGESLSDFGKAAKLLGACE 239 (403)
Q Consensus 218 ~~~l~~~~~~l~~~~~~l~~~e 239 (403)
...++..+.+|..+++.++...
T Consensus 105 ~~gls~~L~~Ff~alq~la~~P 126 (626)
T PRK08871 105 SKKIPENLNEWFDAVKTLADSP 126 (626)
T ss_pred CCcHHHHHHHHHHHHHHHHhCC
Confidence 3567788888888888887643
No 341
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im
Probab=34.52 E-value=3.1e+02 Score=23.89 Aligned_cols=43 Identities=9% Similarity=0.244 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 189 EYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKA 231 (403)
Q Consensus 189 ~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~ 231 (403)
.|.........+-...+.+.+....+...++.+|..+.++|..
T Consensus 10 ~L~~~q~~Y~~ll~~~~~l~~~~~~l~qtq~~Lg~~f~~l~~k 52 (201)
T cd07660 10 VLRDTQRKYESVLRLARALASQFYQMLQTQKALGDAFADLSQK 52 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555666666667778888888889999999998888764
No 342
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=34.30 E-value=2e+02 Score=26.10 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 325 VGEAEIEYKELKAESEDSTRRFETIVRL 352 (403)
Q Consensus 325 i~~l~~~i~~~~~~~~~~~~~~~~i~~~ 352 (403)
+-+++++|.+.+.+++.++.....+...
T Consensus 164 ~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 164 LLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3355566666666666555555554444
No 343
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=34.25 E-value=2.7e+02 Score=23.05 Aligned_cols=54 Identities=17% Similarity=0.122 Sum_probs=36.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 322 SDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNF 375 (403)
Q Consensus 322 ~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~ 375 (403)
..++..++.++.+++..+..+..+++.+...+..|.......-...+-..|...
T Consensus 17 ~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v 70 (165)
T PF01025_consen 17 EEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPV 70 (165)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888888888888877777777766554444443333333
No 344
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=34.22 E-value=4.9e+02 Score=26.07 Aligned_cols=39 Identities=15% Similarity=0.253 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 043025 330 IEYKELKAESEDSTRRFETIVRLMNE-EIVRFQEQKTLDM 368 (403)
Q Consensus 330 ~~i~~~~~~~~~~~~~~~~i~~~~~~-El~~f~~~r~~~l 368 (403)
.++..+++.-+.+...|+.+...+.. --.+|.......+
T Consensus 99 ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l 138 (475)
T PRK10361 99 DKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSL 138 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555333 2344444444433
No 345
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=34.02 E-value=3.2e+02 Score=23.89 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 195 HYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE 239 (403)
Q Consensus 195 ~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e 239 (403)
+.++..|..|..+.+.+++++|.-+.+.++...++.+-..++.+-
T Consensus 2 ~~l~~hE~ele~~~~~IkkliK~~~~li~a~K~~s~A~r~Fa~~L 46 (207)
T cd07633 2 ERLKCYEQELERTNKFIKDVIKDGNALISAIKEYSSAVQKFSQTL 46 (207)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667888888999999999988888888777776666665443
No 346
>PRK14158 heat shock protein GrpE; Provisional
Probab=33.33 E-value=3.2e+02 Score=23.68 Aligned_cols=42 Identities=12% Similarity=0.233 Sum_probs=24.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 323 DKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDM 368 (403)
Q Consensus 323 ~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l 368 (403)
+.+..++.++..++.++..+++++-+ +..|+..|.++...+.
T Consensus 40 ~~~~~le~~l~~le~e~~el~d~~lR----~~AefeN~RkR~~kE~ 81 (194)
T PRK14158 40 DRIKELEEALAAKEAEAAANWDKYLR----ERADLENYRKRVQKEK 81 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 45666677777777777777666644 4455555554443333
No 347
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=32.95 E-value=2.4e+02 Score=23.19 Aligned_cols=35 Identities=14% Similarity=0.064 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 337 AESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIA 371 (403)
Q Consensus 337 ~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~ 371 (403)
..++.++.........-+.|+..+...-..||..+
T Consensus 18 ~~le~a~e~~~~~~elT~eEl~lv~~ylkRDl~~~ 52 (146)
T PF07295_consen 18 EALEKAKEYLVAAGELTREELALVSAYLKRDLEEF 52 (146)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444443333333333
No 348
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=32.67 E-value=6.6e+02 Score=27.06 Aligned_cols=33 Identities=6% Similarity=-0.014 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 343 TRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNF 375 (403)
Q Consensus 343 ~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~ 375 (403)
+++-+.+-..+..|.......-..+...++.++
T Consensus 556 ~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~l 588 (771)
T TIGR01069 556 KERERNKKLELEKEAQEALKALKKEVESIIREL 588 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444333333333333333333
No 349
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=32.46 E-value=3.4e+02 Score=23.65 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 372 FHNFSKGQARLASSIADAWRTLLPKLEA 399 (403)
Q Consensus 372 l~~~a~~qi~~~~~~~~~We~~~~~~~~ 399 (403)
..+|-...+.|.+..++..+.+...++.
T Consensus 167 v~Dfk~~m~~yLe~qI~fyqqI~~kl~~ 194 (199)
T cd07626 167 VRDFKSMMRNYLQQQIEFYQKIAAKLEE 194 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555555555544443
No 350
>PRK14148 heat shock protein GrpE; Provisional
Probab=32.42 E-value=3.4e+02 Score=23.59 Aligned_cols=41 Identities=15% Similarity=0.189 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDM 368 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l 368 (403)
.++.++.+|..++.+++.+++++-. +..|+..|.+....+.
T Consensus 41 e~~~l~~~l~~l~~e~~elkd~~lR----~~Ae~eN~rKR~~rE~ 81 (195)
T PRK14148 41 QLERAKDTIKELEDSCDQFKDEALR----AKAEMENIRKRAERDV 81 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 4566666677776666666666533 4455555554443333
No 351
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=32.34 E-value=4.9e+02 Score=25.43 Aligned_cols=15 Identities=20% Similarity=0.428 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 043025 106 IEMRRQGLDLFVNRI 120 (403)
Q Consensus 106 i~~R~~~L~~fl~~~ 120 (403)
|..=.+-|+.|=+++
T Consensus 64 i~~lqkkL~~y~~~l 78 (395)
T PF10267_consen 64 IAQLQKKLEQYHKRL 78 (395)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444443333
No 352
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=32.10 E-value=3.3e+02 Score=23.34 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIVRL 352 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~~~ 352 (403)
+....+.+|++++.+++.++.+.+.+.+.
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ 183 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQ 183 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666666665554433
No 353
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=32.07 E-value=4e+02 Score=24.40 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 043025 216 KRHRELGESLSDFGKAAKLLGA 237 (403)
Q Consensus 216 k~~~~l~~~~~~l~~~~~~l~~ 237 (403)
+..+.+++.+..-|..+-.+=.
T Consensus 120 k~~R~Laseit~~GA~LydlL~ 141 (267)
T PF10234_consen 120 KAARQLASEITQRGASLYDLLG 141 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3446677777777766655433
No 354
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=31.70 E-value=5.8e+02 Score=26.15 Aligned_cols=36 Identities=22% Similarity=0.141 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHH
Q 043025 224 SLSDFGKAAKLLGACE--GDALGKAFSELGMKSEALSV 259 (403)
Q Consensus 224 ~~~~l~~~~~~l~~~e--~~~L~~~~~~~~~~~~~~~~ 259 (403)
.+..++.+...+.... .+.+......++.+...+..
T Consensus 243 ~~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~e 280 (557)
T COG0497 243 ALSLLGRALEALEDLSEYDGKLSELAELLEEALYELEE 280 (557)
T ss_pred HHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHH
Confidence 4555666666665322 22344444444444444433
No 355
>PF00140 Sigma70_r1_2: Sigma-70 factor, region 1.2; InterPro: IPR009042 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. ; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1SMY_F 1IW7_P 1SIG_A 3IYD_F 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P 3DXJ_P ....
