Query 043030
Match_columns 470
No_of_seqs 270 out of 1130
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 12:08:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043030.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043030hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 100.0 2.2E-62 4.7E-67 536.4 35.7 343 12-396 5-364 (623)
2 PF12819 Malectin_like: Carboh 100.0 5E-62 1.1E-66 498.8 32.8 324 35-394 1-347 (347)
3 PF11721 Malectin: Di-glucose 99.9 7.5E-24 1.6E-28 196.8 8.3 160 217-389 2-174 (174)
4 PF11721 Malectin: Di-glucose 99.9 1.2E-21 2.6E-26 182.1 9.5 138 32-169 2-152 (174)
5 PLN03150 hypothetical protein; 99.8 5.2E-19 1.1E-23 194.4 15.7 150 32-188 193-364 (623)
6 PF12819 Malectin_like: Carboh 99.6 2.9E-14 6.2E-19 146.5 13.1 152 31-186 179-347 (347)
7 KOG3593 Predicted receptor-lik 97.8 1.3E-05 2.7E-10 78.4 3.3 109 271-393 105-227 (355)
8 KOG3593 Predicted receptor-lik 97.1 0.00048 1E-08 67.6 3.8 110 31-144 60-170 (355)
9 PF12273 RCR: Chitin synthesis 74.1 1.5 3.3E-05 38.7 1.1 7 447-453 35-41 (130)
10 PF04478 Mid2: Mid2 like cell 68.2 4.8 0.0001 36.5 2.9 7 418-424 51-57 (154)
11 PF01102 Glycophorin_A: Glycop 60.8 1.2 2.6E-05 39.0 -2.3 8 419-426 67-74 (122)
12 PF15102 TMEM154: TMEM154 prot 52.1 13 0.00027 33.6 2.7 8 419-426 59-66 (146)
13 PF08374 Protocadherin: Protoc 47.1 8.9 0.00019 36.7 1.0 7 447-453 78-85 (221)
14 PF12877 DUF3827: Domain of un 41.9 14 0.0003 40.9 1.6 24 160-185 74-97 (684)
15 PF01034 Syndecan: Syndecan do 40.2 9.3 0.0002 29.5 -0.0 8 419-426 12-19 (64)
16 PF01299 Lamp: Lysosome-associ 37.4 13 0.00028 37.7 0.5 11 416-426 270-280 (306)
17 PHA03265 envelope glycoprotein 35.5 15 0.00033 37.7 0.6 10 417-426 348-357 (402)
18 PF15050 SCIMP: SCIMP protein 34.4 6.5 0.00014 34.1 -1.8 10 417-426 6-15 (133)
19 PF02480 Herpes_gE: Alphaherpe 28.5 1.2E+02 0.0026 32.6 6.0 27 309-335 269-295 (439)
20 PF07172 GRP: Glycine rich pro 27.8 40 0.00087 28.2 1.8 17 8-24 4-20 (95)
21 PF05393 Hum_adeno_E3A: Human 24.6 17 0.00037 29.8 -0.9 6 437-442 55-60 (94)
22 PTZ00382 Variant-specific surf 23.4 74 0.0016 26.6 2.7 7 420-426 70-76 (96)
23 PF02439 Adeno_E3_CR2: Adenovi 21.5 22 0.00047 24.6 -0.7 9 418-426 5-13 (38)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-62 Score=536.39 Aligned_cols=343 Identities=21% Similarity=0.260 Sum_probs=271.2
Q ss_pred HHHHHHHHhhhcccccCCCceEEEccCCCCccC--CCCCccccCccccccCceeecCCcceeeccCCCCCCchhccceee
Q 043030 12 LLLLSLSSFYGIALSFSPADDYLIDCGSTVDTT--VDNRLFISDSSRASSHLLTFSTRSKSIQLSHRNGKLPEIYNSARV 89 (470)
Q Consensus 12 ~~~~~~~~~~~~~~~~~p~~~~~InCG~~~~~~--~~gr~w~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lY~TaR~ 89 (470)
|+++.+++++..++...+++.|+||||++.+.+ .+||+|++|. .|. .+...... .++ ...++|+|+|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~I~CGs~~~~~~d~~~~~w~~D~------~~~-~~~~~~~~--~~~-~~~~~~~t~R~ 74 (623)
T PLN03150 5 LLAASALLAVLASLASPEPFTMRISCGARVNVRTAPTNTLWYKDF------AYT-GGIPANAT--RPS-FIAPPLKTLRY 74 (623)
T ss_pred HHHHHHHHHhhcccccCCCccEEEeCCCCCCcccCCCCCEEcCCc------ccc-cCcccccc--Ccc-cccchhhcccc
Confidence 455555555555555556789999999998763 5799999995 343 22222111 222 23568999999
Q ss_pred cCC----CCeEEEecCCCceEEEEEEEeeccCCCCCCCCceEEEEECC---EEEEEeeeccccccceEEEEEEEEeeCCe
Q 043030 90 FDR----PSRYIFKIRDKGTHMVRLHFYQLNSSQFVSDDAQFHVLVNG---YVVLSNFSVGNIIASASVKEYLIWINAEK 162 (470)
Q Consensus 90 f~~----~~~Y~f~v~~~G~y~VRLhF~~~~y~~~d~~~~~FdV~i~g---~~ll~~f~~~~~~~~~~~kEf~v~v~~~~ 162 (470)
|+. ++||+||+.++|+|+|||||++..|++++ ..+.|||++|+ .+++.+|+. ....++|||++.++++.
