Query 043027
Match_columns 199
No_of_seqs 135 out of 668
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 12:06:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043027.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043027hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd09218 TLP-PA allergenic/anti 100.0 1.1E-82 2.4E-87 540.1 15.4 197 1-198 1-219 (219)
2 cd09219 TLP-F thaumatin-like p 100.0 5.5E-81 1.2E-85 531.8 14.8 195 2-199 1-229 (229)
3 smart00205 THN Thaumatin famil 100.0 1E-80 2.2E-85 528.0 15.9 197 2-199 1-218 (218)
4 PF00314 Thaumatin: Thaumatin 100.0 1.4E-77 3.1E-82 507.8 7.6 193 6-199 1-213 (213)
5 cd09215 Thaumatin-like the swe 100.0 2.7E-61 5.8E-66 391.2 13.8 147 2-198 1-157 (157)
6 cd09217 TLP-P thaumatin and al 100.0 3.6E-56 7.8E-61 359.4 13.7 147 2-199 1-151 (151)
7 cd08961 GH64-TLP-SF glycoside 100.0 1E-50 2.2E-55 328.2 13.7 142 2-197 1-153 (153)
8 PF04681 Bys1: Blastomyces yea 98.2 2.7E-05 5.9E-10 63.5 12.5 40 73-112 72-114 (155)
9 cd09214 GH64-like glycosyl hyd 72.5 2.6 5.7E-05 38.2 2.2 31 77-109 125-155 (319)
10 cd09214 GH64-like glycosyl hyd 70.9 3.7 8.1E-05 37.2 2.8 39 158-196 274-317 (319)
11 cd09216 GH64-LPHase-like glyco 69.9 3.4 7.3E-05 38.1 2.3 100 1-109 2-143 (353)
12 cd09220 GH64-GluB-like glycosi 66.2 4.3 9.4E-05 37.6 2.3 75 26-108 62-145 (369)
13 cd00407 Urease_beta Urease bet 63.8 12 0.00027 28.5 4.0 42 1-42 23-92 (101)
14 TIGR00192 urease_beta urease, 61.2 15 0.00032 28.1 4.0 43 1-43 23-93 (101)
15 PRK13202 ureB urease subunit b 59.5 22 0.00047 27.4 4.6 43 1-43 24-94 (104)
16 cd09216 GH64-LPHase-like glyco 59.0 8.9 0.00019 35.4 2.9 24 158-181 308-333 (353)
17 cd09220 GH64-GluB-like glycosi 58.4 9.9 0.00021 35.3 3.1 24 158-181 319-344 (369)
18 PRK13203 ureB urease subunit b 57.7 19 0.0004 27.6 4.0 42 1-42 23-92 (102)
19 PRK13201 ureB urease subunit b 51.9 31 0.00067 27.7 4.5 43 1-43 23-93 (136)
20 PF00699 Urease_beta: Urease b 50.8 24 0.00053 26.9 3.6 42 1-42 22-91 (100)
21 PRK13204 ureB urease subunit b 49.1 35 0.00076 28.0 4.6 43 1-43 46-116 (159)
22 PRK13198 ureB urease subunit b 45.4 43 0.00093 27.5 4.5 43 1-43 51-121 (158)
23 PRK13205 ureB urease subunit b 43.7 38 0.00083 27.8 4.0 43 1-43 23-93 (162)
24 PF00947 Pico_P2A: Picornaviru 42.1 9.9 0.00021 30.2 0.4 18 52-69 83-100 (127)
25 PF06282 DUF1036: Protein of u 40.7 34 0.00073 26.3 3.2 31 2-32 6-44 (115)
26 PRK13986 urease subunit alpha; 40.0 54 0.0012 28.5 4.5 43 1-43 128-198 (225)
27 PF05991 NYN_YacP: YacP-like N 37.2 11 0.00024 30.6 -0.0 10 95-104 2-11 (166)
28 PF11142 DUF2917: Protein of u 36.2 33 0.00071 23.6 2.2 21 22-42 2-29 (63)
29 cd05468 pVHL von Hippel-Landau 32.3 79 0.0017 25.0 4.2 43 1-45 10-58 (141)
30 PF10633 NPCBM_assoc: NPCBM-as 27.3 86 0.0019 21.7 3.2 34 1-34 10-56 (78)
31 COG3688 Predicted RNA-binding 22.8 30 0.00065 28.8 0.1 10 92-101 4-13 (173)
32 PF00635 Motile_Sperm: MSP (Ma 22.4 1.1E+02 0.0024 21.9 3.2 34 1-34 23-65 (109)
No 1
>cd09218 TLP-PA allergenic/antifungal thaumatin-like proteins: plant and animal homologs. This subfamily is represented by the thaumatin-like proteins (TLPs), Cherry Allergen Pru Av 2 TLP, Peach PpAZ44 TLP (a propylene-induced TLP in abscission), the Caenorhabditis elegans thaumatin family member (thn-6), and other plant and animal homologs. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Due to their inducible expression by environmental stresses such as pathogen/pest attack, drought and cold, plant TLPs are classified as the pathogenesis-related (PR) protein family 5 (PR5). Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3; Japanese cedar, Cry j3). TLPs are three-domain, crescent-fold structures with either an electronegative, ele
Probab=100.00 E-value=1.1e-82 Score=540.15 Aligned_cols=197 Identities=40% Similarity=0.929 Sum_probs=186.3
Q ss_pred CEEEEeCCCCceeeeeeC--------CCCeeecCCCceEEEE--ecceeeeeeecccCCCCCCccCcCCCCCCccccCC-
Q 043027 1 AFEIQNNCIYTVWAAANP--------GGGKELHQHQSWHINL--TDAGSIWARTNCNFSADGTGNCESGDCDGVLNCAS- 69 (199)
Q Consensus 1 t~ti~N~C~~tVWp~~~p--------~~g~~L~~g~s~s~~v--~w~GriWaRtgC~~~~~g~~~C~TGdC~g~l~C~~- 69 (199)
+|||+|||+||||||+++ ++||+|+||++++|.| .|+|||||||+|+||+.|+++|+||||+|+|+|++
T Consensus 1 tfti~N~C~~tVWp~~~~~~g~~~l~~gGf~L~~g~s~~~~vp~~WsGriWaRTgC~~~~~g~~~C~TGDCgg~l~C~g~ 80 (219)
T cd09218 1 TFTIYNKCPFTVWPGILGNAGHPQLGGGGFELAPGQSRTIDAPSGWSGRFWGRTGCSFDSSGKGSCATGDCGGGLECNGA 80 (219)
T ss_pred CEEEEECCCCCccceecCCCCCCCCCCCCEEcCCCCeEEEeCCCCcceeeeeccCCCCCCCCccccccCCCCCeeecCCC
Confidence 799999999999999964 4799999999999999 89999999999999999999999999999999997
Q ss_pred CCCCCcceeEEEeccCCCccceeeccccccCCCceeeecCC--CccCCcccccccccCCCcCCCcc------cCccCCcc
Q 043027 70 DSSPPVTLAEYSLNVSKNFDLFNLSLMNGFNIPMEFKGTSS--MCTQVIKCAGDINGLCPNELRHP------GGCNNPCT 141 (199)
Q Consensus 70 ~g~~p~TlaEftl~~~~~~d~YdVSlVdG~Nlp~~i~p~~~--~C~~~~~C~~dl~~~CP~~l~~~------~gC~SaC~ 141 (199)
.|.||+|||||+|+..+++|||||||||||||||+|.|+++ .| +.++|.+|||+.||+|||++ +||+|||+
T Consensus 81 ~g~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~~~C-~~~~C~~din~~CP~~L~v~~~~g~vv~C~SaC~ 159 (219)
