Query 043034
Match_columns 197
No_of_seqs 178 out of 1530
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 12:10:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043034.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043034hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1252 Cystathionine beta-syn 100.0 7E-42 1.5E-46 308.7 10.5 150 1-189 90-360 (362)
2 COG0031 CysK Cysteine synthase 100.0 3.4E-41 7.3E-46 300.5 12.9 134 1-176 49-300 (300)
3 PLN02556 cysteine synthase/L-3 100.0 1.7E-30 3.7E-35 235.8 13.9 152 1-191 97-364 (368)
4 PLN02565 cysteine synthase 100.0 6.1E-29 1.3E-33 221.4 14.2 152 1-191 53-320 (322)
5 KOG1481 Cysteine synthase [Ami 100.0 1.1E-28 2.3E-33 220.8 8.7 147 1-188 87-377 (391)
6 PLN03013 cysteine synthase 99.9 1.4E-27 3.1E-32 221.6 12.4 141 1-180 161-419 (429)
7 PLN02356 phosphateglycerate ki 99.9 5.9E-27 1.3E-31 217.2 13.4 83 69-186 315-409 (423)
8 PLN00011 cysteine synthase 99.9 1.1E-26 2.3E-31 206.2 13.9 149 1-189 55-320 (323)
9 TIGR01137 cysta_beta cystathio 99.9 8.7E-26 1.9E-30 205.7 13.9 144 1-186 49-318 (454)
10 PRK11761 cysM cysteine synthas 99.9 8.3E-25 1.8E-29 192.3 13.7 138 1-180 50-295 (296)
11 TIGR01138 cysM cysteine syntha 99.9 8.9E-25 1.9E-29 191.4 13.2 137 1-179 46-290 (290)
12 PRK10717 cysteine synthase A; 99.9 2.3E-24 5E-29 190.8 13.7 145 1-186 51-324 (330)
13 TIGR01139 cysK cysteine syntha 99.9 2.3E-24 5E-29 187.9 13.4 138 1-179 44-298 (298)
14 TIGR01136 cysKM cysteine synth 99.9 1.6E-23 3.4E-28 183.0 13.7 139 1-179 45-299 (299)
15 cd01561 CBS_like CBS_like: Thi 99.8 2.7E-20 5.8E-25 161.6 13.0 134 1-175 40-291 (291)
16 PRK06608 threonine dehydratase 99.8 2.7E-19 5.9E-24 160.5 9.7 73 77-184 251-325 (338)
17 PRK06721 threonine synthase; R 99.8 9.7E-19 2.1E-23 157.2 12.3 72 77-182 257-329 (352)
18 PRK06352 threonine synthase; V 99.8 3.7E-18 7.9E-23 153.6 11.6 64 80-177 260-324 (351)
19 PRK07409 threonine synthase; V 99.7 1.5E-17 3.4E-22 149.0 12.0 53 78-130 262-315 (353)
20 cd06448 L-Ser-dehyd Serine deh 99.7 2.5E-17 5.4E-22 146.2 11.1 53 77-130 237-296 (316)
21 cd01563 Thr-synth_1 Threonine 99.7 1E-16 2.2E-21 141.0 12.9 54 77-130 261-315 (324)
22 PRK07334 threonine dehydratase 99.7 1.9E-17 4.2E-22 151.0 8.5 52 77-130 249-300 (403)
23 cd06446 Trp-synth_B Tryptophan 99.7 7.5E-17 1.6E-21 145.7 12.1 65 77-176 300-364 (365)
24 PRK13028 tryptophan synthase s 99.7 8.7E-17 1.9E-21 148.5 12.3 53 77-130 328-380 (402)
25 PLN02618 tryptophan synthase, 99.7 2.3E-16 5E-21 146.1 12.1 53 77-130 337-389 (410)
26 TIGR00263 trpB tryptophan synt 99.7 2.6E-16 5.7E-21 143.5 11.2 65 77-176 316-380 (385)
27 cd06447 D-Ser-dehyd D-Serine d 99.7 1.1E-16 2.4E-21 147.8 8.4 51 77-129 331-381 (404)
28 PRK04346 tryptophan synthase s 99.7 5.6E-16 1.2E-20 142.9 12.1 53 77-130 324-376 (397)
29 PRK08197 threonine synthase; V 99.7 5E-16 1.1E-20 141.4 11.4 65 78-176 321-386 (394)
30 PRK13802 bifunctional indole-3 99.7 5E-16 1.1E-20 151.9 11.8 64 77-140 598-667 (695)
31 cd01562 Thr-dehyd Threonine de 99.7 4.4E-16 9.5E-21 134.9 10.1 52 77-130 245-296 (304)
32 PLN02970 serine racemase 99.7 8.9E-16 1.9E-20 136.8 11.7 54 77-130 254-310 (328)
33 TIGR02035 D_Ser_am_lyase D-ser 99.6 7.5E-16 1.6E-20 143.4 11.0 44 77-120 349-392 (431)
34 cd00640 Trp-synth-beta_II Tryp 99.6 2E-15 4.3E-20 127.3 12.5 122 1-130 38-239 (244)
35 PRK08246 threonine dehydratase 99.6 9.9E-16 2.2E-20 135.5 11.0 53 77-130 245-297 (310)
36 PRK06110 hypothetical protein; 99.6 1.6E-15 3.5E-20 134.4 11.2 52 77-130 249-300 (322)
37 PRK07048 serine/threonine dehy 99.6 1.5E-15 3.2E-20 134.3 10.8 52 77-130 252-303 (321)
38 PRK13803 bifunctional phosphor 99.6 1.8E-15 3.9E-20 145.7 11.6 53 77-130 536-588 (610)
39 PRK06815 hypothetical protein; 99.6 2.2E-15 4.8E-20 133.3 10.6 52 77-130 249-300 (317)
40 PRK08329 threonine synthase; V 99.6 4.7E-15 1E-19 133.2 12.9 52 78-130 285-337 (347)
41 TIGR01415 trpB_rel pyridoxal-p 99.6 3.3E-15 7.3E-20 138.4 10.7 73 77-183 344-416 (419)
42 PLN02569 threonine synthase 99.6 5.3E-15 1.1E-19 139.4 11.8 52 78-130 379-432 (484)
43 PRK08638 threonine dehydratase 99.6 5.1E-15 1.1E-19 132.8 10.9 54 77-130 255-308 (333)
44 PRK08198 threonine dehydratase 99.6 5.3E-15 1.2E-19 134.4 10.0 52 77-130 250-301 (404)
45 PRK07591 threonine synthase; V 99.6 1.3E-14 2.8E-19 133.8 12.2 53 78-130 331-384 (421)
46 PRK06260 threonine synthase; V 99.6 1.6E-14 3.5E-19 131.7 11.8 53 78-130 308-361 (397)
47 TIGR01127 ilvA_1Cterm threonin 99.6 1.5E-14 3.2E-19 130.4 11.2 52 77-130 228-279 (380)
48 PRK06382 threonine dehydratase 99.6 1.2E-14 2.7E-19 133.0 10.2 52 77-130 253-304 (406)
49 PRK08206 diaminopropionate amm 99.6 1.4E-14 3E-19 132.9 10.1 54 77-130 310-377 (399)
50 PRK12391 tryptophan synthase s 99.6 1.8E-14 3.8E-19 134.0 10.5 73 77-183 353-425 (427)
51 PRK02991 D-serine dehydratase; 99.5 3E-14 6.5E-19 133.0 11.2 54 77-130 354-417 (441)
52 PRK06381 threonine synthase; V 99.5 5.2E-14 1.1E-18 124.0 11.2 51 79-130 262-312 (319)
53 PRK08813 threonine dehydratase 99.5 7.1E-14 1.5E-18 127.1 11.7 48 77-130 256-303 (349)
54 TIGR00260 thrC threonine synth 99.5 1.2E-13 2.6E-18 121.8 12.6 54 77-130 263-317 (328)
55 PRK07476 eutB threonine dehydr 99.5 6.9E-14 1.5E-18 124.0 10.9 52 77-130 249-300 (322)
56 TIGR02079 THD1 threonine dehyd 99.5 6E-14 1.3E-18 129.0 10.5 62 77-140 248-309 (409)
57 PRK08639 threonine dehydratase 99.5 1.5E-13 3.2E-18 126.5 11.4 62 77-140 259-320 (420)
58 PRK05638 threonine synthase; V 99.5 4.9E-13 1.1E-17 123.7 12.6 51 79-130 298-349 (442)
