BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043027
(199 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z3Q|A Chain A, Resolution Of The Structure Of The Allergenic And
Antifungal Banana Fruit Thaumatin-Like Protein At 1.7a
Length = 200
Score = 238 bits (606), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 114/201 (56%), Positives = 143/201 (71%), Gaps = 6/201 (2%)
Query: 2 FEIQNNCIYTVWAAANPGGGKELHQHQSWHINL---TDAGSIWARTNCNFSADGTGNCES 58
FEI N C YTVWAAA PGGG++L+Q QSW IN+ T G IW RT C+F G G C++
Sbjct: 3 FEIVNRCSYTVWAAAVPGGGRQLNQGQSWTINVNAGTTGGRIWGRTGCSFDGSGRGRCQT 62
Query: 59 GDCDGVLNCASDSSPPVTLAEYSLNVSKNFDLFNLSLMNGFNIPMEFKGTSSMCTQVIKC 118
GDC GVL+C + +PP TLAE++LN N D F++SL++GFN+PM+F TS C + I+C
Sbjct: 63 GDCGGVLSCTAYGNPPNTLAEFALNQFNNLDFFDISLVDGFNVPMDFSPTSGGC-RGIRC 121
Query: 119 AGDINGLCPNELRHPGGCNNPCTLFKNDQFCCNVDRRSCGATAYSKFFKNLCPNVYTYPM 178
A DING CP L+ PGGCNNPCT+FK DQ+CCN +C T YS+FFK CP+ Y+YP
Sbjct: 122 AADINGQCPGALKAPGGCNNPCTVFKTDQYCCNSG--ACSPTDYSQFFKRNCPDAYSYPK 179
Query: 179 DDPASTLACPTGTGYKVVFCP 199
DD +T CP GT Y+VVFCP
Sbjct: 180 DDQTTTFTCPGGTNYRVVFCP 200
>pdb|4H8T|A Chain A, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
pdb|4H8T|B Chain B, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
Length = 198
Score = 230 bits (587), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 110/202 (54%), Positives = 139/202 (68%), Gaps = 8/202 (3%)
Query: 1 AFEIQNNCIYTVWAAANPGGGKELHQHQSWHINL---TDAGSIWARTNCNFSADGTGNCE 57
F+I N C YTVWAAA+PGGG+ L QSW I + T IW RT+C F A+G G CE
Sbjct: 2 TFDILNKCTYTVWAAASPGGGRRLDSGQSWTITVNPGTTNARIWGRTSCTFDANGRGKCE 61
Query: 58 SGDCDGVLNCASDSSPPVTLAEYSLNVSKNFDLFNLSLMNGFNIPMEFKGTSSMCTQVIK 117
+GDC+G+L C SPP TLAE++LN N D ++SL++GFNIPM+F G + I+
Sbjct: 62 TGDCNGLLECQGYGSPPNTLAEFALNQPNNLDYIDISLVDGFNIPMDFSGC-----RGIQ 116
Query: 118 CAGDINGLCPNELRHPGGCNNPCTLFKNDQFCCNVDRRSCGATAYSKFFKNLCPNVYTYP 177
C+ DING CP+EL+ PGGCNNPCT+FK +++CC SCG T YSKFFK+ CP+ Y+YP
Sbjct: 117 CSVDINGQCPSELKAPGGCNNPCTVFKTNEYCCTDGPGSCGPTTYSKFFKDRCPDAYSYP 176
Query: 178 MDDPASTLACPTGTGYKVVFCP 199
DD S CP+GT YKV FCP
Sbjct: 177 QDDKTSLFTCPSGTNYKVTFCP 198
>pdb|1PCV|A Chain A, Crystal Structure Of Osmotin, A Plant Antifungal Protein
pdb|1PCV|B Chain B, Crystal Structure Of Osmotin, A Plant Antifungal Protein
Length = 205
Score = 213 bits (542), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 108/205 (52%), Positives = 133/205 (64%), Gaps = 9/205 (4%)
Query: 2 FEIQNNCIYTVWAAANP-GGGKELHQHQSWHINL---TDAGSIWARTNCNFSADGTGNCE 57
E++NNC YTVWAA+ P GGG+ L + Q+W IN T +W RTNCNF+A G G C+