T cd09218 81 GGAPPATLAEFTLGGSGGQDFYDVSLVDGYNLPVSITPQGGSGGC-RTAGCVADLNAVCPAELQVKNSGGRVVACKSACL 159 (219)
T ss_pred CCCCCceeEEEEeccCCCCcceeeeeeccccCCEEEEecCCCCCC-CCCcccCcccccCCHHHeeccCCCcEeeecCHHH
Confidence 46899999999999877899999999999999999999763 69 78999999999999999985 48999999
Q ss_pred ccCCCccccccCC---CCCCCchhhhHhhhcCCCCcCCCCCCCCCceeeCCCCceEEEec
Q 043027 142 LFKNDQFCCNVDR---RSCGATAYSKFFKNLCPNVYTYPMDDPASTLACPTGTGYKVVFC 198 (199)
Q Consensus 142 ~~~~~~~CC~g~~---~~C~pt~ys~~fK~~CP~AYsya~Dd~~stftC~~~~~y~itFC 198 (199)
+|++|||||+|+| ++|+|+.||++||++||+||+|||||++|+|+|+++++|+|+||
T Consensus 160 ~f~~~~~CC~g~~~~p~~C~pt~ys~~FK~~CP~Aysya~Dd~~s~~tC~~~~~Y~I~FC 219 (219)
T cd09218 160 AFNTDEYCCRGAYGTPETCKPTTYSRLFKNACPQAYSYAYDDPTSTFTCSSGANYVITFC 219 (219)
T ss_pred hhCCccceecCCCCCCCcCCCcchhHHHHhhCccccccCCCCCCcceEcCCCCCEEEEeC
Confidence 9999999999988 58999999999999999999999999999999998899999998
No 2
>cd09219 TLP-F thaumatin-like proteins: basidiomycete homologs. This subfamily is represented by Lentinula edodes TLG1, a thaumatin-like protein (TLP), as well as, other basidiomycete homologs. In general, TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. TLG1 TLP is involved in lentinan degradation and fruiting body senescence. TLG1 expressed in Escherichia coli and Aspergillus oryzae exhibited beta-1,3-glucanase activity and demonstrated lentinan degrading activity. TLG1 is proposed to be involved in lentinan and cell wall degradation during senescence following harvest and spore diffusion. TLPs are three-domain, crescent-fold structures with either an electronegative, electropositive, or neutral cleft occurring between domains I and II. TLG1 from Lentinula edodes contains the required acidic amino acids conserved in the appropriate positions to possess an electronegative cleft. TLPs within this subfamily contain 13 conserve
Probab=100.00 E-value=5.5e-81 Score=531.80 Aligned_cols=195 Identities=35% Similarity=0.776 Sum_probs=181.6
Q ss_pred EEEEeCCCCceeeeeeC-----------CCCeeecCCCceEEEE--ecc-eeeeeeecccCC-CCCCccCcCCCCCCccc
Q 043027 2 FEIQNNCIYTVWAAANP-----------GGGKELHQHQSWHINL--TDA-GSIWARTNCNFS-ADGTGNCESGDCDGVLN 66 (199)
Q Consensus 2 ~ti~N~C~~tVWp~~~p-----------~~g~~L~~g~s~s~~v--~w~-GriWaRtgC~~~-~~g~~~C~TGdC~g~l~ 66 (199)
|||+|||+||||||+++ .+||+|+||++++|.+ .|+ |||||||||+|| ..|+++|+||||+|+|+
T Consensus 1 fti~N~C~~TVWPgi~~~~g~~~~~~~~~gGf~L~pg~s~~i~vp~~w~~GRiWgRTgC~~d~~~G~~~C~TGdCgg~l~ 80 (229)
T cd09219 1 FTVKNSCSSTIWPAMFTGGNFIDAVPDQATGWEAAAGGQVEFTVPDNWTAGRIWARTGCDFSDNPGPFSCLTGGCGGGLT 80 (229)
T ss_pred CEEEeCCCCCccceecCCCCCccccccCCCCEecCCCCeEEEECCCCCcccceeccCCCCCCCCCCCCCcccCCCCceee
Confidence 79999999999999953 3799999999999999 797 999999999999 46899999999999999
Q ss_pred cCCCCCCCcceeEEEeccCCCccceeeccccccCCCceeeecCCCccCCcccccccccCCCcCCCcc-------cCccCC
Q 043027 67 CASDSSPPVTLAEYSLNVSKNFDLFNLSLMNGFNIPMEFKGTSSMCTQVIKCAGDINGLCPNELRHP-------GGCNNP 139 (199)
Q Consensus 67 C~~~g~~p~TlaEftl~~~~~~d~YdVSlVdG~Nlp~~i~p~~~~C~~~~~C~~dl~~~CP~~l~~~-------~gC~Sa 139 (199)
|++.|.||+|||||+|+.. ++|||||||||||||||+|.|.. .| +.++|.+|||+.||+||+++ +||+||
T Consensus 81 C~~~g~pP~TlaEftL~~~-~~D~YdVSlVDGfNlP~~i~P~~-~C-~~~~C~~dln~~CP~~L~v~~~~~g~~vaC~Sa 157 (229)
T cd09219 81 CENSDQPPASLAEFTLIGG-KEDNYDISLVDGFNIPLNITNNI-TC-PQPQCQVDLNVLCPALLRGPLDQKGVNLGCISP 157 (229)
T ss_pred cCCCCCCCcceeeEEecCC-CCceeEEEEecccccceEeccCC-CC-CCCcccCCCcccCCHHHccccCCCCccceecCH
Confidence 9988899999999999976 78999999999999999999954 79 78999999999999999985 489999
Q ss_pred ccc-cCC--CccccccCC---CCCCC--chhhhHhhhcCCCCcCCCCCCCC--CceeeCC--CCceEEEecC
Q 043027 140 CTL-FKN--DQFCCNVDR---RSCGA--TAYSKFFKNLCPNVYTYPMDDPA--STLACPT--GTGYKVVFCP 199 (199)
Q Consensus 140 C~~-~~~--~~~CC~g~~---~~C~p--t~ys~~fK~~CP~AYsya~Dd~~--stftC~~--~~~y~itFCP 199 (199)
|++ |+. |||||+|+| ++|+| +.||++||++||+||||||||++ |+|+|++ +++|+|+|||
T Consensus 158 C~a~~~~~~~~yCC~g~~~~p~~C~p~~t~ys~~FK~~CP~AYSYa~Dd~ssts~ftC~~~~~~~Y~ItFCP 229 (229)
T cd09219 158 CNRDKNHDDSPSCCTGSHNKPETCPQSGVGNYAYFKDNCPTAYAYAYDEKSHTALWTCGDSKSADYTVTFCP 229 (229)
T ss_pred hhhhccCCCCcccccCCCCCcCCCCCCcccHhHHHHhhCcccccccccCccccccEEeCCCCCCCEEEEeCC
Confidence 999 655 999999998 68999 88999999999999999999999 6799997 6999999998
No 3
>smart00205 THN Thaumatin family. The thaumatin family gathers proteins related to plant pathogenesis. The thaumatin family includes very basic members with extracellular and vacuolar localization. Thaumatin itsel is a potent sweet-tasting protein. Several members of this family display significant in vitro activity of inhibiting hyphal growth or spore germination of various fungi probably by a membrane permeabilizing mechanism.
Probab=100.00 E-value=1e-80 Score=528.00 Aligned_cols=197 Identities=52% Similarity=1.097 Sum_probs=185.8
Q ss_pred EEEEeCCCCceeeeeeC-------CCCeeecCCCceEEEE--ecc-eeeeeeecccCCCCCCccCcCCCCCCccccCC-C
Q 043027 2 FEIQNNCIYTVWAAANP-------GGGKELHQHQSWHINL--TDA-GSIWARTNCNFSADGTGNCESGDCDGVLNCAS-D 70 (199)
Q Consensus 2 ~ti~N~C~~tVWp~~~p-------~~g~~L~~g~s~s~~v--~w~-GriWaRtgC~~~~~g~~~C~TGdC~g~l~C~~-~ 70 (199)
|||+|||+||||||+++ ++||+|+||++++|.+ .|+ |||||||+|+|++.|+++|+||||+|+|+|++ .
