BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043034
(197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AEC|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
pdb|4AEC|B Chain B, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
Length = 430
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 34/45 (75%), Gaps = 5/45 (11%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
M+ DAE KG I+PGKS+L+E TS NTGIGLAF IAA RGY+
Sbjct: 161 MVTDAEQKGFISPGKSVLVEPTSGNTGIGLAF-----IAASRGYR 200
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 54/146 (36%), Gaps = 46/146 (31%)
Query: 54 LHHSEYVVLSHVVMGKHLIQA------------SCHEYCFQVSSEEAIETAQQLAHKEGL 101
+ +E +LS G H IQ + +SSEEAIETA+QLA KEGL
Sbjct: 313 VEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGL 372
Query: 102 LVGXXXXXXXXXXXXXXXXPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEAC 161
+VG PEN LI V
Sbjct: 373 MVGISSGAAAAAAIKVAKRPENAGKLIAV------------------------------- 401
Query: 162 HQFLLPSGGERYLSTELFDSITHEAE 187
+ PS GERYLST LF SI E E
Sbjct: 402 ---VFPSFGERYLSTPLFQSIREEVE 424
>pdb|1Z7W|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana
Length = 322
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 33/45 (73%), Gaps = 5/45 (11%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
MI DAE KGLI PG+S+LIE TS NTG+GLAF AA +GYK
Sbjct: 53 MISDAEKKGLIKPGESVLIEPTSGNTGVGLAF-----TAAAKGYK 92
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 55/142 (38%), Gaps = 46/142 (32%)
Query: 58 EYVVLSHVVMGKHLIQASCHEY------------CFQVSSEEAIETAQQLAHKEGLLVGX 105
E +LS G H IQ + QVSS+E+I+ A+QLA KEGLLVG
Sbjct: 209 ESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGI 268
Query: 106 XXXXXXXXXXXXXXXPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFL 165
PEN + KL+ + +
Sbjct: 269 SSGAAAAAAIKLAQRPEN----------AGKLFVA------------------------I 294
Query: 166 LPSGGERYLSTELFDSITHEAE 187
PS GERYLST LFD+ EAE
Sbjct: 295 FPSFGERYLSTVLFDATRKEAE 316
>pdb|1Z7Y|A Chain A, Crystal Structure Of The Arabidopsis Thaliana
O-Acetylserine Sulfhydrylase K46a Mutant
Length = 322
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 33/45 (73%), Gaps = 5/45 (11%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
MI DAE KGLI PG+S+LIE TS NTG+GLAF AA +GYK
Sbjct: 53 MISDAEKKGLIKPGESVLIEPTSGNTGVGLAF-----TAAAKGYK 92
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 55/142 (38%), Gaps = 46/142 (32%)
Query: 58 EYVVLSHVVMGKHLIQA------------SCHEYCFQVSSEEAIETAQQLAHKEGLLVGX 105
E +LS G H IQ + QVSS+E+I+ A+QLA KEGLLVG
Sbjct: 209 ESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGI 268
Query: 106 XXXXXXXXXXXXXXXPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFL 165
PEN + KL+ + +
Sbjct: 269 SSGAAAAAAIKLAQRPEN----------AGKLFVA------------------------I 294
Query: 166 LPSGGERYLSTELFDSITHEAE 187
PS GERYLST LFD+ EAE
Sbjct: 295 FPSFGERYLSTVLFDATRKEAE 316
>pdb|2ISQ|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana In Complex With C-Terminal Peptide
From Arabidopsis Serine Acetyltransferase
Length = 320
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 33/45 (73%), Gaps = 5/45 (11%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
MI DAE KGLI PG+S+LIE TS NTG+GLAF AA +GYK
Sbjct: 51 MISDAEKKGLIKPGESVLIEPTSGNTGVGLAF-----TAAAKGYK 90
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 55/142 (38%), Gaps = 46/142 (32%)
Query: 58 EYVVLSHVVMGKHLIQASCHEY------------CFQVSSEEAIETAQQLAHKEGLLVGX 105
E +LS G H IQ + QVSS+E+I+ A+QLA KEGLLVG
Sbjct: 207 ESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGI 266
Query: 106 XXXXXXXXXXXXXXXPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFL 165
PEN + KL+ + +
Sbjct: 267 SSGAAAAAAIKLAQRPEN----------AGKLFVA------------------------I 292
