Query 043029
Match_columns 109
No_of_seqs 158 out of 1218
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 12:07:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043029.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043029hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00018 AP2 DNA-binding domain 99.9 6.8E-23 1.5E-27 126.9 7.8 61 28-90 1-61 (61)
2 smart00380 AP2 DNA-binding dom 99.9 1.1E-22 2.4E-27 127.3 8.6 64 29-94 1-64 (64)
3 PHA00280 putative NHN endonucl 99.7 1.4E-16 2.9E-21 111.7 7.5 68 13-85 52-120 (121)
4 PF00847 AP2: AP2 domain; Int 99.3 4.1E-12 8.8E-17 76.7 6.2 53 28-81 1-56 (56)
5 PF14657 Integrase_AP2: AP2-li 84.2 5.8 0.00012 22.6 5.6 38 40-79 1-42 (46)
6 PHA02601 int integrase; Provis 78.1 4.7 0.0001 31.0 4.6 45 32-78 2-46 (333)
7 PF08846 DUF1816: Domain of un 73.1 8.1 0.00018 24.6 3.9 38 40-79 9-46 (68)
8 PF08471 Ribonuc_red_2_N: Clas 72.1 5 0.00011 27.1 2.9 21 58-78 70-90 (93)
9 PF05036 SPOR: Sporulation rel 71.0 3.4 7.3E-05 24.7 1.8 22 54-75 44-65 (76)
10 cd00801 INT_P4 Bacteriophage P 67.7 14 0.00031 28.0 5.1 39 39-79 10-50 (357)
11 PF13356 DUF4102: Domain of un 65.0 29 0.00063 22.1 5.4 42 35-78 29-74 (89)
12 PF07913 DUF1678: Protein of u 58.6 12 0.00026 28.1 3.0 40 25-64 28-73 (201)
13 PRK09692 integrase; Provisiona 56.9 47 0.001 26.5 6.5 44 33-78 33-82 (413)
14 PF10729 CedA: Cell division a 47.1 39 0.00085 21.8 3.6 39 27-70 30-68 (80)
15 PF09954 DUF2188: Uncharacteri 43.8 69 0.0015 19.0 4.8 36 36-77 6-41 (62)
16 PF14112 DUF4284: Domain of un 40.9 18 0.00039 24.9 1.5 17 55-71 3-19 (122)
17 COG2185 Sbm Methylmalonyl-CoA 35.7 31 0.00068 24.9 2.1 18 54-71 42-59 (143)
18 PRK10113 cell division modulat 33.7 42 0.00091 21.6 2.2 39 28-71 31-69 (80)
19 COG0197 RplP Ribosomal protein 29.0 1E+02 0.0022 22.3 3.9 35 41-80 96-130 (146)
20 PF13773 DUF4170: Domain of un 28.5 62 0.0013 20.7 2.3 24 54-77 25-48 (69)
21 PLN00062 TATA-box-binding prot 27.9 2.5E+02 0.0054 20.7 7.0 48 27-79 33-81 (179)
22 cd04516 TBP_eukaryotes eukaryo 27.4 2.5E+02 0.0054 20.5 7.0 48 27-79 33-81 (174)
23 PF07384 DUF1497: Protein of u 27.4 25 0.00053 21.3 0.3 33 58-90 1-33 (59)
24 PRK10927 essential cell divisi 26.1 1.2E+02 0.0025 24.8 4.1 34 41-76 273-306 (319)
25 PF12752 SUZ: SUZ domain; Int 25.6 1.1E+02 0.0023 18.4 3.0 23 60-82 36-58 (59)
26 TIGR01164 rplP_bact ribosomal 23.3 1.7E+02 0.0037 20.3 4.1 34 40-78 91-124 (126)
27 PF11132 SplA: Transcriptional 23.1 66 0.0014 20.8 1.8 15 59-73 58-72 (75)
28 PRK09203 rplP 50S ribosomal pr 22.9 1.6E+02 0.0034 20.8 3.8 35 40-79 92-126 (138)
29 PF00352 TBP: Transcription fa 22.6 2.1E+02 0.0046 18.0 4.8 46 28-78 36-82 (86)
30 PF05406 WGR: WGR domain; Int 21.8 1.1E+02 0.0025 19.0 2.7 30 58-87 49-80 (81)
31 cd04517 TLF TBP-like factors ( 21.5 3.3E+02 0.0071 19.8 6.4 45 29-78 35-80 (174)
32 cd08001 WGR_PARP1_like WGR dom 21.3 2.5E+02 0.0054 18.4 4.6 36 55-90 56-93 (104)
33 PF14882 GHL12: Hypothetical g 20.8 73 0.0016 19.0 1.5 12 60-71 39-50 (53)
34 PF10003 DUF2244: Integral mem 20.6 1.7E+02 0.0037 20.3 3.7 24 52-75 114-137 (140)
No 1
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=99.89 E-value=6.8e-23 Score=126.86 Aligned_cols=61 Identities=62% Similarity=1.129 Sum_probs=56.9
Q ss_pred CCeeeeEECCCCceEEEEeeCCCCCCcEEecCCCCCHHHHHHHHHHHHHHhhCCCCCCCCCCC
Q 043029 28 KSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNFPHL 90 (109)
Q Consensus 28 s~yrGV~~~~~gkw~A~I~~~~~~~Gk~~~LG~f~t~eeAA~AYD~aa~~l~G~~a~~NFp~~ 90 (109)
|+|+||+++++|+|+|+|+++. .|++++||+|+|+|||+.|||.++++++|.++.+|||++