Probab=31.47 E-value=32 Score=20.80 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCccccCChhh
Q 043025 112 GLDLFVNRIASHPELQQSEDL 132 (403)
Q Consensus 112 ~L~~fl~~~~~~~~l~~~~~~ 132 (403)
.|..||+.|..+|.|...+.+
T Consensus 3 ~l~~Yl~ei~~~~LLt~eeE~ 23 (37)
T PF00140_consen 3 SLRLYLKEIGRYPLLTAEEEI 23 (37)
T ss_dssp HHHHHHHHHHHS-EETTHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHH
Confidence 478899999999998866554
No 356
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=31.46 E-value=3.4e+02 Score=23.33 Aligned_cols=42 Identities=12% Similarity=0.189 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043025 355 EEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKL 397 (403)
Q Consensus 355 ~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~ 397 (403)
.|..+|. .|+.++-..|..|-+.-.+|+.+.+..|++.....
T Consensus 125 ~e~~k~~-~Re~~iak~m~K~pq~~a~~~a~~~k~e~~a~a~~ 166 (225)
T KOG4848|consen 125 KEPEKFT-FREAEIAKNMKKYPQTLAKYEASLVKQEQEADAKE 166 (225)
T ss_pred hhHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHhHHHhhHHH
Confidence 5667776 68999999999999999999999999999876544
No 357
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=31.37 E-value=3.5e+02 Score=23.50 Aligned_cols=88 Identities=15% Similarity=0.129 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 282 AVQSIKATIAERANAFRQQCELAETMKLK-EINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRF 360 (403)
Q Consensus 282 ~~~s~k~~l~~R~~~~~~~~~~~~~l~~k-~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f 360 (403)
.+.++++.|..++.+-.+...+.+.+... ......+. ..+.+.++..++++...++.++..+ .+++.+
T Consensus 4 ~i~si~~~L~e~d~~REE~l~lsRei~r~s~~aI~~~H---~~~~eeA~~~l~~a~~~v~~Lk~~l--------~~~pel 72 (204)
T COG2178 4 EINSIREVLQEKDKAREEALKLSREIVRLSGEAIFLLH---RGDFEEAEKKLKKASEAVEKLKRLL--------AGFPEL 72 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHH--------hhhHHH
Confidence 35566666666666555555555444332 11122222 1235555555655555555444433 233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043025 361 QEQKTLDMGIAFHNFSKGQARL 382 (403)
Q Consensus 361 ~~~r~~~l~~~l~~~a~~qi~~ 382 (403)
. .......++++|++..+-|
T Consensus 73 ~--~ag~~~~a~QEyvEA~~l~ 92 (204)
T COG2178 73 Y--FAGFVTTALQEYVEATLLY 92 (204)
T ss_pred H--HHHhhcchHHHHHHHHHHH
Confidence 2 1245567777777766543
No 358
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=31.32 E-value=1.5e+02 Score=20.90 Aligned_cols=12 Identities=50% Similarity=0.479 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 043025 331 EYKELKAESEDS 342 (403)
Q Consensus 331 ~i~~~~~~~~~~ 342 (403)
+..+++.+++.+
T Consensus 39 e~~~L~~ei~~l 50 (80)
T PF04977_consen 39 ENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHh
Confidence 333333333333
No 359
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=30.67 E-value=3.3e+02 Score=23.03 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 272 FEEPLKDYVRAVQSIKATIAERANAFR 298 (403)
Q Consensus 272 ~~e~l~~~~~~~~s~k~~l~~R~~~~~ 298 (403)
+.+.|..|..|-..+.+++.+|...+.
T Consensus 107 Lyq~L~~hqe~erRL~~mi~~~e~~l~ 133 (173)
T PF07445_consen 107 LYQRLAQHQEYERRLLAMIQEREQQLE 133 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666654443
No 360
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=30.38 E-value=2.5e+02 Score=21.58 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 043025 202 NHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGM 252 (403)
Q Consensus 202 ~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~ 252 (403)
..+..+......+......+...+.+...++..|.....+ ..++..+|.
T Consensus 10 ~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d--~~vyk~VG~ 58 (110)
T TIGR02338 10 AQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDD--TPVYKSVGN 58 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc--chhHHHhch
Confidence 3444555555566666667777777777777777666532 245555554
No 361
>cd07608 BAR_ArfGAP_fungi The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized fungal Arf GAP proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of uncharacterized fungal proteins containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and an Arf GTPase Activating Protein (GAP) domain. These proteins may play roles in Arf-mediated functions involving membrane dynamics. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=30.36 E-value=3.6e+02 Score=23.33 Aligned_cols=83 Identities=18% Similarity=0.123 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 192 KLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEG--DALGKAFSELGMKSEALSVKLQREAHQLL 269 (403)
Q Consensus 192 ~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~--~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (403)
++.+....|+..++.+.+...+++.... .....+|-..+..++.... ..+...+..+ ...+............
T Consensus 5 ~le~kt~~mr~~~Kkl~kr~~~~~ea~~--~~~~~~f~~ll~~~~~~~~~~~al~~yf~~~---~~~~~~~~~~~~~~lq 79 (192)
T cd07608 5 NLERKTRLLRSYLKRLIKRIVKLIEAQD--QLVDLEFNELLSEAKFKNDFNVALDSYFDPF---LLNLAFFLRDVCQDLQ 79 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhccccccHHHHHHhhHH---HHHHHHHHHHHHHHHH
Confidence 3444555566667777777666666553 2334445555555544431 2222323322 2333333334444455
Q ss_pred HhhhHHHHHH
Q 043025 270 MNFEEPLKDY 279 (403)
Q Consensus 270 ~~~~e~l~~~ 279 (403)
..+.+|+..+
T Consensus 80 ~~~iep~~~~ 89 (192)
T cd07608 80 LKKIEPLLKI 89 (192)
T ss_pred HHHHhhhhhc
Confidence 5555665443
No 362
>PLN02320 seryl-tRNA synthetase
Probab=30.19 E-value=5.9e+02 Score=25.76 Aligned_cols=26 Identities=15% Similarity=0.001 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 326 GEAEIEYKELKAESEDSTRRFETIVR 351 (403)
Q Consensus 326 ~~l~~~i~~~~~~~~~~~~~~~~i~~ 351 (403)
+++..+...+.+++..++..+..+..
T Consensus 133 ~~l~~~~k~lk~~i~~le~~~~~~~~ 158 (502)
T PLN02320 133 QALVEEGKNLKEGLVTLEEDLVKLTD 158 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333
No 363
>PRK14155 heat shock protein GrpE; Provisional
Probab=30.01 E-value=3.8e+02 Score=23.51 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043025 326 GEAEIEYKELKAESEDSTRRFET 348 (403)
Q Consensus 326 ~~l~~~i~~~~~~~~~~~~~~~~ 348 (403)
+.++.+|.+++.++..+++++-.
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR 38 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALR 38 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666665555555533
No 364
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=29.70 E-value=2.4e+02 Score=23.59 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 043025 324 KVGEAEIEYKELKAESEDS 342 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~ 342 (403)
|-.++++++++++.+++++
T Consensus 67 kwaKl~Rk~~kl~~el~~~ 85 (161)
T PF04420_consen 67 KWAKLNRKLDKLEEELEKL 85 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 365
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.51 E-value=9.3e+02 Score=27.81 Aligned_cols=9 Identities=11% Similarity=0.390 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 043025 112 GLDLFVNRI 120 (403)
Q Consensus 112 ~L~~fl~~~ 120 (403)
.+..|+...
T Consensus 664 ~~~k~ie~a 672 (1311)
T TIGR00606 664 VYSQFITQL 672 (1311)
T ss_pred HHHHHHHHH
Confidence 333444444
No 366
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=29.14 E-value=1e+03 Score=28.30 Aligned_cols=23 Identities=13% Similarity=-0.047 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 043025 375 FSKGQARLASSIADAWRTLLPKL 397 (403)
Q Consensus 375 ~a~~qi~~~~~~~~~We~~~~~~ 397 (403)
++..+|.-|+.....-+..+.++
T Consensus 923 ~a~s~i~~yqe~~~s~eqsl~~~ 945 (1822)
T KOG4674|consen 923 DALSQIREYQEEYSSLEQSLESV 945 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444444433
No 367
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=29.12 E-value=3e+02 Score=22.01 Aligned_cols=17 Identities=12% Similarity=0.374 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043025 219 RELGESLSDFGKAAKLL 235 (403)
Q Consensus 219 ~~l~~~~~~l~~~~~~l 235 (403)
+.|+++.+.++..+..+
T Consensus 39 r~m~~A~~~v~kql~~v 55 (126)
T PF07889_consen 39 RSMSDAVASVSKQLEQV 55 (126)
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 368
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=29.11 E-value=1.6e+02 Score=24.52 Aligned_cols=22 Identities=36% Similarity=0.397 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043025 326 GEAEIEYKELKAESEDSTRRFE 347 (403)
Q Consensus 326 ~~l~~~i~~~~~~~~~~~~~~~ 347 (403)
..++.+|..++.+++.+++.+.