T Consensus 1 fti~N~C~~tVWp~~~~~g~~~l~~gGf~L~~g~s~~~~~p~~w~sGriW~RtgC~~d~~G~~~C~TGdCgG~l~C~g~g 80 (218)
T smart00205 1 FEFVNNCPYTVWAAALPSGKPQLSGGGFELNSGASWQLDAPPGTKMGRIWARTGCNFDASGRGRCATGDCGGVLQCNGWG 80 (218)
T ss_pred CEEEcCCCCceeceecCCCCcccCCCcEecCCCCeEEEECCCCCccceEecccCCCcCCCCccccccCCCCCeeecCCCC
Confidence 79999999999999975 3799999999999999 786 99999999999999999999999999999997 4
Q ss_pred CCCCcceeEEEeccCCCccceeeccccccCCCceeeecC--CCccCCcccccccccCCCcCCCcc-----cCccCCcccc
Q 043027 71 SSPPVTLAEYSLNVSKNFDLFNLSLMNGFNIPMEFKGTS--SMCTQVIKCAGDINGLCPNELRHP-----GGCNNPCTLF 143 (199)
Q Consensus 71 g~~p~TlaEftl~~~~~~d~YdVSlVdG~Nlp~~i~p~~--~~C~~~~~C~~dl~~~CP~~l~~~-----~gC~SaC~~~ 143 (199)
|+||+|||||+|+..+++|||||||||||||||+|.|++ +.| +..+|.+|||+.||+||+++ +||+|||++|
T Consensus 81 g~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~~~C-~~~~C~~d~~~~CP~~L~v~~~g~vv~C~SaC~~f 159 (218)
T smart00205 81 GRPPATLAEFALNQFGGLDFYDVSLVDGFNIPMSFTPTGGSGDC-KGAGCTADLNAQCPAELQVPGGGSVVACNSACTVF 159 (218)
T ss_pred CCCCcceeEEEecCCCCcceeeeEeeccccCCEEEEecCCCCCc-CCCcCCCcccccCCHHHccccCCcccccccHhhcc
Confidence 689999999999987789999999999999999999974 359 88999999999999999985 4799999999
Q ss_pred CCCccccccCC---CCCCCchhhhHhhhcCCCCcCCCCCCCCCceeeCCCCceEEEecC
Q 043027 144 KNDQFCCNVDR---RSCGATAYSKFFKNLCPNVYTYPMDDPASTLACPTGTGYKVVFCP 199 (199)
Q Consensus 144 ~~~~~CC~g~~---~~C~pt~ys~~fK~~CP~AYsya~Dd~~stftC~~~~~y~itFCP 199 (199)
++|||||+|+| ++|+|+.||++||++||+||+||+||++|+|+|+++++|+|+|||
T Consensus 160 ~~~~yCC~g~~~~~~~C~pt~ys~~FK~~CP~Aysya~Dd~~st~tC~~~~~y~V~FCp 218 (218)
T smart00205 160 GTDQYCCTGGQNNPETCPPTNYSRIFKNACPDAYSYAYDDPTSTFTCTGGTNYKVTFCP 218 (218)
T ss_pred CCCcceecCCCCCCCCCCCcchhhHHhhhCCccccCccCCCCcceEccCCCCEEEEeCC
Confidence 99999999998 589999999999999999999999999999999988999999998
No 4
>PF00314 Thaumatin: Thaumatin family; InterPro: IPR001938 Thaumatin [] is an intensely sweet-tasting protein, 100 000 times sweeter than sucrose on a molar basis [] found in berries from Thaumatococcus daniellii, a tropical flowering plant known as Katemfe, it is induced by attack by viroids, which are single-stranded unencapsulated RNA molecules that do not code for protein. Thaumatin consists of about 200 residues and contains 8 disulphide bonds. Like other PR proteins, thaumatin is predicted to have a mainly beta structure, with a high content of beta-turns and little helix []. Several stress-induced proteins of plants have been found to be related to thaumatins: A maize alpha-amylase/trypsin inhibitor Two tobacco pathogenesis-related proteins: PR-R major and minor forms,which are induced after infection with viruses Salt-induced protein NP24 from tomato Osmotin, a salt-induced protein from tobacco[] Osmotin-like proteins OSML13, OSML15 and OSML81 from potato [] P21, a leaf protein from soybean PWIR2, a leaf protein from wheat [] Zeamatin, a maize antifunal protein [] This protein is also referred to as pathogenesis-related group 5 (PR5), as many thaumatin-like proteins accumulate in plants in response to infection by a pathogen and possess antifungal activity []. The proteins are involved in systematically acquired resistance and stress response in plants, although their precise role is unknown [].; PDB: 3G7M_A 2I0W_A 1AUN_A 1Z3Q_A 1KWN_A 2OQN_A 1THW_A 1LY0_A 2D8O_A 1LR3_A ....
Probab=100.00 E-value=1.4e-77 Score=507.77 Aligned_cols=193 Identities=46% Similarity=1.029 Sum_probs=160.7
Q ss_pred eCCCCceeeeeeCC--------CCeeecCCCceEEEE--ecceeeeeeecccCCCCCCccCcCCCCCCccccCC-CCCCC
Q 043027 6 NNCIYTVWAAANPG--------GGKELHQHQSWHINL--TDAGSIWARTNCNFSADGTGNCESGDCDGVLNCAS-DSSPP 74 (199)
Q Consensus 6 N~C~~tVWp~~~p~--------~g~~L~~g~s~s~~v--~w~GriWaRtgC~~~~~g~~~C~TGdC~g~l~C~~-~g~~p 74 (199)
|||+||||||+++. +||+|+||++++|.+ +|+|||||||+|++++.|+++|+||||+|+++|++ .+.+|
T Consensus 1 N~C~~tvWp~~~~~~~~~~~~~~g~~l~~g~s~~~~~p~~WsGriW~RTgC~~~~~g~~~C~TGdCgg~~~C~~~~~~~P 80 (213)
T PF00314_consen 1 NNCPFTVWPAILPNAGSPPLSTGGFRLDPGQSWSLTVPAGWSGRIWARTGCSFDGGGRGSCATGDCGGRLECNGAGGSPP 80 (213)
T ss_dssp E-SSS-EEEEEETTTSSSEEEEEEEEE-TTEEEEEE--TTESEEEEEEEEEEEETTSBEEEEES-STTBSSSSS----SS
T ss_pred CcCCCCeeeeecCCCCCCcCCCCCEEcCCCCeEEEecCccccceeeecCCCcCCCCCCcccccCCCCcccccccccCccc
Confidence 99999999999762 689999999999999 89999999999999999999999999999999998 57899
Q ss_pred cceeEEEeccCCCccceeeccccccCCCceeeec-CCCccCCcccccccccCCCcCCCcc-----cCccCCccccCCCcc
Q 043027 75 VTLAEYSLNVSKNFDLFNLSLMNGFNIPMEFKGT-SSMCTQVIKCAGDINGLCPNELRHP-----GGCNNPCTLFKNDQF 148 (199)
Q Consensus 75 ~TlaEftl~~~~~~d~YdVSlVdG~Nlp~~i~p~-~~~C~~~~~C~~dl~~~CP~~l~~~-----~gC~SaC~~~~~~~~ 148 (199)
+|||||+|++.+++|||||||||||||||+|+|. +..| +..+|.+||+..||.||+++ ++|+|+|.+|+++||
T Consensus 81 ~TlaEftl~~~~~~d~YDVSlVdGfNlP~~i~p~~~~~C-~~~~C~~di~~~CP~~l~v~~~~~vv~C~SaC~~~~~~~~ 159 (213)
T PF00314_consen 81 ATLAEFTLNGSNGQDFYDVSLVDGFNLPMSISPSGGSNC-RSPGCPADINSWCPSELQVKNSDGVVGCKSACDAFNTDEY 159 (213)
T ss_dssp --EEEEEEEETTTEEEEEEESTT-BSS-EEEEESSSSSS-SSEEE-S-HHHHE-CCCEEETTSSTTEE--HHHHH-SHHH
T ss_pred ceeEEEEeccCCCcceEEEEeeeeecCChhhccCCCCcc-ccccCccccccccchhheeeccCceeeecccceeccCCcc
