Query 043031
Match_columns 424
No_of_seqs 150 out of 711
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 12:08:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043031.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043031hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 4E-111 8E-116 858.3 38.4 363 49-420 1-374 (374)
2 PRK15451 tRNA cmo(5)U34 methyl 97.4 0.011 2.5E-07 57.1 17.7 191 139-371 33-225 (247)
3 TIGR00740 methyltransferase, p 97.0 0.12 2.5E-06 49.5 19.4 107 164-288 53-160 (239)
4 TIGR02752 MenG_heptapren 2-hep 96.3 0.73 1.6E-05 43.5 19.6 178 154-374 35-216 (231)
5 PLN02233 ubiquinone biosynthes 96.2 1.4 3.1E-05 43.1 21.6 133 152-303 61-195 (261)
6 TIGR02716 C20_methyl_CrtF C-20 95.4 0.87 1.9E-05 45.3 16.6 119 153-292 138-258 (306)
7 PF01209 Ubie_methyltran: ubiE 95.3 0.42 9.1E-06 46.2 13.4 180 155-376 38-220 (233)
8 PLN02336 phosphoethanolamine N 93.6 6.8 0.00015 41.4 19.2 114 152-288 254-368 (475)
9 PRK06202 hypothetical protein; 93.5 1.9 4.1E-05 41.0 13.5 110 161-288 57-166 (232)
10 TIGR01934 MenG_MenH_UbiE ubiqu 93.3 6.6 0.00014 36.2 19.0 117 152-290 27-145 (223)
11 COG2226 UbiE Methylase involve 93.0 9.5 0.00021 37.2 17.4 189 142-373 28-221 (238)
12 PF13489 Methyltransf_23: Meth 92.6 2.1 4.5E-05 37.3 11.4 99 162-293 20-120 (161)
13 PTZ00098 phosphoethanolamine N 92.4 8.9 0.00019 37.5 16.7 113 151-287 39-154 (263)
14 PF13649 Methyltransf_25: Meth 92.3 0.43 9.4E-06 39.1 6.2 97 168-281 1-99 (101)
15 PRK00216 ubiE ubiquinone/menaq 91.6 12 0.00025 35.0 17.7 111 156-287 43-156 (239)
16 PLN02396 hexaprenyldihydroxybe 90.9 5.1 0.00011 40.7 13.5 100 165-288 132-234 (322)
17 PRK14103 trans-aconitate 2-met 90.9 3 6.5E-05 40.3 11.5 107 154-291 19-128 (255)
18 TIGR00477 tehB tellurite resis 90.8 2.1 4.5E-05 39.9 9.9 111 151-285 17-129 (195)
19 TIGR03438 probable methyltrans 90.5 4.8 0.0001 40.2 12.8 117 156-291 57-179 (301)
20 PRK08317 hypothetical protein; 89.9 16 0.00035 33.8 16.4 112 156-288 11-123 (241)
21 PRK05785 hypothetical protein; 89.5 8.9 0.00019 36.6 13.3 94 165-289 52-146 (226)
22 smart00138 MeTrc Methyltransfe 89.2 1.1 2.4E-05 44.0 7.0 53 162-218 97-151 (264)
23 PF12847 Methyltransf_18: Meth 88.7 1 2.2E-05 37.1 5.4 104 167-288 4-110 (112)
24 PF03291 Pox_MCEL: mRNA cappin 88.5 5.4 0.00012 40.7 11.6 112 164-287 62-184 (331)
25 PRK11207 tellurite resistance 87.9 7.6 0.00016 36.1 11.4 111 153-287 19-132 (197)
26 TIGR02072 BioC biotin biosynth 87.9 19 0.00041 33.4 14.3 98 164-288 34-134 (240)
27 PF13847 Methyltransf_31: Meth 87.5 6.4 0.00014 34.6 10.1 103 163-288 2-109 (152)
28 TIGR03587 Pse_Me-ase pseudamin 87.2 9.7 0.00021 35.8 11.7 100 167-291 46-145 (204)
29 PRK12335 tellurite resistance 86.1 11 0.00023 37.3 11.9 96 167-286 123-220 (287)
30 PF08241 Methyltransf_11: Meth 86.0 1.7 3.7E-05 34.0 5.1 93 169-286 1-94 (95)
31 PRK01683 trans-aconitate 2-met 85.7 8.9 0.00019 36.8 10.9 110 152-289 19-130 (258)
32 PLN02336 phosphoethanolamine N 85.0 17 0.00037 38.4 13.6 135 154-315 27-172 (475)
33 PLN02244 tocopherol O-methyltr 83.9 26 0.00056 35.6 13.8 101 164-287 118-221 (340)
34 PLN02232 ubiquinone biosynthes 82.9 33 0.00071 30.8 12.7 81 200-290 1-83 (160)
35 PF03848 TehB: Tellurite resis 81.8 19 0.0004 34.0 10.9 112 154-288 20-132 (192)
36 TIGR00537 hemK_rel_arch HemK-r 80.5 44 0.00096 30.2 13.1 106 167-294 22-145 (179)
37 PRK09489 rsmC 16S ribosomal RN 80.5 33 0.00071 35.1 13.0 118 154-291 186-305 (342)
38 PF09243 Rsm22: Mitochondrial 79.8 10 0.00022 37.5 8.9 139 147-306 12-156 (274)
39 COG2227 UbiG 2-polyprenyl-3-me 79.8 6.1 0.00013 38.5 7.0 100 164-287 59-159 (243)
40 PRK10258 biotin biosynthesis p 77.4 68 0.0015 30.6 15.2 107 151-287 29-138 (251)
41 PRK15001 SAM-dependent 23S rib 76.4 32 0.0007 35.8 11.7 123 154-290 218-341 (378)
42 TIGR03439 methyl_EasF probable 75.9 53 0.0012 33.4 12.8 145 155-315 69-234 (319)
43 TIGR02021 BchM-ChlM magnesium 75.6 39 0.00084 31.6 11.2 116 147-287 36-156 (219)
44 PLN02585 magnesium protoporphy 73.7 37 0.00079 34.4 11.0 104 164-288 144-249 (315)
45 PRK11036 putative S-adenosyl-L 72.7 35 0.00077 32.8 10.4 112 154-287 35-147 (255)
46 PF00891 Methyltransf_2: O-met 72.1 84 0.0018 29.8 12.8 111 154-294 90-205 (241)
47 PRK11705 cyclopropane fatty ac 70.7 51 0.0011 34.2 11.6 112 151-288 154-266 (383)
48 TIGR02081 metW methionine bios 69.5 73 0.0016 29.2 11.3 46 155-214 6-51 (194)
49 PRK06922 hypothetical protein; 69.3 41 0.00089 37.6 10.8 104 166-287 420-535 (677)
50 PRK14968 putative methyltransf 68.7 86 0.0019 27.9 12.3 42 165-219 24-65 (188)
51 PRK10909 rsmD 16S rRNA m(2)G96 65.4 1E+02 0.0023 28.9 11.6 104 166-294 55-164 (199)
52 PF07521 RMMBL: RNA-metabolisi 65.4 14 0.0003 26.0 4.3 38 249-287 1-38 (43)
53 COG1341 Predicted GTPase or GT 61.9 50 0.0011 34.6 9.2 157 147-341 89-254 (398)
54 PRK11873 arsM arsenite S-adeno 60.9 1.6E+02 0.0034 28.5 12.3 100 166-287 79-181 (272)
55 PRK03522 rumB 23S rRNA methylu 60.1 1.3E+02 0.0028 30.1 11.8 99 165-291 174-276 (315)
56 PRK07580 Mg-protoporphyrin IX 59.2 1.5E+02 0.0033 27.4 12.0 100 163-287 62-163 (230)
57 PLN02490 MPBQ/MSBQ methyltrans 58.6 76 0.0016 32.6 9.9 98 164-287 113-213 (340)
58 PRK05134 bifunctional 3-demeth 56.9 1.7E+02 0.0037 27.3 19.0 104 162-288 46-150 (233)
59 COG4106 Tam Trans-aconitate me 56.7 47 0.001 32.3 7.4 110 160-296 26-136 (257)
60 PRK15068 tRNA mo(5)U34 methylt 56.3 2.1E+02 0.0046 28.9 12.7 113 155-288 113-225 (322)
61 PF13679 Methyltransf_32: Meth 56.2 32 0.00069 30.1 6.0 39 160-205 21-61 (141)
62 COG2242 CobL Precorrin-6B meth 56.0 27 0.00058 32.9 5.6 51 159-223 29-82 (187)
63 TIGR00452 methyltransferase, p 54.9 1.5E+02 0.0034 29.9 11.4 113 154-288 111-224 (314)
64 smart00828 PKS_MT Methyltransf 54.5 1.3E+02 0.0027 28.0 10.2 99 167-287 2-102 (224)
65 COG2230 Cfa Cyclopropane fatty 54.5 52 0.0011 32.9 7.7 117 148-286 56-173 (283)
66 TIGR01983 UbiG ubiquinone bios 53.9 1.8E+02 0.004 26.8 13.9 98 164-287 45-147 (224)
67 PF08242 Methyltransf_12: Meth 53.2 15 0.00032 29.5 3.1 95 169-283 1-97 (99)
68 PRK00121 trmB tRNA (guanine-N( 51.7 1.6E+02 0.0035 27.3 10.3 123 164-308 40-171 (202)
69 PF04461 DUF520: Protein of un 50.0 23 0.0005 32.4 4.0 32 196-234 127-158 (160)
70 PF02353 CMAS: Mycolic acid cy 49.8 2.3E+02 0.005 28.0 11.5 114 153-288 51-165 (273)
71 TIGR02085 meth_trns_rumB 23S r 49.0 2.7E+02 0.0058 28.7 12.3 96 167-290 236-335 (374)
72 smart00650 rADc Ribosomal RNA 47.5 1.2E+02 0.0026 27.1 8.4 108 154-290 3-114 (169)
73 TIGR00138 gidB 16S rRNA methyl 44.8 2.5E+02 0.0054 25.7 11.2 95 166-288 44-141 (181)
74 PLN02446 (5-phosphoribosyl)-5- 44.2 29 0.00064 34.3 4.1 27 161-188 55-81 (262)
75 PRK13168 rumA 23S rRNA m(5)U19 43.7 2.7E+02 0.006 29.2 11.7 107 158-290 291-401 (443)
76 TIGR01626 ytfJ_HI0045 conserve 42.1 1.1E+02 0.0023 28.7 7.4 111 164-279 59-182 (184)
77 PRK05412 putative nucleotide-b 41.7 29 0.00063 31.8 3.4 32 196-234 127-158 (161)
78 COG1500 Predicted exosome subu 41.5 80 0.0017 30.6 6.4 64 323-389 88-153 (234)
79 TIGR02129 hisA_euk phosphoribo 41.3 37 0.00081 33.4 4.4 34 161-201 50-83 (253)
80 cd01822 Lysophospholipase_L1_l 39.4 2.4E+02 0.0053 24.5 9.2 21 268-288 89-109 (177)
81 cd02685 MIT_C MIT_C; domain fo 39.1 1.8E+02 0.0038 26.4 7.9 71 162-234 18-91 (148)
82 PRK13944 protein-L-isoaspartat 37.3 3.4E+02 0.0074 25.1 12.0 105 155-287 63-171 (205)
83 TIGR03533 L3_gln_methyl protei 35.1 4.5E+02 0.0098 25.9 12.3 108 165-290 122-252 (284)
84 PRK00107 gidB 16S rRNA methylt 34.3 3.8E+02 0.0083 24.8 13.9 98 165-289 46-145 (187)
85 PF05175 MTS: Methyltransferas 32.9 3.6E+02 0.0078 24.1 10.4 119 154-290 21-141 (170)
86 PRK00811 spermidine synthase; 32.8 4.4E+02 0.0095 25.9 10.5 108 167-289 79-191 (283)
87 TIGR03504 FimV_Cterm FimV C-te 31.9 85 0.0018 22.4 3.8 28 58-89 8-35 (44)
88 COG0052 RpsB Ribosomal protein 31.6 82 0.0018 31.0 4.9 110 164-292 36-168 (252)
89 COG2890 HemK Methylase of poly 30.7 5.3E+02 0.012 25.4 10.7 109 167-293 113-242 (280)
90 TIGR01716 RGG_Cterm transcript 30.4 94 0.002 28.8 5.1 55 49-103 127-182 (220)
91 TIGR03534 RF_mod_PrmC protein- 29.1 4.8E+02 0.01 24.3 12.1 78 164-259 87-166 (251)
92 TIGR02469 CbiT precorrin-6Y C5 28.7 1.7E+02 0.0036 23.8 5.9 44 167-221 22-65 (124)
93 TIGR00755 ksgA dimethyladenosi 28.7 5.2E+02 0.011 24.7 10.4 52 154-218 19-70 (253)
94 COG4783 Putative Zn-dependent 28.4 69 0.0015 34.3 4.1 57 203-260 67-123 (484)
95 TIGR03840 TMPT_Se_Te thiopurin 28.2 5.1E+02 0.011 24.4 10.9 35 166-213 36-70 (213)
96 cd06543 GH18_PF-ChiA-like PF-C 27.8 86 0.0019 31.4 4.5 69 165-236 104-177 (294)
97 PRK07402 precorrin-6B methylas 26.9 2.4E+02 0.0053 25.7 7.2 111 151-289 27-142 (196)
98 TIGR00536 hemK_fam HemK family 26.4 6.2E+02 0.013 24.7 12.8 49 166-229 116-164 (284)
99 PRK13255 thiopurine S-methyltr 26.2 5.6E+02 0.012 24.2 11.5 102 165-288 38-156 (218)
100 KOG1165 Casein kinase (serine/ 26.1 38 0.00083 35.0 1.6 13 162-174 164-176 (449)
101 PF04716 ETC_C1_NDUFA5: ETC co 25.6 1.4E+02 0.003 22.6 4.2 39 306-347 8-46 (57)
102 TIGR00091 tRNA (guanine-N(7)-) 25.4 3.6E+02 0.0078 24.7 8.0 109 165-290 17-133 (194)
103 PTZ00063 histone deacetylase; 25.1 52 0.0011 34.9 2.5 59 249-313 252-316 (436)
104 PF15609 PRTase_2: Phosphoribo 24.9 3.6E+02 0.0078 25.5 7.7 70 160-236 118-187 (191)
105 PRK08287 cobalt-precorrin-6Y C 24.5 2.9E+02 0.0063 24.9 7.1 43 166-219 33-75 (187)
106 PF01408 GFO_IDH_MocA: Oxidore 24.5 1.3E+02 0.0028 24.8 4.4 68 174-260 7-75 (120)
107 PRK14967 putative methyltransf 23.3 6.1E+02 0.013 23.6 12.1 104 166-288 38-158 (223)
108 PRK00274 ksgA 16S ribosomal RN 23.2 1.9E+02 0.0042 28.2 6.0 50 156-218 34-83 (272)
109 TIGR00406 prmA ribosomal prote 22.9 7.3E+02 0.016 24.3 11.6 113 149-287 142-257 (288)
110 PRK09328 N5-glutamine S-adenos 22.6 3.6E+02 0.0078 25.7 7.8 48 162-220 106-153 (275)
111 COG0123 AcuC Deacetylases, inc 22.6 76 0.0017 32.6 3.1 46 249-295 206-255 (340)
112 PF06711 DUF1198: Protein of u 22.6 1E+02 0.0022 27.7 3.4 35 355-390 89-123 (148)
113 TIGR03180 UraD_2 OHCU decarbox 22.6 2.7E+02 0.0058 25.3 6.3 90 133-233 11-114 (158)
114 PF07522 DRMBL: DNA repair met 20.8 1.9E+02 0.0041 24.2 4.7 34 248-287 72-105 (110)
115 PTZ00346 histone deacetylase; 20.2 76 0.0016 33.7 2.5 60 249-314 270-335 (429)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=3.7e-111 Score=858.28 Aligned_cols=363 Identities=36% Similarity=0.661 Sum_probs=332.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCChhhhHHHHHHHHHHHhhcccCCCcccccchhhhhhhcCChHHHH
Q 043031 49 LVHLLLLSAEKIGSQQFDRASIFLDHVDKYSSTTGNPVQRLVHYFSKALRERFNLETGRITSKGLKSEEVMLLLHPEEVM 128 (424)
Q Consensus 49 L~~LLl~cA~Av~~g~~~~A~~lL~~l~~las~~G~~~qRla~yF~eAL~~Rl~~~~~~~~~~~l~~~~~~~~~~~~~~~ 128 (424)
|++||++||+||++||.+.|+.+|++|++++||+|||+||||+||++||.+|+.+. ++..++.+.+.. .++.. .
T Consensus 1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~-~~~~~~~~~~~~----~~~~~-~ 74 (374)
T PF03514_consen 1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGS-GPGLYSALPPSS----PSPSE-S 74 (374)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhcc-CcccccCCCCcc----ccccc-h
Confidence 68999999999999999999999999999999999999999999999999999984 333333332211 11111 1
Q ss_pred HHHHHHHHHHHhcCChhhhHHHHHHHHHHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCC-
Q 043031 129 ASAKQALIACYQKVPFYQVTVFAGIQAVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTP- 207 (424)
Q Consensus 129 ~~~~~a~~~~~e~~P~~kfa~~tANqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~- 207 (424)
.....+++.||++|||+||||||||||||||++|+++||||||||++|+|||+|||+||.|++||| +||||| |++|.
T Consensus 75 ~~~~~a~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp-~LrIT~-i~~~~~ 152 (374)
T PF03514_consen 75 SEQLAAYQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPP-SLRITG-IGPPNS 152 (374)
T ss_pred HHHHHHHHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCC-eEEEEe-ccCCCC
Confidence 122358899999999999999999999999999999999999999999999999999999999999 699999 98754
Q ss_pred -CHHHHHHHHHHHHHHHHhCCCceEEEEEecCCCcc-----cccCCCcEEEEeccccccccCCCc----chHHHHHHHHH
Q 043031 208 -SKQKFEEIENRLANFAETINLPFPFNISFLTDIKD-----FETNEGEVVAVYSPVHLSHMIRKP----NCLETFLTELR 277 (424)
Q Consensus 208 -~~~~l~~tg~rL~~fA~~lgvpFeF~~v~~~~l~~-----l~~~~~E~laVN~~~~Lh~l~~~~----~~~~~~L~~ir 277 (424)
+.+.+++||+||.+||+++||||||++|..+++++ |++++||+|||||+|+||||.+++ ++++.||+.||
T Consensus 153 ~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir 232 (374)
T PF03514_consen 153 GSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR 232 (374)
T ss_pred CcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH
Confidence 68899999999999999999999999986665554 788999999999999999998643 46889999999
Q ss_pred hcCCCeEEEEeeeCCCCCCchHHHHHHHHHHHHHHHHhhhhhcCCCchhHHHHHHHHHhHhHHHHHhhcccccccCCCCh
Q 043031 278 KINPCVMVVIEVESNDNLQTFEDRFFGTLFHFGALFDCLEVCMNRCHANRMTFEEMYAGQHIRNIIASEGEERIFGHMKI 357 (424)
Q Consensus 278 ~L~P~vvvl~E~ea~~ns~~F~~RF~eaL~~YsalFDsLda~~~~~s~~R~~iE~~~lg~eI~niVaceG~~R~ER~e~~ 357 (424)
+|+|+|||++|+|+|||+|+|++||.|||+||+++|||||+++|+++++|..+|+.+||++|+|||||||.+|+||||++
T Consensus 233 ~L~P~vvv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~ 312 (374)
T PF03514_consen 233 SLNPKVVVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERL 312 (374)
T ss_pred hcCCCEEEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhcCCCccccCChhHHHHHHHHHHhcCCCCceEEeecCCEEEEeECCceeEEEeece
Q 043031 358 DGWRDLFNRFGLVEAELSSWSLFQAELILRSFACGSSCTIDRNGECLIIGWKGIPHLSLSVWK 420 (424)
Q Consensus 358 ~~W~~r~~~aGF~~~~ls~~~~~qa~~ll~~~~~~~~~~~~~~~~~L~LgWk~~pL~~~SaW~ 420 (424)
++|+.||++|||+++|+|++++.||+.|+++|+ +++|++++++|||+|||||+||+++||||
T Consensus 313 ~~W~~r~~~aGF~~~~ls~~~~~qa~~ll~~~~-~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr 374 (374)
T PF03514_consen 313 EQWRRRMRRAGFRPVPLSEFAVSQAKLLLRKFP-GDGYTVEEDGGCLLLGWKGRPLVAASAWR 374 (374)
T ss_pred hHHHHHHHhcCCeecCCCHHHHHHHHHHHhccC-CCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence 999999999999999999999999999999998 66789999999999999999999999997
No 2
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.42 E-value=0.011 Score=57.13 Aligned_cols=191 Identities=14% Similarity=0.199 Sum_probs=103.3
Q ss_pred HhcCChhhhHHHHHHHHHHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHH
Q 043031 139 YQKVPFYQVTVFAGIQAVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENR 218 (424)
Q Consensus 139 ~e~~P~~kfa~~tANqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~r 218 (424)
....|.+...|-.++..+-.-+. +.-+|+|+|.|.|.- ...|+.+-.. |. .++|| |+. +...++.+.++
T Consensus 33 ~~~~p~y~~~~~~~~~~~~~~~~--~~~~vLDlGcGtG~~----~~~l~~~~~~-~~-~~v~g-vD~--S~~ml~~A~~~ 101 (247)
T PRK15451 33 QRSVPGYSNIISMIGMLAERFVQ--PGTQVYDLGCSLGAA----TLSVRRNIHH-DN-CKIIA-IDN--SPAMIERCRRH 101 (247)
T ss_pred HhcCCChHHHHHHHHHHHHHhCC--CCCEEEEEcccCCHH----HHHHHHhcCC-CC-CeEEE-EeC--CHHHHHHHHHH
Confidence 34578888888777654332222 234799999999873 3334443212 32 69999 985 77788877777
Q ss_pred HHHHHHhCCCceEEEEEecCCCcccccCCCcEEEEeccccccccCCCcchHHHHHHHH-HhcCCC-eEEEEeeeCCCCCC
Q 043031 219 LANFAETINLPFPFNISFLTDIKDFETNEGEVVAVYSPVHLSHMIRKPNCLETFLTEL-RKINPC-VMVVIEVESNDNLQ 296 (424)
Q Consensus 219 L~~fA~~lgvpFeF~~v~~~~l~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~-vvvl~E~ea~~ns~ 296 (424)
+.++.. .-.++|.. .++.++.....++++. .+.|||+.. ..+..+++.+ +.|+|. +++++|.-...+ +
T Consensus 102 ~~~~~~--~~~v~~~~---~d~~~~~~~~~D~vv~--~~~l~~l~~--~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~-~ 171 (247)
T PRK15451 102 IDAYKA--PTPVDVIE---GDIRDIAIENASMVVL--NFTLQFLEP--SERQALLDKIYQGLNPGGALVLSEKFSFED-A 171 (247)
T ss_pred HHhcCC--CCCeEEEe---CChhhCCCCCCCEEeh--hhHHHhCCH--HHHHHHHHHHHHhcCCCCEEEEEEecCCCc-c
Confidence 654321 11344432 2333333333345444 456788753 3355666665 778996 555666433332 3
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCCchhHHHHHHHHHhHhHHHHHhhcccccccCCCChhhHHHHHhcCCCcc
Q 043031 297 TFEDRFFGTLFHFGALFDCLEVCMNRCHANRMTFEEMYAGQHIRNIIASEGEERIFGHMKIDGWRDLFNRFGLVE 371 (424)
Q Consensus 297 ~F~~RF~eaL~~YsalFDsLda~~~~~s~~R~~iE~~~lg~eI~niVaceG~~R~ER~e~~~~W~~r~~~aGF~~ 371 (424)
...+.+.+..+.|. ....++ ...+++. .....| +-.+++.++..++|++|||..
T Consensus 172 ~~~~~~~~~~~~~~-----~~~g~s-----~~ei~~~--~~~~~~---------~~~~~~~~~~~~~L~~aGF~~ 225 (247)
T PRK15451 172 KVGELLFNMHHDFK-----RANGYS-----ELEISQK--RSMLEN---------VMLTDSVETHKARLHKAGFEH 225 (247)
T ss_pred hhHHHHHHHHHHHH-----HHcCCC-----HHHHHHH--HHHHHh---------hcccCCHHHHHHHHHHcCchh
Confidence 33344443332221 111111 1112211 111222 344567889999999999984
No 3
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=96.96 E-value=0.12 Score=49.54 Aligned_cols=107 Identities=19% Similarity=0.306 Sum_probs=63.9
Q ss_pred CeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEEecCCCccc
Q 043031 164 KKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFNISFLTDIKDF 243 (424)
Q Consensus 164 ~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~v~~~~l~~l 243 (424)
+.-+|+|+|.|.|. ++..|+.+-.. |. .++|| |+. +...++.+.+++.++.. +.+.+|.. .++.++
T Consensus 53 ~~~~iLDlGcG~G~----~~~~l~~~~~~-p~-~~v~g-vD~--s~~ml~~a~~~~~~~~~--~~~v~~~~---~d~~~~ 118 (239)
T TIGR00740 53 PDSNVYDLGCSRGA----ATLSARRNINQ-PN-VKIIG-IDN--SQPMVERCRQHIAAYHS--EIPVEILC---NDIRHV 118 (239)
T ss_pred CCCEEEEecCCCCH----HHHHHHHhcCC-CC-CeEEE-EeC--CHHHHHHHHHHHHhcCC--CCCeEEEE---CChhhC
Confidence 34579999999995 55666655323 33 69999 885 67777777777654321 22334432 234333
Q ss_pred ccCCCcEEEEeccccccccCCCcchHHHHHHHH-HhcCCCeEEEEe
Q 043031 244 ETNEGEVVAVYSPVHLSHMIRKPNCLETFLTEL-RKINPCVMVVIE 288 (424)
Q Consensus 244 ~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvl~E 288 (424)
...+..+++ +.+.|||+.+ .....+|+.+ +.|+|.-.+++-
T Consensus 119 ~~~~~d~v~--~~~~l~~~~~--~~~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 119 EIKNASMVI--LNFTLQFLPP--EDRIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred CCCCCCEEe--eecchhhCCH--HHHHHHHHHHHHhcCCCeEEEEe
Confidence 333334433 4556788753 2345666655 778997766653
No 4
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=96.30 E-value=0.73 Score=43.51 Aligned_cols=178 Identities=13% Similarity=0.165 Sum_probs=88.3
Q ss_pred HHHHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEE
Q 043031 154 QAVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFN 233 (424)
Q Consensus 154 qaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~ 233 (424)
+.++..+.-.+.-+|+|+|.|.|. +...|+.+. +| ..++|| |+. +...++.+.+++. ..+++ ...
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~----~~~~la~~~--~~-~~~v~g-vD~--s~~~~~~a~~~~~----~~~~~-~v~ 99 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTAD----WSIALAEAV--GP-EGHVIG-LDF--SENMLSVGRQKVK----DAGLH-NVE 99 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCH----HHHHHHHHh--CC-CCEEEE-EEC--CHHHHHHHHHHHH----hcCCC-ceE
Confidence 455555543344589999999887 334455442 23 258999 885 5666666665543 23443 122
Q ss_pred EEecCCCcccccCCC--cEEEEeccccccccCCCcchHHHHHH-HHHhcCCCeEEEEeeeCCCCCCchHHHHHHHHHHHH
Q 043031 234 ISFLTDIKDFETNEG--EVVAVYSPVHLSHMIRKPNCLETFLT-ELRKINPCVMVVIEVESNDNLQTFEDRFFGTLFHFG 310 (424)
Q Consensus 234 ~v~~~~l~~l~~~~~--E~laVN~~~~Lh~l~~~~~~~~~~L~-~ir~L~P~vvvl~E~ea~~ns~~F~~RF~eaL~~Ys 310 (424)
.+. .+..++...++ +.|+.+ +.+|++.+ ...+|+ ..+.|+|.-.+++-.....+.+ -+...+.+|.