T Consensus 14 ~~~~~~l~~l~~~~~~l~~~~~ 35 (165)
T PF01025_consen 14 EELEEELEELEKEIEELKERLL 35 (165)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444
No 369
>PHA02562 46 endonuclease subunit; Provisional
Probab=28.87 E-value=6.3e+02 Score=25.65 Aligned_cols=11 Identities=18% Similarity=0.374 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 043025 108 MRRQGLDLFVN 118 (403)
Q Consensus 108 ~R~~~L~~fl~ 118 (403)
+|+..|+.+++
T Consensus 151 er~~il~~l~~ 161 (562)
T PHA02562 151 ARRKLVEDLLD 161 (562)
T ss_pred hHHHHHHHHhC
Confidence 44455554443
No 370
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=28.84 E-value=4.5e+02 Score=23.95 Aligned_cols=53 Identities=13% Similarity=0.161 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 326 GEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKG 378 (403)
Q Consensus 326 ~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~ 378 (403)
...+..+...-..+......|..--..+-.-...++..|..-|+.+|.++...
T Consensus 185 ~k~~~~Y~~~l~~L~~~~~~y~e~m~~~fe~~Q~~E~eRi~F~K~~l~~~~~~ 237 (258)
T cd07679 185 LKTKEKYEKSLKELDQTTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKH 237 (258)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555556655555556667778888888889988887654
No 371
>PRK09866 hypothetical protein; Provisional
Probab=28.83 E-value=7.2e+02 Score=26.30 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=35.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHhc
Q 043025 265 AHQLLMNFEEPLKDYVRAVQSIKATIAERANAFR-QQCELAETMKLKEINLDKLM 318 (403)
Q Consensus 265 ~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~-~~~~~~~~l~~k~~~l~kl~ 318 (403)
+.+....+...+.....+...+++-++-|...++ ..+.++.++...+..++.+.
T Consensus 412 ~~a~~~al~sa~~kl~~~a~~~~d~l~~r~~gl~~~~~~L~~~I~~~e~d~~~l~ 466 (741)
T PRK09866 412 ANASLYALRSAAHKLLNYAQQAREYLDFRAHGLNVACEQLRQNIHQVEESLQLLQ 466 (741)
T ss_pred HhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445556677778888888888888888764 56666666655555555543
No 372
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=28.67 E-value=5.9e+02 Score=25.27 Aligned_cols=42 Identities=21% Similarity=0.359 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc
Q 043025 277 KDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLM 318 (403)
Q Consensus 277 ~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~ 318 (403)
..|+..-......+..|.+...++-.+...|.+|.+.+++|+
T Consensus 425 ~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ 466 (527)
T PF15066_consen 425 ANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQ 466 (527)
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHH
Confidence 446666666666788888889999999999999988887776
No 373
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=28.21 E-value=8.5e+02 Score=26.94 Aligned_cols=48 Identities=13% Similarity=0.112 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043025 355 EEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEACSS 402 (403)
Q Consensus 355 ~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~~~ 402 (403)
.++..-...-..|...+.......--.-...+...|+.+=..|..+.+
T Consensus 997 ~~lk~k~~~Ie~Dk~kI~ktI~~lDe~k~~~L~kaw~~VN~dFG~IFs 1044 (1174)
T KOG0933|consen 997 AALKTKKEIIEKDKSKIKKTIEKLDEKKREELNKAWEKVNKDFGSIFS 1044 (1174)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344444444555666666666666666777788888888777766543
No 374
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=28.11 E-value=4.1e+02 Score=23.20 Aligned_cols=40 Identities=20% Similarity=0.269 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 196 YIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLL 235 (403)
Q Consensus 196 ~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l 235 (403)
.+..+|+.+..|.....+++|.-+.+.+++.+++.+-..+
T Consensus 2 ~i~~~E~~~~~l~~~~~Kl~K~~~~~~~a~~~~~~a~~~F 41 (202)
T cd07606 2 QLQELEGSADELRDRSLKLYKGCRKYRDALGEAYDGDSAF 41 (202)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678889999999999999998888877777666554444
No 375
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=27.99 E-value=49 Score=18.56 Aligned_cols=11 Identities=27% Similarity=0.688 Sum_probs=6.5
Q ss_pred HHHHHHHHHHH
Q 043025 109 RRQGLDLFVNR 119 (403)
Q Consensus 109 R~~~L~~fl~~ 119 (403)
|+..|++||..
T Consensus 4 RK~SLqRFLeK 14 (27)
T PF09425_consen 4 RKASLQRFLEK 14 (27)
T ss_dssp --HHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66777777764
No 376
>PRK14139 heat shock protein GrpE; Provisional
Probab=27.77 E-value=3.9e+02 Score=22.94 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 043025 324 KVGEAEIEYKELKAESEDSTRRF 346 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~ 346 (403)
.+..++.+|..++.++..+++.+
T Consensus 33 e~~~l~~~l~~le~e~~elkd~~ 55 (185)
T PRK14139 33 AAPALEAELAEAEAKAAELQDSF 55 (185)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555554444
No 377
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=27.69 E-value=3.1e+02 Score=21.69 Aligned_cols=59 Identities=17% Similarity=0.259 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 043025 197 IFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEAL 257 (403)
Q Consensus 197 i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~ 257 (403)
+...-..+..+......++-....+...+.+.-.++..|...+.+. .++..+|..+-..
T Consensus 8 ~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~--~vYk~VG~llvk~ 66 (119)
T COG1382 8 VQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDA--PVYKKVGNLLVKV 66 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--HHHHHhhhHHhhh
Confidence 3444455666777777888888888899999888888887766432 4566666665544
No 378
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=27.65 E-value=6e+02 Score=24.99 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 189 EYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAK 233 (403)
Q Consensus 189 ~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~ 233 (403)
.+....+....++.+++.+.+....+.........++..+...+.
T Consensus 53 ~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~ 97 (420)
T COG4942 53 KIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIA 97 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence 334455555555555555555555555555555555555544443
No 379
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=27.48 E-value=7e+02 Score=25.76 Aligned_cols=30 Identities=17% Similarity=-0.048 Sum_probs=18.8
Q ss_pred ceEEeeccchHHHHHHHHHhhcCCccCC-CCCC
Q 043025 61 EKIVIRRYSDFVWLRDRLFEKYKGIFIP-PLPE 92 (403)
Q Consensus 61 ~~~v~RRysdF~~L~~~L~~~~p~~~iP-~lP~ 92 (403)
-.+|..+-.++..|.. |.+.|.. .++ |++|
T Consensus 82 LVQVTg~~g~~~sL~~-lArr~G~-~~~~~~~P 112 (652)
T COG2433 82 LVQVTGRPGEQESLWE-LARRHGI-RVNGKLNP 112 (652)
T ss_pred EEEEeCCCCCcchHHH-HHHHhCC-CCCCCCCh
Confidence 4678888778888765 6666643 333 4544
No 380
>PRK14147 heat shock protein GrpE; Provisional
Probab=27.48 E-value=3.8e+02 Score=22.69 Aligned_cols=25 Identities=12% Similarity=0.034 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFET 348 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~ 348 (403)
..+.++.+|..++.++..+++++-.
T Consensus 19 ~~~~l~~~l~~l~~e~~elkd~~lR 43 (172)
T PRK14147 19 ETDPLKAEVESLRSEIALVKADALR 43 (172)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444666666666666666666543
No 381
>PRK14162 heat shock protein GrpE; Provisional
Probab=27.47 E-value=4.1e+02 Score=23.04 Aligned_cols=39 Identities=10% Similarity=0.170 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 325 VGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQ 363 (403)
Q Consensus 325 i~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~ 363 (403)
++.++.++.+++..+..+..+|+.+.+.+..|.......