Confidence 9999999987788999999999999999999999 4689 88999999999999999983 589999999999999
Q ss_pred ccccCC---CCCCCchhhhHhhhcCCCCcCCCCCCCCCceeeCCCCceEEEecC
Q 043027 149 CCNVDR---RSCGATAYSKFFKNLCPNVYTYPMDDPASTLACPTGTGYKVVFCP 199 (199)
Q Consensus 149 CC~g~~---~~C~pt~ys~~fK~~CP~AYsya~Dd~~stftC~~~~~y~itFCP 199 (199)
||+|+| .+|+++.|+++||++||+||+|||||++|+|+|+++++|+|+|||
T Consensus 160 CC~g~~~~~~~C~~~~ys~~fK~~CP~AYsya~DD~~s~ftC~~~~~y~ItFCP 213 (213)
T PF00314_consen 160 CCRGAYNTPDTCPPTNYSQFFKKACPDAYSYAYDDQTSTFTCPAGTNYTITFCP 213 (213)
T ss_dssp HTTCCS-TTSCS---HHHHHHHHH-TTSBSSTTSHTTT-EEEETT-EEEEEEST
T ss_pred ccccccCCCcccccchhhhhhhhhCcccccccccCCCcceECCCCCCEEEEeCc
Confidence 999987 599999999999999999999999999999999988999999999
No 5
>cd09215 Thaumatin-like the sweet-tasting protein, thaumatin, and thaumatin-like proteins involved in host defense. This family is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii and thaumatin-like proteins (TLPs) involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs included in this family are such proteins as zeamatin, found in high concentrations in cereal seeds; osmotin, a salt-induced protein in osmotically stressed plants; and PpAZ44, a propylene-induced TLP in abscission of young fruit. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun
Probab=100.00 E-value=2.7e-61 Score=391.21 Aligned_cols=147 Identities=45% Similarity=0.965 Sum_probs=134.6
Q ss_pred EEEEeCCCCceeeeeeC-------CCCeeecCCCceEEEE--ecceeeeeeecccCCC-CCCccCcCCCCCCccccCCCC
Q 043027 2 FEIQNNCIYTVWAAANP-------GGGKELHQHQSWHINL--TDAGSIWARTNCNFSA-DGTGNCESGDCDGVLNCASDS 71 (199)
Q Consensus 2 ~ti~N~C~~tVWp~~~p-------~~g~~L~~g~s~s~~v--~w~GriWaRtgC~~~~-~g~~~C~TGdC~g~l~C~~~g 71 (199)
|||+|||+||||||+++ ++||+|+||++++|.+ .|+|||||||+|+|++ .|+++|+||||+|+++|++.|
T Consensus 1 ~ti~N~C~~tVWPg~~~~~g~~~~~gGf~L~~g~s~~~~~p~~wsGriWgRTgC~~~~~~g~~~C~TGdCgg~l~C~g~g 80 (157)
T cd09215 1 FTITNRCPYTIWPAIFTQVGKGPYTGGFELNPGETKSFDVSAGWQGRIWARTNCSFNANSGGNACLTGDCNGGLNCQGTG 80 (157)
T ss_pred CEEEcCCCCCeeceecCCCCCCCCCCCEecCCCCeeEEecCCCCeEeeecccccccCCCCCCCCcccCCCCceeecCCCC
Confidence 79999999999999965 4799999999999999 7999999999999998 799999999999999999888
Q ss_pred CCCcceeEEEeccCCCccceeeccccccCCCceeeecCCCccCCcccccccccCCCcCCCcccCccCCccccCCCccccc
Q 043027 72 SPPVTLAEYSLNVSKNFDLFNLSLMNGFNIPMEFKGTSSMCTQVIKCAGDINGLCPNELRHPGGCNNPCTLFKNDQFCCN 151 (199)
Q Consensus 72 ~~p~TlaEftl~~~~~~d~YdVSlVdG~Nlp~~i~p~~~~C~~~~~C~~dl~~~CP~~l~~~~gC~SaC~~~~~~~~CC~ 151 (199)
.||+|||||+|++.+++|||||||||||||||+|.|+.+.| +..+|.
T Consensus 81 ~pp~TlaEftl~~~~~~d~YdVSlVdG~NlP~~i~P~~~~C-~~~~C~-------------------------------- 127 (157)
T cd09215 81 GPPATLAEFTLSGGGGLDYYDISLVDGYNLPMSITPQPGEC-PTPICA-------------------------------- 127 (157)
T ss_pred CCCcceEEEEecCCCCcceeEEEeeccccCCEEEecCCCCC-CCCccc--------------------------------
Confidence 89999999999987788999999999999999999975556 433333
Q ss_pred cCCCCCCCchhhhHhhhcCCCCcCCCCCCCCCceeeCCCCceEEEec
Q 043027 152 VDRRSCGATAYSKFFKNLCPNVYTYPMDDPASTLACPTGTGYKVVFC 198 (199)
Q Consensus 152 g~~~~C~pt~ys~~fK~~CP~AYsya~Dd~~stftC~~~~~y~itFC 198 (199)
. ||+||||||||++|+|+|+++++|+|+||
T Consensus 128 -------~----------Cp~Aysya~Dd~~s~~tC~~~~~y~v~FC 157 (157)
T cd09215 128 -------A----------CPDAYSYAYDDQTSTFTCPGGAGYEVVFC 157 (157)
T ss_pred -------c----------CccccccCCCCCccceECCCCCCEEEEeC
Confidence 1 99999999999999999998899999999
No 6
>cd09217 TLP-P thaumatin and allergenic/antifungal thaumatin-like proteins: plant homologs. This subfamily is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii, allergenic/antifungal Thaumatin-like proteins (TLPs), and related plant proteins. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs in this subfamily include such proteins as zeamatin, found in high concentrations in cereal seeds, and osmotin, a salt-induced protein in osmotically stressed plants. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3
Probab=100.00 E-value=3.6e-56 Score=359.41 Aligned_cols=147 Identities=53% Similarity=1.190 Sum_probs=134.2
Q ss_pred EEEEeCCCCceeeeeeC-CCCeeecCCCceEEEE---ecceeeeeeecccCCCCCCccCcCCCCCCccccCCCCCCCcce
Q 043027 2 FEIQNNCIYTVWAAANP-GGGKELHQHQSWHINL---TDAGSIWARTNCNFSADGTGNCESGDCDGVLNCASDSSPPVTL 77 (199)
Q Consensus 2 ~ti~N~C~~tVWp~~~p-~~g~~L~~g~s~s~~v---~w~GriWaRtgC~~~~~g~~~C~TGdC~g~l~C~~~g~~p~Tl 77 (199)
|+|+|||+||||||++| ++||+|+||++++|.+ .|+|||||||+|+|++.|+++|+||||+|+++|.+.|.||+||
T Consensus 1 ~~~~N~C~~tvWp~~~~~~gG~~L~~g~~~~~~~p~~~w~griW~RTgC~~~~~g~~~C~TGdCgg~l~C~~~g~pp~Tl 80 (151)
T cd09217 1 FTITNNCGYTVWPAATPVGGGRQLNPGQSWTIDVPAGTAGGRIWGRTGCSFDASGRGSCQTGDCGGVLSCTGSGKPPATL 80 (151)
T ss_pred CEEEeCCCCcccceEecCCCCEeCCCCCeEEEEcCCCCceEEEeeecCCCcCCCCCCcccccCCCCeeecCCCCCCCcee
Confidence 79999999999999998 7899999999999999 4999999999999999999999999999999999878999999
Q ss_pred eEEEeccCCCccceeeccccccCCCceeeecCCCccCCcccccccccCCCcCCCcccCccCCccccCCCccccccCCCCC
Q 043027 78 AEYSLNVSKNFDLFNLSLMNGFNIPMEFKGTSSMCTQVIKCAGDINGLCPNELRHPGGCNNPCTLFKNDQFCCNVDRRSC 157 (199)
Q Consensus 78 aEftl~~~~~~d~YdVSlVdG~Nlp~~i~p~~~~C~~~~~C~~dl~~~CP~~l~~~~gC~SaC~~~~~~~~CC~g~~~~C 157 (199)
+||+|+. +++|||||||||||||||.|.|++..| +.++|..
