BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043030
         (470 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2K46|A Chain A, Xenopus Laevis Malectin Complexed With Nigerose
           (Glcalpha1- 3glc)
 pdb|2KR2|A Chain A, Xenopus Laevis Malectin Complexed With Maltose
           (Glcalpha1-4glc)
          Length = 190

 Score = 32.7 bits (73), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)

Query: 297 WEFPVIEGYKYLVRLHFCDIASISLGLLFFNVYVNGNLAYKDLDLSIVAGYSLASPFYAD 356
           ++ P+ E  +Y++ L F ++         F+V VNG+   KDLD+    G+S A   + +
Sbjct: 73  YDIPIKEEGEYVLVLKFAEVYFAQSQQKVFDVRVNGHTVVKDLDIFDRVGHSTA---HDE 129

Query: 357 FVVDSYHSGVLSVS 370
            +  S   G LSV 
Sbjct: 130 IIPISIKKGKLSVQ 143


>pdb|2JWP|A Chain A, Malectin
          Length = 174

 Score = 32.3 bits (72), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)

Query: 297 WEFPVIEGYKYLVRLHFCDIASISLGLLFFNVYVNGNLAYKDLDLSIVAGYSLASPFYAD 356
           ++ P+ E  +Y++ L F ++         F+V VNG+   KDLD+    G+S A   + +
Sbjct: 69  YDIPIKEEGEYVLVLKFAEVYFAQSQQKVFDVRVNGHTVVKDLDIFDRVGHSTA---HDE 125

Query: 357 FVVDSYHSGVLSVS 370
            +  S   G LSV 
Sbjct: 126 IIPISIKKGKLSVQ 139


>pdb|2V5Y|A Chain A, Crystal Structure Of The Receptor Protein Tyrosine
           Phosphatase Mu Ectodomain
          Length = 731

 Score = 28.5 bits (62), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 8/72 (11%)

Query: 99  KIRDKGTHMVRLHFYQLNSSQFVSDDAQFHV-LVNGYVVLSNFSVGNIIASASVKEYLIW 157
           ++++  TH +  H+       FVS  +     L+N YV ++N  +GN I + S      W
Sbjct: 68  QLKENDTHCIDFHY-------FVSSKSNSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTW 120

Query: 158 INAEKLVIAFLP 169
             AE  +  F P
Sbjct: 121 NRAELAISTFWP 132


>pdb|2C9A|A Chain A, Crystal Structure Of The Mam-ig Module Of Receptor Protein
           Tyrosine Phosphatase Mu
          Length = 259

 Score = 28.5 bits (62), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 99  KIRDKGTHMVRLHFYQLNSSQFVSDDAQFHVLVNGYVVLSNFSVGNIIASASVKEYLIWI 158
           ++++  TH +  H++  + S           L+N YV ++N  +GN I + S      W 
Sbjct: 68  QLKENDTHCIDFHYFVSSKSNSPPG------LLNVYVKVNNGPLGNPIWNISGDPTRTWN 121

Query: 159 NAEKLVIAFLP 169
            AE  +  F P
Sbjct: 122 RAELAISTFWP 132


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,339,913
Number of Sequences: 62578
Number of extensions: 541284
Number of successful extensions: 1089
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1087
Number of HSP's gapped (non-prelim): 6
length of query: 470
length of database: 14,973,337
effective HSP length: 102
effective length of query: 368
effective length of database: 8,590,381
effective search space: 3161260208
effective search space used: 3161260208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)