T Consensus 48 l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~ 86 (194)
T PRK14162 48 IADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKY 86 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555544433
No 382
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=27.46 E-value=6.7e+02 Score=25.52 Aligned_cols=65 Identities=15% Similarity=0.121 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHH
Q 043025 276 LKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESED 341 (403)
Q Consensus 276 l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~ 341 (403)
|++-....+.++..++.-..+...+..++.++...+.+++.+....+. +.+++..+.........
T Consensus 133 L~aaq~~ad~l~q~~~~~~~Aq~~l~~aq~~l~~lq~~a~~~~P~sp~-l~~a~~av~~a~~~a~~ 197 (593)
T PRK15374 133 LGEAQEATDLYEASIKKTDTAKSVYDAAEKKLTQAQNKLQSLDPADPG-YAQAEAAVEQAGKEATE 197 (593)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCChh-HHHHHHHHHHHHHHHHH
Confidence 333333334444444444445555555655555555555555444443 44444444444433333
No 383
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=27.30 E-value=3.3e+02 Score=21.94 Aligned_cols=30 Identities=13% Similarity=0.185 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 365 TLDMGIAFHNFSKGQARLASSIADAWRTLL 394 (403)
Q Consensus 365 ~~~l~~~l~~~a~~qi~~~~~~~~~We~~~ 394 (403)
..+|+.+|.+|-..|..|.+++-+.-.+-+
T Consensus 94 ~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq~ 123 (151)
T cd00179 94 SKKFVEVMTEFNKAQRKYRERYKERIQRQL 123 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888777766555443
No 384
>PRK14142 heat shock protein GrpE; Provisional
Probab=27.19 E-value=4.3e+02 Score=23.48 Aligned_cols=49 Identities=10% Similarity=0.064 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 325 VGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFH 373 (403)
Q Consensus 325 i~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~ 373 (403)
.+.+..++.+++..+..+..+|+.+.+.+..|.......-...|-..|.
T Consensus 42 ~~~~~~e~~elkdk~lR~~AEfEN~RKR~erE~e~~~~~A~e~~~kdLL 90 (223)
T PRK14142 42 AAHTEDKVAELTADLQRVQADFANYRKRALRDQQAAADRAKASVVSQLL 90 (223)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455677777788888888888888888888888776555444444433
No 385
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=27.04 E-value=5.3e+02 Score=24.22 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=17.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 323 DKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRF 360 (403)
Q Consensus 323 ~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f 360 (403)
++++....++.++..++..++..++.....-..|+.+.
T Consensus 239 ~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~L 276 (312)
T smart00787 239 SKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKL 276 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 34444445555555555555554444333333444433
No 386
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=26.66 E-value=7.2e+02 Score=25.63 Aligned_cols=13 Identities=15% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q 043025 348 TIVRLMNEEIVRF 360 (403)
Q Consensus 348 ~i~~~~~~El~~f 360 (403)
.|+++++....||
T Consensus 358 KiNECVKSQS~R~ 370 (610)
T PF01601_consen 358 KINECVKSQSSRY 370 (610)
T ss_dssp -------------
T ss_pred HHHHHHhcccccc
Confidence 3667777776665
No 387
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=26.34 E-value=4.1e+02 Score=22.69 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=17.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 322 SDKVGEAEIEYKELKAESEDSTRRFETI 349 (403)
Q Consensus 322 ~~ki~~l~~~i~~~~~~~~~~~~~~~~i 349 (403)
...+++++.+|.+.+.+++.++...+..
T Consensus 160 ~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667776666666666665554
No 388
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=26.26 E-value=4.8e+02 Score=23.46 Aligned_cols=50 Identities=14% Similarity=-0.004 Sum_probs=24.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLG 236 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~ 236 (403)
+.-+..+......+...+..+......+..-...++..+..|+.++..++
T Consensus 71 eki~~Rv~kr~~~l~~d~~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s 120 (240)
T cd07667 71 DRIAQRIIKEEIEYLVELREYGPVYSTWSGLEGELAEPLEGVSACIGNCS 120 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34444444444445554555555555555544555555555555544443
No 389
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=26.15 E-value=6e+02 Score=24.47 Aligned_cols=31 Identities=10% Similarity=0.034 Sum_probs=14.9
Q ss_pred cCCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHhc
Q 043025 86 FIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIAS 122 (403)
Q Consensus 86 ~iP~lP~k~~~~~~~~~~~~i~~R~~~L~~fl~~~~~ 122 (403)
+.|-|||-+... ..++.. +..|.......+.
T Consensus 85 ~~~df~p~kLk~--G~Ge~v----c~VLd~Lad~AL~ 115 (359)
T PF10498_consen 85 VPVDFPPSKLKQ--GSGEHV----CYVLDQLADEALK 115 (359)
T ss_pred CCCCCChHHhhC--CCCHHH----HHHHHHHHHHHHH
Confidence 444566665543 233333 3455555555444
No 390
>smart00721 BAR BAR domain.
Probab=25.80 E-value=4.5e+02 Score=22.96 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043025 199 ELENHLAEAQKHAYRLVKRHREL 221 (403)
Q Consensus 199 ~le~~l~~l~k~~~~l~k~~~~l 221 (403)
.++..+..+.+.+.++++.-..+
T Consensus 31 ~le~~~~~~~~~~~kl~k~~~~y 53 (239)
T smart00721 31 ELERRFDTTEAEIEKLQKDTKLY 53 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443333
No 391
>PRK09750 hypothetical protein; Provisional
Probab=25.73 E-value=87 Score=21.13 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=25.3
Q ss_pred EEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCC
Q 043025 45 SYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG 84 (403)
Q Consensus 45 ~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~ 84 (403)
-|.|......|+..... |-|||||.-=...-.+.+.+
T Consensus 3 kY~I~Ati~KpGg~P~~---W~r~s~~~mtk~ECeK~~s~ 39 (64)
T PRK09750 3 MYKITATIEKEGGTPTN---WTRYSKSKLTKSECEKMLSG 39 (64)
T ss_pred eeEEEEEEECCCCCccc---eeEecCCcCCHHHHHHHhcc
Confidence 48888887777654444 46999998776666655543
No 392
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.50 E-value=6.7e+02 Score=24.80 Aligned_cols=28 Identities=21% Similarity=0.197 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 325 VGEAEIEYKELKAESEDSTRRFETIVRL 352 (403)
Q Consensus 325 i~~l~~~i~~~~~~~~~~~~~~~~i~~~ 352 (403)
...+..++..+..+++.++...+.+...
T Consensus 70 ~~~l~~e~~~l~~~l~~~e~~~~~~~~~ 97 (429)
T COG0172 70 AEELIAEVKELKEKLKELEAALDELEAE 97 (429)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 4445555555555555555554444333
No 393
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=25.37 E-value=3.5e+02 Score=22.15 Aligned_cols=31 Identities=13% Similarity=0.195 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 348 TIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQ 379 (403)
Q Consensus 348 ~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~q 379 (403)
.|......++..+... ...|...+..|++.+
T Consensus 32 ~i~~~~~~~~~~l~~~-i~~l~~~l~~y~e~~ 62 (149)
T PF07352_consen 32 RIKEWYEAEIAPLQNR-IEYLEGLLQAYAEAN 62 (149)
T ss_dssp HHHHHHHHHCHHHHHH-HHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHC
Confidence 3333344444444432 344444555555444
No 394
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=24.94 E-value=4.6e+02 Score=22.72 Aligned_cols=37 Identities=11% Similarity=0.193 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRF 360 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f 360 (403)
++..++..+...+..+..+...++..++....++..-
T Consensus 126 kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e 162 (194)
T PF15619_consen 126 KLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASE 162 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4455555555555555555555555555555444433
No 395
>PHA03161 hypothetical protein; Provisional
Probab=24.80 E-value=4e+02 Score=21.98 Aligned_cols=52 Identities=17% Similarity=0.135 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 299 QQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQ 361 (403)
Q Consensus 299 ~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~ 361 (403)
-+..+...+..++..++-|..-+..|++.+ +.+.+........+..|+..+.