T Consensus 81 ~E~tl~~-~~~d~YdISlVdG~NlP~~i~P~~~~C-~~~~C~~------------------------------------- 121 (151)
T cd09217 81 AEYTLNQ-SGQDFYDISLVDGFNVPMDFSPTGGGC-HAIPCAA------------------------------------- 121 (151)
T ss_pred EEEEecC-CCCccEEEEeecccccceEEecCCCCC-CCCcCCC-------------------------------------
Confidence 9999986 578999999999999999999975557 4334332
Q ss_pred CCchhhhHhhhcCCCCcCCCCCCCCCceeeCCCCceEEEecC
Q 043027 158 GATAYSKFFKNLCPNVYTYPMDDPASTLACPTGTGYKVVFCP 199 (199)
Q Consensus 158 ~pt~ys~~fK~~CP~AYsya~Dd~~stftC~~~~~y~itFCP 199 (199)
. ||+||+|++|| .++|+|+.+++|+|+|||
T Consensus 122 --d---------C~~ay~~~~D~-~~~~~C~~~~~~~v~fCp 151 (151)
T cd09217 122 --N---------CPDAYSYPKDP-TTTFTCPGGTNYRIVFCP 151 (151)
T ss_pred --C---------CchHhcCCCCC-CceEeCCCCCCEEEEeCC
Confidence 1 99999999994 799999999999999998
No 7
>cd08961 GH64-TLP-SF glycoside hydrolase family 64 (beta-1,3-glucanases which produce specific pentasaccharide oligomers) and thaumatin-like proteins. This superfamily includes glycoside hydrolases of family 64 (GH64), these are mostly bacterial beta-1,3-glucanases which cleave long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers and are implicated in fungal cell wall degradation. Also included in this superfamily are thaumatin, the sweet-tasting protein from the African berry Thaumatococcus daniellii, and thaumatin-like proteins (TLPs) which are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Like GH64s, some TLPs also hydrolyze the beta-1,3-glucans of the type commonly found in fungal walls. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. Several members of the plant TLP
Probab=100.00 E-value=1e-50 Score=328.21 Aligned_cols=142 Identities=35% Similarity=0.621 Sum_probs=125.2
Q ss_pred EEEEeCCCCceeeeeeC--------CCCeeecCCCceEEEE--ecceeeeeeecccCCCCCCccCcCCCCCCccccCC-C
Q 043027 2 FEIQNNCIYTVWAAANP--------GGGKELHQHQSWHINL--TDAGSIWARTNCNFSADGTGNCESGDCDGVLNCAS-D 70 (199)
Q Consensus 2 ~ti~N~C~~tVWp~~~p--------~~g~~L~~g~s~s~~v--~w~GriWaRtgC~~~~~g~~~C~TGdC~g~l~C~~-~ 70 (199)
|||+|||+|||||++++ .+||+|+||++++|.+ .|+||||+||+|+++..|++.|+||||++ +.|.+ .
T Consensus 1 ~ti~NnC~~tVWp~i~~~~~~~~~~~gg~~L~pG~s~si~vP~~wsGRIW~RtgC~~~~~g~g~C~TGdcgg-~~c~g~~ 79 (153)
T cd08961 1 LTITNNCGYQVWIYNLGTELSSAPDASGPGLAPGRSTTIQIPKGFSGRIWFRTGCSMDFSGTTGCLTQDPGV-VNPTDPN 79 (153)
T ss_pred CEEEeCCCCcCcceECCCCCCCCccCcccccCCCCcEEEEecCCceEEEEEecCCcccCCCCccccccCCCC-cccCCCC
Confidence 79999999999999975 2799999999999999 79999999999999988999999999998 56765 5
Q ss_pred CCCCcceeEEEeccCCCccceeeccccccCCCceeeecCCCccCCcccccccccCCCcCCCcccCccCCccccCCCcccc
Q 043027 71 SSPPVTLAEYSLNVSKNFDLFNLSLMNGFNIPMEFKGTSSMCTQVIKCAGDINGLCPNELRHPGGCNNPCTLFKNDQFCC 150 (199)
Q Consensus 71 g~~p~TlaEftl~~~~~~d~YdVSlVdG~Nlp~~i~p~~~~C~~~~~C~~dl~~~CP~~l~~~~gC~SaC~~~~~~~~CC 150 (199)
+.||+|||||||+..+++|||||||||||||||.|+|+.+. .
T Consensus 80 g~pp~TlaEfTl~~~~~~dfydISlVDGfNlP~~i~p~~~~----g---------------------------------- 121 (153)
T cd08961 80 RDPPFTLAEFTLNDFNSGDFIDSSLVDGFNAPMTVGPRRGD----G---------------------------------- 121 (153)
T ss_pred CCCCcceEEEEecCCCCcceEEEEeecccCCCEEEEeccCC----C----------------------------------
Confidence 78999999999997668999999999999999999996311 0
Q ss_pred ccCCCCCCCchhhhHhhhcCCCCcCCCCCCCCCceeeCCCCceEEEe
Q 043027 151 NVDRRSCGATAYSKFFKNLCPNVYTYPMDDPASTLACPTGTGYKVVF 197 (199)
Q Consensus 151 ~g~~~~C~pt~ys~~fK~~CP~AYsya~Dd~~stftC~~~~~y~itF 197 (199)
.|++.. |||+|||||+.++|+|+++.+|.|+|
T Consensus 122 -----~C~~~~----------~~~~~~~~~~~~~~~c~~~~~~~~~~ 153 (153)
T cd08961 122 -----TCLSTG----------DAYSYAFDDHESTFTCGGGRNYSLTF 153 (153)
T ss_pred -----Cccccc----------cccccCCCCccceEEcCCCCceEEeC
Confidence 122111 99999999999999999999999998
No 8
>PF04681 Bys1: Blastomyces yeast-phase-specific protein; InterPro: IPR006771 The pathogenic dimorphic fungal organism Blastomyces dermatitidis exists as a budding yeast at 37 degrees C and as a mycelium at 25 degrees C. Bys1 is expressed specifically in the high temperature, unicellular yeast morphology and codes for a protein of 18.6 kDa that contains multiple putative phosphorylation sites, a hydrophobic N terminus, and two 34-amino-acid domains with similarly spaced nine-amino-acid degenerative repeating motifs []. The molecular function of this protein is not known.