T Consensus 75 F~~~~g~~~cY~~~~~~~g~ylVRl~F~~~~y~~~~-~~~~Fdv~~~~~~~~tv~~~~~~---~~~~v~~E~i~~~~~~~ 150 (623)
T PLN03150 75 FPLSDGPENCYNINRVPKGHYSVRVFFGLVAEPNFD-SEPLFDVSVEGTQISSLKSGWSS---HDEQVFAEALVFLTDGS 150 (623)
T ss_pred CCcccccccceEeeecCCCcEEEEEEeecCCcCCCC-CCCceEEEECcEEEEEEecCccc---CCCcEEEEEEEEecCCc
Confidence 995 68999998778999999999877766665 56899999999 667777763 24579999999999999
Q ss_pred EEEEEEeCCCCCceEEEEeeecccCCcccccccccccCCCCCcccccchhhheeeEEEecCCCC----ccCCCCCC--CC
Q 043030 163 LVIAFLPTMKSKFAFVNAIEVISAPKDLILDTAKFVNGDKIDNFDALSKQALEVMYRVNVGGPK----VTPFNDTV--WR 236 (470)
Q Consensus 163 L~I~f~p~~~~~~aFINaIEI~~~p~~l~~~~~~~v~~~~~~~~~~~~~~al~t~~RiNvGg~~----i~~~~Dt~--~R 236 (470)
|.|||+| .+.++||||||||+++|+++|... +. +..+.+|+++||+||||+. +++++|.+ ||
T Consensus 151 l~vcf~~-~~~~~pFIs~iEv~~l~~~~y~~~-----~~------~~~~~~L~~~~R~n~G~~~~~~~~d~~~D~~~~dR 218 (623)
T PLN03150 151 ASICFHS-TGHGDPAILSIEILQVDDKAYNFG-----PS------WGQGVILRTAKRLSCGAGKSKFDEDYSGDHWGGDR 218 (623)
T ss_pred EEEEEec-CCCCCCceeEEEEEEcCccccccc-----cc------ccCceEEEEEEEEEecCcccccccCCCCCcccCcc
Confidence 9999999 567999999999999999998421 10 0135679999999999974 57788886 99
Q ss_pred CCCCCCccccccCcceeeecceeeeecCCCCCCCCCcHHHHHhhhccccCCCCCCCcceEEEeeccCCCeEEEEEEeeec
Q 043030 237 TWLPDDEFLKSMRDQKRVYSTGRIWYQSGGASREIGPDNVYNTARVIAATNASIPNLNMTWEFPVIEGYKYLVRLHFCDI 316 (470)
Q Consensus 237 ~W~~D~~y~~~~~~~~~~~~~~~i~~~~~~~~~~~aP~~VY~TAr~~~~~~~~~~~~nltw~f~V~~g~~Y~VrLHF~Ei 316 (470)
+|.+|++|+.+. +..+++...|+++ ..+++.+|+.||||||++..+ ..+++|.|+|++++.|+|||||||+
T Consensus 219 ~W~~d~~~~~~~--~~~~st~~~I~~~--~~~~~~~P~~VyqTA~~~~~~-----~~~lty~~~v~~~~~Y~VrLhFaEi 289 (623)
T PLN03150 219 FWNRMQTFGSGS--DQAISTENVIKKA--SNAPNFYPESLYQSALVSTDT-----QPDLSYTMDVDPNRNYSVWLHFAEI 289 (623)
T ss_pred ccCcCcccCCCc--ccccccccccccc--cCCCccChHHHhhhhccccCC-----CCceEEEeecCCCCCEEEEEEEEec
Confidence 999999887443 2344556667765 246889999999999998642 2579999999999999999999999
Q ss_pred cc--CCCCeEEEEEEECCEEeccCcchhhhcccCCCcceEEEEEEEecCCceEEEEEEecCCCCCCCccceeeEEEEEee
Q 043030 317 AS--ISLGLLFFNVYVNGNLAYKDLDLSIVAGYSLASPFYADFVVDSYHSGVLSVSVGPSDKSLGYAVDGILNAVEIMKM 394 (470)
Q Consensus 317 ~~--~~~~~R~F~VyIng~~~~~~~Di~~~~~~~~~~p~~~d~vv~~~~~g~L~Is~~p~~~s~~~~~~aiLNgiEI~k~ 394 (470)
+. ...++|+|||||||+.+++++||..+++ +...|++++|.+.+. ++.|+|+|+|... . +||||||||||+
T Consensus 290 ~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g-~~~~~~~~~~~v~~~-~g~l~isl~p~~~---s--~pilNaiEI~~~ 362 (623)
T PLN03150 290 DNSITAEGKRVFDVLINGDTAFKDVDIVKMSG-ERYTALVLNKTVAVS-GRTLTIVLQPKKG---T--HAIINAIEVFEI 362 (623)
T ss_pred cCccCCCceEEEEEEECCEEeecccChhhhcC-CcccceEEEeEEeec-CCeEEEEEeeCCC---C--cceeeeeeeeec
Confidence 73 3568999999999999999999998876 566899999999874 4789999999763 2 799999999999
Q ss_pred ec
Q 043030 395 NK 396 (470)
Q Consensus 395 ~~ 396 (470)
..