T Consensus 62 ~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~-----------E~L~drv~eLkeel~~ELe~l~ 113 (150)
T PHA03161 62 MLQAVDLSIQEKKKELSLLKAFDRHKLSAA-----------EDLQDKILELKEDIHFEIEALN 113 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566667777777776666666532 3333334444445666666665
No 396
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=24.64 E-value=7.2e+02 Score=24.89 Aligned_cols=20 Identities=15% Similarity=0.323 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043025 344 RRFETIVRLMNEEIVRFQEQ 363 (403)
Q Consensus 344 ~~~~~i~~~~~~El~~f~~~ 363 (403)
++...+-..+..++..|+..
T Consensus 414 ~~~~~~Ld~Ie~~Y~~fh~~ 433 (473)
T PF14643_consen 414 EKALDLLDQIEEEYEDFHKK 433 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344456666666644
No 397
>PRK15396 murein lipoprotein; Provisional
Probab=24.38 E-value=2.8e+02 Score=20.09 Aligned_cols=28 Identities=4% Similarity=0.096 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 325 VGEAEIEYKELKAESEDSTRRFETIVRL 352 (403)
Q Consensus 325 i~~l~~~i~~~~~~~~~~~~~~~~i~~~ 352 (403)
++++...++.+...++.++.+-.+.+..
T Consensus 41 vdql~~dv~~~~~~~~~a~~eA~raN~R 68 (78)
T PRK15396 41 VDQLSNDVNAMRSDVQAAKDDAARANQR 68 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444333
No 398
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=24.35 E-value=3.8e+02 Score=23.58 Aligned_cols=45 Identities=22% Similarity=0.236 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHH
Q 043025 290 IAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELK 336 (403)
Q Consensus 290 l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~ 336 (403)
+..|...+.+...++.++.+.+.++.+- ....+-.++..+|.+++
T Consensus 174 ~~~~~~~~~~i~~L~kei~~L~~~~~kE--kq~nrkveln~elk~l~ 218 (221)
T PF14335_consen 174 LWERIERLEQIEKLEKEIAKLKKKIKKE--KQFNRKVELNTELKKLK 218 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHH
Confidence 4455555555666655555555444432 22233344444444444
No 399
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=24.30 E-value=1.8e+02 Score=17.87 Aligned_cols=29 Identities=21% Similarity=0.231 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIVRL 352 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~~~ 352 (403)
+++++++-+-.++.++.+....+..|++.
T Consensus 5 ~ieelkqll~rle~eirett~sl~ninks 33 (46)
T PF08181_consen 5 KIEELKQLLWRLENEIRETTDSLRNINKS 33 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555555555544
No 400
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=24.23 E-value=7.6e+02 Score=25.06 Aligned_cols=21 Identities=19% Similarity=0.094 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHhcCcccc
Q 043025 107 EMRRQGLDLFVNRIASHPELQ 127 (403)
Q Consensus 107 ~~R~~~L~~fl~~~~~~~~l~ 127 (403)
..|--.|+.+=+.|...|+.-
T Consensus 27 ~~rI~~LEe~K~el~~lPv~d 47 (570)
T COG4477 27 YQRIDKLEERKNELLNLPVND 47 (570)
T ss_pred HHHHHHHHHHHHHHHcCCchh
Confidence 345567888888888888743
No 401
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=24.03 E-value=4.2e+02 Score=21.98 Aligned_cols=45 Identities=16% Similarity=0.250 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHH
Q 043025 299 QQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTR 344 (403)
Q Consensus 299 ~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~ 344 (403)
++..+...|.....++..|+.. ..-++.|+.+|..++.....+..
T Consensus 28 e~~~~k~ql~~~d~~i~~Lk~~-~~d~eeLk~~i~~lq~~~~~~~~ 72 (155)
T PF06810_consen 28 ERDNLKTQLKEADKQIKDLKKS-AKDNEELKKQIEELQAKNKTAKE 72 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHH
Confidence 5555555666666666666542 23455666666666665553333
No 402
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=24.03 E-value=2e+02 Score=19.08 Aligned_cols=37 Identities=16% Similarity=0.278 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 043025 281 RAVQSIKATIAERANAFRQQCELAETMKLKEINLDKL 317 (403)
Q Consensus 281 ~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl 317 (403)
+.+..+|.+....+..+.++..+...++..+.++.|+
T Consensus 14 GDLa~MK~l~~~aeq~L~~~~~i~~al~~Lk~EIakl 50 (53)
T PF08898_consen 14 GDLAQMKALAAQAEQQLAEAGDIAAALEKLKAEIAKL 50 (53)
T ss_pred CcHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 3455567777777777766666666665555555444
No 403
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=23.98 E-value=5.5e+02 Score=23.27 Aligned_cols=13 Identities=8% Similarity=0.015 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 043025 325 VGEAEIEYKELKA 337 (403)
Q Consensus 325 i~~l~~~i~~~~~ 337 (403)
+..+..-+.++..
T Consensus 194 L~Dl~~~l~eA~~ 206 (264)
T PF06008_consen 194 LQDLRDLLNEAQN 206 (264)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 404
>PF06802 DUF1231: Protein of unknown function (DUF1231); InterPro: IPR009633 This family consists of several Orthopoxvirus specific proteins predominantly of around 340 residues in length. This family contains the Vaccinia virus, B17 protein, the function of which is unknown.
Probab=23.96 E-value=1.5e+02 Score=25.43 Aligned_cols=61 Identities=23% Similarity=0.313 Sum_probs=32.0
Q ss_pred CCCCCCcEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCC
Q 043025 19 SPSSQPYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEK 93 (403)
Q Consensus 19 ~~~~~~~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k 93 (403)
+|.|+..+-.+.+|..+.-.| |+--.|+.-. ++--+.-.-.|.-...||+.+. .+||+|-.
T Consensus 181 aplpgnvlvytfpdinkripg---yihlniegci-----dgmiyinsskfacvlklhrsmy------rippfpid 241 (340)
T PF06802_consen 181 APLPGNVLVYTFPDINKRIPG---YIHLNIEGCI-----DGMIYINSSKFACVLKLHRSMY------RIPPFPID 241 (340)
T ss_pred CCCCCcEEEEecCcccccCCc---eEEEeeeeee-----ceEEEEcccceeeeeehhhhhh------cCCCCCcc
Confidence 355555666677776666544 4555554322 2222333334444455665543 48999954
No 405
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=23.81 E-value=6.1e+02 Score=23.81 Aligned_cols=32 Identities=13% Similarity=0.149 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCChhhhcccccCh
Q 043025 105 FIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADE 140 (403)
Q Consensus 105 ~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~ 140 (403)
+|.+-|..+..+=..+...+. +.|+.+.+.+.
T Consensus 78 ~I~egr~~~~~~E~et~~~nP----pLF~EY~~a~~ 109 (312)
T smart00787 78 YISEGRDLFKEIEEETLINNP----PLFKEYFSASP 109 (312)
T ss_pred HHHHHHHHHHHHHHHHhhcCc----HHHHHHHcCCH
Confidence 444444444444444442221 34555555443
No 406
>PF12443 AKNA: AT-hook-containing transcription factor; InterPro: IPR022150 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. This family contains a transcription factor which regulates the expression of the costimulatory molecules on lymphocytes.
Probab=23.52 E-value=1.1e+02 Score=23.55 Aligned_cols=33 Identities=18% Similarity=0.364 Sum_probs=28.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 323 DKVGEAEIEYKELKAESEDSTRRFETIVRLMNE 355 (403)
Q Consensus 323 ~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~ 355 (403)
+++.+++.+|.++....++++.+.+.+++.+..