T Consensus 1 s~~~GV~~~~~gkw~A~I~~~~--~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~ 61 (61)
T cd00018 1 SKYRGVRQRPWGKWVAEIRDPS--GGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61 (61)
T ss_pred CCccCEEECCCCcEEEEEEeCC--CCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence 6899999888899999999964 369999999999999999999999999999999999974
No 2
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=99.89 E-value=1.1e-22 Score=127.27 Aligned_cols=64 Identities=63% Similarity=1.132 Sum_probs=59.8
Q ss_pred CeeeeEECCCCceEEEEeeCCCCCCcEEecCCCCCHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCC
Q 043029 29 SFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNFPHLIGSK 94 (109)
Q Consensus 29 ~yrGV~~~~~gkw~A~I~~~~~~~Gk~~~LG~f~t~eeAA~AYD~aa~~l~G~~a~~NFp~~~~~~ 94 (109)
+|+||+++++|+|+|+|+++. +|++++||+|+|+||||.|||.++++++|.++.+|||+..|++
T Consensus 1 ~~kGV~~~~~gkw~A~I~~~~--~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~~ 64 (64)
T smart00380 1 KYRGVRQRPWGKWVAEIRDPS--KGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYDS 64 (64)
T ss_pred CEeeEEeCCCCeEEEEEEecC--CCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCCC
Confidence 589999888899999999966 6799999999999999999999999999999999999998863
No 3
>PHA00280 putative NHN endonuclease
Probab=99.68 E-value=1.4e-16 Score=111.69 Aligned_cols=68 Identities=15% Similarity=0.177 Sum_probs=56.0
Q ss_pred chhhhhhhcccCCCCCCeeeeEECC-CCceEEEEeeCCCCCCcEEecCCCCCHHHHHHHHHHHHHHhhCCCCCC
Q 043029 13 SSDVACFNMQLRRLQKSFRGVRKRP-WGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKL 85 (109)
Q Consensus 13 ~~~~~~~~~~~~~~~s~yrGV~~~~-~gkw~A~I~~~~~~~Gk~~~LG~f~t~eeAA~AYD~aa~~l~G~~a~~ 85 (109)
.++...+....+.++|+|+||++.+ .|||+|+|.+ +||+++||.|+++|+|+.||+ ++.+|||+++..
T Consensus 52 ~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~----~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~~ 120 (121)
T PHA00280 52 PKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTA----EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFARF 120 (121)
T ss_pred HHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEEE----CCEEEEcCCCCCHHHHHHHHH-HHHHHhhccccC
Confidence 3444444445567889999999765 4999999998 679999999999999999997 778999999863
No 4
>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes. Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.
Probab=99.34 E-value=4.1e-12 Score=76.66 Aligned_cols=53 Identities=26% Similarity=0.409 Sum_probs=45.2
Q ss_pred CCeeeeEECC-CCceEEEEeeCCCCCC--cEEecCCCCCHHHHHHHHHHHHHHhhCC
Q 043029 28 KSFRGVRKRP-WGKFAAEIRDGKKKTG--ARVWLGTYDTPEDAALAYDRAAFKIHGQ 81 (109)
Q Consensus 28 s~yrGV~~~~-~gkw~A~I~~~~~~~G--k~~~LG~f~t~eeAA~AYD~aa~~l~G~ 81 (109)
|+|+||++.+ .++|+|+|++... +| +.++||.|++++||++|++.+++.++|+
T Consensus 1 s~~~GV~~~~~~~~W~a~i~~~~~-~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e 56 (56)
T PF00847_consen 1 SGYKGVSWDKRRGRWRAQIRVWSE-NGKRKRFSVGKFGFEEEAKRAAIEARKELEGE 56 (56)
T ss_dssp SSSTTEEEETTTTEEEEEEEECCC-TTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred CCcEEEEEcCCCCEEEEEEEEccc-CcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence 6899999766 5999999998422 32 8999999999999999999999999875
No 5
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=84.25 E-value=5.8 Score=22.60 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=28.0
Q ss_pred ceEEEEe--eCCCCCC--cEEecCCCCCHHHHHHHHHHHHHHhh
Q 043029 40 KFAAEIR--DGKKKTG--ARVWLGTYDTPEDAALAYDRAAFKIH 79 (109)
Q Consensus 40 kw~A~I~--~~~~~~G--k~~~LG~f~t~eeAA~AYD~aa~~l~ 79 (109)
+|...|. .+. .| ++++-+-|.|..||-.+...+...+.