T Consensus 363 ~~ 364 (623)
T PLN03150 363 IT 364 (623)
T ss_pred cc
Confidence 65
No 2
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=100.00 E-value=5e-62 Score=498.75 Aligned_cols=324 Identities=34% Similarity=0.560 Sum_probs=245.3
Q ss_pred EccCCCCccC--C---CCCccccCccccccCceeecCCcceeecc-C-CCCCCchhccceeecC--CCCeEEEecCCC--
Q 043030 35 IDCGSTVDTT--V---DNRLFISDSSRASSHLLTFSTRSKSIQLS-H-RNGKLPEIYNSARVFD--RPSRYIFKIRDK-- 103 (470)
Q Consensus 35 InCG~~~~~~--~---~gr~w~~D~~~~~~~~~~~~g~~~~~~~~-~-~~~~~~~lY~TaR~f~--~~~~Y~f~v~~~-- 103 (470)
||||++.+.+ . .||+|++|. .|+.+|....++.+ + ......++|+|||+|+ .++||+|++.++
T Consensus 1 IdCG~~~~~s~y~D~~tg~~~~~D~------~~~~~g~~~~i~~~~~~~~~~~~~~y~taR~F~~g~r~cY~l~~~~~~~ 74 (347)
T PF12819_consen 1 IDCGSSSNSSSYVDDSTGRTWVSDD------DFIDTGKSGNISSQPDSSSSDSSPPYQTARIFPEGSRNCYTLPVTPPGG 74 (347)
T ss_pred CcCCCCCCCcccccCCCCcEEeCCC------CcccCCCccccccccCCcCCccccccceEEEcCCCCccEEEeeccCCCC
Confidence 7999996643 2 399999997 68877775555322 1 1223467999999999 679999998633
Q ss_pred ceEEEEEEEeeccCCCCCC-------CCceEEEEECCEEEEEeeeccccccceEEEEEEEEee-CCeEEEEEEeCCCCCc
Q 043030 104 GTHMVRLHFYQLNSSQFVS-------DDAQFHVLVNGYVVLSNFSVGNIIASASVKEYLIWIN-AEKLVIAFLPTMKSKF 175 (470)
Q Consensus 104 G~y~VRLhF~~~~y~~~d~-------~~~~FdV~i~g~~ll~~f~~~~~~~~~~~kEf~v~v~-~~~L~I~f~p~~~~~~ 175 (470)
++|+|||||+ |++||. ....|++++|..... ..++......+++|||+++++ ++.|.|||+|+..+.+
T Consensus 75 ~~yliRl~F~---~gnyd~~~fs~~~~~~~FdL~~~~n~~~-tV~~~~~~~~~~~~E~ii~v~~~~~l~vclv~~~~g~~ 150 (347)
T PF12819_consen 75 GKYLIRLHFY---YGNYDGLNFSVSSSPPTFDLLLGFNFWS-TVNLSNSPSSPVVKEFIINVTWSDTLSVCLVPTGSGTF 150 (347)
T ss_pred ceEEEEEEec---cccccccccccccCCcceEEEECCceeE-EEEecCCCcceEEEEEEEEEcCCCcEEEEEEeCCCCCC
Confidence 3999999997 455542 135688888874321 111111123679999999998 7999999999433556
Q ss_pred eEEEEeeecccCCcccccccccccCCCCCcccccchhhheeeEEEecCCCC--ccCCCCCCCCCCCCCCccccccCccee
Q 043030 176 AFVNAIEVISAPKDLILDTAKFVNGDKIDNFDALSKQALEVMYRVNVGGPK--VTPFNDTVWRTWLPDDEFLKSMRDQKR 253 (470)
Q Consensus 176 aFINaIEI~~~p~~l~~~~~~~v~~~~~~~~~~~~~~al~t~~RiNvGg~~--i~~~~Dt~~R~W~~D~~y~~~~~~~~~ 253 (470)
||||||||++||+++|++. ....+.+|++++|+||||.. +++++|++||+|.+ |.. ...+..
T Consensus 151 pFIsaiEl~~lp~~ly~~~------------~~~~s~~L~~~~R~n~G~~~~~iryp~D~~dR~W~~---~~~-~~~~~~ 214 (347)
T PF12819_consen 151 PFISAIELRPLPDSLYPDT------------DANSSQALETVYRLNVGGSSSFIRYPDDTYDRIWQP---YSS-SPGWSN 214 (347)
T ss_pred CceeEEEEEECCccceecc------------ccCCCceeEEEEeecCCCcccccCCCCCcceeeccc---ccc-Cccccc
Confidence 9999999999999999531 12367899999999999998 99999999999995 311 122334
Q ss_pred eecceeeeecCCCCCCCCCcHHHHHhhhccccCCCCCCCcceEEEeeccCCCeEEEEEEeeeccc--CCCCeEEEEEEEC
Q 043030 254 VYSTGRIWYQSGGASREIGPDNVYNTARVIAATNASIPNLNMTWEFPVIEGYKYLVRLHFCDIAS--ISLGLLFFNVYVN 331 (470)
Q Consensus 254 ~~~~~~i~~~~~~~~~~~aP~~VY~TAr~~~~~~~~~~~~nltw~f~V~~g~~Y~VrLHF~Ei~~--~~~~~R~F~VyIn 331 (470)
.++...|+. ....+++.||..||+|||+|.+.+ .++|++|.| ++++..|+||||||||+. ...++|+|+||||
T Consensus 215 ist~~~i~~-~~~~~~~~~P~~V~~TA~~~~~~s---~~~nltw~~-~~~~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN 289 (347)
T PF12819_consen 215 ISTTSNINI-NSSNNPYDAPSAVYQTARTPSNSS---DPLNLTWSF-VDPGFSYYVRLHFAEIQSLSPNNNQREFDIYIN 289 (347)
T ss_pred cccceeeec-ccCCccCcChHHHHHhhhcccccc---cceEEEecc-CCCCccEEEEEEEeecccccCCCCeEEEEEEEC
Confidence 444444541 224578999999999999998644 238999999 999999999999999996 3456899999999
