Query 043025
Match_columns 403
No_of_seqs 199 out of 1592
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 21:13:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043025.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043025hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dyt_A Sorting nexin-9; 3-heli 100.0 5.5E-53 1.9E-57 402.0 27.6 337 22-400 17-366 (366)
2 4akv_A Sorting nexin-33; trans 100.0 1.3E-52 4.3E-57 400.7 27.7 334 24-399 40-385 (386)
3 3iq2_A Sorting nexin-7; SNX7, 100.0 3.7E-31 1.3E-35 215.8 12.2 120 22-141 5-126 (138)
4 1ocs_A Sorting nexin GRD19; so 100.0 5.5E-30 1.9E-34 214.7 12.0 118 22-140 32-159 (162)
5 2csk_A Sorting nexin 12; SNX12 100.0 4.7E-30 1.6E-34 212.2 11.1 119 22-141 7-132 (146)
6 3hpc_X SNX5 protein; sprting n 100.0 1.4E-29 4.6E-34 209.9 11.8 117 22-142 8-153 (161)
7 2i4k_A Sorting nexin-1, SNX1; 100.0 1.6E-29 5.5E-34 205.0 4.6 114 26-139 4-127 (128)
8 3lui_A Sorting nexin-17, SNX17 99.9 1.7E-27 5.7E-32 188.3 7.9 106 25-141 3-110 (115)
9 1xte_A Serine/threonine-protei 99.9 2.1E-25 7E-30 185.6 10.4 112 24-142 6-117 (154)
10 1kmd_A VAM7P, vacuolar morphog 99.9 2.3E-25 7.8E-30 176.8 7.7 104 24-141 4-116 (117)
11 2v14_A Kinesin-like motor prot 99.9 1.2E-24 4E-29 176.6 11.3 102 25-133 5-107 (134)
12 3p0c_A Nischarin; structural g 99.9 1.6E-24 5.6E-29 174.6 7.7 114 16-141 13-126 (130)
13 1h6h_A Neutrophil cytosol fact 99.9 1.1E-23 3.9E-28 173.4 11.5 112 24-143 19-139 (143)
14 4az9_A Sorting nexin-24; prote 99.9 2.2E-23 7.5E-28 167.3 11.6 118 9-140 8-126 (129)
15 2ar5_A Phosphoinositide 3-kina 99.9 3.3E-23 1.1E-27 165.0 11.5 109 25-140 5-116 (121)
16 2ett_A Sorting nexin-22; PX do 99.9 3.2E-22 1.1E-26 160.3 7.8 90 39-140 28-117 (128)
17 1kq6_A NCF-1, P47PHOX, neutrop 99.9 1.9E-21 6.7E-26 159.3 12.4 110 25-143 6-125 (141)
18 2iwl_X Phosphatidylinositol-4- 99.9 7.6E-22 2.6E-26 161.4 7.7 112 24-141 19-132 (140)
19 2l73_A NADPH oxidase organizer 99.8 1.5E-19 5.1E-24 148.3 7.9 113 26-143 9-131 (149)
20 2v6v_A BUD emergence protein 1 99.8 9.7E-19 3.3E-23 144.6 12.6 108 25-144 18-140 (156)
21 2wwe_A Phosphoinositide-3-kina 99.7 7.6E-17 2.6E-21 124.8 7.3 101 25-138 25-126 (127)
22 2fic_A Bridging integrator 1; 99.7 8.1E-14 2.8E-18 125.8 28.1 201 186-401 50-250 (251)
23 1uru_A Amphiphysin; endocytosi 99.6 6E-14 2.1E-18 126.2 24.2 202 187-401 36-237 (244)
24 2dyb_A Neutrophil cytosol fact 99.6 2.5E-15 8.4E-20 141.6 11.2 111 24-142 22-141 (341)
25 4avm_A Bridging integrator 2; 99.4 2.4E-10 8.1E-15 101.5 29.0 201 185-400 30-230 (237)
26 4a3a_A Amphiphysin; structural 99.4 5.1E-10 1.7E-14 99.5 27.3 199 187-400 37-235 (243)
27 1zww_A SH3-containing GRB2-lik 99.1 2.9E-08 1E-12 89.3 24.1 191 185-400 28-243 (256)
28 2z0v_A SH3-containing GRB2-lik 99.0 6.4E-08 2.2E-12 86.2 22.1 186 185-400 12-227 (240)
29 2q12_A DIP13 alpha, DCC-intera 98.8 4.5E-06 1.5E-10 75.5 27.5 196 194-401 27-230 (265)
30 2q13_A DCC-interacting protein 98.7 1.7E-05 5.7E-10 75.7 29.0 195 195-401 28-230 (385)
31 1i4d_A Arfaptin 2, partner of 98.6 0.00015 5.1E-09 62.5 27.6 201 186-397 5-206 (224)
32 4h8s_A DCC-interacting protein 98.2 0.0018 6E-08 62.1 28.9 193 193-397 42-249 (407)
33 2v0o_A FCHO2, FCH domain only 97.7 0.028 9.6E-07 50.5 29.0 77 324-400 171-247 (276)
34 2efl_A Formin-binding protein 97.5 0.053 1.8E-06 49.4 29.8 159 242-400 73-264 (305)
35 3m3w_A Pacsin3, protein kinase 97.4 0.072 2.5E-06 49.0 26.0 76 325-400 199-275 (320)
36 3plt_A Sphingolipid long chain 97.4 0.047 1.6E-06 46.8 27.1 140 202-356 23-164 (234)
37 2ykt_A Brain-specific angiogen 97.4 0.057 1.9E-06 47.7 28.7 188 199-394 26-226 (253)
38 3haj_A Human pacsin2 F-BAR; pa 97.3 0.17 5.7E-06 49.5 29.4 161 219-379 53-255 (486)
39 2efk_A CDC42-interacting prote 97.3 0.11 3.7E-06 47.2 31.2 159 242-400 66-257 (301)
40 3aco_A Pacsin2, protein kinase 97.1 0.19 6.5E-06 46.8 27.2 180 219-399 60-283 (350)
41 3i2w_A Syndapin, LD46328P; EFC 97.0 0.18 6E-06 45.6 29.3 77 323-399 184-261 (290)
42 3abh_A Pacsin2, protein kinase 96.9 0.24 8.1E-06 45.3 29.0 180 219-399 60-283 (312)
43 2d1l_A Metastasis suppressor p 96.9 0.19 6.5E-06 44.1 29.1 186 202-394 31-237 (253)
44 4dyl_A Tyrosine-protein kinase 96.9 0.32 1.1E-05 46.3 26.6 77 323-399 164-255 (406)
45 3g9g_A Suppressor of yeast pro 96.4 0.49 1.7E-05 42.4 23.0 136 242-400 119-254 (287)
46 2x3v_A Syndapin I, protein kin 96.2 0.72 2.5E-05 42.5 31.6 138 241-378 75-252 (337)
47 1uru_A Amphiphysin; endocytosi 90.4 8.1 0.00028 33.3 23.5 42 187-228 43-84 (244)
48 3ok8_A Brain-specific angiogen 86.3 15 0.0005 31.3 30.0 119 197-318 22-146 (222)
49 3aco_A Pacsin2, protein kinase 84.8 23 0.0008 32.3 23.7 23 330-352 192-214 (350)
50 3caz_A BAR protein; thermo-aci 84.6 15 0.00052 30.0 27.0 116 267-397 98-216 (294)
51 3plt_A Sphingolipid long chain 83.0 21 0.00073 30.5 22.3 155 206-388 20-182 (234)
52 2ykt_A Brain-specific angiogen 81.8 26 0.00088 30.6 27.2 53 187-239 28-86 (253)
53 2v0o_A FCHO2, FCH domain only 80.4 29 0.00099 30.3 23.9 63 330-393 163-225 (276)
54 1i4d_A Arfaptin 2, partner of 72.2 45 0.0015 28.4 22.0 44 188-231 14-57 (224)
55 3mq7_A Bone marrow stromal ant 71.7 29 0.00098 25.9 10.3 46 305-350 53-98 (121)
56 1x79_B RAB GTPase binding effe 70.5 31 0.0011 25.8 9.1 42 324-365 46-87 (112)
57 2lf0_A Uncharacterized protein 70.4 19 0.00064 27.0 7.1 49 298-346 10-59 (123)
58 2fic_A Bridging integrator 1; 66.3 63 0.0021 27.7 24.6 30 198-227 55-84 (251)
59 3iv1_A Tumor susceptibility ge 64.3 33 0.0011 23.8 8.8 14 282-295 4-17 (78)
60 2lw1_A ABC transporter ATP-bin 63.4 37 0.0013 24.1 8.3 51 299-349 23-82 (89)
61 4avm_A Bridging integrator 2; 62.2 75 0.0026 27.2 21.7 43 187-229 39-81 (237)
62 3nmd_A CGMP dependent protein 61.7 33 0.0011 23.4 6.4 26 323-348 40-65 (72)
63 3oja_B Anopheles plasmodium-re 59.8 97 0.0033 30.4 12.6 158 201-363 427-584 (597)
64 3i2w_A Syndapin, LD46328P; EFC 59.7 90 0.0031 27.3 21.7 153 241-394 63-240 (290)
65 3tul_A Cell invasion protein S 59.7 60 0.0021 25.3 14.1 81 268-349 46-126 (158)
66 2q12_A DIP13 alpha, DCC-intera 55.9 1E+02 0.0034 26.7 22.1 48 192-239 18-65 (265)
67 3vkg_A Dynein heavy chain, cyt 54.0 3.7E+02 0.013 32.6 28.5 73 323-396 2042-2138(3245)
68 2dq0_A Seryl-tRNA synthetase; 53.3 1.3E+02 0.0045 28.5 11.7 70 283-353 30-99 (455)
69 3abh_A Pacsin2, protein kinase 52.9 1.2E+02 0.0042 26.8 23.9 66 327-393 196-261 (312)
70 3lay_A Zinc resistance-associa 52.8 65 0.0022 26.2 8.1 42 304-345 91-135 (175)
71 3ghg_A Fibrinogen alpha chain; 52.2 1.4E+02 0.0047 28.7 11.1 28 209-236 50-77 (562)
72 3mq9_A Bone marrow stromal ant 51.6 1.6E+02 0.0055 27.8 12.6 18 64-81 139-156 (471)
73 3qf7_D MRE11; ABC-ATPase, ATPa 51.1 14 0.00048 22.0 2.8 34 367-400 8-41 (50)
74 3qne_A Seryl-tRNA synthetase, 50.6 1.3E+02 0.0046 28.8 11.2 66 285-351 34-99 (485)
75 2d1l_A Metastasis suppressor p 47.7 1.4E+02 0.0047 25.9 25.6 53 187-239 30-89 (253)
76 1wle_A Seryl-tRNA synthetase; 45.7 1.3E+02 0.0043 29.1 10.3 27 325-351 118-144 (501)
77 2efl_A Formin-binding protein 45.6 1.5E+02 0.0053 25.8 27.7 49 270-318 93-143 (305)
78 2wq1_A General control protein 44.7 41 0.0014 18.9 4.9 22 325-346 2-23 (33)
79 1kd8_B GABH BLL, GCN4 acid bas 41.6 49 0.0017 18.9 4.9 24 324-347 2-25 (36)
80 4ani_A Protein GRPE; chaperone 39.1 1.2E+02 0.0042 25.5 7.9 39 325-363 68-106 (213)
81 2q13_A DCC-interacting protein 39.1 2.3E+02 0.0078 25.9 21.4 47 192-238 18-64 (385)
82 2z5i_A TM, general control pro 38.3 73 0.0025 20.1 4.9 29 325-353 14-42 (52)
83 2dq3_A Seryl-tRNA synthetase; 37.5 1.3E+02 0.0044 28.3 8.8 67 283-349 29-101 (425)
84 3vkg_A Dynein heavy chain, cyt 37.3 6.5E+02 0.022 30.6 32.7 27 24-50 1648-1679(3245)
85 3ogl_Q JAZ1 incomplete degron 37.3 22 0.00076 17.8 1.8 12 108-119 5-16 (21)
86 1gmj_A ATPase inhibitor; coile 37.2 1.1E+02 0.0036 21.5 7.6 10 289-298 21-30 (84)
87 2xus_A Breast cancer metastasi 36.6 77 0.0026 19.8 5.5 23 292-314 7-29 (49)
88 2l5g_B Putative uncharacterize 36.2 70 0.0024 19.1 5.0 26 324-349 10-35 (42)
89 1kd8_A GABH AIV, GCN4 acid bas 35.4 64 0.0022 18.5 4.4 24 325-348 3-26 (36)
90 3ghg_A Fibrinogen alpha chain; 34.2 3.2E+02 0.011 26.2 17.6 24 275-298 125-148 (562)
91 2ve7_C Kinetochore protein NUF 33.3 73 0.0025 27.6 5.9 11 111-121 52-62 (250)
92 4akv_A Sorting nexin-33; trans 32.6 3E+02 0.01 25.3 25.3 53 187-239 180-233 (386)
93 2lkw_A Membrane fusion protein 32.3 32 0.0011 17.4 2.0 14 17-30 10-23 (26)
94 1jcd_A Major outer membrane li 31.4 1E+02 0.0034 19.5 6.7 13 328-340 23-35 (52)
95 3c3f_A Alpha/beta peptide with 31.4 73 0.0025 17.9 4.9 25 324-348 2-26 (34)
96 4a3a_A Amphiphysin; structural 31.3 2.5E+02 0.0084 24.0 25.0 43 187-229 44-86 (243)
97 1ic2_A Tropomyosin alpha chain 31.3 1.3E+02 0.0044 20.8 10.6 22 328-349 39-60 (81)
98 1g6u_A Domain swapped dimer; d 30.9 82 0.0028 18.4 5.8 28 319-346 16-43 (48)
99 1ses_A Seryl-tRNA synthetase; 30.8 2.4E+02 0.0083 26.3 9.5 65 284-352 28-93 (421)
100 2yy0_A C-MYC-binding protein; 30.5 1E+02 0.0036 19.4 4.9 31 322-352 18-48 (53)
101 4h8s_A DCC-interacting protein 30.3 3.3E+02 0.011 25.1 26.4 39 188-226 51-89 (407)
102 2akf_A Coronin-1A; coiled coil 29.8 71 0.0024 17.3 3.9 24 328-351 4-27 (32)
103 2bni_A General control protein 29.3 81 0.0028 17.8 3.6 23 325-347 3-25 (34)
104 1i84_S Smooth muscle myosin he 28.1 3.4E+02 0.012 29.3 11.2 13 61-73 719-731 (1184)
105 1t3j_A Mitofusin 1; coiled coi 27.1 1.8E+02 0.0061 21.0 6.6 11 353-363 83-93 (96)
106 1deq_A Fibrinogen (alpha chain 27.0 3.7E+02 0.013 24.6 13.4 26 213-238 57-82 (390)
107 3ogk_Q JAZ1 incomplete degron 26.9 22 0.00075 18.1 0.8 9 110-118 2-10 (22)
108 1i84_S Smooth muscle myosin he 26.0 4E+02 0.014 28.7 11.3 15 193-207 862-876 (1184)
109 3hnw_A Uncharacterized protein 25.8 2.3E+02 0.0079 21.9 10.9 7 331-337 111-117 (138)
110 1s28_A ORF1; type III chaperon 25.7 40 0.0014 25.7 2.4 23 69-94 5-27 (132)
111 3mq9_A Bone marrow stromal ant 25.6 4.2E+02 0.014 24.8 18.6 25 323-347 443-467 (471)
112 3mq7_A Bone marrow stromal ant 25.3 2.1E+02 0.0073 21.3 10.4 28 323-350 78-105 (121)
113 2kx2_A MTH1821, putative uncha 24.8 39 0.0013 23.9 2.0 79 25-122 4-95 (96)
114 2dfs_A Myosin-5A; myosin-V, in 24.8 6.6E+02 0.022 26.8 16.3 166 204-374 909-1074(1080)
115 3m48_A General control protein 23.9 1E+02 0.0036 17.3 3.7 11 327-337 4-14 (33)
116 3vem_A Helicase protein MOM1; 23.2 2.3E+02 0.008 21.0 9.1 22 335-356 66-87 (115)
117 1uo4_A General control protein 23.2 1.1E+02 0.0038 17.3 3.9 20 326-345 4-23 (34)
118 3dyt_A Sorting nexin-9; 3-heli 22.6 4.4E+02 0.015 23.9 24.3 52 187-238 160-212 (366)
119 3c3g_A Alpha/beta peptide with 22.5 1.1E+02 0.0038 17.1 4.9 20 326-345 3-22 (33)
120 4emc_A Monopolin complex subun 21.1 3.4E+02 0.012 22.2 7.2 18 284-301 9-26 (190)
121 2d4y_A HAP1, flagellar HOOK-as 21.0 5.2E+02 0.018 24.3 15.4 20 219-238 40-59 (463)
122 2v4h_A NF-kappa-B essential mo 21.0 2.6E+02 0.0087 20.7 7.6 12 334-345 66-77 (110)
123 4hpq_C ATG17, KLTH0D15642P; au 20.7 5.2E+02 0.018 24.1 21.6 144 155-318 227-370 (413)
124 4fla_A Regulation of nuclear P 20.3 3.2E+02 0.011 21.5 15.0 64 330-398 68-134 (152)
No 1
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=100.00 E-value=5.5e-53 Score=402.01 Aligned_cols=337 Identities=21% Similarity=0.364 Sum_probs=272.3
Q ss_pred CCCcEEEEEcCceEeC--CCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCC-ccCCCCCCCccccc
Q 043025 22 SQPYLSVSVTDPVKLG--NGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG-IFIPPLPEKSAVEK 98 (403)
Q Consensus 22 ~~~~~~v~V~~~~~~~--~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~-~~iP~lP~k~~~~~ 98 (403)
+.+.+.|.|+||++++ +|+++|++|.|.+++ ..|.|+||||||.|||+.|...||+ ++|||||+|..++
T Consensus 17 ~~~~~~i~V~dp~k~~~~~g~~~y~~Y~I~~~~-------~~~~V~RRYsdF~~L~~~L~~~~p~~~~iP~lP~K~~~g- 88 (366)
T 3dyt_A 17 PTSTFDCVVADPRKGSKMYGLKSYIEYQLTPTN-------TNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVTG- 88 (366)
T ss_dssp CSSCCCEEEECGGGSSSCCCCCSSCEEEEEETT-------CSCCEEEEHHHHHHHHHHHHHHHTTTSCCCCCC-------
T ss_pred CCCCeEEEEcCceeecCCCCCcCeEEEEEEEec-------CcEEEEeeHHHHHHHHHHHHHhCCCcCcCCCCcCCcccC-
Confidence 3457899999999997 788899999999864 5799999999999999999999999 9999999999998
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccChhh-HHHhh-hccCCCCCCCcchHHHHHHhhhhhhhhhh
Q 043025 99 FRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEET-MERLR-SQDTGYFKKKPADLMQIFKDVQSKVSDVV 176 (403)
Q Consensus 99 ~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (403)
+++++||++||.+|+.||++|+.||.|++|+.|+.||+.+++. |+... ..++. +....+||+.+..+.
T Consensus 89 -~~~~~fie~Rr~~Le~fL~~i~~~p~l~~~~~~~~FL~~~~~~~w~~~~r~~~~~-----~~~g~~~~~~~~~~~---- 158 (366)
T 3dyt_A 89 -RFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAERD-----ELAGVMIFSTMEPEA---- 158 (366)
T ss_dssp ------CHHHHHHHHHHHHHHHHTCTTGGGSHHHHHHHHCSSHHHHHHHHHHHHTC-----CCCGGGGGGGEEESS----
T ss_pred -CCCHHHHHHHHHHHHHHHHHHhCCHhhhCCcHHHHhhCCCchhhHHHHhhhhccC-----cccchHHHHHhcCCC----
Confidence 8999999999999999999999999999999999999997664 87432 22221 111123444433211
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhh-------hhhhHHHHHH
Q 043025 177 LGKEKPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKR-HRELGESLSDFGKAAKLLGAC-------EGDALGKAFS 248 (403)
Q Consensus 177 ~~~~~~~~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~-~~~l~~~~~~l~~~~~~l~~~-------e~~~L~~~~~ 248 (403)
......+.+++|..++.|+..|+.+++.+.+.+.+++++ ...++.++.++|.+|..|+.+ +++.|++++.
T Consensus 159 --~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~L~~al~ 236 (366)
T 3dyt_A 159 --PDLDLVEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNDAIT 236 (366)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCCGGGHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHH
Confidence 111233457899999999999999999999999999987 477888888888888888863 3668999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHH
Q 043025 249 ELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEA 328 (403)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l 328 (403)
.+|++++.++...++++..+...+.|+|++|.+++.++|++|.+|..++..+.++.+.+ ..+|+..