59 TIGR02991 ectoine_eutB ectoine 99.5 2.8E-13 6.1E-18 120.4 10.4 51 77-130 249-299 (317)
60 PRK08526 threonine dehydratase 99.4 4E-13 8.7E-18 123.7 9.0 63 77-140 248-310 (403)
61 PRK06450 threonine synthase; V 99.4 1.9E-12 4.2E-17 116.6 11.9 39 78-117 283-321 (338)
62 PF00291 PALP: Pyridoxal-phosp 99.4 2.3E-12 4.9E-17 110.6 10.6 54 77-130 246-302 (306)
63 TIGR01275 ACC_deam_rel pyridox 99.4 1.3E-12 2.9E-17 114.6 9.2 54 77-130 241-295 (311)
64 TIGR03844 cysteate_syn cysteat 99.4 2.7E-12 5.9E-17 118.2 10.9 54 77-130 319-373 (398)
65 TIGR01124 ilvA_2Cterm threonin 99.4 4.3E-12 9.3E-17 120.0 12.2 54 77-130 246-299 (499)
66 PRK12390 1-aminocyclopropane-1 99.4 2.1E-12 4.4E-17 115.2 8.8 54 77-130 264-319 (337)
67 PRK09224 threonine dehydratase 99.4 4.1E-12 8.9E-17 120.0 10.6 54 77-130 249-302 (504)
68 PRK14045 1-aminocyclopropane-1 99.4 2.6E-12 5.7E-17 114.5 8.8 51 78-130 258-309 (329)
69 PRK12483 threonine dehydratase 99.3 7E-12 1.5E-16 119.4 12.1 64 77-140 266-329 (521)
70 PLN02550 threonine dehydratase 99.3 1E-11 2.2E-16 120.0 12.5 55 77-131 338-392 (591)
71 cd06449 ACCD Aminocyclopropane 99.3 3.6E-12 7.9E-17 111.9 8.5 54 77-130 247-302 (307)
72 PRK03910 D-cysteine desulfhydr 99.2 9.2E-11 2E-15 104.4 8.4 54 77-130 258-313 (331)
73 TIGR01274 ACC_deam 1-aminocycl 99.1 1.8E-10 3.9E-15 102.9 9.1 54 77-130 263-318 (337)
74 TIGR03528 2_3_DAP_am_ly diamin 99.1 2.7E-10 5.8E-15 104.9 9.7 38 77-114 310-351 (396)
75 TIGR01747 diampropi_NH3ly diam 99.1 4E-10 8.6E-15 103.2 9.7 55 77-131 291-359 (376)
76 COG0498 ThrC Threonine synthas 98.9 5.6E-09 1.2E-13 97.4 10.9 63 78-140 314-377 (411)
77 COG0133 TrpB Tryptophan syntha 98.9 4.3E-09 9.3E-14 96.4 9.8 70 77-146 321-390 (396)
78 COG1171 IlvA Threonine dehydra 98.8 3E-08 6.4E-13 91.0 9.8 53 77-130 256-308 (347)
79 KOG1250 Threonine/serine dehyd 98.7 1.2E-07 2.6E-12 88.7 11.1 53 77-130 295-347 (457)
80 KOG1395 Tryptophan synthase be 98.4 1.7E-06 3.7E-11 80.6 10.7 67 77-144 389-456 (477)
81 KOG1251 Serine racemase [Signa 98.1 2.4E-05 5.3E-10 70.2 9.4 52 77-130 253-304 (323)
82 COG1350 Predicted alternative 97.1 0.0047 1E-07 57.6 10.0 54 77-130 354-407 (432)
83 cd01560 Thr-synth_2 Threonine 96.8 0.0031 6.7E-08 59.9 6.8 66 79-146 361-426 (460)
84 PRK09225 threonine synthase; V 96.7 0.0038 8.3E-08 59.3 6.7 64 79-145 358-421 (462)
85 COG3048 DsdA D-serine dehydrat 96.6 0.0015 3.2E-08 60.6 3.0 42 77-118 357-398 (443)
86 cd01560 Thr-synth_2 Threonine 91.0 0.32 7E-06 46.3 4.6 31 14-49 131-162 (460)
87 PRK09225 threonine synthase; V 89.5 0.45 9.6E-06 45.5 4.2 28 17-49 133-161 (462)
88 PF03192 DUF257: Pyrococcus pr 89.1 0.45 9.9E-06 41.0 3.6 40 9-49 6-45 (210)
89 cd08281 liver_ADH_like1 Zinc-d 84.9 8 0.00017 34.4 9.2 38 6-49 184-222 (371)
90 COG0604 Qor NADPH:quinone redu 78.7 20 0.00044 32.2 9.6 96 7-120 136-233 (326)
91 TIGR03451 mycoS_dep_FDH mycoth 78.1 17 0.00037 32.1 8.8 38 6-49 169-207 (358)
92 PF04127 DFP: DNA / pantothena 77.8 6.5 0.00014 33.1 5.8 65 18-104 23-88 (185)
93 cd08274 MDR9 Medium chain dehy 74.5 7.6 0.00016 33.4 5.5 40 5-49 169-208 (350)
94 PF14354 Lar_restr_allev: Rest 74.4 1.3 2.8E-05 30.2 0.5 7 150-156 4-10 (61)
95 PRK10309 galactitol-1-phosphat 73.9 23 0.00049 30.9 8.4 38 6-49 153-190 (347)
96 cd08258 Zn_ADH4 Alcohol dehydr 70.8 9.7 0.00021 32.9 5.3 38 6-49 157-194 (306)
97 cd08295 double_bond_reductase_ 70.2 10 0.00022 33.0 5.3 38 7-49 145-182 (338)
98 cd08292 ETR_like_2 2-enoyl thi 70.0 10 0.00022 32.1 5.2 96 5-118 131-228 (324)
99 cd08244 MDR_enoyl_red Possible 69.2 12 0.00027 31.5 5.5 39 6-49 135-173 (324)
100 PF13580 SIS_2: SIS domain; PD 68.9 11 0.00024 29.5 4.8 37 10-49 100-136 (138)
101 TIGR03655 anti_R_Lar restricti 68.8 2 4.4E-05 29.0 0.5 10 150-159 2-11 (53)
102 COG3967 DltE Short-chain dehyd 68.2 17 0.00038 32.4 6.3 32 13-49 4-35 (245)
103 TIGR02825 B4_12hDH leukotriene 68.1 11 0.00024 32.4 5.1 103 6-130 131-235 (325)
104 cd08264 Zn_ADH_like2 Alcohol d 67.5 14 0.0003 31.6 5.5 89 7-119 156-244 (325)
105 PRK09710 lar restriction allev 67.4 2.2 4.8E-05 30.9 0.5 13 148-160 5-17 (64)
106 cd08294 leukotriene_B4_DH_like 67.4 13 0.00028 31.6 5.3 39 6-49 136-174 (329)
107 PRK05854 short chain dehydroge 67.0 8.1 0.00018 33.8 4.1 31 14-49 14-44 (313)
108 PRK12481 2-deoxy-D-gluconate 3 66.7 9.2 0.0002 31.9 4.2 32 13-49 7-38 (251)
109 PLN03154 putative allyl alcoho 66.6 13 0.00028 33.1 5.3 94 7-119 152-249 (348)
110 cd08243 quinone_oxidoreductase 65.4 17 0.00036 30.4 5.5 38 7-49 136-173 (320)
111 TIGR02824 quinone_pig3 putativ 65.3 20 0.00044 29.7 6.0 39 6-49 132-170 (325)
112 cd08287 FDH_like_ADH3 formalde 64.6 16 0.00035 31.5 5.4 37 7-49 162-198 (345)
113 TIGR03201 dearomat_had 6-hydro 64.2 16 0.00035 32.1 5.5 39 5-49 158-196 (349)
114 KOG0023 Alcohol dehydrogenase, 63.7 53 0.0012 31.0 8.8 103 5-130 173-278 (360)
115 PF12242 Eno-Rase_NADH_b: NAD( 62.3 9 0.0002 28.8 2.9 42 1-49 26-68 (78)
116 cd05195 enoyl_red enoyl reduct 62.2 24 0.00051 28.5 5.7 38 7-49 102-139 (293)
117 cd05288 PGDH Prostaglandin deh 61.8 20 0.00044 30.4 5.5 95 7-119 139-235 (329)
118 PRK06398 aldose dehydrogenase; 61.5 13 0.00027 31.2 4.1 32 13-49 5-36 (258)
119 cd08242 MDR_like Medium chain 61.5 21 0.00045 30.5 5.5 38 6-49 148-185 (319)
120 cd05285 sorbitol_DH Sorbitol d 60.2 22 0.00048 30.9 5.5 39 5-49 154-193 (343)
121 cd08269 Zn_ADH9 Alcohol dehydr 60.2 23 0.00051 29.6 5.5 38 6-49 122-160 (312)
122 cd08251 polyketide_synthase po 60.1 24 0.00053 29.0 5.5 95 6-118 113-209 (303)
123 cd08297 CAD3 Cinnamyl alcohol 60.1 23 0.0005 30.5 5.6 38 7-49 159-196 (341)