Q ss_pred CEEeccCcchhhhcccCCCcceEEEEEEEecCCceEEEEEEecCCCCCCCccceeeEEEEEee
Q 043030 332 GNLAYKDLDLSIVAGYSLASPFYADFVVDSYHSGVLSVSVGPSDKSLGYAVDGILNAVEIMKM 394 (470)
Q Consensus 332 g~~~~~~~Di~~~~~~~~~~p~~~d~vv~~~~~g~L~Is~~p~~~s~~~~~~aiLNgiEI~k~ 394 (470)
|+.+.+ |+.....++...|+|+||++.+.+++.++|+|+|+..+ .+ +|||||+|||||
T Consensus 290 ~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~~~~~~~isL~~t~~S-~l--ppiLNalEIy~v 347 (347)
T PF12819_consen 290 GQTAYS--DVSPPYLGADTVPYYSDYVVNVPDSGFLNISLGPTPDS-TL--PPILNALEIYKV 347 (347)
T ss_pred CeEccC--ccCcccccCcceEeecceEEEecCCCEEEEEEEeCCCC-Cc--CceeEeeeeEeC
Confidence 999987 55542211456789999999986667899999999876 34 999999999996
No 3
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.89 E-value=7.5e-24 Score=196.84 Aligned_cols=160 Identities=24% Similarity=0.377 Sum_probs=98.0
Q ss_pred eEEEecCCCCccCCCCCCCCCCCCCCccccccCcceeeecceeeeecCCCCCCCCCcHHHHHhhhccccCCCCCCCcceE
Q 043030 217 MYRVNVGGPKVTPFNDTVWRTWLPDDEFLKSMRDQKRVYSTGRIWYQSGGASREIGPDNVYNTARVIAATNASIPNLNMT 296 (470)
Q Consensus 217 ~~RiNvGg~~i~~~~Dt~~R~W~~D~~y~~~~~~~~~~~~~~~i~~~~~~~~~~~aP~~VY~TAr~~~~~~~~~~~~nlt 296 (470)
++||||||+.+ .|..++.|.+|+.|..+.......................+.++.+|||+|. +. -+++
T Consensus 2 ~~~IN~Gg~~~---~~~~g~~w~~D~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~-g~-------~~f~ 70 (174)
T PF11721_consen 2 VLRINAGGPAY---TDSSGIVWEADQYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERY-GP-------SSFS 70 (174)
T ss_dssp EEEEEETSSSE---EETTTEEE-SSSSSTTSS-----------SSTTS--TTS-HHHHHTTT------S-------SSEE
T ss_pred EEEEECCCCcc---cCCCCCEEcCCCCCCCCCcccccccccccccccccccccCCCchhhhHhhcC-CC-------CceE
Confidence 69999999987 4567999999998876654100000000000011122356778899999998 32 1599
Q ss_pred EEeeccCCCeEEEEEEeeecccCC------CCeEEEEEEECCEEeccCcchhhhcccCCCcceEEEE-EEEecCCceEEE
Q 043030 297 WEFPVIEGYKYLVRLHFCDIASIS------LGLLFFNVYVNGNLAYKDLDLSIVAGYSLASPFYADF-VVDSYHSGVLSV 369 (470)
Q Consensus 297 w~f~V~~g~~Y~VrLHF~Ei~~~~------~~~R~F~VyIng~~~~~~~Di~~~~~~~~~~p~~~d~-vv~~~~~g~L~I 369 (470)
|.+|+.+++.|.|+|||||+.... +|+|+|||+|||++++++|||.+++| +...|+++.| .+.+ .+|.|.|
T Consensus 71 Y~ip~~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G-~~~~~~~~~~~~v~v-~dg~L~i 148 (174)
T PF11721_consen 71 YDIPVVPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAG-GFNKAAVRRFFNVTV-TDGTLNI 148 (174)
T ss_dssp EEEE--S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHS-SSS---EEEEEEEEE-ETTEEET
T ss_pred EEEecCCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcC-CCceEEEEEEEEEEE-eCCcEEE
Confidence 999966778999999999999777 99999999999999999999999998 5555777777 6666 5678999
Q ss_pred EEEecCCCC------CCCccceeeEE
Q 043030 370 SVGPSDKSL------GYAVDGILNAV 389 (470)
Q Consensus 370 s~~p~~~s~------~~~~~aiLNgi 389 (470)
+|.+....+ +..-+|+||||
T Consensus 149 ~f~~~~~~~~~i~~~~~~~~p~IsaI 174 (174)
T PF11721_consen 149 QFVWAGKGTLCIPFIGSYGNPLISAI 174 (174)
T ss_dssp TEEEE--SEEEEEEESSSSSSSEEEE
T ss_pred EEEecCCCcEEeeccccCCCcEEeeC
Confidence 998421100 00105888887
No 4
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.85 E-value=1.2e-21 Score=182.09 Aligned_cols=138 Identities=23% Similarity=0.250 Sum_probs=86.0
Q ss_pred eEEEccCCCCccCCCCCccccCcccccc-CceeecCC----cceeeccCCCCCCchhccceeecCCCCeEEEecCCCceE
Q 043030 32 DYLIDCGSTVDTTVDNRLFISDSSRASS-HLLTFSTR----SKSIQLSHRNGKLPEIYNSARVFDRPSRYIFKIRDKGTH 106 (470)