Sbjct: 3 IEVRNNCPYTVWAASTPIGGGRRLDRGQTWVINAPRGTKMARVWGRTNCNFNAAGRGTCQ 62
Query: 58 SGDCDGVLNCASDSSPPVTLAEYSLNVSKNFDLFNLSLMNGFNIPMEFKGT--SSMCTQV 115
+GDC GVL C PP TLAEY+L+ D +++SL++GFNIPM F T S
Sbjct: 63 TGDCGGVLQCTGWGKPPNTLAEYALDQFSGLDFWDISLVDGFNIPMTFAPTNPSGGKCHA 122
Query: 116 IKCAGDINGLCPNELRHPGGCNNPCTLFKNDQFCCNVDRRSCGATAYSKFFKNLCPNVYT 175
I C +ING CP ELR PGGCNNPCT F Q+CC + CG T +SKFFK CP+ Y+
Sbjct: 123 IHCTANINGECPRELRVPGGCNNPCTTFGGQQYCCT--QGPCGPTFFSKFFKQRCPDAYS 180
Query: 176 YPMDDPASTLACPTG-TGYKVVFCP 199
YP DDP ST CP G T Y+V+FCP
Sbjct: 181 YPQDDPTSTFTCPGGSTNYRVIFCP 205
>pdb|2I0W|A Chain A, Crystal Structure Analysis Of Np24-I, A Thaumatin-Like
Protein
Length = 207
Score = 211 bits (536), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 108/205 (52%), Positives = 132/205 (64%), Gaps = 9/205 (4%)
Query: 2 FEIQNNCIYTVWAAANP-GGGKELHQHQSWHINL---TDAGSIWARTNCNFSADGTGNCE 57
E++NNC YTVWAA+ P GGG+ L++ Q+W IN T IW RT CNF+A G G C+
Sbjct: 3 IEVRNNCPYTVWAASTPIGGGRRLNRGQTWVINAPRGTKMARIWGRTGCNFNAAGRGTCQ 62
Query: 58 SGDCDGVLNCASDSSPPVTLAEYSLNVSKNFDLFNLSLMNGFNIPMEFKGT--SSMCTQV 115
+GDC GVL C PP TLAEY+L+ N D +++SL++GFNIPM F T S
Sbjct: 63 TGDCGGVLQCTGWGKPPNTLAEYALDQFSNLDFWDISLVDGFNIPMTFAPTKPSGGKCHA 122
Query: 116 IKCAGDINGLCPNELRHPGGCNNPCTLFKNDQFCCNVDRRSCGATAYSKFFKNLCPNVYT 175
I C +ING CP L+ PGGCNNPCT F Q+CC + CG T SKFFK CP+ Y+
Sbjct: 123 IHCTANINGECPRALKVPGGCNNPCTTFGGQQYCCT--QGPCGPTELSKFFKKRCPDAYS 180
Query: 176 YPMDDPASTLACPTG-TGYKVVFCP 199
YP DDP ST CP G T Y+VVFCP
Sbjct: 181 YPQDDPTSTFTCPGGSTNYRVVFCP 205
>pdb|1AUN|A Chain A, Pathogenesis-Related Protein 5d From Nicotiana Tabacum
Length = 208
Score = 202 bits (515), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 105/206 (50%), Positives = 128/206 (62%), Gaps = 9/206 (4%)
Query: 1 AFEIQNNCIYTVWAAANP-GGGKELHQHQSWHINL---TDAGSIWARTNCNFSADGTGNC 56
FE+ NNC YTVWAAA P GGG+ L + QSW T IW RTNCNF G G C
Sbjct: 3 VFEVHNNCPYTVWAAATPVGGGRRLERGQSWWFWAPPGTKMARIWGRTNCNFDGAGRGWC 62
Query: 57 ESGDCDGVLNCASDSSPPVTLAEYSLNVSKNFDLFNLSLMNGFNIPMEFKGTSSMCTQV- 115
++GDC GVL C PP TLAEY+LN N D +++S+++GFNIPM F T +
Sbjct: 63 QTGDCGGVLECKGWGKPPNTLAEYALNQFSNLDFWDISVIDGFNIPMSFGPTKPGPGKCH 122
Query: 116 -IKCAGDINGLCPNELRHPGGCNNPCTLFKNDQFCCNVDRRSCGATAYSKFFKNLCPNVY 174
I+C +ING CP LR PGGCNNPCT F Q+CC + CG T S++FK CP+ Y
Sbjct: 123 GIQCTANINGECPGSLRVPGGCNNPCTTFGGQQYCCT--QGPCGPTELSRWFKQRCPDAY 180
Query: 175 TYPMDDPASTLACPTG-TGYKVVFCP 199
+YP DDP ST C + T YKV+FCP
Sbjct: 181 SYPQDDPTSTFTCTSWTTDYKVMFCP 206
>pdb|1DU5|A Chain A, The Crystal Structure Of Zeamatin.