Probab=98.25 E-value=2.7e-05 Score=63.47 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=32.5
Q ss_pred CCcceeEEEeccCCCccceeeccccccCC---CceeeecCCCc
Q 043027 73 PPVTLAEYSLNVSKNFDLFNLSLMNGFNI---PMEFKGTSSMC 112 (199)
Q Consensus 73 ~p~TlaEftl~~~~~~d~YdVSlVdG~Nl---p~~i~p~~~~C 112 (199)
.|.|..||+|...+.+.|||+|-|.|+.. +|.|.|.+..|
T Consensus 72 ~pqt~FaYtL~~d~~~VwYDLSdvfGdPF~G~~v~v~ps~~~C 114 (155)
T PF04681_consen 72 SPQTIFAYTLVDDNNQVWYDLSDVFGDPFAGHKVTVNPSDPSC 114 (155)
T ss_pred CceeEEEEEecCCCceEEEECccccCCCcCCCEEEEecCCCCC
Confidence 58999999998766789999999999754 37777766666
No 9
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=72.48 E-value=2.6 Score=38.22 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=26.5
Q ss_pred eeEEEeccCCCccceeeccccccCCCceeeecC
Q 043027 77 LAEYSLNVSKNFDLFNLSLMNGFNIPMEFKGTS 109 (199)
Q Consensus 77 laEftl~~~~~~d~YdVSlVdG~Nlp~~i~p~~ 109 (199)
.+|||++. ..-|-++|.||-|.|||.|+-.+
T Consensus 125 f~EFT~n~--~~l~~N~T~VD~~~lPl~l~l~~ 155 (319)
T cd09214 125 FIEFTYNA--TGLWGNTTRVDAFGIPLTLRLIG 155 (319)
T ss_pred EEEEEecC--CceEecccceeeeccCeEEEEEc
Confidence 47999984 56789999999999999998664
No 10
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=70.95 E-value=3.7 Score=37.23 Aligned_cols=39 Identities=28% Similarity=0.424 Sum_probs=26.6
Q ss_pred CCchhhhHhhhcCC--CCcCCCCCCCC---CceeeCCCCceEEE
Q 043027 158 GATAYSKFFKNLCP--NVYTYPMDDPA---STLACPTGTGYKVV 196 (199)
Q Consensus 158 ~pt~ys~~fK~~CP--~AYsya~Dd~~---stftC~~~~~y~it 196 (199)
..+.|||++.+.-. .||.|||||-. ++..-......+|+
T Consensus 274 ~tN~Yar~vH~~~idg~aYaF~YDDV~~~s~~v~~~~P~~~~it 317 (319)
T cd09214 274 PANYYAQFWHAHSINGLAYGFPYDDVNGQSSTLSTTDPTHATIT 317 (319)
T ss_pred CchHHHHHHHHhccCCCeeecccccccccccccccCCCceEEEE
Confidence 34789999999997 78999999842 33333333444444
No 11
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=69.92 E-value=3.4 Score=38.08 Aligned_cols=100 Identities=15% Similarity=0.119 Sum_probs=58.9
Q ss_pred CEEEEeCCCC--ceeeeee---C----------CC------------------Ceee-cCCCceEEEE-ecceeeeeeec
Q 043027 1 AFEIQNNCIY--TVWAAAN---P----------GG------------------GKEL-HQHQSWHINL-TDAGSIWARTN 45 (199)
Q Consensus 1 t~ti~N~C~~--tVWp~~~---p----------~~------------------g~~L-~~g~s~s~~v-~w~GriWaRtg 45 (199)
.|+|+||=+. +||..++ + .| ...| .+|++.+|.+ .++||||=-.+
T Consensus 2 pl~l~Nns~~~~~vy~yi~G~~~~~~~~v~~~adG~~~~p~~~~~~~~~~~d~aipl~~~G~~~tvtiP~~sgRiyfS~g 81 (353)
T cd09216 2 PLTITNNSGRNNQIYLYVVGTDLQTGRQGWVDADGAAHPVPPGDNVPDGAADYAIPLPSPGDTTTVLPPRMSGRIYFSLG 81 (353)
T ss_pred cEEEEeCCCCCCcEEEEEEeeeCCCCcEEEEeCCCCEecCCcccCCCCCccceeeECCCCCCceEEcccccCcEEEEEcC
Confidence 4889999987 8888762 0 00 1223 2466777777 59999996543
Q ss_pred ccCCCCCCccCcCCCCCCccccCC---CCCCC----cceeEEEeccCCCccceeeccccccCCCceeeecC
Q 043027 46 CNFSADGTGNCESGDCDGVLNCAS---DSSPP----VTLAEYSLNVSKNFDLFNLSLMNGFNIPMEFKGTS 109 (199)
Q Consensus 46 C~~~~~g~~~C~TGdC~g~l~C~~---~g~~p----~TlaEftl~~~~~~d~YdVSlVdG~Nlp~~i~p~~ 109 (199)
= .=.+. ..+ +..+.=.. ..-|- -..+|||++. ..-|-++|.||-|.+||.|+-.+
T Consensus 82 ~----~L~F~-~~~--~~~lv~Ps~~NpsDpN~~~~~~f~EfT~n~--~gl~~N~T~VD~~~~P~~l~l~~ 143 (353)
T cd09216 82 S----KLRFK-VVT--NPALVQPAGWNPSDPNFNILHDWVEFTFND--AGLFCNTTQVDMFSAPLAIGLRG 143 (353)
T ss_pred C----eeEEE-ecC--CCcccCCCCCCCCCCCccceEEEEEEEecC--CceEecccceeeeccceEEEEec
Confidence 1 00111 111 11121111 01121 1348999984 34589999999999999998653
No 12
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=66.17 E-value=4.3 Score=37.59 Aligned_cols=75 Identities=16% Similarity=0.199 Sum_probs=44.2
Q ss_pred CCCceEEEE--ecceeeeeeecccCCCCCCccCcCCCCC-CccccCC--CCCCC----cceeEEEeccCCCccceeeccc
Q 043027 26 QHQSWHINL--TDAGSIWARTNCNFSADGTGNCESGDCD-GVLNCAS--DSSPP----VTLAEYSLNVSKNFDLFNLSLM 96 (199)
Q Consensus 26 ~g~s~s~~v--~w~GriWaRtgC~~~~~g~~~C~TGdC~-g~l~C~~--~g~~p----~TlaEftl~~~~~~d~YdVSlV 96 (199)
+|++.+|.+ -++||||=-.+= .=.|- ...+ + +..+=.. ..-|- -..+|||++. .+-|-++|.|
T Consensus 62 ~G~~~titiP~i~sgRIyfS~g~----~L~F~-~~~~-g~glv~Ps~~NpsDpN~~~~~~f~EfT~n~--~~l~~N~S~V 133 (369)
T cd09220 62 PGSTTTVTIPILAGGRIWFSVDD----KLTFL-LNPG-GPALVEPSVTNPSDPNYNKNWGFCEFTYNS--GQLYANISYV 133 (369)
T ss_pred CCCceeEEcccccceEEEEEcCC----eEEEE-ecCC-CccccCCCcCCCCCCCccceEEEEEEEecC--CceEecccce
Confidence 477788888 489999965321 00111 1111 2 1111110 01111 1348999985 3568999999
Q ss_pred cccCCCceeeec
Q 043027 97 NGFNIPMEFKGT 108 (199)
Q Consensus 97 dG~Nlp~~i~p~ 108 (199)
|-|.+||.|+-.
T Consensus 134 D~~~~P~~l~l~ 145 (369)
T cd09220 134 DFVGLPLGLSLT 145 (369)
T ss_pred eeeccCeEEEEE
Confidence 999999999855
No 13
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=63.83 E-value=12 Score=28.53 Aligned_cols=42 Identities=12% Similarity=0.313 Sum_probs=32.2
Q ss_pred CEEEEeCCCCceeeeee------------------------C-CCCeeecCCCceEEEE-ecce--eeee
Q 043027 1 AFEIQNNCIYTVWAAAN------------------------P-GGGKELHQHQSWHINL-TDAG--SIWA 42 (199)
Q Consensus 1 t~ti~N~C~~tVWp~~~------------------------p-~~g~~L~~g~s~s~~v-~w~G--riWa 42 (199)
+++|+|.-.-+|+.|++ | ++..+.+||+++++.+ ..+| +|+|
T Consensus 23 ~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~~G~r~v~G 92 (101)
T cd00407 23 TLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELVPIGGKRRVYG 92 (101)
T ss_pred EEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEEEccCceEEEc
Confidence 47899999999999961 3 4567889999999988 4443 5554
No 14
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=61.23 E-value=15 Score=28.11 Aligned_cols=43 Identities=14% Similarity=0.277 Sum_probs=32.6
Q ss_pred CEEEEeCCCCceeeeee------------------------C-CCCeeecCCCceEEEE-ecce--eeeee
Q 043027 1 AFEIQNNCIYTVWAAAN------------------------P-GGGKELHQHQSWHINL-TDAG--SIWAR 43 (199)
Q Consensus 1 t~ti~N~C~~tVWp~~~------------------------p-~~g~~L~~g~s~s~~v-~w~G--riWaR 43 (199)
++.|+|.-.-+|+.|++ | ++..+.+||+++++.+ ..+| +|+|-
T Consensus 23 ~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG~r~v~G~ 93 (101)
T TIGR00192 23 SVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVAIGGNRRIYGF 93 (101)
T ss_pred EEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEEccCceEEEcc
Confidence 47899999999999961 3 4557889999999988 4443 55553
No 15
>PRK13202 ureB urease subunit beta; Reviewed
Probab=59.47 E-value=22 Score=27.36 Aligned_cols=43 Identities=14% Similarity=0.091 Sum_probs=32.5
Q ss_pred CEEEEeCCCCceeeeee------------------------C-CCCeeecCCCceEEEE-ecce--eeeee
Q 043027 1 AFEIQNNCIYTVWAAAN------------------------P-GGGKELHQHQSWHINL-TDAG--SIWAR 43 (199)
Q Consensus 1 t~ti~N~C~~tVWp~~~------------------------p-~~g~~L~~g~s~s~~v-~w~G--riWaR 43 (199)
+++|+|.-.-+|+.|++ | ++....+||+++++.+ ..+| +|+|-
T Consensus 24 ~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG~r~v~G~ 94 (104)