Q Consensus 32 ~~~InCG~~~~~~~~gr~w~~D~~~~~~-~~~~~~g~----~~~~~~~~~~~~~~~lY~TaR~f~~~~~Y~f~v~~~G~y 106 (470)
.++||||++...+.+|+.|.+|....++ +.|..... .........++.++++|||+|+-+..++|.+|+.++|.|
T Consensus 2 ~~~IN~Gg~~~~~~~g~~w~~D~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~~f~Y~ip~~~~G~Y 81 (174)
T PF11721_consen 2 VLRINAGGPAYTDSSGIVWEADQYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPSSFSYDIPVVPNGTY 81 (174)
T ss_dssp EEEEEETSSSEEETTTEEE-SSSSSTTSS-----------SSTTS--TTS-HHHHHTTT-----SSSEEEEEE--S-EEE
T ss_pred EEEEECCCCcccCCCCCEEcCCCCCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCCceEEEEecCCCcEE
Confidence 4899999998766679999999854322 12221100 000111112334467999999966688999995569999
Q ss_pred EEEEEEeeccCCC----CCCCCceEEEEECCEEEEEeeecccc---ccceEEEEE-EEEeeCCeEEEEEEe
Q 043030 107 MVRLHFYQLNSSQ----FVSDDAQFHVLVNGYVVLSNFSVGNI---IASASVKEY-LIWINAEKLVIAFLP 169 (470)
Q Consensus 107 ~VRLhF~~~~y~~----~d~~~~~FdV~i~g~~ll~~f~~~~~---~~~~~~kEf-~v~v~~~~L~I~f~p 169 (470)
.|||||+|+.++. ...++|+|||++||.+++++||+... ...+++++| .+.++++.|.|+|.+
T Consensus 82 ~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i~f~~ 152 (174)
T PF11721_consen 82 TVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNIQFVW 152 (174)
T ss_dssp EEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEETTEEE
T ss_pred EEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEEEEEe
Confidence 9999999998765 34678999999999999999999863 234788888 678899999999994
No 5
>PLN03150 hypothetical protein; Provisional
Probab=99.80 E-value=5.2e-19 Score=194.42 Aligned_cols=150 Identities=22% Similarity=0.290 Sum_probs=113.4
Q ss_pred eEEEccCCCCcc---CC--C----CCccccCccccccCceeecC-----Ccceeec--cCCCCCCchhccceeecCC---
Q 043030 32 DYLIDCGSTVDT---TV--D----NRLFISDSSRASSHLLTFST-----RSKSIQL--SHRNGKLPEIYNSARVFDR--- 92 (470)
Q Consensus 32 ~~~InCG~~~~~---~~--~----gr~w~~D~~~~~~~~~~~~g-----~~~~~~~--~~~~~~~~~lY~TaR~f~~--- 92 (470)
.+|||||+.... +. | +|.|.+|. .|.... ....+.. ..+...|..+|+|||.+..
T Consensus 193 ~~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~------~~~~~~~~~~st~~~I~~~~~~~~~~P~~VyqTA~~~~~~~~ 266 (623)
T PLN03150 193 AKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQ------TFGSGSDQAISTENVIKKASNAPNFYPESLYQSALVSTDTQP 266 (623)
T ss_pred EEEEEecCcccccccCCCCCcccCccccCcCc------ccCCCcccccccccccccccCCCccChHHHhhhhccccCCCC
Confidence 579999987432 11 1 69999996 333211 0111221 1233346679999999875
Q ss_pred CCeEEEecCCCceEEEEEEEeeccCCCCCCCCceEEEEECCEEEEEeeeccc---cccceEEEEEEEEeeCCeEEEEEEe
Q 043030 93 PSRYIFKIRDKGTHMVRLHFYQLNSSQFVSDDAQFHVLVNGYVVLSNFSVGN---IIASASVKEYLIWINAEKLVIAFLP 169 (470)
Q Consensus 93 ~~~Y~f~v~~~G~y~VRLhF~~~~y~~~d~~~~~FdV~i~g~~ll~~f~~~~---~~~~~~~kEf~v~v~~~~L~I~f~p 169 (470)
+.+|.|+++++|.|+|||||||+..+....+.|+|+|+|||..++++|++.. ....+++++|.+.++++.|+|+|+|
T Consensus 267 ~lty~~~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~~~~~~~~~v~~~~g~l~isl~p 346 (623)
T PLN03150 267 DLSYTMDVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSGERYTALVLNKTVAVSGRTLTIVLQP 346 (623)
T ss_pred ceEEEeecCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcCCcccceEEEeEEeecCCeEEEEEee
Confidence 5799999986789999999999975444557899999999999999999853 2357899999998888899999999
Q ss_pred CCCCCceEEEEeeecccCC
Q 043030 170 TMKSKFAFVNAIEVISAPK 188 (470)
Q Consensus 170 ~~~~~~aFINaIEI~~~p~ 188 (470)
..++.||||||||+++-.