T Consensus 100 ~~~-~d~~~~~~~~~~fD~V~~~--~~l~~~~~----~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~----~~~~~~~~~~ 168 (231)
T TIGR02752 100 LVH-GNAMELPFDDNSFDYVTIG--FGLRNVPD----YMQVLREMYRVVKPGGKVVCLETSQPTIP----GFKQLYFFYF 168 (231)
T ss_pred EEE-echhcCCCCCCCccEEEEe--cccccCCC----HHHHHHHHHHHcCcCeEEEEEECCCCCCh----HHHHHHHHHH
Confidence 222 12222222222 344444 45677643 345665 4577899866655333333322 2333333332
Q ss_pred HHH-HhhhhhcCCCchhHHHHHHHHHhHhHHHHHhhcccccccCCCChhhHHHHHhcCCCccccC
Q 043031 311 ALF-DCLEVCMNRCHANRMTFEEMYAGQHIRNIIASEGEERIFGHMKIDGWRDLFNRFGLVEAEL 374 (424)
Q Consensus 311 alF-DsLda~~~~~s~~R~~iE~~~lg~eI~niVaceG~~R~ER~e~~~~W~~r~~~aGF~~~~l 374 (424)
..+ ..+...+.... .+...+...+. +--+.++++..|+.+||..+.+
T Consensus 169 ~~~~p~~~~~~~~~~-----~~~~~~~~~~~------------~~~~~~~l~~~l~~aGf~~~~~ 216 (231)
T TIGR02752 169 KYIMPLFGKLFAKSY-----KEYSWLQESTR------------DFPGMDELAEMFQEAGFKDVEV 216 (231)
T ss_pred cChhHHhhHHhcCCH-----HHHHHHHHHHH------------HcCCHHHHHHHHHHcCCCeeEE
Confidence 211 11111121111 11111222222 2335678999999999986544
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=96.18 E-value=1.4 Score=43.05 Aligned_cols=133 Identities=12% Similarity=0.124 Sum_probs=74.1
Q ss_pred HHHHHHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceE
Q 043031 152 GIQAVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFP 231 (424)
Q Consensus 152 ANqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFe 231 (424)
....+++.+.-.+.-+|+|+|.|.|. +...|+.+. + |. -+||| |+. +.+.++.+.++....++...-..+
T Consensus 61 ~r~~~~~~~~~~~~~~VLDlGcGtG~----~~~~la~~~-~-~~-~~V~g-vD~--S~~ml~~A~~r~~~~~~~~~~~i~ 130 (261)
T PLN02233 61 WKRMAVSWSGAKMGDRVLDLCCGSGD----LAFLLSEKV-G-SD-GKVMG-LDF--SSEQLAVAASRQELKAKSCYKNIE 130 (261)
T ss_pred HHHHHHHHhCCCCCCEEEEECCcCCH----HHHHHHHHh-C-CC-CEEEE-EEC--CHHHHHHHHHHhhhhhhccCCCeE
Confidence 34444444443445689999999997 334566553 2 32 48999 985 777888777665332332222333
Q ss_pred EEEEecCCCcccccCCCcEEEEeccccccccCCCcchHHHHHH-HHHhcCCCeE-EEEeeeCCCCCCchHHHHH
Q 043031 232 FNISFLTDIKDFETNEGEVVAVYSPVHLSHMIRKPNCLETFLT-ELRKINPCVM-VVIEVESNDNLQTFEDRFF 303 (424)
Q Consensus 232 F~~v~~~~l~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~-~ir~L~P~vv-vl~E~ea~~ns~~F~~RF~ 303 (424)
|..- +..++...++..=+|-+.+.|||+.+ ...+|+ ..|-|+|.-. +++|-. .....|...+.
T Consensus 131 ~~~~---d~~~lp~~~~sfD~V~~~~~l~~~~d----~~~~l~ei~rvLkpGG~l~i~d~~--~~~~~~~~~~~ 195 (261)
T PLN02233 131 WIEG---DATDLPFDDCYFDAITMGYGLRNVVD----RLKAMQEMYRVLKPGSRVSILDFN--KSTQPFTTSMQ 195 (261)
T ss_pred EEEc---ccccCCCCCCCEeEEEEecccccCCC----HHHHHHHHHHHcCcCcEEEEEECC--CCCcHHHHHHH
Confidence 4322 33444444443444455677888753 345555 4478899744 444443 22334555443
No 6
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=95.39 E-value=0.87 Score=45.31 Aligned_cols=119 Identities=14% Similarity=0.140 Sum_probs=66.1
Q ss_pred HHHHHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEE
Q 043031 153 IQAVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPF 232 (424)
Q Consensus 153 NqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF 232 (424)
.+.|++.+.-.+.-+|+|+|-|.|. +...++++. | .+++|+ ++. ...++.+.+ .++..|+.=.+
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~----~~~~~~~~~---p-~~~~~~-~D~---~~~~~~a~~----~~~~~gl~~rv 201 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGD----ISAAMLKHF---P-ELDSTI-LNL---PGAIDLVNE----NAAEKGVADRM 201 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhH----HHHHHHHHC---C-CCEEEE-Eec---HHHHHHHHH----HHHhCCccceE
Confidence 4667777765555699999999883 555666663 4 379999 764 244554444 34555653223
Q ss_pred EEEecCCCcccccCCCcEEEEeccccccccCCCcchHHHHHHHH-HhcCCC-eEEEEeeeCC
Q 043031 233 NISFLTDIKDFETNEGEVVAVYSPVHLSHMIRKPNCLETFLTEL-RKINPC-VMVVIEVESN 292 (424)
Q Consensus 233 ~~v~~~~l~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~-vvvl~E~ea~ 292 (424)
+.+.. +..+....+.+++.+. ..||+..+ .....+|+.+ +.|+|. .++++|.-.+
T Consensus 202 ~~~~~-d~~~~~~~~~D~v~~~--~~lh~~~~--~~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 202 RGIAV-DIYKESYPEADAVLFC--RILYSANE--QLSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred EEEec-CccCCCCCCCCEEEeE--hhhhcCCh--HHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 33322 3222122233444433 24676532 2334667655 789995 4556665443
No 7
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=95.26 E-value=0.42 Score=46.17 Aligned_cols=180 Identities=19% Similarity=0.200 Sum_probs=69.3
Q ss_pred HHHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEE
Q 043031 155 AVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFNI 234 (424)
Q Consensus 155 aIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~ 234 (424)
.+++.+...+..+|+|.+.|.|-- ...|+.+. +|. -+||| ++. +...|+.+.+++.+.... +.+|..
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~----~~~l~~~~-~~~--~~v~~-vD~--s~~ML~~a~~k~~~~~~~---~i~~v~ 104 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDV----TRELARRV-GPN--GKVVG-VDI--SPGMLEVARKKLKREGLQ---NIEFVQ 104 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHH----HHHHGGGS-S-----EEEE-EES---HHHHHHHHHHHHHTT-----SEEEEE
T ss_pred HHHhccCCCCCCEEEEeCCChHHH----HHHHHHHC-CCc--cEEEE-ecC--CHHHHHHHHHHHHhhCCC---CeeEEE
Confidence 344555556667999999999953 33455553 232 48999 885 888888888887765433 223322
Q ss_pred EecCCCcccccCCCcEEEEeccccccccCCCcchHHHHH-HHHHhcCCCe-EEEEeeeCCCCCCchHHHHHHHHHHHHHH
Q 043031 235 SFLTDIKDFETNEGEVVAVYSPVHLSHMIRKPNCLETFL-TELRKINPCV-MVVIEVESNDNLQTFEDRFFGTLFHFGAL 312 (424)
Q Consensus 235 v~~~~l~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L-~~ir~L~P~v-vvl~E~ea~~ns~~F~~RF~eaL~~Ysal 312 (424)
.+.++|...++..=+|-|.|.||++.+ .+..| ...|-|+|.- ++++|-.-..| .++ ...+..|...
T Consensus 105 ---~da~~lp~~d~sfD~v~~~fglrn~~d----~~~~l~E~~RVLkPGG~l~ile~~~p~~--~~~---~~~~~~y~~~ 172 (233)
T PF01209_consen 105 ---GDAEDLPFPDNSFDAVTCSFGLRNFPD----RERALREMYRVLKPGGRLVILEFSKPRN--PLL---RALYKFYFKY 172 (233)
T ss_dssp ----BTTB--S-TT-EEEEEEES-GGG-SS----HHHHHHHHHHHEEEEEEEEEEEEEB-SS--HHH---HHHHHH----
T ss_pred ---cCHHHhcCCCCceeEEEHHhhHHhhCC----HHHHHHHHHHHcCCCeEEEEeeccCCCC--chh---hceeeeeecc
Confidence 345556677777778889999999865 33444 4557889965 44455443322 233 3333444442
Q ss_pred HH-hhhhhcCCCchhHHHHHHHHHhHhHHHHHhhcccccccCCCChhhHHHHHhcCCCccccCCh
Q 043031 313 FD-CLEVCMNRCHANRMTFEEMYAGQHIRNIIASEGEERIFGHMKIDGWRDLFNRFGLVEAELSS 376 (424)
Q Consensus 313 FD-sLda~~~~~s~~R~~iE~~~lg~eI~niVaceG~~R~ER~e~~~~W~~r~~~aGF~~~~ls~ 376 (424)
+- -+...++.+ +.. -.+|.+-|.+.... ++=.+.|+++||+.+...+
T Consensus 173 ilP~~g~l~~~~---~~~--Y~yL~~Si~~f~~~------------~~~~~~l~~~Gf~~v~~~~ 220 (233)
T PF01209_consen 173 ILPLIGRLLSGD---REA--YRYLPESIRRFPSP------------EELKELLEEAGFKNVEYRP 220 (233)
T ss_dssp -----------------------------------------------------------------
T ss_pred cccccccccccc---ccc--cccccccccccccc------------ccccccccccccccccccc
Confidence 22 222223322 111 23566666654333 2345678899998665533
No 8
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=93.62 E-value=6.8 Score=41.39 Aligned_cols=114 Identities=11% Similarity=0.137 Sum_probs=66.8
Q ss_pred HHHHHHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceE
Q 043031 152 GIQAVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFP 231 (424)
Q Consensus 152 ANqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFe 231 (424)
....+++.+.-.+.-+|+|+|.|.|. +...|+.+.+ .++|| |+. +...++.+.++. ...+...+
T Consensus 254 ~te~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~~-----~~v~g-vDi--S~~~l~~A~~~~----~~~~~~v~ 317 (475)
T PLN02336 254 TTKEFVDKLDLKPGQKVLDVGCGIGG----GDFYMAENFD-----VHVVG-IDL--SVNMISFALERA----IGRKCSVE 317 (475)
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCCH----HHHHHHHhcC-----CEEEE-EEC--CHHHHHHHHHHh----hcCCCceE
Confidence 34556666643445689999999995 4455776642 37999 885 666666655442 23444555
Q ss_pred EEEEecCCCcccccCCCcEEEEeccccccccCCCcchHHHHHH-HHHhcCCCeEEEEe
Q 043031 232 FNISFLTDIKDFETNEGEVVAVYSPVHLSHMIRKPNCLETFLT-ELRKINPCVMVVIE 288 (424)
Q Consensus 232 F~~v~~~~l~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~-~ir~L~P~vvvl~E 288 (424)
|... ++.++.+.++..=+|-|...++|+.+ ...+|+ ..+.|+|.-.+++.
T Consensus 318 ~~~~---d~~~~~~~~~~fD~I~s~~~l~h~~d----~~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 318 FEVA---DCTKKTYPDNSFDVIYSRDTILHIQD----KPALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred EEEc---CcccCCCCCCCEEEEEECCcccccCC----HHHHHHHHHHHcCCCeEEEEE
Confidence 5443 23222222332334445556788753 334554 44778998777665
No 9
>PRK06202 hypothetical protein; Provisional
Probab=93.54 E-value=1.9 Score=41.02 Aligned_cols=110 Identities=12% Similarity=0.150 Sum_probs=59.1
Q ss_pred cCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEEecCCC
Q 043031 161 SSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFNISFLTDI 240 (424)
Q Consensus 161 ~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~v~~~~l 240 (424)
...+...|+|+|.|.|. +...|.....+ .||. .+||| |+. +.+.++.+.++. +..|+++.. ...+.+
T Consensus 57 ~~~~~~~iLDlGcG~G~-~~~~L~~~~~~-~g~~--~~v~g-vD~--s~~~l~~a~~~~----~~~~~~~~~--~~~~~l 123 (232)
T PRK06202 57 SADRPLTLLDIGCGGGD-LAIDLARWARR-DGLR--LEVTA-IDP--DPRAVAFARANP----RRPGVTFRQ--AVSDEL 123 (232)
T ss_pred CCCCCcEEEEeccCCCH-HHHHHHHHHHh-CCCC--cEEEE-EcC--CHHHHHHHHhcc----ccCCCeEEE--Eecccc
Confidence 33456789999999996 33333222222 2443 68999 985 666666554442 123454433 322222
Q ss_pred cccccCCCcEEEEeccccccccCCCcchHHHHHHHHHhcCCCeEEEEe
Q 043031 241 KDFETNEGEVVAVYSPVHLSHMIRKPNCLETFLTELRKINPCVMVVIE 288 (424)
Q Consensus 241 ~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L~P~vvvl~E 288 (424)
...++..=+|-|.+.|||+.+ .....+|+.+.++.-..+++.+
T Consensus 124 ---~~~~~~fD~V~~~~~lhh~~d--~~~~~~l~~~~r~~~~~~~i~d 166 (232)
T PRK06202 124 ---VAEGERFDVVTSNHFLHHLDD--AEVVRLLADSAALARRLVLHND 166 (232)
T ss_pred ---cccCCCccEEEECCeeecCCh--HHHHHHHHHHHHhcCeeEEEec
Confidence 222333333334456899864 2355788877665545555443
No 10
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=93.31 E-value=6.6 Score=36.21 Aligned_cols=117 Identities=22% Similarity=0.275 Sum_probs=63.5
Q ss_pred HHHHHHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceE
Q 043031 152 GIQAVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFP 231 (424)
Q Consensus 152 ANqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFe 231 (424)
.-+.+++.+...+.-.|+|+|.|.|. +...++.+ +|+ ..++|+ ++. +...++.+.+++. .+-...
T Consensus 27 ~~~~~~~~~~~~~~~~vldiG~G~G~----~~~~~~~~--~~~-~~~~~~-iD~--~~~~~~~~~~~~~-----~~~~i~ 91 (223)
T TIGR01934 27 WRRRAVKLIGVFKGQKVLDVACGTGD----LAIELAKS--APD-RGKVTG-VDF--SSEMLEVAKKKSE-----LPLNIE 91 (223)
T ss_pred HHHHHHHHhccCCCCeEEEeCCCCCh----hHHHHHHh--cCC-CceEEE-EEC--CHHHHHHHHHHhc-----cCCCce
Confidence 33456666655567799999999885 34445544 243 268999 874 5566666655543 222333
Q ss_pred EEEEecCCCcccccCCCcEEEEeccccccccCCCcchHHHHHHHH-HhcCCCeEEEE-eee
Q 043031 232 FNISFLTDIKDFETNEGEVVAVYSPVHLSHMIRKPNCLETFLTEL-RKINPCVMVVI-EVE 290 (424)
Q Consensus 232 F~~v~~~~l~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvl~-E~e 290 (424)
|... +..++...++..=+|-+.+.+|++.+ .+.+|+.+ +.|+|.-.+++ +..
T Consensus 92 ~~~~---d~~~~~~~~~~~D~i~~~~~~~~~~~----~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 92 FIQA---DAEALPFEDNSFDAVTIAFGLRNVTD----IQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred EEec---chhcCCCCCCcEEEEEEeeeeCCccc----HHHHHHHHHHHcCCCcEEEEEEec
Confidence 4332 22222222232333334455777643 34555544 66788765544 443
No 11
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=93.00 E-value=9.5 Score=37.16 Aligned_cols=189 Identities=14% Similarity=0.177 Sum_probs=113.4
Q ss_pred CChhhhH-HHHHHHHHHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHH
Q 043031 142 VPFYQVT-VFAGIQAVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLA 220 (424)
Q Consensus 142 ~P~~kfa-~~tANqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~ 220 (424)
.+++.|+ |.+=+++..+.+.-.+--+|+|.+.|.|- +.-.|++.-| + -+||| ++. +...|+.+.+++.
T Consensus 28 n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd----~a~~~~k~~g--~--g~v~~-~D~--s~~ML~~a~~k~~ 96 (238)
T COG2226 28 NDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGD----MALLLAKSVG--T--GEVVG-LDI--SESMLEVAREKLK 96 (238)
T ss_pred cccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccH----HHHHHHHhcC--C--ceEEE-EEC--CHHHHHHHHHHhh
Confidence 4555555 45666777776644467899999999884 3444555543 3 58999 985 7788888877755
Q ss_pred HHHHhCCCc-eEEEEEecCCCcccccCCCcEEEEeccccccccCCCcchHHHHHHHH-HhcCCCeEEEEeeeCCCCCCch
Q 043031 221 NFAETINLP-FPFNISFLTDIKDFETNEGEVVAVYSPVHLSHMIRKPNCLETFLTEL-RKINPCVMVVIEVESNDNLQTF 298 (424)
Q Consensus 221 ~fA~~lgvp-FeF~~v~~~~l~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvl~E~ea~~ns~~F 298 (424)
+ .|+. ++|.. .+.+.|...++-.=+|.+.|.||++.+ .+.+|+-+ |=|+|...+++-.=.....+.|
T Consensus 97 ~----~~~~~i~fv~---~dAe~LPf~D~sFD~vt~~fglrnv~d----~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~ 165 (238)
T COG2226 97 K----KGVQNVEFVV---GDAENLPFPDNSFDAVTISFGLRNVTD----IDKALKEMYRVLKPGGRLLVLEFSKPDNPVL 165 (238)
T ss_pred c----cCccceEEEE---echhhCCCCCCccCEEEeeehhhcCCC----HHHHHHHHHHhhcCCeEEEEEEcCCCCchhh
Confidence 4 3332 33322 244446666666677888899999875 55667655 7789998777655444444433
Q ss_pred HHHHHHHHH-HHHH-HHHhhhhhcCCCchhHHHHHHHHHhHhHHHHHhhcccccccCCCChhhHHHHHhcCCCcccc
Q 043031 299 EDRFFGTLF-HFGA-LFDCLEVCMNRCHANRMTFEEMYAGQHIRNIIASEGEERIFGHMKIDGWRDLFNRFGLVEAE 373 (424)
Q Consensus 299 ~~RF~eaL~-~Ysa-lFDsLda~~~~~s~~R~~iE~~~lg~eI~niVaceG~~R~ER~e~~~~W~~r~~~aGF~~~~ 373 (424)
...++ ||.. ++=.+......+.... .++...|.. +-..+.=.+.++.+||..+.
T Consensus 166 ----~~~~~~~~~~~v~P~~g~~~~~~~~~y-----~yL~eSi~~------------~p~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 166 ----RKAYILYYFKYVLPLIGKLVAKDAEAY-----EYLAESIRR------------FPDQEELKQMIEKAGFEEVR 221 (238)
T ss_pred ----HHHHHHHHHHhHhhhhceeeecChHHH-----HHHHHHHHh------------CCCHHHHHHHHHhcCceEEe
Confidence 23333 4444 5545544433233332 233333443 33344556667788997544
No 12
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=92.57 E-value=2.1 Score=37.31 Aligned_cols=99 Identities=28% Similarity=0.342 Sum_probs=53.7
Q ss_pred CCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEEecCCCc
Q 043031 162 SAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFNISFLTDIK 241 (424)
Q Consensus 162 g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~v~~~~l~ 241 (424)
..+.-.|+|+|.|.| . +.+.|+.+ | .++|| ++. +...++. .++.+.-....
T Consensus 20 ~~~~~~vLDiGcG~G-~---~~~~l~~~--~----~~~~g-~D~--~~~~~~~-----------~~~~~~~~~~~----- 70 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTG-S---FLRALAKR--G----FEVTG-VDI--SPQMIEK-----------RNVVFDNFDAQ----- 70 (161)
T ss_dssp TTTTSEEEEESSTTS-H---HHHHHHHT--T----SEEEE-EES--SHHHHHH-----------TTSEEEEEECH-----
T ss_pred cCCCCEEEEEcCCCC-H---HHHHHHHh--C----CEEEE-EEC--CHHHHhh-----------hhhhhhhhhhh-----
Confidence 355669999999999 3 45555554 2 28999 875 4444444 22222211110
Q ss_pred ccccCCCcEEEEeccccccccCCCcchHHHHHHHH-HhcCCCeEEEE-eeeCCC
Q 043031 242 DFETNEGEVVAVYSPVHLSHMIRKPNCLETFLTEL-RKINPCVMVVI-EVESND 293 (424)
Q Consensus 242 ~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvl~-E~ea~~ 293 (424)
+....++-.=+|-|...|||+.+ ...+|+.| +.|+|.-++++ +...+.
T Consensus 71 ~~~~~~~~fD~i~~~~~l~~~~d----~~~~l~~l~~~LkpgG~l~~~~~~~~~ 120 (161)
T PF13489_consen 71 DPPFPDGSFDLIICNDVLEHLPD----PEEFLKELSRLLKPGGYLVISDPNRDD 120 (161)
T ss_dssp THHCHSSSEEEEEEESSGGGSSH----HHHHHHHHHHCEEEEEEEEEEEEBTTS
T ss_pred hhhccccchhhHhhHHHHhhccc----HHHHHHHHHHhcCCCCEEEEEEcCCcc
Confidence 11112233333444466899873 45667666 55788554444 555433
No 13
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=92.39 E-value=8.9 Score=37.49 Aligned_cols=113 Identities=12% Similarity=0.255 Sum_probs=62.8
Q ss_pred HHHHHHHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCce
Q 043031 151 AGIQAVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPF 230 (424)
Q Consensus 151 tANqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpF 230 (424)
-+.+.+++.+.-.+.-+|+|+|.|.|.-- ..|+.+.+ .++|| |+. +...++.+.++... .-..
T Consensus 39 ~~~~~~l~~l~l~~~~~VLDiGcG~G~~a----~~la~~~~-----~~v~g-iD~--s~~~~~~a~~~~~~-----~~~i 101 (263)
T PTZ00098 39 EATTKILSDIELNENSKVLDIGSGLGGGC----KYINEKYG-----AHVHG-VDI--CEKMVNIAKLRNSD-----KNKI 101 (263)
T ss_pred HHHHHHHHhCCCCCCCEEEEEcCCCChhh----HHHHhhcC-----CEEEE-EEC--CHHHHHHHHHHcCc-----CCce
Confidence 44567777776556678999999999732 34444321 47999 874 56566655554332 1123
Q ss_pred EEEEEecCCCcccccCCC--cEEEEeccccccccCCCcchHHHHHHHH-HhcCCCeEEEE
Q 043031 231 PFNISFLTDIKDFETNEG--EVVAVYSPVHLSHMIRKPNCLETFLTEL-RKINPCVMVVI 287 (424)
Q Consensus 231 eF~~v~~~~l~~l~~~~~--E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvl~ 287 (424)
+|... +..+....++ ++++. ...++|+.. .....+|+.+ +.|+|.-.+++
T Consensus 102 ~~~~~---D~~~~~~~~~~FD~V~s--~~~l~h~~~--~d~~~~l~~i~r~LkPGG~lvi 154 (263)
T PTZ00098 102 EFEAN---DILKKDFPENTFDMIYS--RDAILHLSY--ADKKKLFEKCYKWLKPNGILLI 154 (263)
T ss_pred EEEEC---CcccCCCCCCCeEEEEE--hhhHHhCCH--HHHHHHHHHHHHHcCCCcEEEE
Confidence 33322 2222222222 23333 234566642 2355677655 77899766665
No 14
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=92.26 E-value=0.43 Score=39.13 Aligned_cols=97 Identities=25% Similarity=0.419 Sum_probs=55.3
Q ss_pred EEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEEecCCCcccccCC
Q 043031 168 IIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFNISFLTDIKDFETNE 247 (424)
Q Consensus 168 IIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~v~~~~l~~l~~~~ 247 (424)
|+|+|.|.|..=..|.+.+ .+ ||+ .++|| |+. +...++.+.++..+ .|++.+|.. .+..++....
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~--~~~--~~~~g-vD~--s~~~l~~~~~~~~~----~~~~~~~~~---~D~~~l~~~~ 65 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DA--GPS--SRVIG-VDI--SPEMLELAKKRFSE----DGPKVRFVQ---ADARDLPFSD 65 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS----------SEEEE-EES---HHHHHHHHHHSHH----TTTTSEEEE---SCTTCHHHHS
T ss_pred CEEeecCCcHHHHHHHHHh-hh--ccc--ceEEE-EEC--CHHHHHHHHHhchh----cCCceEEEE---CCHhHCcccC
Confidence 7999999998766666665 22 343 69999 984 77777776666544 456666632 3454444333
Q ss_pred CcE-EEEeccccccccCCCcchHHHHHHHHHh-cCC
Q 043031 248 GEV-VAVYSPVHLSHMIRKPNCLETFLTELRK-INP 281 (424)
Q Consensus 248 ~E~-laVN~~~~Lh~l~~~~~~~~~~L~~ir~-L~P 281 (424)
+.. +||++...+||+. +..+..+|+.+.+ |+|
T Consensus 66 ~~~D~v~~~~~~~~~~~--~~~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 66 GKFDLVVCSGLSLHHLS--PEELEALLRRIARLLRP 99 (101)
T ss_dssp SSEEEEEE-TTGGGGSS--HHHHHHHHHHHHHTEEE
T ss_pred CCeeEEEEcCCccCCCC--HHHHHHHHHHHHHHhCC
Confidence 333 4444455588854 3456777776644 344
No 15
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=91.61 E-value=12 Score=34.98 Aligned_cols=111 Identities=19% Similarity=0.244 Sum_probs=58.0
Q ss_pred HHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEE
Q 043031 156 VIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFNIS 235 (424)
Q Consensus 156 IleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~v 235 (424)
+++.+.-.+..+|+|+|.|.|. +...++.+ +|+ ..++|+ ++. +...++.+.+++... ..+.+..|...
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~----~~~~l~~~--~~~-~~~v~~-~D~--s~~~~~~a~~~~~~~--~~~~~~~~~~~ 110 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGD----LAIALAKA--VGK-TGEVVG-LDF--SEGMLAVGREKLRDL--GLSGNVEFVQG 110 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCH----HHHHHHHH--cCC-CCeEEE-EeC--CHHHHHHHHHhhccc--ccccCeEEEec
Confidence 3444433345789999999985 33444444 233 478999 874 555566555554321 12223444333
Q ss_pred ecCCCcccccCCC--cEEEEeccccccccCCCcchHHHHHHHH-HhcCCCeEEEE
Q 043031 236 FLTDIKDFETNEG--EVVAVYSPVHLSHMIRKPNCLETFLTEL-RKINPCVMVVI 287 (424)
Q Consensus 236 ~~~~l~~l~~~~~--E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvl~ 287 (424)
+..++...++ +.++. .+.||++.+ .+.+|+.+ +.|+|.-.+++
T Consensus 111 ---d~~~~~~~~~~~D~I~~--~~~l~~~~~----~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 111 ---DAEALPFPDNSFDAVTI--AFGLRNVPD----IDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred ---ccccCCCCCCCccEEEE--ecccccCCC----HHHHHHHHHHhccCCcEEEE
Confidence 2222222222 34433 345677643 44566554 66788765544
No 16
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=90.89 E-value=5.1 Score=40.67 Aligned_cols=100 Identities=17% Similarity=0.205 Sum_probs=57.1
Q ss_pred eeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCC--ceEEEEEecCCCcc
Q 043031 165 KIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINL--PFPFNISFLTDIKD 242 (424)
Q Consensus 165 ~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgv--pFeF~~v~~~~l~~ 242 (424)
.-.|+|+|.|.|. +...|+.+ | .++|| |+. +...++.+.++ ++..++ ..+|..- +.++
T Consensus 132 g~~ILDIGCG~G~----~s~~La~~-g-----~~V~G-ID~--s~~~i~~Ar~~----~~~~~~~~~i~~~~~---dae~ 191 (322)
T PLN02396 132 GLKFIDIGCGGGL----LSEPLARM-G-----ATVTG-VDA--VDKNVKIARLH----ADMDPVTSTIEYLCT---TAEK 191 (322)
T ss_pred CCEEEEeeCCCCH----HHHHHHHc-C-----CEEEE-EeC--CHHHHHHHHHH----HHhcCcccceeEEec---CHHH
Confidence 3479999999997 45567643 2 37999 985 56666555433 222222 3344332 2233
Q ss_pred cccCCCcEEEEeccccccccCCCcchHHHHHHHH-HhcCCCeEEEEe
Q 043031 243 FETNEGEVVAVYSPVHLSHMIRKPNCLETFLTEL-RKINPCVMVVIE 288 (424)
Q Consensus 243 l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvl~E 288 (424)
+...++..=+|-|...|||+.+ .+.+|+.+ +-|+|.-.+++.