pdb|1DU5|B Chain B, The Crystal Structure Of Zeamatin
Length = 206
Score = 202 bits (513), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 101/204 (49%), Positives = 128/204 (62%), Gaps = 6/204 (2%)
Query: 2 FEIQNNCIYTVWAAANP-GGGKELHQHQSWHINL---TDAGSIWARTNCNFSADGTGNCE 57
F + N C +TVWAA+ P GGG++L++ +SW I T A IWART C F A G G+C
Sbjct: 3 FTVVNQCPFTVWAASVPVGGGRQLNRGESWRITAPAGTTAARIWARTGCKFDASGRGSCR 62
Query: 58 SGDCDGVLNCASDSSPPVTLAEYSLNVSKNFDLFNLSLMNGFNIPMEF-KGTSSMCTQVI 116
+GDC GVL C P TLAEY+L N D F++SL++GFN+PM F S C++
Sbjct: 63 TGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSGCSRGP 122
Query: 117 KCAGDINGLCPNELRHPGGCNNPCTLFKNDQFCC-NVDRRSCGATAYSKFFKNLCPNVYT 175
+CA D+N CP ELR G CNN C +FK D++CC C T YS++FK CP+ Y+
Sbjct: 123 RCAVDVNARCPAELRQDGVCNNACPVFKKDEYCCVGSAANDCHPTNYSRYFKGQCPDAYS 182
Query: 176 YPMDDPASTLACPTGTGYKVVFCP 199
YP DD ST CP GT YKVVFCP
Sbjct: 183 YPKDDATSTFTCPAGTNYKVVFCP 206
>pdb|1THV|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|2PE7|A Chain A, Thaumatin From Thaumatococcus Danielli In Complex With
Tris- Dipicolinate Europium
pdb|3E3S|A Chain A, Structure Of Thaumatin With The Magic Triangle I3c
pdb|3AL7|A Chain A, Recombinant Thaumatin I At 1.1 A
pdb|3ALD|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin I At
1.10 A
pdb|3VHF|A Chain A, Plant Thaumatin I At Ph 8.0
pdb|3VJQ|A Chain A, Recombinant Thaumatin At Ph 8.0 With Hydrogen Atoms
pdb|3VHG|A Chain A, Recombinant Thaumatin I At Ph 8.0
pdb|3V7V|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V82|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V84|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V87|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V88|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V8A|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCE|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCG|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCH|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCI|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCJ|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCK|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|4DC5|A Chain A, Crystal Structure Of Thaumatin Unexposed To Excessive
Sonicc Imaging Laser Dose.