T Consensus 1 ~w~~~v~g~~~~--~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~ 42 (46)
T PF14657_consen 1 TWYYRVYGYDDE--TGKRKQKTKRGFKTKKEAEKALAKIEAELE 42 (46)
T ss_pred CEEEEEEEEECC--CCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence 5778883 221 34 56778889999999999988777654
No 6
>PHA02601 int integrase; Provisional
Probab=78.05 E-value=4.7 Score=30.99 Aligned_cols=45 Identities=24% Similarity=0.295 Sum_probs=30.5
Q ss_pred eeEECCCCceEEEEeeCCCCCCcEEecCCCCCHHHHHHHHHHHHHHh
Q 043029 32 GVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKI 78 (109)
Q Consensus 32 GV~~~~~gkw~A~I~~~~~~~Gk~~~LG~f~t~eeAA~AYD~aa~~l 78 (109)
+|+..+.|+|++++.... ..|+++.. +|.|..||....+.....+
T Consensus 2 ~~~~~~~g~w~~~~~~~~-~~g~r~~~-~f~tk~eA~~~~~~~~~~~ 46 (333)
T PHA02601 2 AVRKLKDGKWLCEIYPNG-RDGKRIRK-RFATKGEALAFENYTMAEV 46 (333)
T ss_pred ceEEcCCCCEEEEEEECC-CCCchhhh-hhcCHHHHHHHHHHHHHhc
Confidence 466666789999998632 14676654 6999999876665544433
No 7
>PF08846 DUF1816: Domain of unknown function (DUF1816); InterPro: IPR014945 Q4C9H3 from SWISSPROT is associated with the IPR008213 from INTERPRO domain suggesting this protein could have a role in phycobilisomes.
Probab=73.09 E-value=8.1 Score=24.56 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=28.3
Q ss_pred ceEEEEeeCCCCCCcEEecCCCCCHHHHHHHHHHHHHHhh
Q 043029 40 KFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIH 79 (109)
Q Consensus 40 kw~A~I~~~~~~~Gk~~~LG~f~t~eeAA~AYD~aa~~l~ 79 (109)
.|-++|.-.... -..|.|-|++.+||..+..--...|-
T Consensus 9 aWWveI~T~~P~--ctYyFGPF~s~~eA~~~~~gyieDL~ 46 (68)
T PF08846_consen 9 AWWVEIETQNPN--CTYYFGPFDSREEAEAALPGYIEDLE 46 (68)
T ss_pred cEEEEEEcCCCC--EEEEeCCcCCHHHHHHHhccHHHHHH
Confidence 477899865543 58899999999999988755444443
No 8
>PF08471 Ribonuc_red_2_N: Class II vitamin B12-dependent ribonucleotide reductase; InterPro: IPR013678 This domain is found to the N terminus of the ribonucleotide reductase barrel domain (IPR000788 from INTERPRO). It occurs in bacterial class II ribonucleotide reductase proteins which depend upon coenzyme B12 (deoxyadenosylcobalamine) []. ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0050897 cobalt ion binding, 0055114 oxidation-reduction process
Probab=72.11 E-value=5 Score=27.08 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=18.2
Q ss_pred cCCCCCHHHHHHHHHHHHHHh
Q 043029 58 LGTYDTPEDAALAYDRAAFKI 78 (109)
Q Consensus 58 LG~f~t~eeAA~AYD~aa~~l 78 (109)
-|+|+|+|||..=||.....|
T Consensus 70 ~GYF~t~eDA~~FydEl~~mL 90 (93)
T PF08471_consen 70 GGYFATEEDAEAFYDELTYML 90 (93)
T ss_pred CCCcCCHHHHHHHHHHHHHHH
Confidence 499999999999999877655
No 9
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=71.00 E-value=3.4 Score=24.68 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=18.7
Q ss_pred cEEecCCCCCHHHHHHHHHHHH
Q 043029 54 ARVWLGTYDTPEDAALAYDRAA 75 (109)
Q Consensus 54 k~~~LG~f~t~eeAA~AYD~aa 75 (109)
-++.+|.|++.+||..+.....
T Consensus 44 yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 44 YRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEEECCECTCCHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHh
Confidence 4788999999999998887655
No 10
>cd00801 INT_P4 Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. They share the same fold in their catalytic domain and the overall reaction mechanism with the superfamily of DNA breaking-rejoining enzymes. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes.
Probab=67.73 E-value=14 Score=27.96 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=27.4
Q ss_pred CceEEEEeeCCCCCCcEEecCCCC--CHHHHHHHHHHHHHHhh
Q 043029 39 GKFAAEIRDGKKKTGARVWLGTYD--TPEDAALAYDRAAFKIH 79 (109)
Q Consensus 39 gkw~A~I~~~~~~~Gk~~~LG~f~--t~eeAA~AYD~aa~~l~ 79 (109)
+.|+.++..+++. +++.||.|+ +.++|..........+.
T Consensus 10 ~~~~~~~~~~g~~--~~~~~g~~~~~~~~~A~~~~~~~~~~~~ 50 (357)
T cd00801 10 KSWRFRYRLAGKR--KRLTLGSYPAVSLAEAREKADEARALLA 50 (357)
T ss_pred EEEEEEeccCCce--eEEeCcCCCCCCHHHHHHHHHHHHHHHH
Confidence 4599998886532 567899996 67777777666555553
No 11
>PF13356 DUF4102: Domain of unknown function (DUF4102); PDB: 3JU0_A 3RMP_A 3JTZ_A 2KJ8_A.