Query: 166 LPSGGERYLSTELFDSITHEAE 187
PS GERYLST LFD+ EAE
Sbjct: 293 FPSFGERYLSTVLFDATRKEAE 314
>pdb|3VC3|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|E Chain E, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|F Chain F, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
Length = 344
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 33/45 (73%), Gaps = 5/45 (11%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
MI DAE+K LITPGK+ LIE TS N GI +AF +AA++GYK
Sbjct: 73 MITDAEEKNLITPGKTTLIEPTSGNMGISMAF-----MAAMKGYK 112
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 48/125 (38%), Gaps = 34/125 (27%)
Query: 71 LIQASCHEYCFQVSSEEAIETAQQLAHKEGLLVGXXXXXXXXXXXXXXXXPENDRILIVV 130
++ E +VSSE+A+ A+ LA KEGL+VG PEN LIV
Sbjct: 254 ILDLDVMEKVLEVSSEDAVNMARVLALKEGLMVGISSGANTVAALRLAQLPENKGKLIV- 312
Query: 131 SLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAETCL 190
++H PS GERYLS+ LF + EAE
Sbjct: 313 -------------------------TVH--------PSFGERYLSSVLFQELRQEAENMQ 339
Query: 191 LIQVS 195
+ V
Sbjct: 340 PVAVD 344
>pdb|3VBE|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
Length = 344
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 33/45 (73%), Gaps = 5/45 (11%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
MI DAE+K LITPGK+ LIE TS N GI +AF +AA++GYK
Sbjct: 73 MITDAEEKNLITPGKTTLIEPTSGNMGISMAF-----MAAMKGYK 112
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 48/125 (38%), Gaps = 34/125 (27%)
Query: 71 LIQASCHEYCFQVSSEEAIETAQQLAHKEGLLVGXXXXXXXXXXXXXXXXPENDRILIVV 130
++ E +VSSE+A+ A+ LA KEGL+VG PEN LIV
Sbjct: 254 ILDLDVMEKVLEVSSEDAVNMARVLALKEGLMVGISSGANTVAALRLAQLPENKGKLIV- 312
Query: 131 SLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAETCL 190
++H PS GERYLS+ LF + EAE
Sbjct: 313 -------------------------TVH--------PSFGERYLSSVLFQELRQEAENMQ 339
Query: 191 LIQVS 195
+ V
Sbjct: 340 PVAVD 344
>pdb|1VE1|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase
pdb|2ECO|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Methylvalerate
pdb|2ECQ|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 3-Hydroxylactate
pdb|2EFY|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
pdb|2EFY|B Chain B, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
Length = 304
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 1 MIKDAEDKGLITPGKS-ILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEY 59
MIKDAE++G++ PG +++E TS NTGIGLA IAA RGY+ +
Sbjct: 47 MIKDAEERGILRPGSGQVIVEPTSGNTGIGLAM-----IAASRGYRLILTMPAQMSEERK 101
Query: 60 VVLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQLA 96
VL G L+ + E + EEA+ ++L
Sbjct: 102 RVLK--AFGAELV-LTDPERRMLAAREEALRLKEELG 135
>pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|B Chain B, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|C Chain C, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|D Chain D, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|E Chain E, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|F Chain F, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
Length = 435
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 30/45 (66%), Gaps = 6/45 (13%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
MI+DAE G + PG +I IE TS NTGIGLA AAVRGY+
Sbjct: 148 MIEDAERDGTLKPGDTI-IEPTSGNTGIGLAL-----AAAVRGYR 186
>pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|B Chain B, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|C Chain C, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|D Chain D, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|E Chain E, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|F Chain F, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
Length = 363
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 30/45 (66%), Gaps = 6/45 (13%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