pdb|4DC6|A Chain A, Crystal Structure Of Thaumatin Exposed To Excessive Sonicc
Imaging Laser Dose
Length = 207
Score = 191 bits (485), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 97/208 (46%), Positives = 136/208 (65%), Gaps = 15/208 (7%)
Query: 2 FEIQNNCIYTVWAAANPG------GGKELHQHQSWHINL---TDAGSIWARTNCNFSADG 52
FEI N C YTVWAAA+ G GG++L+ +SW IN+ T+ G IWART+C F G
Sbjct: 3 FEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDDSG 62
Query: 53 TGNCESGDCDGVLNCASDSSPPVTLAEYSLNVSKNFDLFNLSLMNGFNIPMEFKGTSSMC 112
+G C++GDC G+L C PP TLAE+SLN D ++S + GFN+PM+F T+ C
Sbjct: 63 SGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGK-DYIDISNIKGFNVPMDFSPTTRGC 121
Query: 113 TQVIKCAGDINGLCPNELRHP-GGCNNPCTLFKNDQFCCNVDRRSCGATAYSKFFKNLCP 171
+ ++CA DI G CP +L+ P GGCN+ CT+F+ ++CC + CG T YS+FFK LCP
Sbjct: 122 -RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGK--CGPTEYSRFFKRLCP 178
Query: 172 NVYTYPMDDPASTLACPTGTGYKVVFCP 199
+ ++Y +D P +T+ CP + Y+V FCP
Sbjct: 179 DAFSYVLDKP-TTVTCPGSSNYRVTFCP 205
>pdb|1RQW|A Chain A, Thaumatin Structure At 1.05 A Resolution
pdb|2A7I|X Chain X, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2G4Y|A Chain A, Structure Of Thaumatin At 2.0 A Wavelength
pdb|1THU|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|1THW|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|3DZN|A Chain A, Thaumatin By Lb Nanotemplate Method Before High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZP|A Chain A, Thaumatin By Lb Nanotemplate Method After High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZR|A Chain A, Thaumatin By Classical Hanging Drop Method Before High
X-Ray Dose On Esrf Id29 Beamline
pdb|3E0A|A Chain A, Thaumatin By Classical Hanging Drop Method After High
X-Ray Dose On Esrf Id29 Beamline
pdb|4DIY|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DIZ|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DJ0|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4DJ1|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4EK0|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 25 K
pdb|4EKA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 25 K
pdb|4EKB|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 100 K
pdb|4EKH|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 100 K
pdb|4EKO|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 180 K
pdb|4EKT|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 180 K
pdb|4EL2|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 240 K
pdb|4EL3|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 240 K
pdb|4EL7|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 300 K
pdb|4ELA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 300 K
Length = 207
Score = 191 bits (485), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 97/208 (46%), Positives = 135/208 (64%), Gaps = 15/208 (7%)
Query: 2 FEIQNNCIYTVWAAANPG------GGKELHQHQSWHINL---TDAGSIWARTNCNFSADG 52
FEI N C YTVWAAA+ G GG++L+ +SW IN+ T G IWART+C F G
Sbjct: 3 FEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDDSG 62
Query: 53 TGNCESGDCDGVLNCASDSSPPVTLAEYSLNVSKNFDLFNLSLMNGFNIPMEFKGTSSMC 112
+G C++GDC G+L C PP TLAE+SLN D ++S + GFN+PM+F T+ C