T Consensus 45 ~~~~ege~~~qkL~eqteeLK~kvqe~sk~i~~ 77 (106)
T PF12443_consen 45 DKIREGEQMIQKLGEQTEELKDKVQEFSKRIEQ 77 (106)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHhcCcCC
Confidence 688999999999999999999998888776543
No 407
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=23.46 E-value=2.4e+02 Score=18.98 Aligned_cols=28 Identities=7% Similarity=0.225 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIVR 351 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~~ 351 (403)
|+.+|..+|..+..++.++..+...+.-
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~ 31 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRA 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666555554443
No 408
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=23.26 E-value=7.4e+02 Score=24.58 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 339 SEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAF 372 (403)
Q Consensus 339 ~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l 372 (403)
+++++.+.+.+......++..-.+.-..+++.-+
T Consensus 88 ~~~A~~ea~~i~~~a~~~Ie~ek~~a~~elr~ei 121 (445)
T PRK13428 88 RAQADAEAERIKVQGARQVQLLRAQLTRQLRLEL 121 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555554444444444333
No 409
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=23.15 E-value=5.9e+02 Score=23.41 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 328 AEIEYKELKAESEDSTRRFETIVRLMN 354 (403)
Q Consensus 328 l~~~i~~~~~~~~~~~~~~~~i~~~~~ 354 (403)
++-.+.++..+++++++..+.+...+.
T Consensus 115 AQLALKEARkEIkQLkQvieTmrssL~ 141 (305)
T PF15290_consen 115 AQLALKEARKEIKQLKQVIETMRSSLA 141 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 344555566666666666655544443
No 410
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=23.15 E-value=4.1e+02 Score=21.56 Aligned_cols=22 Identities=14% Similarity=0.144 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043025 366 LDMGIAFHNFSKGQARLASSIA 387 (403)
Q Consensus 366 ~~l~~~l~~~a~~qi~~~~~~~ 387 (403)
.++..-+..|......||.+.+
T Consensus 124 ~d~~~Fl~~f~~~R~~yH~R~~ 145 (150)
T PF07200_consen 124 IDVDDFLKQFKEKRKLYHLRRA 145 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHHHHHHHh
Confidence 4667778888888888887754
No 411
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=23.12 E-value=4.5e+02 Score=22.04 Aligned_cols=35 Identities=6% Similarity=0.061 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 339 SEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFH 373 (403)
Q Consensus 339 ~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~ 373 (403)
+..++.+.+.+......++..-...-..+++.-+.
T Consensus 106 ~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~qi~ 140 (174)
T PRK07352 106 EKQAIEDMARLKQTAAADLSAEQERVIAQLRREAA 140 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555554444444444333
No 412
>PRK09039 hypothetical protein; Validated
Probab=23.05 E-value=6.6e+02 Score=23.92 Aligned_cols=7 Identities=29% Similarity=0.748 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 043025 356 EIVRFQE 362 (403)
Q Consensus 356 El~~f~~ 362 (403)
|+.+|..
T Consensus 191 ~l~~~~~ 197 (343)
T PRK09039 191 ELNRYRS 197 (343)
T ss_pred HHHHhHH
Confidence 4444443
No 413
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=23.01 E-value=4.1e+02 Score=21.45 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHH-HHhHHHhcccCcchHHHHHHHHHHHHHHHHHHH
Q 043025 296 AFRQQCELAETMKLK-EINLDKLMLTRSDKVGEAEIEYKELKAESEDST 343 (403)
Q Consensus 296 ~~~~~~~~~~~l~~k-~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~ 343 (403)
+...|..+....+.. ...|.+|.-....-++.|...|.+++.+++.+.
T Consensus 81 ~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l~ 129 (132)
T PF05597_consen 81 ATGQWDKLEQAFDERVARALNRLGVPSRKDVEALSARIDQLTAQVERLA 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444332 334555543334557777777777777766654
No 414
>PRK14163 heat shock protein GrpE; Provisional
Probab=22.97 E-value=5.3e+02 Score=22.76 Aligned_cols=21 Identities=5% Similarity=0.158 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043025 326 GEAEIEYKELKAESEDSTRRF 346 (403)
Q Consensus 326 ~~l~~~i~~~~~~~~~~~~~~ 346 (403)
+.++.+|..++.++..+++.+
T Consensus 43 ~~l~~~l~~l~~e~~el~d~~ 63 (214)
T PRK14163 43 AGLTAQLDQVRTALGERTADL 63 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555444
No 415
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=22.76 E-value=3.2e+02 Score=20.16 Aligned_cols=11 Identities=9% Similarity=0.296 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 043025 339 SEDSTRRFETI 349 (403)
Q Consensus 339 ~~~~~~~~~~i 349 (403)
+...+.+++.|
T Consensus 59 l~~mK~DLd~i 69 (88)
T PF10241_consen 59 LKEMKKDLDYI 69 (88)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 416
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=22.64 E-value=5e+02 Score=22.38 Aligned_cols=17 Identities=35% Similarity=0.358 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhhh
Q 043025 223 ESLSDFGKAAKLLGACE 239 (403)
Q Consensus 223 ~~~~~l~~~~~~l~~~e 239 (403)
++...|......|+..|
T Consensus 66 d~~~~f~~~~~tl~~LE 82 (190)
T PF05266_consen 66 DSRSSFESLMKTLSELE 82 (190)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 34555666666666555
No 417
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=22.53 E-value=9.4e+02 Score=25.49 Aligned_cols=116 Identities=7% Similarity=0.002 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccc--CcchHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Q 043025 285 SIKATIAERANAFRQQCELAETMKLKEINLDKLMLT--RSDKVGEAEIEYKELKAESEDSTRRF-----ETIVRLMNEEI 357 (403)
Q Consensus 285 s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~--~~~ki~~l~~~i~~~~~~~~~~~~~~-----~~i~~~~~~El 357 (403)
++.++..+|..++..|..++.+++..+.++-.-+.. -..=..++...++.++..+..+.... ..+...+.+++
T Consensus 236 a~e~L~~r~~~L~~k~~~L~~e~~~LK~ELiedRW~~vFr~l~~q~~~m~esver~~~kl~~~~~~~~~~~~~~~l~~~i 315 (683)
T PF08580_consen 236 ACEELEDRYERLEKKWKKLEKEAESLKKELIEDRWNIVFRNLGRQAQKMCESVERSLSKLQEAIDSGIHLDNPSKLSKQI 315 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHH
Confidence 333444444445556666666555554443221100 00112334444444444443333331 11223377888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHH-HHHHHHHHHHHHHhhhc
Q 043025 358 VRFQEQKTLDMGIAFHNFSKGQA-----RLA-SSIADAWRTLLPKLEAC 400 (403)
Q Consensus 358 ~~f~~~r~~~l~~~l~~~a~~qi-----~~~-~~~~~~We~~~~~~~~~ 400 (403)
..++..+...+..+.++++..-| ... .+++.-|..+.+.++.+
T Consensus 316 ~s~~~k~~~~~~~I~ka~~~sIi~~gv~~r~n~~L~~rW~~L~~~~d~~ 364 (683)
T PF08580_consen 316 ESKEKKKSHYFPAIYKARVLSIIDKGVADRLNADLAQRWLELKEDMDSL 364 (683)
T ss_pred HHHHHHHhccHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHh
Confidence 88888888777777566555433 233 48999999998766654
No 418
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=22.50 E-value=6e+02 Score=23.21 Aligned_cols=148 Identities=13% Similarity=0.191 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhH--
Q 043025 241 DALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAV-QSIK---ATIAERANAFRQQCELAETMKLKEINL-- 314 (403)
Q Consensus 241 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~-~s~k---~~l~~R~~~~~~~~~~~~~l~~k~~~l-- 314 (403)
+.+..++..+-...+.++......+..+.. +.+.+..|..-. ..-| +.+..=..+...+......+.+.+...
T Consensus 63 Gt~~~~~~~~~~e~e~~a~~H~~la~~L~~-~~~~l~~~~~~~~k~rK~~ke~~~~~~~~~~~~~~~~~~~~KaK~~Y~~ 141 (269)
T cd07673 63 GTFAPVWDVFKTSTEKLANCHLELVRKLQE-LIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQNIQSITQALQKSKENYNA 141 (269)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666665555555442 334455544221 1111 111111112222333333333332222
Q ss_pred -----HHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 315 -----DKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADA 389 (403)
Q Consensus 315 -----~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~ 389 (403)
++++. ...-..+|+++..+++.+.+.+......+...-.+|.. .....-+.|+++=+..|.+-+..+..