124 TIGR02819 fdhA_non_GSH formald 59.8 21 0.00046 32.6 5.6 39 5-49 177-215 (393)
125 PRK07453 protochlorophyllide o 59.6 13 0.00029 32.2 4.0 31 14-49 6-36 (322)
126 cd05289 MDR_like_2 alcohol deh 59.5 23 0.0005 29.1 5.3 38 7-49 138-175 (309)
127 cd05188 MDR Medium chain reduc 58.9 28 0.00061 28.1 5.6 38 6-49 127-164 (271)
128 cd08272 MDR6 Medium chain dehy 58.8 29 0.00063 28.9 5.8 40 6-50 137-176 (326)
129 cd08254 hydroxyacyl_CoA_DH 6-h 57.8 30 0.00065 29.4 5.8 38 6-49 158-195 (338)
130 TIGR02822 adh_fam_2 zinc-bindi 57.3 26 0.00055 30.8 5.5 39 5-49 157-195 (329)
131 cd05283 CAD1 Cinnamyl alcohol 57.3 25 0.00054 30.5 5.3 36 8-49 164-199 (337)
132 cd08267 MDR1 Medium chain dehy 56.8 34 0.00074 28.5 5.9 38 7-49 137-174 (319)
133 cd08289 MDR_yhfp_like Yhfp put 56.2 34 0.00074 29.0 5.9 36 9-49 142-177 (326)
134 cd08250 Mgc45594_like Mgc45594 56.1 29 0.00062 29.6 5.4 94 7-119 133-228 (329)
135 PRK08303 short chain dehydroge 55.9 18 0.00038 31.8 4.2 31 14-49 8-38 (305)
136 cd08286 FDH_like_ADH2 formalde 55.7 27 0.00059 30.2 5.3 38 6-49 159-197 (345)
137 PRK10754 quinone oxidoreductas 55.7 32 0.00069 29.4 5.6 39 6-49 133-171 (327)
138 cd08255 2-desacetyl-2-hydroxye 55.5 31 0.00067 28.7 5.4 38 6-49 90-128 (277)
139 PTZ00354 alcohol dehydrogenase 55.0 38 0.00081 28.6 5.9 94 7-118 134-230 (334)
140 PRK07791 short chain dehydroge 54.7 21 0.00045 30.7 4.4 32 13-49 5-36 (286)
141 TIGR02823 oxido_YhdH putative 54.2 31 0.00068 29.3 5.4 38 7-49 138-176 (323)
142 PRK13656 trans-2-enoyl-CoA red 54.2 23 0.00049 33.8 4.8 45 1-49 27-72 (398)
143 PRK06997 enoyl-(acyl carrier p 53.8 20 0.00044 30.2 4.1 34 13-49 5-38 (260)
144 cd08249 enoyl_reductase_like e 53.5 24 0.00053 30.7 4.7 92 9-119 150-243 (339)
145 cd08253 zeta_crystallin Zeta-c 53.1 41 0.0009 27.7 5.8 93 7-117 138-232 (325)
146 PRK07370 enoyl-(acyl carrier p 52.9 21 0.00045 30.1 4.0 34 13-49 5-38 (258)
147 cd08259 Zn_ADH5 Alcohol dehydr 52.8 35 0.00077 28.7 5.4 37 8-49 157-193 (332)
148 PLN02586 probable cinnamyl alc 52.8 29 0.00063 30.9 5.1 36 8-49 178-213 (360)
149 KOG2915 tRNA(1-methyladenosine 52.6 13 0.00027 34.4 2.8 25 10-35 102-126 (314)
150 cd08239 THR_DH_like L-threonin 52.5 34 0.00075 29.5 5.4 39 5-49 155-194 (339)
151 cd05286 QOR2 Quinone oxidoredu 52.3 34 0.00073 28.1 5.1 38 7-49 130-167 (320)
152 cd08241 QOR1 Quinone oxidoredu 52.3 44 0.00095 27.6 5.8 38 7-49 133-170 (323)
153 cd08256 Zn_ADH2 Alcohol dehydr 52.1 37 0.00081 29.5 5.6 38 6-49 167-204 (350)
154 PRK09620 hypothetical protein; 51.9 13 0.00028 32.1 2.7 24 21-49 26-49 (229)
155 cd08300 alcohol_DH_class_III c 51.9 40 0.00086 29.9 5.8 38 6-49 179-217 (368)
156 cd08293 PTGR2 Prostaglandin re 51.5 34 0.00075 29.5 5.2 38 7-49 146-186 (345)
157 PRK06196 oxidoreductase; Provi 51.5 23 0.00049 30.8 4.1 32 13-49 25-56 (315)
158 PRK13771 putative alcohol dehy 51.3 31 0.00067 29.5 4.9 35 10-49 159-193 (334)
159 cd08296 CAD_like Cinnamyl alco 51.2 37 0.0008 29.4 5.4 37 7-49 157-193 (333)
160 PRK08159 enoyl-(acyl carrier p 50.8 18 0.00039 30.9 3.4 38 8-49 5-42 (272)
161 PRK06505 enoyl-(acyl carrier p 50.7 23 0.00051 30.2 4.0 37 9-49 3-39 (271)
162 cd08261 Zn_ADH7 Alcohol dehydr 50.2 42 0.00091 28.9 5.6 37 7-49 153-189 (337)
163 PF03853 YjeF_N: YjeF-related 50.1 44 0.00094 27.2 5.4 35 13-49 24-58 (169)
164 COG1028 FabG Dehydrogenases wi 50.1 27 0.00058 28.6 4.2 31 14-49 5-35 (251)
165 cd08301 alcohol_DH_plants Plan 49.6 46 0.00099 29.4 5.8 39 5-49 179-218 (369)
166 smart00829 PKS_ER Enoylreducta 49.6 42 0.00091 27.1 5.2 38 7-49 98-135 (288)
167 cd08282 PFDH_like Pseudomonas 49.3 39 0.00085 30.1 5.4 38 6-49 169-207 (375)
168 PRK06603 enoyl-(acyl carrier p 48.8 27 0.00058 29.4 4.1 37 9-49 4-40 (260)
169 cd05282 ETR_like 2-enoyl thioe 48.3 41 0.0009 28.3 5.1 39 6-49 131-169 (323)
170 cd08271 MDR5 Medium chain dehy 47.4 60 0.0013 27.1 5.9 39 6-49 134-172 (325)
171 cd05278 FDH_like Formaldehyde 47.3 42 0.00092 28.8 5.1 93 7-118 161-257 (347)
172 PRK08690 enoyl-(acyl carrier p 47.2 29 0.00064 29.2 4.1 34 13-49 5-38 (261)
173 PF03811 Zn_Tnp_IS1: InsA N-te 47.1 9.5 0.00021 24.4 0.8 25 151-175 7-32 (36)
174 PRK08415 enoyl-(acyl carrier p 46.9 28 0.00061 29.9 4.0 34 13-49 4-37 (274)
175 cd08231 MDR_TM0436_like Hypoth 46.8 55 0.0012 28.6 5.9 37 7-49 171-208 (361)
176 PF02737 3HCDH_N: 3-hydroxyacy 46.8 22 0.00048 29.2 3.2 23 22-49 6-28 (180)
177 cd08276 MDR7 Medium chain dehy 46.5 50 0.0011 27.8 5.4 37 7-49 154-190 (336)
178 cd08277 liver_alcohol_DH_like 46.1 49 0.0011 29.3 5.5 38 6-49 177-215 (365)
179 cd08268 MDR2 Medium chain dehy 46.0 63 0.0014 26.8 5.9 39 6-49 137-175 (328)
180 cd05276 p53_inducible_oxidored 46.0 53 0.0012 27.0 5.4 95 6-118 132-228 (323)
181 cd08285 NADP_ADH NADP(H)-depen 45.8 51 0.0011 28.7 5.5 38 6-49 159-197 (351)
182 cd08266 Zn_ADH_like1 Alcohol d 45.5 65 0.0014 27.0 5.9 95 6-118 159-255 (342)
183 cd08290 ETR 2-enoyl thioester 45.5 41 0.00089 28.9 4.8 38 7-49 140-177 (341)
184 TIGR03366 HpnZ_proposed putati 45.4 53 0.0012 27.9 5.4 39 5-49 112-151 (280)
185 cd08233 butanediol_DH_like (2R 45.4 52 0.0011 28.6 5.5 38 6-49 165-203 (351)
186 KOG1208 Dehydrogenases with di 44.7 26 0.00057 31.8 3.6 32 13-49 34-65 (314)
187 TIGR02818 adh_III_F_hyde S-(hy 44.6 60 0.0013 28.9 5.8 38 6-49 178-216 (368)
188 cd08270 MDR4 Medium chain dehy 44.2 58 0.0013 27.2 5.4 33 12-49 131-163 (305)
189 cd08232 idonate-5-DH L-idonate 44.1 52 0.0011 28.3 5.2 35 8-49 161-196 (339)
190 cd08288 MDR_yhdh Yhdh putative 43.7 58 0.0012 27.6 5.3 36 9-49 142-177 (324)