T Consensus 237 ~l~~~~~~i~~l~~~qa~~d~~~l~E~L~~Y~~~l~avKd~l~~r~~aL~k~~e~~kl~-------------~~~K~~~- 302 (366)
T 3dyt_A 237 EAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKVKESDKLV-------------ATSKITL- 302 (366)
T ss_dssp HHHHHHHHHHHHHHHSGGGTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTHHHHH-------------HTTSSCH-
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hccCcch-
Confidence 99999999999999999999999999999999999999999999999888777763211 1122221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043025 329 EIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 329 ~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~ 400 (403)
.+++.++.+|+.|+..++.|+.+|+.+|..||+.+|.+|++.||+||++.++.|+.+++.++.+
T Consensus 303 --------~~~~~~~~r~e~is~~~~~El~rF~~~r~~Dfk~~l~~yl~~qi~~~k~~~~~w~~~l~~~~~~ 366 (366)
T 3dyt_A 303 --------QDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALSRFPVM 366 (366)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 2456778899999999999999999999999999999999999999999999999999998753
No 2
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=100.00 E-value=1.3e-52 Score=400.70 Aligned_cols=334 Identities=23% Similarity=0.385 Sum_probs=264.9
Q ss_pred CcEEEEEcCceEeC--CCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCC
Q 043025 24 PYLSVSVTDPVKLG--NGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRF 101 (403)
Q Consensus 24 ~~~~v~V~~~~~~~--~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~ 101 (403)
..+.|+|+||++++ +|+++|++|.|.+++ ..|.|+||||||.|||+.|...||+++|||||+|..++ ++
T Consensus 40 ~~~~i~V~dp~k~~~~~g~~~y~~Y~I~~~~-------~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~g--~~ 110 (386)
T 4akv_A 40 HPFACSVEDPTKQTKFKGIKSYISYKLTPTH-------AASPVYRRYKHFDWLYNRLLHKFTVISVPHLPEKQATG--RF 110 (386)
T ss_dssp SCCCEEEECC------------CCEEEEETT-------SSSCEEECHHHHHHHHHHHHHHCSSSCCCCCCCCC-------
T ss_pred CCeEEEEcCceEecCCCCCcCeEEEEEEEEe-------CCeEEEcCHHHHHHHHHHHHHhCCCCCCCCCCCCcccC--CC
Confidence 45799999999998 788999999999864 46999999999999999999999999999999999998 89
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccChhh-HHHh-hhccCCCCCCCcchHHHHHHhhhhhhhhhhcCC
Q 043025 102 SAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEET-MERL-RSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGK 179 (403)
Q Consensus 102 ~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (403)
+++||++||.+|+.||++|+.||.|++|+.|+.||+.+++. |+.. ++..+.. ....++++++..+. .
T Consensus 111 ~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~~~~~w~~~~r~~~~~~-----~~g~~~~~~~~~~~------~ 179 (386)
T 4akv_A 111 EEDFIEKRKRRLILWMDHMTSHPVLSQYEGFQHFLSCLDDKQWKMGKRRAEKDE-----MVGASFLLTFQIPT------E 179 (386)
T ss_dssp -CCTTTHHHHHHHHHHHHHHTCTTGGGCHHHHHHHSCCCSHHHHHHHHHHHTCS-----CCGGGGGGTSBCCS------C
T ss_pred CHHHHHHHHHHHHHHHHHHhCCHhhhCCcHHHHHhCCCChhhHHHhhhhccCCC-----ccchHHHHHhcCCc------c
Confidence 99999999999999999999999999999999999987654 8743 2222211 11112333322111 1
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh-------hhhhhHHHHHHHHH
Q 043025 180 EKPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRH-RELGESLSDFGKAAKLLGA-------CEGDALGKAFSELG 251 (403)
Q Consensus 180 ~~~~~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~-~~l~~~~~~l~~~~~~l~~-------~e~~~L~~~~~~~~ 251 (403)
.....+.++.|..++.|+..++..++.+.+.+++++++. ..++.++.++|.++..|+. .+++.|++++..+|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~r~~~~~~~e~~~l~~~l~~l~~~~~~~~~~~~~~Ls~aL~~l~ 259 (386)
T 4akv_A 180 HQDLQDVEDRVDTFKAFSKKMDDSVLQLSTVASELVRKHVGGFRKEFQKLGSAFQAISHSFQMDPPFCSEALNSAISHTG 259 (386)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSSGGGSCHHHHHHHHHHH
T ss_pred ccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 112345678999999999999999999999999998884 5667777777777777776 45678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHH
Q 043025 252 MKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIE 331 (403)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~ 331 (403)
++++.++....+++..+...+.|+|++|.+++.++|++|.+|..+++.+.++.+.+ . .++.+
T Consensus 260 ~~~e~i~~l~~~Qa~~d~~~L~E~L~~Y~~ll~s~Kdll~~R~~aL~k~~ea~kl~-------~---~~K~~-------- 321 (386)
T 4akv_A 260 RTYEAIGEMFAEQPKNDLFQMLDTLSLYQGLLSNFPDIIHLQKGAFAKVKESQRMS-------D---EGRMV-------- 321 (386)
T ss_dssp HHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H---TTSSC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H---hCCcc--------
Confidence 99999999999999999999999999999999999999999999888887774211 0 11222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 332 YKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEA 399 (403)
Q Consensus 332 i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~ 399 (403)
..+++.+..+|+.|+..++.|+.+|+.+|..||+.+|.+|++.||.||++.++.|+.+++.++.
T Consensus 322 ----~~~~~e~~~r~e~IS~~~~~El~rF~~~Rv~Dfk~~l~eyle~qi~~~~~~~~~le~~l~~f~~ 385 (386)
T 4akv_A 322 ----QDEADGIRRRCRVVGFALQAEMNHFHQRRELDFKHMMQNYLRQQILFYQRVGQQLEKTLRMYDN 385 (386)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 1245567899999999999999999999999999999999999999999999999999999875
No 3
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens}
Probab=99.97 E-value=3.7e-31 Score=215.83 Aligned_cols=120 Identities=43% Similarity=0.704 Sum_probs=109.7
Q ss_pred CCCcEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccc--c
Q 043025 22 SQPYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEK--F 99 (403)
Q Consensus 22 ~~~~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~--~ 99 (403)
+...+.|.|+||+++++|+++|++|.|.++++.|.|.+..|.|+||||||.|||+.|...||++++||||+|..+++ .
T Consensus 5 d~~~l~i~V~dp~~~~~g~~~yv~Y~I~v~t~~~~f~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~~~~~~ 84 (138)
T 3iq2_A 5 DLKDLFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVE 84 (138)
T ss_dssp CCCCCEEEEEEEEEEECSSCEEEEEEEEEESCSSSSSCCEEEEEEEHHHHHHHHHHHHHHCTTSCCCCCCCCC----CCG
T ss_pred ccceEEEEECCCEEecCCCCCEEEEEEEEEECCCCcCCCeEEEEcChHHHHHHHHHHHHHCcCcccCCCCcchhhccccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999998752 2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccChh
Q 043025 100 RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEE 141 (403)
Q Consensus 100 ~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~ 141 (403)
+++++||++||++||.||++|+.||.|++|+.|+.||+.++.
T Consensus 85 ~~~~~fie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~~~ 126 (138)
T 3iq2_A 85 RFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQAW 126 (138)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHSTTGGGCHHHHHHHHTTCB
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCHhhhcChHHHhhhCCCCC
Confidence 569999999999999999999999999999999999998864
No 4
>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A*
Probab=99.96 E-value=5.5e-30 Score=214.75 Aligned_cols=118 Identities=36% Similarity=0.667 Sum_probs=110.6
Q ss_pred CCCcEEEEEcCceEe---C-CCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhc-----CCccCCCCCC
Q 043025 22 SQPYLSVSVTDPVKL---G-NGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY-----KGIFIPPLPE 92 (403)
Q Consensus 22 ~~~~~~v~V~~~~~~---~-~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~-----p~~~iP~lP~ 92 (403)
+.+++.|.|+||+++ + +|.++|++|.|.++++.|.|.+..|.|+||||||.|||+.|...| |++.+||||+
T Consensus 32 p~~~l~i~V~dp~~~~~~g~~~~~~yv~Y~I~v~~~~~~f~~~~~~V~RRYsdF~~Lh~~L~~~~~~~~~p~~~iP~lP~ 111 (162)
T 1ocs_A 32 PENFLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPG 111 (162)
T ss_dssp SSCCEEEEEEEEEEECCCSTTSCCCEEEEEEEEEECCTTCSCSEEEEEEEHHHHHHHHHHHHHHHHHTTCTTCCCCCCTT
T ss_pred CCCeEEEEEeCCEEeeccCCCCCCCeEEEEEEEEECCCCCCcceeEEEeeHHHHHHHHHHHHHHhccccCCCccCCCCCC
Confidence 556899999999999 7 788999999999999999999999999999999999999999999 9999999999
Q ss_pred CccccccCCCHHHHHHHHHHHHHHHHHHhcCccccC-ChhhhcccccCh
Q 043025 93 KSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQ-SEDLKTFLQADE 140 (403)
Q Consensus 93 k~~~~~~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~-~~~~~~FL~~~~ 140 (403)
|..++. +++++||++||.+||.||++|+.||.|+. ++.|+.||+.++
T Consensus 112 K~~~~~-~~~~~fie~Rr~~Le~fL~~l~~~p~l~~~s~~l~~FL~~~~ 159 (162)
T 1ocs_A 112 KILLSN-RFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAEK 159 (162)
T ss_dssp CCCSSC-TTSHHHHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHCSS
T ss_pred Cccccc-CCCHHHHHHHHHHHHHHHHHHHcCHHhhhCCHHHHHhCCCcc
Confidence 999841 68999999999999999999999999998 999999999874
No 5
>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.96 E-value=4.7e-30 Score=212.16 Aligned_cols=119 Identities=39% Similarity=0.685 Sum_probs=109.9
Q ss_pred CCCcEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccc---
Q 043025 22 SQPYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEK--- 98 (403)
Q Consensus 22 ~~~~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~--- 98 (403)
+.+++.|.|+||.++++|.++|++|.|.++++.|.|....|.|+||||||.|||+.|... |++++||||+|+.++.
T Consensus 7 ~~~~l~i~V~dp~~~~~g~~~yv~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~iP~lP~K~~~~~~~~ 85 (146)
T 2csk_A 7 GSNFLEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERD-SKIVVPPLPGKALKRQLPF 85 (146)
T ss_dssp CSCCCEEEEEEEEEESSSSSCEEEEEEEEECCCSSSSCSEEEEEECHHHHHHHHHHHSSS-SSCCCCCCSCCCCCCSSTT
T ss_pred CCCcEEEEEcCceEecCCCCCEEEEEEEEEECCCCcCcCceEEEecHHHHHHHHHHHHhc-cCCcCCCCCCCchhhcccc
Confidence 446899999999999999999999999999998989889999999999999999999875 8999999999998731
Q ss_pred ----cCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccChh
Q 043025 99 ----FRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEE 141 (403)
Q Consensus 99 ----~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~ 141 (403)
.+++++||++||++||.||++|+.||.|++++.|+.||+.++.
T Consensus 86 ~~~~g~~~~~fie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~~ 132 (146)
T 2csk_A 86 RGDEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQEEAI 132 (146)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHHHHHHHCHHHHHCHHHHHHTTCSSC
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHcChhhccCcHHHhhcCCCch
Confidence 1789999999999999999999999999999999999998864
No 6
>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol, PI(4,5)P2, cell adhesion, protein transport; 1.47A {Rattus norvegicus} PDB: 3hpb_A
Probab=99.96 E-value=1.4e-29 Score=209.91 Aligned_cols=117 Identities=33% Similarity=0.678 Sum_probs=104.3
Q ss_pred CCCcEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHh--hcCCccCCCCCCCccccc-
Q 043025 22 SQPYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFE--KYKGIFIPPLPEKSAVEK- 98 (403)
Q Consensus 22 ~~~~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~--~~p~~~iP~lP~k~~~~~- 98 (403)
+.+++.|.|+||.++++ ||+|.|.+++++|.|....+.|+||||||.|||+.|.. .||+++|||||+|..++.
T Consensus 8 ~~~~l~i~V~dp~~~~~----~v~Y~I~t~t~~p~f~~~~~~V~RRysdF~~L~~~L~~~~~~p~~iiPplP~K~~~~~~ 83 (161)
T 3hpc_X 8 VDPSLQIDIPDALSERD----KVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDFDGP 83 (161)
T ss_dssp CSCSEEEEEEEEEEETT----EEEEEEEEEECCTTSSSSEEEEEECHHHHHHHHHHHHHCGGGTTSCCCCCCCCCCCHHH
T ss_pred CCCeEEEEECCCeEecC----CEEEEEEEEeCCcccCCCcceEEecHHHHHHHHHHHHhhccCCccccCCCCCcccccch
Confidence 45689999999999975 89999999999999999999999999999999999998 899999999999998731
Q ss_pred -----------cC------------CCHHHHHHHH---HHHHHHHHHHhcCccccCChhhhcccccChhh
Q 043025 99 -----------FR------------FSAEFIEMRR---QGLDLFVNRIASHPELQQSEDLKTFLQADEET 142 (403)
Q Consensus 99 -----------~~------------~~~~~i~~R~---~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~~ 142 (403)
.+ ++++||+.|| .+||.||++|+.||+|+.|+.|+.||+.+++.
T Consensus 84 ~~K~~~~g~~~~~~~~e~~~~~r~~~~~efie~Rrkrr~~Le~FL~ri~~HP~L~~d~~~~~FL~~~~dl 153 (161)
T 3hpc_X 84 REKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDL 153 (161)
T ss_dssp HHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGCHHHHHHHHCCSCS
T ss_pred hhhhhcccccccccchhHhhhhcccccHHHHHHHHHHHHHHHHHHHHHHcCCCcccCcHHHhhcCCCccc
Confidence 02 3568999754 45999999999999999999999999998754
No 7
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens}
Probab=99.95 E-value=1.6e-29 Score=205.02 Aligned_cols=114 Identities=42% Similarity=0.774 Sum_probs=106.2
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcC--CccCCCCCCCcccccc----
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYK--GIFIPPLPEKSAVEKF---- 99 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p--~~~iP~lP~k~~~~~~---- 99 (403)
+.|.|+||+++++|+++|++|.|.++++.|+|....|.|+||||||.|||+.|...|| |+++||||+|..++..
T Consensus 4 l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iP~lP~K~~~~~~~~~~ 83 (128)
T 2i4k_A 4 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKV 83 (128)
T ss_dssp CCCCBCCCCBCCCSSCCCBCCCBCCCCCSSSSCSSCCCBCCCHHHHHHHHHHHHHTCSSSSCCCCSSSSCCSSSSSSCCC
T ss_pred EEEEECCceEecCCCcCEEEEEEEEEEcCCCCCCCeEEEEeEhHHHHHHHHHHHHhCCCCCcCcCCCCCCcccchhhhhh
Confidence 6899999999999999999999999998899989999999999999999999999995 5899999999998631
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 100 ----RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 100 ----~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
+++++||++||.+||.||+.|+.||.|++|+.|+.||+.+
T Consensus 84 ~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~ 127 (128)
T 2i4k_A 84 GKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKE 127 (128)
T ss_dssp CSCCCSSTTHHHHHHHHHHHHHHHHHHCHHHHCSHHHHTTTTCC
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhhCCC
Confidence 3589999999999999999999999999999999999876
No 8
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
Probab=99.94 E-value=1.7e-27 Score=188.33 Aligned_cols=106 Identities=23% Similarity=0.436 Sum_probs=95.1
Q ss_pred cEEEEEcCceEeCC--CCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCC
Q 043025 25 YLSVSVTDPVKLGN--GVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFS 102 (403)
Q Consensus 25 ~~~v~V~~~~~~~~--~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~ 102 (403)
.+.|.|+++...++ |+++|++|.|.+. ..|.|+||||||.|||+.|...||++.+||||+|..++ ++
T Consensus 3 ~l~v~Ip~~~~~~~~~g~~~y~~Y~I~v~--------~~~~V~RRYsdF~~L~~~L~~~~~~~~~P~lP~K~~~~---~~ 71 (115)
T 3lui_A 3 AMHFSIPETESRSGDSGGSAYVAYNIHVN--------GVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFS---LT 71 (115)
T ss_dssp --CEEEEEEEEEC-----CCEEEEEEEET--------TEEEEEEEHHHHHHHHHHHHHHHCSTTSCCCCCCCSSC---CC
T ss_pred cEEEEECCeEEecCCCCCCCEEEEEEEEC--------CeEEEEecHHHHHHHHHHHHHHcCCCcCCCCCCCcccC---CC
Confidence 56899999999874 6689999999873 47999999999999999999999999999999999985 79
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccChh
Q 043025 103 AEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEE 141 (403)
Q Consensus 103 ~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~ 141 (403)
++||++||.+||.||+.|+.||.|++|+.|+.||+.+..
T Consensus 72 ~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~~~ 110 (115)
T 3lui_A 72 PAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQ 110 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcChhhhcChHHHHHHCcCHH
Confidence 999999999999999999999999999999999998763
No 9
>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A
Probab=99.92 E-value=2.1e-25 Score=185.62 Aligned_cols=112 Identities=28% Similarity=0.508 Sum_probs=101.6
Q ss_pred CcEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCH
Q 043025 24 PYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSA 103 (403)
Q Consensus 24 ~~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~ 103 (403)
+.+.|+|+++.++++|.++|++|.|.+++ .+..|.|+||||||.|||+.|...||++.+ |||+|.+++. ++++
T Consensus 6 ~~~~v~I~~~~~~~~~~~~~~~Y~I~v~~-----~~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~-plP~K~~~g~-~~~~ 78 (154)
T 1xte_A 6 SCPSVSIPSSDEHREKKKRFTVYKVLVSV-----GRSEWFVFRRYAEFDKLYNSLKKQFPAMAL-KIPAKRIFGD-NFDP 78 (154)
T ss_dssp CCCEEEEEEEEEEEETTEEEEEEEEEEEE-----TTEEEEEEEEHHHHHHHHHHHHHHCGGGCC-CCCCSCCSSC-TTCH
T ss_pred CCCEEEECCcEEEecCCCCEEEEEEEEEE-----CCEEEEEEeeHHHHHHHHHHHHHHCCCCcc-cCCCccccCC-CCCH
Confidence 45699999999998888899999999987 346899999999999999999999999855 6999999872 5899
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccCChhhhcccccChhh
Q 043025 104 EFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEET 142 (403)
Q Consensus 104 ~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~~ 142 (403)
+||++||.+|+.||+.|+.||.|+.++.|+.||+.+...