MI+DAE G + PG +I IE TS NTGIGLA AAVRGY+
Sbjct: 83 MIEDAERDGTLKPGDTI-IEPTSGNTGIGLAL-----AAAVRGYR 121
>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila
pdb|3PC3|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Aminoacrylate
pdb|3PC4|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Serine
Length = 527
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYV 60
M++DAE++GL+ PG +I IE TS NTGIGLA AV+GYK + + +
Sbjct: 100 MVQDAEEQGLLKPGYTI-IEPTSGNTGIGLAM-----ACAVKGYKCIIVMPEKMSNEKVS 153
Query: 61 VLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQL 95
L +G +I+ E + S E I AQQL
Sbjct: 154 ALR--TLGAKIIRTPT-EAAYD-SPEGLIYVAQQL 184
>pdb|2BHT|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase B
Length = 303
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 17/96 (17%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYV 60
MI +AE +G I PG +LIE TS NTGI LA IAA++GY+ ++
Sbjct: 48 MIVEAEKRGRIKPG-DVLIEATSGNTGIALAM-----IAALKGYRMKLLMPDNMSQERRA 101
Query: 61 VLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQLA 96
+ G LI V+ E+ +E A+ LA
Sbjct: 102 AMR--AYGAELI---------LVTKEQGMEGARDLA 126
>pdb|1D6S|A Chain A, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
pdb|1D6S|B Chain B, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
Length = 322
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 6/45 (13%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
MI DAE +G++ PG L+E T+ NTGI LA+ +AA RGYK
Sbjct: 48 MIWDAEKRGVLKPGVE-LVEPTNGNTGIALAY-----VAAARGYK 86
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 34/105 (32%)
Query: 83 VSSEEAIETAQQLAHKEGLLVGXXXXXXXXXXXXXXXXPENDRILIVVSLISYKLYFSFC 142
+++EEAI TA++L +EG+L G V + + + SF
Sbjct: 249 ITNEEAISTARRLMEEEGILAGISSGAA------------------VAAALKLQEDESFT 290
Query: 143 INSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAE 187
++V +LPS GERYLST LF + E E
Sbjct: 291 NKNIV----------------VILPSSGERYLSTALFADLFTEKE 319
>pdb|1OAS|A Chain A, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1OAS|B Chain B, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1FCJ|A Chain A, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|B Chain B, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|C Chain C, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|D Chain D, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
Length = 322
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 6/45 (13%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
MI DAE +G++ PG L+E T+ NTGI LA+ +AA RGYK
Sbjct: 48 MIWDAEKRGVLKPGVE-LVEPTNGNTGIALAY-----VAAARGYK 86
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 34/105 (32%)
Query: 83 VSSEEAIETAQQLAHKEGLLVGXXXXXXXXXXXXXXXXPENDRILIVVSLISYKLYFSFC 142
+++EEAI TA++L +EG+L G V + + + SF
Sbjct: 249 ITNEEAISTARRLMEEEGILAGISSGAA------------------VAAALKLQEDESFT 290
Query: 143 INSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAE 187
++V +LPS GERYLST LF + E E
Sbjct: 291 NKNIV----------------VILPSSGERYLSTALFADLFTEKE 319
>pdb|2JC3|A Chain A, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|B Chain B, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|C Chain C, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|D Chain D, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|E Chain E, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|F Chain F, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|G Chain G, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|H Chain H, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
Length = 303
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 17/96 (17%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYV 60
MI +AE +G I PG +LIE TS NTGI LA IAA++GY+ ++