191 PF01210 NAD_Gly3P_dh_N: NAD-d 43.5 37 0.0008 27.0 3.9 24 21-49 5-28 (157)
192 cd08298 CAD2 Cinnamyl alcohol 42.6 63 0.0014 27.6 5.4 38 6-49 160-197 (329)
193 cd08246 crotonyl_coA_red croto 42.5 50 0.0011 29.4 5.0 36 9-49 189-224 (393)
194 TIGR00692 tdh L-threonine 3-de 42.5 51 0.0011 28.5 5.0 35 9-49 157-192 (340)
195 TIGR02817 adh_fam_1 zinc-bindi 42.3 58 0.0013 27.8 5.2 38 7-49 137-180 (336)
196 COG2130 Putative NADP-dependen 42.1 39 0.00085 31.6 4.3 95 6-119 143-240 (340)
197 cd08284 FDH_like_2 Glutathione 41.9 59 0.0013 27.9 5.2 37 7-49 161-198 (344)
198 PF03684 UPF0179: Uncharacteri 41.9 23 0.00049 29.3 2.5 31 149-181 91-125 (142)
199 cd08235 iditol_2_DH_like L-idi 41.2 68 0.0015 27.5 5.5 38 6-49 158-196 (343)
200 cd08234 threonine_DH_like L-th 41.1 70 0.0015 27.3 5.5 37 7-49 153-190 (334)
201 PRK07060 short chain dehydroge 40.6 55 0.0012 26.5 4.6 32 13-49 8-39 (245)
202 PLN02178 cinnamyl-alcohol dehy 40.6 52 0.0011 29.8 4.8 33 11-49 176-208 (375)
203 cd08230 glucose_DH Glucose deh 40.3 67 0.0015 28.2 5.4 35 9-49 168-202 (355)
204 cd00291 SirA_YedF_YeeD SirA, Y 40.3 1.1E+02 0.0024 20.5 5.4 40 3-49 17-56 (69)
205 COG2242 CobL Precorrin-6B meth 40.2 25 0.00054 30.2 2.6 27 8-35 29-55 (187)
206 PF05280 FlhC: Flagellar trans 39.9 30 0.00065 29.2 3.0 75 82-157 88-162 (175)
207 PRK14535 cysS cysteinyl-tRNA s 39.8 12 0.00025 38.1 0.5 18 165-182 206-223 (699)
208 PLN02740 Alcohol dehydrogenase 39.6 80 0.0017 28.3 5.8 39 5-49 190-229 (381)
209 cd08260 Zn_ADH6 Alcohol dehydr 39.0 72 0.0016 27.5 5.3 37 7-49 159-195 (345)
210 PRK09422 ethanol-active dehydr 39.0 73 0.0016 27.3 5.3 38 6-49 155-193 (338)
211 cd08248 RTN4I1 Human Reticulon 38.4 81 0.0018 27.1 5.5 38 7-49 152-193 (350)
212 cd03422 YedF YedF is a bacteri 38.4 1.2E+02 0.0026 21.1 5.5 35 10-49 22-56 (69)
213 cd08262 Zn_ADH8 Alcohol dehydr 38.3 78 0.0017 27.2 5.4 38 6-49 154-191 (341)
214 PRK09288 purT phosphoribosylgl 38.3 1.3E+02 0.0029 26.9 7.1 33 11-49 8-41 (395)
215 cd05284 arabinose_DH_like D-ar 38.0 67 0.0015 27.5 4.9 35 9-49 163-198 (340)
216 KOG0725 Reductases with broad 37.7 45 0.00098 29.3 3.9 32 13-49 7-38 (270)
217 cd08245 CAD Cinnamyl alcohol d 37.6 86 0.0019 26.7 5.5 38 6-49 155-192 (330)
218 PLN02730 enoyl-[acyl-carrier-p 37.5 40 0.00088 30.1 3.6 32 13-49 8-41 (303)
219 PRK00050 16S rRNA m(4)C1402 me 37.4 75 0.0016 28.8 5.3 34 1-35 7-40 (296)
220 TIGR01751 crot-CoA-red crotony 37.2 71 0.0015 28.7 5.2 37 8-49 184-220 (398)
221 PRK09880 L-idonate 5-dehydroge 37.0 82 0.0018 27.6 5.4 38 6-49 162-200 (343)
222 cd08291 ETR_like_1 2-enoyl thi 36.7 2.7E+02 0.0058 23.9 8.5 92 8-118 138-232 (324)
223 PF08704 GCD14: tRNA methyltra 36.6 59 0.0013 28.7 4.4 27 8-35 35-61 (247)
224 PRK07984 enoyl-(acyl carrier p 36.4 55 0.0012 27.9 4.1 34 13-49 5-38 (262)
225 PRK00299 sulfur transfer prote 35.6 1E+02 0.0023 22.3 4.9 40 3-49 27-66 (81)
226 cd08238 sorbose_phosphate_red 35.4 83 0.0018 28.6 5.3 38 7-49 169-209 (410)
227 PRK09875 putative hydrolase; P 35.2 1.4E+02 0.003 26.9 6.7 88 14-104 48-156 (292)
228 PLN02827 Alcohol dehydrogenase 35.1 1E+02 0.0022 27.7 5.8 97 5-119 185-285 (378)
229 PRK07231 fabG 3-ketoacyl-(acyl 35.0 75 0.0016 25.7 4.5 31 14-49 5-35 (251)
230 cd05279 Zn_ADH1 Liver alcohol 34.8 1.1E+02 0.0024 27.0 6.0 37 6-48 176-212 (365)
231 cd08299 alcohol_DH_class_I_II_ 34.7 96 0.0021 27.7 5.6 38 6-49 183-221 (373)
232 PRK08445 hypothetical protein; 34.5 54 0.0012 30.0 4.0 47 111-175 22-73 (348)
233 COG2515 Acd 1-aminocyclopropan 34.4 3.7E+02 0.0081 25.2 9.3 48 83-130 258-307 (323)
234 PRK05579 bifunctional phosphop 34.2 92 0.002 29.3 5.5 31 80-110 299-329 (399)
235 PRK10083 putative oxidoreducta 33.6 1E+02 0.0022 26.5 5.4 39 5-49 152-191 (339)
236 PF03959 FSH1: Serine hydrolas 33.4 77 0.0017 26.3 4.4 33 85-117 86-121 (212)
237 PF00107 ADH_zinc_N: Zinc-bind 33.3 79 0.0017 23.2 4.1 76 27-120 3-81 (130)
238 PRK08945 putative oxoacyl-(acy 33.3 87 0.0019 25.6 4.7 35 11-50 9-43 (247)
239 PF13450 NAD_binding_8: NAD(P) 33.1 59 0.0013 22.5 3.2 23 22-49 3-25 (68)
240 PRK05396 tdh L-threonine 3-deh 32.6 82 0.0018 27.2 4.7 33 11-49 161-194 (341)
241 cd05281 TDH Threonine dehydrog 32.2 85 0.0019 27.2 4.7 34 10-49 160-194 (341)
242 PRK06732 phosphopantothenate-- 32.1 48 0.001 28.4 3.1 25 20-49 22-46 (229)
243 PRK06300 enoyl-(acyl carrier p 31.8 62 0.0013 28.8 3.8 34 13-49 7-40 (299)
244 TIGR00438 rrmJ cell division p 31.7 1.1E+02 0.0023 24.7 4.9 30 5-35 24-53 (188)
245 PRK09186 flagellin modificatio 31.6 91 0.002 25.4 4.6 32 13-49 3-34 (256)
246 PLN03050 pyridoxine (pyridoxam 31.5 86 0.0019 27.5 4.6 34 15-50 61-94 (246)
247 PRK05786 fabG 3-ketoacyl-(acyl 31.2 96 0.0021 25.0 4.6 32 13-49 4-35 (238)
248 PF02353 CMAS: Mycolic acid cy 31.2 73 0.0016 28.2 4.1 42 2-50 51-92 (273)
249 PRK08220 2,3-dihydroxybenzoate 31.1 97 0.0021 25.2 4.6 32 13-49 7-38 (252)
250 PRK07533 enoyl-(acyl carrier p 31.1 76 0.0016 26.6 4.1 32 13-49 9-42 (258)
251 PRK05993 short chain dehydroge 31.0 1E+02 0.0022 26.0 4.9 32 13-49 3-34 (277)
252 cd08279 Zn_ADH_class_III Class 30.9 1.4E+02 0.0031 26.2 6.0 38 6-49 175-213 (363)
253 PRK07326 short chain dehydroge 30.9 95 0.0021 25.0 4.5 32 13-49 5-36 (237)
254 PF05605 zf-Di19: Drought indu 30.8 25 0.00054 23.5 0.9 9 149-157 2-10 (54)
255 PRK08703 short chain dehydroge 30.7 95 0.0021 25.2 4.5 31 14-49 6-36 (239)
256 COG0300 DltE Short-chain dehyd 30.7 91 0.002 28.0 4.7 33 13-50 5-37 (265)
257 cd08236 sugar_DH NAD(P)-depend 30.7 1.3E+02 0.0029 25.8 5.6 36 8-49 154-190 (343)