T Consensus 79 ~~ie~Rr~~Le~yL~~l~~~p~l~~s~~l~~FL~~~~~~ 117 (154)
T 1xte_A 79 DFIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQMDSPR 117 (154)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHTSHHHHHHTTTTCGG
T ss_pred HHHHHHHHHHHHHHHHHHcChhhccChHHHHHhCCCCCc
Confidence 999999999999999999999999999999999987654
No 10
>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1
Probab=99.92 E-value=2.3e-25 Score=176.84 Aligned_cols=104 Identities=32% Similarity=0.445 Sum_probs=92.7
Q ss_pred CcEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCC-CCCCCccc-----c
Q 043025 24 PYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIP-PLPEKSAV-----E 97 (403)
Q Consensus 24 ~~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP-~lP~k~~~-----~ 97 (403)
+.+.|+|+|+.+ .++|++|.|.+ ..|.|+||||||.|||+.|...+| +.+| |||+|..+ +
T Consensus 4 ~~~~v~I~~~~~----~~~~~~Y~I~v---------~~~~V~RRYsdF~~L~~~L~~~~~-~~~P~~lP~K~~~~~~~~~ 69 (117)
T 1kmd_A 4 EKLRIKVDDVKI----NPKYVLYGVST---------PNKRLYKRYSEFWKLKTRLERDVG-STIPYDFPEKPGVLDRRWQ 69 (117)
T ss_dssp CCCCCEEEEEEE----CSSCEEEEEEC---------SSCCEEECHHHHHHHHHHHHHHHC-SCCCCCCCCCCCSSCSTTC
T ss_pred CCEEEEECCcee----cCCEEEEEEEE---------ceEEEEechHHHHHHHHHHHHHcC-ccCCCCCCCCCEecccccc
Confidence 468999999998 25899999988 379999999999999999999998 7899 99999986 1
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHhcCccc---cCChhhhcccccChh
Q 043025 98 KFRFSAEFIEMRRQGLDLFVNRIASHPEL---QQSEDLKTFLQADEE 141 (403)
Q Consensus 98 ~~~~~~~~i~~R~~~L~~fl~~~~~~~~l---~~~~~~~~FL~~~~~ 141 (403)
..+++++||++||.+||.||+.|+.||.+ +.++.|+.||+.+.+
T Consensus 70 ~~~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~~~~s~~l~~FL~~~~~ 116 (117)
T 1kmd_A 70 RRYDDPEMIDERRIGLERFLNELYNDRFDSRWRDTKIAQDFLQLSKP 116 (117)
T ss_dssp CCTTCHHHHHHHHTTHHHHHHHHHCCSSCCHHHHSHHHHHHTTCCCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhCcchhhhhcCHHHHHhcCCCCC
Confidence 12789999999999999999999999965 789999999998764
No 11
>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens}
Probab=99.91 E-value=1.2e-24 Score=176.56 Aligned_cols=102 Identities=23% Similarity=0.216 Sum_probs=94.6
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHH
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAE 104 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~ 104 (403)
.+.|+|+++..+++|.++|++|.|.+.++ +..|.|+||||||.|||+.|...||++.+||||+|++++ +++++
T Consensus 5 ~i~VsIp~~~~~~~~~~~~~~Y~I~v~~~-----~~~~~V~RRYsdF~~L~~~L~~~~p~~~~p~lP~K~~~~--~~~~~ 77 (134)
T 2v14_A 5 PIKISIPRYVLCGQGKDAHFEFEVKITVL-----DETWTVFRRYSRFREMHKTLKLKYAELAALEFPPKKLFG--NKDER 77 (134)
T ss_dssp CEEEEEEEEEEESSTTSCEEEEEEEEEET-----TEEEEEEECHHHHHHHHHHHHHHCGGGGGCCCCCCCSSC--TTSHH
T ss_pred CEEEEECcEEEEecCCCCEEEEEEEEEEC-----CeEEEEEeeHHHHHHHHHHHHHHCCCCCCCCCcCCcccc--CCCHH
Confidence 57999999999998889999999999873 578999999999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHHHHHHhcCcc-ccCChhhh
Q 043025 105 FIEMRRQGLDLFVNRIASHPE-LQQSEDLK 133 (403)
Q Consensus 105 ~i~~R~~~L~~fl~~~~~~~~-l~~~~~~~ 133 (403)
||++||.+||.||+.|+.||. +++++.+.
T Consensus 78 ~ie~Rr~~Le~yL~~ll~~~~~l~~sp~~l 107 (134)
T 2v14_A 78 VIAERRSHLEKYLRDFFSVMLQSATSPLHI 107 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTSTTCT
T ss_pred HHHHHHHHHHHHHHHHHhChHhhcCCHHHH
Confidence 999999999999999999996 88888543
No 12
>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens}
Probab=99.90 E-value=1.6e-24 Score=174.57 Aligned_cols=114 Identities=21% Similarity=0.226 Sum_probs=94.2
Q ss_pred CCCCCCCCCcEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCcc
Q 043025 16 SPRSPSSQPYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSA 95 (403)
Q Consensus 16 ~~~~~~~~~~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~ 95 (403)
+|+.-...|...|.|.+.+. .++|++|.|.+... +..|.|.||||||.|||+.|...+|. .+||||+|+.
T Consensus 13 ~~~~~v~ips~~v~I~~~~~----~~~y~~Y~I~v~~~-----~~~~~V~RRYSdF~~L~~~L~~~~~~-~~p~lP~K~~ 82 (130)
T 3p0c_A 13 LGTENLYFQSMEARVVGSEL----VDTYTVYIIQVTDG-----SHEWTVKHRYSDFHDLHEKLVAERKI-DKNLLPPKKI 82 (130)
T ss_dssp ----CCCEECCEEEEEEEEC----SSSSCEEEEEEECS-----SCEEEEEEEHHHHHHHHHHHHHTTSS-CTTSCCCCCC
T ss_pred CCCceeEeeeeEEEEEeccc----cCCEEEEEEEEEEC-----CeEEEEEehHHHHHHHHHHHHHHcCC-CCCCCCCccc
Confidence 33333344445555554332 36899999999863 57899999999999999999999975 4799999999
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccChh
Q 043025 96 VEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEE 141 (403)
Q Consensus 96 ~~~~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~ 141 (403)
++ +++++||++||.+|+.||+.|+.||.++.++.|+.||+.++.
T Consensus 83 ~g--~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~l~~FL~~~~~ 126 (130)
T 3p0c_A 83 IG--KNSRSLVEKREKDLEVYLQKLLAAFPGVTPRVLAHFLHFHFY 126 (130)
T ss_dssp CS--CCCSCSHHHHHHHHHHHHHHHHHTSCSEECHHHHHHHHSCTT
T ss_pred cc--cCCHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHHHhCCCcc
Confidence 99 789999999999999999999999999999999999998864
No 13
>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1
Probab=99.90 E-value=1.1e-23 Score=173.38 Aligned_cols=112 Identities=24% Similarity=0.391 Sum_probs=99.7
Q ss_pred CcEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcC--------CccCCCCCCCcc
Q 043025 24 PYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYK--------GIFIPPLPEKSA 95 (403)
Q Consensus 24 ~~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p--------~~~iP~lP~k~~ 95 (403)
..+.|+|+++++..+ .+.|++|.|.+... ++..|.|+||||||.+||..|...|| ++++|+||+|..
T Consensus 19 ~~i~v~I~~~e~~~~-~~~~~vY~I~v~~~----~~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~~~~~~~~lP~lP~K~~ 93 (143)
T 1h6h_A 19 VAISANIADIEEKRG-FTSHFVFVIEVKTK----GGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPAKVY 93 (143)
T ss_dssp CEEEEEEEEEEEECS-SSCEEEEEEEEEET----TSCEEEEEEEHHHHHHHHHHHHHHHSTTCSCGGGCCCCCCCCCCCC
T ss_pred CeEEEEEcCccccCC-CCCeEEEEEEEEEc----CCCEEEEEeeHHHHHHHHHHHHHHCccccccCCCCCCcccCCCCcc
Confidence 357899999986654 46899999999864 35789999999999999999999999 457999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHHhcCcc-ccCChhhhcccccChhhH
Q 043025 96 VEKFRFSAEFIEMRRQGLDLFVNRIASHPE-LQQSEDLKTFLQADEETM 143 (403)
Q Consensus 96 ~~~~~~~~~~i~~R~~~L~~fl~~~~~~~~-l~~~~~~~~FL~~~~~~~ 143 (403)
++ + +++|+++||.+|+.||+.|+.+|. ++.|+.|..||+....++
T Consensus 94 ~~--~-~~~~ie~Rr~~Le~yL~~ll~~p~~l~~s~~~~~Fl~~~~~d~ 139 (143)
T 1h6h_A 94 VG--V-KQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSPYDS 139 (143)
T ss_dssp SS--C-HHHHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCCHHHH
T ss_pred cC--c-CHHHHHHHHHHHHHHHHHHHcCCHhhhcCHHHHHHhCCCcccc
Confidence 98 5 899999999999999999999997 999999999999987654
No 14
>4az9_A Sorting nexin-24; protein transport; 1.75A {Homo sapiens}
Probab=99.90 E-value=2.2e-23 Score=167.30 Aligned_cols=118 Identities=20% Similarity=0.318 Sum_probs=93.7
Q ss_pred ccCCCCCCCCCCCCCCcEEEEEcCceEeCCCC-cceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccC
Q 043025 9 SASGSSQSPRSPSSQPYLSVSVTDPVKLGNGV-QAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFI 87 (403)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~v~V~~~~~~~~~~-~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~i 87 (403)
|.+.+.+.-+ .....+.|+|+++...+++. ++|++|.|.+.. .+..|.|+||||||.|||+.|...+| +
T Consensus 8 ssgvd~~~en--~~~~~~~V~Ip~~~~~~~~~~k~y~vY~I~v~~-----~~~~w~V~RRYsdF~~L~~~L~~~~~---~ 77 (129)
T 4az9_A 8 SSGVDLGTEN--LYFQSMEVYIPSFRYEESDLERGYTVFKIEVLM-----NGRKHFVEKRYSEFHALHKKLKKCIK---T 77 (129)
T ss_dssp ------CCTT--CCCCCCEEEEEEEEEECCTTSCCEEEEEEEEEE-----TTEEEEEEEEHHHHHHHHHHHTTTSC---C
T ss_pred cCcccccccc--cccceeEEEECcEEEEecCCCCCEEEEEEEEEE-----CCEEEEEEeeHHHHHHHHHHHHHhCC---C
Confidence 3344444333 22345789999988887654 689999999987 35789999999999999999999887 6
Q ss_pred CCCCCCccccccCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccCh
Q 043025 88 PPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADE 140 (403)
Q Consensus 88 P~lP~k~~~~~~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~ 140 (403)
|+||+|... +++++||++||.+||.||+.|+.+|.+. ++.|..||+.+.
T Consensus 78 p~lP~K~~~---~~~~~~ie~Rr~~Le~yL~~ll~~~~~~-~~~l~~FL~~~~ 126 (129)
T 4az9_A 78 PEIPSKHVR---NWVPKVLEQRRQGLETYLQAVILENEEL-PKLFLDFLNVRH 126 (129)
T ss_dssp CCCCCSCCS---CCCHHHHHHHHHHHHHHHHHHHHHCSSC-CHHHHHHTTC--
T ss_pred CCCCccccc---CCCHHHHHHHHHHHHHHHHHHHhCchhh-CHHHHHHCCCCC
Confidence 899988754 6899999999999999999999999875 789999999864
No 15
>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A
Probab=99.89 E-value=3.3e-23 Score=165.03 Aligned_cols=109 Identities=18% Similarity=0.257 Sum_probs=96.4
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCC-CceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCC-C
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQG-PEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRF-S 102 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~-~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~-~ 102 (403)
.+.|+|.++++..++.+.| +|.|.+... ++ ..|.|.|||+||.+||..|.+.||+..+|+||+|..++ +. +
T Consensus 5 i~~v~V~~~ek~~~~~k~y-~Y~I~v~~~----~~~~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~g--~~~~ 77 (121)
T 2ar5_A 5 IKEVSVFTYHKKYNPDKHY-IYVVRILRE----GQIEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVLG--RTHI 77 (121)
T ss_dssp EEEEEEEEEECCCSSSSCC-EEEEEEEET----TCSSCEEEEEEHHHHHHHHHHHHHHSCGGGSCCCCCCCCSS--SSST
T ss_pred EEEEEECcEEEEecCCCcE-EEEEEEEEC----CCceeEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCeecC--ccCc
Confidence 4689999999988665445 599999874 22 58999999999999999999999999999999999998 44 6
Q ss_pred HHHHHHHHHHHHHHHHHHhcC-ccccCChhhhcccccCh
Q 043025 103 AEFIEMRRQGLDLFVNRIASH-PELQQSEDLKTFLQADE 140 (403)
Q Consensus 103 ~~~i~~R~~~L~~fl~~~~~~-~~l~~~~~~~~FL~~~~ 140 (403)
.+++++||.+|+.||+.|++. |.++.|+.+..|+.+..
T Consensus 78 ~~~~e~Rr~~Le~yL~~ll~~p~~i~~s~~v~~Ff~~~~ 116 (121)
T 2ar5_A 78 KDVAAKRKIELNSYLQSLMNASTDVAECDLVCTFFHGSH 116 (121)
T ss_dssp THHHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHHTSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCchhcCCHHHHHHcCCcc
Confidence 789999999999999999986 69999999999999864
No 16
>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens}
Probab=99.86 E-value=3.2e-22 Score=160.31 Aligned_cols=90 Identities=29% Similarity=0.471 Sum_probs=82.0
Q ss_pred CCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHHHHHHHHHHHHHHH
Q 043025 39 GVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVN 118 (403)
Q Consensus 39 ~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~i~~R~~~L~~fl~ 118 (403)
+.++|++|.|.+..+ +..|.|.||||||.|||+.|...|| +||||+|..+ +++++||++||.+||.||+
T Consensus 28 ~~~~~~~Y~I~v~~~-----~~~~~V~RRYSdF~~Lh~~L~~~~~---iP~lP~K~~~---~~~~~~ie~Rr~~Le~yL~ 96 (128)
T 2ett_A 28 PEKSHMVFRVEVLCS-----GRRHTVPRRYSEFHALHKRIKKLYK---VPDFPSKRLP---NWRTRGLEQRRQGLEAYIQ 96 (128)
T ss_dssp SSCCCCEEEEEEEET-----TEEEEEEEEHHHHHHHHHHHHTTSS---CCCCCCSSCC---CSSSSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEEEEC-----CcEEEEECCHHHHHHHHHHHHHHCC---CCCCCCCccC---CCCHHHHHHHHHHHHHHHH
Confidence 457999999999873 4689999999999999999999987 8999999964 5899999999999999999
Q ss_pred HHhcCccccCChhhhcccccCh
Q 043025 119 RIASHPELQQSEDLKTFLQADE 140 (403)
Q Consensus 119 ~~~~~~~l~~~~~~~~FL~~~~ 140 (403)
.|+.||.+. ++.|..||+.+.
T Consensus 97 ~ll~~p~~~-s~~l~~FL~~~~ 117 (128)
T 2ett_A 97 GILYLNQEV-PKELLEFLRLRH 117 (128)
T ss_dssp HHHHHSSSS-CHHHHHHHTCTT
T ss_pred HHHhCchhc-CHHHHHhcCCcc
Confidence 999999887 799999999875
No 17
>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A
Probab=99.86 E-value=1.9e-21 Score=159.33 Aligned_cols=110 Identities=19% Similarity=0.255 Sum_probs=96.9
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCc---------cCCCCCCCcc
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGI---------FIPPLPEKSA 95 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~---------~iP~lP~k~~ 95 (403)
...|.|.++++.+.+ ++|++|.|.+... ++..|.|.|||+||.+||..|...||.. .+|+||+|..
T Consensus 6 i~~v~V~~~ek~~~~-~~~~~Y~I~V~~~----~~~~~~V~RRYsdF~~Lh~~L~~~fp~~~g~~~~~~~~lP~lP~K~~ 80 (141)
T 1kq6_A 6 IRHIALLGFEKRFVP-SQHYVYMFLVKWQ----DLSEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLPAPKW 80 (141)
T ss_dssp EEEEEEEEEEEECSS-SCEEEEEEEEEET----TCCEEEEEECHHHHHHHHHHHHHHCTTTTTSSCGGGCCSCCCCCCCC
T ss_pred EEEEEEccEEEecCC-CCeEEEEEEEEEc----CCCEEEEEecHHHHHHHHHHHHHHCchhhcccCccccccCCCCCccc
Confidence 457999999998865 4677799999874 4568999999999999999999999975 7999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHHhcCc-cccCChhhhcccccChhhH
Q 043025 96 VEKFRFSAEFIEMRRQGLDLFVNRIASHP-ELQQSEDLKTFLQADEETM 143 (403)
Q Consensus 96 ~~~~~~~~~~i~~R~~~L~~fl~~~~~~~-~l~~~~~~~~FL~~~~~~~ 143 (403)
++ + .+++++||.+|+.||+.|+.+| .++.|+.+..||+....+.
T Consensus 81 ~~--~--~~~~e~Rr~~Le~YL~~Ll~~p~~i~~s~~v~~Fl~~~~~d~ 125 (141)
T 1kq6_A 81 FD--G--QRAAENRQGTLTEYCSTLMSLPTKISRCPHLLDFFKVRPDDL 125 (141)
T ss_dssp CC--S--HHHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCCHHHH
T ss_pred cC--C--HHHHHHHHHHHHHHHHHHHhCCHhhcCChHHHHHhCCCcccc
Confidence 88 3 8999999999999999999987 5899999999999877554
No 18
>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens}
Probab=99.85 E-value=7.6e-22 Score=161.45 Aligned_cols=112 Identities=18% Similarity=0.177 Sum_probs=90.0
Q ss_pred CcEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCC-C
Q 043025 24 PYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRF-S 102 (403)
Q Consensus 24 ~~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~-~ 102 (403)
..+.|.|.++++..++. +|++|.|.+.... ....|.|.|||+||.+||..|...||+..+|+||+|..++ +. +
T Consensus 19 ~i~~v~I~~~ek~~~~~-k~~~Y~I~V~~~~---~~~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~~--~~~~ 92 (140)
T 2iwl_X 19 RIKEVSVFTYHKKYNPD-KHYIYVVRILREG---QIEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVLG--RTHI 92 (140)
T ss_dssp CEEEEEEEEEEECCSSS-SCEEEEEEEEETT---CSSCEEEEECHHHHHHHHHHHHHHSCGGGSCCCCC-----------
T ss_pred eeEEEEECcEEEEecCC-CeEEEEEEEEECC---CceeEEEEeEHHHHHHHHHHHHHHCcCccCCCCCCCeecC--ccch
Confidence 45689999999887654 5667999998741 1147999999999999999999999999999999999998 55 5
Q ss_pred HHHHHHHHHHHHHHHHHHhc-CccccCChhhhcccccChh
Q 043025 103 AEFIEMRRQGLDLFVNRIAS-HPELQQSEDLKTFLQADEE 141 (403)
Q Consensus 103 ~~~i~~R~~~L~~fl~~~~~-~~~l~~~~~~~~FL~~~~~ 141 (403)
.+++++||.+|+.||+.|++ +|.++.|+.+..||+....
T Consensus 93 ~~~~e~Rr~~Le~yL~~Ll~~~~~i~~s~~v~~Fl~~~~~ 132 (140)
T 2iwl_X 93 KDVAAKRKIELNSYLQSLMNASTDVAECDLVCTFFHPLLR 132 (140)
T ss_dssp -CCCCHHHHHHHHHHHHHTTSCHHHHTSHHHHHHHSCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHhhhcCHHHHHHhCCCCC
Confidence 67999999999999999998 6799999999999998653
No 19
>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens}
Probab=99.79 E-value=1.5e-19 Score=148.29 Aligned_cols=113 Identities=14% Similarity=0.198 Sum_probs=97.5
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcC---------CccCCCCCCCccc
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYK---------GIFIPPLPEKSAV 96 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p---------~~~iP~lP~k~~~ 96 (403)
..|.|.++++...+.+.|++|.|.+... ++..|.|+|||+||.+||..|...|| .+++|+||+|.++
T Consensus 9 ~~v~v~~~ek~~~~~~~y~~Y~I~V~~~----d~~~~~V~RRYseF~~Lh~~L~~~FP~e~~~~~~~~r~lP~lP~k~~~ 84 (149)
T 2l73_A 9 PRYPVSVQGAALVQIKRLQTFAFSVRWS----DGSDTFVRRSWDEFRQLKKTLKETFPVEAGLLRRSDRVLPKLLDAPLL 84 (149)
T ss_dssp CCCEEEEEEEEEECCSSSCEEEEEEEET----TSCEEEEEEEHHHHHHHHHHHHHHCGGGGSSSCSSCCSSCCCCCCSCC
T ss_pred eEEEEEeeeEeecCCCceEEEEEEEEEe----CCCEEEEEEehHHHHHHHHHHHHHCchhhcccccccccccCCCCCeee
Confidence 4688888888876667899999999864 45789999999999999999999998 3579999999999
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhcCc-cccCChhhhcccccChhhH
Q 043025 97 EKFRFSAEFIEMRRQGLDLFVNRIASHP-ELQQSEDLKTFLQADEETM 143 (403)
Q Consensus 97 ~~~~~~~~~i~~R~~~L~~fl~~~~~~~-~l~~~~~~~~FL~~~~~~~ 143 (403)
+. ..+.+++++|+..|+.||+.|++.| .++.|+.++.||.....+.