T Consensus 347 -~~~s~pilNaiEI~~~~~ 364 (623)
T PLN03150 347 -KKGTHAIINAIEVFEIIT 364 (623)
T ss_pred -CCCCcceeeeeeeeeccc
Confidence 556679999999999875
No 6
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=99.55 E-value=2.9e-14 Score=146.48 Aligned_cols=152 Identities=21% Similarity=0.301 Sum_probs=102.6
Q ss_pred ceEEEccCCCC--cc-CCC--CCccccCccccccCceeecCCcceee-ccCCCCCCchhccceeecCCC-----CeEEEe
Q 043030 31 DDYLIDCGSTV--DT-TVD--NRLFISDSSRASSHLLTFSTRSKSIQ-LSHRNGKLPEIYNSARVFDRP-----SRYIFK 99 (470)
Q Consensus 31 ~~~~InCG~~~--~~-~~~--gr~w~~D~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~lY~TaR~f~~~-----~~Y~f~ 99 (470)
..+|+|||++. .. ..| +|.|.+..... .|.-+.+....... ..+...+|..+|+|||..... .+|.|
T Consensus 179 ~~~R~n~G~~~~~iryp~D~~dR~W~~~~~~~-~~~~ist~~~i~~~~~~~~~~~P~~V~~TA~~~~~~s~~~nltw~~- 256 (347)
T PF12819_consen 179 TVYRLNVGGSSSFIRYPDDTYDRIWQPYSSSP-GWSNISTTSNININSSNNPYDAPSAVYQTARTPSNSSDPLNLTWSF- 256 (347)
T ss_pred EEEeecCCCcccccCCCCCcceeeccccccCc-cccccccceeeecccCCccCcChHHHHHhhhcccccccceEEEecc-
Confidence 46899999986 33 233 89999642110 11112221111101 122344667899999997642 46777
Q ss_pred cCCCc-eEEEEEEEeeccCCCCCCCCceEEEEECCEEEEEeeeccc--cccceEEEEEEEEeeC-CeEEEEEEeCCCCC-
Q 043030 100 IRDKG-THMVRLHFYQLNSSQFVSDDAQFHVLVNGYVVLSNFSVGN--IIASASVKEYLIWINA-EKLVIAFLPTMKSK- 174 (470)
Q Consensus 100 v~~~G-~y~VRLhF~~~~y~~~d~~~~~FdV~i~g~~ll~~f~~~~--~~~~~~~kEf~v~v~~-~~L~I~f~p~~~~~- 174 (470)
++ ++ .|+|||||||+....-....|.|+|++||..+.++++... ....+++++|.+.+++ +.+.|++.|+ ..+
T Consensus 257 ~~-~~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~isL~~t-~~S~ 334 (347)
T PF12819_consen 257 VD-PGFSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYSDVSPPYLGADTVPYYSDYVVNVPDSGFLNISLGPT-PDST 334 (347)
T ss_pred CC-CCccEEEEEEEeecccccCCCCeEEEEEEECCeEccCccCcccccCcceEeecceEEEecCCCEEEEEEEeC-CCCC
Confidence 65 56 8999999999976433345799999999998776666522 2345678899888864 5799999994 444
Q ss_pred -ceEEEEeeeccc
Q 043030 175 -FAFVNAIEVISA 186 (470)
Q Consensus 175 -~aFINaIEI~~~ 186 (470)
-|+|||+||++|
T Consensus 335 lppiLNalEIy~v 347 (347)
T PF12819_consen 335 LPPILNALEIYKV 347 (347)
T ss_pred cCceeEeeeeEeC
Confidence 499999999975
No 7
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=97.81 E-value=1.3e-05 Score=78.44 Aligned_cols=109 Identities=18% Similarity=0.175 Sum_probs=80.1
Q ss_pred CCcHHHHHhhhccccCCCCCCCcceEEEeeccCCCeEEEEEEeeecccCCCCeEEEEEEEC-CEEeccCcchhhhcccCC
Q 043030 271 IGPDNVYNTARVIAATNASIPNLNMTWEFPVIEGYKYLVRLHFCDIASISLGLLFFNVYVN-GNLAYKDLDLSIVAGYSL 349 (470)
Q Consensus 271 ~aP~~VY~TAr~~~~~~~~~~~~nltw~f~V~~g~~Y~VrLHF~Ei~~~~~~~R~F~VyIn-g~~~~~~~Di~~~~~~~~ 349 (470)
.....+|||+|.-.. .+.|..|.+..++|-+.|-|||.+.+..++.+|||-+| +..+.+++||+...| +.