258 KOG2616 Pyridoxalphosphate-dep 30.6 86 0.0019 28.3 4.4 42 81-122 149-190 (266)
259 cd08273 MDR8 Medium chain dehy 30.6 1.3E+02 0.0027 25.5 5.4 38 7-49 133-170 (331)
260 KOG2923 Uncharacterized conser 29.7 21 0.00045 26.1 0.4 9 150-158 45-53 (67)
261 PRK12828 short chain dehydroge 29.7 1E+02 0.0022 24.5 4.5 31 14-49 7-37 (239)
262 PRK04148 hypothetical protein; 29.6 68 0.0015 26.0 3.4 30 13-49 16-45 (134)
263 PRK06523 short chain dehydroge 29.6 97 0.0021 25.5 4.4 32 13-49 8-39 (260)
264 PRK06949 short chain dehydroge 29.1 1.1E+02 0.0024 25.0 4.6 32 13-49 8-39 (258)
265 PRK13982 bifunctional SbtC-lik 29.1 52 0.0011 31.9 3.1 24 21-49 279-302 (475)
266 PF09329 zf-primase: Primase z 29.0 22 0.00049 23.6 0.4 16 144-159 20-35 (46)
267 PRK06125 short chain dehydroge 28.8 1.1E+02 0.0023 25.3 4.6 31 14-49 7-37 (259)
268 cd01075 NAD_bind_Leu_Phe_Val_D 28.6 1.9E+02 0.004 24.2 6.0 42 2-49 13-57 (200)
269 PRK05653 fabG 3-ketoacyl-(acyl 28.4 1.2E+02 0.0025 24.3 4.6 31 14-49 5-35 (246)
270 PRK14967 putative methyltransf 28.4 1.3E+02 0.0028 25.0 5.0 37 5-49 28-65 (223)
271 PRK07577 short chain dehydroge 28.0 1.2E+02 0.0025 24.4 4.5 31 14-49 3-33 (234)
272 PRK12384 sorbitol-6-phosphate 27.9 1.1E+02 0.0024 25.1 4.5 30 15-49 3-32 (259)
273 PRK12748 3-ketoacyl-(acyl-carr 27.7 90 0.0019 25.8 3.9 36 14-52 5-40 (256)
274 PRK05875 short chain dehydroge 27.7 1.2E+02 0.0025 25.3 4.6 31 14-49 7-37 (276)
275 PRK07523 gluconate 5-dehydroge 27.5 1.2E+02 0.0026 24.9 4.6 32 13-49 9-40 (255)
276 PRK08993 2-deoxy-D-gluconate 3 27.2 1.2E+02 0.0026 25.1 4.6 31 14-49 10-40 (253)
277 PRK07097 gluconate 5-dehydroge 27.1 1.2E+02 0.0026 25.2 4.6 32 13-49 9-40 (265)
278 KOG1197 Predicted quinone oxid 27.1 1.4E+02 0.0029 27.9 5.1 39 6-49 139-177 (336)
279 PRK12771 putative glutamate sy 27.0 1.1E+02 0.0024 29.3 4.9 33 11-49 134-166 (564)
280 PRK06181 short chain dehydroge 26.9 1.2E+02 0.0026 25.0 4.5 29 16-49 3-31 (263)
281 TIGR01832 kduD 2-deoxy-D-gluco 26.8 1.3E+02 0.0027 24.5 4.6 32 14-50 5-36 (248)
282 PRK12860 transcriptional activ 26.7 1.3E+02 0.0028 26.0 4.7 74 82-156 88-161 (189)
283 COG4938 Uncharacterized conser 26.7 17 0.00037 34.0 -0.6 76 20-98 235-314 (374)
284 PLN02514 cinnamyl-alcohol dehy 26.7 1.5E+02 0.0032 26.3 5.3 37 7-49 174-210 (357)
285 cd08265 Zn_ADH3 Alcohol dehydr 26.6 1.4E+02 0.003 26.7 5.2 35 9-49 199-234 (384)
286 PF12847 Methyltransf_18: Meth 26.6 1.4E+02 0.0031 21.2 4.4 31 13-49 1-31 (112)
287 cd03420 SirA_RHOD_Pry_redox Si 26.5 2.2E+02 0.0048 19.7 5.3 40 3-49 17-56 (69)
288 cd03421 SirA_like_N SirA_like_ 26.5 2E+02 0.0043 19.5 4.9 39 2-48 16-54 (67)
289 COG0353 RecR Recombinational D 26.5 1E+02 0.0022 26.8 4.1 58 71-156 16-73 (198)
290 cd08278 benzyl_alcohol_DH Benz 26.4 1.8E+02 0.0039 25.7 5.8 38 6-49 179-217 (365)
291 PRK12742 oxidoreductase; Provi 26.3 1.3E+02 0.0028 24.2 4.5 31 14-49 6-36 (237)
292 PRK08643 acetoin reductase; Va 26.1 1.2E+02 0.0027 24.8 4.5 30 15-49 3-32 (256)
293 PRK07035 short chain dehydroge 26.1 1.3E+02 0.0029 24.5 4.6 32 14-50 8-39 (252)
294 PRK09072 short chain dehydroge 26.1 1.3E+02 0.0028 24.9 4.6 32 13-49 4-35 (263)
295 PF08541 ACP_syn_III_C: 3-Oxoa 25.9 51 0.0011 23.4 1.9 20 2-22 57-76 (90)
296 PRK07774 short chain dehydroge 25.8 1.4E+02 0.003 24.3 4.6 31 14-49 6-36 (250)
297 PRK07067 sorbitol dehydrogenas 25.7 1.3E+02 0.0029 24.7 4.6 31 14-49 6-36 (257)
298 PF06325 PrmA: Ribosomal prote 25.6 79 0.0017 28.6 3.4 29 11-47 159-187 (295)
299 PRK06138 short chain dehydroge 25.6 1.3E+02 0.0029 24.3 4.5 31 14-49 5-35 (252)
300 cd08247 AST1_like AST1 is a cy 25.6 1.4E+02 0.003 26.0 4.8 35 10-49 148-184 (352)
301 PRK11018 hypothetical protein; 25.6 2.2E+02 0.0048 20.3 5.2 36 9-49 30-65 (78)
302 PRK06172 short chain dehydroge 25.5 1.3E+02 0.0029 24.5 4.6 31 14-49 7-37 (253)
303 TIGR01769 GGGP geranylgeranylg 25.4 29 0.00064 29.8 0.6 26 86-111 11-38 (205)
304 PRK13394 3-hydroxybutyrate deh 25.2 1.4E+02 0.0031 24.3 4.6 31 14-49 7-37 (262)
305 PRK05717 oxidoreductase; Valid 25.0 1.4E+02 0.003 24.6 4.6 32 13-49 9-40 (255)
306 PRK06124 gluconate 5-dehydroge 24.9 1.4E+02 0.0031 24.4 4.6 32 13-49 10-41 (256)
307 PRK06841 short chain dehydroge 24.6 1.5E+02 0.0032 24.2 4.6 32 13-49 14-45 (255)
308 TIGR02114 coaB_strep phosphopa 24.4 81 0.0018 27.0 3.1 25 20-49 21-45 (227)
309 PRK12826 3-ketoacyl-(acyl-carr 24.2 1.4E+02 0.003 24.0 4.4 32 13-49 5-36 (251)
310 cd01988 Na_H_Antiporter_C The 24.2 1.5E+02 0.0033 21.3 4.2 67 85-153 54-127 (132)
311 COG1064 AdhP Zn-dependent alco 24.1 4.9E+02 0.011 24.3 8.3 94 5-120 158-251 (339)
312 PRK07814 short chain dehydroge 24.1 1.5E+02 0.0032 24.7 4.6 33 13-50 9-41 (263)
313 PF06221 zf-C2HC5: Putative zi 24.0 36 0.00078 24.0 0.7 8 149-156 35-42 (57)
314 PRK08339 short chain dehydroge 24.0 1.4E+02 0.0031 25.0 4.6 32 13-49 7-38 (263)
315 PF01206 TusA: Sulfurtransfera 24.0 2E+02 0.0044 19.5 4.6 35 10-49 23-57 (70)
316 PRK05867 short chain dehydroge 24.0 1.5E+02 0.0033 24.3 4.6 31 14-49 9-39 (253)
317 PRK05872 short chain dehydroge 23.9 1.5E+02 0.0032 25.5 4.7 32 13-49 8-39 (296)
318 PRK08217 fabG 3-ketoacyl-(acyl 23.9 1.6E+02 0.0034 23.7 4.6 32 13-49 4-35 (253)
319 PRK07576 short chain dehydroge 23.9 1.5E+02 0.0033 24.8 4.7 32 13-49 8-39 (264)
320 PF05206 TRM13: Methyltransfer 23.7 1.8E+02 0.004 25.8 5.3 44 1-50 6-54 (259)
321 PRK09242 tropinone reductase; 23.7 1.5E+02 0.0033 24.3 4.6 32 13-49 8-39 (257)
322 PRK06198 short chain dehydroge 23.6 1.5E+02 0.0032 24.3 4.5 31 14-49 6-37 (260)