Sbjct: 63 SGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGK-DYIDISNIKGFNVPMDFSPTTRGC 121
Query: 113 TQVIKCAGDINGLCPNELRHP-GGCNNPCTLFKNDQFCCNVDRRSCGATAYSKFFKNLCP 171
+ ++CA DI G CP +L+ P GGCN+ CT+F+ ++CC + CG T YS+FFK LCP
Sbjct: 122 -RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGK--CGPTEYSRFFKRLCP 178
Query: 172 NVYTYPMDDPASTLACPTGTGYKVVFCP 199
+ ++Y +D P +T+ CP + Y+V FCP
Sbjct: 179 DAFSYVLDKP-TTVTCPGSSNYRVTFCP 205
>pdb|3AOK|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin Ii
Length = 207
Score = 190 bits (483), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 97/208 (46%), Positives = 133/208 (63%), Gaps = 15/208 (7%)
Query: 2 FEIQNNCIYTVWAAANPG------GGKELHQHQSWHINL---TDAGSIWARTNCNFSADG 52
FEI N C YTVWAAA+ G GG++L+ +SW IN+ T G IWART+C F G
Sbjct: 3 FEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDDSG 62
Query: 53 TGNCESGDCDGVLNCASDSSPPVTLAEYSLNVSKNFDLFNLSLMNGFNIPMEFKGTSSMC 112
G C +GDC G+L C PP TLAE+SLN D ++S + GFN+PM+F T+ C
Sbjct: 63 RGICRTGDCGGLLQCKRFGRPPTTLAEFSLNQYGK-DYIDISNIKGFNVPMDFSPTTRGC 121
Query: 113 TQVIKCAGDINGLCPNELRHP-GGCNNPCTLFKNDQFCCNVDRRSCGATAYSKFFKNLCP 171
+ ++CA DI G CP +L+ P GGCN+ CT+F+ ++CC + CG T YS+FFK LCP
Sbjct: 122 -RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGK--CGPTEYSRFFKRLCP 178
Query: 172 NVYTYPMDDPASTLACPTGTGYKVVFCP 199
+ ++Y +D P +T+ CP + Y+V FCP
Sbjct: 179 DAFSYVLDKP-TTVTCPGSSNYRVTFCP 205
>pdb|1KWN|A Chain A, 1.2 A Structure Of Thaumatin Crystallized In Gel
pdb|1LXZ|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LY0|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LR2|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1LR3|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1PP3|A Chain A, Structure Of Thaumatin In A Hexagonal Space Group
pdb|1PP3|B Chain B, Structure Of Thaumatin In A Hexagonal Space Group
pdb|2OQN|A Chain A, High Pressure Cryocooling Of Capillary Sample
Cryoprotection And Diffraction Phasing At Long
Wavelengths
pdb|1THI|A Chain A, Crystal Structures Of Two Intensely Sweet Proteins
pdb|2VHR|A Chain A, Atomic Resolution (0.95a) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 4 C
pdb|2VI1|A Chain A, Atomic Resolution (1.04 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 22 C.
pdb|2VI2|A Chain A, Atomic Resolution (1.05 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 4c
pdb|2VI3|A Chain A, Atomic Resolution (0.98 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 20 C
pdb|2VI4|A Chain A, Atomic Resolution (1.10 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 6 C.
pdb|2VU6|A Chain A, Atomic Resolution (0.95 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 19 C.
pdb|2VU7|A Chain A, Atomic Resolution (1.08 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 4 C
pdb|3QY5|A Chain A, Microfluidic Crystallization Of Thaumatin Using The
Crystal Former
pdb|4AXR|A Chain A, Crystal Structure Of Thaumatin From A Auto-Harvested
Crystal
pdb|4BAL|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-
Hydroxymethyltriazoledipicolinate Complex At 1.30 A
Resolution.
pdb|4BAR|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-Hydroxyethyltriazole
Dipicolinate Complex At 1.20 A Resolution.