T Consensus 105 eed~ily~ter~nee--------tFgyd~pik~dgdyalvlkfaevyF~~~q~kvfdvrln~sh~vVk~ldi~~~vg-~r 175 (355)
T KOG3593|consen 105 EEDIILYQTERYNEE--------TFGYDVPIKEDGDYALVLKFAEVYFKTCQHKVFDVRLNCSHCVVKALDIFDQVG-DR 175 (355)
T ss_pred hhhhhhhhhcccchh--------hhcccccccCCCceehhhhHHHHHHHhhhhhheeeeeccceeEEeccchhhhcC-CC
Confidence 344678999998322 25677788777899999999999988888999999999 999999999999887 33
Q ss_pred Ccc--eEEEEEEE---------e--cCCceEEEEEEecCCCCCCCccceeeEEEEEe
Q 043030 350 ASP--FYADFVVD---------S--YHSGVLSVSVGPSDKSLGYAVDGILNAVEIMK 393 (470)
Q Consensus 350 ~~p--~~~d~vv~---------~--~~~g~L~Is~~p~~~s~~~~~~aiLNgiEI~k 393 (470)
+.+ .+.-+.+. + ...|.|+|+|-+.... +|++||.-|++
T Consensus 176 g~AhDe~i~~~i~~gkls~~gess~~t~gkl~le~~kg~ld-----npk~~a~aIl~ 227 (355)
T KOG3593|consen 176 GKAHDEIIPCLIGQGKLSVCGESSISTLGKLNLEFLKGVLD-----NPKDCARAILV 227 (355)
T ss_pred cccccceEEEEEcCceEEEEeeeEEeecceEEEEeecccCC-----ChhhhhHHHhh
Confidence 333 22222211 1 1346788888766532 78899988775
No 8
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=97.06 E-value=0.00048 Score=67.60 Aligned_cols=110 Identities=15% Similarity=0.156 Sum_probs=75.1
Q ss_pred ceEEEccCCCCccCCCCCccccCccccccCceeecCCcceeeccCCCCCCchhccceeecCCCCeEEEecCCCceEEEEE
Q 043030 31 DDYLIDCGSTVDTTVDNRLFISDSSRASSHLLTFSTRSKSIQLSHRNGKLPEIYNSARVFDRPSRYIFKIRDKGTHMVRL 110 (470)
Q Consensus 31 ~~~~InCG~~~~~~~~gr~w~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lY~TaR~f~~~~~Y~f~v~~~G~y~VRL 110 (470)
-.+.||||+..-.+..|..|..|..-..+ .-..-|....+.-. ....+..+|+|+|+-...+.|..|++..|.|-+-|
T Consensus 60 vI~aVncGgdaavd~ygI~f~aD~~~~VG-rasd~G~~l~i~~r-aeeed~ily~ter~neetFgyd~pik~dgdyalvl 137 (355)
T KOG3593|consen 60 VIPAVNCGGDAAVDNYGIRFAADPLEGVG-RASDYGMVLGIGCR-AEEEDIILYQTERYNEETFGYDVPIKEDGDYALVL 137 (355)
T ss_pred hhheeccCChhhhcccceEeecccccccc-ccCCccceeecccc-CChhhhhhhhhcccchhhhcccccccCCCceehhh
Confidence 35779999998777779999999522100 00001111111100 11123469999999766788999998779999999
Q ss_pred EEeeccCCCCCCCCceEEEEEC-CEEEEEeeeccc
Q 043030 111 HFYQLNSSQFVSDDAQFHVLVN-GYVVLSNFSVGN 144 (470)
Q Consensus 111 hF~~~~y~~~d~~~~~FdV~i~-g~~ll~~f~~~~ 144 (470)
-|++..+.. ....+|||.+| +..++++.++..
T Consensus 138 kfaevyF~~--~q~kvfdvrln~sh~vVk~ldi~~ 170 (355)
T KOG3593|consen 138 KFAEVYFKT--CQHKVFDVRLNCSHCVVKALDIFD 170 (355)
T ss_pred hHHHHHHHh--hhhhheeeeeccceeEEeccchhh
Confidence 999986543 45579999999 788888888764
No 9
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=74.09 E-value=1.5 Score=38.66 Aligned_cols=7 Identities=14% Similarity=0.515 Sum_probs=4.9
Q ss_pred CCCCeee
Q 043030 447 NSVAWSK 453 (470)
Q Consensus 447 ~~~~w~p 453 (470)
..+.|+.
T Consensus 35 ~gt~w~~ 41 (130)
T PF12273_consen 35 YGTRWMA 41 (130)
T ss_pred CCceecC
Confidence 5578875
No 10
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=68.19 E-value=4.8 Score=36.51 Aligned_cols=7 Identities=29% Similarity=0.676 Sum_probs=4.3
Q ss_pred ceeEEeH
Q 043030 418 NVGILVP 424 (470)
Q Consensus 418 ~~~~i~g 424 (470)
-++++||
T Consensus 51 VIGvVVG 57 (154)
T PF04478_consen 51 VIGVVVG 57 (154)
T ss_pred EEEEEec
Confidence 4566666
No 11
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=60.80 E-value=1.2 Score=39.03 Aligned_cols=8 Identities=25% Similarity=0.804 Sum_probs=3.9
Q ss_pred eeEEeHHH
Q 043030 419 VGILVPLI 426 (470)
Q Consensus 419 ~~~i~g~~ 426 (470)
.+||+|.+
T Consensus 67 ~~Ii~gv~ 74 (122)
T PF01102_consen 67 IGIIFGVM 74 (122)
T ss_dssp HHHHHHHH
T ss_pred eehhHHHH
Confidence 44455544
No 12
>PF15102 TMEM154: TMEM154 protein family
Probab=52.13 E-value=13 Score=33.62 Aligned_cols=8 Identities=50% Similarity=1.003 Sum_probs=3.6
Q ss_pred eeEEeHHH
Q 043030 419 VGILVPLI 426 (470)
Q Consensus 419 ~~~i~g~~ 426 (470)
+-|+|.++
T Consensus 59 LmIlIP~V 66 (146)
T PF15102_consen 59 LMILIPLV 66 (146)
T ss_pred EEEeHHHH
Confidence 33444545
No 13
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=47.12 E-value=8.9 Score=36.72 Aligned_cols=7 Identities=14% Similarity=0.757 Sum_probs=4.7
Q ss_pred CCCCe-ee
Q 043030 447 NSVAW-SK 453 (470)
Q Consensus 447 ~~~~w-~p 453 (470)
+++.| .|
T Consensus 78 e~~e~~tP 85 (221)
T PF08374_consen 78 ENSEWVTP 85 (221)
T ss_pred ccccccCC
Confidence 57788 45
No 14
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=41.86 E-value=14 Score=40.89 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=17.8
Q ss_pred CCeEEEEEEeCCCCCceEEEEeeecc
Q 043030 160 AEKLVIAFLPTMKSKFAFVNAIEVIS 185 (470)
Q Consensus 160 ~~~L~I~f~p~~~~~~aFINaIEI~~ 185 (470)
.+.++|.|+= .++..|+||=|+-.