Probab=65.02 E-value=29 Score=22.06 Aligned_cols=42 Identities=24% Similarity=0.229 Sum_probs=26.0
Q ss_pred ECCCC--ceEEEEeeCCCCCCcEEecCCCCC--HHHHHHHHHHHHHHh
Q 043029 35 KRPWG--KFAAEIRDGKKKTGARVWLGTYDT--PEDAALAYDRAAFKI 78 (109)
Q Consensus 35 ~~~~g--kw~A~I~~~~~~~Gk~~~LG~f~t--~eeAA~AYD~aa~~l 78 (109)
..+.| .|..+...+++ -+++-||.|+. ..||-.........+
T Consensus 29 v~~~G~kt~~~r~~~~gk--~~~~~lG~~p~~sl~~AR~~a~~~~~~~ 74 (89)
T PF13356_consen 29 VTPSGSKTFYFRYRINGK--RRRITLGRYPELSLAEAREKARELRALV 74 (89)
T ss_dssp E-TTS-EEEEEEEEETTE--EEEEEEEECTTS-HHHHHHHHHHHHHHH
T ss_pred EEeCCCeEEEEEEEecce--EEEeccCCCccCCHHHHHHHHHHHHHHH
Confidence 34443 48888887663 26789999986 556555554443333
No 12
>PF07913 DUF1678: Protein of unknown function (DUF1678); InterPro: IPR012465 This family is composed of uncharacterised proteins expressed by Methanopyrus kandleri, a hyperthermophilic archaeon.
Probab=58.59 E-value=12 Score=28.10 Aligned_cols=40 Identities=28% Similarity=0.375 Sum_probs=29.5
Q ss_pred CCCCCeeeeEECC-CC-----ceEEEEeeCCCCCCcEEecCCCCCH
Q 043029 25 RLQKSFRGVRKRP-WG-----KFAAEIRDGKKKTGARVWLGTYDTP 64 (109)
Q Consensus 25 ~~~s~yrGV~~~~-~g-----kw~A~I~~~~~~~Gk~~~LG~f~t~ 64 (109)
+++.-+-||+.+. +| -|.|++++.+.+.|+++|||--+++
T Consensus 28 Rg~~P~levtYRtvnG~tcGPYYvARWr~~r~~~GRTlYLGk~eNe 73 (201)
T PF07913_consen 28 RGKKPSLEVTYRTVNGSTCGPYYVARWRDSRFERGRTLYLGKPENE 73 (201)
T ss_pred cccCCccceeEEecCCcccCcceeeeecCccccCCceeeccCCcCc
Confidence 4555677776543 33 2889999877789999999988774
No 13
>PRK09692 integrase; Provisional
Probab=56.90 E-value=47 Score=26.54 Aligned_cols=44 Identities=18% Similarity=0.097 Sum_probs=26.7
Q ss_pred eEECCCC--ceEEEEeeCCCCCCcE--EecCCCC--CHHHHHHHHHHHHHHh
Q 043029 33 VRKRPWG--KFAAEIRDGKKKTGAR--VWLGTYD--TPEDAALAYDRAAFKI 78 (109)
Q Consensus 33 V~~~~~g--kw~A~I~~~~~~~Gk~--~~LG~f~--t~eeAA~AYD~aa~~l 78 (109)
|+..+.| .|+.+.+.+. +|++ +-||.|+ |..||-.+...+...+
T Consensus 33 l~v~~~G~k~~~~rY~~~~--~gk~~~~~lG~yp~~sl~~AR~~a~~~~~~~ 82 (413)
T PRK09692 33 LLIKSSGSKIWQFRYYRPL--TKTRAKKSFGPYPSVTLADARNYRAESRSLL 82 (413)
T ss_pred EEEECCCcEEEEEEEecCC--CCceeeeeCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3444554 4888876432 2343 6899999 7777766555544444
No 14
>PF10729 CedA: Cell division activator CedA; InterPro: IPR019666 CedA is made up of four antiparallel beta-strands and an alpha-helix. It activates cell division by inhibiting chromosome over-replication. This is mediated by binding to dsDNA via the beta-sheet [, ]. ; GO: 0003677 DNA binding, 0051301 cell division; PDB: 2BN8_A 2D35_A.
Probab=47.12 E-value=39 Score=21.80 Aligned_cols=39 Identities=26% Similarity=0.293 Sum_probs=25.2
Q ss_pred CCCeeeeEECCCCceEEEEeeCCCCCCcEEecCCCCCHHHHHHH
Q 043029 27 QKSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALA 70 (109)
Q Consensus 27 ~s~yrGV~~~~~gkw~A~I~~~~~~~Gk~~~LG~f~t~eeAA~A 70 (109)
--+|+-|...+ |||+|.+.... .-.---.|..+|.|-+-
T Consensus 30 ~dgfrdvw~lr-gkyvafvl~ge----~f~rsp~fs~pesaqrw 68 (80)
T PF10729_consen 30 MDGFRDVWQLR-GKYVAFVLMGE----HFRRSPAFSVPESAQRW 68 (80)
T ss_dssp TTTECCECCCC-CEEEEEEESSS-----EEE---BSSHHHHHHH
T ss_pred cccccceeeec-cceEEEEEecc----hhccCCCcCCcHHHHHH
Confidence 35788886444 99999998743 34445678888887664
No 15
>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function.