T Consensus 192 l~~~~~~FD~Vi~~~vLeHv~d----~~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 192 LADEGRKFDAVLSLEVIEHVAN----PAEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred hhhccCCCCEEEEhhHHHhcCC----HHHHHHHHHHHcCCCcEEEEE
Confidence 3222222323444556899875 34677666 556998777765
No 17
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=90.87 E-value=3 Score=40.26 Aligned_cols=107 Identities=17% Similarity=0.297 Sum_probs=62.2
Q ss_pred HHHHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEE
Q 043031 154 QAVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFN 233 (424)
Q Consensus 154 qaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~ 233 (424)
..+++.+.-.+.-+|+|+|.|.|. +...|+.+. |. .++|| ++. +...++.+ +..++.| .
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~----~~~~l~~~~---p~-~~v~g-vD~--s~~~~~~a--------~~~~~~~--~ 77 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGN----LTRYLARRW---PG-AVIEA-LDS--SPEMVAAA--------RERGVDA--R 77 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCH----HHHHHHHHC---CC-CEEEE-EEC--CHHHHHHH--------HhcCCcE--E
Confidence 356666655555789999999993 556777762 32 58999 885 55555443 3335543 2
Q ss_pred EEecCCCcccccCCC--cEEEEeccccccccCCCcchHHHHHH-HHHhcCCCeEEEEeeeC
Q 043031 234 ISFLTDIKDFETNEG--EVVAVYSPVHLSHMIRKPNCLETFLT-ELRKINPCVMVVIEVES 291 (424)
Q Consensus 234 ~v~~~~l~~l~~~~~--E~laVN~~~~Lh~l~~~~~~~~~~L~-~ir~L~P~vvvl~E~ea 291 (424)
. .+..++. ..+ +.|+.| ..|||+.+ ...+|+ ..+.|+|.-.+++....
T Consensus 78 ~---~d~~~~~-~~~~fD~v~~~--~~l~~~~d----~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 78 T---GDVRDWK-PKPDTDVVVSN--AALQWVPE----HADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred E---cChhhCC-CCCCceEEEEe--hhhhhCCC----HHHHHHHHHHhCCCCcEEEEEcCC
Confidence 2 2333321 122 344444 45788753 234555 45779998777665433
No 18
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=90.81 E-value=2.1 Score=39.88 Aligned_cols=111 Identities=14% Similarity=0.155 Sum_probs=64.8
Q ss_pred HHHHHHHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCce
Q 043031 151 AGIQAVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPF 230 (424)
Q Consensus 151 tANqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpF 230 (424)
++...|++++.-.+.-+|+|+|.|.|.--. .||.+ | .++|| |+. +...++.+.+ .++..|++.
T Consensus 17 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~a~----~la~~-g-----~~V~~-iD~--s~~~l~~a~~----~~~~~~~~v 79 (195)
T TIGR00477 17 TTHSAVREAVKTVAPCKTLDLGCGQGRNSL----YLSLA-G-----YDVRA-WDH--NPASIASVLD----MKARENLPL 79 (195)
T ss_pred CchHHHHHHhccCCCCcEEEeCCCCCHHHH----HHHHC-C-----CeEEE-EEC--CHHHHHHHHH----HHHHhCCCc
Confidence 456788888875555699999999997433 34444 2 36899 875 5555554443 344557765
Q ss_pred EEEEEecCCCcccccC-CCcEEEEeccccccccCCCcchHHHHHHHH-HhcCCCeEE
Q 043031 231 PFNISFLTDIKDFETN-EGEVVAVYSPVHLSHMIRKPNCLETFLTEL-RKINPCVMV 285 (424)
Q Consensus 231 eF~~v~~~~l~~l~~~-~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvv 285 (424)
.+.... +.+..+. .=+.++.+. .+|++.. +.+..+++.+ +.|+|.-.+
T Consensus 80 ~~~~~d---~~~~~~~~~fD~I~~~~--~~~~~~~--~~~~~~l~~~~~~LkpgG~l 129 (195)
T TIGR00477 80 RTDAYD---INAAALNEDYDFIFSTV--VFMFLQA--GRVPEIIANMQAHTRPGGYN 129 (195)
T ss_pred eeEecc---chhccccCCCCEEEEec--ccccCCH--HHHHHHHHHHHHHhCCCcEE
Confidence 444332 2222221 123444443 3577642 3456777765 678998753
No 19
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=90.50 E-value=4.8 Score=40.18 Aligned_cols=117 Identities=15% Similarity=0.252 Sum_probs=73.5
Q ss_pred HHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEE
Q 043031 156 VIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFNIS 235 (424)
Q Consensus 156 IleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~v 235 (424)
|.+++.. ...|||+|.|.|.-=..|++++.. + .++|| |+. |.+.|+.+.++|.+- .-+++ +..+
T Consensus 57 ia~~~~~--~~~iLELGcGtG~~t~~Ll~~l~~-----~--~~~~~-iDi--S~~mL~~a~~~l~~~--~p~~~--v~~i 120 (301)
T TIGR03438 57 IAAATGA--GCELVELGSGSSRKTRLLLDALRQ-----P--ARYVP-IDI--SADALKESAAALAAD--YPQLE--VHGI 120 (301)
T ss_pred HHHhhCC--CCeEEecCCCcchhHHHHHHhhcc-----C--CeEEE-EEC--CHHHHHHHHHHHHhh--CCCce--EEEE
Confidence 4444532 357999999999766677777632 2 57999 985 888899998888641 12344 3334
Q ss_pred ecCCCcc-cccC----CCcEEEEeccccccccCCCcchHHHHHHHH-HhcCCCeEEEEeeeC
Q 043031 236 FLTDIKD-FETN----EGEVVAVYSPVHLSHMIRKPNCLETFLTEL-RKINPCVMVVIEVES 291 (424)
Q Consensus 236 ~~~~l~~-l~~~----~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvl~E~ea 291 (424)
.. +..+ +... .+..+++.+...++++. +.....+|+.+ +.|+|.-..++.-+.
T Consensus 121 ~g-D~~~~~~~~~~~~~~~~~~~~~gs~~~~~~--~~e~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 121 CA-DFTQPLALPPEPAAGRRLGFFPGSTIGNFT--PEEAVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred EE-cccchhhhhcccccCCeEEEEecccccCCC--HHHHHHHHHHHHHhcCCCCEEEEeccC
Confidence 32 3322 2111 12466776666677774 34456788877 568998776665544
No 20
>PRK08317 hypothetical protein; Provisional
Probab=89.93 E-value=16 Score=33.78 Aligned_cols=112 Identities=21% Similarity=0.216 Sum_probs=57.4
Q ss_pred HHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEE
Q 043031 156 VIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFNIS 235 (424)
Q Consensus 156 IleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~v 235 (424)
+++.+.-.+.-+|+|+|.|.|. +...++.+. + |. -++|| ++. +...++.+.++. ...+...+|...
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~----~~~~~a~~~-~-~~-~~v~~-~d~--~~~~~~~a~~~~----~~~~~~~~~~~~ 76 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGN----DARELARRV-G-PE-GRVVG-IDR--SEAMLALAKERA----AGLGPNVEFVRG 76 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCH----HHHHHHHhc-C-CC-cEEEE-EeC--CHHHHHHHHHHh----hCCCCceEEEec
Confidence 4555554555689999999874 333455443 2 32 58999 875 555555554441 112223333332
Q ss_pred ecCCCcccccCCCcEEEEeccccccccCCCcchHHHHHH-HHHhcCCCeEEEEe
Q 043031 236 FLTDIKDFETNEGEVVAVYSPVHLSHMIRKPNCLETFLT-ELRKINPCVMVVIE 288 (424)
Q Consensus 236 ~~~~l~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~-~ir~L~P~vvvl~E 288 (424)
+..++...++..=+|.+...++|+.+ ...+++ ..+.|+|.-.++.+
T Consensus 77 ---d~~~~~~~~~~~D~v~~~~~~~~~~~----~~~~l~~~~~~L~~gG~l~~~ 123 (241)
T PRK08317 77 ---DADGLPFPDGSFDAVRSDRVLQHLED----PARALAEIARVLRPGGRVVVL 123 (241)
T ss_pred ---ccccCCCCCCCceEEEEechhhccCC----HHHHHHHHHHHhcCCcEEEEE
Confidence 22222222222222333345677754 233444 44677897765543
No 21
>PRK05785 hypothetical protein; Provisional
Probab=89.45 E-value=8.9 Score=36.62 Aligned_cols=94 Identities=12% Similarity=0.075 Sum_probs=53.9
Q ss_pred eeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEEecCCCcccc
Q 043031 165 KIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFNISFLTDIKDFE 244 (424)
Q Consensus 165 ~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~v~~~~l~~l~ 244 (424)
.-.|+|+|.|.|.- ...|+.+. . .++|| |+. +.+.++....+ .+ + + ..+.+++.
T Consensus 52 ~~~VLDlGcGtG~~----~~~l~~~~---~--~~v~g-vD~--S~~Ml~~a~~~---------~~--~--~-~~d~~~lp 105 (226)
T PRK05785 52 PKKVLDVAAGKGEL----SYHFKKVF---K--YYVVA-LDY--AENMLKMNLVA---------DD--K--V-VGSFEALP 105 (226)
T ss_pred CCeEEEEcCCCCHH----HHHHHHhc---C--CEEEE-ECC--CHHHHHHHHhc---------cc--e--E-EechhhCC
Confidence 34799999999943 34455553 1 37999 985 66666654332 11 1 2 12334445
Q ss_pred cCCCcEEEEeccccccccCCCcchHHHHHHHH-HhcCCCeEEEEee
Q 043031 245 TNEGEVVAVYSPVHLSHMIRKPNCLETFLTEL-RKINPCVMVVIEV 289 (424)
Q Consensus 245 ~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvl~E~ 289 (424)
..++..=+|-+.+.|||+.+ .+.+|+.+ |-|+|.+ +++|-
T Consensus 106 ~~d~sfD~v~~~~~l~~~~d----~~~~l~e~~RvLkp~~-~ile~ 146 (226)
T PRK05785 106 FRDKSFDVVMSSFALHASDN----IEKVIAEFTRVSRKQV-GFIAM 146 (226)
T ss_pred CCCCCEEEEEecChhhccCC----HHHHHHHHHHHhcCce-EEEEe
Confidence 54554444555567888754 34556555 5678854 34443
No 22
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=89.22 E-value=1.1 Score=43.97 Aligned_cols=53 Identities=17% Similarity=0.191 Sum_probs=37.6
Q ss_pred CCCeeEEEeccCCCCCChHHHHHHHHhcCC--CCCcceEEEEEeCCCCCHHHHHHHHHH
Q 043031 162 SAKKIHIIDLATRTGSHCPAIMQALATRQG--CPPELLKITMVVGTTPSKQKFEEIENR 218 (424)
Q Consensus 162 g~~~VHIIDf~i~~G~QWp~LiqaLa~R~g--gpP~~LRIT~~i~~~~~~~~l~~tg~r 218 (424)
..+.++|.|.|.+.|--.-+|--.|++.-. ..+ ..+||| ++. +...++.+.+.
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~-~~~I~g-~Di--s~~~L~~Ar~~ 151 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREP-DVKILA-TDI--DLKALEKARAG 151 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCC-CeEEEE-EEC--CHHHHHHHHcC
Confidence 345699999999999887777666665421 123 489999 875 77777766654
No 23
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=88.68 E-value=1 Score=37.10 Aligned_cols=104 Identities=22% Similarity=0.211 Sum_probs=62.3
Q ss_pred EEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEEecCCC-ccccc
Q 043031 167 HIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFNISFLTDI-KDFET 245 (424)
Q Consensus 167 HIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~v~~~~l-~~l~~ 245 (424)
+|+|+|.|.|. +...|+.+. | ..++|| |+. +...++.+.++..+.... -..+|.. .++ .+...
T Consensus 4 ~vLDlGcG~G~----~~~~l~~~~---~-~~~v~g-vD~--s~~~~~~a~~~~~~~~~~--~~i~~~~---~d~~~~~~~ 67 (112)
T PF12847_consen 4 RVLDLGCGTGR----LSIALARLF---P-GARVVG-VDI--SPEMLEIARERAAEEGLS--DRITFVQ---GDAEFDPDF 67 (112)
T ss_dssp EEEEETTTTSH----HHHHHHHHH---T-TSEEEE-EES--SHHHHHHHHHHHHHTTTT--TTEEEEE---SCCHGGTTT
T ss_pred EEEEEcCcCCH----HHHHHHhcC---C-CCEEEE-EeC--CHHHHHHHHHHHHhcCCC--CCeEEEE---CccccCccc
Confidence 68999999885 444455431 2 268999 985 778888888777443333 3333333 233 11222
Q ss_pred C-CCcEEEEeccccccccCCCcchHHHHHHHH-HhcCCCeEEEEe
Q 043031 246 N-EGEVVAVYSPVHLSHMIRKPNCLETFLTEL-RKINPCVMVVIE 288 (424)
Q Consensus 246 ~-~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvl~E 288 (424)
. +=++++.+. +.+|++... ..+..+|+.+ +.|+|.-.++++
T Consensus 68 ~~~~D~v~~~~-~~~~~~~~~-~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 68 LEPFDLVICSG-FTLHFLLPL-DERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp SSCEEEEEECS-GSGGGCCHH-HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCCEEEECC-Cccccccch-hHHHHHHHHHHHhcCCCcEEEEE
Confidence 1 123555555 566766644 4456777766 678998877765
No 24
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=88.53 E-value=5.4 Score=40.68 Aligned_cols=112 Identities=13% Similarity=0.175 Sum_probs=69.1
Q ss_pred CeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhC---CCceEEEEE--ecC
Q 043031 164 KKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETI---NLPFPFNIS--FLT 238 (424)
Q Consensus 164 ~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~l---gvpFeF~~v--~~~ 238 (424)
+..+|+|++.|.|.= |..-.. +.+. ++.| |+. +...++++.+|..+.-+.. ...+.|... ..+
T Consensus 62 ~~~~VLDl~CGkGGD---L~Kw~~----~~i~--~~vg-~Di--s~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D 129 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGD---LQKWQK----AKIK--HYVG-IDI--SEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAAD 129 (331)
T ss_dssp TT-EEEEET-TTTTT---HHHHHH----TT-S--EEEE-EES---HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEEST
T ss_pred CCCeEEEecCCCchh---HHHHHh----cCCC--EEEE-EeC--CHHHHHHHHHHHHHhccccccccccccchhheeccc
Confidence 679999999999862 222222 2233 5788 774 8889999999986655432 233444433 223
Q ss_pred CCcc-----cccCCCcEEEEeccccccccCCCcchHHHHHHHH-HhcCCCeEEEE
Q 043031 239 DIKD-----FETNEGEVVAVYSPVHLSHMIRKPNCLETFLTEL-RKINPCVMVVI 287 (424)
Q Consensus 239 ~l~~-----l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvl~ 287 (424)
.... +.-..+..=+|+|+|.||+.-.+......+|+.| ..|+|.-+.++
T Consensus 130 ~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIg 184 (331)
T PF03291_consen 130 CFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIG 184 (331)
T ss_dssp TCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred cccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 2222 2222346779999999999988777777788777 77899765554
No 25
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=87.92 E-value=7.6 Score=36.12 Aligned_cols=111 Identities=17% Similarity=0.209 Sum_probs=61.6
Q ss_pred HHHHHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCc-eE
Q 043031 153 IQAVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLP-FP 231 (424)
Q Consensus 153 NqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvp-Fe 231 (424)
++.+++.+...+.-.|+|+|.|.|. +...||.+ | .+||| |+. +...++.+.++. +..|++ .+
T Consensus 19 ~~~l~~~l~~~~~~~vLDiGcG~G~----~a~~La~~--g----~~V~g-vD~--S~~~i~~a~~~~----~~~~~~~v~ 81 (197)
T PRK11207 19 HSEVLEAVKVVKPGKTLDLGCGNGR----NSLYLAAN--G----FDVTA-WDK--NPMSIANLERIK----AAENLDNLH 81 (197)
T ss_pred hHHHHHhcccCCCCcEEEECCCCCH----HHHHHHHC--C----CEEEE-EeC--CHHHHHHHHHHH----HHcCCCcce
Confidence 3455555544444689999999997 33446655 2 37999 874 666666554432 334543 33
Q ss_pred EEEEecCCCcccccC-CCcEEEEeccccccccCCCcchHHHHHHHH-HhcCCCeEEEE
Q 043031 232 FNISFLTDIKDFETN-EGEVVAVYSPVHLSHMIRKPNCLETFLTEL-RKINPCVMVVI 287 (424)
Q Consensus 232 F~~v~~~~l~~l~~~-~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvl~ 287 (424)
+... ++.++... .=+.++.+. .+|++. ++.+..+++.+ +.|+|.-.+++
T Consensus 82 ~~~~---d~~~~~~~~~fD~I~~~~--~~~~~~--~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 82 TAVV---DLNNLTFDGEYDFILSTV--VLMFLE--AKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred EEec---ChhhCCcCCCcCEEEEec--chhhCC--HHHHHHHHHHHHHHcCCCcEEEE
Confidence 3322 33333221 123444443 357653 34466677655 77799886543
No 26
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=87.91 E-value=19 Score=33.40 Aligned_cols=98 Identities=20% Similarity=0.356 Sum_probs=54.0
Q ss_pred CeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEEecCCCccc
Q 043031 164 KKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFNISFLTDIKDF 243 (424)
Q Consensus 164 ~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~v~~~~l~~l 243 (424)
+..+|+|+|.|.|. +...|+.+ +| ..++|+ ++. +...++.+.+++. . ++ +| +. .++.++
T Consensus 34 ~~~~vLDlG~G~G~----~~~~l~~~--~~--~~~~~~-~D~--~~~~~~~~~~~~~----~-~~--~~--~~-~d~~~~ 92 (240)
T TIGR02072 34 IPASVLDIGCGTGY----LTRALLKR--FP--QAEFIA-LDI--SAGMLAQAKTKLS----E-NV--QF--IC-GDAEKL 92 (240)
T ss_pred CCCeEEEECCCccH----HHHHHHHh--CC--CCcEEE-EeC--hHHHHHHHHHhcC----C-CC--eE--Ee-cchhhC
Confidence 34689999999995 34445544 33 257999 874 5555555554433 1 22 22 21 233333
Q ss_pred ccCCC--cEEEEeccccccccCCCcchHHHHHHHH-HhcCCCeEEEEe
Q 043031 244 ETNEG--EVVAVYSPVHLSHMIRKPNCLETFLTEL-RKINPCVMVVIE 288 (424)
Q Consensus 244 ~~~~~--E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvl~E 288 (424)
...++ ++++ +...+||+.+ ...+|+.+ +.|+|.-+++..
T Consensus 93 ~~~~~~fD~vi--~~~~l~~~~~----~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 93 PLEDSSFDLIV--SNLALQWCDD----LSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred CCCCCceeEEE--EhhhhhhccC----HHHHHHHHHHHcCCCcEEEEE
Confidence 22222 3333 3345777643 34566665 567998766664
No 27
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=87.47 E-value=6.4 Score=34.65 Aligned_cols=103 Identities=25% Similarity=0.349 Sum_probs=60.1
Q ss_pred CCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCc-eEEEEEecCCCc
Q 043031 163 AKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLP-FPFNISFLTDIK 241 (424)
Q Consensus 163 ~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvp-FeF~~v~~~~l~ 241 (424)
.+..+|+|+|.|.|. +...|+.+- +|+ .++|| |+. +...++.+.. .++..|++ .+|..- ++.
T Consensus 2 ~~~~~iLDlGcG~G~----~~~~l~~~~-~~~--~~i~g-vD~--s~~~i~~a~~----~~~~~~~~ni~~~~~---d~~ 64 (152)
T PF13847_consen 2 KSNKKILDLGCGTGR----LLIQLAKEL-NPG--AKIIG-VDI--SEEMIEYAKK----RAKELGLDNIEFIQG---DIE 64 (152)
T ss_dssp TTTSEEEEET-TTSH----HHHHHHHHS-TTT--SEEEE-EES--SHHHHHHHHH----HHHHTTSTTEEEEES---BTT
T ss_pred CCCCEEEEecCcCcH----HHHHHHHhc-CCC--CEEEE-EEC--cHHHHHHhhc----ccccccccccceEEe---ehh
Confidence 356799999999996 444455332 333 47999 885 6665554444 56777887 555554 333
Q ss_pred ccc--cC-CCcEEEEeccccccccCCCcchHHHHHH-HHHhcCCCeEEEEe
Q 043031 242 DFE--TN-EGEVVAVYSPVHLSHMIRKPNCLETFLT-ELRKINPCVMVVIE 288 (424)
Q Consensus 242 ~l~--~~-~~E~laVN~~~~Lh~l~~~~~~~~~~L~-~ir~L~P~vvvl~E 288 (424)
++. +. .=+.+..+.. +||+.+ ...+|+ ..+.|+|..++++.
T Consensus 65 ~l~~~~~~~~D~I~~~~~--l~~~~~----~~~~l~~~~~~lk~~G~~i~~ 109 (152)
T PF13847_consen 65 DLPQELEEKFDIIISNGV--LHHFPD----PEKVLKNIIRLLKPGGILIIS 109 (152)
T ss_dssp CGCGCSSTTEEEEEEEST--GGGTSH----HHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccCCCeeEEEEcCc--hhhccC----HHHHHHHHHHHcCCCcEEEEE
Confidence 333 32 2234444444 477643 334554 56788988766654
No 28
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=87.16 E-value=9.7 Score=35.84 Aligned_cols=100 Identities=21% Similarity=0.208 Sum_probs=58.7
Q ss_pred EEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEEecCCCcccccC
Q 043031 167 HIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFNISFLTDIKDFETN 246 (424)
Q Consensus 167 HIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~v~~~~l~~l~~~ 246 (424)
.|+|+|.|.|..-. .|+.+. |. .++|| |+. +...++.+.+++. ++. +..- ++.+ ...
T Consensus 46 ~VLDiGCG~G~~~~----~L~~~~---~~-~~v~g-iDi--S~~~l~~A~~~~~------~~~--~~~~---d~~~-~~~ 102 (204)
T TIGR03587 46 SILELGANIGMNLA----ALKRLL---PF-KHIYG-VEI--NEYAVEKAKAYLP------NIN--IIQG---SLFD-PFK 102 (204)
T ss_pred cEEEEecCCCHHHH----HHHHhC---CC-CeEEE-EEC--CHHHHHHHHhhCC------CCc--EEEe---eccC-CCC
Confidence 59999999995444 444432 22 57999 874 6777776654421 232 2221 2222 112
Q ss_pred CCcEEEEeccccccccCCCcchHHHHHHHHHhcCCCeEEEEeeeC
Q 043031 247 EGEVVAVYSPVHLSHMIRKPNCLETFLTELRKINPCVMVVIEVES 291 (424)
Q Consensus 247 ~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L~P~vvvl~E~ea 291 (424)
++..=+|-+...|||+. ++.+..+++.+.+..=+.++++|...
T Consensus 103 ~~sfD~V~~~~vL~hl~--p~~~~~~l~el~r~~~~~v~i~e~~~ 145 (204)
T TIGR03587 103 DNFFDLVLTKGVLIHIN--PDNLPTAYRELYRCSNRYILIAEYYN 145 (204)
T ss_pred CCCEEEEEECChhhhCC--HHHHHHHHHHHHhhcCcEEEEEEeeC
Confidence 22222223445578873 45677888888887778888888754
No 29
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=86.11 E-value=11 Score=37.34 Aligned_cols=96 Identities=21% Similarity=0.277 Sum_probs=56.3
Q ss_pred EEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEEecCCCcccccC
Q 043031 167 HIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFNISFLTDIKDFETN 246 (424)
Q Consensus 167 HIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~v~~~~l~~l~~~ 246 (424)
+|+|+|.|.|. +...||.+ | .++|| |+. +...++.+. +.|+..|+++++... ++.+..+.
T Consensus 123 ~vLDlGcG~G~----~~~~la~~-g-----~~V~a-vD~--s~~ai~~~~----~~~~~~~l~v~~~~~---D~~~~~~~ 182 (287)
T PRK12335 123 KALDLGCGQGR----NSLYLALL-G-----FDVTA-VDI--NQQSLENLQ----EIAEKENLNIRTGLY---DINSASIQ 182 (287)
T ss_pred CEEEeCCCCCH----HHHHHHHC-C-----CEEEE-EEC--CHHHHHHHH----HHHHHcCCceEEEEe---chhccccc
Confidence 89999999997 34445654 2 47999 874 555555443 445566776665443 22222221
Q ss_pred -CCcEEEEeccccccccCCCcchHHHHHHHH-HhcCCCeEEE
Q 043031 247 -EGEVVAVYSPVHLSHMIRKPNCLETFLTEL-RKINPCVMVV 286 (424)
Q Consensus 247 -~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvl 286 (424)
.=+.++.+. .||++. ++.+..+++.+ +.|+|.-..+
T Consensus 183 ~~fD~I~~~~--vl~~l~--~~~~~~~l~~~~~~LkpgG~~l 220 (287)
T PRK12335 183 EEYDFILSTV--VLMFLN--RERIPAIIKNMQEHTNPGGYNL 220 (287)
T ss_pred CCccEEEEcc--hhhhCC--HHHHHHHHHHHHHhcCCCcEEE
Confidence 113444443 467764 23466777665 6789977643
No 30
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=86.04 E-value=1.7 Score=34.03 Aligned_cols=93 Identities=24% Similarity=0.328 Sum_probs=53.1
Q ss_pred EeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEEecCCCcccccCCC
Q 043031 169 IDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFNISFLTDIKDFETNEG 248 (424)
Q Consensus 169 IDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~v~~~~l~~l~~~~~ 248 (424)
+|+|.|.|.....|.+ + ++ .++|+ ++. +...++.+.+++ +..+++ +...+..++...++
T Consensus 1 LdiG~G~G~~~~~l~~----~---~~--~~v~~-~D~--~~~~~~~~~~~~----~~~~~~-----~~~~d~~~l~~~~~ 59 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAK----R---GG--ASVTG-IDI--SEEMLEQARKRL----KNEGVS-----FRQGDAEDLPFPDN 59 (95)
T ss_dssp EEET-TTSHHHHHHHH----T---TT--CEEEE-EES---HHHHHHHHHHT----TTSTEE-----EEESBTTSSSS-TT
T ss_pred CEecCcCCHHHHHHHh----c---cC--CEEEE-EeC--CHHHHHHHHhcc----cccCch-----heeehHHhCccccc
Confidence 5788887775555544 3 22 58999 874 565555554443 334444 22235555666666
Q ss_pred cEEEEeccccccccCCCcchHHHHHHHH-HhcCCCeEEE
Q 043031 249 EVVAVYSPVHLSHMIRKPNCLETFLTEL-RKINPCVMVV 286 (424)
Q Consensus 249 E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvl 286 (424)
-.=+|-+...+||+ ...+.+++.+ |-|+|.-..+
T Consensus 60 sfD~v~~~~~~~~~----~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 60 SFDVVFSNSVLHHL----EDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp -EEEEEEESHGGGS----SHHHHHHHHHHHHEEEEEEEE
T ss_pred cccccccccceeec----cCHHHHHHHHHHHcCcCeEEe
Confidence 66566666778888 2345555544 7778876554
No 31
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=85.67 E-value=8.9 Score=36.83 Aligned_cols=110 Identities=16% Similarity=0.281 Sum_probs=62.6
Q ss_pred HHHHHHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceE
Q 043031 152 GIQAVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFP 231 (424)
Q Consensus 152 ANqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFe 231 (424)
-+..+++.+.-.+.-+|+|+|.|.|. +...|+.+. |. .++|| |+. +...++.+.+++. + .+
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~----~~~~la~~~--~~--~~v~g-vD~--s~~~i~~a~~~~~------~--~~ 79 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGN----STELLVERW--PA--ARITG-IDS--SPAMLAEARSRLP------D--CQ 79 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCH----HHHHHHHHC--CC--CEEEE-EEC--CHHHHHHHHHhCC------C--Ce
Confidence 35566776655556789999999883 445666663 32 58999 875 5666655544421 2 23
Q ss_pred EEEEecCCCccccc-CCCcEEEEeccccccccCCCcchHHHHHH-HHHhcCCCeEEEEee
Q 043031 232 FNISFLTDIKDFET-NEGEVVAVYSPVHLSHMIRKPNCLETFLT-ELRKINPCVMVVIEV 289 (424)
Q Consensus 232 F~~v~~~~l~~l~~-~~~E~laVN~~~~Lh~l~~~~~~~~~~L~-~ir~L~P~vvvl~E~ 289 (424)
|... ++.++.. ..=+.++. ...||++.+ ...+|+ ..+.|+|.-.+++..