323 PLN03049 pyridoxine (pyridoxam 23.5 1.4E+02 0.003 28.8 4.8 33 15-49 60-92 (462)
324 cd05280 MDR_yhdh_yhfp Yhdh and 23.5 1.9E+02 0.0042 24.2 5.3 91 10-119 142-234 (325)
325 PF08373 RAP: RAP domain; Int 23.4 62 0.0013 21.3 1.8 17 35-51 23-39 (58)
326 PRK06500 short chain dehydroge 23.4 1.6E+02 0.0035 23.8 4.6 32 13-49 5-36 (249)
327 TIGR03325 BphB_TodD cis-2,3-di 23.2 1.6E+02 0.0034 24.5 4.6 32 14-50 5-36 (262)
328 PLN02918 pyridoxine (pyridoxam 23.0 1.4E+02 0.003 29.6 4.8 33 15-49 136-168 (544)
329 PRK11747 dinG ATP-dependent DN 22.9 1.6E+02 0.0034 29.6 5.2 46 3-49 38-84 (697)
330 PRK07890 short chain dehydroge 22.9 1.7E+02 0.0036 23.9 4.6 32 13-49 4-35 (258)
331 PRK12829 short chain dehydroge 22.8 1.6E+02 0.0035 24.0 4.5 32 13-49 10-41 (264)
332 cd08252 AL_MDR Arginate lyase 22.8 2.1E+02 0.0046 24.2 5.4 38 7-49 138-181 (336)
333 PRK08862 short chain dehydroge 22.8 1.6E+02 0.0034 24.5 4.5 32 13-49 4-35 (227)
334 PRK07677 short chain dehydroge 22.7 1.6E+02 0.0034 24.2 4.5 30 15-49 2-31 (252)
335 PRK12939 short chain dehydroge 22.7 1.7E+02 0.0037 23.6 4.6 31 14-49 7-37 (250)
336 PF04805 Pox_E10: E10-like pro 22.6 16 0.00035 26.9 -1.3 28 147-174 13-43 (70)
337 TIGR01142 purT phosphoribosylg 22.5 2.2E+02 0.0048 25.3 5.7 23 22-49 6-28 (380)
338 PRK09134 short chain dehydroge 22.4 1.8E+02 0.0038 24.0 4.7 32 13-49 8-39 (258)
339 PRK12809 putative oxidoreducta 22.1 1.9E+02 0.0042 28.4 5.6 31 14-50 310-340 (639)
340 cd08275 MDR3 Medium chain dehy 22.1 2.2E+02 0.0047 23.9 5.3 30 6-35 131-160 (337)
341 PF14401 RLAN: RimK-like ATPgr 22.1 97 0.0021 25.4 3.0 24 166-190 22-45 (153)
342 PF14001 YdfZ: YdfZ protein 22.0 54 0.0012 23.8 1.3 26 8-34 7-32 (64)
343 PRK07063 short chain dehydroge 21.8 1.8E+02 0.0038 24.0 4.6 31 14-49 7-37 (260)
344 PRK08642 fabG 3-ketoacyl-(acyl 21.8 1.8E+02 0.0038 23.6 4.5 30 15-49 6-35 (253)
345 PRK06057 short chain dehydroge 21.8 1.8E+02 0.0039 23.9 4.6 32 13-49 6-37 (255)
346 PRK12823 benD 1,6-dihydroxycyc 21.7 1.8E+02 0.0039 23.9 4.6 32 14-50 8-39 (260)
347 TIGR00521 coaBC_dfp phosphopan 21.7 90 0.002 29.3 3.1 22 23-49 210-231 (390)
348 COG0578 GlpA Glycerol-3-phosph 21.6 1.2E+02 0.0025 30.1 3.9 27 18-49 15-41 (532)
349 PRK07806 short chain dehydroge 21.4 1.8E+02 0.0039 23.6 4.5 31 14-49 6-36 (248)
350 PF01266 DAO: FAD dependent ox 21.3 1.6E+02 0.0034 24.8 4.3 28 19-51 3-30 (358)
351 TIGR01768 GGGP-family geranylg 21.3 37 0.0008 29.7 0.4 32 88-119 16-49 (223)
352 PRK09287 6-phosphogluconate de 21.3 4E+02 0.0086 25.6 7.4 80 11-110 79-168 (459)
353 PRK12743 oxidoreductase; Provi 21.2 1.8E+02 0.0038 24.0 4.5 29 16-49 4-32 (256)
354 PRK06197 short chain dehydroge 21.1 1.6E+02 0.0035 25.2 4.4 32 13-49 15-46 (306)
355 cd01268 Numb Numb Phosphotyros 21.0 53 0.0012 26.8 1.3 33 132-172 86-119 (138)
356 PLN00015 protochlorophyllide r 20.9 1E+02 0.0022 26.8 3.1 25 22-49 3-28 (308)
357 PRK06171 sorbitol-6-phosphate 20.8 1.9E+02 0.0041 23.9 4.6 31 14-49 9-39 (266)
358 PRK07666 fabG 3-ketoacyl-(acyl 20.7 2E+02 0.0043 23.3 4.7 30 15-49 8-37 (239)
359 TIGR02685 pter_reduc_Leis pter 20.7 1.2E+02 0.0026 25.3 3.4 27 20-49 5-31 (267)
360 KOG1198 Zinc-binding oxidoredu 20.5 3.6E+02 0.0077 24.8 6.7 72 10-101 154-226 (347)
361 PRK08416 7-alpha-hydroxysteroi 20.5 1.9E+02 0.0041 24.0 4.6 32 13-49 7-38 (260)
362 PF00595 PDZ: PDZ domain (Also 20.5 76 0.0017 21.9 1.9 17 4-22 37-53 (81)
363 PF07859 Abhydrolase_3: alpha/ 20.5 1.2E+02 0.0026 24.0 3.2 32 86-117 50-90 (211)
364 cd08263 Zn_ADH10 Alcohol dehyd 20.4 2.4E+02 0.0052 24.8 5.4 37 7-49 181-218 (367)
365 PRK07825 short chain dehydroge 20.3 2E+02 0.0042 24.0 4.6 31 14-49 5-35 (273)
366 cd00401 AdoHcyase S-adenosyl-L 20.3 2E+02 0.0044 27.3 5.1 35 9-49 197-231 (413)
367 PRK08063 enoyl-(acyl carrier p 20.2 2E+02 0.0044 23.3 4.6 32 13-49 3-34 (250)
368 PRK12429 3-hydroxybutyrate deh 20.2 2.1E+02 0.0045 23.2 4.6 31 14-49 4-34 (258)
369 PRK07831 short chain dehydroge 20.2 2E+02 0.0044 23.7 4.6 34 11-49 14-48 (262)
370 cd03028 GRX_PICOT_like Glutare 20.1 66 0.0014 23.3 1.5 32 143-178 14-45 (90)
371 PRK07402 precorrin-6B methylas 20.1 1.9E+02 0.0041 23.4 4.4 34 10-49 37-70 (196)
372 PLN02702 L-idonate 5-dehydroge 20.1 2.7E+02 0.0058 24.4 5.6 37 7-49 175-211 (364)
373 PLN00141 Tic62-NAD(P)-related 20.0 1.6E+02 0.0034 24.5 4.0 32 13-49 16-47 (251)
No 1
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=7e-42 Score=308.72 Aligned_cols=150 Identities=58% Similarity=0.751 Sum_probs=142.5
Q ss_pred CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-------------------------------
Q 043034 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC------------------------------- 49 (197)
Q Consensus 1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~------------------------------- 49 (197)
||++||++|+|+||.++|||+||||||||||++|+ .+|||++++
T Consensus 90 Mi~~Ae~~G~i~pg~stliEpTSGNtGigLA~~~a-----~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~ 164 (362)
T KOG1252|consen 90 MIEDAEKKGLITPGKSTLIEPTSGNTGIGLAYMAA-----LRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKG 164 (362)
T ss_pred HHHHHHHcCCccCCceEEEecCCCchHHHHHHHHH-----HcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCC
Confidence 89999999999999777999999999999999999 999999999
Q ss_pred -----------------------------eccccc---------------------------------------------
Q 043034 50 -----------------------------PTRHLH--------------------------------------------- 55 (197)
Q Consensus 50 -----------------------------p~~h~~--------------------------------------------- 55 (197)
|.+||.