Probab=43.78 E-value=69 Score=19.01 Aligned_cols=36 Identities=28% Similarity=0.198 Sum_probs=24.3
Q ss_pred CCCCceEEEEeeCCCCCCcEEecCCCCCHHHHHHHHHHHHHH
Q 043029 36 RPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFK 77 (109)
Q Consensus 36 ~~~gkw~A~I~~~~~~~Gk~~~LG~f~t~eeAA~AYD~aa~~ 77 (109)
+..+.|..+.-. ...-..+|+|.+||..+=...+..
T Consensus 6 ~~~~~W~v~~eg------~~ra~~~~~Tk~eAi~~Ar~~a~~ 41 (62)
T PF09954_consen 6 REDGGWAVKKEG------AKRASKTFDTKAEAIEAARELAKN 41 (62)
T ss_pred cCCCCceEEeCC------CcccccccCcHHHHHHHHHHHHHh
Confidence 344778877743 344479999999998775555544
No 16
>PF14112 DUF4284: Domain of unknown function (DUF4284)
Probab=40.89 E-value=18 Score=24.93 Aligned_cols=17 Identities=12% Similarity=0.743 Sum_probs=13.1
Q ss_pred EEecCCCCCHHHHHHHH
Q 043029 55 RVWLGTYDTPEDAALAY 71 (109)
Q Consensus 55 ~~~LG~f~t~eeAA~AY 71 (109)
.+|||+|.+++|--.=.
T Consensus 3 siWiG~f~s~~el~~Y~ 19 (122)
T PF14112_consen 3 SIWIGNFKSEDELEEYF 19 (122)
T ss_pred EEEEecCCCHHHHHHHh
Confidence 68999999987755443
No 17
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=35.72 E-value=31 Score=24.86 Aligned_cols=18 Identities=39% Similarity=0.551 Sum_probs=15.8
Q ss_pred cEEecCCCCCHHHHHHHH
Q 043029 54 ARVWLGTYDTPEDAALAY 71 (109)
Q Consensus 54 k~~~LG~f~t~eeAA~AY 71 (109)
.-+++|.|.|+|||+++-
T Consensus 42 eVi~~g~~~tp~e~v~aA 59 (143)
T COG2185 42 EVINLGLFQTPEEAVRAA 59 (143)
T ss_pred eEEecCCcCCHHHHHHHH
Confidence 578999999999999864
No 18
>PRK10113 cell division modulator; Provisional
Probab=33.66 E-value=42 Score=21.61 Aligned_cols=39 Identities=28% Similarity=0.322 Sum_probs=26.6
Q ss_pred CCeeeeEECCCCceEEEEeeCCCCCCcEEecCCCCCHHHHHHHH
Q 043029 28 KSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAY 71 (109)
Q Consensus 28 s~yrGV~~~~~gkw~A~I~~~~~~~Gk~~~LG~f~t~eeAA~AY 71 (109)
-+|+-|...+ |||+|.+.... .-.---.|..+|.|-+--
T Consensus 31 d~frDVW~Lr-GKYVAFvl~ge----~FrRSPaFs~PEsAQRWA 69 (80)
T PRK10113 31 DSFRDVWMLR-GKYVAFVLMGE----SFLRSPAFSVPESAQRWA 69 (80)
T ss_pred cchhhhheec-cceEEEEEech----hhccCCccCCcHHHHHHH
Confidence 5677776444 99999998743 233346788888877643
No 19
>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]
Probab=28.98 E-value=1e+02 Score=22.32 Aligned_cols=35 Identities=29% Similarity=0.181 Sum_probs=27.9
Q ss_pred eEEEEeeCCCCCCcEEecCCCCCHHHHHHHHHHHHHHhhC
Q 043029 41 FAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHG 80 (109)
Q Consensus 41 w~A~I~~~~~~~Gk~~~LG~f~t~eeAA~AYD~aa~~l~G 80 (109)
|.|+|.. |+.++-=....++.|..|.-.|+.+|=+
T Consensus 96 waArVkp-----G~vlfei~g~~e~~A~EAlr~Aa~KLP~ 130 (146)
T COG0197 96 WAARVKP-----GRVLFEIAGVPEELAREALRRAAAKLPV 130 (146)
T ss_pred EEEEecC-----CcEEEEEecCcHHHHHHHHHHHhhcCCC
Confidence 9999974 4677777778888899999888887744
No 20
>PF13773 DUF4170: Domain of unknown function (DUF4170)
Probab=28.50 E-value=62 Score=20.66 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=19.6
Q ss_pred cEEecCCCCCHHHHHHHHHHHHHH
Q 043029 54 ARVWLGTYDTPEDAALAYDRAAFK 77 (109)
Q Consensus 54 k~~~LG~f~t~eeAA~AYD~aa~~ 77 (109)
+---+|.|++-++|..|+...+.+
T Consensus 25 ~~diVG~fp~y~~A~~aWrakAq~ 48 (69)
T PF13773_consen 25 ALDIVGIFPDYASAYAAWRAKAQR 48 (69)
T ss_pred cceEEecCCChHHHHHHHHHHHhC
Confidence 445689999999999999877654
No 21
>PLN00062 TATA-box-binding protein; Provisional
Probab=27.91 E-value=2.5e+02 Score=20.68 Aligned_cols=48 Identities=31% Similarity=0.248 Sum_probs=34.9
Q ss_pred CCCeeeeEECC-CCceEEEEeeCCCCCCcEEecCCCCCHHHHHHHHHHHHHHhh
Q 043029 27 QKSFRGVRKRP-WGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIH 79 (109)
Q Consensus 27 ~s~yrGV~~~~-~gkw~A~I~~~~~~~Gk~~~LG~f~t~eeAA~AYD~aa~~l~ 79 (109)
..+|-||..|- .-+-.+.|.. .||-+--|. .++|||..|.++.+..|.