pdb|3ZEJ|A Chain A, Thaumatin Structure Determined At Room Temperature By
In-Situ Diffraction In Chipx
Length = 207
Score = 190 bits (482), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 97/208 (46%), Positives = 135/208 (64%), Gaps = 15/208 (7%)
Query: 2 FEIQNNCIYTVWAAANPG------GGKELHQHQSWHINL---TDAGSIWARTNCNFSADG 52
FEI N C YTVWAAA+ G GG++L+ +SW IN+ T+ G IWART+C F G
Sbjct: 3 FEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDDSG 62
Query: 53 TGNCESGDCDGVLNCASDSSPPVTLAEYSLNVSKNFDLFNLSLMNGFNIPMEFKGTSSMC 112
+G C++GDC G+L C PP TLAE+SLN D ++S + GFN+PM F T+ C
Sbjct: 63 SGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGK-DYIDISNIKGFNVPMNFSPTTRGC 121
Query: 113 TQVIKCAGDINGLCPNELRHP-GGCNNPCTLFKNDQFCCNVDRRSCGATAYSKFFKNLCP 171
+ ++CA DI G CP +L+ P GGCN+ CT+F+ ++CC + CG T YS+FFK LCP
Sbjct: 122 -RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGK--CGPTEYSRFFKRLCP 178
Query: 172 NVYTYPMDDPASTLACPTGTGYKVVFCP 199
+ ++Y +D P +T+ CP + Y+V FCP
Sbjct: 179 DAFSYVLDKP-TTVTCPGSSNYRVTFCP 205
>pdb|2BLR|A Chain A, Thaumatin Before A High Dose X-Ray "burn"
pdb|2BLU|A Chain A, Thaumatin After A High Dose X-Ray "burn"
pdb|2VHK|A Chain A, Atomic Resolution (0.94 A) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 22c
pdb|2WBZ|A Chain A, 1.6 A Structure Of Thaumatin Crystallized Without Tartrate
At 4 C
pdb|3N02|A Chain A, Thaumatic Crystals Grown In Loops/micromounts
pdb|3N03|A Chain A, Thaumatin Crystals Grown From Drops
pdb|4AXU|A Chain A, Crystal Structure Of Thaumatin From An Auto-Harvested
Crystal, Control Experiment
Length = 206
Score = 190 bits (482), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 97/208 (46%), Positives = 135/208 (64%), Gaps = 15/208 (7%)
Query: 2 FEIQNNCIYTVWAAANPG------GGKELHQHQSWHINL---TDAGSIWARTNCNFSADG 52
FEI N C YTVWAAA+ G GG++L+ +SW IN+ T+ G IWART+C F G
Sbjct: 3 FEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDDSG 62
Query: 53 TGNCESGDCDGVLNCASDSSPPVTLAEYSLNVSKNFDLFNLSLMNGFNIPMEFKGTSSMC 112
+G C++GDC G+L C PP TLAE+SLN D ++S + GFN+PM F T+ C
Sbjct: 63 SGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGK-DYIDISNIKGFNVPMNFSPTTRGC 121
Query: 113 TQVIKCAGDINGLCPNELRHP-GGCNNPCTLFKNDQFCCNVDRRSCGATAYSKFFKNLCP 171
+ ++CA DI G CP +L+ P GGCN+ CT+F+ ++CC + CG T YS+FFK LCP
Sbjct: 122 -RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGK--CGPTEYSRFFKRLCP 178
Query: 172 NVYTYPMDDPASTLACPTGTGYKVVFCP 199
+ ++Y +D P +T+ CP + Y+V FCP
Sbjct: 179 DAFSYVLDKP-TTVTCPGSSNYRVTFCP 205
>pdb|2D8O|A Chain A, Structure Of Vil-Thaumatin
Length = 207
Score = 188 bits (477), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 96/208 (46%), Positives = 134/208 (64%), Gaps = 15/208 (7%)
Query: 2 FEIQNNCIYTVWAAANPG------GGKELHQHQSWHINL---TDAGSIWARTNCNFSADG 52
FEI N C YTVWAAA+ G GG++L+ +SW IN+ T+ G IWART+C F G
Sbjct: 3 FEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCXFDDSG 62