T Consensus 74 ~~~V~i~~aV--r~~~~~LnGt~~S~ 97 (684)
T PF12877_consen 74 SGPVSITYAV--RNGSGFLNGTEVSE 97 (684)
T ss_pred CCCeEEEEEE--ecCceeeccHHHHH
Confidence 3457888874 47889999988754
No 15
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=40.19 E-value=9.3 Score=29.53 Aligned_cols=8 Identities=0% Similarity=0.156 Sum_probs=0.0
Q ss_pred eeEEeHHH
Q 043030 419 VGILVPLI 426 (470)
Q Consensus 419 ~~~i~g~~ 426 (470)
.++|+|.+
T Consensus 12 aavIaG~V 19 (64)
T PF01034_consen 12 AAVIAGGV 19 (64)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 44566655
No 16
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=37.45 E-value=13 Score=37.66 Aligned_cols=11 Identities=27% Similarity=0.042 Sum_probs=8.5
Q ss_pred CcceeEEeHHH
Q 043030 416 RGNVGILVPLI 426 (470)
Q Consensus 416 ~~~~~~i~g~~ 426 (470)
..-++|+||++
T Consensus 270 ~~~vPIaVG~~ 280 (306)
T PF01299_consen 270 SDLVPIAVGAA 280 (306)
T ss_pred cchHHHHHHHH
Confidence 45688889977
No 17
>PHA03265 envelope glycoprotein D; Provisional
Probab=35.52 E-value=15 Score=37.67 Aligned_cols=10 Identities=50% Similarity=0.302 Sum_probs=5.8
Q ss_pred cceeEEeHHH
Q 043030 417 GNVGILVPLI 426 (470)
Q Consensus 417 ~~~~~i~g~~ 426 (470)
..+++++|+.
T Consensus 348 ~~~g~~ig~~ 357 (402)
T PHA03265 348 TFVGISVGLG 357 (402)
T ss_pred cccceEEccc
Confidence 3566677643
No 18
>PF15050 SCIMP: SCIMP protein
Probab=34.38 E-value=6.5 Score=34.09 Aligned_cols=10 Identities=20% Similarity=0.331 Sum_probs=5.8
Q ss_pred cceeEEeHHH
Q 043030 417 GNVGILVPLI 426 (470)
Q Consensus 417 ~~~~~i~g~~ 426 (470)
++.|+|++.+
T Consensus 6 ~nFWiiLAVa 15 (133)
T PF15050_consen 6 DNFWIILAVA 15 (133)
T ss_pred hchHHHHHHH
Confidence 3566666644
No 19
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=28.50 E-value=1.2e+02 Score=32.56 Aligned_cols=27 Identities=37% Similarity=0.653 Sum_probs=17.7
Q ss_pred EEEEeeecccCCCCeEEEEEEECCEEe
Q 043030 309 VRLHFCDIASISLGLLFFNVYVNGNLA 335 (470)
Q Consensus 309 VrLHF~Ei~~~~~~~R~F~VyIng~~~ 335 (470)
|-|-|.+......|-=+|=+++||...
T Consensus 269 ~~l~f~~a~~~~sGLYv~V~~~nghv~ 295 (439)
T PF02480_consen 269 VDLQFTNAPESASGLYVFVVYYNGHVE 295 (439)
T ss_dssp SSEEESS--GGG-EEEEEEEEETTEEE
T ss_pred cceEecCCCcccCceEEEEEEECCeee
Confidence 446677766666777788999998763
No 20
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=27.80 E-value=40 Score=28.19 Aligned_cols=17 Identities=35% Similarity=0.438 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHHhhhcc
Q 043030 8 QALFLLLLSLSSFYGIA 24 (470)
Q Consensus 8 ~~~~~~~~~~~~~~~~~ 24 (470)
+.|+||.|+|..+|++|
T Consensus 4 K~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 4 KAFLLLGLLLAALLLIS 20 (95)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34443334443333333
No 21
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=24.58 E-value=17 Score=29.83 Aligned_cols=6 Identities=17% Similarity=0.169 Sum_probs=3.4
Q ss_pred EEeecc
Q 043030 437 VFKHRT 442 (470)
Q Consensus 437 ~~~~~~ 442 (470)
|++|||
T Consensus 55 C~kRkr 60 (94)
T PF05393_consen 55 CKKRKR 60 (94)
T ss_pred HHHhhh
Confidence 455666
No 22
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=23.44 E-value=74 Score=26.58 Aligned_cols=7 Identities=43% Similarity=0.814 Sum_probs=2.7
Q ss_pred eEEeHHH
Q 043030 420 GILVPLI 426 (470)
Q Consensus 420 ~~i~g~~ 426 (470)
++.+|++
T Consensus 70 gi~vg~~ 76 (96)
T PTZ00382 70 GISVAVV 76 (96)
T ss_pred EEEeehh
Confidence 3344433
No 23
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=21.46 E-value=22 Score=24.59 Aligned_cols=9 Identities=22% Similarity=0.722 Sum_probs=4.7
Q ss_pred ceeEEeHHH
Q 043030 418 NVGILVPLI 426 (470)
Q Consensus 418 ~~~~i~g~~ 426 (470)
.+++|+|.+
T Consensus 5 ~IaIIv~V~ 13 (38)
T PF02439_consen 5 TIAIIVAVV 13 (38)
T ss_pred hhhHHHHHH
Confidence 355555544
Done!