Sbjct: 48 MIVEAEKRGEIKPG-DVLIEATSGNTGIALAM-----IAALKGYRMKLLMPDNMSQERRA 101
Query: 61 VLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQLA 96
+ G LI V+ E+ +E A+ LA
Sbjct: 102 AMR--AYGAELI---------LVTKEQGMEGARDLA 126
>pdb|2BHS|A Chain A, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|B Chain B, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|C Chain C, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|D Chain D, Crystal Structure Of Cysteine Synthase B
Length = 303
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 17/96 (17%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYV 60
MI +AE +G I PG +LIE TS NTGI LA IAA++GY+ ++
Sbjct: 48 MIVEAEKRGEIKPG-DVLIEATSGNTGIALAM-----IAALKGYRMKLLMPDNMSQERRA 101
Query: 61 VLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQLA 96
+ G LI V+ E+ +E A+ LA
Sbjct: 102 AMR--AYGAELI---------LVTKEQGMEGARDLA 126
>pdb|2V03|A Chain A, High Resolution Structure And Catalysis Of An O-
Acetylserine Sulfhydrylase
Length = 303
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 17/96 (17%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYV 60
MI +AE +G I PG +LIE TS NTGI LA IAA++GY+ ++
Sbjct: 48 MIVEAEKRGEIKPG-DVLIEATSGNTGIALAM-----IAALKGYRMKLLMPDNMSQERRA 101
Query: 61 VLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQLA 96
+ G LI V+ E+ +E A+ LA
Sbjct: 102 AMR--AYGAELI---------LVTKEQGMEGARDLA 126
>pdb|4I1Y|A Chain A, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|B Chain B, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|C Chain C, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|D Chain D, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
Length = 314
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 28/45 (62%), Gaps = 6/45 (13%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
MI AE GLI P +I++E TS NTGI LA +S A RGYK
Sbjct: 55 MIDAAEKAGLIKP-DTIILEPTSGNTGIALAMVS-----AARGYK 93
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 48/136 (35%), Gaps = 46/136 (33%)
Query: 61 VLSHVVMGKHLIQA------------SCHEYCFQVSSEEAIETAQQLAHKEGLLVGXXXX 108
VLS G H IQ + + V +++A+E A+++A +EGLL G
Sbjct: 213 VLSGGQKGPHPIQGIGAGFVPPVLDLALVDEVITVGNDDALELARRMATEEGLLFGISSG 272
Query: 109 XXXXXXXXXXXXPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPS 168
PEN LIVV +LP
Sbjct: 273 AAVWAARELAHRPENAGKLIVV----------------------------------VLPD 298
Query: 169 GGERYLSTELFDSITH 184
GERYLST LF ++
Sbjct: 299 FGERYLSTVLFADLSE 314
>pdb|3RR2|A Chain A, Structure Of A Cysteine Synthase (O-Acetylserine
Sulfhydrylase (Oass)) From Mycobacterium Marinum Atcc
Baa-535 M
Length = 314
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 28/45 (62%), Gaps = 6/45 (13%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
MI AE GLI P +I++E TS NTGI LA +S A RGYK
Sbjct: 55 MIDAAEKAGLIKP-DTIILEPTSGNTGIALAMVS-----AARGYK 93
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 49/136 (36%), Gaps = 46/136 (33%)
Query: 61 VLSHVVMGKHLIQA------------SCHEYCFQVSSEEAIETAQQLAHKEGLLVGXXXX 108
VLS G H IQ + + V +++A+E A+++A +EGLLVG
Sbjct: 213 VLSGGQKGPHPIQGIGAGFVPPVLDLALVDEVITVGNDDALELARRMATEEGLLVGISSG 272
Query: 109 XXXXXXXXXXXXPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPS 168
PEN LIVV +LP
Sbjct: 273 AAVWAARELAHRPENAGKLIVV----------------------------------VLPD 298
Query: 169 GGERYLSTELFDSITH 184
GERYLST LF ++
Sbjct: 299 FGERYLSTVLFADLSE 314
>pdb|2EGU|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrase From
Geobacillus Kaustophilus Hta426
Length = 308
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 6/46 (13%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKS 46
MI+ AE G + PG +I +E TS NTGIGLA +AA +GYK+
Sbjct: 52 MIEAAEKAGKLKPGDTI-VEPTSGNTGIGLAM-----VAAAKGYKA 91