T PRK13202 24 QMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVPLGGRREVPGL 94 (104)
T ss_pred EEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEEccCCeEEEcC
Confidence 47899999999999961 3 4557889999999987 4443 55553
No 16
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=59.04 E-value=8.9 Score=35.36 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=20.4
Q ss_pred CCchhhhHhhhcCC--CCcCCCCCCC
Q 043027 158 GATAYSKFFKNLCP--NVYTYPMDDP 181 (199)
Q Consensus 158 ~pt~ys~~fK~~CP--~AYsya~Dd~ 181 (199)
..+.|||++.+.-. .||.|||||-
T Consensus 308 ~tNhYar~vH~~~~dgk~YaF~YDDV 333 (353)
T cd09216 308 VTNHYAKVVHEAMADGKAYGFAFDDV 333 (353)
T ss_pred CchHHHHHHHHhccCCCeeecCcccc
Confidence 34689999999887 6899999994
No 17
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=58.42 E-value=9.9 Score=35.27 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=21.1
Q ss_pred CCchhhhHhhhcCC--CCcCCCCCCC
Q 043027 158 GATAYSKFFKNLCP--NVYTYPMDDP 181 (199)
Q Consensus 158 ~pt~ys~~fK~~CP--~AYsya~Dd~ 181 (199)
..+.|||++.+.-+ .+|.|||||-
T Consensus 319 ~tNhYar~vH~~~~dg~gYaFpYDDV 344 (369)
T cd09220 319 PTNHYSRIVHENNPDGRGYAFPYDDV 344 (369)
T ss_pred CchHHHHHHHHhccCCCeeccccccc
Confidence 45789999999988 7899999995
No 18
>PRK13203 ureB urease subunit beta; Reviewed
Probab=57.68 E-value=19 Score=27.63 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=32.2
Q ss_pred CEEEEeCCCCceeeeee------------------------C-CCCeeecCCCceEEEE-ecce--eeee
Q 043027 1 AFEIQNNCIYTVWAAAN------------------------P-GGGKELHQHQSWHINL-TDAG--SIWA 42 (199)
Q Consensus 1 t~ti~N~C~~tVWp~~~------------------------p-~~g~~L~~g~s~s~~v-~w~G--riWa 42 (199)
++.|+|.-.-+|+.|++ | ++..+.+||+++++.+ ..+| +|+|
T Consensus 23 ~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG~r~v~G 92 (102)
T PRK13203 23 TLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELVPLAGARRVYG 92 (102)
T ss_pred EEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEEEccCceEEEc
Confidence 47899999999999961 3 4567889999999987 4443 5555
No 19
>PRK13201 ureB urease subunit beta; Reviewed
Probab=51.92 E-value=31 Score=27.70 Aligned_cols=43 Identities=19% Similarity=0.320 Sum_probs=32.8
Q ss_pred CEEEEeCCCCceeeeee------------------------C-CCCeeecCCCceEEEE-ecce--eeeee
Q 043027 1 AFEIQNNCIYTVWAAAN------------------------P-GGGKELHQHQSWHINL-TDAG--SIWAR 43 (199)
Q Consensus 1 t~ti~N~C~~tVWp~~~------------------------p-~~g~~L~~g~s~s~~v-~w~G--riWaR 43 (199)
+|.|+|.-.-+|+.|++ | ++..+.+||+++++.+ ..+| +|+|-
T Consensus 23 ~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~igG~r~V~Gf 93 (136)
T PRK13201 23 VIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLVEYAGKRKIFGF 93 (136)
T ss_pred EEEEEeCCCcceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEEEccCceEEEcc
Confidence 57899999999999961 3 4557889999999988 4443 56553
No 20
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=50.81 E-value=24 Score=26.92 Aligned_cols=42 Identities=14% Similarity=0.325 Sum_probs=26.6
Q ss_pred CEEEEeCCCCceeeeee------------------------C-CCCeeecCCCceEEEE-ecce--eeee
Q 043027 1 AFEIQNNCIYTVWAAAN------------------------P-GGGKELHQHQSWHINL-TDAG--SIWA 42 (199)
Q Consensus 1 t~ti~N~C~~tVWp~~~------------------------p-~~g~~L~~g~s~s~~v-~w~G--riWa 42 (199)
+|+|+|.=.-+|+.|.+ | ++..+.+||+++++.+ ..+| +|+|
T Consensus 22 ~l~V~N~GDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRFEPG~~k~V~LV~~gG~r~v~G 91 (100)
T PF00699_consen 22 TLEVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKEVELVPIGGNRRVYG 91 (100)
T ss_dssp EEEEEE-SSS-EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEEE-STT-EE-S
T ss_pred EEEEEeCCCcceEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEECCCCcEEEEEEEccCCeEEEc
Confidence 47899999999999961 3 4567889999999988 4443 4544
No 21
>PRK13204 ureB urease subunit beta; Reviewed
Probab=49.09 E-value=35 Score=28.03 Aligned_cols=43 Identities=12% Similarity=0.141 Sum_probs=33.0
Q ss_pred CEEEEeCCCCceeeeee------------------------C-CCCeeecCCCceEEEE-ecc--eeeeee
Q 043027 1 AFEIQNNCIYTVWAAAN------------------------P-GGGKELHQHQSWHINL-TDA--GSIWAR 43 (199)
Q Consensus 1 t~ti~N~C~~tVWp~~~------------------------p-~~g~~L~~g~s~s~~v-~w~--GriWaR 43 (199)
+|+|+|.-.-+|+.|.. | ++..+.+||+++++.+ ..+ .+|+|-
T Consensus 46 ~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~~gG~r~V~Gf 116 (159)
T PRK13204 46 TLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLVPFAGKRFIFGF 116 (159)
T ss_pred EEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEEEccCceEEEcc
Confidence 57899999999999961 3 4567889999999987 444 356664
No 22
>PRK13198 ureB urease subunit beta; Reviewed
Probab=45.39 E-value=43 Score=27.51 Aligned_cols=43 Identities=7% Similarity=0.126 Sum_probs=32.8
Q ss_pred CEEEEeCCCCceeeeee------------------------C-CCCeeecCCCceEEEE-ecce--eeeee
Q 043027 1 AFEIQNNCIYTVWAAAN------------------------P-GGGKELHQHQSWHINL-TDAG--SIWAR 43 (199)
Q Consensus 1 t~ti~N~C~~tVWp~~~------------------------p-~~g~~L~~g~s~s~~v-~w~G--riWaR 43 (199)
+|.|+|.-.-+|+.|.. | ++..+.+||+++++.+ ..+| +|+|-
T Consensus 51 ~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~~gG~r~V~Gf 121 (158)
T PRK13198 51 KVKVRNTGDRPIQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLIPFGGKQTLYGF 121 (158)
T ss_pred EEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEEEccCceEEEcc
Confidence 47899999999999961 3 4567889999999988 4443 56653
No 23
>PRK13205 ureB urease subunit beta; Reviewed
Probab=43.66 E-value=38 Score=27.83 Aligned_cols=43 Identities=21% Similarity=0.190 Sum_probs=32.3
Q ss_pred CEEEEeCCCCceeeeee------------------------C-CCCeeecCCCceEEEE-ecc--eeeeee
Q 043027 1 AFEIQNNCIYTVWAAAN------------------------P-GGGKELHQHQSWHINL-TDA--GSIWAR 43 (199)
Q Consensus 1 t~ti~N~C~~tVWp~~~------------------------p-~~g~~L~~g~s~s~~v-~w~--GriWaR 43 (199)
+|+|+|.-.-+|+.|++ | ++....+||+++++.+ ... .+|+|-
T Consensus 23 ~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV~igG~R~V~Gf 93 (162)
T PRK13205 23 TIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLVAIGGDRIVAGF 93 (162)
T ss_pred EEEEEeCCCCceEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEEEccCceEEEcc
Confidence 57899999999999961 3 4557889999999987 443 355553
No 24
>PF00947 Pico_P2A: Picornavirus core protein 2A; InterPro: IPR000081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This domain defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies 3CA and 3CB. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral 3C cysteine protease []. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0016032 viral reproduction; PDB: 2HRV_B 1Z8R_A.