T Consensus 85 ~~-~~~~~~~e~R~~~Le~YL~~Ll~lp~~i~~s~~v~~Ff~~~~~D~ 131 (149)
T 2l73_A 85 GR-VGRTSRGLARLQLLETYSRRLLATAERVARSPTITGFFAPQPLDL 131 (149)
T ss_dssp SS-CCHHHHHHHHHHHHHHHHHHHHHHCHHHHHSHHHHHHHSCCGGGG
T ss_pred cc-ccchHHHHHHHHHHHHHHHHHHhCCccccCCHHHHHHhCCCcccc
Confidence 72 1367899999999999999999876 5999999999999877554
No 20
>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A
Probab=99.79 E-value=9.7e-19 Score=144.60 Aligned_cols=108 Identities=16% Similarity=0.276 Sum_probs=91.7
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCC--------------ccCCCC
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG--------------IFIPPL 90 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~--------------~~iP~l 90 (403)
.+.|+|.+....+ .+++|.|.+... ++..|.|.|||+||.+||..|...||. +++|+|
T Consensus 18 ~~~~sI~~~~~~~----~~y~Y~I~V~~~----d~~~~~V~RRYsdF~~Lh~~L~~~fP~e~g~~~~~~g~~~~~~lP~L 89 (156)
T 2v6v_A 18 LVKASVESFGLED----EKYWFLVCCELS----NGKTRQLKRYYQDFYDLQVQLLDAFPAEAGKLRDAGGQWSKRIMPYI 89 (156)
T ss_dssp EEEEEEEEEEEET----TEEEEEEEEEET----TSCEEEEEECHHHHHHHHHHHHHHCTTTTTCCBCTTCCBCCCCSCCC
T ss_pred ceEEEEeeEEEEC----CEEEEEEEEEEc----CCCEEEEEEEhHHHHHHHHHHHHHcchhhcccccccccccccccCCC
Confidence 4678888776653 355699999874 457899999999999999999999974 679999
Q ss_pred CCCccccccCCCHHHHHHHHHHHHHHHHHHhc-CccccCChhhhcccccChhhHH
Q 043025 91 PEKSAVEKFRFSAEFIEMRRQGLDLFVNRIAS-HPELQQSEDLKTFLQADEETME 144 (403)
Q Consensus 91 P~k~~~~~~~~~~~~i~~R~~~L~~fl~~~~~-~~~l~~~~~~~~FL~~~~~~~~ 144 (403)
|+|.+++ +++++++||.+|+.||+.|+. ++.++.|+.++.||.....++.
T Consensus 90 P~K~~~~----~~~~~e~Rr~~Le~YL~~Ll~lp~~i~~s~~v~~Ff~~~~~D~~ 140 (156)
T 2v6v_A 90 PGPVPYV----TNSITKKRKEDLNIYVADLVNLPDYISRSEMVHSLFVVLNNGFD 140 (156)
T ss_dssp CCCCSSC----CHHHHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHTTSCCSSSSC
T ss_pred CCCcccC----CHHHHHHHHHHHHHHHHHHHhCCccccCCHHHHHHhCCCCcccc
Confidence 9999875 579999999999999999998 4579999999999998776543
No 21
>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens}
Probab=99.67 E-value=7.6e-17 Score=124.77 Aligned_cols=101 Identities=14% Similarity=0.260 Sum_probs=85.3
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHH
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAE 104 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~ 104 (403)
...++|.+..+. +...|.|.+... ++..|.|.|||++|..||.+|++.||...+|+||+|..++ ++..
T Consensus 25 i~~~~v~~~~k~-----~~~~Yvi~V~~s----d~~~~~~~rry~eF~~LH~qLkk~Fp~~~LP~fP~K~ll~---~t~~ 92 (127)
T 2wwe_A 25 IERATILGFSKK-----SSNLYLIQVTHS----NNETSLTEKSFEQFSKLHSQLQKQFASLTLPEFPHWWHLP---FTNS 92 (127)
T ss_dssp EEEEEEEEEETT-----EEEEEEEEEEET----TSCEEEEEECHHHHHHHHHHHHHHTTTSCCCCCCCTTSHH---HHHC
T ss_pred EEEEEEEEEEec-----ccEEEEEEEEEe----CCCeEEEEEEHHHHHHHHHHHHHhCccccCCCCCCccccC---cCHH
Confidence 446777777544 345599999874 4578999999999999999999999999999999999877 3444
Q ss_pred HHHHHHHHHHHHHHHHhc-CccccCChhhhccccc
Q 043025 105 FIEMRRQGLDLFVNRIAS-HPELQQSEDLKTFLQA 138 (403)
Q Consensus 105 ~i~~R~~~L~~fl~~~~~-~~~l~~~~~~~~FL~~ 138 (403)
-++ |+++|+.||+.|++ .|.+.+|+.+..||..
T Consensus 93 ~~e-Rr~~Le~Ylq~Ll~~~~~Ia~Sd~v~~Ff~~ 126 (127)
T 2wwe_A 93 DHR-RFRDLNHYMEQILNVSHEVTNSDCVLSFFLS 126 (127)
T ss_dssp HHH-HHHHHHHHHHHHTTSCHHHHTSHHHHHHHHC
T ss_pred HHH-HHHHHHHHHHHHhcCCceeecCHHHHHHhCC
Confidence 455 99999999999999 7999999999999864
No 22
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=99.67 E-value=8.1e-14 Score=125.83 Aligned_cols=201 Identities=10% Similarity=0.080 Sum_probs=159.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 186 SNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREA 265 (403)
Q Consensus 186 ~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~ 265 (403)
.|+.|......++.++..++.+.+.+..++...+.+......||.++..+.....+. ...+..++..+. ....+..
T Consensus 50 ~D~~Fe~~~~~f~~~e~~~~~l~k~~k~y~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~~~~~~~~~---~~~~d~~ 125 (251)
T 2fic_A 50 KDEQFEQCVQNFNKQLTEGTRLQKDLRTYLASVKAMHEASKKLNECLQEVYEPDWPG-RDEANKIAENND---LLWMDYH 125 (251)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSTT-HHHHHHHHHHHH---HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCC-chhHHHHHHHHH---HHHHHHH
Confidence 389999999999999999999999999999999999999999999998865433221 122333444333 2223333
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHH
Q 043025 266 HQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRR 345 (403)
Q Consensus 266 ~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~ 345 (403)
......+.+||..|..++..++.+++.|..++.+|+.+.+++.+.+.+-.+ ++ ..+.+++.+++.+++.
T Consensus 126 ~~l~~~vi~Pl~~~~~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~k----d~-------~kl~kae~el~~ak~~ 194 (251)
T 2fic_A 126 QKLVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKK----DE-------AKIAKAEEELIKAQKV 194 (251)
T ss_dssp HHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCcC----cH-------HHHHHHHHHHHHHHHH
Confidence 445577999999999999999999999999999999988776654332111 23 3445566777888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043025 346 FETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEACS 401 (403)
Q Consensus 346 ~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~~ 401 (403)
|+.++..++.|++.|...+...+...|..|+..|+.||.++...|+.+.+.++.+.
T Consensus 195 ye~ln~~L~~eLp~l~~~~~~~~~~~l~~f~~~Q~~f~~~~~~~~~~L~~~l~~~~ 250 (251)
T 2fic_A 195 FEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVGLE 250 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999998764
No 23
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=99.64 E-value=6e-14 Score=126.21 Aligned_cols=202 Identities=11% Similarity=0.099 Sum_probs=163.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAH 266 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~ 266 (403)
|+.|......++.++..++.|.+.+..+....+.+......||.++..+....... ...+..+++ .+.....+...
T Consensus 36 D~~fe~~~~~f~~~e~~~~~l~k~~~~y~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~~~~~~---~~~~~~~~~~~ 111 (244)
T 1uru_A 36 DEIFDDHLNNFNRQQASANRLQKEFNNYIRCVRAAQAASKTLMDSVCEIYEPQWSG-YDALQAQTG---ASESLWADFAH 111 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSTT-HHHHHHHHH---HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-chHHHHHHH---HHHHHHHHHHH
Confidence 89999999999999999999999999999998899888889999998876554322 123333333 34444455666
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 043025 267 QLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRF 346 (403)
Q Consensus 267 ~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~ 346 (403)
.....+.+||..|..++..++..++.|..++.+|+.+.+++.+.+.+-++ ...+.|+.+ ++.+++.+++.|
T Consensus 112 ~~~~~vi~Pl~~~~~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~k--~kd~~kl~~-------ae~el~~ak~~y 182 (244)
T 1uru_A 112 KLGDQVLIPLNTYTGQFPEMKKKVEKRNRKLIDYDGQRHSFQNLQANANK--RKDDVKLTK-------GREQLEEARRTY 182 (244)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCB--TTBCCTTTT-------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc--CccHHHHHH-------HHHHHHHHHHHH
Confidence 67788999999999999999999999999999999998877665432111 123445544 455667778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043025 347 ETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEACS 401 (403)
Q Consensus 347 ~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~~ 401 (403)
+.++..++.|++.|...+...+..+|..|+..|+.||.++...|+.+.+.++.+.
T Consensus 183 e~ln~~L~~eLp~l~~~~~~~~~~~l~~fv~~q~~~~~~~~~~~~~l~~~~~~l~ 237 (244)
T 1uru_A 183 EILNTELHDELPALYDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDKLA 237 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998887653
No 24
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Probab=99.60 E-value=2.5e-15 Score=141.61 Aligned_cols=111 Identities=24% Similarity=0.376 Sum_probs=96.3
Q ss_pred CcEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCC--------ccCCCCCCCcc
Q 043025 24 PYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG--------IFIPPLPEKSA 95 (403)
Q Consensus 24 ~~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~--------~~iP~lP~k~~ 95 (403)
..+.|+|+++++.... ++|++|.|.+... ++..|.|.|||+||..||..|...||. +++|+||+|..
T Consensus 22 ~~~~v~I~~~~~~~~~-~~~~~Y~i~v~~~----~~~~~~v~RrYsdF~~Lh~~L~~~fp~e~g~~~~~~~lp~lP~k~~ 96 (341)
T 2dyb_A 22 VAISANIADIEEKRGF-TSHFVFVIEVKTK----GGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALAXTLPTLPAKVY 96 (341)
T ss_dssp SEEEEEEEEEEEEESS-SEEEEEEEEEEET----TSCEEEEEEEHHHHHHHHHHHHHHTCC---------CCCCCCCCCC
T ss_pred CcEEEEECCeEEecCC-CcEEEEEEEEEEc----CCcEEEEEeehHHHHHHHHHHHHHCchhhccccccccccCCCCccc
Confidence 4578999999877544 5799999999863 457899999999999999999999984 46999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHHhcCcc-ccCChhhhcccccChhh
Q 043025 96 VEKFRFSAEFIEMRRQGLDLFVNRIASHPE-LQQSEDLKTFLQADEET 142 (403)
Q Consensus 96 ~~~~~~~~~~i~~R~~~L~~fl~~~~~~~~-l~~~~~~~~FL~~~~~~ 142 (403)
++ + ..+++++|+..|+.||+.|+.+|. +..++.+..|+.....+
T Consensus 97 ~~--~-~~~~~e~R~~~Le~yl~~ll~lp~~i~~~~~v~~Ff~~~~~d 141 (341)
T 2dyb_A 97 VG--V-KQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSPYD 141 (341)
T ss_dssp CS--C-HHHHHHHHHHHHHHHHHHHHHSCHHHHTCHHHHHHHSCCHHH
T ss_pred cC--c-cHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccc
Confidence 97 4 788999999999999999999886 89999999999876644
No 25
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=99.44 E-value=2.4e-10 Score=101.51 Aligned_cols=201 Identities=12% Similarity=0.115 Sum_probs=160.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 043025 185 ESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQRE 264 (403)
Q Consensus 185 e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~ 264 (403)
..|+.|......++.++..++.|.+.+.......+.+...-..++.++..+........ ..+..+....+ ....+.
T Consensus 30 T~D~~Fe~~e~rF~~le~~~~kL~k~~k~y~~ai~~~~~~q~~~~~~l~~~y~~~~~~~-~~~~~~~~~~~---~l~~~~ 105 (237)
T 4avm_A 30 TKDERFEQSASNFYQQQAEGHKLYKDLKNFLSAVKVMHESSKRVSETLQEIYSSEWDGH-EELKAIVWNND---LLWEDY 105 (237)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSTTH-HHHHHHHHHHH---HHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcH-HHHHHHHHHHH---HHHHHH
Confidence 35999999999999999999999999999999999999998999999988876543221 11222222222 223333
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHH
Q 043025 265 AHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTR 344 (403)
Q Consensus 265 ~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~ 344 (403)
.......+..|+..|..++..++.++..|..++.+|....+++.+.+.+ +..+ +..+.+++.+++.+++
T Consensus 106 ~~~l~~~vi~Pl~~~~~~~~~i~k~I~KR~~kllDyd~~~~~~~kl~~k----~~kd-------~~kl~kae~el~~a~~ 174 (237)
T 4avm_A 106 EEKLADQAVRTMEIYVAQFSEIKERIAKRGRKLVDYDSARHHLEAVQNA----KKKD-------EAKTAKAEEEFNKAQT 174 (237)
T ss_dssp HHHHCCCCCHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----SSCC-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCCc-------HHHHHHHHHHHHHHHH
Confidence 3444556789999999999999999999999999999998777654322 0112 3566677888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043025 345 RFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 345 ~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~ 400 (403)
.|+.++..++.||+.|...+..-+...|..|+..|..||.++...|..+-.-+..+
T Consensus 175 ~ye~lN~~L~~eLP~l~~~~~~~~~~~~~~~i~~q~~f~~~~~~~~~~l~~~~~~~ 230 (237)
T 4avm_A 175 VFEDLNQELLEELPILYNSRIGCYVTIFQNISNLRDVFYREMSKLNHNLYEVMSKL 230 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988776654
No 26
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=99.39 E-value=5.1e-10 Score=99.54 Aligned_cols=199 Identities=14% Similarity=0.121 Sum_probs=156.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAH 266 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~ 266 (403)
|+.|......+..++..++.|.+-+.....+.+.+...-..++.++..+......... ....++..++. ...+...
T Consensus 37 D~~F~~~e~~F~~le~~~~kL~k~~k~y~~ai~~~~~~q~~~ae~l~~ly~p~~~~~~-~~~~~~~~~~~---l~~d~~~ 112 (243)
T 4a3a_A 37 DEQFEEYVQNFKRQEAEGTRLQRELRGYLAAIKGMQEASMKLTESLHEVYEPDWYGRE-DVKMVGEKCDV---LWEDFHQ 112 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSTTHH-HHHHHHHHHHH---HHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccCcc-chHHHHHHHHH---HHHHHHH
Confidence 8999999999999999999999999999999999999999999999988654422110 11112222222 1222223
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 043025 267 QLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRF 346 (403)
Q Consensus 267 ~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~ 346 (403)
........|+..|..++..++.++..|..++.+|....+++++...+ + +| -+..|.+++.+++.+++.|
T Consensus 113 ~l~d~~l~Pl~~l~~~f~~i~k~I~KR~~KllDYD~~~~k~~kL~~K-------~-~k---d~~kl~kae~el~~Ak~~Y 181 (243)
T 4a3a_A 113 KLVDGSLLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQSS-------K-RK---DESRISKAEEEFQKAQKVF 181 (243)
T ss_dssp HHHHTHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------S-SC---CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChHHHHHHHHhcchHHHHHHHHHHHHHHHhc-------c-cc---cHHHHHHHHHHHHHHHHHH
Confidence 33456678999999999999999999999999999988776554322 1 11 1256667788888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043025 347 ETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 347 ~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~ 400 (403)
+.++..++.||+.|...+..-|...|..|+..|..||.++.....++-.-++.+
T Consensus 182 e~lN~~L~eELP~l~~~r~~~~~~~~~s~i~~Q~~f~~e~~k~~~~l~~~~~~~ 235 (243)
T 4a3a_A 182 EEFNVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHKEIAVLCHKLYEVMTKL 235 (243)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999999999999999999999999999999999998887766554
No 27
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=99.12 E-value=2.9e-08 Score=89.30 Aligned_cols=191 Identities=12% Similarity=0.170 Sum_probs=145.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHH------HHHHHHHHHHHHHHHHHh--hhh
Q 043025 185 ESNPEYEKLKHYIFELENHLAEAQKHAYRLVK----------------RHR------ELGESLSDFGKAAKLLGA--CEG 240 (403)
Q Consensus 185 e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k----------------~~~------~l~~~~~~l~~~~~~l~~--~e~ 240 (403)
+.|+.|......++.++..+..|.+....... ... .+..+...||.++...+. .+.
T Consensus 28 el~~d~~~lE~r~d~~k~~~~kl~k~~~~yl~~np~~r~~~~~~~~i~k~~g~~k~~~~p~~~~~L~~~m~~~~~~l~~~ 107 (256)
T 1zww_A 28 KLDDDFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMINTMSKIRGQEKGPGYPQAEALLAEAMLKFGRELGDD 107 (256)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSTTTC---------------------CCHHHHHHHHHHHHHHHHCSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccHHHHHHHHHHHhhcccccCCCCCcHHHHHHHHHHHHhhCCCC
Confidence 35888999988888888888777776664332 000 000111234444444333 134
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcc
Q 043025 241 DALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLML 319 (403)
Q Consensus 241 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~ 319 (403)
+.++.++..+|.+...++.....+.......|++||..++. .+..+....+.+..+..+|..+..++.
T Consensus 108 s~~g~aL~~~g~a~~~la~~~~~~~~~i~~~~l~pl~~~l~~~~k~i~k~rkkl~~~rLdyD~~k~k~~----------- 176 (256)
T 1zww_A 108 CNFGPALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFGYKKKRQG----------- 176 (256)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTT-----------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------
Confidence 57889999999999999999888888888999999999875 888888888888888889988754321
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 320 TRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEA 399 (403)
Q Consensus 320 ~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~ 399 (403)
|. ++.+++.++.+|+..+..+..++..|.... .++-..|.+|+..|+.||+++.+.++.+.+.++.
T Consensus 177 ----k~---------~eeEle~A~~~fe~~~e~~~~~m~~l~~~e-~e~~~~L~~~v~aQl~y~~~~~e~L~~l~~~l~~ 242 (256)
T 1zww_A 177 ----KI---------PDEELRQALEKFDESKEIAESSMFNLLEMD-IEQVSQLSALVQAQLEYHKQAVQILQQVTVRLEE 242 (256)
T ss_dssp ----TS---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cc---------cHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 356788888999999999999999998654 5666999999999999999999999999999875
Q ss_pred c
Q 043025 400 C 400 (403)
Q Consensus 400 ~ 400 (403)
.
T Consensus 243 ~ 243 (256)
T 1zww_A 243 R 243 (256)
T ss_dssp H
T ss_pred H
Confidence 4
No 28
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=99.03 E-value=6.4e-08 Score=86.17 Aligned_cols=186 Identities=15% Similarity=0.199 Sum_probs=142.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHH
Q 043025 185 ESNPEYEKLKHYIFELENHLAEAQKHAYRLVKR-----------------------------HRELGESLSDFGKAAKLL 235 (403)
Q Consensus 185 e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~-----------------------------~~~l~~~~~~l~~~~~~l 235 (403)
+.++.|..+...++.+......|.+.......- ...|+..|.+.|..|.
T Consensus 12 el~~d~~~lE~r~d~~~~~~~~l~k~~~~yl~pn~~~r~~~~~~~~i~k~~~~~k~~~~~~~~~~L~~~m~~~~~~l~-- 89 (240)
T 2z0v_A 12 KLDDEFLDMERKIDVTNKVVAEILSKTTEYLQPNPAYRAKLGMLNTVSKIRGQVKTTGYPQTEGLLGDCMLKYGKELG-- 89 (240)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHTCCCCCCSSCCCCCCSSCCHHHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHhhcC--
Confidence 347888888888888888777777766655331 0123444444443332
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 043025 236 GACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYV-RAVQSIKATIAERANAFRQQCELAETMKLKEINL 314 (403)
Q Consensus 236 ~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~-~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l 314 (403)
+.+.++.++..+|.+...++.....+.......|.+||..++ ..+..++...+.+.....+|..+..++.
T Consensus 90 ---~ds~~g~aL~~~g~a~~~ia~~~~~~~~~v~~~~l~pL~~~l~~d~k~i~~~rKkle~~rLd~D~ak~k~~------ 160 (240)
T 2z0v_A 90 ---EDSTFGNALIEVGESMKLMAEVKDSLDINVKQTFIDPLQLLQDKDLKEIGHHLKKLEGRRLDYDYKKKRVG------ 160 (240)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTTT------
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 245789999999999999999988888888999999999998 6788888878777778888877643221
Q ss_pred HHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 315 DKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLL 394 (403)
Q Consensus 315 ~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~ 394 (403)
| ..+.+++.++.+|+..+..+..++..+...+ .++-+.|..|++.|+.||+++.+.++.+.
T Consensus 161 ---------k---------~~eeEl~~A~~~fe~~~e~~~~~m~~~~~~~-~e~l~~l~~~v~aQl~y~~~~~e~L~~l~ 221 (240)
T 2z0v_A 161 ---------K---------IPDEEVRQAVEKFEESKELAERSMFNFLEND-VEQVSQLAVFIEAALDYHRQSTEILQELQ 221 (240)
T ss_dssp ---------S---------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHST-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------c---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1266778888889999999999999998664 56666999999999999999999999999
Q ss_pred HHhhhc
Q 043025 395 PKLEAC 400 (403)
Q Consensus 395 ~~~~~~ 400 (403)
+.++..