T Consensus 142 ~c~e~e~~~~-----~~~t~k~leK~~~k~~ka~~~Y~~~v~~l~~~~~~~~~-~m~~~~~~~Q~~Ee~Ri~~~k~~l~~ 215 (269)
T cd07673 142 KCLEQERLKK-----EGATQREIEKAAVKSKKATESYKLYVEKYALAKADFEQ-KMTETAQKFQDIEETHLIRIKEIIGS 215 (269)
T ss_pred HHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 11124566666777777777777776666666667754 34666667777777777777777766
Q ss_pred HHHHHH
Q 043025 390 WRTLLP 395 (403)
Q Consensus 390 We~~~~ 395 (403)
..+...
T Consensus 216 y~~~~s 221 (269)
T cd07673 216 YSNSVK 221 (269)
T ss_pred HHHHHH
Confidence 555443
No 419
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=22.25 E-value=6e+02 Score=23.14 Aligned_cols=60 Identities=8% Similarity=0.128 Sum_probs=29.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 323 DKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLA 383 (403)
Q Consensus 323 ~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~ 383 (403)
.++..|+.++.+++.++..+..++.+.+.=.-.|.+-=- -....+..-+......|-.--
T Consensus 81 ~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~-vqIa~L~rqlq~lk~~qqdEl 140 (258)
T PF15397_consen 81 SKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKA-VQIANLVRQLQQLKDSQQDEL 140 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666666655544443433211 123344444444444443333
No 420
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=22.11 E-value=9.4e+02 Score=25.31 Aligned_cols=22 Identities=9% Similarity=0.116 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 043025 218 HRELGESLSDFGKAAKLLGACE 239 (403)
Q Consensus 218 ~~~l~~~~~~l~~~~~~l~~~e 239 (403)
...++..+.+|..+++.++...
T Consensus 103 ~~gls~~L~~Ff~alq~la~~P 124 (651)
T PRK06945 103 TAGLSPAITSFFTGLQNVANNP 124 (651)
T ss_pred CcchHHHHHHHHHHHHHHHhCC
Confidence 3567888888888888887643
No 421
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=21.98 E-value=4.8e+02 Score=21.91 Aligned_cols=38 Identities=11% Similarity=0.124 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 339 SEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFS 376 (403)
Q Consensus 339 ~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a 376 (403)
+..++.+.+.+......++..-...-..+++....+.+
T Consensus 105 ~~~A~~ea~~~~~~a~~~I~~e~~~a~~~l~~~i~~lA 142 (175)
T PRK14472 105 TEKAHTEAKKMIASAKEEIEQEKRRALDVLRNEVADLA 142 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554444444444444433
No 422
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=21.86 E-value=5e+02 Score=22.05 Aligned_cols=22 Identities=9% Similarity=0.084 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHH
Q 043025 284 QSIKATIAERANAFR-QQCELAE 305 (403)
Q Consensus 284 ~s~k~~l~~R~~~~~-~~~~~~~ 305 (403)
..+..+|..|...+. .+..+.+
T Consensus 47 kPI~~~l~~R~~~I~~~l~~Ae~ 69 (184)
T CHL00019 47 GVLSDLLDNRKQTILNTIRNSEE 69 (184)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777766543 3444443
No 423
>PRK14162 heat shock protein GrpE; Provisional
Probab=21.78 E-value=5.3e+02 Score=22.35 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=25.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 322 SDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLD 367 (403)
Q Consensus 322 ~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~ 367 (403)
.+.+..++.+|..++.++..+++.+-. +..|+..|.++...+
T Consensus 38 ~~e~~~l~~~l~~l~~e~~elkd~~lR----~~AEfeN~rkR~~kE 79 (194)
T PRK14162 38 QNPVEDLEKEIADLKAKNKDLEDKYLR----SQAEIQNMQNRYAKE 79 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 345677777788887777777776644 445555555443333
No 424
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=21.76 E-value=7e+02 Score=23.73 Aligned_cols=24 Identities=33% Similarity=0.317 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 325 VGEAEIEYKELKAESEDSTRRFET 348 (403)
Q Consensus 325 i~~l~~~i~~~~~~~~~~~~~~~~ 348 (403)
.+-++.+|..++.++..++.++..
T Consensus 78 ~ema~~Ei~~~~~~~~~le~~L~~ 101 (363)
T COG0216 78 REMAEEEIKELEAKIEELEEELKI 101 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566676666666666666543
No 425
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=21.74 E-value=5.9e+02 Score=22.82 Aligned_cols=195 Identities=11% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 194 KHYIFELENHLAEAQKHAYRLVKRH--------RELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREA 265 (403)
Q Consensus 194 ~~~i~~le~~l~~l~k~~~~l~k~~--------~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~ 265 (403)
+..+..+...+.++...++.-...+ ..+...+..+-..++.-..--.+.....-..+......+........
T Consensus 4 ~~KL~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~ 83 (247)
T PF06705_consen 4 KSKLASINERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQI 83 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHhcccCcch----HHHHHHHHHHHH
Q 043025 266 HQLLMNFEEPLKDYVRAVQSIKATIAERANAFR-----QQCELAETMKLKEINLDKLMLTRSDK----VGEAEIEYKELK 336 (403)
Q Consensus 266 ~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~-----~~~~~~~~l~~k~~~l~kl~~~~~~k----i~~l~~~i~~~~ 336 (403)
..-...+...+.....-+.++...+..-..... ....+.+.+......++.-+..+.++ +..+......+.
T Consensus 84 ~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~ 163 (247)
T PF06705_consen 84 SEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEEENRLQ 163 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 337 AESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADA 389 (403)
Q Consensus 337 ~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~ 389 (403)
..++.-+..-+.....+..++......+ ..-...|..|+-..+...+..+..
T Consensus 164 ~~i~~Ek~~Re~~~~~l~~~le~~~~~~-~~~~e~f~~~v~~Ei~~lk~~l~~ 215 (247)
T PF06705_consen 164 EKIEKEKNTRESKLSELRSELEEVKRRR-EKGDEQFQNFVLEEIAALKNALAL 215 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHH
No 426
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=21.68 E-value=2.3e+02 Score=18.15 Aligned_cols=25 Identities=8% Similarity=0.123 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 326 GEAEIEYKELKAESEDSTRRFETIV 350 (403)
Q Consensus 326 ~~l~~~i~~~~~~~~~~~~~~~~i~ 350 (403)
+.|.+++..++.+++.++..|....
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yK 26 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYK 26 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666655443
No 427
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=21.63 E-value=5.6e+02 Score=22.50 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 345 RFETIVRLMNEEIVRFQEQKTLDM 368 (403)
Q Consensus 345 ~~~~i~~~~~~El~~f~~~r~~~l 368 (403)
....+...+..+-..|...+...+
T Consensus 141 ~~~ea~~~l~~~R~~F~~~~ldYv 164 (207)
T cd07634 141 HLQRADTQIDREHQNFYEASLEYV 164 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666665544333
No 428
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=21.61 E-value=1.6e+02 Score=31.58 Aligned_cols=94 Identities=16% Similarity=0.121 Sum_probs=61.8
Q ss_pred ceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCC---CC------CccccccCCCHHHHHHHHHH
Q 043025 42 AYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPL---PE------KSAVEKFRFSAEFIEMRRQG 112 (403)
Q Consensus 42 ~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~l---P~------k~~~~~~~~~~~~i~~R~~~ 112 (403)
+-..|++.... ..-.|.|.+-+..|..||..|...--+..+|.+ +. +.... ..+....-+++..
T Consensus 65 ~~~~y~v~L~h-----G~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~ 137 (887)
T KOG1329|consen 65 SSGSYTVELLH-----GTLDWTIKKATKLHNMLHFHLHARLLGESFPDLGRLNINDNHDEKPSGP--RSSLNSSMEKRKT 137 (887)
T ss_pred CCcceeeeeec-----CcEEEEEEecchhhhHHhHHHhhhhhcccccccccccccccccccCCCc--cCCcccchhhhhh
Confidence 34567777653 335699999999999999888653322222210 00 11111 1122222456667
Q ss_pred HHHHHHHHhcCccccCChhhhcccccChhh
Q 043025 113 LDLFVNRIASHPELQQSEDLKTFLQADEET 142 (403)
Q Consensus 113 L~~fl~~~~~~~~l~~~~~~~~FL~~~~~~ 142 (403)
++.||+.++..+.+++......||+.+-..