T Consensus 165 ~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~ttg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~ 244 (362)
T KOG1252|consen 165 PESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYETTGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVG 244 (362)
T ss_pred hHHHHHHHHHHHHhCCChHHHHHhcCCCCcccccccccHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEE
Confidence 778886
Q ss_pred --CCCcceeccccccc--ccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhc
Q 043034 56 --HSEYVVLSHVVMGK--HLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAK 119 (197)
Q Consensus 56 --p~~~~~~~~~~~~~--~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~ 119 (197)
|.+|.+++++.+|+ |.|+||| +|+++.++++||+.|+|+|+++|||++|+|||+|++||+++++
T Consensus 245 vdp~~S~~~~~~~~g~~~~~I~GIGyg~~p~~ld~~~vd~~~~~~~d~A~~~Ar~La~eeGll~G~SSGan~~aAl~~a~ 324 (362)
T KOG1252|consen 245 VDPQESIVLSGGKPGPTFHKIQGIGYGFIPTTLDTKLVDEVLKVSSDEAIEMARRLALEEGLLVGISSGANVAAALKLAK 324 (362)
T ss_pred eCCCcceeccCCCCCCCccceeccccCcCccccchHHHHHHHHhCCHHHHHHHHHHHHhhCeeecccchHHHHHHHHHHh
Confidence 88999999999999 9999999 9999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCcccCchhHHHHhhc
Q 043034 120 IPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAETC 189 (197)
Q Consensus 120 ~~~~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~~~~~~~~~~~ 189 (197)
+.+++++.||+ ++||.|+||+||.|||+|++|++..
T Consensus 325 ~~en~~kliV~----------------------------------~~pd~ge~Y~st~L~d~w~~e~~~~ 360 (362)
T KOG1252|consen 325 RPENAGKLIVV----------------------------------TFPDFGERYLSTFLFDEWREEAEKL 360 (362)
T ss_pred ccccCCcEEEE----------------------------------ECCCcchhhhhhhhHHHHHHHHhhh
Confidence 98888888888 7799999999999999999998754
No 2
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-41 Score=300.48 Aligned_cols=134 Identities=49% Similarity=0.687 Sum_probs=126.0
Q ss_pred CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-------------------------------
Q 043034 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC------------------------------- 49 (197)
Q Consensus 1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~------------------------------- 49 (197)
||++||++|+|+||+| |||+|||||||||||+|+ ++|||++++
T Consensus 49 mI~~Ae~~G~l~pG~t-IVE~TSGNTGI~LA~vaa-----~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~ 122 (300)
T COG0031 49 MIEDAEKRGLLKPGGT-IVEATSGNTGIALAMVAA-----AKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMK 122 (300)
T ss_pred HHHHHHHcCCCCCCCE-EEEcCCChHHHHHHHHHH-----HcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchH
Confidence 8999999999999998 999999999999999999 999999999
Q ss_pred ----------------------------eccccc----------------------------------------------
Q 043034 50 ----------------------------PTRHLH---------------------------------------------- 55 (197)
Q Consensus 50 ----------------------------p~~h~~---------------------------------------------- 55 (197)
|.+||+
T Consensus 123 ~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~EI~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~v 202 (300)
T COG0031 123 GAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPEIWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAV 202 (300)
T ss_pred HHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHHHHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEE
Confidence 567775
Q ss_pred -CCCcceecccccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC
Q 043034 56 -HSEYVVLSHVVMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE 122 (197)
Q Consensus 56 -p~~~~~~~~~~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~ 122 (197)
|.+|++++++. ++|.||||| +|++++|+|+||++++|+|+++|||++|+|||||++||+++++++.
T Consensus 203 dP~~S~~~~~G~-g~~~i~GIG~~~ip~~~~~~~iD~v~~V~d~~A~~~~r~La~~eGilvG~SsGA~~~aa~~~a~~~~ 281 (300)
T COG0031 203 DPEGSVLLSGGE-GPHKIEGIGAGFVPENLDLDLIDEVIRVSDEEAIATARRLAREEGLLVGISSGAALAAALKLAKELP 281 (300)
T ss_pred CCCCCcccCCCC-CCcccCCCCCCcCCcccccccCceEEEECHHHHHHHHHHHHHHhCeeecccHHHHHHHHHHHHHhcC
Confidence 77888887655 899999999 9999999999999999999999999999999999999999999985
Q ss_pred CCCceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCc
Q 043034 123 NDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLST 176 (197)
Q Consensus 123 ~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst 176 (197)
++++||| |+||+|+||||+
T Consensus 282 -~g~~IVt----------------------------------i~pD~G~RYls~ 300 (300)
T COG0031 282 -AGKTIVT----------------------------------ILPDSGERYLSK 300 (300)
T ss_pred -CCCeEEE----------------------------------EECCCcccccCC
Confidence 6899999 999999999983
No 3
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=99.97 E-value=1.7e-30 Score=235.81 Aligned_cols=152 Identities=49% Similarity=0.678 Sum_probs=132.9
Q ss_pred CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-------------------------------
Q 043034 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC------------------------------- 49 (197)
Q Consensus 1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~------------------------------- 49 (197)
||.+|+++|.|+||.++|||+||||+|+|||++|+ .+||+++++
T Consensus 97 ~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~~a~-----~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~~~ 171 (368)
T PLN02556 97 MIEDAEKKNLITPGKTTLIEPTSGNMGISLAFMAA-----MKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGG 171 (368)
T ss_pred HHHHHHHcCCcCCCCCEEEEeCCchHHHHHHHHHH-----HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCccH
Confidence 68899999999999545999999999999999999 999999999
Q ss_pred --------------------------eccccc-----------------------------------------------C
Q 043034 50 --------------------------PTRHLH-----------------------------------------------H 56 (197)
Q Consensus 50 --------------------------p~~h~~-----------------------------------------------p 56 (197)
+.+||. |
T Consensus 172 ~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep 251 (368)
T PLN02556 172 TVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPEIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEP 251 (368)
T ss_pred HHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEee
Confidence 112332 4
Q ss_pred CCcceecccccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCC
Q 043034 57 SEYVVLSHVVMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPEND 124 (197)
Q Consensus 57 ~~~~~~~~~~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~ 124 (197)
.++.++.++.++++.|+|+| +|+++.|+|+|+++++|+|++++|+++|+||||+++||++++++...+
T Consensus 252 ~~~~~~~~g~~~~~~i~g~g~~~~p~~~~~~~~d~~v~Vsd~ea~~a~r~l~~~eGi~vg~ssgA~~~aal~~a~~~~~~ 331 (368)
T PLN02556 252 AESNVLNGGKPGPHHITGNGVGFKPDILDMDVMEKVLEVSSEDAVNMARELALKEGLMVGISSGANTVAALRLAKMPENK 331 (368)
T ss_pred CCCccccCCCCCCeeeeeccCCCCccccchhhCCeEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhccCC
Confidence 55556666666778888876 799999999999999999999999999999999999999999876446
Q ss_pred CceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCcccCchhHHHHhhccc
Q 043034 125 RILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAETCLL 191 (197)
Q Consensus 125 g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~~~~~~~~~~~~~ 191 (197)
+++||+ |+||+|+||+++.+||+|+++.+..-.