T Consensus 33 Pe~fpgli~Rl~~Pk~t~lIF~----SGKiviTGa-ks~e~a~~a~~~~~~~L~ 81 (179)
T PLN00062 33 PKRFAAVIMRIREPKTTALIFA----SGKMVCTGA-KSEHDSKLAARKYARIIQ 81 (179)
T ss_pred CccCcEEEEEeCCCcEEEEEEC----CCeEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 35789987554 3556777776 667776664 688999999988877773
No 22
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=27.43 E-value=2.5e+02 Score=20.52 Aligned_cols=48 Identities=31% Similarity=0.270 Sum_probs=35.3
Q ss_pred CCCeeeeEECC-CCceEEEEeeCCCCCCcEEecCCCCCHHHHHHHHHHHHHHhh
Q 043029 27 QKSFRGVRKRP-WGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIH 79 (109)
Q Consensus 27 ~s~yrGV~~~~-~gkw~A~I~~~~~~~Gk~~~LG~f~t~eeAA~AYD~aa~~l~ 79 (109)
..+|-|+..|- .-+-.+.|+. .||-+--|. .++|||..|.++.+..|.
T Consensus 33 Pe~fpgli~Rl~~Pk~t~lIF~----SGKiviTGa-ks~e~a~~a~~~i~~~L~ 81 (174)
T cd04516 33 PKRFAAVIMRIREPKTTALIFS----SGKMVCTGA-KSEDDSKLAARKYARIIQ 81 (174)
T ss_pred CccCcEEEEEeCCCcEEEEEEC----CCeEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 36788987554 3566778877 668877786 578889989888877773
No 23
>PF07384 DUF1497: Protein of unknown function (DUF1497); InterPro: IPR009972 This entry is represented by Bacteriophage r1t, Orf17. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage and bacterial proteins of around 59 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this organism. The function of this family is unknown.
Probab=27.37 E-value=25 Score=21.35 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=22.9
Q ss_pred cCCCCCHHHHHHHHHHHHHHhhCCCCCCCCCCC
Q 043029 58 LGTYDTPEDAALAYDRAAFKIHGQKAKLNFPHL 90 (109)
Q Consensus 58 LG~f~t~eeAA~AYD~aa~~l~G~~a~~NFp~~ 90 (109)
+|+||+..||.+.-..|...+-.+.....|...
T Consensus 1 mgyyd~~nearrisklas~~isseq~~kefe~~ 33 (59)
T PF07384_consen 1 MGYYDKRNEARRISKLASQNISSEQNRKEFEIN 33 (59)
T ss_pred CCcccchhHHHHHHHHHhcccchhhhhhhhhhc
Confidence 589999999999887776665544444444443
No 24
>PRK10927 essential cell division protein FtsN; Provisional
Probab=26.09 E-value=1.2e+02 Score=24.82 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=24.0
Q ss_pred eEEEEeeCCCCCCcEEecCCCCCHHHHHHHHHHHHH
Q 043029 41 FAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAF 76 (109)
Q Consensus 41 w~A~I~~~~~~~Gk~~~LG~f~t~eeAA~AYD~aa~ 76 (109)
+.|+|...+ .=-+|.||-|.+.++|-++.++...
T Consensus 273 ~~A~I~~~g--~~~RVrVGPf~sr~eAe~a~~rLk~ 306 (319)
T PRK10927 273 FDSKITTNN--GWNRVVIGPVKGKENADSTLNRLKM 306 (319)
T ss_pred CeeEEccCC--cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 455554333 1258899999999999999876543
No 25
>PF12752 SUZ: SUZ domain; InterPro: IPR024771 The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched in positively charged amino acids. It was first characterised in the Caenorhabditis elegans protein SZY-20 where it has been shown to bind RNA and allow their localization to the centrosome [].