T Consensus 80 ~~~~---d~~~~~~~~~fD~v~~--~~~l~~~~d----~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 80 FVEA---DIASWQPPQALDLIFA--NASLQWLPD----HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred EEEC---chhccCCCCCccEEEE--ccChhhCCC----HHHHHHHHHHhcCCCcEEEEEC
Confidence 3322 2222211 11124443 445788754 234444 447789988877764
No 32
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=84.98 E-value=17 Score=38.37 Aligned_cols=135 Identities=11% Similarity=0.164 Sum_probs=71.5
Q ss_pred HHHHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEE
Q 043031 154 QAVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFN 233 (424)
Q Consensus 154 qaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~ 233 (424)
..|++.+...+.-+|+|+|.|.|. +...|+.+ + -++|| |+. +...++.... + ....-..+|.
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~----~~~~la~~--~----~~v~g-iD~--s~~~l~~a~~-~----~~~~~~i~~~ 88 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGR----FTGELAKK--A----GQVIA-LDF--IESVIKKNES-I----NGHYKNVKFM 88 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCH----HHHHHHhh--C----CEEEE-EeC--CHHHHHHHHH-H----hccCCceEEE
Confidence 455566654444489999999995 44445554 1 16899 875 5555544321 1 1111122332
Q ss_pred EEecCCCc--ccccCCCcEEEEeccccccccCCCcchHHHHHHHH-HhcCCCeEEEEeeeCCCC--------CCchHHHH
Q 043031 234 ISFLTDIK--DFETNEGEVVAVYSPVHLSHMIRKPNCLETFLTEL-RKINPCVMVVIEVESNDN--------LQTFEDRF 302 (424)
Q Consensus 234 ~v~~~~l~--~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvl~E~ea~~n--------s~~F~~RF 302 (424)
.. ++. ++...++..=+|-|.+.+||+.+ ..+..+|+.+ +.|+|.-.++....+-++ .|++..
T Consensus 89 ~~---d~~~~~~~~~~~~fD~I~~~~~l~~l~~--~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~-- 161 (475)
T PLN02336 89 CA---DVTSPDLNISDGSVDLIFSNWLLMYLSD--KEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYR-- 161 (475)
T ss_pred Ee---cccccccCCCCCCEEEEehhhhHHhCCH--HHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeec--
Confidence 22 221 13333333334445556889854 3356777666 558998877664333322 233321
Q ss_pred HHHHHHHHHHHHh
Q 043031 303 FGTLFHFGALFDC 315 (424)
Q Consensus 303 ~eaL~~YsalFDs 315 (424)
...+|..+|+.
T Consensus 162 --~~~~~~~~f~~ 172 (475)
T PLN02336 162 --EPRFYTKVFKE 172 (475)
T ss_pred --ChHHHHHHHHH
Confidence 24577777765
No 33
>PLN02244 tocopherol O-methyltransferase
Probab=83.91 E-value=26 Score=35.59 Aligned_cols=101 Identities=20% Similarity=0.263 Sum_probs=57.9
Q ss_pred CeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCC--ceEEEEEecCCCc
Q 043031 164 KKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINL--PFPFNISFLTDIK 241 (424)
Q Consensus 164 ~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgv--pFeF~~v~~~~l~ 241 (424)
+.-+|+|+|.|.|. +...|+.+.+ .++|| |+. +...++.+.+ .++..|+ ..+|..- +..
T Consensus 118 ~~~~VLDiGCG~G~----~~~~La~~~g-----~~v~g-vD~--s~~~i~~a~~----~~~~~g~~~~v~~~~~---D~~ 178 (340)
T PLN02244 118 RPKRIVDVGCGIGG----SSRYLARKYG-----ANVKG-ITL--SPVQAARANA----LAAAQGLSDKVSFQVA---DAL 178 (340)
T ss_pred CCCeEEEecCCCCH----HHHHHHHhcC-----CEEEE-EEC--CHHHHHHHHH----HHHhcCCCCceEEEEc---Ccc
Confidence 34579999999985 5556776642 37999 874 5554544433 3344454 3444332 333
Q ss_pred ccccCCCcEEEEeccccccccCCCcchHHHHHH-HHHhcCCCeEEEE
Q 043031 242 DFETNEGEVVAVYSPVHLSHMIRKPNCLETFLT-ELRKINPCVMVVI 287 (424)
Q Consensus 242 ~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~-~ir~L~P~vvvl~ 287 (424)
++...++..=+|-+...+||+.+ ...+|+ ..|-|+|.-.+++
T Consensus 179 ~~~~~~~~FD~V~s~~~~~h~~d----~~~~l~e~~rvLkpGG~lvi 221 (340)
T PLN02244 179 NQPFEDGQFDLVWSMESGEHMPD----KRKFVQELARVAAPGGRIII 221 (340)
T ss_pred cCCCCCCCccEEEECCchhccCC----HHHHHHHHHHHcCCCcEEEE
Confidence 33333443334445567888864 345554 4578899654443
No 34
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=82.94 E-value=33 Score=30.76 Aligned_cols=81 Identities=16% Similarity=0.150 Sum_probs=42.3
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEEecCCCcccccCCCcEEEEeccccccccCCCcchHHHHHHHH-Hh
Q 043031 200 TMVVGTTPSKQKFEEIENRLANFAETINLPFPFNISFLTDIKDFETNEGEVVAVYSPVHLSHMIRKPNCLETFLTEL-RK 278 (424)
Q Consensus 200 T~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~v~~~~l~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~ 278 (424)
|| |+. +.+.++.+.++...-+....-..+|..- +..++...++..=+|-+.+.||++.+ ...+|+.+ |-
T Consensus 1 ~G-vD~--S~~ML~~A~~~~~~~~~~~~~~i~~~~~---d~~~lp~~~~~fD~v~~~~~l~~~~d----~~~~l~ei~rv 70 (160)
T PLN02232 1 MG-LDF--SSEQLAVAATRQSLKARSCYKCIEWIEG---DAIDLPFDDCEFDAVTMGYGLRNVVD----RLRAMKEMYRV 70 (160)
T ss_pred Ce-EcC--CHHHHHHHHHhhhcccccCCCceEEEEe---chhhCCCCCCCeeEEEecchhhcCCC----HHHHHHHHHHH
Confidence 56 664 7777877766654322211112344322 33334444433333345577888853 45566555 77
Q ss_pred cCCCeEE-EEeee
Q 043031 279 INPCVMV-VIEVE 290 (424)
Q Consensus 279 L~P~vvv-l~E~e 290 (424)
|+|.-.+ +.|-.
T Consensus 71 LkpGG~l~i~d~~ 83 (160)
T PLN02232 71 LKPGSRVSILDFN 83 (160)
T ss_pred cCcCeEEEEEECC
Confidence 8997444 44444
No 35
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=81.81 E-value=19 Score=33.98 Aligned_cols=112 Identities=21% Similarity=0.277 Sum_probs=67.8
Q ss_pred HHHHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEE
Q 043031 154 QAVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFN 233 (424)
Q Consensus 154 qaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~ 233 (424)
..+++|+.--+.-.++|+|.|.|.= ---||++ | ..+|+ ++. +...+ ++|.+.|+.-|++.+..
T Consensus 20 s~v~~a~~~~~~g~~LDlgcG~GRN----alyLA~~--G----~~VtA-vD~--s~~al----~~l~~~a~~~~l~i~~~ 82 (192)
T PF03848_consen 20 SEVLEAVPLLKPGKALDLGCGEGRN----ALYLASQ--G----FDVTA-VDI--SPVAL----EKLQRLAEEEGLDIRTR 82 (192)
T ss_dssp HHHHHHCTTS-SSEEEEES-TTSHH----HHHHHHT--T-----EEEE-EES--SHHHH----HHHHHHHHHTT-TEEEE
T ss_pred HHHHHHHhhcCCCcEEEcCCCCcHH----HHHHHHC--C----CeEEE-EEC--CHHHH----HHHHHHHhhcCceeEEE
Confidence 4467777655566889999998841 1236666 2 67999 874 55444 34677899999997766
Q ss_pred EEecCCCcccccCCCcEEEEeccccccccCCCcchHHHHHHHHH-hcCCCeEEEEe
Q 043031 234 ISFLTDIKDFETNEGEVVAVYSPVHLSHMIRKPNCLETFLTELR-KINPCVMVVIE 288 (424)
Q Consensus 234 ~v~~~~l~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir-~L~P~vvvl~E 288 (424)
.. ++.+..+. ++.=+|.+...+++|. +..++.+++.++ .++|.-+.+.+
T Consensus 83 ~~---Dl~~~~~~-~~yD~I~st~v~~fL~--~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 83 VA---DLNDFDFP-EEYDFIVSTVVFMFLQ--RELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp E----BGCCBS-T-TTEEEEEEESSGGGS---GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred Ee---cchhcccc-CCcCEEEEEEEeccCC--HHHHHHHHHHHHhhcCCcEEEEEE
Confidence 65 44443442 3333455555677775 355778888775 57997655553
No 36
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=80.51 E-value=44 Score=30.18 Aligned_cols=106 Identities=14% Similarity=0.166 Sum_probs=59.3
Q ss_pred EEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEEecCCCcccccC
Q 043031 167 HIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFNISFLTDIKDFETN 246 (424)
Q Consensus 167 HIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~v~~~~l~~l~~~ 246 (424)
.|+|+|.|.|. +...++.+ ++ ++|+ ++. +...++.+.+++. ..++..+|..- ++.+....
T Consensus 22 ~vLdlG~G~G~----~~~~l~~~--~~----~v~~-vD~--s~~~~~~a~~~~~----~~~~~~~~~~~---d~~~~~~~ 81 (179)
T TIGR00537 22 DVLEIGAGTGL----VAIRLKGK--GK----CILT-TDI--NPFAVKELRENAK----LNNVGLDVVMT---DLFKGVRG 81 (179)
T ss_pred eEEEeCCChhH----HHHHHHhc--CC----EEEE-EEC--CHHHHHHHHHHHH----HcCCceEEEEc---ccccccCC
Confidence 49999999994 55566655 32 6999 874 6677777766664 33444444322 22221111
Q ss_pred CCcEEEEeccccccccCCCc-----------------chHHHHHHHH-HhcCCCeEEEEeeeCCCC
Q 043031 247 EGEVVAVYSPVHLSHMIRKP-----------------NCLETFLTEL-RKINPCVMVVIEVESNDN 294 (424)
Q Consensus 247 ~~E~laVN~~~~Lh~l~~~~-----------------~~~~~~L~~i-r~L~P~vvvl~E~ea~~n 294 (424)
.=+.++.|.++ |+..+.. ...+.+|+.+ +-|+|.-.+++......+
T Consensus 82 ~fD~Vi~n~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~ 145 (179)
T TIGR00537 82 KFDVILFNPPY--LPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNG 145 (179)
T ss_pred cccEEEECCCC--CCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCC
Confidence 23466677664 3332210 0134566655 678997766665555444
No 37
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=80.45 E-value=33 Score=35.12 Aligned_cols=118 Identities=18% Similarity=0.258 Sum_probs=68.7
Q ss_pred HHHHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEE
Q 043031 154 QAVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFN 233 (424)
Q Consensus 154 qaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~ 233 (424)
..+++.+.....=+|+|+|.|.|. +-..++.+ + | ..++|+ |+. +...++.+.+++.. .++..++.
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~G~----ls~~la~~--~-p-~~~v~~-vDi--s~~Al~~A~~nl~~----n~l~~~~~ 250 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGAGV----LSAVLARH--S-P-KIRLTL-SDV--SAAALESSRATLAA----NGLEGEVF 250 (342)
T ss_pred HHHHHhccccCCCeEEEeccCcCH----HHHHHHHh--C-C-CCEEEE-EEC--CHHHHHHHHHHHHH----cCCCCEEE
Confidence 444555543222369999999997 44556655 2 3 268999 884 77778777766543 45655553
Q ss_pred EEecCCCcccccCCCcEEEEeccccccccCCC-cchHHHHHHH-HHhcCCCeEEEEeeeC
Q 043031 234 ISFLTDIKDFETNEGEVVAVYSPVHLSHMIRK-PNCLETFLTE-LRKINPCVMVVIEVES 291 (424)
Q Consensus 234 ~v~~~~l~~l~~~~~E~laVN~~~~Lh~l~~~-~~~~~~~L~~-ir~L~P~vvvl~E~ea 291 (424)
.. +-..++ -.+=+.++.|-+| |.-... ......+++. .+.|+|.-...+..+.
T Consensus 251 ~~--D~~~~~-~~~fDlIvsNPPF--H~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 251 AS--NVFSDI-KGRFDMIISNPPF--HDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred Ec--cccccc-CCCccEEEECCCc--cCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 32 111112 1223578888775 543322 2334566655 4678998777666554
No 38
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=79.83 E-value=10 Score=37.45 Aligned_cols=139 Identities=17% Similarity=0.229 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHhhhc----CCCeeEEEeccCCCCC-ChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHH
Q 043031 147 VTVFAGIQAVIENVS----SAKKIHIIDLATRTGS-HCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLAN 221 (424)
Q Consensus 147 fa~~tANqaIleA~~----g~~~VHIIDf~i~~G~-QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~ 221 (424)
-+++++-..||+.++ +-+--+|+|||-|-|. =|.. .+.+ + ....+|+ |+. +...+ +.+++|.+
T Consensus 12 p~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa-~~~~------~-~~~~~~~-vd~--s~~~~-~l~~~l~~ 79 (274)
T PF09243_consen 12 PATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAA-REVW------P-SLKEYTC-VDR--SPEML-ELAKRLLR 79 (274)
T ss_pred hHHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHH-HHHh------c-Cceeeee-ecC--CHHHH-HHHHHHHh
Confidence 356677788887775 3455699999999884 3322 1111 1 2468999 874 44444 56666654
Q ss_pred HHHhCCCceEEEEEecCCCcccccCCCcEEEEeccccccccCCCcchHHHHHHHH-HhcCCCeEEEEeeeCCCCCCchHH
Q 043031 222 FAETINLPFPFNISFLTDIKDFETNEGEVVAVYSPVHLSHMIRKPNCLETFLTEL-RKINPCVMVVIEVESNDNLQTFED 300 (424)
Q Consensus 222 fA~~lgvpFeF~~v~~~~l~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvl~E~ea~~ns~~F~~ 300 (424)
-.....- .+.......+. ..+.+.+.|++. +.|-.|.+ ..+..+++.+ ..++| ++|++|+....+ -..+.
T Consensus 80 ~~~~~~~-~~~~~~~~~~~--~~~~~~DLvi~s--~~L~EL~~--~~r~~lv~~LW~~~~~-~LVlVEpGt~~G-f~~i~ 150 (274)
T PF09243_consen 80 AGPNNRN-AEWRRVLYRDF--LPFPPDDLVIAS--YVLNELPS--AARAELVRSLWNKTAP-VLVLVEPGTPAG-FRRIA 150 (274)
T ss_pred ccccccc-chhhhhhhccc--ccCCCCcEEEEe--hhhhcCCc--hHHHHHHHHHHHhccC-cEEEEcCCChHH-HHHHH
Confidence 3221110 01111100011 233333344333 23445544 5677888888 44555 888888765444 34555
Q ss_pred HHHHHH
Q 043031 301 RFFGTL 306 (424)
Q Consensus 301 RF~eaL 306 (424)
+.++.|
T Consensus 151 ~aR~~l 156 (274)
T PF09243_consen 151 EARDQL 156 (274)
T ss_pred HHHHHH
Confidence 555555
No 39
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=79.83 E-value=6.1 Score=38.53 Aligned_cols=100 Identities=17% Similarity=0.255 Sum_probs=66.3
Q ss_pred CeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEEecCCCccc
Q 043031 164 KKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFNISFLTDIKDF 243 (424)
Q Consensus 164 ~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~v~~~~l~~l 243 (424)
...-|.|+|.|-| .|-+.||+. | ..+|| |+. +...++.+. ..|..-|+..+|.....+++...
T Consensus 59 ~g~~vLDvGCGgG----~Lse~mAr~--G----a~Vtg-iD~--se~~I~~Ak----~ha~e~gv~i~y~~~~~edl~~~ 121 (243)
T COG2227 59 PGLRVLDVGCGGG----ILSEPLARL--G----ASVTG-IDA--SEKPIEVAK----LHALESGVNIDYRQATVEDLASA 121 (243)
T ss_pred CCCeEEEecCCcc----HhhHHHHHC--C----CeeEE-ecC--ChHHHHHHH----HhhhhccccccchhhhHHHHHhc
Confidence 4567999999988 788888866 3 47999 984 555555443 34667788888888866554332
Q ss_pred ccCCCcEEEEeccccccccCCCcchHHHHHHHH-HhcCCCeEEEE
Q 043031 244 ETNEGEVVAVYSPVHLSHMIRKPNCLETFLTEL-RKINPCVMVVI 287 (424)
Q Consensus 244 ~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvl~ 287 (424)
+ +-.=||-|+=-|+|+.+ -+.|++.. +-++|.-+++.
T Consensus 122 ~---~~FDvV~cmEVlEHv~d----p~~~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 122 G---GQFDVVTCMEVLEHVPD----PESFLRACAKLVKPGGILFL 159 (243)
T ss_pred C---CCccEEEEhhHHHccCC----HHHHHHHHHHHcCCCcEEEE
Confidence 2 33346667777999865 23466654 66699755543
No 40
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=77.41 E-value=68 Score=30.57 Aligned_cols=107 Identities=19% Similarity=0.237 Sum_probs=58.9
Q ss_pred HHHHHHHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCce
Q 043031 151 AGIQAVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPF 230 (424)
Q Consensus 151 tANqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpF 230 (424)
..-+.+++.+...+.-+|+|+|.|.|. +.+.|+.+ + -++|| ++. +...++.+.++.. ..
T Consensus 29 ~~a~~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~-~-----~~v~~-~D~--s~~~l~~a~~~~~--------~~ 87 (251)
T PRK10258 29 QSADALLAMLPQRKFTHVLDAGCGPGW----MSRYWRER-G-----SQVTA-LDL--SPPMLAQARQKDA--------AD 87 (251)
T ss_pred HHHHHHHHhcCccCCCeEEEeeCCCCH----HHHHHHHc-C-----CeEEE-EEC--CHHHHHHHHhhCC--------CC
Confidence 344556666654444579999999993 55666654 2 37899 875 5555555444321 11
Q ss_pred EEEEEecCCCcccccCCC--cEEEEeccccccccCCCcchHHHHHHH-HHhcCCCeEEEE
Q 043031 231 PFNISFLTDIKDFETNEG--EVVAVYSPVHLSHMIRKPNCLETFLTE-LRKINPCVMVVI 287 (424)
Q Consensus 231 eF~~v~~~~l~~l~~~~~--E~laVN~~~~Lh~l~~~~~~~~~~L~~-ir~L~P~vvvl~ 287 (424)
.|. ..+++++...++ +.|+ +.+.+|+..+ ...+|+. .+-|+|.-.++.
T Consensus 88 ~~~---~~d~~~~~~~~~~fD~V~--s~~~l~~~~d----~~~~l~~~~~~Lk~gG~l~~ 138 (251)
T PRK10258 88 HYL---AGDIESLPLATATFDLAW--SNLAVQWCGN----LSTALRELYRVVRPGGVVAF 138 (251)
T ss_pred CEE---EcCcccCcCCCCcEEEEE--ECchhhhcCC----HHHHHHHHHHHcCCCeEEEE
Confidence 221 224444333333 3443 3445666543 3455554 467899755554
No 41
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=76.40 E-value=32 Score=35.76 Aligned_cols=123 Identities=15% Similarity=0.147 Sum_probs=67.2
Q ss_pred HHHHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEE
Q 043031 154 QAVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFN 233 (424)
Q Consensus 154 qaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~ 233 (424)
..+++.+.....=+|+|+|.|.|. +--.++.+ + |. .+||+ |+. +...++.+.+++......-.-.++|.
T Consensus 218 rllL~~lp~~~~~~VLDLGCGtGv----i~i~la~~--~-P~-~~V~~-vD~--S~~Av~~A~~N~~~n~~~~~~~v~~~ 286 (378)
T PRK15001 218 RFFMQHLPENLEGEIVDLGCGNGV----IGLTLLDK--N-PQ-AKVVF-VDE--SPMAVASSRLNVETNMPEALDRCEFM 286 (378)
T ss_pred HHHHHhCCcccCCeEEEEeccccH----HHHHHHHh--C-CC-CEEEE-EEC--CHHHHHHHHHHHHHcCcccCceEEEE
Confidence 445555532222279999999997 44456665 2 43 79999 884 67777777766643321100123333
Q ss_pred EEecCCCcccccCCCcEEEEeccccccccCCCcchHHHHHH-HHHhcCCCeEEEEeee
Q 043031 234 ISFLTDIKDFETNEGEVVAVYSPVHLSHMIRKPNCLETFLT-ELRKINPCVMVVIEVE 290 (424)
Q Consensus 234 ~v~~~~l~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~-~ir~L~P~vvvl~E~e 290 (424)
..+.+.++.-..=+.|+.|-+|.-.+-..+ .....+++ .-+.|+|.-.+.++.+
T Consensus 287 --~~D~l~~~~~~~fDlIlsNPPfh~~~~~~~-~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 287 --INNALSGVEPFRFNAVLCNPPFHQQHALTD-NVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred --EccccccCCCCCEEEEEECcCcccCccCCH-HHHHHHHHHHHHhcccCCEEEEEEe
Confidence 222222221112257777888754332221 22334444 5568899887777753
No 42
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=75.92 E-value=53 Score=33.37 Aligned_cols=145 Identities=11% Similarity=0.176 Sum_probs=87.4
Q ss_pred HHHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCc-eEEE
Q 043031 155 AVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLP-FPFN 233 (424)
Q Consensus 155 aIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvp-FeF~ 233 (424)
.|..++. ....|||||.|.|..=..|+++|... +.| .+-.+ |+- |.+.|+++.++|. .-..| .+++
T Consensus 69 ~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~--~~~--~~Y~p-lDI--S~~~L~~a~~~L~----~~~~p~l~v~ 135 (319)
T TIGR03439 69 DIAASIP--SGSMLVELGSGNLRKVGILLEALERQ--KKS--VDYYA-LDV--SRSELQRTLAELP----LGNFSHVRCA 135 (319)
T ss_pred HHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhc--CCC--ceEEE-EEC--CHHHHHHHHHhhh----hccCCCeEEE
Confidence 4444453 22479999999999999999999743 333 46788 874 8999999999987 12345 7788
Q ss_pred EEecCCCcc----ccc--CCCcE-EEEeccccccccCCCcchHHHHHHHHHh--cCCCeEEEEeeeCC---------CCC
Q 043031 234 ISFLTDIKD----FET--NEGEV-VAVYSPVHLSHMIRKPNCLETFLTELRK--INPCVMVVIEVESN---------DNL 295 (424)
Q Consensus 234 ~v~~~~l~~----l~~--~~~E~-laVN~~~~Lh~l~~~~~~~~~~L~~ir~--L~P~vvvl~E~ea~---------~ns 295 (424)
+|.. +-.+ +.- .++.. ++.-.-..+.++ ++.....||+.+++ |+|.-..++-.|.. +|.
T Consensus 136 ~l~g-dy~~~l~~l~~~~~~~~~r~~~flGSsiGNf--~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d 212 (319)
T TIGR03439 136 GLLG-TYDDGLAWLKRPENRSRPTTILWLGSSIGNF--SRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYND 212 (319)
T ss_pred EEEe-cHHHHHhhcccccccCCccEEEEeCccccCC--CHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcC
Confidence 8754 2222 211 11222 222222233333 23445689999987 89976666655543 232
Q ss_pred C-chHHH-HHHHHHHHHHHHHh
Q 043031 296 Q-TFEDR-FFGTLFHFGALFDC 315 (424)
Q Consensus 296 ~-~F~~R-F~eaL~~YsalFDs 315 (424)
+ ....+ ..+.|.+--..+++
T Consensus 213 ~~gvTa~FnlN~L~~~Nr~Lg~ 234 (319)
T TIGR03439 213 PGGVTRRFVLNGLVHANEILGS 234 (319)
T ss_pred CcchhHHHHHHHHHHHHHHhCc
Confidence 2 23333 35666666666654
No 43
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=75.57 E-value=39 Score=31.59 Aligned_cols=116 Identities=19% Similarity=0.193 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHhhhc--CCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 043031 147 VTVFAGIQAVIENVS--SAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAE 224 (424)
Q Consensus 147 fa~~tANqaIleA~~--g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~ 224 (424)
.++-...+.+++.+. ..+.-+|+|+|.|.|. +...|+.+ . .++|| |+. +...++.+.+++..
T Consensus 36 ~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~----~~~~la~~----~--~~v~g-vD~--s~~~i~~a~~~~~~--- 99 (219)
T TIGR02021 36 EGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGL----LSIELAKR----G--AIVKA-VDI--SEQMVQMARNRAQG--- 99 (219)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCH----HHHHHHHC----C--CEEEE-EEC--CHHHHHHHHHHHHh---
Confidence 445555667777665 2456789999999995 55666654 1 37999 874 66666666666532
Q ss_pred hCCC--ceEEEEEecCCCcccccCCCcEEEEeccccccccCCCcchHHHHHHHHHh-cCCCeEEEE
Q 043031 225 TINL--PFPFNISFLTDIKDFETNEGEVVAVYSPVHLSHMIRKPNCLETFLTELRK-INPCVMVVI 287 (424)
Q Consensus 225 ~lgv--pFeF~~v~~~~l~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~-L~P~vvvl~ 287 (424)
.++ ..+|... ++.++. ..=++++. ...++|+.. .....+++.+.+ ++|.+++..
T Consensus 100 -~~~~~~i~~~~~---d~~~~~-~~fD~ii~--~~~l~~~~~--~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 100 -RDVAGNVEFEVN---DLLSLC-GEFDIVVC--MDVLIHYPA--SDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred -cCCCCceEEEEC---ChhhCC-CCcCEEEE--hhHHHhCCH--HHHHHHHHHHHHHhCCCEEEEE
Confidence 233 3444433 232222 22233333 233566532 235566666654 566655543
No 44
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=73.69 E-value=37 Score=34.40 Aligned_cols=104 Identities=15% Similarity=0.183 Sum_probs=61.1
Q ss_pred CeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHH-hC-CCceEEEEEecCCCc
Q 043031 164 KKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAE-TI-NLPFPFNISFLTDIK 241 (424)
Q Consensus 164 ~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~-~l-gvpFeF~~v~~~~l~ 241 (424)
+.-.|+|+|.|.|. +...|+.+ | .+||| |+. +...++.+.++..+.-. .. +...+|... ++.