Probab=42.13 E-value=9.9 Score=30.21 Aligned_cols=18 Identities=50% Similarity=1.193 Sum_probs=14.0
Q ss_pred CCccCcCCCCCCccccCC
Q 043027 52 GTGNCESGDCDGVLNCAS 69 (199)
Q Consensus 52 g~~~C~TGdC~g~l~C~~ 69 (199)
|.+.|+-|||||.|.|+-
T Consensus 83 g~Gp~~PGdCGg~L~C~H 100 (127)
T PF00947_consen 83 GEGPAEPGDCGGILRCKH 100 (127)
T ss_dssp EE-SSSTT-TCSEEEETT
T ss_pred ecccCCCCCCCceeEeCC
Confidence 457899999999999984
No 25
>PF06282 DUF1036: Protein of unknown function (DUF1036); InterPro: IPR009380 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=40.69 E-value=34 Score=26.31 Aligned_cols=31 Identities=13% Similarity=0.070 Sum_probs=25.3
Q ss_pred EEEEeCCCCceeeeee--------CCCCeeecCCCceEE
Q 043027 2 FEIQNNCIYTVWAAAN--------PGGGKELHQHQSWHI 32 (199)
Q Consensus 2 ~ti~N~C~~tVWp~~~--------p~~g~~L~~g~s~s~ 32 (199)
|+|-|+-++.|+.|+. ..|.+.|+||+-.++
T Consensus 6 ~~vCN~T~~~v~vAigy~~~~~W~seGWw~i~pg~C~~v 44 (115)
T PF06282_consen 6 LRVCNRTSSPVGVAIGYRDGGGWVSEGWWRIDPGECATV 44 (115)
T ss_pred cEEecCCCCeEEEEEEEEcCCCcEEeeeEEeCCCceEEe
Confidence 7899999999999983 146789999987655
No 26
>PRK13986 urease subunit alpha; Provisional
Probab=39.98 E-value=54 Score=28.48 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=33.3
Q ss_pred CEEEEeCCCCceeeeee------------------------C-CCCeeecCCCceEEEE-ecce--eeeee
Q 043027 1 AFEIQNNCIYTVWAAAN------------------------P-GGGKELHQHQSWHINL-TDAG--SIWAR 43 (199)
Q Consensus 1 t~ti~N~C~~tVWp~~~------------------------p-~~g~~L~~g~s~s~~v-~w~G--riWaR 43 (199)
+++|+|.-.-+|+.|++ | ++..+.+||+++++.+ ..+| +|+|-
T Consensus 128 ~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV~~gG~r~v~G~ 198 (225)
T PRK13986 128 SVKVKNVGDRPVQVGSHFHFFEVNRCLEFDREKAFGKRLDIASGTAVRFEPGEEKSVELIDIGGNRRIFGF 198 (225)
T ss_pred EEEEEeCCCCceeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEEEccCceEEecC
Confidence 47899999999999961 3 4567889999999987 5444 56664
No 27
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=37.22 E-value=11 Score=30.60 Aligned_cols=10 Identities=30% Similarity=0.770 Sum_probs=8.1
Q ss_pred cccccCCCce
Q 043027 95 LMNGFNIPME 104 (199)
Q Consensus 95 lVdG~Nlp~~ 104 (199)
|||||||=..
T Consensus 2 lIDGYNli~~ 11 (166)
T PF05991_consen 2 LIDGYNLIHA 11 (166)
T ss_pred eEcchhhhCC
Confidence 7999998655
No 28
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=36.19 E-value=33 Score=23.59 Aligned_cols=21 Identities=19% Similarity=0.515 Sum_probs=15.5
Q ss_pred eeecCCCceEEEE-------ecceeeee
Q 043027 22 KELHQHQSWHINL-------TDAGSIWA 42 (199)
Q Consensus 22 ~~L~~g~s~s~~v-------~w~GriWa 42 (199)
|+|.||+..++.+ --+|++|-
T Consensus 2 ~~L~~g~~~~lr~~~~~~l~v~~G~vWl 29 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQRLRVESGRVWL 29 (63)
T ss_pred EEeCCCceEEeEcCCCcEEEEccccEEE
Confidence 6788888887776 23788886
No 29
>cd05468 pVHL von Hippel-Landau (pVHL) tumor suppressor protein. von Hippel-Landau (pVHL) protein, the gene product of VHL, is a critical regulator of the ubiquitous oxygen-sensing pathway. It is conserved throughout evolution, as its homologs are found in organisms ranging from mammals to the Drosophila melanogaster, Anopheles gambiae insects and the Caenorhabditis elegans nematode. pVHL acts as the substrate recognition component of an E3 ubiquitin ligase complex. Several proteins have been identified as pVHL-binding proteins that are subject to ubiquitin-mediated proteolysis; the best characterized putative substrates are the alpha subunits of the hypoxia-inducible factor (HIF1alpha, HIF2alpha, and HIF3alpha). In addition to HIF degradation, pVHL has been implicated to be involved in HIF independent cellular processes. Germline VHL mutations cause renal cell carcinomas, hemangioblastomas and pheochromocytomas in humans. pVHL can bind to and direct the proper deposition of fibronecti
Probab=32.29 E-value=79 Score=25.04 Aligned_cols=43 Identities=16% Similarity=0.058 Sum_probs=32.0
Q ss_pred CEEEEeCCCCceeeeeeCCCC-----eeecCCCceEEEE-ecceeeeeeec
Q 043027 1 AFEIQNNCIYTVWAAANPGGG-----KELHQHQSWHINL-TDAGSIWARTN 45 (199)
Q Consensus 1 t~ti~N~C~~tVWp~~~p~~g-----~~L~~g~s~s~~v-~w~GriWaRtg 45 (199)
.++|+|+.+.+|-+=++--.| ..|+||+.. .+ ++.|..|--..
T Consensus 10 ~v~F~N~t~~~v~~~Wid~~G~~~~Y~~l~pg~~~--~~~Ty~~H~W~~rd 58 (141)
T cd05468 10 TVRFVNRTDRPVELYWIDYDGKPVSYGTLQPGETV--RQNTYVGHPWLFRD 58 (141)
T ss_pred EEEEEeCCCCeEEEEEECCCCCEEEeeeeCCCCEE--eecccCCCcEEEEe
Confidence 378999999999998875222 479999975 44 66777776553
No 30
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=27.25 E-value=86 Score=21.66 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=16.3
Q ss_pred CEEEEeCCCCceeeee----eCCCC---------eeecCCCceEEEE
Q 043027 1 AFEIQNNCIYTVWAAA----NPGGG---------KELHQHQSWHINL 34 (199)
Q Consensus 1 t~ti~N~C~~tVWp~~----~p~~g---------~~L~~g~s~s~~v 34 (199)
+++|.|...-++--.. +|.|. ..|+||++.++.+
T Consensus 10 ~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~ 56 (78)
T PF10633_consen 10 TLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTF 56 (78)
T ss_dssp EEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEE
T ss_pred EEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEE
Confidence 4788999877654332 34322 2689998877655
No 31
>COG3688 Predicted RNA-binding protein containing a PIN domain [General function prediction only]
Probab=22.76 E-value=30 Score=28.80 Aligned_cols=10 Identities=30% Similarity=0.893 Sum_probs=8.0
Q ss_pred eeccccccCC
Q 043027 92 NLSLMNGFNI 101 (199)
Q Consensus 92 dVSlVdG~Nl 101 (199)
.|=||||||+
T Consensus 4 ~iLLVDGYNm 13 (173)
T COG3688 4 RILLVDGYNM 13 (173)
T ss_pred eEEEeccchh
Confidence 3569999996
No 32
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=22.44 E-value=1.1e+02 Score=21.90 Aligned_cols=34 Identities=9% Similarity=0.006 Sum_probs=23.2
Q ss_pred CEEEEeCCCCceeeeeeC---------CCCeeecCCCceEEEE
Q 043027 1 AFEIQNNCIYTVWAAANP---------GGGKELHQHQSWHINL 34 (199)
Q Consensus 1 t~ti~N~C~~tVWp~~~p---------~~g~~L~~g~s~s~~v 34 (199)
+|+|+|.-.++|---+.. ..--.|+||++..|.|
T Consensus 23 ~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I 65 (109)
T PF00635_consen 23 ELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITI 65 (109)
T ss_dssp EEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEE
T ss_pred EEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEE
Confidence 478999999887766632 1234689999999887
Done!