Query: 53 TGNCESGDCDGVLNCASDSSPPVTLAEYSLNVSKNFDLFNLSLMNGFNIPMEFKGTSSMC 112
+G C++GDC G+L C PP TLAE+SLN D ++S + GFN+PM F T+ C
Sbjct: 63 SGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQXGK-DYIDISNIKGFNVPMNFSPTTRGC 121
Query: 113 TQVIKCAGDINGLCPNELRHP-GGCNNPCTLFKNDQFCCNVDRRSCGATAYSKFFKNLCP 171
+ ++CA DI G CP +L+ P GGCN+ CT+F+ ++CC + CG T S+FFK LCP
Sbjct: 122 -RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGK--CGPTEXSRFFKRLCP 178
Query: 172 NVYTYPMDDPASTLACPTGTGYKVVFCP 199
+ ++Y +D P +T+ CP + Y+V FCP
Sbjct: 179 DAFSYVLDKP-TTVTCPGSSNYRVTFCP 205
>pdb|2D8P|A Chain A, Structure Of Hyper-Vil-Thaumatin
Length = 207
Score = 185 bits (469), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 95/208 (45%), Positives = 133/208 (63%), Gaps = 15/208 (7%)
Query: 2 FEIQNNCIYTVWAAANPG------GGKELHQHQSWHINL---TDAGSIWARTNCNFSADG 52
FEI N C TVWAAA+ G GG++L+ +SW IN+ T+ G IWART+C F G
Sbjct: 3 FEIVNRCSXTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCXFDDSG 62
Query: 53 TGNCESGDCDGVLNCASDSSPPVTLAEYSLNVSKNFDLFNLSLMNGFNIPMEFKGTSSMC 112
+G C++GDC G+L C PP TLAE+SLN D ++S + GFN+PM F T+ C
Sbjct: 63 SGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQXGK-DXIDISNIKGFNVPMNFSPTTRGC 121
Query: 113 TQVIKCAGDINGLCPNELRHP-GGCNNPCTLFKNDQFCCNVDRRSCGATAYSKFFKNLCP 171
+ ++CA DI G CP +L+ P GGCN+ CT+F+ ++CC + CG T S+FFK LCP
Sbjct: 122 -RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGK--CGPTEXSRFFKRLCP 178
Query: 172 NVYTYPMDDPASTLACPTGTGYKVVFCP 199
+ ++Y +D P +T+ CP + Y+V FCP
Sbjct: 179 DAFSYVLDKP-TTVTCPGSSNYRVTFCP 205
>pdb|2AHN|A Chain A, High Resolution Structure Of A Cherry Allergen Pru Av 2
Length = 222
Score = 113 bits (282), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 105/221 (47%), Gaps = 24/221 (10%)
Query: 2 FEIQNNCIYTVWAAANPGGGK--------ELHQHQSWHINLTDA--GSIWARTNCNFSAD 51
+NNC Y VW K EL S+ ++ G WART C+ A
Sbjct: 3 ISFKNNCPYMVWPGTLTSDQKPQLSTTGFELASQASFQLDTPVPWNGRFWARTGCSTDAS 62
Query: 52 GTGNCESGDC-DGVLNCASDSS-PPVTLAEYSLNVSKNFDLFNLSLMNGFNIPMEF--KG 107
G C + DC G + C + + PP TLAE+++ D +++SL++GFN+PM +G
Sbjct: 63 GKFVCATADCASGQVMCNGNGAIPPATLAEFNIPAGGGQDFYDVSLVDGFNLPMSVTPQG 122
Query: 108 TSSMCTQVIKCAGDINGLCPNELRHPG------GCNNPCTLFKNDQFCCNVDR---RSCG 158
+ C + C ++N +CP+EL+ G C + C F Q+CC + +C
Sbjct: 123 GTGDC-KTASCPANVNAVCPSELQKKGSDGSVVACLSACVKFGTPQYCCTPPQNTPETCP 181
Query: 159 ATAYSKFFKNLCPNVYTYPMDDPASTLACPTGTGYKVVFCP 199
T YS+ F N CP+ Y+Y DD T C G Y + FCP
Sbjct: 182 PTNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFCP 222
>pdb|3ZS3|A Chain A, High Resolution Structure Of Mal D 2, The Thaumatin Like
Food Allergen From Apple
Length = 222
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 102/217 (47%), Gaps = 24/217 (11%)
Query: 6 NNCIYTVWAAANPGGGK--------ELHQHQSWHINLTD--AGSIWARTNCNFSADGTGN 55
NNC TVW G K EL S ++ +G W RT C+ A G