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~ 167 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWS 167 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhh
Confidence 999999999999999999999999887654
No 429
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=21.56 E-value=6.3e+02 Score=23.15 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 367 DMGIAFHNFSKGQARLASSIADAWRT 392 (403)
Q Consensus 367 ~l~~~l~~~a~~qi~~~~~~~~~We~ 392 (403)
..+..-..|.+.|+...++.++..+.
T Consensus 91 q~Ke~qv~~lEgQl~s~Kkqie~Leq 116 (307)
T PF10481_consen 91 QVKESQVNFLEGQLNSCKKQIEKLEQ 116 (307)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777888888777777666553
No 430
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=21.56 E-value=9.1e+02 Score=24.99 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043025 218 HRELGESLSDFGKAAKLL 235 (403)
Q Consensus 218 ~~~l~~~~~~l~~~~~~l 235 (403)
+..|+.++..+-..-+.|
T Consensus 344 RDALAAA~kAY~~yk~kl 361 (652)
T COG2433 344 RDALAAAYKAYLAYKPKL 361 (652)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555544444333333
No 431
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=21.40 E-value=5.6e+02 Score=22.49 Aligned_cols=43 Identities=23% Similarity=0.395 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 188 PEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGK 230 (403)
Q Consensus 188 ~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~ 230 (403)
+.+.+.+.....+..+.+.+.+....++..++.+|+.+.++|.
T Consensus 9 e~L~~t~~~Y~~l~~~~~~l~~~f~~l~qtqk~~Gd~Fa~l~~ 51 (215)
T cd07659 9 EELEQTAELYKGLVEHTKRLLRAFYALSQTHKEFGDLFANIGV 51 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3556667777777788888889999999999999999999885
No 432
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=21.34 E-value=2.6e+02 Score=20.49 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=8.9
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 043025 323 DKVGEAEIEYKELKAESEDS 342 (403)
Q Consensus 323 ~ki~~l~~~i~~~~~~~~~~ 342 (403)
.|+..++..+..++.+...+
T Consensus 15 ~Kiae~Q~rlK~Le~qk~E~ 34 (83)
T PF14193_consen 15 EKIAELQARLKELEAQKTEA 34 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 433
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=20.96 E-value=9.7e+02 Score=25.04 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 043025 219 RELGESLSDFGKAAKLLGACE 239 (403)
Q Consensus 219 ~~l~~~~~~l~~~~~~l~~~e 239 (403)
..++..+.+|..+++.++...
T Consensus 103 ~gls~~l~~ff~alq~la~~P 123 (624)
T PRK12714 103 TNVAGLWSNFFDSTSALSSNA 123 (624)
T ss_pred CcHHHHHHHHHHHHHHHHhCC
Confidence 568888888888888887643
No 434
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=20.90 E-value=9e+02 Score=24.68 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 043025 219 RELGESLSDFGKAAKLLGACE 239 (403)
Q Consensus 219 ~~l~~~~~~l~~~~~~l~~~e 239 (403)
..++..+..|-.+++.++...
T Consensus 104 ~gl~~~l~~ff~a~~~ls~~P 124 (547)
T PRK08147 104 NSLSTTMQDFFTSLQTLVSNA 124 (547)
T ss_pred cchHHHHHHHHHHHHHHHhCC
Confidence 467888888888888887643
No 435
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=20.75 E-value=9.2e+02 Score=24.71 Aligned_cols=188 Identities=13% Similarity=0.079 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhh--hhhHHHHHHHHH--------
Q 043025 188 PEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGES------LSDFGKAAKLLGACE--GDALGKAFSELG-------- 251 (403)
Q Consensus 188 ~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~------~~~l~~~~~~l~~~e--~~~L~~~~~~~~-------- 251 (403)
..+.+.+..+..+...-....+..+.+-....++... ..++-.....|+..+ ...+..++..+.
T Consensus 168 ~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n~e~i~~~~~~~~~~L~~~~~~~~~ 247 (563)
T TIGR00634 168 QAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLEKLRELSQNALAALRGDVDVQEG 247 (563)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhCHHHHHHHHHHHHHHHhCCcccccc
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc-------------
Q 043025 252 MKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLM------------- 318 (403)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~------------- 318 (403)
...+.++.............+.+...........+.++...=......+..--..+...+..+..+.
T Consensus 248 ~~~~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l 327 (563)
T TIGR00634 248 SLLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEV 327 (563)
T ss_pred CHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Q ss_pred -------ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 319 -------LTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNF 375 (403)
Q Consensus 319 -------~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~ 375 (403)
..+-+.+...+..+++++.+++.++.++......+...-...-..-...+...|..+
T Consensus 328 ~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~~v~~~l~~L 391 (563)
T TIGR00634 328 LEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAKRVEQELKAL 391 (563)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 436
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=20.56 E-value=5.7e+02 Score=23.64 Aligned_cols=12 Identities=8% Similarity=-0.017 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHh
Q 043025 302 ELAETMKLKEIN 313 (403)
Q Consensus 302 ~~~~~l~~k~~~ 313 (403)
.+.+.-++|+++
T Consensus 238 AAtRYRqKkRae 249 (294)
T KOG4571|consen 238 AATRYRQKKRAE 249 (294)
T ss_pred HHHHHHHHHHHH
Confidence 333333344433
No 437
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=20.52 E-value=1.1e+02 Score=22.37 Aligned_cols=19 Identities=42% Similarity=0.592 Sum_probs=15.6
Q ss_pred hHHHHHHHHHhhcCCccCC
Q 043025 70 DFVWLRDRLFEKYKGIFIP 88 (403)
Q Consensus 70 dF~~L~~~L~~~~p~~~iP 88 (403)
-.+.|.++|.+.||+..+|
T Consensus 31 t~E~l~~~L~~~yp~i~~P 49 (80)
T PF10264_consen 31 TQETLREHLRKHYPGIAIP 49 (80)
T ss_pred hHHHHHHHHHHhCCCCCCC
Confidence 4678999999999997644
No 438
>PRK14154 heat shock protein GrpE; Provisional
Probab=20.43 E-value=5.9e+02 Score=22.35 Aligned_cols=41 Identities=5% Similarity=0.131 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDM 368 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l 368 (403)
.+..++.+|..++.++..+++++-. +..|+..|.+....+.
T Consensus 53 ~~~~l~~el~~le~e~~elkd~~lR----l~ADfeNyRKR~~kE~ 93 (208)
T PRK14154 53 SREKLEGQLTRMERKVDEYKTQYLR----AQAEMDNLRKRIEREK 93 (208)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 4666777777777777777666633 4555555554443333
No 439
>PRK14151 heat shock protein GrpE; Provisional
Probab=20.43 E-value=5.4e+02 Score=21.89 Aligned_cols=21 Identities=10% Similarity=0.148 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043025 326 GEAEIEYKELKAESEDSTRRF 346 (403)
Q Consensus 326 ~~l~~~i~~~~~~~~~~~~~~ 346 (403)
..++.+|..++.++..+++++
T Consensus 23 ~~l~~~i~~le~e~~el~d~~ 43 (176)
T PRK14151 23 DDLTARVQELEEQLAAAKDQS 43 (176)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 440
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=20.36 E-value=6e+02 Score=22.41 Aligned_cols=32 Identities=16% Similarity=0.064 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043025 369 GIAFHNFSKGQARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 369 ~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~ 400 (403)
..+|.-+...+.--+++..+..+.++..+.+.
T Consensus 157 ~~aLdYv~qLn~lQ~rKKfefLe~lLs~m~A~ 188 (215)
T cd07631 157 QTMMHYFCALNTLQYKKKIALLEPLLGYMQAQ 188 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777888888899999999888877764
No 441
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=20.30 E-value=6.6e+02 Score=22.89 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 043025 191 EKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKL 261 (403)
Q Consensus 191 ~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~ 261 (403)
..+...+..+...+..+...+..+..+..++...+.++......+.+-. ..|...+..+...........
T Consensus 45 ~~ln~~~~~l~~~l~~l~~v~~~~a~aapdL~~~l~~~~~~s~tL~~~~-~~L~~lL~~~~~~a~~~~~~l 114 (267)
T PF11887_consen 45 ATLNPRLPQLREDLRNLADVADTYADAAPDLLDALDNLTTTSRTLVDQR-QQLDALLLSATGLADTGTDFL 114 (267)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444455555555555555555555555555555554433 235555555544444444433
Done!