T Consensus 144 ~~~~VLDlGcGtG~----~a~~la~~-g-----~~V~g-vD~--S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~---Dl~ 207 (315)
T PLN02585 144 AGVTVCDAGCGTGS----LAIPLALE-G-----AIVSA-SDI--SAAMVAEAERRAKEALAALPPEVLPKFEAN---DLE 207 (315)
T ss_pred CCCEEEEecCCCCH----HHHHHHHC-C-----CEEEE-EEC--CHHHHHHHHHHHHhcccccccccceEEEEc---chh
Confidence 45689999999887 44556654 2 37999 885 77777777766533210 01 233455443 333
Q ss_pred ccccCCCcEEEEeccccccccCCCcchHHHHHHHHHhcCCCeEEEEe
Q 043031 242 DFETNEGEVVAVYSPVHLSHMIRKPNCLETFLTELRKINPCVMVVIE 288 (424)
Q Consensus 242 ~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L~P~vvvl~E 288 (424)
++.-.- + +|| |...|+|+.+ +....+++.++++.|..+++.-
T Consensus 208 ~l~~~f-D-~Vv-~~~vL~H~p~--~~~~~ll~~l~~l~~g~liIs~ 249 (315)
T PLN02585 208 SLSGKY-D-TVT-CLDVLIHYPQ--DKADGMIAHLASLAEKRLIISF 249 (315)
T ss_pred hcCCCc-C-EEE-EcCEEEecCH--HHHHHHHHHHHhhcCCEEEEEe
Confidence 221111 2 333 4455677654 3355788888888888887743
No 45
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=72.67 E-value=35 Score=32.81 Aligned_cols=112 Identities=11% Similarity=0.125 Sum_probs=61.2
Q ss_pred HHHHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEE
Q 043031 154 QAVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFN 233 (424)
Q Consensus 154 qaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~ 233 (424)
..|++.+. .+.-+|+|+|.|.|. +...|+.+ | .++|| |+. +...++.+.+++ +..|+.-...
T Consensus 35 ~~~l~~l~-~~~~~vLDiGcG~G~----~a~~la~~--g----~~v~~-vD~--s~~~l~~a~~~~----~~~g~~~~v~ 96 (255)
T PRK11036 35 DRLLAELP-PRPLRVLDAGGGEGQ----TAIKLAEL--G----HQVIL-CDL--SAEMIQRAKQAA----EAKGVSDNMQ 96 (255)
T ss_pred HHHHHhcC-CCCCEEEEeCCCchH----HHHHHHHc--C----CEEEE-EEC--CHHHHHHHHHHH----HhcCCccceE
Confidence 34666665 334699999999993 55666665 2 37899 874 667777666554 3345432222
Q ss_pred EEecCCCcccc-cCCCcEEEEeccccccccCCCcchHHHHHHHHHhcCCCeEEEE
Q 043031 234 ISFLTDIKDFE-TNEGEVVAVYSPVHLSHMIRKPNCLETFLTELRKINPCVMVVI 287 (424)
Q Consensus 234 ~v~~~~l~~l~-~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L~P~vvvl~ 287 (424)
.+. .+..++. ..++..=+|-|...|||+.+ +...+-...+-|+|.-.+++
T Consensus 97 ~~~-~d~~~l~~~~~~~fD~V~~~~vl~~~~~---~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 97 FIH-CAAQDIAQHLETPVDLILFHAVLEWVAD---PKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred EEE-cCHHHHhhhcCCCCCEEEehhHHHhhCC---HHHHHHHHHHHcCCCeEEEE
Confidence 222 1222221 11222212224455788743 23333344577899877765
No 46
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=72.14 E-value=84 Score=29.76 Aligned_cols=111 Identities=17% Similarity=0.221 Sum_probs=60.1
Q ss_pred HHHHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEE
Q 043031 154 QAVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFN 233 (424)
Q Consensus 154 qaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~ 233 (424)
..++++..=.+.-+|||+|-|.| .+..+|+.+. | .+|+|. .+. .+.++.+.+ .=..+|.
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G----~~~~~l~~~~---P-~l~~~v-~Dl---p~v~~~~~~---------~~rv~~~ 148 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSG----HFAIALARAY---P-NLRATV-FDL---PEVIEQAKE---------ADRVEFV 148 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTS----HHHHHHHHHS---T-TSEEEE-EE----HHHHCCHHH---------TTTEEEE
T ss_pred hhhhccccccCccEEEeccCcch----HHHHHHHHHC---C-CCccee-ecc---Hhhhhcccc---------ccccccc
Confidence 45566665445558999999999 3555666653 5 489998 764 222322222 2233443
Q ss_pred EEecCCC-cccccCCCcEEEEeccccccccCCCcchHHHHHHHH-HhcCCC---eEEEEeeeCCCC
Q 043031 234 ISFLTDI-KDFETNEGEVVAVYSPVHLSHMIRKPNCLETFLTEL-RKINPC---VMVVIEVESNDN 294 (424)
Q Consensus 234 ~v~~~~l-~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~---vvvl~E~ea~~n 294 (424)
+- ++ +++.. .+++.+. .-||...+ .....+|+.+ +.|+|. .++|+|.=.+..
T Consensus 149 ~g---d~f~~~P~--~D~~~l~--~vLh~~~d--~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 149 PG---DFFDPLPV--ADVYLLR--HVLHDWSD--EDCVKILRNAAAALKPGKDGRLLIIEMVLPDD 205 (241)
T ss_dssp ES----TTTCCSS--ESEEEEE--SSGGGS-H--HHHHHHHHHHHHHSEECTTEEEEEEEEEECSS
T ss_pred cc---cHHhhhcc--ccceeee--hhhhhcch--HHHHHHHHHHHHHhCCCCCCeEEEEeeccCCC
Confidence 33 22 22333 3344443 34677654 2344566655 778887 777777665444
No 47
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=70.71 E-value=51 Score=34.21 Aligned_cols=112 Identities=15% Similarity=0.296 Sum_probs=61.0
Q ss_pred HHHHHHHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCce
Q 043031 151 AGIQAVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPF 230 (424)
Q Consensus 151 tANqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpF 230 (424)
..-..|++.+.-.+.=+|+|+|.|.|. +...++.+.| .++|| |+. +...++.+.++.. +++.
T Consensus 154 ~k~~~l~~~l~l~~g~rVLDIGcG~G~----~a~~la~~~g-----~~V~g-iDl--S~~~l~~A~~~~~------~l~v 215 (383)
T PRK11705 154 AKLDLICRKLQLKPGMRVLDIGCGWGG----LARYAAEHYG-----VSVVG-VTI--SAEQQKLAQERCA------GLPV 215 (383)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCccH----HHHHHHHHCC-----CEEEE-EeC--CHHHHHHHHHHhc------cCeE
Confidence 334456665543444589999987774 5555666542 47999 874 6667766666542 3333
Q ss_pred EEEEEecCCCcccccCCCcEEEEeccccccccCCCcchHHHHHHHH-HhcCCCeEEEEe
Q 043031 231 PFNISFLTDIKDFETNEGEVVAVYSPVHLSHMIRKPNCLETFLTEL-RKINPCVMVVIE 288 (424)
Q Consensus 231 eF~~v~~~~l~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvl~E 288 (424)
+|... +..++. ..=+.++.+. .++|+.. ...+.+++.+ +-|+|.-.+++.
T Consensus 216 ~~~~~---D~~~l~-~~fD~Ivs~~--~~ehvg~--~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 216 EIRLQ---DYRDLN-GQFDRIVSVG--MFEHVGP--KNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred EEEEC---chhhcC-CCCCEEEEeC--chhhCCh--HHHHHHHHHHHHHcCCCcEEEEE
Confidence 33322 222221 1112333332 3577642 2244566655 677998766653
No 48
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=69.52 E-value=73 Score=29.18 Aligned_cols=46 Identities=9% Similarity=0.226 Sum_probs=28.2
Q ss_pred HHHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHH
Q 043031 155 AVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEE 214 (424)
Q Consensus 155 aIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~ 214 (424)
.|.+.+... -+|+|+|.|.|. +...|+.+. + .+++| |+. +.+.++.
T Consensus 6 ~i~~~i~~~--~~iLDiGcG~G~----~~~~l~~~~-~----~~~~g-iD~--s~~~i~~ 51 (194)
T TIGR02081 6 SILNLIPPG--SRVLDLGCGDGE----LLALLRDEK-Q----VRGYG-IEI--DQDGVLA 51 (194)
T ss_pred HHHHhcCCC--CEEEEeCCCCCH----HHHHHHhcc-C----CcEEE-EeC--CHHHHHH
Confidence 344444432 379999999995 566776552 1 35689 874 4544444
No 49
>PRK06922 hypothetical protein; Provisional
Probab=69.25 E-value=41 Score=37.62 Aligned_cols=104 Identities=11% Similarity=0.176 Sum_probs=59.5
Q ss_pred eEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEEecCCCcccc-
Q 043031 166 IHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFNISFLTDIKDFE- 244 (424)
Q Consensus 166 VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~v~~~~l~~l~- 244 (424)
-.|+|+|.|.|. +...|+.+ . |. .++|| |+. +...++.+.+++. ..|.++++ +.. +..++.
T Consensus 420 ~rVLDIGCGTG~----ls~~LA~~--~-P~-~kVtG-IDI--S~~MLe~Ararl~----~~g~~ie~--I~g-Da~dLp~ 481 (677)
T PRK06922 420 DTIVDVGAGGGV----MLDMIEEE--T-ED-KRIYG-IDI--SENVIDTLKKKKQ----NEGRSWNV--IKG-DAINLSS 481 (677)
T ss_pred CEEEEeCCCCCH----HHHHHHHh--C-CC-CEEEE-EEC--CHHHHHHHHHHhh----hcCCCeEE--EEc-chHhCcc
Confidence 479999999983 45567765 2 32 69999 985 6767777665532 23455443 221 222232
Q ss_pred -cCCCcEEEEeccccccccCC---------CcchHHHHHHHH-HhcCCCeEEEE
Q 043031 245 -TNEGEVVAVYSPVHLSHMIR---------KPNCLETFLTEL-RKINPCVMVVI 287 (424)
Q Consensus 245 -~~~~E~laVN~~~~Lh~l~~---------~~~~~~~~L~~i-r~L~P~vvvl~ 287 (424)
..++.+=+|-+.+.+|++.+ .......+|+.+ +.|+|.-.+++
T Consensus 482 ~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII 535 (677)
T PRK06922 482 SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIII 535 (677)
T ss_pred ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence 33443333444555787642 112344566554 78999755544
No 50
>PRK14968 putative methyltransferase; Provisional
Probab=68.68 E-value=86 Score=27.91 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=29.1
Q ss_pred eeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHH
Q 043031 165 KIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRL 219 (424)
Q Consensus 165 ~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL 219 (424)
.-.|+|+|.|.|. +...|+.+ + .++|| ++. +...++.+.+++
T Consensus 24 ~~~vLd~G~G~G~----~~~~l~~~-~-----~~v~~-~D~--s~~~~~~a~~~~ 65 (188)
T PRK14968 24 GDRVLEVGTGSGI----VAIVAAKN-G-----KKVVG-VDI--NPYAVECAKCNA 65 (188)
T ss_pred CCEEEEEccccCH----HHHHHHhh-c-----ceEEE-EEC--CHHHHHHHHHHH
Confidence 3469999999998 55556665 1 36899 874 666666665554
No 51
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=65.44 E-value=1e+02 Score=28.92 Aligned_cols=104 Identities=17% Similarity=0.238 Sum_probs=60.5
Q ss_pred eEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEEecCCCcc-cc
Q 043031 166 IHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFNISFLTDIKD-FE 244 (424)
Q Consensus 166 VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~v~~~~l~~-l~ 244 (424)
-.|+|++.|.|. --+.+|+ | +. -++|+ |+. +...++.+.+++ +..|+. ....+. .++.+ +.
T Consensus 55 ~~vLDl~~GsG~---l~l~~ls-r--~a---~~V~~-vE~--~~~a~~~a~~Nl----~~~~~~-~v~~~~-~D~~~~l~ 116 (199)
T PRK10909 55 ARCLDCFAGSGA---LGLEALS-R--YA---AGATL-LEM--DRAVAQQLIKNL----ATLKAG-NARVVN-TNALSFLA 116 (199)
T ss_pred CEEEEcCCCccH---HHHHHHH-c--CC---CEEEE-EEC--CHHHHHHHHHHH----HHhCCC-cEEEEE-chHHHHHh
Confidence 368999999882 2234455 3 22 37999 874 555555554443 334543 222222 23222 21
Q ss_pred -c-CCCcEEEEeccccccccCCCcchHHHHHHHHHh---cCCCeEEEEeeeCCCC
Q 043031 245 -T-NEGEVVAVYSPVHLSHMIRKPNCLETFLTELRK---INPCVMVVIEVESNDN 294 (424)
Q Consensus 245 -~-~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~---L~P~vvvl~E~ea~~n 294 (424)
. .+=+.|++|=+|. .+..+.++..|.. ++|+-++++|.....+
T Consensus 117 ~~~~~fDlV~~DPPy~-------~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~~ 164 (199)
T PRK10909 117 QPGTPHNVVFVDPPFR-------KGLLEETINLLEDNGWLADEALIYVESEVENG 164 (199)
T ss_pred hcCCCceEEEECCCCC-------CChHHHHHHHHHHCCCcCCCcEEEEEecCCCC
Confidence 1 1236788887763 1334567788877 6999999999877654
No 52
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=65.42 E-value=14 Score=26.05 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=25.5
Q ss_pred cEEEEeccccccccCCCcchHHHHHHHHHhcCCCeEEEE
Q 043031 249 EVVAVYSPVHLSHMIRKPNCLETFLTELRKINPCVMVVI 287 (424)
Q Consensus 249 E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L~P~vvvl~ 287 (424)
|.+-|||...--++.. ....+.+++.|+.++|+-++++
T Consensus 1 e~i~v~a~v~~~~fSg-Had~~~L~~~i~~~~p~~vilV 38 (43)
T PF07521_consen 1 EMIPVRARVEQIDFSG-HADREELLEFIEQLNPRKVILV 38 (43)
T ss_dssp CEEE--SEEEESGCSS-S-BHHHHHHHHHHHCSSEEEEE
T ss_pred CEEEeEEEEEEEeecC-CCCHHHHHHHHHhcCCCEEEEe
Confidence 4566776654444443 3457889999999999999987
No 53
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=61.86 E-value=50 Score=34.64 Aligned_cols=157 Identities=13% Similarity=0.125 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHhhhcCCCeeEEEeccCCCC-CChHHHHHHHHh--------cCCCCCcceEEEEEeCCCCCHHHHHHHHH
Q 043031 147 VTVFAGIQAVIENVSSAKKIHIIDLATRTG-SHCPAIMQALAT--------RQGCPPELLKITMVVGTTPSKQKFEEIEN 217 (424)
Q Consensus 147 fa~~tANqaIleA~~g~~~VHIIDf~i~~G-~QWp~LiqaLa~--------R~ggpP~~LRIT~~i~~~~~~~~l~~tg~ 217 (424)
|+-+.||... +...+|-|||.|+||- .-=|..|- |+. +...|+. ...-|.|.+.......=..-.
T Consensus 89 Lt~~LaN~~l----~rG~~v~iiDaDvGQ~ei~pPg~IS-L~~~~s~~~~L~~l~~~~-~~FvG~isP~~~~~~~i~~v~ 162 (398)
T COG1341 89 LTTYLANKLL----ARGRKVAIIDADVGQSEIGPPGFIS-LAFPESPVISLSELEPFT-LYFVGSISPQGFPGRYIAGVA 162 (398)
T ss_pred HHHHHHHHHh----hcCceEEEEeCCCCCcccCCCceEE-eecccCCCCCHHHcCccc-eEEEeccCCCCChHHHHHHHH
Confidence 4445677654 4345699999999864 22222222 211 0113332 333342333222333445567
Q ss_pred HHHHHHHhCCCceEEEEEecCCCcccccCCCcEEEEeccccccccCCCcchHHHHHHHHHhcCCCeEEEEeeeCCCCCCc
Q 043031 218 RLANFAETINLPFPFNISFLTDIKDFETNEGEVVAVYSPVHLSHMIRKPNCLETFLTELRKINPCVMVVIEVESNDNLQT 297 (424)
Q Consensus 218 rL~~fA~~lgvpFeF~~v~~~~l~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L~P~vvvl~E~ea~~ns~~ 297 (424)
||.++|+.. -+.++||+.-+.+= ...++.-...|...+|+.|+..|.+. ...
T Consensus 163 rL~~~a~~~---------------------~~~ilIdT~GWi~G----~~g~elk~~li~~ikP~~Ii~l~~~~---~~~ 214 (398)
T COG1341 163 RLVDLAKKE---------------------ADFILIDTDGWIKG----WGGLELKRALIDAIKPDLIIALERAN---ELS 214 (398)
T ss_pred HHHHHhhcc---------------------CCEEEEcCCCceeC----chHHHHHHHHHhhcCCCEEEEecccc---ccc
Confidence 788888744 13567887766542 24577778889999999999998773 333
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhcCCCchhHHHHHHHHHhHhHHH
Q 043031 298 FEDRFFGTLFHFGALFDCLEVCMNRCHANRMTFEEMYAGQHIRN 341 (424)
Q Consensus 298 F~~RF~eaL~~YsalFDsLda~~~~~s~~R~~iE~~~lg~eI~n 341 (424)
++.+=.++..| ...-++..++.-.||...=.+-+++.+.+
T Consensus 215 ~l~~~~~~~~~----~~~~~~~~~~sR~ER~~~R~e~~~ryf~~ 254 (398)
T COG1341 215 PLLEGVESIVY----LKVPDAVAPRSREERKELREEKYRRYFEG 254 (398)
T ss_pred hhhhcccCceE----EeccccccccChhHHHHHHHHHHHHhccC
Confidence 33333334333 33334444555555544322335555554
No 54
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=60.95 E-value=1.6e+02 Score=28.49 Aligned_cols=100 Identities=15% Similarity=0.191 Sum_probs=52.5
Q ss_pred eEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCc-eEEEEEecCCCcccc
Q 043031 166 IHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLP-FPFNISFLTDIKDFE 244 (424)
Q Consensus 166 VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvp-FeF~~v~~~~l~~l~ 244 (424)
=+|+|+|.|.|.- .. .++... |+ .-+||| |+. +...++.+.++. +..|++ .+|.. .+++++.
T Consensus 79 ~~VLDiG~G~G~~-~~---~~a~~~-g~--~~~v~g-vD~--s~~~l~~A~~~~----~~~g~~~v~~~~---~d~~~l~ 141 (272)
T PRK11873 79 ETVLDLGSGGGFD-CF---LAARRV-GP--TGKVIG-VDM--TPEMLAKARANA----RKAGYTNVEFRL---GEIEALP 141 (272)
T ss_pred CEEEEeCCCCCHH-HH---HHHHHh-CC--CCEEEE-ECC--CHHHHHHHHHHH----HHcCCCCEEEEE---cchhhCC
Confidence 3899999988742 21 223322 33 248999 875 566666655543 334543 23322 2344444
Q ss_pred cCCC--cEEEEeccccccccCCCcchHHHHHHHHHhcCCCeEEEE
Q 043031 245 TNEG--EVVAVYSPVHLSHMIRKPNCLETFLTELRKINPCVMVVI 287 (424)
Q Consensus 245 ~~~~--E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L~P~vvvl~ 287 (424)
..++ +.++.|+. +|+..+ ....+=...+-|+|.-.+++
T Consensus 142 ~~~~~fD~Vi~~~v--~~~~~d---~~~~l~~~~r~LkpGG~l~i 181 (272)
T PRK11873 142 VADNSVDVIISNCV--INLSPD---KERVFKEAFRVLKPGGRFAI 181 (272)
T ss_pred CCCCceeEEEEcCc--ccCCCC---HHHHHHHHHHHcCCCcEEEE
Confidence 3333 34555665 455543 22333345577899755544
No 55
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=60.12 E-value=1.3e+02 Score=30.12 Aligned_cols=99 Identities=17% Similarity=0.225 Sum_probs=59.8
Q ss_pred eeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCc-eEEEEEecCCCccc
Q 043031 165 KIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLP-FPFNISFLTDIKDF 243 (424)
Q Consensus 165 ~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvp-FeF~~v~~~~l~~l 243 (424)
.-+|+|++.|.|. +--.||.+ + -+++| |+. +...++.+.++ |+..|++ .+|..- +..++
T Consensus 174 ~~~VLDl~cG~G~----~sl~la~~--~----~~V~g-vD~--s~~av~~A~~n----~~~~~l~~v~~~~~---D~~~~ 233 (315)
T PRK03522 174 PRSMWDLFCGVGG----FGLHCATP--G----MQLTG-IEI--SAEAIACAKQS----AAELGLTNVQFQAL---DSTQF 233 (315)
T ss_pred CCEEEEccCCCCH----HHHHHHhc--C----CEEEE-EeC--CHHHHHHHHHH----HHHcCCCceEEEEc---CHHHH
Confidence 3579999999985 33445553 2 26899 874 66667666544 3455664 555433 33221
Q ss_pred -c-c-CCCcEEEEeccccccccCCCcchHHHHHHHHHhcCCCeEEEEeeeC
Q 043031 244 -E-T-NEGEVVAVYSPVHLSHMIRKPNCLETFLTELRKINPCVMVVIEVES 291 (424)
Q Consensus 244 -~-~-~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L~P~vvvl~E~ea 291 (424)
. . ..-+.+++|=+ ..+.-..++..+.+++|+-++.+..+.
T Consensus 234 ~~~~~~~~D~Vv~dPP--------r~G~~~~~~~~l~~~~~~~ivyvsc~p 276 (315)
T PRK03522 234 ATAQGEVPDLVLVNPP--------RRGIGKELCDYLSQMAPRFILYSSCNA 276 (315)
T ss_pred HHhcCCCCeEEEECCC--------CCCccHHHHHHHHHcCCCeEEEEECCc
Confidence 1 1 12357777733 112234677888999999888876553
No 56
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=59.21 E-value=1.5e+02 Score=27.44 Aligned_cols=100 Identities=21% Similarity=0.285 Sum_probs=53.1
Q ss_pred CCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCC--ceEEEEEecCCC
Q 043031 163 AKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINL--PFPFNISFLTDI 240 (424)
Q Consensus 163 ~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgv--pFeF~~v~~~~l 240 (424)
.+.-.|+|+|.|.|. +...|+.+ + .++|| ++. +...++.+.++..+ .++ ...|... ++
T Consensus 62 ~~~~~vLDvGcG~G~----~~~~l~~~--~----~~v~~-~D~--s~~~i~~a~~~~~~----~~~~~~i~~~~~---d~ 121 (230)
T PRK07580 62 LTGLRILDAGCGVGS----LSIPLARR--G----AKVVA-SDI--SPQMVEEARERAPE----AGLAGNITFEVG---DL 121 (230)
T ss_pred CCCCEEEEEeCCCCH----HHHHHHHc--C----CEEEE-EEC--CHHHHHHHHHHHHh----cCCccCcEEEEc---Cc
Confidence 345689999999885 33445544 2 24899 874 66667766665433 333 3334432 22
Q ss_pred cccccCCCcEEEEeccccccccCCCcchHHHHHHHHHhcCCCeEEEE
Q 043031 241 KDFETNEGEVVAVYSPVHLSHMIRKPNCLETFLTELRKINPCVMVVI 287 (424)
Q Consensus 241 ~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L~P~vvvl~ 287 (424)
.... ..=+.++.+ ..+||..+ .....+++.+.++.+..+++.
T Consensus 122 ~~~~-~~fD~v~~~--~~l~~~~~--~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 122 ESLL-GRFDTVVCL--DVLIHYPQ--EDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred hhcc-CCcCEEEEc--chhhcCCH--HHHHHHHHHHHhhcCCeEEEE
Confidence 1111 111233333 33566543 335677777766655444443
No 57
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=58.57 E-value=76 Score=32.55 Aligned_cols=98 Identities=9% Similarity=0.122 Sum_probs=54.4
Q ss_pred CeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEEecCCCccc
Q 043031 164 KKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFNISFLTDIKDF 243 (424)
Q Consensus 164 ~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~v~~~~l~~l 243 (424)
...+|+|+|.|.|.- ...++.+. ++ .++|+ ++. +...++.+.++.. .-++.| + ..+..++
T Consensus 113 ~~~~VLDLGcGtG~~----~l~La~~~--~~--~~Vtg-VD~--S~~mL~~A~~k~~----~~~i~~----i-~gD~e~l 172 (340)
T PLN02490 113 RNLKVVDVGGGTGFT----TLGIVKHV--DA--KNVTI-LDQ--SPHQLAKAKQKEP----LKECKI----I-EGDAEDL 172 (340)
T ss_pred CCCEEEEEecCCcHH----HHHHHHHC--CC--CEEEE-EEC--CHHHHHHHHHhhh----ccCCeE----E-eccHHhC
Confidence 456899999999863 33445443 22 47999 874 6666666555421 223432 2 2344443
Q ss_pred ccCCC--cEEEEeccccccccCCCcchHHHHHHH-HHhcCCCeEEEE
Q 043031 244 ETNEG--EVVAVYSPVHLSHMIRKPNCLETFLTE-LRKINPCVMVVI 287 (424)
Q Consensus 244 ~~~~~--E~laVN~~~~Lh~l~~~~~~~~~~L~~-ir~L~P~vvvl~ 287 (424)
...++ +.++.|.. ||++.+ .+.+|+. .+.|+|.-.+++
T Consensus 173 p~~~~sFDvVIs~~~--L~~~~d----~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 173 PFPTDYADRYVSAGS--IEYWPD----PQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred CCCCCceeEEEEcCh--hhhCCC----HHHHHHHHHHhcCCCcEEEE
Confidence 33332 45555543 577653 2345554 477899766554
No 58
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=56.92 E-value=1.7e+02 Score=27.34 Aligned_cols=104 Identities=13% Similarity=0.188 Sum_probs=53.9
Q ss_pred CCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEEecCCCc
Q 043031 162 SAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFNISFLTDIK 241 (424)
Q Consensus 162 g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~v~~~~l~ 241 (424)
..+..+|+|+|.|.|. +...++.+ + .++|+ |+. +...++.+.+++. ..++..+|......++.
T Consensus 46 ~~~~~~vLdiG~G~G~----~~~~l~~~--~----~~v~~-iD~--s~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~ 108 (233)
T PRK05134 46 GLFGKRVLDVGCGGGI----LSESMARL--G----ADVTG-IDA--SEENIEVARLHAL----ESGLKIDYRQTTAEELA 108 (233)
T ss_pred CCCCCeEEEeCCCCCH----HHHHHHHc--C----CeEEE-EcC--CHHHHHHHHHHHH----HcCCceEEEecCHHHhh
Confidence 4456789999999875 33344544 2 36899 874 5555655554432 33455555443222221
Q ss_pred ccccCCCcEEEEeccccccccCCCcchHHHHHHHH-HhcCCCeEEEEe
Q 043031 242 DFETNEGEVVAVYSPVHLSHMIRKPNCLETFLTEL-RKINPCVMVVIE 288 (424)
Q Consensus 242 ~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvl~E 288 (424)
...-..-+.++. ...++|+.+ ...+|+.+ +.|+|.-.+++.
T Consensus 109 ~~~~~~fD~Ii~--~~~l~~~~~----~~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 109 AEHPGQFDVVTC--MEMLEHVPD----PASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred hhcCCCccEEEE--hhHhhccCC----HHHHHHHHHHHcCCCcEEEEE
Confidence 101111133333 344666543 33455544 667897665554
No 59
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=56.69 E-value=47 Score=32.33 Aligned_cols=110 Identities=15% Similarity=0.232 Sum_probs=67.2
Q ss_pred hcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEEecCC
Q 043031 160 VSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFNISFLTD 239 (424)
Q Consensus 160 ~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~v~~~~ 239 (424)
+.-+.---|+|+|.|-|.+ -+-|+.|=.+ =.||| |++ |.+.++++.+|| ...+|..- +
T Consensus 26 Vp~~~~~~v~DLGCGpGns----TelL~~RwP~----A~i~G-iDs--S~~Mla~Aa~rl--------p~~~f~~a---D 83 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNS----TELLARRWPD----AVITG-IDS--SPAMLAKAAQRL--------PDATFEEA---D 83 (257)
T ss_pred CCccccceeeecCCCCCHH----HHHHHHhCCC----CeEee-ccC--CHHHHHHHHHhC--------CCCceecc---c
Confidence 3445556799999999975 3456667422 36999 985 777777776654 34444322 2
Q ss_pred CcccccC-CCcEEEEeccccccccCCCcchHHHHHHHHHhcCCCeEEEEeeeCCCCCC
Q 043031 240 IKDFETN-EGEVVAVYSPVHLSHMIRKPNCLETFLTELRKINPCVMVVIEVESNDNLQ 296 (424)
Q Consensus 240 l~~l~~~-~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L~P~vvvl~E~ea~~ns~ 296 (424)
+.+.+-. +-..|.-|.+| |-|.+. .+.|-+.+-.|.|.-+.-|-.-.|+..|
T Consensus 84 l~~w~p~~~~dllfaNAvl--qWlpdH---~~ll~rL~~~L~Pgg~LAVQmPdN~dep 136 (257)
T COG4106 84 LRTWKPEQPTDLLFANAVL--QWLPDH---PELLPRLVSQLAPGGVLAVQMPDNLDEP 136 (257)
T ss_pred HhhcCCCCccchhhhhhhh--hhcccc---HHHHHHHHHhhCCCceEEEECCCccCch
Confidence 2212211 22345557764 556554 3456678888999988888665555444
No 60
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=56.25 E-value=2.1e+02 Score=28.85 Aligned_cols=113 Identities=14% Similarity=0.112 Sum_probs=55.8
Q ss_pred HHHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEE
Q 043031 155 AVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFNI 234 (424)
Q Consensus 155 aIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~ 234 (424)
.|++.+..-+.-+|+|+|.|.|. ++..++.+ | |. +++| |++ +...+.+. +...+++. .+.+.+|..