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 165 LLPSGGERYLSTELF 179
++PS GERYLST L+
Sbjct: 290 IIPSNGERYLSTPLY 304
>pdb|3T4P|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani In Complex With Designed
Tetrapeptide
pdb|3TBH|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase In
Complex With Octapeptide Derived From Serine Acetyl
Transferase Of Leishmania Donovani
pdb|3SPX|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani
Length = 334
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 5/41 (12%)
Query: 5 AEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
AE +G + PGKSI++E +S NTG+ LA + A+RGYK
Sbjct: 62 AEKEGKLIPGKSIVVESSSGNTGVSLA-----HLGAIRGYK 97
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 49/150 (32%), Gaps = 46/150 (30%)
Query: 48 HCPTRHLHHSEYVVLSHVVMGKHLIQA------------SCHEYCFQVSSEEAIETAQQL 95
H + +E VLS G H IQ S + V+ ++AIETA +L
Sbjct: 204 HARIVAVEPTESPVLSGGKPGPHKIQGIGPGFVPDVLDRSLIDEVLCVAGDDAIETALKL 263
Query: 96 AHKEGLLVGXXXXXXXXXXXXXXXXPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFC 155
+G+ G PE + IV
Sbjct: 264 TRSDGVFCGFSGGANVYAALKIAERPEMEGKTIVT------------------------- 298
Query: 156 SLHEACHQFLLPSGGERYLSTELFDSITHE 185
++PS GERYLST L+ S+ E
Sbjct: 299 ---------VIPSFGERYLSTTLYRSVRDE 319
>pdb|4AIR|A Chain A, Leishmania Major Cysteine Synthase
pdb|4AIR|B Chain B, Leishmania Major Cysteine Synthase
Length = 354
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 5/41 (12%)
Query: 5 AEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
AE +G + PGKS+++E +S NTG+ LA + A+RGYK
Sbjct: 83 AEKEGKLIPGKSVVVESSSGNTGVSLA-----HLGAIRGYK 118
Score = 33.5 bits (75), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 51/150 (34%), Gaps = 46/150 (30%)
Query: 58 EYVVLSHVVMGKHLIQA------------SCHEYCFQVSSEEAIETAQQLAHKEGLLVGX 105
E VLS G H IQ S + F V+ ++AIETA +L +G+ G
Sbjct: 235 ESPVLSGGKPGAHKIQGIGPGFVPDVLDRSLIDEVFCVAGDDAIETALKLTRSDGVFCGF 294
Query: 106 XXXXXXXXXXXXXXXPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFL 165
PE + IV +
Sbjct: 295 SGGANVYAALKIAERPEMEGKTIVT----------------------------------I 320
Query: 166 LPSGGERYLSTELFDSITHEAETCLLIQVS 195
+PS GERYLST L+ S+ E + ++ S
Sbjct: 321 IPSFGERYLSTALYRSVRDEVSSLPVVDAS 350
>pdb|2Q3B|A Chain A, 1.8 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis
pdb|2Q3C|A Chain A, 2.1 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis In Complex With The Inhibitory Peptide Dfsi
Length = 313
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 38/102 (37%), Gaps = 34/102 (33%)
Query: 83 VSSEEAIETAQQLAHKEGLLVGXXXXXXXXXXXXXXXXPENDRILIVVSLISYKLYFSFC 142
V +E+A+ A++LA +EGLLVG PEN LIVV
Sbjct: 246 VGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIVV------------ 293
Query: 143 INSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITH 184
+LP GERYLST LF +
Sbjct: 294 ----------------------VLPDFGERYLSTPLFADVAD 313
>pdb|2Q3D|A Chain A, 2.2 A Resolution Crystal Structure Of O-acetylserine
Sulfhydrylase (oass) From Mycobacterium Tuberculosis In
Complex With The Reaction Intermediate
Alpha-aminoacrylate
Length = 313
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 38/102 (37%), Gaps = 34/102 (33%)
Query: 83 VSSEEAIETAQQLAHKEGLLVGXXXXXXXXXXXXXXXXPENDRILIVVSLISYKLYFSFC 142
V +E+A+ A++LA +EGLLVG PEN LIVV
Sbjct: 246 VGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIVV------------ 293
Query: 143 INSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITH 184
+LP GERYLST LF +
Sbjct: 294 ----------------------VLPDFGERYLSTPLFADVAD 313
>pdb|1Y7L|A Chain A, O-Acetylserine Sulfhydrylase Complex
pdb|3IQG|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex
With Peptide Mnwni
pdb|3IQH|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex
With Peptide Mnydi