T Consensus 222 ~~l~~~ 227 (240)
T 2z0v_A 222 SKLQMR 227 (240)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 29
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=98.84 E-value=4.5e-06 Score=75.46 Aligned_cols=196 Identities=11% Similarity=0.067 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 194 KHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGAC------EGDALGKAFSELGMKSEALSVKLQREAHQ 267 (403)
Q Consensus 194 ~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~------e~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 267 (403)
...+..++..++++.+.+..++.....++.+...|+..+..++.. ..+.+..++..+|..+..+..........
T Consensus 27 E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~~~~~L~~f~~~l~ei~~~~~~l~~~ 106 (265)
T 2q12_A 27 EEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLSTQ 106 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666666666666677777777777777776531 12346678889999999998888777888
Q ss_pred HHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 043025 268 LLMNFEEPLKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRF 346 (403)
Q Consensus 268 ~~~~~~e~l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~ 346 (403)
....+..||..++. .+..+++.=+.=++...+|+.+..+.. .+...++. +..+.++..++..++..|
T Consensus 107 ~~~~~~~PL~~f~~~dlk~~ke~kk~fdk~~~~yd~al~k~~-------~~~k~k~~-----e~~l~Ea~~~l~~~Rk~f 174 (265)
T 2q12_A 107 LADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYS-------RLSKKREN-----DKVKYEVTEDVYTSRKKQ 174 (265)
T ss_dssp HHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHTSCCC-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCCCcc-----hhhHHHHHHHHHHHHHHH
Confidence 88889999998874 566666543333334445555443322 22222211 233456677788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhcc
Q 043025 347 ETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWR-TLLPKLEACS 401 (403)
Q Consensus 347 ~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We-~~~~~~~~~~ 401 (403)
....-.....+...+..+..++-..|..|+..+..|+++..++|. ++.|.++.+.
T Consensus 175 ~~~~ldyv~~l~~l~~kk~~e~le~l~~~~~a~~~ff~~g~e~~~~~~~p~~~~l~ 230 (265)
T 2q12_A 175 HQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIG 230 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888899999999999999999999999995 8888887654
No 30
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=98.73 E-value=1.7e-05 Score=75.74 Aligned_cols=195 Identities=11% Similarity=0.064 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----h-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 195 HYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGA-----C-EGDALGKAFSELGMKSEALSVKLQREAHQL 268 (403)
Q Consensus 195 ~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~-----~-e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (403)
..+..++..++.+.+.+.+++....+++.+...|+..|..++. . ..+.+..++..+|..+..+...........
T Consensus 28 ~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~v~~~l~~f~~~~~ei~~~~~~l~~~~ 107 (385)
T 2q13_A 28 EDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLSTQL 107 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555565666666666777777766543 1 223456778899999999887777777777
Q ss_pred HHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 269 LMNFEEPLKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFE 347 (403)
Q Consensus 269 ~~~~~e~l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~ 347 (403)
...+..||..++. .+..+++.=+.=++...+|+.+.. +...+...++ .+....+++.++..++..|.
T Consensus 108 ~~~~~~PL~~f~~~di~~~ke~kk~fek~~~~yd~al~-------k~~~~~k~k~-----~e~~~~ea~~~l~~~rk~f~ 175 (385)
T 2q13_A 108 ADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAIN-------RYSRLSKKRE-----NDKVKYEVTEDVYTSRKKQH 175 (385)
T ss_dssp HHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-------HHHTCCSSSC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhcCCCCCc-----hhhHHHHHHHHHHHHHHHHH
Confidence 7788889888875 455555532222223334443332 2222221111 11233456677778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhcc
Q 043025 348 TIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAW-RTLLPKLEACS 401 (403)
Q Consensus 348 ~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~W-e~~~~~~~~~~ 401 (403)
...-.....|...+..+..++-..|..|+..++.|+++..++| +++.+.++.+.
T Consensus 176 ~~~ldy~~~l~~l~~rk~~e~le~l~~~~~a~~~ff~~g~~~~~~~~~~~~~~l~ 230 (385)
T 2q13_A 176 QTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIG 230 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877778888988999999999999999999999999999 48888776653
No 31
>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A*
Probab=98.59 E-value=0.00015 Score=62.49 Aligned_cols=201 Identities=12% Similarity=0.092 Sum_probs=132.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 186 SNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREA 265 (403)
Q Consensus 186 ~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~ 265 (403)
.|.+++.--+.+++....++.|.+.++++..+...++.....||..|..+|.-++ .++..|..+|++...+...-
T Consensus 5 vD~EL~~klE~l~~~q~~Y~~L~~~~~~l~~~~~~l~qtq~~lG~~f~~l~~~~p-~l~~~f~~~~~~~r~~~k~g---- 79 (224)
T 1i4d_A 5 VDLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSP-ELQEEFGYNAETQKLLCKNG---- 79 (224)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHHHHH----
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc-HHHHHHHHHHHHHHHHHHhH----
Confidence 4777777777788888889999999999999999999999999999999998874 57778888887776654321
Q ss_pred HHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHH
Q 043025 266 HQLLMNFEEPLKDYVRAVQSIK-ATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTR 344 (403)
Q Consensus 266 ~~~~~~~~e~l~~~~~~~~s~k-~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~ 344 (403)
..+..+|+.++..+.-+. -++.+=..-+..|+.+.-+.......++.+.....+ ..--..++.+....+.++.
T Consensus 80 ----~~Ll~~L~~f~s~l~T~~~kaI~DT~lTIk~ye~aR~EY~ay~~~~ee~~~~~~~--~~~l~rve~~q~~~~~ak~ 153 (224)
T 1i4d_A 80 ----ETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRD--AGTRGRLESAQATFQAHRD 153 (224)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHhHhccHHHHHHHHHHHHhHhHHHHHhhHHHhhccccc--ccchhhHHHHHHHHHHHHH
Confidence 223344444444332221 122222222333444433333333333443311100 0001123346677778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043025 345 RFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKL 397 (403)
Q Consensus 345 ~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~ 397 (403)
+|+.+...+..=+.-.+..|..+|...|.-|......|+..+.+..+..+..+
T Consensus 154 kf~kLR~DV~~KleLLd~~r~kv~~~qL~~~~~al~~y~~~~~~~l~~~~~~f 206 (224)
T 1i4d_A 154 KYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQTLQQF 206 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999998777544
No 32
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=98.23 E-value=0.0018 Score=62.14 Aligned_cols=193 Identities=11% Similarity=0.077 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhh------hhhHHHHHHHHHHHHHHHHH
Q 043025 193 LKHYIFELENHLAEAQKHAYRLVKRH-------RELGESLSDFGKAAKLLGACE------GDALGKAFSELGMKSEALSV 259 (403)
Q Consensus 193 ~~~~i~~le~~l~~l~k~~~~l~k~~-------~~l~~~~~~l~~~~~~l~~~e------~~~L~~~~~~~~~~~~~~~~ 259 (403)
+|..+..++..+..+.+...++++.- ..+..+...|+..+..++... ...+...+..++.....+..
T Consensus 42 FRa~l~~~E~~~~~l~~~l~kl~k~~~~~~~~~~~~~~a~~~f~~~l~~~~~~~~~~~~~d~~~~~~l~~f~~~~~ei~~ 121 (407)
T 4h8s_A 42 TRSLLSVFEEDAGTLTDYTNQLLQAMQRVYGAQNEMCLATQQLSKQLLAYEKQNFALGKGDEEVISTLHYFSKVVDELNL 121 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSCCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555544 444444444554444332211 12455667788888888877
Q ss_pred HHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHH
Q 043025 260 KLQREAHQLLMNFEEPLKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAE 338 (403)
Q Consensus 260 ~~~~~~~~~~~~~~e~l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~ 338 (403)
............+.+||..++. .+..+++.=+.=+.....|+.+.. +...+...++. + ....+...+
T Consensus 122 ~~~~L~~~~~~~i~~pL~~f~k~di~~~ke~kK~Fek~~~~Yd~~l~-------Ky~~~~k~k~~--~---~~~~e~~~~ 189 (407)
T 4h8s_A 122 LHTELAKQLADTMVLPIIQFREKDLTEVSTLKDLFGLASNEHDLSMA-------KYSRLPKKKEN--E---KVKTEVGKE 189 (407)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHSCSTTCC--H---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCc--h---HHHHHHHHH
Confidence 7666677777778888888765 355555432222223333443333 22333222211 1 111233445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh
Q 043025 339 SEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWR-TLLPKL 397 (403)
Q Consensus 339 ~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We-~~~~~~ 397 (403)
+..++..|....-.....+..++..+..++-..|..|...+..|+++..+.|. .+.+.+
T Consensus 190 l~~~Rk~f~~asldyv~~l~~lq~rk~~e~le~l~~~~~a~~~~f~~~~~~~~~~~~~~~ 249 (407)
T 4h8s_A 190 VAAARRKQHLSSLQYYCALNALQYRKQMAMMEPMIGFAHGQINFFKKGAEMFSKRMDSFL 249 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777777788888888899999999999999999999998873 344443
No 33
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=97.68 E-value=0.028 Score=50.48 Aligned_cols=77 Identities=12% Similarity=0.148 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~ 400 (403)
|+.++++++.......+.++..|..--..+...+..++..|...++.+|..|+...-..........+.+...++++
T Consensus 171 k~~ka~~~Y~~~v~~~n~~~~~~~~~~~~~~~~lQ~le~~R~~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 247 (276)
T 2v0o_A 171 KSKKATDTYKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIHIKEIIGSLSNAIKEIHLQIGQVHEEFINNMANT 247 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhC
Confidence 34445555555555666667777655556777888889999999999999999877766666666666666665544
No 34
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=97.51 E-value=0.053 Score=49.36 Aligned_cols=159 Identities=13% Similarity=0.141 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-H--------------HHHHHHHHHHHHHHHHHHH
Q 043025 242 ALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSI-K--------------ATIAERANAFRQQCELAET 306 (403)
Q Consensus 242 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~-k--------------~~l~~R~~~~~~~~~~~~~ 306 (403)
.+..++..+-...+.++......+..+...+.++|..+....... | +....-.++...|...+..
T Consensus 73 t~~~aw~~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e 152 (305)
T 2efl_A 73 TSCKAFISNLNEMNDYAGQHEVISENMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKE 152 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555666666554433211 1 1111111222334444444
Q ss_pred HHHHHHhHHHhcc---cCcchHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
Q 043025 307 MKLKEINLDKLML---TRSDKVGEAEIEYKELKAESEDSTRRFET---------------IVRLMNEEIVRFQEQKTLDM 368 (403)
Q Consensus 307 l~~k~~~l~kl~~---~~~~ki~~l~~~i~~~~~~~~~~~~~~~~---------------i~~~~~~El~~f~~~r~~~l 368 (403)
+++.+...+++.. ....++++++.+..+....++.++++|.. ---.+...+..++..|...+
T Consensus 153 ~e~a~~~~~~~~~~~~~s~~~~eK~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~lQ~le~~r~~~l 232 (305)
T 2efl_A 153 ADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKADYSSILQKFNHEQHEYYHTHIPNIFQKIQEMEERRIVRM 232 (305)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333333321 11234555555555554444444444433 23334456778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043025 369 GIAFHNFSKGQARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 369 ~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~ 400 (403)
+.+|..|+.............-+.+...++.+
T Consensus 233 k~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~i 264 (305)
T 2efl_A 233 GESMKTYAEVDRQVIPIIGKCLDGIVKAAESI 264 (305)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 99999999987777666666666666665544
No 35
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=97.43 E-value=0.072 Score=48.99 Aligned_cols=76 Identities=16% Similarity=0.139 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhc
Q 043025 325 VGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQ-ARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 325 i~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~q-i~~~~~~~~~We~~~~~~~~~ 400 (403)
+..+++++...-..++..+..|..--..+...+..++..|...|+.+|..|+... +..........+.+...++++
T Consensus 199 ~~~a~~~Y~~~l~~~n~~~~~y~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~~~~~~~~~~~~~~~~~~e~~~~~i~~i 275 (320)
T 3m3w_A 199 AEKMKTQYEQTLAELNRYTPRYMEDMEQAFESCQAAERQRLLFFKDVLLTLHQHLDLSSSDKFHELHRDLQQSIEAA 275 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHhc
Confidence 3445566666666677777777766666778888899999999999999998632 111244444555555555543
No 36
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.047 Score=46.84 Aligned_cols=140 Identities=18% Similarity=0.192 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 043025 202 NHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVR 281 (403)
Q Consensus 202 ~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ 281 (403)
..|..|-+.-..++.....++.+....+.++..|+..+.+.|+++..++|..+..++.... .|...+..|..
T Consensus 23 r~L~~LIk~EK~vi~s~e~~are~~~~A~~Ls~WG~~edddl~DIsdklgvLl~e~ge~e~--------~~a~~~d~yR~ 94 (234)
T 3plt_A 23 RKLSQLVKTEKGVLRAMEVVASERREAAKQLSLWGADNDDDVSDVTDKLGVLIYELGELQD--------QFIDKYDQYRV 94 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 3444555555666777777888888888899999988877788777777777666665433 34445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc--ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 282 AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLM--LTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEE 356 (403)
Q Consensus 282 ~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~--~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~E 356 (403)
.+.++++ |+..++....-.+++. .++.+|+ .....|+..|++++..++.+.-.++..+..++....+|
T Consensus 95 ~LK~IR~----~E~svqp~R~~R~~l~---~~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~lKE 164 (234)
T 3plt_A 95 TLKSIRN----IEASVQPSRDRKEKIT---DEIAHLKYKDPQSTKIPVLEQELVRAEAESLVAEAQLSNITREKLKA 164 (234)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHH---HHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHhhHHHHHHHHHH---HHHHHHhccCCCCchHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHH
Confidence 5555433 3433333322222222 2223333 33456888888888888887666666666665544333
No 37
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=97.43 E-value=0.057 Score=47.67 Aligned_cols=188 Identities=12% Similarity=0.074 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 199 ELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE-----GDALGKAFSELGMKSEALSVKLQREAHQLLMNFE 273 (403)
Q Consensus 199 ~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e-----~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (403)
.+...+.+|...+.++.+..+.+..+...|..+|..+++.- ...|+.++..+......+..............|.
T Consensus 26 ~~~P~~e~li~~~~kY~~al~~~~~a~~~f~dal~kia~~A~~s~gs~elG~~L~~i~~~~r~ie~~l~~~~~~~~~~li 105 (253)
T 2ykt_A 26 QFNPSLRNFIAMGKNYEKALAGVTYAAKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELL 105 (253)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTH
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666677777777777777777777777642 2467777777777776666665666666666667
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc----cc-Ccch-HHHHHHHHHHHHHHHHHHHHHH
Q 043025 274 EPLKDYVRA-VQSIKATIAERANAFRQQCELAETMKLKEINLDKLM----LT-RSDK-VGEAEIEYKELKAESEDSTRRF 346 (403)
Q Consensus 274 e~l~~~~~~-~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~----~~-~~~k-i~~l~~~i~~~~~~~~~~~~~~ 346 (403)
.||..-+.. ...+.. +.. ....+|....+.+.+....+-|++ ++ +..+ ...+..-++.++.+...++.-.
T Consensus 106 ~pL~~kie~d~K~v~~-~~K--~~~~e~k~~~~~l~K~~~e~~kl~KK~k~gk~~~~~~~~~~~~~e~v~~~~~~le~~~ 182 (253)
T 2ykt_A 106 TQLEQKVELDSRYLSA-ALK--KYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENYV 182 (253)
T ss_dssp HHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHH-HHH--HHHHHHHHhHhHHHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 776665442 222222 222 233455566666666655555554 12 2111 1222233333333322222222
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 347 ETIVR-LMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLL 394 (403)
Q Consensus 347 ~~i~~-~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~ 394 (403)
..... .+..|-.|| --|-..+..++...+.+|.+.....+.-+
T Consensus 183 ~~~lr~aL~EERrRy-----cflv~~~~~v~~~~~~~h~~~~~~L~~~l 226 (253)
T 2ykt_A 183 SDGYKTALTEERRRF-----CFLVEKQCAVAKNSAAYHSKGKELLAQKL 226 (253)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22222 244555555 44556666666666667766544433333
No 38
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=97.26 E-value=0.17 Score=49.47 Aligned_cols=161 Identities=11% Similarity=0.127 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHH-HH-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH---------HHHH
Q 043025 219 RELGESLSDFGKAAKL-LG-ACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAV---------QSIK 287 (403)
Q Consensus 219 ~~l~~~~~~l~~~~~~-l~-~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~---------~s~k 287 (403)
.+.+..|..|+..+.. +. ..+...+..++..+-...+.++......+..+...+.++|..+.... ..-|
T Consensus 53 ~eYAk~L~kLakk~~~~~~~~~e~gtl~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~~~K~~~~~~kerK 132 (486)
T 3haj_A 53 KAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETK 132 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCSSSSBHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4445555555554322 11 12223566677777677777777666666666666777776665422 1111
Q ss_pred HH-------HHHH-------HHHHHHHHHHHHHHHHHHHhHHHhc---ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 288 AT-------IAER-------ANAFRQQCELAETMKLKEINLDKLM---LTRSDKVGEAEIEYKELKAESEDSTRRFETIV 350 (403)
Q Consensus 288 ~~-------l~~R-------~~~~~~~~~~~~~l~~k~~~l~kl~---~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~ 350 (403)
.+ .+.. .++...|...+...+..+.+..+.. +.....+++++..+.++..+++.++++|....
T Consensus 133 ~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v 212 (486)
T 3haj_A 133 EAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSL 212 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1111 1112223333333333222222221 12234566666777776666666666654443
Q ss_pred H--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 351 R--------------LMNEEIVRFQEQKTLDMGIAFHNFSKGQ 379 (403)
Q Consensus 351 ~--------------~~~~El~~f~~~r~~~l~~~l~~~a~~q 379 (403)
. .+...+..++..|...|+.+|..|+...
T Consensus 213 ~~~n~~~~~y~~~~~~~~~~lQ~lEeeRi~~lK~~L~~y~~~l 255 (486)
T 3haj_A 213 KELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHL 255 (486)
T ss_dssp HHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3445566666677777777777776543
No 39
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=97.25 E-value=0.11 Score=47.21 Aligned_cols=159 Identities=11% Similarity=0.146 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHH
Q 043025 242 ALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIK---------------ATIAERANAFRQQCELAET 306 (403)
Q Consensus 242 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k---------------~~l~~R~~~~~~~~~~~~~ 306 (403)
.+..++..+-...+.++......+..+...+.++|..+.......+ ++...-.++...|..++..
T Consensus 66 t~~~~w~~~l~~~e~~a~~h~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e 145 (301)
T 2efk_A 66 SQQQSFVQILQEVNDFAGQRELVAENLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCRE 145 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555556666665544322211 1111122223334444444
Q ss_pred HHHHHHhHHHhcc---cCcchHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
Q 043025 307 MKLKEINLDKLML---TRSDKVGEAEIEYKELKAESEDSTRRFET---------------IVRLMNEEIVRFQEQKTLDM 368 (403)
Q Consensus 307 l~~k~~~l~kl~~---~~~~ki~~l~~~i~~~~~~~~~~~~~~~~---------------i~~~~~~El~~f~~~r~~~l 368 (403)
+++.+...++..+ .....+++++..+.+....++.++++|.. --..+...+..++..|...|
T Consensus 146 ~e~a~~~~~~a~~~~~~s~~~~eK~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~p~~~~~lQ~lee~r~~~l 225 (301)
T 2efk_A 146 AEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAAQLQRFNRDQAHFYFSQMPQIFDKLQDMDERRATRL 225 (301)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433333333221 11223455555555555555555554432 22234456667777888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043025 369 GIAFHNFSKGQARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 369 ~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~ 400 (403)
+.+|..|+..............+.+...++++
T Consensus 226 k~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~i 257 (301)
T 2efk_A 226 GAGYGLLSEAELEVVPIIAKCLEGMKVAANAV 257 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 99999999987777776666777776666554
No 40
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=97.08 E-value=0.19 Score=46.76 Aligned_cols=180 Identities=12% Similarity=0.151 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHHH--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---------HHHHH
Q 043025 219 RELGESLSDFGKAAKLLG--ACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRA---------VQSIK 287 (403)
Q Consensus 219 ~~l~~~~~~l~~~~~~l~--~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~---------~~s~k 287 (403)
.+.+..+..|+..+.... ..+...+..++..+-...+.++......+..+...+.++|..+... ...-|
T Consensus 60 ~eYak~L~kLakk~~~~~~~~~e~gtl~~aw~~l~~e~e~~a~~H~~la~~L~~~v~~~l~~~~~e~~~k~~~~~~ke~K 139 (350)
T 3aco_A 60 KAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETK 139 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTSCBCTTSSBHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 444555555555443221 1233456667777777777777777777777777777777766432 00001
Q ss_pred HH---H----HHHHHH-------HHHHHHHHHHHHHHHHhHHHhcc---cCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 288 AT---I----AERANA-------FRQQCELAETMKLKEINLDKLML---TRSDKVGEAEIEYKELKAESEDSTRRFETIV 350 (403)
Q Consensus 288 ~~---l----~~R~~~-------~~~~~~~~~~l~~k~~~l~kl~~---~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~ 350 (403)
.+ + +..... -..|...+...+..+.+.++..+ ..+..+++++..+.++..+++.++++|....