T Consensus 113 ~l~~~l~~l~g~~VLDIGCG~G~----~~~~la~~--g-~~--~V~G-iD~--S~~~l~q~-~a~~~~~~-~~~~i~~~~ 178 (322)
T PRK15068 113 RVLPHLSPLKGRTVLDVGCGNGY----HMWRMLGA--G-AK--LVVG-IDP--SQLFLCQF-EAVRKLLG-NDQRAHLLP 178 (322)
T ss_pred HHHHhhCCCCCCEEEEeccCCcH----HHHHHHHc--C-CC--EEEE-EcC--CHHHHHHH-HHHHHhcC-CCCCeEEEe
Confidence 34444432223479999999985 33345554 3 32 5899 874 44333211 11112221 122344444
Q ss_pred EecCCCcccccCCCcEEEEeccccccccCCCcchHHHHHHHHHhcCCCeEEEEe
Q 043031 235 SFLTDIKDFETNEGEVVAVYSPVHLSHMIRKPNCLETFLTELRKINPCVMVVIE 288 (424)
Q Consensus 235 v~~~~l~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L~P~vvvl~E 288 (424)
. +++++.. ++-.=+|-|+..|||+. ++.+.+-..-+.|+|.-.++.+
T Consensus 179 ~---d~e~lp~-~~~FD~V~s~~vl~H~~---dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 179 L---GIEQLPA-LKAFDTVFSMGVLYHRR---SPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred C---CHHHCCC-cCCcCEEEECChhhccC---CHHHHHHHHHHhcCCCcEEEEE
Confidence 3 3333332 22111233444578864 3344444555788998777665
No 61
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=56.17 E-value=32 Score=30.12 Aligned_cols=39 Identities=26% Similarity=0.392 Sum_probs=26.4
Q ss_pred hcCCCeeEEEeccCCCCCChHHHHHHHHhc--CCCCCcceEEEEEeCC
Q 043031 160 VSSAKKIHIIDLATRTGSHCPAIMQALATR--QGCPPELLKITMVVGT 205 (424)
Q Consensus 160 ~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R--~ggpP~~LRIT~~i~~ 205 (424)
-...+..+|||+|-|.|. |=+.|+.. ... | .++|+| |+.
T Consensus 21 ~~~~~~~~vvD~GsG~Gy----Ls~~La~~l~~~~-~-~~~v~~-iD~ 61 (141)
T PF13679_consen 21 GESKRCITVVDLGSGKGY----LSRALAHLLCNSS-P-NLRVLG-IDC 61 (141)
T ss_pred hccCCCCEEEEeCCChhH----HHHHHHHHHHhcC-C-CCeEEE-EEC
Confidence 345788999999999996 33444441 112 4 389999 975
No 62
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=56.01 E-value=27 Score=32.85 Aligned_cols=51 Identities=18% Similarity=0.283 Sum_probs=35.5
Q ss_pred hhcCCCeeEEEeccCCCC---CChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 043031 159 NVSSAKKIHIIDLATRTG---SHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFA 223 (424)
Q Consensus 159 A~~g~~~VHIIDf~i~~G---~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA 223 (424)
+++-.+.=|++|+|-|.| .+|. ++ + | ..|+++ |+ .+.+.++.+.++..+|.
T Consensus 29 ~L~~~~g~~l~DIGaGtGsi~iE~a-~~--------~-p-~~~v~A-Ie--~~~~a~~~~~~N~~~fg 82 (187)
T COG2242 29 KLRPRPGDRLWDIGAGTGSITIEWA-LA--------G-P-SGRVIA-IE--RDEEALELIERNAARFG 82 (187)
T ss_pred hhCCCCCCEEEEeCCCccHHHHHHH-Hh--------C-C-CceEEE-Ee--cCHHHHHHHHHHHHHhC
Confidence 344344449999999988 4664 11 2 4 479999 97 47778888888876664
No 63
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=54.92 E-value=1.5e+02 Score=29.91 Aligned_cols=113 Identities=13% Similarity=0.093 Sum_probs=56.4
Q ss_pred HHHHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEE
Q 043031 154 QAVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFN 233 (424)
Q Consensus 154 qaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~ 233 (424)
.++++.+...+.=+|+|+|.|.|. ++..++.+ |+ . ++|| |++ +...+.+. +...+++.. .-...+.
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~----~~~~~~~~--g~-~--~v~G-iDp--S~~ml~q~-~~~~~~~~~-~~~v~~~ 176 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGY----HMWRMLGH--GA-K--SLVG-IDP--TVLFLCQF-EAVRKLLDN-DKRAILE 176 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcH----HHHHHHHc--CC-C--EEEE-EcC--CHHHHHHH-HHHHHHhcc-CCCeEEE
Confidence 345555543333489999999996 44455544 33 2 6899 985 44444332 222222221 1123333
Q ss_pred EEecCCCccccc-CCCcEEEEeccccccccCCCcchHHHHHHHHHhcCCCeEEEEe
Q 043031 234 ISFLTDIKDFET-NEGEVVAVYSPVHLSHMIRKPNCLETFLTELRKINPCVMVVIE 288 (424)
Q Consensus 234 ~v~~~~l~~l~~-~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L~P~vvvl~E 288 (424)
.. +++++.. ..=++|+. +..|+|+. ++.+.+-..-+.|+|.-.++++
T Consensus 177 ~~---~ie~lp~~~~FD~V~s--~gvL~H~~---dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 177 PL---GIEQLHELYAFDTVFS--MGVLYHRK---SPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred EC---CHHHCCCCCCcCEEEE--cchhhccC---CHHHHHHHHHHhcCCCCEEEEE
Confidence 32 2222221 11134433 34468864 3344444445779998666654
No 64
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=54.54 E-value=1.3e+02 Score=28.01 Aligned_cols=99 Identities=18% Similarity=0.227 Sum_probs=53.4
Q ss_pred EEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEEecCCCccccc-
Q 043031 167 HIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFNISFLTDIKDFET- 245 (424)
Q Consensus 167 HIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~v~~~~l~~l~~- 245 (424)
+|+|+|.|.|. +...++.+. | ..++|| ++. +...++.+.+++ +..|+.-....+.. +..+...
T Consensus 2 ~vLDiGcG~G~----~~~~la~~~---~-~~~v~g-id~--s~~~~~~a~~~~----~~~gl~~~i~~~~~-d~~~~~~~ 65 (224)
T smart00828 2 RVLDFGCGYGS----DLIDLAERH---P-HLQLHG-YTI--SPEQAEVGRERI----RALGLQGRIRIFYR-DSAKDPFP 65 (224)
T ss_pred eEEEECCCCCH----HHHHHHHHC---C-CCEEEE-EEC--CHHHHHHHHHHH----HhcCCCcceEEEec-ccccCCCC
Confidence 68999988885 345566653 2 258999 874 666666565554 33455433333321 2211100
Q ss_pred CCCcEEEEeccccccccCCCcchHHHHHHHH-HhcCCCeEEEE
Q 043031 246 NEGEVVAVYSPVHLSHMIRKPNCLETFLTEL-RKINPCVMVVI 287 (424)
Q Consensus 246 ~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvl~ 287 (424)
..=+.++ +...+||+.+ .+.+|+.+ +.|+|.-.+++
T Consensus 66 ~~fD~I~--~~~~l~~~~~----~~~~l~~~~~~LkpgG~l~i 102 (224)
T smart00828 66 DTYDLVF--GFEVIHHIKD----KMDLFSNISRHLKDGGHLVL 102 (224)
T ss_pred CCCCEee--hHHHHHhCCC----HHHHHHHHHHHcCCCCEEEE
Confidence 1112333 3344677643 45677666 56899766554
No 65
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=54.53 E-value=52 Score=32.94 Aligned_cols=117 Identities=15% Similarity=0.246 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCC
Q 043031 148 TVFAGIQAVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETIN 227 (424)
Q Consensus 148 a~~tANqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lg 227 (424)
|.+..-..|++-+.=++--||.|+|.| |-.|+.-.|.+-| +++|| |.. |....+.+.+| ++..|
T Consensus 56 AQ~~k~~~~~~kl~L~~G~~lLDiGCG----WG~l~~~aA~~y~-----v~V~G-vTl--S~~Q~~~~~~r----~~~~g 119 (283)
T COG2230 56 AQRAKLDLILEKLGLKPGMTLLDIGCG----WGGLAIYAAEEYG-----VTVVG-VTL--SEEQLAYAEKR----IAARG 119 (283)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEeCCC----hhHHHHHHHHHcC-----CEEEE-eeC--CHHHHHHHHHH----HHHcC
Confidence 344555667777766677899999655 8889999999863 68999 764 66656555555 34456
Q ss_pred CceEEEEEecCCCcccccCCCcEEEEeccccccccCCCcchHHHHHHHHHh-cCCCeEEE
Q 043031 228 LPFPFNISFLTDIKDFETNEGEVVAVYSPVHLSHMIRKPNCLETFLTELRK-INPCVMVV 286 (424)
Q Consensus 228 vpFeF~~v~~~~l~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~-L~P~vvvl 286 (424)
++=..+.+. .+..++.-.=|-+ -++=.++|+.. ..-+.|++.+++ |+|+-..+
T Consensus 120 l~~~v~v~l-~d~rd~~e~fDrI---vSvgmfEhvg~--~~~~~ff~~~~~~L~~~G~~l 173 (283)
T COG2230 120 LEDNVEVRL-QDYRDFEEPFDRI---VSVGMFEHVGK--ENYDDFFKKVYALLKPGGRML 173 (283)
T ss_pred CCcccEEEe-cccccccccccee---eehhhHHHhCc--ccHHHHHHHHHhhcCCCceEE
Confidence 652222221 2333332222222 23334577754 336688888855 57754443
No 66
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=53.95 E-value=1.8e+02 Score=26.80 Aligned_cols=98 Identities=15% Similarity=0.267 Sum_probs=52.2
Q ss_pred CeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCC-ceEEEEEecCCCcc
Q 043031 164 KKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINL-PFPFNISFLTDIKD 242 (424)
Q Consensus 164 ~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgv-pFeF~~v~~~~l~~ 242 (424)
+...|+|+|.|.|. +...++.. + + ++|+ ++. +...++.+.+++.. .++ ++.|... +..+
T Consensus 45 ~~~~vLdlG~G~G~----~~~~l~~~--~-~---~v~~-iD~--s~~~~~~a~~~~~~----~~~~~~~~~~~---d~~~ 104 (224)
T TIGR01983 45 FGLRVLDVGCGGGL----LSEPLARL--G-A---NVTG-IDA--SEENIEVAKLHAKK----DPLLKIEYRCT---SVED 104 (224)
T ss_pred CCCeEEEECCCCCH----HHHHHHhc--C-C---eEEE-EeC--CHHHHHHHHHHHHH----cCCCceEEEeC---CHHH
Confidence 35689999999884 33345543 2 2 4888 874 56566666555442 344 3444332 2222
Q ss_pred c--cc-CCCcEEEEeccccccccCCCcchHHHHHHHH-HhcCCCeEEEE
Q 043031 243 F--ET-NEGEVVAVYSPVHLSHMIRKPNCLETFLTEL-RKINPCVMVVI 287 (424)
Q Consensus 243 l--~~-~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvl~ 287 (424)
+ .. .+-+.++.+ ..+||..+ ...+|+.+ +.|+|.-++++
T Consensus 105 ~~~~~~~~~D~i~~~--~~l~~~~~----~~~~l~~~~~~L~~gG~l~i 147 (224)
T TIGR01983 105 LAEKGAKSFDVVTCM--EVLEHVPD----PQAFIRACAQLLKPGGILFF 147 (224)
T ss_pred hhcCCCCCccEEEeh--hHHHhCCC----HHHHHHHHHHhcCCCcEEEE
Confidence 1 11 122444443 34566643 34566555 66788866555
No 67
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=53.22 E-value=15 Score=29.54 Aligned_cols=95 Identities=24% Similarity=0.306 Sum_probs=40.7
Q ss_pred EeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEEecCCCccccc-CC
Q 043031 169 IDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFNISFLTDIKDFET-NE 247 (424)
Q Consensus 169 IDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~v~~~~l~~l~~-~~ 247 (424)
+|+|-|.|.==..|++.+ | ..++|| ++. |...++.+.+|+.+.- +..+++..+...+..+... ..
T Consensus 1 LdiGcG~G~~~~~l~~~~-------~-~~~~~~-~D~--s~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 66 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-------P-DARYTG-VDI--SPSMLERARERLAELG---NDNFERLRFDVLDLFDYDPPES 66 (99)
T ss_dssp -EESTTTS-TTTTHHHHC---------EEEEEE-EES--SSSTTSTTCCCHHHCT------EEEEE--SSS---CCC---
T ss_pred CEeCccChHHHHHHHHhC-------C-CCEEEE-EEC--CHHHHHHHHHHhhhcC---CcceeEEEeecCChhhcccccc
Confidence 477888776444444444 4 489999 985 4444544544543322 2222332222222211111 12
Q ss_pred CcEEEEeccccccccCCCcchHHHHHHHHH-hcCCCe
Q 043031 248 GEVVAVYSPVHLSHMIRKPNCLETFLTELR-KINPCV 283 (424)
Q Consensus 248 ~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir-~L~P~v 283 (424)
=+.++.+ ..|||+ .....+|+.++ -|+|.-
T Consensus 67 fD~V~~~--~vl~~l----~~~~~~l~~~~~~L~pgG 97 (99)
T PF08242_consen 67 FDLVVAS--NVLHHL----EDIEAVLRNIYRLLKPGG 97 (99)
T ss_dssp -SEEEEE---TTS------S-HHHHHHHHTTT-TSS-
T ss_pred cceehhh--hhHhhh----hhHHHHHHHHHHHcCCCC
Confidence 2344444 447888 23557787774 457754
No 68
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=51.67 E-value=1.6e+02 Score=27.29 Aligned_cols=123 Identities=11% Similarity=0.155 Sum_probs=63.6
Q ss_pred CeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCC-ceEEEEEecCCC-c
Q 043031 164 KKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINL-PFPFNISFLTDI-K 241 (424)
Q Consensus 164 ~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgv-pFeF~~v~~~~l-~ 241 (424)
+.-.|+|+|.|.|.-...| +.+ . |. -++|| |+. +.+.++.+.+++.. .++ +++|.. .+. +
T Consensus 40 ~~~~VLDiGcGtG~~~~~l----a~~--~-p~-~~v~g-VD~--s~~~i~~a~~~~~~----~~~~~v~~~~---~d~~~ 101 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEM----AKA--N-PD-INFIG-IEV--HEPGVGKALKKIEE----EGLTNLRLLC---GDAVE 101 (202)
T ss_pred CCCeEEEEccCCCHHHHHH----HHH--C-CC-ccEEE-EEe--chHHHHHHHHHHHH----cCCCCEEEEe---cCHHH
Confidence 4467999999999754444 444 2 32 58999 985 66666666555433 343 234332 233 2
Q ss_pred ccc--cCCC--cEEEEeccccccccCCC--cchHHHHHHHH-HhcCCCeEEEEeeeCCCCCCchHHHHHHHHHH
Q 043031 242 DFE--TNEG--EVVAVYSPVHLSHMIRK--PNCLETFLTEL-RKINPCVMVVIEVESNDNLQTFEDRFFGTLFH 308 (424)
Q Consensus 242 ~l~--~~~~--E~laVN~~~~Lh~l~~~--~~~~~~~L~~i-r~L~P~vvvl~E~ea~~ns~~F~~RF~eaL~~ 308 (424)
.+. +.++ +.+++|.....++.... ....+.+|+.+ +-|+|.-+++.-. +...+.....+.+.=
T Consensus 102 ~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~----~~~~~~~~~~~~~~~ 171 (202)
T PRK00121 102 VLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT----DWEGYAEYMLEVLSA 171 (202)
T ss_pred HHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc----CCHHHHHHHHHHHHh
Confidence 222 3232 45666654332211110 01135677776 5889976665532 223444444444433
No 69
>PF04461 DUF520: Protein of unknown function (DUF520); InterPro: IPR007551 This entry represents the UPF0234 family of uncharacterised proteins.; PDB: 1IN0_A.
Probab=50.02 E-value=23 Score=32.43 Aligned_cols=32 Identities=19% Similarity=0.444 Sum_probs=23.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEE
Q 043031 196 LLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFNI 234 (424)
Q Consensus 196 ~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~ 234 (424)
.+|+|| .+.+.|+++-..|. ...+|+|++|.-
T Consensus 127 ~vRVtg-----KkrDDLQ~viallk--~~d~~~pLQF~N 158 (160)
T PF04461_consen 127 QVRVTG-----KKRDDLQEVIALLK--EQDLGIPLQFNN 158 (160)
T ss_dssp EEEEEE-----S-HHHHHHHHHHHH--HS--SS--EEEE
T ss_pred EEEEec-----CCHHHHHHHHHHHH--cccCCCCceecc
Confidence 599999 68999999999888 458999999974
No 70
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=49.84 E-value=2.3e+02 Score=27.97 Aligned_cols=114 Identities=16% Similarity=0.247 Sum_probs=64.8
Q ss_pred HHHHHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEE
Q 043031 153 IQAVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPF 232 (424)
Q Consensus 153 NqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF 232 (424)
...|+|.+.=++-=||+|+|.| |-.++..+|++.| .++|| |.. |.+..+.+. +.++..|++=..
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcG----wG~~~~~~a~~~g-----~~v~g-itl--S~~Q~~~a~----~~~~~~gl~~~v 114 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCG----WGGLAIYAAERYG-----CHVTG-ITL--SEEQAEYAR----ERIREAGLEDRV 114 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-T----TSHHHHHHHHHH-------EEEE-EES---HHHHHHHH----HHHHCSTSSSTE
T ss_pred HHHHHHHhCCCCCCEEEEeCCC----ccHHHHHHHHHcC-----cEEEE-EEC--CHHHHHHHH----HHHHhcCCCCce
Confidence 3567777754455599999766 7789999999863 57999 764 555554444 345677876333
Q ss_pred EEEecCCCcccccCCCcEEEEeccccccccCCCcchHHHHHHHH-HhcCCCeEEEEe
Q 043031 233 NISFLTDIKDFETNEGEVVAVYSPVHLSHMIRKPNCLETFLTEL-RKINPCVMVVIE 288 (424)
Q Consensus 233 ~~v~~~~l~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvl~E 288 (424)
..+. .+..++...=|-++.| -.+-|+.. ...+.|++.+ +-|+|.-..++.
T Consensus 115 ~v~~-~D~~~~~~~fD~IvSi---~~~Ehvg~--~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 115 EVRL-QDYRDLPGKFDRIVSI---EMFEHVGR--KNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp EEEE-S-GGG---S-SEEEEE---SEGGGTCG--GGHHHHHHHHHHHSETTEEEEEE
T ss_pred EEEE-eeccccCCCCCEEEEE---echhhcCh--hHHHHHHHHHHHhcCCCcEEEEE
Confidence 3332 2443433322333333 23567642 4467888888 667998777764
No 71
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=49.04 E-value=2.7e+02 Score=28.66 Aligned_cols=96 Identities=15% Similarity=0.159 Sum_probs=58.0
Q ss_pred EEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCc-eEEEEEecCCCcc-cc
Q 043031 167 HIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLP-FPFNISFLTDIKD-FE 244 (424)
Q Consensus 167 HIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvp-FeF~~v~~~~l~~-l~ 244 (424)
+|+|++.|.|. +--.||.+ + -+++| |+. +...++.+.+++ +..|++ .+|..- +..+ +.
T Consensus 236 ~vLDL~cG~G~----~~l~la~~--~----~~v~~-vE~--~~~av~~a~~N~----~~~~~~~~~~~~~---d~~~~~~ 295 (374)
T TIGR02085 236 QMWDLFCGVGG----FGLHCAGP--D----TQLTG-IEI--ESEAIACAQQSA----QMLGLDNLSFAAL---DSAKFAT 295 (374)
T ss_pred EEEEccCCccH----HHHHHhhc--C----CeEEE-EEC--CHHHHHHHHHHH----HHcCCCcEEEEEC---CHHHHHH
Confidence 68999998883 33344533 2 26899 874 666676666554 444553 444322 3322 11
Q ss_pred -c-CCCcEEEEeccccccccCCCcchHHHHHHHHHhcCCCeEEEEeee
Q 043031 245 -T-NEGEVVAVYSPVHLSHMIRKPNCLETFLTELRKINPCVMVVIEVE 290 (424)
Q Consensus 245 -~-~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L~P~vvvl~E~e 290 (424)
. ..-++|++|=+. .+.-..++..|..++|+-+|.++-+
T Consensus 296 ~~~~~~D~vi~DPPr--------~G~~~~~l~~l~~~~p~~ivyvsc~ 335 (374)
T TIGR02085 296 AQMSAPELVLVNPPR--------RGIGKELCDYLSQMAPKFILYSSCN 335 (374)
T ss_pred hcCCCCCEEEECCCC--------CCCcHHHHHHHHhcCCCeEEEEEeC
Confidence 1 223678888552 1223578888889999988888754
No 72
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=47.48 E-value=1.2e+02 Score=27.14 Aligned_cols=108 Identities=10% Similarity=0.202 Sum_probs=57.6
Q ss_pred HHHHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEE
Q 043031 154 QAVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFN 233 (424)
Q Consensus 154 qaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~ 233 (424)
+.|++.+.-.+.=+|+|+|.|.|. |...|+.+ + -++|+ |+. +...++.+.+++.. . + .+.
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~----lt~~l~~~-~-----~~v~~-vE~--~~~~~~~~~~~~~~----~--~-~v~ 62 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGA----LTEELLER-A-----ARVTA-IEI--DPRLAPRLREKFAA----A--D-NLT 62 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccH----HHHHHHhc-C-----CeEEE-EEC--CHHHHHHHHHHhcc----C--C-CEE
Confidence 345666653333489999999886 55666666 2 27999 874 55556655555432 1 1 223
Q ss_pred EEecCCCcccccCC--CcEEEEeccccccccCCCcchHHHHHHHHHh--cCCCeEEEEeee
Q 043031 234 ISFLTDIKDFETNE--GEVVAVYSPVHLSHMIRKPNCLETFLTELRK--INPCVMVVIEVE 290 (424)
Q Consensus 234 ~v~~~~l~~l~~~~--~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~--L~P~vvvl~E~e 290 (424)
.+. .+..++.... -..++-|.++.. . -+.+.+.+.. +.+..+++++.|
T Consensus 63 ii~-~D~~~~~~~~~~~d~vi~n~Py~~---~-----~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 63 VIH-GDALKFDLPKLQPYKVVGNLPYNI---S-----TPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred EEE-CchhcCCccccCCCEEEECCCccc---H-----HHHHHHHHhcCCCcceEEEEEEHH
Confidence 332 2333332222 245666766532 1 1223333333 347777777766
No 73
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=44.76 E-value=2.5e+02 Score=25.71 Aligned_cols=95 Identities=20% Similarity=0.303 Sum_probs=50.7
Q ss_pred eEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCc-eEEEEEecCCCcccc
Q 043031 166 IHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLP-FPFNISFLTDIKDFE 244 (424)
Q Consensus 166 VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvp-FeF~~v~~~~l~~l~ 244 (424)
-+|+|+|.|.|.- ++ .||.. + |. .++|| |+. +...++.+.+ .++..|++ ++|..- +..++.
T Consensus 44 ~~vLDiGcGtG~~--s~--~la~~--~-~~-~~V~~-iD~--s~~~~~~a~~----~~~~~~~~~i~~i~~---d~~~~~ 105 (181)
T TIGR00138 44 KKVIDIGSGAGFP--GI--PLAIA--R-PE-LKLTL-LES--NHKKVAFLRE----VKAELGLNNVEIVNG---RAEDFQ 105 (181)
T ss_pred CeEEEecCCCCcc--HH--HHHHH--C-CC-CeEEE-EeC--cHHHHHHHHH----HHHHhCCCCeEEEec---chhhcc
Confidence 4899999999932 11 12222 1 32 58999 985 5554544433 33445664 444332 333321
Q ss_pred c-CCCcEEEEeccccccccCCCcchHHHHHHHH-HhcCCCeEEEEe
Q 043031 245 T-NEGEVVAVYSPVHLSHMIRKPNCLETFLTEL-RKINPCVMVVIE 288 (424)
Q Consensus 245 ~-~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvl~E 288 (424)
. .+=+.++.|+ +++ .+.+++.+ +-|+|.-.+++.
T Consensus 106 ~~~~fD~I~s~~---~~~-------~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 106 HEEQFDVITSRA---LAS-------LNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred ccCCccEEEehh---hhC-------HHHHHHHHHHhcCCCCEEEEE
Confidence 1 1224555554 333 23455554 458998888876
No 74
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=44.18 E-value=29 Score=34.29 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=22.0
Q ss_pred cCCCeeEEEeccCCCCCChHHHHHHHHh
Q 043031 161 SSAKKIHIIDLATRTGSHCPAIMQALAT 188 (424)
Q Consensus 161 ~g~~~VHIIDf~i~~G~QWp~LiqaLa~ 188 (424)
.|.+.+||||+|-+.+.+ -.+|.++++
T Consensus 55 ~Ga~~lHvVDLdgg~~~n-~~~i~~i~~ 81 (262)
T PLN02446 55 DGLTGGHVIMLGADDASL-AAALEALRA 81 (262)
T ss_pred CCCCEEEEEECCCCCccc-HHHHHHHHh
Confidence 589999999999877777 556777876
No 75
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=43.74 E-value=2.7e+02 Score=29.23 Aligned_cols=107 Identities=17% Similarity=0.177 Sum_probs=62.2
Q ss_pred hhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCc-eEEEEEe
Q 043031 158 ENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLP-FPFNISF 236 (424)
Q Consensus 158 eA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvp-FeF~~v~ 236 (424)
+.+...+.-+|+|+|.|.|. +--.||.+ + -+++| |+. +...++.+.+++ +..|+. .+|..-.