pdb|3IQI|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex
With Peptide Mneni
Length = 316
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 6/45 (13%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
M+ AE G +T GK I ++ TS NTGI LA+ +AA RGYK
Sbjct: 49 MVWQAEKDGTLTKGKEI-VDATSGNTGIALAY-----VAAARGYK 87
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 36/100 (36%), Gaps = 34/100 (34%)
Query: 83 VSSEEAIETAQQLAHKEGLLVGXXXXXXXXXXXXXXXXPENDRILIVVSLISYKLYFSFC 142
V S+ A+ TA++L +EG+L G PE LIVV
Sbjct: 249 VDSDTALATARRLMAEEGILAGISSGAAVAAADRLAKLPEFADKLIVV------------ 296
Query: 143 INSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSI 182
+LPS ERYLST LF+ I
Sbjct: 297 ----------------------ILPSASERYLSTALFEGI 314
>pdb|3DWI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cysm,
The Cysteine Synthase B
pdb|3DWI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Cysm,
The Cysteine Synthase B
Length = 323
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 6/45 (13%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
MI+ AE GL+ PG +IL E TS NTGI LA A ++GY+
Sbjct: 58 MIEQAEADGLLRPGATIL-EPTSGNTGISLAM-----AARLKGYR 96
>pdb|3DWG|A Chain A, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
pdb|3DWG|B Chain B, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
Length = 325
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 6/45 (13%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
MI+ AE GL+ PG +IL E TS NTGI LA A ++GY+
Sbjct: 60 MIEQAEADGLLRPGATIL-EPTSGNTGISLAM-----AARLKGYR 98
>pdb|3DKI|A Chain A, 2.1 A X-Ray Structure Of Cysm (Rv1336) From
Mycobacterium Tuberculosis An O-Phosphoserine Dependent
Cysteine Synthase
pdb|3DKI|B Chain B, 2.1 A X-Ray Structure Of Cysm (Rv1336) From
Mycobacterium Tuberculosis An O-Phosphoserine Dependent
Cysteine Synthase
pdb|3FGP|A Chain A, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
pdb|3FGP|B Chain B, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
Length = 326
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 6/45 (13%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
MI+ AE GL+ PG +IL E TS NTGI LA A ++GY+
Sbjct: 61 MIEQAEADGLLRPGATIL-EPTSGNTGISLAM-----AARLKGYR 99
>pdb|3FCA|A Chain A, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
pdb|3FCA|B Chain B, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
Length = 291
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 35/85 (41%), Gaps = 25/85 (29%)
Query: 32 FISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQA------------SCHEY 79
F + V+I AV KS VLS GKH IQ S +
Sbjct: 182 FGNGVKIVAVEPAKSP-------------VLSGGQPGKHAIQGIGAGFVPKILDRSVIDE 228
Query: 80 CFQVSSEEAIETAQQLAHKEGLLVG 104
V EEA E A+ LA KEGLLVG
Sbjct: 229 VITVEDEEAYEMARYLAKKEGLLVG 253
>pdb|1O58|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
Length = 303
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 35/85 (41%), Gaps = 25/85 (29%)
Query: 32 FISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQA------------SCHEY 79
F + V+I AV KS VLS GKH IQ S +
Sbjct: 194 FGNGVKIVAVEPAKSP-------------VLSGGQPGKHAIQGIGAGFVPKILDRSVIDE 240
Query: 80 CFQVSSEEAIETAQQLAHKEGLLVG 104
V EEA E A+ LA KEGLLVG
Sbjct: 241 VITVEDEEAYEMARYLAKKEGLLVG 265
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human
Inad- Like Protein
Length = 116
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 11 ITPGKSILIEITSSNTGIGLAFISA 35
I PG+ ++IEI+ +G+GL+ +
Sbjct: 13 IVPGQEMIIEISKGRSGLGLSIVGG 37
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,074,417
Number of Sequences: 62578
Number of extensions: 169123
Number of successful extensions: 493
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 425
Number of HSP's gapped (non-prelim): 66
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)