T Consensus 140 ~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v 219 (350)
T 3aco_A 140 EAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSL 219 (350)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTTSSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1 001111 11222222222222222111111 1123455666666666655555555544333
Q ss_pred H--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhh
Q 043025 351 R--------------LMNEEIVRFQEQKTLDMGIAFHNFSKGQARLA--SSIADAWRTLLPKLEA 399 (403)
Q Consensus 351 ~--------------~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~--~~~~~~We~~~~~~~~ 399 (403)
. .+...+..++..|...|+..|..|+.. +... ..+....+.+...++.
T Consensus 220 ~~~n~~~~~~~~~~~~~~~~~Q~lee~Rl~~lk~~l~~~~~~-l~~~~~~~~~~~~~~l~~~i~~ 283 (350)
T 3aco_A 220 KELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKH-LDLSNVAGYKAIYHDLEQSIRA 283 (350)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccchhHHHHHHHHHHHHHh
Confidence 3 334455566667777777777777766 2222 2344444444444443
No 41
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=97.03 E-value=0.18 Score=45.59 Aligned_cols=77 Identities=12% Similarity=0.128 Sum_probs=53.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhh
Q 043025 323 DKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQ-ARLASSIADAWRTLLPKLEA 399 (403)
Q Consensus 323 ~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~q-i~~~~~~~~~We~~~~~~~~ 399 (403)
.++..+++++...-...+..+..|..--..+...+..++..|...|+.+|..|+... +.....+...-+.+...+++
T Consensus 184 ~~~~~a~~~Y~~~v~~~n~~~~~~~~~~p~~~~~~Q~lee~Ri~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 261 (290)
T 3i2w_A 184 DQVQKCREKYEQAIAEITKYNSVYIEDMTSVFEKCQTFEKTRLQFFKEILFNVHSCLDLTKVQSLPQIYEEFSHTINN 261 (290)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHh
Confidence 346666777777777777777777777777888889999999999999999999764 22222333444555544444
No 42
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=96.92 E-value=0.24 Score=45.25 Aligned_cols=180 Identities=13% Similarity=0.142 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHH--HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-------------
Q 043025 219 RELGESLSDFGKAAKLL--GACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAV------------- 283 (403)
Q Consensus 219 ~~l~~~~~~l~~~~~~l--~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~------------- 283 (403)
.+.+..+..|+...... ...+.+.+..++..+-...+.++......+..+...+.++|..+....
T Consensus 60 ~eYak~L~kLakk~~~~~~~~~e~gtl~~aw~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~k~~~~~~ke~k 139 (312)
T 3abh_A 60 KAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETK 139 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCTTSSBHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 44455555555544321 112334566677777777777777776777777767777776654321
Q ss_pred ---HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHhccc---C--------------cchHHHHHHHHHHHH
Q 043025 284 ---QSIKATIAER-------ANAFRQQCELAETMKLKEINLDKLMLT---R--------------SDKVGEAEIEYKELK 336 (403)
Q Consensus 284 ---~s~k~~l~~R-------~~~~~~~~~~~~~l~~k~~~l~kl~~~---~--------------~~ki~~l~~~i~~~~ 336 (403)
..+..+.+.. .++-..|...+..++..+.+.++..+. . ..++..+.+++...-
T Consensus 140 ~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v 219 (312)
T 3abh_A 140 EAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSL 219 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCCSHHHHGGGTTTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 112223333333333332222221110 0 112344455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhh
Q 043025 337 AESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLA--SSIADAWRTLLPKLEA 399 (403)
Q Consensus 337 ~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~--~~~~~~We~~~~~~~~ 399 (403)
..++..+..|..--..+...+..++..|...|+..|..|+.. +... ..+...-+.+...++.
T Consensus 220 ~~~n~~~~~~~~~~~~~~~~~Q~lee~Rl~~lk~~l~~~~~~-~~~~~~~~~~~~~~~l~~~i~~ 283 (312)
T 3abh_A 220 KELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKH-LDLSNVAGYKAIYHDLEQSIRA 283 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCGGGSTTHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhccchHHHHHHHHHHHHHh
Confidence 556666666655555566677778888888888888888877 2221 2344444445544443
No 43
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=96.92 E-value=0.19 Score=44.11 Aligned_cols=186 Identities=13% Similarity=0.153 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 043025 202 NHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE------GDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEP 275 (403)
Q Consensus 202 ~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e------~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 275 (403)
..+.++.+.+.++.+..+.+..+...|..+|..+++.- +..|+.++..+......+-.............|..|
T Consensus 31 P~~e~lv~~g~ky~~al~~~~~a~~af~Da~qKvad~A~~s~g~s~elG~~L~~i~~~hr~ie~~l~~~~k~~~~eli~p 110 (253)
T 2d1l_A 31 PVWEDFINKAGKLQSQLRTTVVAAAAFLDAFQKVADMATNTRGGTREIGSALTRMCMRHRSIEAKLRQFSSALIDCLINP 110 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555556666665522 235666666666666555555555555555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc----c----cCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 276 LKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLM----L----TRSDKVGEAEIEYKELKAESEDSTRRFE 347 (403)
Q Consensus 276 l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~----~----~~~~ki~~l~~~i~~~~~~~~~~~~~~~ 347 (403)
|..-+..-.-.-..+.+. ...++..+...+.++...+.|++ . +..+--..+..+++.++.....++.-..
T Consensus 111 Le~k~e~d~k~~~~~~K~--~~~~~k~~r~elkk~~~~~~k~qkK~rk~~~~gk~~~~~~l~~a~q~v~~~~~~le~~~~ 188 (253)
T 2d1l_A 111 LQEQMEEWKKVANQLDKD--HAKEYKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDIQPQLDSALQDVNDKYLLLEETEK 188 (253)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGTTTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHHHHHHhccccccCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 655444322111122222 22345555666666555554443 1 1111112333344333333222222111
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Q 043025 348 T-IVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQAR------LASSIADAWRTLL 394 (403)
Q Consensus 348 ~-i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~------~~~~~~~~We~~~ 394 (403)
. +...+.+|-.|| --|-+.+..++..++. +++..+..|..+.
T Consensus 189 ~~~r~AL~EERrRy-----cflv~~l~pv~~~e~~~~~e~~~l~~~l~~~~~~~ 237 (253)
T 2d1l_A 189 QAVRKALIEERGRF-----CTFISMLRPVIEEEISMLGEITHLQTISEDLKSLT 237 (253)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHGGGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 1 122244555555 4566666667777664 6777777787654
No 44
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=96.89 E-value=0.32 Score=46.27 Aligned_cols=77 Identities=9% Similarity=0.059 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 323 DKVGEAEIEYKELKAESEDSTRRFETIVRLM---------------NEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIA 387 (403)
Q Consensus 323 ~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~---------------~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~ 387 (403)
..+++++..+.+...++..++++|......+ ...+..++..|...|+.+|..|+...-.......
T Consensus 164 ke~eK~~~k~~k~~~~~~~a~neY~~~l~~~N~~~~~yy~~~lp~~~d~lQ~lEe~Ri~~lk~~L~~~~~~~~~~~~~~~ 243 (406)
T 4dyl_A 164 KDRDKAKDKYVRSLWKLFAHHNRYVLGVRAAQLHHQHHHQLLLPGLLRSLQDLHEEMACILKEILQEYLEISSLVQDEVV 243 (406)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3456677777777777777777776433222 3344556667777777777777776554444444
Q ss_pred HHHHHHHHHhhh
Q 043025 388 DAWRTLLPKLEA 399 (403)
Q Consensus 388 ~~We~~~~~~~~ 399 (403)
...+.+...+++
T Consensus 244 ~~~~~l~~~i~~ 255 (406)
T 4dyl_A 244 AIHREMAAAAAR 255 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 45
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.49 Score=42.40 Aligned_cols=136 Identities=11% Similarity=0.069 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccC
Q 043025 242 ALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTR 321 (403)
Q Consensus 242 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~ 321 (403)
.+..++..+-...+..+......+..+...+..+|+.|..--.. +.....+.+++..+...++.. +.+.
T Consensus 119 ~l~~~W~~v~~e~e~~a~~H~~la~~L~~ev~~pL~~~~e~~~~----~~e~~~l~~~L~~~ak~le~~-------~kk~ 187 (287)
T 3g9g_A 119 ELRNVWDTVIEELKSDLKSSTEYYNTLDQQVVRELKESVENNTS----WRESKDLHSKLSKNAASIEHY-------SKNN 187 (287)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHCSSSSCHH----HHHHHHHHHHHHHHHHHHHHC-------SSCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHH----HHHHHHHHHHHHHHHHHHHHH-------HhhH
Confidence 46666777766777777776666777766777777777632111 112222333444444433332 2111
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043025 322 SDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 322 ~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~ 400 (403)
+ +...++.++..|+.=...+-.-+..++..|..-|+++|..|+...-.+..+..+.=++++..+.++
T Consensus 188 -~-----------a~~~le~a~~qWes~aP~~fe~fQ~lEEeRL~~Lkd~L~~y~~~~sd~~~~~~~~~E~~~~~ll~~ 254 (287)
T 3g9g_A 188 -E-----------NSSHLEEARRQWDQQSPYLFELFETIDYNRLDTLKNCMLRFQTSFSDYLLNTTKECETVMTKFLAF 254 (287)
T ss_dssp -S-----------CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1 122466667777776677888888999999999999999999999999999888888887766543
No 46
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=96.24 E-value=0.72 Score=42.48 Aligned_cols=138 Identities=10% Similarity=0.139 Sum_probs=68.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH----------------HHHHHHHHH-------HHHH
Q 043025 241 DALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQ----------------SIKATIAER-------ANAF 297 (403)
Q Consensus 241 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~----------------s~k~~l~~R-------~~~~ 297 (403)
..+..++..+-...+.++......+..+...+.++|..+..... .+..+.+.. .++.
T Consensus 75 gtl~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~~~k~~~~~~ke~K~~~~~~~k~~k~~~~~~~~l~KaK 154 (337)
T 2x3v_A 75 GSLERAWGAMMTEADKVSELHQEVKNSLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAK 154 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCSSCSBHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666667666543210 011111111 1122
Q ss_pred HHHHHHHHHHHHHHHhHHHhcc---cCcchHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHH
Q 043025 298 RQQCELAETMKLKEINLDKLML---TRSDKVGEAEIEYKELKAESEDSTRRFETI--------------VRLMNEEIVRF 360 (403)
Q Consensus 298 ~~~~~~~~~l~~k~~~l~kl~~---~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i--------------~~~~~~El~~f 360 (403)
..|...+...+..+...++.++ .....+++++..+.++..++..++++|... -..+...+..+
T Consensus 155 k~Y~~~c~e~e~a~~~~~~~~~~~~~s~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~Q~l 234 (337)
T 2x3v_A 155 KAYHLACKEERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTTPQYMEGMEQVFEQCQQF 234 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHhccccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 2333333333333333333321 123445556666666655555555554432 23344455566
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043025 361 QEQKTLDMGIAFHNFSKG 378 (403)
Q Consensus 361 ~~~r~~~l~~~l~~~a~~ 378 (403)
+..|...|+.+|..|+..
T Consensus 235 e~~Rl~~lk~~l~~~~~~ 252 (337)
T 2x3v_A 235 EEKRLVFLKEVLLDIKRH 252 (337)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666777777777777664
No 47
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=90.39 E-value=8.1 Score=33.32 Aligned_cols=42 Identities=7% Similarity=0.110 Sum_probs=23.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDF 228 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l 228 (403)
...|......+..+...++........+......++.++.++
T Consensus 43 ~~~f~~~e~~~~~l~k~~~~y~~~~~~~~~~~~~l~~~~~~l 84 (244)
T 1uru_A 43 LNNFNRQQASANRLQKEFNNYIRCVRAAQAASKTLMDSVCEI 84 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555556666666554
No 48
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=86.27 E-value=15 Score=31.30 Aligned_cols=119 Identities=12% Similarity=0.115 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043025 197 IFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE-----GDALGKAFSELGMKSEALSVKLQREAHQLLMN 271 (403)
Q Consensus 197 i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e-----~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (403)
++.+...|.+|......+.+..+.+..+-..|-.++..+++.- +..|+.++-.++.....+..............
T Consensus 22 meqfnP~l~nlv~lg~~Y~kAl~a~~~A~~~y~dA~~Kige~A~~S~~skeLG~vL~qis~~hR~i~~~le~~~k~f~~e 101 (222)
T 3ok8_A 22 MEQFNPALENLVYLGNNYLRAFHALSEAAEVYFSAIQKIGEQALQSSTSQILGEILVQMSDTQRHLNSDLEVVVQTFHGD 101 (222)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555566666666666555666666665533 23677777777777777666555555555455
Q ss_pred hhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc
Q 043025 272 FEEPLKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLM 318 (403)
Q Consensus 272 ~~e~l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~ 318 (403)
+.-||..=+. ...-+.+. +.....++....+.+++...++.|++
T Consensus 102 lI~pLE~k~e~D~k~i~~~---~K~y~~e~k~~~~~leK~~~elkK~~ 146 (222)
T 3ok8_A 102 LLQHMEKNTKLDMQFIKDS---CQHYEIEYRHRAANLEKCMSELWRME 146 (222)
T ss_dssp THHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence 5555544332 12222221 22344556666666666666666664
No 49
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=84.78 E-value=23 Score=32.34 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043025 330 IEYKELKAESEDSTRRFETIVRL 352 (403)
Q Consensus 330 ~~i~~~~~~~~~~~~~~~~i~~~ 352 (403)
.+++++...++.+..+.....+.
T Consensus 192 k~~eK~~~k~~k~~~~~~~a~~~ 214 (350)
T 3aco_A 192 EQLKKLQDKIEKCKQDVLKTKEK 214 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555544444
No 50
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=84.56 E-value=15 Score=29.97 Aligned_cols=116 Identities=11% Similarity=0.145 Sum_probs=72.8
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHH
Q 043025 267 QLLMNFEEPLKDYVRAVQSIKATIAERANAFR---QQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDST 343 (403)
Q Consensus 267 ~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~---~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~ 343 (403)
+++..+++.+..|...+..+|--+..-...-. .|....+.|++++ ++.+.|..-++++..++
T Consensus 98 reiarllekiqkyfQ~IEtlK~ql~nf~e~RLiYDHYKlKvdELEK~~---------------KdSeKI~RNQsKLssAE 162 (294)
T 3caz_A 98 REIARLLEKIQKYRQEIEEIKKEYKETDKYRERYDHYKVKLDNLEKKN---------------KDQERIERNQQKFKDAE 162 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHhcc---------------chHHHHHHhHHHhhhHH
Confidence 46677888889999988888876655443322 2322222222221 23345555666667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043025 344 RRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKL 397 (403)
Q Consensus 344 ~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~ 397 (403)
..+..++..+..-+...-..+...|..+-...-..|++|++.+-..-..+.|.+
T Consensus 163 taYkqvcsDiInkMnkll~n~~riineaasavwstqlqyakaleaaanpivpyl 216 (294)
T 3caz_A 163 AAYSSVCADLIQKMETVWKKHVSIFAEAASAVWSTQLQYAKALEAAANPIVPYL 216 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhh
Confidence 777777777777777776666677777777777778888776655544444433
No 51
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=82.96 E-value=21 Score=30.47 Aligned_cols=155 Identities=11% Similarity=0.149 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 043025 206 EAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE--GDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAV 283 (403)
Q Consensus 206 ~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e--~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~ 283 (403)
.+.+...++++..+.+..++..+|......+..- ++. .. =..+++..++++. +...+.+....|....
T Consensus 20 e~sr~L~~LIk~EK~vi~s~e~~are~~~~A~~Ls~WG~-~e-dddl~DIsdklgv--------Ll~e~ge~e~~~a~~~ 89 (234)
T 3plt_A 20 ELARKLSQLVKTEKGVLRAMEVVASERREAAKQLSLWGA-DN-DDDVSDVTDKLGV--------LIYELGELQDQFIDKY 89 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TS-CHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhc-CC-CchHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 4667778888888888888888776665554322 110 00 0122233333322 3344555666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 284 QSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAE------IEYKELKAESEDSTRRFETIVRLMNEEI 357 (403)
Q Consensus 284 ~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~------~~i~~~~~~~~~~~~~~~~i~~~~~~El 357 (403)
..++..|+.-. +.+..+.-.+...+++. +++.+++ ..|..+++++..++.+. ......|
T Consensus 90 d~yR~~LK~IR-------~~E~svqp~R~~R~~l~----~~I~kLk~k~P~s~kl~~LeqELvraEae~----lvaEAqL 154 (234)
T 3plt_A 90 DQYRVTLKSIR-------NIEASVQPSRDRKEKIT----DEIAHLKYKDPQSTKIPVLEQELVRAEAES----LVAEAQL 154 (234)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHH----HHHHHHHHHCTTCTHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHH-------HHHHHhhHHHHHHHHHH----HHHHHHhccCCCCchHHHHHHHHHHHHHHh----hHHHHHH
Confidence 66555554322 22222222222223332 4555554 24455555554444442 1122334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 358 VRFQEQKTLDMGIAFHNFSKGQARLASSIAD 388 (403)
Q Consensus 358 ~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~ 388 (403)
..+ +...|+.++.--....+++.++++=
T Consensus 155 ~n~---kR~~lKEa~~~~f~Al~E~aEK~~i 182 (234)
T 3plt_A 155 SNI---TREKLKAAYSYMFDSLRELSEKFAL 182 (234)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 4466777766666666666666543
No 52
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=81.82 E-value=26 Score=30.58 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=36.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhh
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGE------SLSDFGKAAKLLGACE 239 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~------~~~~l~~~~~~l~~~e 239 (403)
.|-|+++-.--..|+.++..+......+.+..+.++. .-.++|.++..++..-
T Consensus 28 ~P~~e~li~~~~kY~~al~~~~~a~~~f~dal~kia~~A~~s~gs~elG~~L~~i~~~~ 86 (253)
T 2ykt_A 28 NPSLRNFIAMGKNYEKALAGVTYAAKGYFDALVKMGELASESQGSKELGDVLFQMAEVH 86 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHH
Confidence 5667777777777788887777777666666655554 3467888887776543
No 53
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=80.40 E-value=29 Score=30.28 Aligned_cols=63 Identities=16% Similarity=0.185 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 330 IEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTL 393 (403)
Q Consensus 330 ~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~ 393 (403)
.+++++..+++.+++++......+..--.+| .....++-..|+++-...+.+.+..+..+..+
T Consensus 163 k~~eK~~~k~~ka~~~Y~~~v~~~n~~~~~~-~~~~~~~~~~lQ~le~~R~~~lk~~l~~~~~~ 225 (276)
T 2v0o_A 163 REIEKAAVKSKKATDTYKLYVEKYALAKADF-EQKMTETAQKFQDIEETHLIHIKEIIGSLSNA 225 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666555444444444455 23334444455555555555555554444433
No 54
>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A*
Probab=72.17 E-value=45 Score=28.37 Aligned_cols=44 Identities=16% Similarity=0.248 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 188 PEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKA 231 (403)
Q Consensus 188 ~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~ 231 (403)
+.|.........+-...+.+.+....+...++.+|..+.++|.-
T Consensus 14 E~l~~~q~~Y~~L~~~~~~l~~~~~~l~qtq~~lG~~f~~l~~~ 57 (224)
T 1i4d_A 14 ELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQK 57 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35566666777777788888888899999999999999998764
No 55
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=71.74 E-value=29 Score=25.92 Aligned_cols=46 Identities=24% Similarity=0.197 Sum_probs=28.0
Q ss_pred HHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 305 ETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIV 350 (403)
Q Consensus 305 ~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~ 350 (403)
......+..|++.+.....++.+++.+|..++++++.+..+.+...
T Consensus 53 qTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr 98 (121)
T 3mq7_A 53 HTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 98 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444433311245678888888888888888877776643
No 56
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=70.48 E-value=31 Score=25.79 Aligned_cols=42 Identities=7% Similarity=0.134 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKT 365 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~ 365 (403)
+|..|...+...++.+..++..|......+..++.+....|.