T Consensus 291 ~~l~~~~~~~VLDlgcGtG~----~sl~la~~--~----~~V~g-vD~--s~~al~~A~~n~----~~~~~~~v~~~~~d 353 (443)
T PRK13168 291 EWLDPQPGDRVLDLFCGLGN----FTLPLARQ--A----AEVVG-VEG--VEAMVERARENA----RRNGLDNVTFYHAN 353 (443)
T ss_pred HHhcCCCCCEEEEEeccCCH----HHHHHHHh--C----CEEEE-EeC--CHHHHHHHHHHH----HHcCCCceEEEEeC
Confidence 33333344689999999995 33346655 2 26899 874 777777766554 344543 4443332
Q ss_pred cCC-CcccccC--CCcEEEEeccccccccCCCcchHHHHHHHHHhcCCCeEEEEeee
Q 043031 237 LTD-IKDFETN--EGEVVAVYSPVHLSHMIRKPNCLETFLTELRKINPCVMVVIEVE 290 (424)
Q Consensus 237 ~~~-l~~l~~~--~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L~P~vvvl~E~e 290 (424)
..+ +.++... .-++|++|=+.. ..+.++..+.+++|+-++.+..+
T Consensus 354 ~~~~l~~~~~~~~~fD~Vi~dPPr~---------g~~~~~~~l~~~~~~~ivyvSCn 401 (443)
T PRK13168 354 LEEDFTDQPWALGGFDKVLLDPPRA---------GAAEVMQALAKLGPKRIVYVSCN 401 (443)
T ss_pred hHHhhhhhhhhcCCCCEEEECcCCc---------ChHHHHHHHHhcCCCeEEEEEeC
Confidence 111 1111111 125666664431 14567789999999999888765
No 76
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=42.06 E-value=1.1e+02 Score=28.66 Aligned_cols=111 Identities=10% Similarity=0.177 Sum_probs=69.2
Q ss_pred CeeEEEeccCC---CCCChHHHHHHHHhcCCCCCcceEE-EEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEEecCC
Q 043031 164 KKIHIIDLATR---TGSHCPAIMQALATRQGCPPELLKI-TMVVGTTPSKQKFEEIENRLANFAETINLPFPFNISFLTD 239 (424)
Q Consensus 164 ~~VHIIDf~i~---~G~QWp~LiqaLa~R~ggpP~~LRI-T~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~v~~~~ 239 (424)
.+|+||.|=-+ -+-.=.++|.+|+.+ |=|...... || |+. .+....++.-+.+|+++.++.|-|.++..++
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~-~~~~~~y~~t~~-IN~---dd~~~~~~~fVk~fie~~~~~~P~~~vllD~ 133 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAA-KFPPVKYQTTTI-INA---DDAIVGTGMFVKSSAKKGKKENPWSQVVLDD 133 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHc-CCCcccccceEE-EEC---ccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence 47999999654 345677899999765 122211222 66 763 3346678889999999999988877776532
Q ss_pred Cc----ccccCC-CcE-EEEeccccccccCC---CcchHHHHHHHHHhc
Q 043031 240 IK----DFETNE-GEV-VAVYSPVHLSHMIR---KPNCLETFLTELRKI 279 (424)
Q Consensus 240 l~----~l~~~~-~E~-laVN~~~~Lh~l~~---~~~~~~~~L~~ir~L 279 (424)
-. ..++.. .++ .+||-.-.+..... .+...+.++..|++|
T Consensus 134 ~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~~li~~l 182 (184)
T TIGR01626 134 KGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVISLVNGL 182 (184)
T ss_pred cchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 11 145543 366 68887766544322 223345667777654
No 77
>PRK05412 putative nucleotide-binding protein; Reviewed
Probab=41.69 E-value=29 Score=31.79 Aligned_cols=32 Identities=16% Similarity=0.349 Sum_probs=26.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEE
Q 043031 196 LLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFNI 234 (424)
Q Consensus 196 ~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~ 234 (424)
.+|+|| .+.+.|+++-..|.+ ..+++|++|.-
T Consensus 127 ~vRVtg-----KkrDDLQ~viallk~--~d~~~pLQF~N 158 (161)
T PRK05412 127 QVRVTG-----KKRDDLQAVIALLRK--ADLGQPLQFNN 158 (161)
T ss_pred EEEEec-----CCHhHHHHHHHHHHh--ccCCCCceecc
Confidence 589999 588999999888873 48999999963
No 78
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=41.54 E-value=80 Score=30.63 Aligned_cols=64 Identities=16% Similarity=0.115 Sum_probs=48.5
Q ss_pred CchhH-HHHHHHHHhHhHHHHHhhcccccccC-CCChhhHHHHHhcCCCccccCChhHHHHHHHHHHhc
Q 043031 323 CHANR-MTFEEMYAGQHIRNIIASEGEERIFG-HMKIDGWRDLFNRFGLVEAELSSWSLFQAELILRSF 389 (424)
Q Consensus 323 ~s~~R-~~iE~~~lg~eI~niVaceG~~R~ER-~e~~~~W~~r~~~aGF~~~~ls~~~~~qa~~ll~~~ 389 (424)
..++| .++|. -.++|.|+|+....+..-+ |-+-..=...|+.|||..-|+.+ +..|+...++..
T Consensus 88 TaeqR~~m~e~--k~rqIi~~IsRn~IdP~t~~P~Pp~rIe~Ameeakv~id~~K~-ae~Qv~evlK~l 153 (234)
T COG1500 88 TAEQRREMLEE--KKRQIINIISRNAIDPQTKAPHPPARIEKAMEEAKVHIDPFKS-AEEQVQEVLKAL 153 (234)
T ss_pred cHHHHHHHHHH--HHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcCcccCCCCC-HHHHHHHHHHHH
Confidence 33444 55564 6899999999998775554 66666777899999999888875 788888887764
No 79
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=41.33 E-value=37 Score=33.38 Aligned_cols=34 Identities=15% Similarity=0.072 Sum_probs=23.0
Q ss_pred cCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEE
Q 043031 161 SSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITM 201 (424)
Q Consensus 161 ~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~ 201 (424)
.|.+.+||||+ +.+ +. .+|..+++..+.| +-++|
T Consensus 50 ~Ga~~lHvVDL--g~~-n~-~~i~~i~~~~~~~---v~vGG 83 (253)
T TIGR02129 50 DGVKGCHVIML--GPN-ND-DAAKEALHAYPGG---LQVGG 83 (253)
T ss_pred cCCCEEEEEEC--CCC-cH-HHHHHHHHhCCCC---EEEeC
Confidence 58999999999 555 66 5666676654332 44555
No 80
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=39.44 E-value=2.4e+02 Score=24.51 Aligned_cols=21 Identities=14% Similarity=0.110 Sum_probs=16.0
Q ss_pred hHHHHHHHHHhcCCCeEEEEe
Q 043031 268 CLETFLTELRKINPCVMVVIE 288 (424)
Q Consensus 268 ~~~~~L~~ir~L~P~vvvl~E 288 (424)
.+..+++.+|+-+++++++.-
T Consensus 89 ~l~~li~~~~~~~~~vil~~~ 109 (177)
T cd01822 89 NLRQMIETAQARGAPVLLVGM 109 (177)
T ss_pred HHHHHHHHHHHCCCeEEEEec
Confidence 356788888888888887753
No 81
>cd02685 MIT_C MIT_C; domain found C-terminal to MIT (contained within Microtubule Interacting and Trafficking molecules) domains, as well as in some bacterial proteins. The function of this domain is unknown.
Probab=39.08 E-value=1.8e+02 Score=26.42 Aligned_cols=71 Identities=13% Similarity=0.182 Sum_probs=43.5
Q ss_pred CCCeeEEEeccCCCCCChHHHHHHH--HhcCCCCCcceEEEEEeCC-CCCHHHHHHHHHHHHHHHHhCCCceEEEE
Q 043031 162 SAKKIHIIDLATRTGSHCPAIMQAL--ATRQGCPPELLKITMVVGT-TPSKQKFEEIENRLANFAETINLPFPFNI 234 (424)
Q Consensus 162 g~~~VHIIDf~i~~G~QWp~LiqaL--a~R~ggpP~~LRIT~~i~~-~~~~~~l~~tg~rL~~fA~~lgvpFeF~~ 234 (424)
|...|+|.|==|...-|--.||+-+ +-++.++. ..|.-+.++ +...+.-.+.=..|.+=..+.||.|++.-
T Consensus 18 ~~~~I~ieDPYir~~hQi~Nl~~F~El~vk~~~~~--~~i~LvT~~d~~~~~~Q~~~l~~i~~sl~~~gI~~~~~f 91 (148)
T cd02685 18 GVTEITVEDPYIRNFHQIRNFLRFCELVVKPPCEL--KYIHLVTGEDEDNGKQQIEALEEIKQSLASHGVEFTWEF 91 (148)
T ss_pred CceEEEEeCccccchHHHHHHHHHHHHHhcCccce--EEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Confidence 7889999999999999999998844 44443333 455541222 12222222333345555566788877654
No 82
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=37.28 E-value=3.4e+02 Score=25.12 Aligned_cols=105 Identities=14% Similarity=0.142 Sum_probs=56.6
Q ss_pred HHHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCc--eEE
Q 043031 155 AVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLP--FPF 232 (424)
Q Consensus 155 aIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvp--FeF 232 (424)
.+++.++-.+.-+|+|+|.|.|..=..|.+.+ ++. -++++ |+. +...++.+.+++. ..|+. .+|
T Consensus 63 ~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~-----~~~--g~V~~-iD~--~~~~~~~a~~~l~----~~~~~~~v~~ 128 (205)
T PRK13944 63 MMCELIEPRPGMKILEVGTGSGYQAAVCAEAI-----ERR--GKVYT-VEI--VKELAIYAAQNIE----RLGYWGVVEV 128 (205)
T ss_pred HHHHhcCCCCCCEEEEECcCccHHHHHHHHhc-----CCC--CEEEE-EeC--CHHHHHHHHHHHH----HcCCCCcEEE
Confidence 35566654444579999998887433333322 122 37999 874 5666666666664 34543 333
Q ss_pred EEEecCCCcc-c-ccCCCcEEEEeccccccccCCCcchHHHHHHHHHhcCCCeEEEE
Q 043031 233 NISFLTDIKD-F-ETNEGEVVAVYSPVHLSHMIRKPNCLETFLTELRKINPCVMVVI 287 (424)
Q Consensus 233 ~~v~~~~l~~-l-~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L~P~vvvl~ 287 (424)
..- +..+ + ...+=+.+++++.. +++. +. ..+.|+|.-.+++
T Consensus 129 ~~~---d~~~~~~~~~~fD~Ii~~~~~--~~~~------~~---l~~~L~~gG~lvi 171 (205)
T PRK13944 129 YHG---DGKRGLEKHAPFDAIIVTAAA--STIP------SA---LVRQLKDGGVLVI 171 (205)
T ss_pred EEC---CcccCCccCCCccEEEEccCc--chhh------HH---HHHhcCcCcEEEE
Confidence 321 2221 1 12344677777653 4443 12 3466888655544
No 83
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=35.07 E-value=4.5e+02 Score=25.88 Aligned_cols=108 Identities=23% Similarity=0.296 Sum_probs=59.8
Q ss_pred eeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCc--eEEEEEecCCCcc
Q 043031 165 KIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLP--FPFNISFLTDIKD 242 (424)
Q Consensus 165 ~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvp--FeF~~v~~~~l~~ 242 (424)
..+|+|+|.|.|. +.-.|+.+. |. .++|| |+. +...++.+.++. +..|++ .+|..- ++.+
T Consensus 122 ~~~vLDlG~GsG~----i~~~la~~~---~~-~~v~a-vDi--s~~al~~A~~n~----~~~~~~~~i~~~~~---D~~~ 183 (284)
T TIGR03533 122 VKRILDLCTGSGC----IAIACAYAF---PE-AEVDA-VDI--SPDALAVAEINI----ERHGLEDRVTLIQS---DLFA 183 (284)
T ss_pred CCEEEEEeCchhH----HHHHHHHHC---CC-CEEEE-EEC--CHHHHHHHHHHH----HHcCCCCcEEEEEC---chhh
Confidence 3589999999985 455566552 32 68999 874 677777776664 445653 344322 2211
Q ss_pred -cccCCCcEEEEeccccc----cccC----CCc--------ch---HHHHHHH-HHhcCCCeEEEEeee
Q 043031 243 -FETNEGEVVAVYSPVHL----SHMI----RKP--------NC---LETFLTE-LRKINPCVMVVIEVE 290 (424)
Q Consensus 243 -l~~~~~E~laVN~~~~L----h~l~----~~~--------~~---~~~~L~~-ir~L~P~vvvl~E~e 290 (424)
+.-..=+.++.|=++.- .++. .+| +. ...+++. .+-|+|.-.+++|-.
T Consensus 184 ~~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 184 ALPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred ccCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 21112257777754421 1111 011 11 2344443 467899988888865
No 84
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=34.26 E-value=3.8e+02 Score=24.78 Aligned_cols=98 Identities=19% Similarity=0.245 Sum_probs=54.7
Q ss_pred eeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCc-eEEEEEecCCCccc
Q 043031 165 KIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLP-FPFNISFLTDIKDF 243 (424)
Q Consensus 165 ~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvp-FeF~~v~~~~l~~l 243 (424)
.-.|+|+|.|.|. .++ .++.+. |. .++|+ |+. +...++.+.++ ++..|++ ++|..-...++. .
T Consensus 46 g~~VLDiGcGtG~--~al--~la~~~---~~-~~V~g-iD~--s~~~l~~A~~~----~~~~~l~~i~~~~~d~~~~~-~ 109 (187)
T PRK00107 46 GERVLDVGSGAGF--PGI--PLAIAR---PE-LKVTL-VDS--LGKKIAFLREV----AAELGLKNVTVVHGRAEEFG-Q 109 (187)
T ss_pred CCeEEEEcCCCCH--HHH--HHHHHC---CC-CeEEE-EeC--cHHHHHHHHHH----HHHcCCCCEEEEeccHhhCC-C
Confidence 3469999999993 222 233321 32 58999 874 55555555444 4445664 444433222221 1
Q ss_pred ccCCCcEEEEeccccccccCCCcchHHHHHHHH-HhcCCCeEEEEee
Q 043031 244 ETNEGEVVAVYSPVHLSHMIRKPNCLETFLTEL-RKINPCVMVVIEV 289 (424)
Q Consensus 244 ~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvl~E~ 289 (424)
-.+-+.++.|+. ...+.+++.+ +.|+|.-.+++..
T Consensus 110 -~~~fDlV~~~~~----------~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 110 -EEKFDVVTSRAV----------ASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred -CCCccEEEEccc----------cCHHHHHHHHHHhcCCCeEEEEEe
Confidence 123346666541 1245677654 7899988887764
No 85
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=32.92 E-value=3.6e+02 Score=24.10 Aligned_cols=119 Identities=19% Similarity=0.253 Sum_probs=63.1
Q ss_pred HHHHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEE
Q 043031 154 QAVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFN 233 (424)
Q Consensus 154 qaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~ 233 (424)
..+++.+...+.=+|+|+|.|.|. +=-.|+.+ +| ..++|+ ++. +...++-+.+. ++..++.- .+
T Consensus 21 ~lL~~~l~~~~~~~vLDlG~G~G~----i~~~la~~--~~--~~~v~~-vDi--~~~a~~~a~~n----~~~n~~~~-v~ 84 (170)
T PF05175_consen 21 RLLLDNLPKHKGGRVLDLGCGSGV----ISLALAKR--GP--DAKVTA-VDI--NPDALELAKRN----AERNGLEN-VE 84 (170)
T ss_dssp HHHHHHHHHHTTCEEEEETSTTSH----HHHHHHHT--ST--CEEEEE-EES--BHHHHHHHHHH----HHHTTCTT-EE
T ss_pred HHHHHHHhhccCCeEEEecCChHH----HHHHHHHh--CC--CCEEEE-EcC--CHHHHHHHHHH----HHhcCccc-cc
Confidence 455555544455669999999994 22234444 33 378999 874 66666666555 44556653 44
Q ss_pred EEecCCCcccccCCCcEEEEeccccccccCCCc-chHHHHH-HHHHhcCCCeEEEEeee
Q 043031 234 ISFLTDIKDFETNEGEVVAVYSPVHLSHMIRKP-NCLETFL-TELRKINPCVMVVIEVE 290 (424)
Q Consensus 234 ~v~~~~l~~l~~~~~E~laVN~~~~Lh~l~~~~-~~~~~~L-~~ir~L~P~vvvl~E~e 290 (424)
.+..+-.+.+.-..=+.++.|=++ |.-.++. ...+.|+ ..-+-|+|.-......+
T Consensus 85 ~~~~d~~~~~~~~~fD~Iv~NPP~--~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 85 VVQSDLFEALPDGKFDLIVSNPPF--HAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp EEESSTTTTCCTTCEEEEEE---S--BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccccccccceeEEEEccch--hcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 443322222332223578888773 3222111 1234444 45577899876644433
No 86
>PRK00811 spermidine synthase; Provisional
Probab=32.77 E-value=4.4e+02 Score=25.95 Aligned_cols=108 Identities=14% Similarity=0.119 Sum_probs=55.5
Q ss_pred EEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhC-CCceEEEEEecCCCcc-cc
Q 043031 167 HIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETI-NLPFPFNISFLTDIKD-FE 244 (424)
Q Consensus 167 HIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~l-gvpFeF~~v~~~~l~~-l~ 244 (424)
+|+|+|.|.|. +...+.+++ + .-+||+ |+. +...++.+.+.+.++.... . +=.++.+. .+... +.
T Consensus 79 ~VL~iG~G~G~----~~~~~l~~~---~-~~~V~~-VEi--d~~vv~~a~~~~~~~~~~~~~-d~rv~v~~-~Da~~~l~ 145 (283)
T PRK00811 79 RVLIIGGGDGG----TLREVLKHP---S-VEKITL-VEI--DERVVEVCRKYLPEIAGGAYD-DPRVELVI-GDGIKFVA 145 (283)
T ss_pred EEEEEecCchH----HHHHHHcCC---C-CCEEEE-EeC--CHHHHHHHHHHhHHhcccccc-CCceEEEE-CchHHHHh
Confidence 67888888775 344444442 2 248999 874 6666776666665554322 1 11223332 12211 22
Q ss_pred cC--CCcEEEEeccccccccCCCcchHHHHHHHH-HhcCCCeEEEEee
Q 043031 245 TN--EGEVVAVYSPVHLSHMIRKPNCLETFLTEL-RKINPCVMVVIEV 289 (424)
Q Consensus 245 ~~--~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvl~E~ 289 (424)
-. .=+++++++.-. .-....--..+|++.+ +.|+|.-++++-.
T Consensus 146 ~~~~~yDvIi~D~~dp--~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 146 ETENSFDVIIVDSTDP--VGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred hCCCcccEEEECCCCC--CCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 11 225777765321 1000000125677554 7889998887643
No 87
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=31.86 E-value=85 Score=22.36 Aligned_cols=28 Identities=25% Similarity=0.321 Sum_probs=21.5
Q ss_pred HHHhcCCHHHHHHHHHHhcccCCCCCChhhhH
Q 043031 58 EKIGSQQFDRASIFLDHVDKYSSTTGNPVQRL 89 (424)
Q Consensus 58 ~Av~~g~~~~A~~lL~~l~~las~~G~~~qRl 89 (424)
.-++.||.+.|..+|..+-. .|++.||-
T Consensus 8 ayie~Gd~e~Ar~lL~evl~----~~~~~q~~ 35 (44)
T TIGR03504 8 AYIEMGDLEGARELLEEVIE----EGDEAQRQ 35 (44)
T ss_pred HHHHcCChHHHHHHHHHHHH----cCCHHHHH
Confidence 34889999999999998853 56666653
No 88
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=31.64 E-value=82 Score=30.99 Aligned_cols=110 Identities=28% Similarity=0.386 Sum_probs=62.3
Q ss_pred CeeEEEeccCCCCCChHHHHHHHHh--cCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEEe---cC
Q 043031 164 KKIHIIDLATRTGSHCPAIMQALAT--RQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFNISF---LT 238 (424)
Q Consensus 164 ~~VHIIDf~i~~G~QWp~LiqaLa~--R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~v~---~~ 238 (424)
+.|||||+. -.|+-|-.|+.- +-..-|. +|=. ||+ + ..+.+-+.+||++.|.++--+--. ..
T Consensus 36 ngihIIDL~----kT~~~l~~A~~~v~~~~~~~g--~ILf-VgT---K---~~a~~~V~~~A~r~g~~yV~~RwLgG~LT 102 (252)
T COG0052 36 NGIHIIDLQ----KTLERLREAYKFLRRIAANGG--KILF-VGT---K---KQAQEPVKEFAERTGAYYVNGRWLGGMLT 102 (252)
T ss_pred CCcEEEEHH----HHHHHHHHHHHHHHHHHcCCC--EEEE-Eec---h---HHHHHHHHHHHHHhCCceecCcccCcccc
Confidence 789999996 347777666532 1112233 4665 764 1 456778899999999987544321 11
Q ss_pred CCcc-------c---c-cCCCcEEEEeccccccc-----cCCCcchHHHHHHHHHhcC--CCeEEEEeeeCC
Q 043031 239 DIKD-------F---E-TNEGEVVAVYSPVHLSH-----MIRKPNCLETFLTELRKIN--PCVMVVIEVESN 292 (424)
Q Consensus 239 ~l~~-------l---~-~~~~E~laVN~~~~Lh~-----l~~~~~~~~~~L~~ir~L~--P~vvvl~E~ea~ 292 (424)
++.. | . ...++ .+. |.+ +......++.+|.-||.|+ |++++++++..+
T Consensus 103 N~~ti~~si~rl~~lE~~~~~~---~~~---~tKkE~l~l~re~~kL~k~lgGIk~m~~~Pd~l~ViDp~~e 168 (252)
T COG0052 103 NFKTIRKSIKRLKELEKMEEDG---FDG---LTKKEALMLTRELEKLEKSLGGIKDMKGLPDVLFVIDPRKE 168 (252)
T ss_pred CchhHHHHHHHHHHHHHHhhcc---ccc---ccHHHHHHHHHHHHHHHHhhcchhhccCCCCEEEEeCCcHh
Confidence 1111 1 1 00111 000 000 0112345678888899886 999999987643
No 89
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=30.70 E-value=5.3e+02 Score=25.45 Aligned_cols=109 Identities=18% Similarity=0.259 Sum_probs=62.1
Q ss_pred EEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEEecCCCcc-ccc
Q 043031 167 HIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFNISFLTDIKD-FET 245 (424)
Q Consensus 167 HIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~v~~~~l~~-l~~ 245 (424)
||+|+|.|.|..=.. ||.+ +| ..+|+| ++- +.+.++-+.++ |+..|+ -.+..+.. ++.+ ++-
T Consensus 113 ~ilDlGTGSG~iai~----la~~--~~--~~~V~a-~Di--s~~Al~~A~~N----a~~~~l-~~~~~~~~-dlf~~~~~ 175 (280)
T COG2890 113 RILDLGTGSGAIAIA----LAKE--GP--DAEVIA-VDI--SPDALALAREN----AERNGL-VRVLVVQS-DLFEPLRG 175 (280)
T ss_pred cEEEecCChHHHHHH----HHhh--Cc--CCeEEE-EEC--CHHHHHHHHHH----HHHcCC-ccEEEEee-ecccccCC
Confidence 999999999964322 3332 43 368999 874 77778777666 455665 33445543 4432 222
Q ss_pred CCCcEEEEeccccccc---cCC-----C--------cch---HHHHHHHH-HhcCCCeEEEEeeeCCC
Q 043031 246 NEGEVVAVYSPVHLSH---MIR-----K--------PNC---LETFLTEL-RKINPCVMVVIEVESND 293 (424)
Q Consensus 246 ~~~E~laVN~~~~Lh~---l~~-----~--------~~~---~~~~L~~i-r~L~P~vvvl~E~ea~~ 293 (424)
.=+.+|.|=++-=.. +.. + .+. ...+++.+ +-|+|..++++|...+.
T Consensus 176 -~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q 242 (280)
T COG2890 176 -KFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQ 242 (280)
T ss_pred -ceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCc
Confidence 224666676653322 111 1 111 23455533 45688888888877555
No 90
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=30.39 E-value=94 Score=28.82 Aligned_cols=55 Identities=24% Similarity=0.303 Sum_probs=45.8
Q ss_pred HHHHHHHHH-HHHhcCCHHHHHHHHHHhcccCCCCCChhhhHHHHHHHHHHHhhcc
Q 043031 49 LVHLLLLSA-EKIGSQQFDRASIFLDHVDKYSSTTGNPVQRLVHYFSKALRERFNL 103 (424)
Q Consensus 49 L~~LLl~cA-~Av~~g~~~~A~~lL~~l~~las~~G~~~qRla~yF~eAL~~Rl~~ 103 (424)
+..+|+.+. ..+..++...|..++..+..+..|..+-..|+...|.+|+..=..|
T Consensus 127 i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g 182 (220)
T TIGR01716 127 VIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEG 182 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcC
Confidence 556677666 6688899999999999999998877788999999999999765543
No 91
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=29.06 E-value=4.8e+02 Score=24.32 Aligned_cols=78 Identities=22% Similarity=0.302 Sum_probs=44.3
Q ss_pred CeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCc-eEEEEEecCCCcc
Q 043031 164 KKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLP-FPFNISFLTDIKD 242 (424)
Q Consensus 164 ~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvp-FeF~~v~~~~l~~ 242 (424)
+..+|+|+|.|.| .+.-.++.+. | ..++|| ++. +...++.+.+++ +..|++ .+| +.. +..+
T Consensus 87 ~~~~ilDig~G~G----~~~~~l~~~~---~-~~~v~~-iD~--~~~~~~~a~~~~----~~~~~~~~~~--~~~-d~~~ 148 (251)
T TIGR03534 87 GPLRVLDLGTGSG----AIALALAKER---P-DARVTA-VDI--SPEALAVARKNA----ARLGLDNVTF--LQS-DWFE 148 (251)
T ss_pred CCCeEEEEeCcHh----HHHHHHHHHC---C-CCEEEE-EEC--CHHHHHHHHHHH----HHcCCCeEEE--EEC-chhc
Confidence 3458999999988 3445555542 3 258999 874 555565555443 345664 333 321 2222
Q ss_pred -cccCCCcEEEEeccccc
Q 043031 243 -FETNEGEVVAVYSPVHL 259 (424)
Q Consensus 243 -l~~~~~E~laVN~~~~L 259 (424)
+.-..-+.|+.|-++..
T Consensus 149 ~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 149 PLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred cCcCCceeEEEECCCCCc
Confidence 22223367777877643
No 92
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=28.75 E-value=1.7e+02 Score=23.80 Aligned_cols=44 Identities=16% Similarity=0.205 Sum_probs=28.5
Q ss_pred EEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHH
Q 043031 167 HIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLAN 221 (424)
Q Consensus 167 HIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~ 221 (424)
+|+|+|.|.|.. ...++.+. |. .++|+ ++. +...++.+.+++..
T Consensus 22 ~vldlG~G~G~~----~~~l~~~~---~~-~~v~~-vD~--s~~~~~~a~~~~~~ 65 (124)
T TIGR02469 22 VLWDIGAGSGSI----TIEAARLV---PN-GRVYA-IER--NPEALRLIERNARR 65 (124)
T ss_pred EEEEeCCCCCHH----HHHHHHHC---CC-ceEEE-EcC--CHHHHHHHHHHHHH
Confidence 899999998753 44455542 22 58999 875 56666665555433
No 93
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=28.74 E-value=5.2e+02 Score=24.69 Aligned_cols=52 Identities=15% Similarity=0.276 Sum_probs=33.5
Q ss_pred HHHHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHH
Q 043031 154 QAVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENR 218 (424)
Q Consensus 154 qaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~r 218 (424)
+.|++++...+.=.|+|+|.|.|. |-..|+.+. + ++++ |+. +...++.+.++
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~----lt~~L~~~~---~---~v~~-iE~--d~~~~~~l~~~ 70 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGA----LTEPLLKRA---K---KVTA-IEI--DPRLAEILRKL 70 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCH----HHHHHHHhC---C---cEEE-EEC--CHHHHHHHHHH
Confidence 456666654555689999999987 666777663 2 3899 874 45445444333
No 94
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=28.45 E-value=69 Score=34.32 Aligned_cols=57 Identities=23% Similarity=0.352 Sum_probs=43.5
Q ss_pred eCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEEecCCCcccccCCCcEEEEecccccc
Q 043031 203 VGTTPSKQKFEEIENRLANFAETINLPFPFNISFLTDIKDFETNEGEVVAVYSPVHLS 260 (424)
Q Consensus 203 i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~v~~~~l~~l~~~~~E~laVN~~~~Lh 260 (424)
|.+|.=.+.+++.|.||.+-|..-+.||+|-.|...++.-|- -+|-.|+||.-+-++
T Consensus 67 i~D~el~~yv~~~g~rL~~~a~~~~~~f~f~lV~d~~iNAFA-~~Gg~v~vntGLll~ 123 (484)
T COG4783 67 IRDPELEEYVNSLGQRLAAAADLVKTPFTFFLVNDDSINAFA-TPGGYVVVNTGLLLT 123 (484)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCccchhh-cCCceEEEehHHHHh
Confidence 544333568899999999999999999999999755554432 257789999887654
No 95
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=28.20 E-value=5.1e+02 Score=24.39 Aligned_cols=35 Identities=14% Similarity=0.008 Sum_probs=23.7
Q ss_pred eEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHH
Q 043031 166 IHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFE 213 (424)
Q Consensus 166 VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~ 213 (424)
=.|+|.|.|.|. =...||.+ | ..+|| |+. +...++
T Consensus 36 ~rvLd~GCG~G~----da~~LA~~--G----~~V~g-vD~--S~~Ai~ 70 (213)
T TIGR03840 36 ARVFVPLCGKSL----DLAWLAEQ--G----HRVLG-VEL--SEIAVE 70 (213)
T ss_pred CeEEEeCCCchh----HHHHHHhC--C----CeEEE-EeC--CHHHHH
Confidence 489999999883 23346665 2 47999 885 555555
No 96
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=27.79 E-value=86 Score=31.40 Aligned_cols=69 Identities=17% Similarity=0.072 Sum_probs=43.9
Q ss_pred eeEEEeccCCCCCC-----hHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEEe
Q 043031 165 KIHIIDLATRTGSH-----CPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFNISF 236 (424)
Q Consensus 165 ~VHIIDf~i~~G~Q-----Wp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~v~ 236 (424)
.+.=|||||-+|.. |..+.++|+.-...-|. ++|+. --+ ....-+...|-.+.+-|+..|+...+--|.