Probab=25.58 E-value=1.1e+02 Score=18.38 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHHHHHHHHhhCCC
Q 043029 60 TYDTPEDAALAYDRAAFKIHGQK 82 (109)
Q Consensus 60 ~f~t~eeAA~AYD~aa~~l~G~~ 82 (109)
.-.|.||=..+|.+|..++||..
T Consensus 36 ~~kSlEERE~eY~~AR~RIFg~~ 58 (59)
T PF12752_consen 36 PSKSLEEREAEYAEARARIFGSS 58 (59)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCC
Confidence 45789999999999999999864
No 26
>TIGR01164 rplP_bact ribosomal protein L16, bacterial/organelle. This model describes bacterial and organellar ribosomal protein L16. The homologous protein of the eukaryotic cytosol is designated L10
Probab=23.27 E-value=1.7e+02 Score=20.28 Aligned_cols=34 Identities=26% Similarity=0.212 Sum_probs=25.7
Q ss_pred ceEEEEeeCCCCCCcEEecCCCCCHHHHHHHHHHHHHHh
Q 043029 40 KFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKI 78 (109)
Q Consensus 40 kw~A~I~~~~~~~Gk~~~LG~f~t~eeAA~AYD~aa~~l 78 (109)
.|.|+|.... .-+.++. .+++.|..|...++.+|
T Consensus 91 ~~varV~~G~----ilfEi~~-~~~~~a~~al~~a~~KL 124 (126)
T TIGR01164 91 YWVAVVKPGK----ILFEIAG-VPEEVAREAFRLAASKL 124 (126)
T ss_pred EEEEEECCCC----EEEEEeC-CCHHHHHHHHHHHHhcC
Confidence 4999998643 3455666 89999999998887665
No 27
>PF11132 SplA: Transcriptional regulator protein (SplA); InterPro: IPR022608 The SplA protein functions in trans as a negative regulator of the level of splB-lacZ expression in the developing forespore [].
Probab=23.10 E-value=66 Score=20.83 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=12.5
Q ss_pred CCCCCHHHHHHHHHH
Q 043029 59 GTYDTPEDAALAYDR 73 (109)
Q Consensus 59 G~f~t~eeAA~AYD~ 73 (109)
-.|.|.+||.+||..
T Consensus 58 Avfss~~eAe~ay~~ 72 (75)
T PF11132_consen 58 AVFSSYEEAEQAYHE 72 (75)
T ss_pred hhhcCHHHHHHHHHH
Confidence 468899999999974
No 28
>PRK09203 rplP 50S ribosomal protein L16; Reviewed
Probab=22.88 E-value=1.6e+02 Score=20.83 Aligned_cols=35 Identities=23% Similarity=0.150 Sum_probs=26.5
Q ss_pred ceEEEEeeCCCCCCcEEecCCCCCHHHHHHHHHHHHHHhh
Q 043029 40 KFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIH 79 (109)
Q Consensus 40 kw~A~I~~~~~~~Gk~~~LG~f~t~eeAA~AYD~aa~~l~ 79 (109)
.|.|+|..+. --+.++. .+++.|..|...|+.+|-
T Consensus 92 ~~varVk~G~----iifEi~~-~~~~~a~~al~~a~~KLP 126 (138)
T PRK09203 92 YWVAVVKPGR----ILFEIAG-VSEELAREALRLAAAKLP 126 (138)
T ss_pred EEEEEECCCC----EEEEEeC-CCHHHHHHHHHHHhccCC
Confidence 4999998643 3455666 889999999998887664
No 29
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=22.60 E-value=2.1e+02 Score=18.01 Aligned_cols=46 Identities=24% Similarity=0.239 Sum_probs=32.8
Q ss_pred CCeeeeEECCC-CceEEEEeeCCCCCCcEEecCCCCCHHHHHHHHHHHHHHh
Q 043029 28 KSFRGVRKRPW-GKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKI 78 (109)
Q Consensus 28 s~yrGV~~~~~-gkw~A~I~~~~~~~Gk~~~LG~f~t~eeAA~AYD~aa~~l 78 (109)
.+|.||..+-. -+-...|.. .||-+-.|. .+++||..|.+.....|
T Consensus 36 e~fpgl~~r~~~p~~t~~IF~----sGki~itGa-ks~~~~~~a~~~i~~~L 82 (86)
T PF00352_consen 36 ERFPGLIYRLRNPKATVLIFS----SGKIVITGA-KSEEEAKKAIEKILPIL 82 (86)
T ss_dssp TTESSEEEEETTTTEEEEEET----TSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEeecCCcEEEEEEc----CCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 47888875533 456677766 667777775 68999999988776655
No 30
>PF05406 WGR: WGR domain; InterPro: IPR008893 This domain is named after the most conserved central motif of the domain. It is found in a variety of polyA polymerases as well as the Escherichia coli molybdate metabolism regulator P33345 from SWISSPROT and other proteins of unknown function.The domain is found in isolation in proteins such as Q9JN21 from SWISSPROT and is between 70 and 80 residues in length. ; PDB: 2EOC_A 2RA8_A 4DQY_C 2CR9_A.