T Consensus 46 qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re 87 (112)
T 1x79_B 46 QISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSRE 87 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888888999999999988888888888776654
No 57
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=70.39 E-value=19 Score=27.00 Aligned_cols=49 Identities=20% Similarity=0.171 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHhHHHhc-ccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 043025 298 RQQCELAETMKLKEINLDKLM-LTRSDKVGEAEIEYKELKAESEDSTRRF 346 (403)
Q Consensus 298 ~~~~~~~~~l~~k~~~l~kl~-~~~~~ki~~l~~~i~~~~~~~~~~~~~~ 346 (403)
.+++.+.+.|+.-+.++..+. .++.+.+.++..+++.++.++..++..-
T Consensus 10 ~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q 59 (123)
T 2lf0_A 10 NEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVH 59 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666766666666655 3466789999999999998888776553
No 58
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=66.34 E-value=63 Score=27.73 Aligned_cols=30 Identities=17% Similarity=0.099 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 198 FELENHLAEAQKHAYRLVKRHRELGESLSD 227 (403)
Q Consensus 198 ~~le~~l~~l~k~~~~l~k~~~~l~~~~~~ 227 (403)
+.++..+..+.+...++.+....+...+..
T Consensus 55 e~~~~~f~~~e~~~~~l~k~~k~y~~~~~~ 84 (251)
T 2fic_A 55 EQCVQNFNKQLTEGTRLQKDLRTYLASVKA 84 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444333
No 59
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=64.31 E-value=33 Score=23.79 Aligned_cols=14 Identities=7% Similarity=0.214 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHH
Q 043025 282 AVQSIKATIAERAN 295 (403)
Q Consensus 282 ~~~s~k~~l~~R~~ 295 (403)
.+.||.+-|++|.+
T Consensus 4 llSAVeDKLRrrl~ 17 (78)
T 3iv1_A 4 LISAVSDKLRWRMK 17 (78)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45677777766644
No 60
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=63.44 E-value=37 Score=24.11 Aligned_cols=51 Identities=16% Similarity=0.211 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhHHHhc---------ccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 299 QQCELAETMKLKEINLDKLM---------LTRSDKVGEAEIEYKELKAESEDSTRRFETI 349 (403)
Q Consensus 299 ~~~~~~~~l~~k~~~l~kl~---------~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i 349 (403)
++..+...+.....++..|. ..+.+++..+..++..++.+++.+-.+|..+
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443 2355688888888888988888888888654
No 61
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=62.22 E-value=75 Score=27.19 Aligned_cols=43 Identities=9% Similarity=0.097 Sum_probs=29.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFG 229 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~ 229 (403)
...|..+...+..+...++........+......++.++.++.
T Consensus 39 e~rF~~le~~~~kL~k~~k~y~~ai~~~~~~q~~~~~~l~~~y 81 (237)
T 4avm_A 39 ASNFYQQQAEGHKLYKDLKNFLSAVKVMHESSKRVSETLQEIY 81 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666777777777777767777777777777777766554
No 62
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=61.75 E-value=33 Score=23.37 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=14.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 323 DKVGEAEIEYKELKAESEDSTRRFET 348 (403)
Q Consensus 323 ~ki~~l~~~i~~~~~~~~~~~~~~~~ 348 (403)
..|+.++.+|.+.+..+..++..++.
T Consensus 40 ~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 40 ALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666665555555443
No 63
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=59.77 E-value=97 Score=30.36 Aligned_cols=158 Identities=7% Similarity=-0.002 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 043025 201 ENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYV 280 (403)
Q Consensus 201 e~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~ 280 (403)
++.++.+........+.....+.....+...+..+...-.. +..-....-......................+......
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~e~~~~~~~i~~-l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~ 505 (597)
T 3oja_B 427 TDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQ-LTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSD 505 (597)
T ss_dssp ---------------------------CCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHH
T ss_pred ccchHHHHHHHHHHHHHhhhccCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 281 RAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRF 360 (403)
Q Consensus 281 ~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f 360 (403)
..-..++.+-.+-.....+.+..++..+.+++.+++++ .++..++..+++.++.+..++++.......++.-...+
T Consensus 506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 506 NLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLE----QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHH----hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHH
Q 043025 361 QEQ 363 (403)
Q Consensus 361 ~~~ 363 (403)
...
T Consensus 582 ~~~ 584 (597)
T 3oja_B 582 NRN 584 (597)
T ss_dssp C--
T ss_pred cCC
No 64
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=59.71 E-value=90 Score=27.33 Aligned_cols=153 Identities=11% Similarity=0.089 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 241 DALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAV--------QSIKATIAERANAFRQQCELAETMKLKEI 312 (403)
Q Consensus 241 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~--------~s~k~~l~~R~~~~~~~~~~~~~l~~k~~ 312 (403)
+.+..++..+-..++.++......+..+...+.++|..+.... ..-|.+...=.++...+......+.+.+.
T Consensus 63 gs~~~aw~~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~e~~~k~~~~~kerK~~~~~~~k~~k~~~~~~~~l~kaKk 142 (290)
T 3i2w_A 63 GTTEAAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKENYHHTLMQIKERKDLEDLFKKAQKPWAKLLAKVEKAKA 142 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCEETTEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667776666777777766777777677777877776532 11122111111222233333333333333
Q ss_pred hHHHhc-----------------ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 313 NLDKLM-----------------LTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNF 375 (403)
Q Consensus 313 ~l~kl~-----------------~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~ 375 (403)
..++.- +.....+++++..++++..+++.++++|......+...-.+|. .....+-+.|+++
T Consensus 143 ~Y~~~c~e~~~a~~~~~~a~~~~~~s~k~~~K~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~-~~~p~~~~~~Q~l 221 (290)
T 3i2w_A 143 DYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQKCREKYEQAIAEITKYNSVYI-EDMTSVFEKCQTF 221 (290)
T ss_dssp HHHHHHHTTTSCC--------------------CTTSSTTTTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHH
Confidence 222211 0012234444455666677788888888887777777666664 3456666677777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043025 376 SKGQARLASSIADAWRTLL 394 (403)
Q Consensus 376 a~~qi~~~~~~~~~We~~~ 394 (403)
-+..+.+.+..+....+.+
T Consensus 222 ee~Ri~~lk~~l~~~~~~~ 240 (290)
T 3i2w_A 222 EKTRLQFFKEILFNVHSCL 240 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7777777777666555544
No 65
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=59.69 E-value=60 Score=25.30 Aligned_cols=81 Identities=14% Similarity=0.149 Sum_probs=41.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 268 LLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFE 347 (403)
Q Consensus 268 ~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~ 347 (403)
+...|...+.+-..-.+.++..++.-..+...+..++.+++..+.+|..|....|+- .+++..++++..++-.++...+
T Consensus 46 lS~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~Y-ak~~a~~~q~~~d~~~~~~~~~ 124 (158)
T 3tul_A 46 VSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPADPGY-AQAEAAVEQAGKEATEAKEALD 124 (158)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCcch-HHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555666666666666666677777777777766666665443321 2333444444444444444444
Q ss_pred HH
Q 043025 348 TI 349 (403)
Q Consensus 348 ~i 349 (403)
..
T Consensus 125 kA 126 (158)
T 3tul_A 125 KA 126 (158)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 66
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=55.91 E-value=1e+02 Score=26.68 Aligned_cols=48 Identities=8% Similarity=0.101 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 192 KLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE 239 (403)
Q Consensus 192 ~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e 239 (403)
.++..+..++..+..+.+...++++.-+.+..+...++.+...++..-
T Consensus 18 ~FR~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L 65 (265)
T 2q12_A 18 QTRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLL 65 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888889999999999999999999999988888887777775543
No 67
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=54.03 E-value=3.7e+02 Score=32.63 Aligned_cols=73 Identities=18% Similarity=0.339 Sum_probs=37.1
Q ss_pred chHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-------------HHHH-
Q 043025 323 DKVGEAEIEYKEL-------KAESEDSTRRFETIVRL---MNEEIVRFQEQKTLDMGIAFHN-------------FSKG- 378 (403)
Q Consensus 323 ~ki~~l~~~i~~~-------~~~~~~~~~~~~~i~~~---~~~El~~f~~~r~~~l~~~l~~-------------~a~~- 378 (403)
++++.++++++++ +.+++.++.+++...+. +..|-.||... ...|+..+.. |+-.
T Consensus 2042 ~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~-~~~l~~~~~~L~GD~LLaaafisY~G~f 2120 (3245)
T 3vkg_A 2042 KSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQ-SENFNTQMSTVVGDVVLASAFLAYIGFF 2120 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHH-HHHHHHHHHhccHHHHHHHHHHHHcCCC
Confidence 4455555444443 33344444444443333 55677788754 3445443333 2211
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043025 379 QARLASSIADAWRTLLPK 396 (403)
Q Consensus 379 qi~~~~~~~~~We~~~~~ 396 (403)
.-.|=+.+++.|...+..
T Consensus 2121 ~~~~R~~l~~~W~~~l~~ 2138 (3245)
T 3vkg_A 2121 DQNFRTDLMRKWMIRLDS 2138 (3245)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 124446778889888754
No 68
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=53.29 E-value=1.3e+02 Score=28.53 Aligned_cols=70 Identities=13% Similarity=0.123 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 283 VQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLM 353 (403)
Q Consensus 283 ~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~ 353 (403)
++.+.++-..|..++.+.+.++...+..-.++.+++... +..+++..+..++..++..++.....+...+
T Consensus 30 ~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 30 VDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKG-EPVDELLAKSREIVKRIGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555566666666655444444444433222 2334455555555555555555544444333
No 69
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=52.87 E-value=1.2e+02 Score=26.78 Aligned_cols=66 Identities=8% Similarity=0.142 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 327 EAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTL 393 (403)
Q Consensus 327 ~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~ 393 (403)
+++..+.++..++..++++|......+...-.+|.. ....+-+.|+++=...+.+.++.+......
T Consensus 196 K~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~-~~~~~~~~~Q~lee~Rl~~lk~~l~~~~~~ 261 (312)
T 3abh_A 196 KLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYME-NMEQVFEQCQQFEEKRLRFFREVLLEVQKH 261 (312)
T ss_dssp GGGTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666777788877766655555455532 233333344444444455555544444443
No 70
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=52.82 E-value=65 Score=26.22 Aligned_cols=42 Identities=12% Similarity=0.227 Sum_probs=25.8
Q ss_pred HHHHHHHHHhHHHhc---ccCcchHHHHHHHHHHHHHHHHHHHHH
Q 043025 304 AETMKLKEINLDKLM---LTRSDKVGEAEIEYKELKAESEDSTRR 345 (403)
Q Consensus 304 ~~~l~~k~~~l~kl~---~~~~~ki~~l~~~i~~~~~~~~~~~~~ 345 (403)
..++..++.++..|- ..++.++.++..+|.++..++...+.+
T Consensus 91 r~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k 135 (175)
T 3lay_A 91 RQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVK 135 (175)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555554 235568888888888887766554444
No 71
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=52.22 E-value=1.4e+02 Score=28.74 Aligned_cols=28 Identities=0% Similarity=-0.002 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 209 KHAYRLVKRHRELGESLSDFGKAAKLLG 236 (403)
Q Consensus 209 k~~~~l~k~~~~l~~~~~~l~~~~~~l~ 236 (403)
..-..|.+..+++...+.+|-..+..+.
T Consensus 50 rLQglLdkqErDltkrINELKnqLEdls 77 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKLKNSLFEYQ 77 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred chhhhHHhhcCcHHHHHHHHHHHHHHHH
Confidence 3444566677777777777777776663
No 72
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=51.58 E-value=1.6e+02 Score=27.77 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=14.2
Q ss_pred EeeccchHHHHHHHHHhh
Q 043025 64 VIRRYSDFVWLRDRLFEK 81 (403)
Q Consensus 64 v~RRysdF~~L~~~L~~~ 81 (403)
+...+.||..+-..|...
T Consensus 139 ~P~Twdel~~~a~~l~~~ 156 (471)
T 3mq9_A 139 PPKTWEEIPALDKELKAK 156 (471)
T ss_dssp CCSBGGGHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhC
Confidence 456889999988888764
No 73
>3qf7_D MRE11; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima}
Probab=51.12 E-value=14 Score=22.02 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043025 367 DMGIAFHNFSKGQARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 367 ~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~ 400 (403)
|+-..|++|+....+-+++.+.+++.++..++..
T Consensus 8 d~felfkey~k~r~~~he~l~k~~~ell~evkks 41 (50)
T 3qf7_D 8 DYFELFKEYLKKREENHEKLLKILDELLDEVKKS 41 (50)
T ss_dssp CHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 4567889999999999999999999999988754
No 74
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=50.58 E-value=1.3e+02 Score=28.78 Aligned_cols=66 Identities=12% Similarity=0.069 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 285 SIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVR 351 (403)
Q Consensus 285 s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~ 351 (403)
.+.++-..|..++.+.+.++...+..-.++.+++...+ ..+.+..+..++..++..++..+..+..
T Consensus 34 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~-~~~~l~~~~~~l~~~i~~le~~~~~~~~ 99 (485)
T 3qne_A 34 EIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKE-DAKDLIAEKEKLSNEKKEIIEKEAEADK 99 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555544433333333332222 2334444444444444444444444433
No 75
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=47.75 E-value=1.4e+02 Score=25.88 Aligned_cols=53 Identities=13% Similarity=0.203 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhh
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGE-------SLSDFGKAAKLLGACE 239 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~-------~~~~l~~~~~~l~~~e 239 (403)
.+-|+++-..-.+|+.++..+...+.......+.++. +-.++|.+|..++...
T Consensus 30 ~P~~e~lv~~g~ky~~al~~~~~a~~af~Da~qKvad~A~~s~g~s~elG~~L~~i~~~h 89 (253)
T 2d1l_A 30 YPVWEDFINKAGKLQSQLRTTVVAAAAFLDAFQKVADMATNTRGGTREIGSALTRMCMRH 89 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCcchHHHHHHHHHHHHHH
Confidence 6677888888888888888888777777777666655 4678888888887654
No 76
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=45.69 E-value=1.3e+02 Score=29.08 Aligned_cols=27 Identities=4% Similarity=-0.059 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 325 VGEAEIEYKELKAESEDSTRRFETIVR 351 (403)
Q Consensus 325 i~~l~~~i~~~~~~~~~~~~~~~~i~~ 351 (403)
.+.+..+..++..++..++.....+..
T Consensus 118 ~~~l~~~~~~l~~~i~~l~~~~~~~~~ 144 (501)
T 1wle_A 118 YQSLRARGREIRKQLTLLYPKEAQLEE 144 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555444444444433
No 77
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=45.59 E-value=1.5e+02 Score=25.81 Aligned_cols=49 Identities=10% Similarity=0.117 Sum_probs=22.9
Q ss_pred HhhhHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHhc
Q 043025 270 MNFEEPL-KDYVRAVQSIKATIA-ERANAFRQQCELAETMKLKEINLDKLM 318 (403)
Q Consensus 270 ~~~~e~l-~~~~~~~~s~k~~l~-~R~~~~~~~~~~~~~l~~k~~~l~kl~ 318 (403)
..+.+.| .+...-+..+..-+. .|......+..++..+.+....++|.+
T Consensus 93 ~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK 143 (305)
T 2efl_A 93 EVISENMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSK 143 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 333333333333333 333344556666666655555555554
No 78
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=44.66 E-value=41 Score=18.86 Aligned_cols=22 Identities=14% Similarity=0.101 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043025 325 VGEAEIEYKELKAESEDSTRRF 346 (403)
Q Consensus 325 i~~l~~~i~~~~~~~~~~~~~~ 346 (403)
+.++++.++++-.+...++++.
T Consensus 2 MnQLEdKVEell~~~~~le~EV 23 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEI 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHH
Confidence 3444444444444444444433
No 79
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=41.58 E-value=49 Score=18.93 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFE 347 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~ 347 (403)
++.++++.++++-.+...++++..
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~ 25 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVA 25 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHH
Confidence 344555555554444444444433
No 80
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=39.14 E-value=1.2e+02 Score=25.46 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 325 VGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQ 363 (403)
Q Consensus 325 i~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~ 363 (403)
++.++.++.+++..+..+..+|+.+.+.+..|.......
T Consensus 68 l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~ 106 (213)
T 4ani_A 68 IAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKY 106 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555566666666666666665555443
No 81
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=39.09 E-value=2.3e+02 Score=25.93 Aligned_cols=47 Identities=9% Similarity=0.123 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043025 192 KLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGAC 238 (403)
Q Consensus 192 ~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~ 238 (403)
.++..+..++..+..+.+...++++.-+.+..+..+++.+...++..
T Consensus 18 ~FR~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~ 64 (385)
T 2q13_A 18 QTRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKL 64 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888899999999999999999888888888887777777643
No 82
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=38.30 E-value=73 Score=20.09 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 325 VGEAEIEYKELKAESEDSTRRFETIVRLM 353 (403)
Q Consensus 325 i~~l~~~i~~~~~~~~~~~~~~~~i~~~~ 353 (403)
+.+++.+|..++.++...+.++..++..+
T Consensus 14 V~KLek~ID~LEdeL~~eKek~~~i~~eL 42 (52)
T 2z5i_A 14 VARLKKLVDDLEDELYAQKLKYKAISEEL 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34444555555555555555554444433
No 83
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=37.49 E-value=1.3e+02 Score=28.34 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCc------chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 283 VQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRS------DKVGEAEIEYKELKAESEDSTRRFETI 349 (403)
Q Consensus 283 ~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~------~ki~~l~~~i~~~~~~~~~~~~~~~~i 349 (403)
++.+.++-..|..++.+.+.++..-+..-.++.+++...+ .++..+..+|..++.++..+++++..+
T Consensus 29 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 2dq3_A 29 VDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNT 101 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666666666554443333333332211 234555566666666666555555443
No 84
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=37.33 E-value=6.5e+02 Score=30.64 Aligned_cols=27 Identities=15% Similarity=0.046 Sum_probs=12.4
Q ss_pred CcEEEEEcCceEeC-----CCCcceEEEEEEE
Q 043025 24 PYLSVSVTDPVKLG-----NGVQAYISYRVIT 50 (403)
Q Consensus 24 ~~~~v~V~~~~~~~-----~~~~~~~~y~i~~ 50 (403)
..+-|-|.+..+.. .-+..|.+|.|.+
T Consensus 1648 haLLVGvgGSGkqSLtrLAa~i~~~~vfqi~i 1679 (3245)
T 3vkg_A 1648 HALLIGVSGGGKSVLSRFVAWMNGLSIYTIKV 1679 (3245)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHTTCEEECCC-
T ss_pred CeEEecCCCCcHHHHHHHHHHHhCCeeEEEee
Confidence 34555555444331 1123466666654
No 85
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=37.29 E-value=22 Score=17.82 Aligned_cols=12 Identities=33% Similarity=0.653 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHH
Q 043025 108 MRRQGLDLFVNR 119 (403)
Q Consensus 108 ~R~~~L~~fl~~ 119 (403)
.|+..|++||..
T Consensus 5 aRk~SLqRFleK 16 (21)
T 3ogl_Q 5 ARRASLHRFLEK 16 (26)
T ss_pred hHHHHHHHHHHH
Confidence 478888888875
No 86
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=37.23 E-value=1.1e+02 Score=21.54 Aligned_cols=10 Identities=20% Similarity=0.255 Sum_probs=5.1
Q ss_pred HHHHHHHHHH
Q 043025 289 TIAERANAFR 298 (403)
Q Consensus 289 ~l~~R~~~~~ 298 (403)
.|..|..+.-
T Consensus 21 aFgKrEaA~E 30 (84)
T 1gmj_A 21 AFGKREQAEE 30 (84)
T ss_dssp HHHHHHHHHH
T ss_pred CcccHHHHhH
Confidence 4555555543
No 87
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=36.63 E-value=77 Score=19.75 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 043025 292 ERANAFRQQCELAETMKLKEINL 314 (403)
Q Consensus 292 ~R~~~~~~~~~~~~~l~~k~~~l 314 (403)
+|..++.++..+.+.....+.++
T Consensus 7 rr~e~ld~l~~LEkqF~~LkEql 29 (49)
T 2xus_A 7 RRSECVSEMLDLEKQFSELKEKL 29 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666655544444443
No 88
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=36.23 E-value=70 Score=19.13 Aligned_cols=26 Identities=4% Similarity=0.169 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETI 349 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i 349 (403)
+++.+..+|.+.++++..++.+...+
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555554443
No 89
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=35.41 E-value=64 Score=18.46 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 325 VGEAEIEYKELKAESEDSTRRFET 348 (403)
Q Consensus 325 i~~l~~~i~~~~~~~~~~~~~~~~ 348 (403)
+.+++++++++-.+...++++...