T Consensus 104 ~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p~-l~vs~-Tlp-~~p~gl~~~g~~~l~~a~~~Gv~~d~VNiM 177 (294)
T cd06543 104 GLTHLDFDIEGGALTDTAAIDRRAQALALLQKEYPD-LKISF-TLP-VLPTGLTPDGLNVLEAAAANGVDLDTVNIM 177 (294)
T ss_pred CCCeEEEeccCCccccchhHHHHHHHHHHHHHHCCC-cEEEE-ecC-CCCCCCChhHHHHHHHHHHcCCCcceeeee
Confidence 36678999987742 56777777653222243 66664 212 223345557788999999999886665544
No 97
>PRK07402 precorrin-6B methylase; Provisional
Probab=26.86 E-value=2.4e+02 Score=25.69 Aligned_cols=111 Identities=11% Similarity=0.155 Sum_probs=57.8
Q ss_pred HHHHHHHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCce
Q 043031 151 AGIQAVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPF 230 (424)
Q Consensus 151 tANqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpF 230 (424)
-..+.+++.+.-.+.=.|+|+|.|.|. +-..++.. .|. -++|+ |+. +...++.+.+++. .+|++
T Consensus 27 ~v~~~l~~~l~~~~~~~VLDiG~G~G~----~~~~la~~--~~~--~~V~~-vD~--s~~~~~~a~~n~~----~~~~~- 90 (196)
T PRK07402 27 EVRLLLISQLRLEPDSVLWDIGAGTGT----IPVEAGLL--CPK--GRVIA-IER--DEEVVNLIRRNCD----RFGVK- 90 (196)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCH----HHHHHHHH--CCC--CEEEE-EeC--CHHHHHHHHHHHH----HhCCC-
Confidence 344555666653344469999999997 22233433 222 48999 885 6666666666554 34543
Q ss_pred EEEEEecCCCcc----cccCCCcEEEEeccccccccCCCcchHHHHHHHH-HhcCCCeEEEEee
Q 043031 231 PFNISFLTDIKD----FETNEGEVVAVYSPVHLSHMIRKPNCLETFLTEL-RKINPCVMVVIEV 289 (424)
Q Consensus 231 eF~~v~~~~l~~----l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvl~E~ 289 (424)
.++.+.. +..+ +.-.+ +.+.+.. ....+.+++.+ +.|+|.-.+++..
T Consensus 91 ~v~~~~~-d~~~~~~~~~~~~-d~v~~~~----------~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 91 NVEVIEG-SAPECLAQLAPAP-DRVCIEG----------GRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred CeEEEEC-chHHHHhhCCCCC-CEEEEEC----------CcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 2232321 2211 21112 2333221 12345566655 5789987666654
No 98
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=26.40 E-value=6.2e+02 Score=24.73 Aligned_cols=49 Identities=35% Similarity=0.462 Sum_probs=31.8
Q ss_pred eEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCc
Q 043031 166 IHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLP 229 (424)
Q Consensus 166 VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvp 229 (424)
.+|+|+|.|.|. +.-+|+.. .|. .++|| ++. +...++.+.++ ++..|+.
T Consensus 116 ~~vLDlG~GsG~----i~l~la~~--~~~--~~v~a-vDi--s~~al~~a~~n----~~~~~~~ 164 (284)
T TIGR00536 116 LHILDLGTGSGC----IALALAYE--FPN--AEVIA-VDI--SPDALAVAEEN----AEKNQLE 164 (284)
T ss_pred CEEEEEeccHhH----HHHHHHHH--CCC--CEEEE-EEC--CHHHHHHHHHH----HHHcCCC
Confidence 589999999994 33445544 222 58999 874 66667666655 3445554
No 99
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=26.20 E-value=5.6e+02 Score=24.20 Aligned_cols=102 Identities=17% Similarity=0.103 Sum_probs=54.2
Q ss_pred eeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEE-----------E
Q 043031 165 KIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPF-----------N 233 (424)
Q Consensus 165 ~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF-----------~ 233 (424)
.-.|+|.|.|.|- =+..||.+ | ..+|| |+. +...++. +++..|++.+. .
T Consensus 38 ~~rvL~~gCG~G~----da~~LA~~--G----~~V~a-vD~--s~~Ai~~-------~~~~~~l~~~~~~~~~~~~~~~~ 97 (218)
T PRK13255 38 GSRVLVPLCGKSL----DMLWLAEQ--G----HEVLG-VEL--SELAVEQ-------FFAENGLTPQTRQSGEFEHYQAG 97 (218)
T ss_pred CCeEEEeCCCChH----hHHHHHhC--C----CeEEE-Ecc--CHHHHHH-------HHHHcCCCccccccccccccccC
Confidence 3478999999883 34446765 2 57999 985 5555553 23444554321 0
Q ss_pred EEe--cCCCcccccCC-CcEEEEeccccccccCCCcchHHHHHHHHHh-cCCC--eEEEEe
Q 043031 234 ISF--LTDIKDFETNE-GEVVAVYSPVHLSHMIRKPNCLETFLTELRK-INPC--VMVVIE 288 (424)
Q Consensus 234 ~v~--~~~l~~l~~~~-~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~-L~P~--vvvl~E 288 (424)
.|. ..++.++.... +..=.|.-.-.+||+. ++.+..++..|.+ |+|. +++++.
T Consensus 98 ~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~--~~~R~~~~~~l~~lL~pgG~~~l~~~ 156 (218)
T PRK13255 98 EITIYCGDFFALTAADLADVDAVYDRAALIALP--EEMRERYVQQLAALLPAGCRGLLVTL 156 (218)
T ss_pred ceEEEECcccCCCcccCCCeeEEEehHhHhhCC--HHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 111 12232222111 2222233223467774 4567888887755 8999 555544
No 100
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=26.08 E-value=38 Score=35.04 Aligned_cols=13 Identities=46% Similarity=0.667 Sum_probs=10.5
Q ss_pred CCCeeEEEeccCC
Q 043031 162 SAKKIHIIDLATR 174 (424)
Q Consensus 162 g~~~VHIIDf~i~ 174 (424)
.+..|||||||+.
T Consensus 164 ~~n~IhiiDFGmA 176 (449)
T KOG1165|consen 164 DANVIHIIDFGMA 176 (449)
T ss_pred CCceEEEEeccch
Confidence 4567999999974
No 101
>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane
Probab=25.63 E-value=1.4e+02 Score=22.59 Aligned_cols=39 Identities=18% Similarity=0.185 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhhhhcCCCchhHHHHHHHHHhHhHHHHHhhcc
Q 043031 306 LFHFGALFDCLEVCMNRCHANRMTFEEMYAGQHIRNIIASEG 347 (424)
Q Consensus 306 L~~YsalFDsLda~~~~~s~~R~~iE~~~lg~eI~niVaceG 347 (424)
...|..+++.|+ .+|.++.-|..+|. +-++-.+||..++
T Consensus 8 ~~lY~~~L~~L~-~~P~~a~YR~~tE~--it~~Rl~iv~~~~ 46 (57)
T PF04716_consen 8 ISLYNKTLKALK-KIPEDAAYRQYTEA--ITKHRLKIVEEEE 46 (57)
T ss_pred HHHHHHHHHHHH-hCCCccHHHHHHHH--HHHHHHHHHHccc
Confidence 356999999999 68999999999998 4555667777653
No 102
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=25.42 E-value=3.6e+02 Score=24.67 Aligned_cols=109 Identities=11% Similarity=0.181 Sum_probs=57.2
Q ss_pred eeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEEecCCCccc-
Q 043031 165 KIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFNISFLTDIKDF- 243 (424)
Q Consensus 165 ~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~v~~~~l~~l- 243 (424)
.--|+|+|.|.|. ++-.||.+. |. ..++| |+. +...++.+.+++. ..|++ ..+.+. .+..++
T Consensus 17 ~~~ilDiGcG~G~----~~~~la~~~---p~-~~v~g-vD~--~~~~l~~a~~~~~----~~~l~-ni~~i~-~d~~~~~ 79 (194)
T TIGR00091 17 APLHLEIGCGKGR----FLIDMAKQN---PD-KNFLG-IEI--HTPIVLAANNKAN----KLGLK-NLHVLC-GDANELL 79 (194)
T ss_pred CceEEEeCCCccH----HHHHHHHhC---CC-CCEEE-EEe--eHHHHHHHHHHHH----HhCCC-CEEEEc-cCHHHHH
Confidence 3479999999885 555666652 32 58999 874 6666666655543 34543 223332 233221
Q ss_pred -c-cCCC--cEEEEeccccccccCCCc--chHHHHHHHH-HhcCCCeEEEEeee
Q 043031 244 -E-TNEG--EVVAVYSPVHLSHMIRKP--NCLETFLTEL-RKINPCVMVVIEVE 290 (424)
Q Consensus 244 -~-~~~~--E~laVN~~~~Lh~l~~~~--~~~~~~L~~i-r~L~P~vvvl~E~e 290 (424)
. ..++ +.+.+|++.--+.-.... -..+.+|+.+ +.|+|.-.+.+.-+
T Consensus 80 ~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 80 DKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred HhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 1 1122 356666543211100000 0024677765 67799877766543
No 103
>PTZ00063 histone deacetylase; Provisional
Probab=25.07 E-value=52 Score=34.94 Aligned_cols=59 Identities=5% Similarity=-0.084 Sum_probs=34.3
Q ss_pred cEEEEeccccccc------cCCCcchHHHHHHHHHhcCCCeEEEEeeeCCCCCCchHHHHHHHHHHHHHHH
Q 043031 249 EVVAVYSPVHLSH------MIRKPNCLETFLTELRKINPCVMVVIEVESNDNLQTFEDRFFGTLFHFGALF 313 (424)
Q Consensus 249 E~laVN~~~~Lh~------l~~~~~~~~~~L~~ir~L~P~vvvl~E~ea~~ns~~F~~RF~eaL~~YsalF 313 (424)
|+|+|.|-+=-|. +.-+......+++.+++++..++++.|- .+|. .....++.|..++.
T Consensus 252 d~IvvqaG~D~~~~DpLg~l~Lt~~g~~~~~~~~~~~~~pil~l~gG--GY~~----~~lar~w~~~t~~~ 316 (436)
T PTZ00063 252 GAIVLQCGADSLTGDRLGRFNLTIKGHAACVEFVRSLNIPLLVLGGG--GYTI----RNVARCWAYETGVI 316 (436)
T ss_pred CEEEEECCccccCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEeCc--cCCc----hHHHHHHHHHHHHH
Confidence 5888888764332 1111222346788889998877777653 3331 33456666666655
No 104
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=24.87 E-value=3.6e+02 Score=25.51 Aligned_cols=70 Identities=20% Similarity=0.335 Sum_probs=50.2
Q ss_pred hcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEEe
Q 043031 160 VSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFNISF 236 (424)
Q Consensus 160 ~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~v~ 236 (424)
+.+.+.|-+||=.|+.|.=--.+|++|-... |-+..=+..++++ .+ .+-..+..+.++.+|+|.+|..+.
T Consensus 118 l~~~~~lVLVDDEiSTG~T~lnli~al~~~~--p~~~yvvasL~d~-~~----~~~~~~~~~~~~~lgi~i~~vsL~ 187 (191)
T PF15609_consen 118 LRNARTLVLVDDEISTGNTFLNLIRALHAKY--PRKRYVVASLLDW-RS----EEDRARFEALAEELGIPIDVVSLL 187 (191)
T ss_pred hcCCCCEEEEecCccchHHHHHHHHHHHHhC--CCceEEEEEEeeC-CC----HHHHHHHHHHHHHcCCcEEEEEee
Confidence 3447799999999999999999999997763 3333333332444 22 234567788899999999988774
No 105
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=24.47 E-value=2.9e+02 Score=24.93 Aligned_cols=43 Identities=26% Similarity=0.419 Sum_probs=27.7
Q ss_pred eEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHH
Q 043031 166 IHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRL 219 (424)
Q Consensus 166 VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL 219 (424)
-.|+|+|.|.|. +--.++.+ +| . .++|+ |+. +...++.+.++.
T Consensus 33 ~~vLDiG~G~G~----~~~~la~~--~~-~-~~v~~-vD~--s~~~~~~a~~n~ 75 (187)
T PRK08287 33 KHLIDVGAGTGS----VSIEAALQ--FP-S-LQVTA-IER--NPDALRLIKENR 75 (187)
T ss_pred CEEEEECCcCCH----HHHHHHHH--CC-C-CEEEE-EEC--CHHHHHHHHHHH
Confidence 369999999884 33344544 33 2 68999 875 566666555444
No 106
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=24.47 E-value=1.3e+02 Score=24.79 Aligned_cols=68 Identities=22% Similarity=0.396 Sum_probs=41.0
Q ss_pred CCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEEecCCCcc-cccCCCcEEE
Q 043031 174 RTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFNISFLTDIKD-FETNEGEVVA 252 (424)
Q Consensus 174 ~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~v~~~~l~~-l~~~~~E~la 252 (424)
|.|.-....+.++... .| .++|+|+.+. +. .+..++++.+|++ -| .++++ +.-..=++++
T Consensus 7 G~G~~g~~~~~~~~~~---~~-~~~v~~v~d~--~~-------~~~~~~~~~~~~~-~~-----~~~~~ll~~~~~D~V~ 67 (120)
T PF01408_consen 7 GAGSIGRRHLRALLRS---SP-DFEVVAVCDP--DP-------ERAEAFAEKYGIP-VY-----TDLEELLADEDVDAVI 67 (120)
T ss_dssp STSHHHHHHHHHHHHT---TT-TEEEEEEECS--SH-------HHHHHHHHHTTSE-EE-----SSHHHHHHHTTESEEE
T ss_pred CCcHHHHHHHHHHHhc---CC-CcEEEEEEeC--CH-------HHHHHHHHHhccc-ch-----hHHHHHHHhhcCCEEE
Confidence 4454455666777665 23 3799995553 32 3555669999999 22 34544 3323345888
Q ss_pred Eecccccc
Q 043031 253 VYSPVHLS 260 (424)
Q Consensus 253 VN~~~~Lh 260 (424)
|..+...|
T Consensus 68 I~tp~~~h 75 (120)
T PF01408_consen 68 IATPPSSH 75 (120)
T ss_dssp EESSGGGH
T ss_pred EecCCcch
Confidence 88776665
No 107
>PRK14967 putative methyltransferase; Provisional
Probab=23.26 E-value=6.1e+02 Score=23.61 Aligned_cols=104 Identities=16% Similarity=0.134 Sum_probs=53.8
Q ss_pred eEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEEecCCCcc-cc
Q 043031 166 IHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETINLPFPFNISFLTDIKD-FE 244 (424)
Q Consensus 166 VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~~v~~~~l~~-l~ 244 (424)
-+|+|+|.|.|.- ...++.. + . -++|+ |+. +...++.+.+++ +..|+..++.. .++.+ +.
T Consensus 38 ~~vLDlGcG~G~~----~~~la~~--~-~--~~v~~-vD~--s~~~l~~a~~n~----~~~~~~~~~~~---~d~~~~~~ 98 (223)
T PRK14967 38 RRVLDLCTGSGAL----AVAAAAA--G-A--GSVTA-VDI--SRRAVRSARLNA----LLAGVDVDVRR---GDWARAVE 98 (223)
T ss_pred CeEEEecCCHHHH----HHHHHHc--C-C--CeEEE-EEC--CHHHHHHHHHHH----HHhCCeeEEEE---Cchhhhcc
Confidence 5899999998872 2234443 2 2 37999 874 555565554444 33455433322 23332 22
Q ss_pred cCCCcEEEEeccccccccCCC------------cc---hHHHHHH-HHHhcCCCeEEEEe
Q 043031 245 TNEGEVVAVYSPVHLSHMIRK------------PN---CLETFLT-ELRKINPCVMVVIE 288 (424)
Q Consensus 245 ~~~~E~laVN~~~~Lh~l~~~------------~~---~~~~~L~-~ir~L~P~vvvl~E 288 (424)
-..=+.++.|-++.-++-... .+ ..+.+++ ..+-|+|.-.+++.
T Consensus 99 ~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 99 FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 112257777876643321100 00 1344555 44778998666554
No 108
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=23.19 E-value=1.9e+02 Score=28.21 Aligned_cols=50 Identities=12% Similarity=0.301 Sum_probs=31.8
Q ss_pred HHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHH
Q 043031 156 VIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENR 218 (424)
Q Consensus 156 IleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~r 218 (424)
|++.+.-.+.-+|+|+|.|.|. +-..|+.+ ++ ++|| |+. +...++.+.++
T Consensus 34 i~~~l~~~~~~~VLEiG~G~G~----lt~~L~~~--~~----~v~a-vE~--d~~~~~~~~~~ 83 (272)
T PRK00274 34 IVDAAGPQPGDNVLEIGPGLGA----LTEPLLER--AA----KVTA-VEI--DRDLAPILAET 83 (272)
T ss_pred HHHhcCCCCcCeEEEeCCCccH----HHHHHHHh--CC----cEEE-EEC--CHHHHHHHHHh
Confidence 3444443445689999999884 66677766 32 6899 875 45555554443
No 109
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=22.92 E-value=7.3e+02 Score=24.35 Aligned_cols=113 Identities=10% Similarity=0.156 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhhc--CCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHhC
Q 043031 149 VFAGIQAVIENVS--SAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLANFAETI 226 (424)
Q Consensus 149 ~~tANqaIleA~~--g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~~fA~~l 226 (424)
+..+.+..++.++ ..+.-.|+|+|.|.|. |-.+++.. |+ -+++| |+. +...++.+.+++. ..
T Consensus 142 ~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~----lai~aa~~--g~---~~V~a-vDi--d~~al~~a~~n~~----~n 205 (288)
T TIGR00406 142 THPTTSLCLEWLEDLDLKDKNVIDVGCGSGI----LSIAALKL--GA---AKVVG-IDI--DPLAVESARKNAE----LN 205 (288)
T ss_pred CCHHHHHHHHHHHhhcCCCCEEEEeCCChhH----HHHHHHHc--CC---CeEEE-EEC--CHHHHHHHHHHHH----Hc
Confidence 3344555565553 2233579999999984 33445543 22 27999 874 6667776665543 34
Q ss_pred CCceEEEEEecCCCcccccCCCcEEEEeccccccccCCCcchHHHHHHH-HHhcCCCeEEEE
Q 043031 227 NLPFPFNISFLTDIKDFETNEGEVVAVYSPVHLSHMIRKPNCLETFLTE-LRKINPCVMVVI 287 (424)
Q Consensus 227 gvpFeF~~v~~~~l~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~-ir~L~P~vvvl~ 287 (424)
++...+..+.. +.....-..=+.|+.|... ..+..++.. .+.|+|.-.++.
T Consensus 206 ~~~~~~~~~~~-~~~~~~~~~fDlVvan~~~---------~~l~~ll~~~~~~LkpgG~li~ 257 (288)
T TIGR00406 206 QVSDRLQVKLI-YLEQPIEGKADVIVANILA---------EVIKELYPQFSRLVKPGGWLIL 257 (288)
T ss_pred CCCcceEEEec-ccccccCCCceEEEEecCH---------HHHHHHHHHHHHHcCCCcEEEE
Confidence 55543333321 1111111112456556431 123345544 477899866655
No 110
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=22.65 E-value=3.6e+02 Score=25.72 Aligned_cols=48 Identities=25% Similarity=0.368 Sum_probs=31.5
Q ss_pred CCCeeEEEeccCCCCCChHHHHHHHHhcCCCCCcceEEEEEeCCCCCHHHHHHHHHHHH
Q 043031 162 SAKKIHIIDLATRTGSHCPAIMQALATRQGCPPELLKITMVVGTTPSKQKFEEIENRLA 220 (424)
Q Consensus 162 g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~~LRIT~~i~~~~~~~~l~~tg~rL~ 220 (424)
..+..+|+|+|.|.|. +...|+... | ..++|| ++. +...++.+.+++.
T Consensus 106 ~~~~~~vLDiG~GsG~----~~~~la~~~---~-~~~v~~-iDi--s~~~l~~a~~n~~ 153 (275)
T PRK09328 106 LKEPLRVLDLGTGSGA----IALALAKER---P-DAEVTA-VDI--SPEALAVARRNAK 153 (275)
T ss_pred ccCCCEEEEEcCcHHH----HHHHHHHHC---C-CCEEEE-EEC--CHHHHHHHHHHHH
Confidence 3456789999999984 344444432 3 258999 874 6666666666554
No 111
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.62 E-value=76 Score=32.56 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=26.6
Q ss_pred cEEEEeccccccccCCCc--chHHH-HHHHHHhcCCCeEEEE-eeeCCCCC
Q 043031 249 EVVAVYSPVHLSHMIRKP--NCLET-FLTELRKINPCVMVVI-EVESNDNL 295 (424)
Q Consensus 249 E~laVN~~~~Lh~l~~~~--~~~~~-~L~~ir~L~P~vvvl~-E~ea~~ns 295 (424)
|--.||.++ .+..-++. ...+. ++..++.-+|++|++. =.|+..+.
T Consensus 206 ~g~~vNiPL-p~g~~d~~y~~a~~~~v~~~~~~f~PdlvivsaG~D~h~~D 255 (340)
T COG0123 206 EGNNVNIPL-PPGTGDDSYLEALEEIVLPLLEEFKPDLVIVSAGFDAHRGD 255 (340)
T ss_pred ccceEeeec-CCCCCcHHHHHHHHHHHHHHHHhcCCCEEEEecCcccCCCC
Confidence 567788775 22222110 12334 6678888999998887 34554443
No 112
>PF06711 DUF1198: Protein of unknown function (DUF1198); InterPro: IPR009587 This family consists of several bacterial proteins of around 150 residues in length which are specific to Escherichia coli, Salmonella species and Yersinia pestis. The function of this family is unknown.
Probab=22.61 E-value=1e+02 Score=27.73 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=26.2
Q ss_pred CChhhHHHHHhcCCCccccCChhHHHHHHHHHHhcC
Q 043031 355 MKIDGWRDLFNRFGLVEAELSSWSLFQAELILRSFA 390 (424)
Q Consensus 355 e~~~~W~~r~~~aGF~~~~ls~~~~~qa~~ll~~~~ 390 (424)
+.+..|++.+.+|||.| |++..-+.-|-..++...
T Consensus 89 ~Nl~~W~~~L~ka~l~~-~it~~q~~lAl~flrele 123 (148)
T PF06711_consen 89 ENLQRWRRILQKAGLSP-PITDEQVRLALGFLRELE 123 (148)
T ss_pred HHHHHHHHHHHHcCCCC-CCCHHHHHHHHHHHHHcC
Confidence 45678999999999987 888876666655555543
No 113
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=22.57 E-value=2.7e+02 Score=25.33 Aligned_cols=90 Identities=17% Similarity=0.233 Sum_probs=51.7
Q ss_pred HHHHHHHhcCChhhhHH----HHHHHHHHhhhcCCCeeEEEeccCCCCCChHHHHHHHHhcC--CCCCcc-eEEEEE---
Q 043031 133 QALIACYQKVPFYQVTV----FAGIQAVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQ--GCPPEL-LKITMV--- 202 (424)
Q Consensus 133 ~a~~~~~e~~P~~kfa~----~tANqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~--ggpP~~-LRIT~~--- 202 (424)
.++..+++.+||..-+. |..-.++++++.. +..+..|...++.|...| |+++.. =.+|..
T Consensus 11 ~~l~~~~e~~~W~~~~~~~RPf~s~~~L~~a~~~----------~~~~~~~~~~~~~l~~HP~lg~~~~~~~~~~~~S~~ 80 (158)
T TIGR03180 11 ATLMECCAIPAWARTLVAARPFASAEALLAAADQ----------AWQNLSEQDLFEALAGHPRIGEKPAGQAAYAATSRR 80 (158)
T ss_pred HHHHHhccChHHHHHHHHcCCCCCHHHHHHHHHH----------HHHcCCHHHHHHHHHhCCcccCccccccchhhhhHH
Confidence 46677788888874222 2233455555432 234667788888887765 343310 011210
Q ss_pred ----eCCCCCHHHHHHHHHHHHHHHHhCCCceEEE
Q 043031 203 ----VGTTPSKQKFEEIENRLANFAETINLPFPFN 233 (424)
Q Consensus 203 ----i~~~~~~~~l~~tg~rL~~fA~~lgvpFeF~ 233 (424)
++. .+.+..+...+--.+|-+++|.||-..
T Consensus 81 EQagl~~-~~~~~~~~L~~lN~~Y~~kFGfpFii~ 114 (158)
T TIGR03180 81 EQAGVDG-ADEETRAALLEGNAAYEEKFGRIFLIR 114 (158)
T ss_pred HHhcccC-CCHHHHHHHHHHHHHHHHHCCCeEEEe
Confidence 111 244566667777788999999998654
No 114
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=20.77 E-value=1.9e+02 Score=24.18 Aligned_cols=34 Identities=12% Similarity=0.146 Sum_probs=24.4
Q ss_pred CcEEEEeccccccccCCCcchHHHHHHHHHhcCCCeEEEE
Q 043031 248 GEVVAVYSPVHLSHMIRKPNCLETFLTELRKINPCVMVVI 287 (424)
Q Consensus 248 ~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L~P~vvvl~ 287 (424)
+..-+....+..| +...++...|+.++|+-|+=+
T Consensus 72 ~~~~~~~VPYSeH------SSf~EL~~Fv~~l~P~~IiPt 105 (110)
T PF07522_consen 72 GNVRIYRVPYSEH------SSFSELKEFVSFLKPKKIIPT 105 (110)
T ss_pred CCceEEEEecccC------CCHHHHHHHHHhcCCcEEEcc
Confidence 3455555556555 557899999999999987643
No 115
>PTZ00346 histone deacetylase; Provisional
Probab=20.23 E-value=76 Score=33.67 Aligned_cols=60 Identities=2% Similarity=-0.111 Sum_probs=36.3
Q ss_pred cEEEEecccccccc------CCCcchHHHHHHHHHhcCCCeEEEEeeeCCCCCCchHHHHHHHHHHHHHHHH
Q 043031 249 EVVAVYSPVHLSHM------IRKPNCLETFLTELRKINPCVMVVIEVESNDNLQTFEDRFFGTLFHFGALFD 314 (424)
Q Consensus 249 E~laVN~~~~Lh~l------~~~~~~~~~~L~~ir~L~P~vvvl~E~ea~~ns~~F~~RF~eaL~~YsalFD 314 (424)
|.|+|.|-+=-|.- .-+......+.+.+++++.+++++.|- .+|. ....+++.|..+++-
T Consensus 270 dlIvvsaG~Da~~~DpLg~l~LT~~g~~~~~~~l~~~~~plv~vleG--GY~~----~~lar~w~~~t~~l~ 335 (429)
T PTZ00346 270 DAIVLQCGADSLAGDRLGLLNLSSFGHGQCVQAVRDLGIPMLALGGG--GYTI----RNVAKLWAYETSILT 335 (429)
T ss_pred CEEEEECCccCCCCCCCCCceeCHHHHHHHHHHHHhcCCCEEEEeCC--cCCc----cHHHHHHHHHHHHHc
Confidence 47777777644431 112233456778888888877776654 3442 346677777777743
Done!