Sbjct: 7 NNCPNTVWPGTLTGDQKPQLSLTGFELASKASRSVDAPSPWSGRFWGRTRCSTDAAGKFT 66
Query: 56 CESGDC-DGVLNC-ASDSSPPVTLAEYSLNVSKNFDLFNLSLMNGFNIPMEF--KGTSSM 111
CE+ DC G + C + + PP TL E ++ + D +++SL++GFN+PM +G +
Sbjct: 67 CETADCGSGQVACNGAGAVPPATLVEITIAANGGQDYYDVSLVDGFNLPMSVAPQGGTGE 126
Query: 112 CTQVIKCAGDINGLCPNELRHPGG------CNNPCTLFKNDQFCC---NVDRRSCGATAY 162
C + C ++N +CP L+ C + C F + ++CC N +C T Y
Sbjct: 127 C-KPSSCPANVNKVCPAPLQVKAADGSVISCKSACLAFGDSKYCCTPPNNTPETCPPTEY 185
Query: 163 SKFFKNLCPNVYTYPMDDPASTLACPTGTGYKVVFCP 199
S+ F+ CP Y+Y DD ST C G Y + FCP
Sbjct: 186 SEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFCP 222
>pdb|3G7M|A Chain A, Structure Of The Thaumatin-Like Xylanase Inhibitor Tlxi
Length = 151
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 60/113 (53%), Gaps = 9/113 (7%)
Query: 2 FEIQNNCIYTVWAA-----ANPGGGKELHQHQSWHINLTDAGS--IWARTNCNFSADGTG 54
I N C +TVW A A GGG ELH SW ++ GS IW RT C+F G G
Sbjct: 3 LTITNRCHFTVWPAVALVLAQGGGGTELHPGASWSLDTPVIGSQYIWGRTGCSFDRAGKG 62
Query: 55 NCESGDCDG-VLNCASDSSPPVTLAEYSLNVSKNFDLFNLSLMNGFNIPMEFK 106
C++GDC G L C + + P T+AE S+ + N+ S + GFN+PM K
Sbjct: 63 RCQTGDCGGSSLTCGGNPAVPTTMAEVSV-LQGNYTYGVTSTLKGFNVPMNLK 114
>pdb|3AGR|A Chain A, Crystal Structure Of Nucleoside Triphosphate Hydrolases
From Neospora Caninum
pdb|3AGR|B Chain B, Crystal Structure Of Nucleoside Triphosphate Hydrolases
From Neospora Caninum
Length = 602
Score = 27.7 bits (60), Expect = 3.9, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 125 LCPN-ELRHPGGCNNPCTLFKNDQFCCNVD 153
LC N E RH G C NPC Q C D
Sbjct: 316 LCSNAEFRHQGICYNPCIFRGFRQACSAGD 345
>pdb|4D93|A Chain A, Crystal Structure Of Tep1s
pdb|4D93|B Chain B, Crystal Structure Of Tep1s
pdb|4D93|C Chain C, Crystal Structure Of Tep1s
Length = 1323
Score = 27.7 bits (60), Expect = 4.4, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 143 FKNDQFCCNVDRRSCGATAYSKFFKNLCPNVYTYPMDDPASTLACPTGTGYK--VVFCP 199
+KN F N+D K L PN+ T + + + LA PTG G + V F P
Sbjct: 790 YKNQTFPFNLDINKKADNGSKKIEFRLNPNLLTMVIKNLDNLLAVPTGCGEQNMVKFVP 848
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Length = 376
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 82 LNVSKNFDLFNLSLMNGFNIPMEF 105
+N SKNF L+N+SL+N N + F
Sbjct: 156 INKSKNFTLYNVSLINSPNFHVVF 179
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.459
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,093,530
Number of Sequences: 62578
Number of extensions: 305831
Number of successful extensions: 578
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 479
Number of HSP's gapped (non-prelim): 34
length of query: 199
length of database: 14,973,337
effective HSP length: 94
effective length of query: 105
effective length of database: 9,091,005
effective search space: 954555525
effective search space used: 954555525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)