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~R 26 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVAR 26 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHH
Confidence 445555555554444444444333
No 90
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=34.21 E-value=3.2e+02 Score=26.24 Aligned_cols=24 Identities=8% Similarity=0.231 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 275 PLKDYVRAVQSIKATIAERANAFR 298 (403)
Q Consensus 275 ~l~~~~~~~~s~k~~l~~R~~~~~ 298 (403)
.+...+..+.+++..|.+-...++
T Consensus 125 kVdnQlsnIrvLQsnLedq~~kIQ 148 (562)
T 3ghg_A 125 KVIEKVQHIQLLQKNVRAQLVDMK 148 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555554444433333
No 91
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=33.30 E-value=73 Score=27.57 Aligned_cols=11 Identities=0% Similarity=-0.360 Sum_probs=5.1
Q ss_pred HHHHHHHHHHh
Q 043025 111 QGLDLFVNRIA 121 (403)
Q Consensus 111 ~~L~~fl~~~~ 121 (403)
..++.||..++
T Consensus 52 ~iy~~~l~~~~ 62 (250)
T 2ve7_C 52 MIYMRALQIVY 62 (250)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 44444544444
No 92
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=32.59 E-value=3e+02 Score=25.34 Aligned_cols=53 Identities=13% Similarity=0.199 Sum_probs=38.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhh
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGES-LSDFGKAAKLLGACE 239 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~-~~~l~~~~~~l~~~e 239 (403)
+..+.+..+.++.+...++.+......+.+....+... ...++..+..++..-
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~r~~~~~~~e~~~l~~~l 233 (386)
T 4akv_A 180 HQDLQDVEDRVDTFKAFSKKMDDSVLQLSTVASELVRKHVGGFRKEFQKLGSAF 233 (386)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 56788888999999888988888888777766666554 345566665555443
No 93
>2lkw_A Membrane fusion protein P15; viral protein; NMR {Baboon orthoreovirus}
Probab=32.30 E-value=32 Score=17.43 Aligned_cols=14 Identities=14% Similarity=0.672 Sum_probs=9.1
Q ss_pred CCCCCCCCcEEEEE
Q 043025 17 PRSPSSQPYLSVSV 30 (403)
Q Consensus 17 ~~~~~~~~~~~v~V 30 (403)
||+|.++.++.|..
T Consensus 10 ppapppnafvei~~ 23 (26)
T 2lkw_A 10 PPAPPPNAFVEIXX 23 (26)
T ss_pred CCCcCCCeeEEEEe
Confidence 55566777777654
No 94
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=31.40 E-value=1e+02 Score=19.51 Aligned_cols=13 Identities=8% Similarity=0.238 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 043025 328 AEIEYKELKAESE 340 (403)
Q Consensus 328 l~~~i~~~~~~~~ 340 (403)
|..++..+...++
T Consensus 23 LssdV~al~~~v~ 35 (52)
T 1jcd_A 23 ASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 95
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=31.39 E-value=73 Score=17.93 Aligned_cols=25 Identities=4% Similarity=0.121 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFET 348 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~ 348 (403)
++.++++.++++-.+-..++++...
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~R 26 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXAR 26 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3445555555544444444444333
No 96
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=31.32 E-value=2.5e+02 Score=23.99 Aligned_cols=43 Identities=14% Similarity=0.079 Sum_probs=32.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFG 229 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~ 229 (403)
...|......+..+...++........+......++.++.++.
T Consensus 44 e~~F~~le~~~~kL~k~~k~y~~ai~~~~~~q~~~ae~l~~ly 86 (243)
T 4a3a_A 44 VQNFKRQEAEGTRLQRELRGYLAAIKGMQEASMKLTESLHEVY 86 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5677777777777777777777777777777777777777763
No 97
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=31.28 E-value=1.3e+02 Score=20.76 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043025 328 AEIEYKELKAESEDSTRRFETI 349 (403)
Q Consensus 328 l~~~i~~~~~~~~~~~~~~~~i 349 (403)
++.+|..++..++.++.+++..
T Consensus 39 ~E~ev~~L~kKiq~lE~eld~~ 60 (81)
T 1ic2_A 39 LEDELVALQKKLKGTEDELDKY 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 98
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=30.88 E-value=82 Score=18.36 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=17.6
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 043025 319 LTRSDKVGEAEIEYKELKAESEDSTRRF 346 (403)
Q Consensus 319 ~~~~~ki~~l~~~i~~~~~~~~~~~~~~ 346 (403)
|-.++.+..++.+++.++.++..++.++
T Consensus 16 gfspeelaaleselqalekklaalkskl 43 (48)
T 1g6u_A 16 GFSPEELAALESELQALEKKLAALKSKL 43 (48)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777766665555443
No 99
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=30.75 E-value=2.4e+02 Score=26.35 Aligned_cols=65 Identities=11% Similarity=0.014 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccc-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 284 QSIKATIAERANAFRQQCELAETMKLKEINLDKLMLT-RSDKVGEAEIEYKELKAESEDSTRRFETIVRL 352 (403)
Q Consensus 284 ~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~-~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~ 352 (403)
+.+.++-..|..+..+.+.++...+ .+.|.-+. ..+..+++..+..++..++..++.....+...
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n----~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERN----QVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEAR 93 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555444322 22222121 11223444445555555555444444444333
No 100
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=30.53 E-value=1e+02 Score=19.45 Aligned_cols=31 Identities=13% Similarity=0.152 Sum_probs=19.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 322 SDKVGEAEIEYKELKAESEDSTRRFETIVRL 352 (403)
Q Consensus 322 ~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~ 352 (403)
..-++.++.+..++..+++.+....+..+..
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777766666666555443
No 101
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=30.28 E-value=3.3e+02 Score=25.07 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 188 PEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLS 226 (403)
Q Consensus 188 ~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~ 226 (403)
.....++.+++++....+.+......+......++..+.
T Consensus 51 ~~~~~l~~~l~kl~k~~~~~~~~~~~~~~a~~~f~~~l~ 89 (407)
T 4h8s_A 51 EDAGTLTDYTNQLLQAMQRVYGAQNEMCLATQQLSKQLL 89 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666555555555555555555555553
No 102
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=29.77 E-value=71 Score=17.27 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 328 AEIEYKELKAESEDSTRRFETIVR 351 (403)
Q Consensus 328 l~~~i~~~~~~~~~~~~~~~~i~~ 351 (403)
++.++..++.-+++++++++.+..
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555443
No 103
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=29.31 E-value=81 Score=17.81 Aligned_cols=23 Identities=9% Similarity=0.173 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043025 325 VGEAEIEYKELKAESEDSTRRFE 347 (403)
Q Consensus 325 i~~l~~~i~~~~~~~~~~~~~~~ 347 (403)
+.++++.++++-.+-..+.++..
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~ 25 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELA 25 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHHHH
Confidence 44455555554444434444333
No 104
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=28.14 E-value=3.4e+02 Score=29.29 Aligned_cols=13 Identities=8% Similarity=-0.136 Sum_probs=7.6
Q ss_pred ceEEeeccchHHH
Q 043025 61 EKIVIRRYSDFVW 73 (403)
Q Consensus 61 ~~~v~RRysdF~~ 73 (403)
+|.++..|.+|..
T Consensus 719 Gfp~R~~~~~F~~ 731 (1184)
T 1i84_S 719 GFPNRIVFQEFRQ 731 (1184)
T ss_dssp SCCEEEEHHHHHH
T ss_pred cCcccccHHHHHH
Confidence 3555666666654
No 105
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=27.07 E-value=1.8e+02 Score=20.99 Aligned_cols=11 Identities=27% Similarity=0.601 Sum_probs=7.2
Q ss_pred HHHHHHHHHHH
Q 043025 353 MNEEIVRFQEQ 363 (403)
Q Consensus 353 ~~~El~~f~~~ 363 (403)
+..||..|.+.
T Consensus 83 L~~eLe~F~~~ 93 (96)
T 1t3j_A 83 LESELENFSKQ 93 (96)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56677777654
No 106
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=26.96 E-value=3.7e+02 Score=24.64 Aligned_cols=26 Identities=0% Similarity=-0.017 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043025 213 RLVKRHRELGESLSDFGKAAKLLGAC 238 (403)
Q Consensus 213 ~l~k~~~~l~~~~~~l~~~~~~l~~~ 238 (403)
.|.+..+++...+.+|-..+..+...
T Consensus 57 ~Ldk~er~~~~rIe~L~~~L~~~s~s 82 (390)
T 1deq_A 57 LIDEVDQDFTSRINKLRDSLFNYQKN 82 (390)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 34455566666666666666655443
No 107
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=26.94 E-value=22 Score=18.13 Aligned_cols=9 Identities=33% Similarity=0.623 Sum_probs=4.6
Q ss_pred HHHHHHHHH
Q 043025 110 RQGLDLFVN 118 (403)
Q Consensus 110 ~~~L~~fl~ 118 (403)
+..|++||.
T Consensus 2 k~SLqRFle 10 (22)
T 3ogk_Q 2 RASLHRFLE 10 (26)
T ss_pred chhHHHHHH
Confidence 344555554
No 108
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=26.03 E-value=4e+02 Score=28.74 Aligned_cols=15 Identities=7% Similarity=0.000 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 043025 193 LKHYIFELENHLAEA 207 (403)
Q Consensus 193 ~~~~i~~le~~l~~l 207 (403)
....+..++..+..+
T Consensus 862 L~~eL~el~~~L~~l 876 (1184)
T 1i84_S 862 KDEELQRTKERQQKA 876 (1184)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333344433333
No 109
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=25.78 E-value=2.3e+02 Score=21.87 Aligned_cols=7 Identities=71% Similarity=0.857 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 043025 331 EYKELKA 337 (403)
Q Consensus 331 ~i~~~~~ 337 (403)
++.++..
T Consensus 111 e~~~l~~ 117 (138)
T 3hnw_A 111 EIKELKS 117 (138)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 110
>1s28_A ORF1; type III chaperone; 3.00A {Pseudomonas syringae PV} SCOP: d.198.1.1
Probab=25.73 E-value=40 Score=25.66 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=20.4
Q ss_pred chHHHHHHHHHhhcCCccCCCCCCCc
Q 043025 69 SDFVWLRDRLFEKYKGIFIPPLPEKS 94 (403)
Q Consensus 69 sdF~~L~~~L~~~~p~~~iP~lP~k~ 94 (403)
+.|..|-+.|.+.|+ .|++|+|+
T Consensus 5 n~fd~lid~laK~Y~---mP~~P~kk 27 (132)
T 1s28_A 5 NSFDRLIDGLAKDYG---MPGFPEKK 27 (132)
T ss_dssp HHHHHHHHHHHHHHC---CCBCCCCC
T ss_pred hhHHHHHHHHHHhcC---CCCCCccc
Confidence 468999999999998 89999994
No 111
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=25.63 E-value=4.2e+02 Score=24.80 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=15.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 323 DKVGEAEIEYKELKAESEDSTRRFE 347 (403)
Q Consensus 323 ~ki~~l~~~i~~~~~~~~~~~~~~~ 347 (403)
.|+++++.+|.+++++++.++...+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666667777776666666655543
No 112
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=25.31 E-value=2.1e+02 Score=21.29 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=18.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 323 DKVGEAEIEYKELKAESEDSTRRFETIV 350 (403)
Q Consensus 323 ~ki~~l~~~i~~~~~~~~~~~~~~~~i~ 350 (403)
+.|..+..+++++..+++.++.......
T Consensus 78 gEI~~Lnq~Lq~a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 78 GEITTLNHKLQDASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 5566666677777777777776665443
No 113
>2kx2_A MTH1821, putative uncharacterized protein; structural genomics, U function, structural genomics consortium, SGC; NMR {Methanobacterium thermoautotrophicum}
Probab=24.81 E-value=39 Score=23.89 Aligned_cols=79 Identities=23% Similarity=0.257 Sum_probs=48.4
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCC--------ccCCCCCCCccc
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG--------IFIPPLPEKSAV 96 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~--------~~iP~lP~k~~~ 96 (403)
++.|.|.|.....++...|++|.|..-. ...++.|..+.-+ .+|--.=+|..|
T Consensus 4 ~m~Vkv~DyG~~~d~~~~yV~y~vsgl~-------------------e~~~~kL~~~le~~~~~~ng~L~it~~f~keyF 64 (96)
T 2kx2_A 4 YLKVKVEDFGFREDMGLNYVRYRVSGLD-------------------EELTEKLIERLDEDTERDDGDLIITVFYEREYF 64 (96)
T ss_dssp CCCCEEEEEEEETTTTEEEEEEEEESCC-------------------HHHHHHHHHHHCSEEEEETTEEEEECCBCGGGC
T ss_pred EEEEEEEEcCcCCCCcceEEEEEecCCC-------------------HHHHHHHHHhccCceEEecCcEEEEEEeeeccc
Confidence 5678999998887776689999997532 1234445544432 334333333333
Q ss_pred cc-----cCCCHHHHHHHHHHHHHHHHHHhc
Q 043025 97 EK-----FRFSAEFIEMRRQGLDLFVNRIAS 122 (403)
Q Consensus 97 ~~-----~~~~~~~i~~R~~~L~~fl~~~~~ 122 (403)
.. .-..++||..--..+--||..++.
T Consensus 65 PFgS~eak~k~dDFIaREEIEM~vfLsS~LE 95 (96)
T 2kx2_A 65 PFGSEESKVKMADFIAREEIEMMVFLSSVLE 95 (96)
T ss_dssp CSCCHHHHTSTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhhcccHHHhhhhhhhhhhhhhhHHhc
Confidence 20 012578888777777788877653
No 114
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=24.78 E-value=6.6e+02 Score=26.79 Aligned_cols=166 Identities=15% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 043025 204 LAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAV 283 (403)
Q Consensus 204 l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~ 283 (403)
++.-.+....+.+....|.+.+.+|-..+... ..-...+..-.....................+.....+....-
T Consensus 909 Lk~ear~~~~l~~~~~~LE~kl~eLq~rL~~~-----e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~ 983 (1080)
T 2dfs_A 909 LKIEARSVERYKKLHIGLENKIMQLQRKIDEQ-----NKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNAT 983 (1080)
T ss_dssp C----------------------------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 284 QSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQ 363 (403)
Q Consensus 284 ~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~ 363 (403)
..++.+-.+-...-.+++.+.+..+..++..++++..-++|+..++.+...+++++++++.....-.+.+..++..=...
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~~~~~~~~~~~~~ 1063 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVE 1063 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 043025 364 KTLDMGIAFHN 374 (403)
Q Consensus 364 r~~~l~~~l~~ 374 (403)
....+..-+.+
T Consensus 1064 ~~~~~~~~~~~ 1074 (1080)
T 2dfs_A 1064 ETKQLELDLND 1074 (1080)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
No 115
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=23.94 E-value=1e+02 Score=17.27 Aligned_cols=11 Identities=27% Similarity=0.341 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 043025 327 EAEIEYKELKA 337 (403)
Q Consensus 327 ~l~~~i~~~~~ 337 (403)
+++++++++-.
T Consensus 4 QLE~kVEeLl~ 14 (33)
T 3m48_A 4 QLEAKVEELLS 14 (33)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344443333
No 116
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=23.22 E-value=2.3e+02 Score=21.03 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043025 335 LKAESEDSTRRFETIVRLMNEE 356 (403)
Q Consensus 335 ~~~~~~~~~~~~~~i~~~~~~E 356 (403)
.++++++++.+|+.....+..|
T Consensus 66 ~e~E~ae~k~KYD~~lqe~ese 87 (115)
T 3vem_A 66 LERKMAEVQAEFRRKFHEVEAE 87 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666544444333
No 117
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=23.17 E-value=1.1e+02 Score=17.27 Aligned_cols=20 Identities=10% Similarity=-0.014 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043025 326 GEAEIEYKELKAESEDSTRR 345 (403)
Q Consensus 326 ~~l~~~i~~~~~~~~~~~~~ 345 (403)
.+++++++++-.+-..++++
T Consensus 4 ~QLEdKVEeLl~~n~~Le~E 23 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENE 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHH
Confidence 34444444443333333333
No 118
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=22.56 E-value=4.4e+02 Score=23.93 Aligned_cols=52 Identities=8% Similarity=0.061 Sum_probs=36.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGES-LSDFGKAAKLLGAC 238 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~-~~~l~~~~~~l~~~ 238 (403)
+..+.+..+.++.+...++.+......+.+....++.. ...++.....++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (366)
T 3dyt_A 160 DLDLVEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKA 212 (366)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45678888888888888888888887777777666654 34555555555443
No 119
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=22.47 E-value=1.1e+02 Score=17.09 Aligned_cols=20 Identities=10% Similarity=0.141 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043025 326 GEAEIEYKELKAESEDSTRR 345 (403)
Q Consensus 326 ~~l~~~i~~~~~~~~~~~~~ 345 (403)
.++++.++++-.+-..++++
T Consensus 3 nQLEdKvEeLl~~~~~Le~E 22 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENX 22 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHH
Confidence 34444444444433333333
No 120
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=21.07 E-value=3.4e+02 Score=22.16 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=3.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043025 284 QSIKATIAERANAFRQQC 301 (403)
Q Consensus 284 ~s~k~~l~~R~~~~~~~~ 301 (403)
.++++-+...+.+...+.
T Consensus 9 ~~~q~ql~~ad~LV~~L~ 26 (190)
T 4emc_A 9 NSVKQQIDSADLLVANLV 26 (190)
T ss_dssp -----------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555544433
No 121
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=21.04 E-value=5.2e+02 Score=24.26 Aligned_cols=20 Identities=25% Similarity=0.210 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 043025 219 RELGESLSDFGKAAKLLGAC 238 (403)
Q Consensus 219 ~~l~~~~~~l~~~~~~l~~~ 238 (403)
..++..+.+|-.+++.++..
T Consensus 40 ~gl~~~l~~ff~alq~la~~ 59 (463)
T 2d4y_A 40 SSLSGSLQSFFTSLQTLVSN 59 (463)
T ss_dssp TCHHHHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHhC
Confidence 45777788888888877754
No 122
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=21.01 E-value=2.6e+02 Score=20.66 Aligned_cols=12 Identities=25% Similarity=0.188 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 043025 334 ELKAESEDSTRR 345 (403)
Q Consensus 334 ~~~~~~~~~~~~ 345 (403)
-+++.++..+.+
T Consensus 66 vLkaQv~IY~~D 77 (110)
T 2v4h_A 66 VLKAQADIYKAD 77 (110)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 123
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=20.73 E-value=5.2e+02 Score=24.08 Aligned_cols=144 Identities=12% Similarity=0.126 Sum_probs=0.0
Q ss_pred CCCcchHHHHHHhhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 155 KKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKL 234 (403)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~ 234 (403)
+.++.+...++.-+.+...++ +.-+.++++.++.++....++.+...........+.+.+.++...+..
T Consensus 227 ~~s~~e~~elleVv~~Da~EL-----------~~V~~eL~~~~~~i~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~ 295 (413)
T 4hpq_C 227 SVSPEDAQNLFEIVERDDKDL-----------AAINSLLQDAAIDVASFVRKVNMLLDERDADKAKMQATLSKLLTELRK 295 (413)
T ss_dssp SCCSSHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHhHHHHHHHHHcchhhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 043025 235 LGACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINL 314 (403)
Q Consensus 235 l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l 314 (403)
+ ...-.++..++..+....... ......+.+--..|.++..|++.+|-.-+.-..-......-+.+.+.++
T Consensus 296 ~-----~e~l~i~~~i~e~l~~fk~~~----~~~~~~~~~L~~~Y~~f~~aY~~lL~Ev~RRr~~~~~~~~i~~~~~~~L 366 (413)
T 4hpq_C 296 H-----EEYISVFEGISALIQKFKASC----LEDIRQTRNLLDFYANFERSYHNLLKEVKRRKETAAKLSQILKSCETQL 366 (413)
T ss_dssp H-----HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h-----HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhc
Q 043025 315 DKLM 318 (403)
Q Consensus 315 ~kl~ 318 (403)
+++.
T Consensus 367 ~~l~ 370 (413)
T 4hpq_C 367 EQIN 370 (413)
T ss_dssp HHHH
T ss_pred HHHH
No 124
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=20.27 E-value=3.2e+02 Score=21.48 Aligned_cols=64 Identities=5% Similarity=0.102 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhh
Q 043025 330 IEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKG---QARLASSIADAWRTLLPKLE 398 (403)
Q Consensus 330 ~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~---qi~~~~~~~~~We~~~~~~~ 398 (403)
.+-+++...++++...+...+..+..|+..=. .+..+|.+|... ++.-.+..++...+.+..+.
T Consensus 68 ~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~-----~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~ 134 (152)
T 4fla_A 68 EAAERLSKTVDEACLLLAEYNGRLAAELEDRR-----QLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVT 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888888999998887543 334444444444 44444555555555544443
Done!