Probab=21.77 E-value=1.1e+02 Score=18.98 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=19.9
Q ss_pred cCCCCCHHHHHHHHHHHHHHhh--CCCCCCCC
Q 043029 58 LGTYDTPEDAALAYDRAAFKIH--GQKAKLNF 87 (109)
Q Consensus 58 LG~f~t~eeAA~AYD~aa~~l~--G~~a~~NF 87 (109)
+=.|++++||..++++....-- |-.-..||
T Consensus 49 ~~~f~s~~eA~~~f~~~~~~K~~~gy~~~~~f 80 (81)
T PF05406_consen 49 IKPFDSEEEAIKEFEKLFKEKTGKGYEERDNF 80 (81)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHSSTSCCCGG-
T ss_pred EEeCCCHHHHHHHHHHHHHHHHcCCCcccccC
Confidence 3478999999999987655543 33344555
No 31
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=21.51 E-value=3.3e+02 Score=19.82 Aligned_cols=45 Identities=24% Similarity=0.209 Sum_probs=34.1
Q ss_pred CeeeeEECC-CCceEEEEeeCCCCCCcEEecCCCCCHHHHHHHHHHHHHHh
Q 043029 29 SFRGVRKRP-WGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKI 78 (109)
Q Consensus 29 ~yrGV~~~~-~gkw~A~I~~~~~~~Gk~~~LG~f~t~eeAA~AYD~aa~~l 78 (109)
+|-||..|- .-+-.+.|+. .||-+-.| ..++|+|..|.++.+..+
T Consensus 35 ~fpgli~R~~~Pk~t~lIF~----sGKiviTG-aks~~~~~~a~~~~~~~l 80 (174)
T cd04517 35 RYPKVTMRLREPRATASVWS----SGKITITG-ATSEEEAKQAARRAARLL 80 (174)
T ss_pred CCCEEEEEecCCcEEEEEEC----CCeEEEEc-cCCHHHHHHHHHHHHHHH
Confidence 899987553 3566788877 56776666 478999999998887776
No 32
>cd08001 WGR_PARP1_like WGR domain of poly(ADP-ribose) polymerase 1 and similar proteins. The WGR domain is found in a variety of eukaryotic poly(ADP-ribose) polymerases (PARPs). It has been called WGR after the most conserved central motif of the domain. The domain typically occurs together with a catalytic PARP domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain. PARPs catalyze the NAD(+)-dependent synthesis of ADP-ribose polymers and their addition to various nuclear proteins. Higher eukaryotes contain several PARPs and and there may be up to 17 human PARP-like proteins, with three of them (PARP-1, PARP-2, and PARP-3) containing a WGR domain. The synthesis of poly-ADP-ribose requires multiple enzymatic activities for initiation, trans-ADP-ribosylation, elongation, branching, and release of the polymer from the enzyme. This subfamily is composed of vertebrate PARP-1 and similar proteins, including Arabidopsis thaliana
Probab=21.29 E-value=2.5e+02 Score=18.37 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=27.0
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhhCCC--CCCCCCCC
Q 043029 55 RVWLGTYDTPEDAALAYDRAAFKIHGQK--AKLNFPHL 90 (109)
Q Consensus 55 ~~~LG~f~t~eeAA~AYD~aa~~l~G~~--a~~NFp~~ 90 (109)
+.-+-.|.++++|..++++.-...-|.. ...+|+.-
T Consensus 56 q~~~~~~~~~~~A~~~F~k~f~~KTgn~w~~r~~f~k~ 93 (104)
T cd08001 56 GNKLEEFSSLEEAKMAFEELYEEKTGNDFENRKNFKKK 93 (104)
T ss_pred ceEccCCCCHHHHHHHHHHHHHHHhCCCCccccCCccc
Confidence 4556789999999999998888776643 35677553
No 33
>PF14882 GHL12: Hypothetical glycosyl hydrolase 12
Probab=20.80 E-value=73 Score=18.97 Aligned_cols=12 Identities=42% Similarity=0.340 Sum_probs=9.7
Q ss_pred CCCCHHHHHHHH
Q 043029 60 TYDTPEDAALAY 71 (109)
Q Consensus 60 ~f~t~eeAA~AY 71 (109)
.|.|.+||..|-
T Consensus 39 ~Y~t~~eA~~Aa 50 (53)
T PF14882_consen 39 FYPTYEEASKAA 50 (53)
T ss_pred ccCCHHHHHHHH
Confidence 489999998773
No 34
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=20.55 E-value=1.7e+02 Score=20.32 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=20.1
Q ss_pred CCcEEecCCCCCHHHHHHHHHHHH
Q 043029 52 TGARVWLGTYDTPEDAALAYDRAA 75 (109)
Q Consensus 52 ~Gk~~~LG~f~t~eeAA~AYD~aa 75 (109)
.|+.+-||.|=+++|-..-++...
T Consensus 114 ~g~~veiG~fL~~~eR~~la~~L~ 137 (140)
T PF10003_consen 114 RGREVEIGRFLNPEEREELARELR 137 (140)
T ss_pred CCEEEEEccCCCHHHHHHHHHHHH
Confidence 679999999999999888776543
Done!