T Consensus 332 ~~~IV~----------------------------------v~~d~g~kY~~~~~~~~~~~~~~~~~~ 364 (368)
T PLN02556 332 GKLIVT----------------------------------VHPSFGERYLSSVLFQELRKEAENMQP 364 (368)
T ss_pred cCEEEE----------------------------------EECCCCcccCChhhhHHHHHHHHhcCC
Confidence 889999 999999999999999999999987643
No 4
>PLN02565 cysteine synthase
Probab=99.96 E-value=6.1e-29 Score=221.44 Aligned_cols=152 Identities=60% Similarity=0.780 Sum_probs=130.0
Q ss_pred CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-------------------------------
Q 043034 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC------------------------------- 49 (197)
Q Consensus 1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~------------------------------- 49 (197)
|+..++++|.+.||++.|||+||||+|+|||++|+ .+|+|++++
T Consensus 53 ~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~a~-----~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~ 127 (322)
T PLN02565 53 MITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAA-----AKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGMKG 127 (322)
T ss_pred HHHHHHHcCCCCCCCcEEEEECCChHHHHHHHHHH-----HcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCcHH
Confidence 57889999999999545999999999999999999 999999998
Q ss_pred --------------------------eccccc-----------------------------------------------C
Q 043034 50 --------------------------PTRHLH-----------------------------------------------H 56 (197)
Q Consensus 50 --------------------------p~~h~~-----------------------------------------------p 56 (197)
|.+||. |
T Consensus 128 ~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep 207 (322)
T PLN02565 128 AVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEP 207 (322)
T ss_pred HHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEec
Confidence 122322 4
Q ss_pred CCcceecccccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCC
Q 043034 57 SEYVVLSHVVMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPEND 124 (197)
Q Consensus 57 ~~~~~~~~~~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~ 124 (197)
.++..+.++.++++.++|+| +|+++.|+|+|+++++|+|++++|+++|||||++++++++++++...+
T Consensus 208 ~~s~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~v~V~d~ea~~a~~~l~~~~gi~vg~ssga~laaa~~~a~~~~~~ 287 (322)
T PLN02565 208 VESAVLSGGKPGPHKIQGIGAGFIPGVLDVDLLDEVVQVSSDEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKRPENA 287 (322)
T ss_pred CCCccccCCCCCCccCCCCCCCCCCCcCCHhHCCEEEEECHHHHHHHHHHHHHHhCcEEeccHHHHHHHHHHHHHhcCCC
Confidence 45545544555678888877 899999999999999999999999999999999999999999876446
Q ss_pred CceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCcccCchhHHHHhhccc
Q 043034 125 RILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAETCLL 191 (197)
Q Consensus 125 g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~~~~~~~~~~~~~ 191 (197)
+++||+ ++||+|+||++|.+|+.+..++++..+
T Consensus 288 ~~~vV~----------------------------------v~~d~G~ky~~~~~~~~~~~~~~~~~~ 320 (322)
T PLN02565 288 GKLIVV----------------------------------IFPSFGERYLSSVLFESVKKEAENMVF 320 (322)
T ss_pred CCeEEE----------------------------------EECCCccccCCchhhHHHHHHHhcCcc
Confidence 789999 999999999999999988888777643
No 5
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=99.95 E-value=1.1e-28 Score=220.77 Aligned_cols=147 Identities=29% Similarity=0.395 Sum_probs=125.0
Q ss_pred CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-------------------------------
Q 043034 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC------------------------------- 49 (197)
Q Consensus 1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~------------------------------- 49 (197)
||++||++|+|-||++ |+|.|+|||||+||++|. ++|||+.++
T Consensus 87 iir~Aee~GkL~~gg~-v~EGtaGsTgIslA~v~~-----a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~dp 160 (391)
T KOG1481|consen 87 IIRTAEEKGKLVRGGT-VVEGTAGSTGISLAHVAR-----ALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIVDP 160 (391)
T ss_pred HHHHHHHcCCcccCce-EEecCCCccchhHHHhhh-----hcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCccCh
Confidence 6999999999999997 999999999999999999 999999999
Q ss_pred ----------------------------------eccccc----------------------------------------
Q 043034 50 ----------------------------------PTRHLH---------------------------------------- 55 (197)
Q Consensus 50 ----------------------------------p~~h~~---------------------------------------- 55 (197)
+.+||+
T Consensus 161 ~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aHyetTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~ 240 (391)
T KOG1481|consen 161 NHYVNQARRAANETPNASNGIRGWFADQFENVANWLAHYETTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDG 240 (391)
T ss_pred hHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHHhcCcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCC
Confidence 446665
Q ss_pred --------CCCcceecc---ccc-------c-------cccccccc--------------ceeEEEcCcHHHHHHHHHHH
Q 043034 56 --------HSEYVVLSH---VVM-------G-------KHLIQASC--------------HEYCFQVSSEEAIETAQQLA 96 (197)
Q Consensus 56 --------p~~~~~~~~---~~~-------~-------~~~ieGiG--------------IDeiv~VsDeEAi~aaR~LA 96 (197)
|.+|-.+.. ++| | ....|||| ||+.++|+|++|++|.|.|.
T Consensus 241 ~v~~~laDPpGSGlYnkV~~GVmy~~~e~eG~r~r~q~dti~EGIGinRiT~Nf~m~~~liD~a~rv~Deqai~Msr~Ll 320 (391)
T KOG1481|consen 241 RVAVFLADPPGSGLYNKVNYGVMYDHIETEGTRRRNQVDTITEGIGINRITGNFQMAEDLIDDAMRVTDEQAINMSRYLL 320 (391)
T ss_pred ceEEEEeCCCCCchhhhhhhhhhhhhhhhcCcccCCCcchhhhcccccccccccccchhhhhhheecChHHHHHHHHHhh
Confidence 444422211 111 2 23468888 99999999999999999999
Q ss_pred HHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCc
Q 043034 97 HKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLST 176 (197)
Q Consensus 97 r~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst 176 (197)
.++|||||.||+.|..||.++|+.+. +|++||| |+||+|.||||+
T Consensus 321 ~~dGLFvGsSsa~N~VaAv~vAk~Lg-pG~~iVt----------------------------------ilCDsG~rh~sk 365 (391)
T KOG1481|consen 321 DNDGLFVGSSSALNCVAAVRVAKTLG-PGHTIVT----------------------------------ILCDSGSRHLSK 365 (391)
T ss_pred hcCceEecchhhHHHHHHHHHHHhcC-CCceEEE----------------------------------EEeCCcchHHHH
Confidence 99999999999999999999999985 8999999 999999999999
Q ss_pred ccCchhHHHHhh
Q 043034 177 ELFDSITHEAET 188 (197)
Q Consensus 177 ~~~~~~~~~~~~ 188 (197)
.+.++.+....-
T Consensus 366 ~~~~~~l~~~~l 377 (391)
T KOG1481|consen 366 LFSESFLESKKL 377 (391)
T ss_pred hcCHHHHhhcCC
Confidence 666666655543
No 6
>PLN03013 cysteine synthase
Probab=99.95 E-value=1.4e-27 Score=221.60 Aligned_cols=141 Identities=55% Similarity=0.711 Sum_probs=119.8
Q ss_pred CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-------------------------------
Q 043034 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC------------------------------- 49 (197)
Q Consensus 1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~------------------------------- 49 (197)
||.+|+++|.|+||+++|||+||||||+|||++|+ .+|||++++
T Consensus 161 ~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA~~a~-----~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~ 235 (429)
T PLN03013 161 MVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAA-----SRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTG 235 (429)
T ss_pred HHHHHHHcCCcCCCCcEEEEECCcHHHHHHHHHHH-----HcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHH
Confidence 68899999999999545999999999999999999 999999999
Q ss_pred --------------------------eccccc-----------------------------------------------C
Q 043034 50 --------------------------PTRHLH-----------------------------------------------H 56 (197)
Q Consensus 50 --------------------------p~~h~~-----------------------------------------------p 56 (197)
|.+||+ |
T Consensus 236 a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep 315 (429)
T PLN03013 236 AVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEP 315 (429)
T ss_pred HHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEe
Confidence 123432 4
Q ss_pred CCcceecccccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCC
Q 043034 57 SEYVVLSHVVMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPEND 124 (197)
Q Consensus 57 ~~~~~~~~~~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~ 124 (197)
.++..+.++.++++.|+|+| +|+++.|+|+|+++++|+|++++|+++|+||||+++||++++++..++
T Consensus 316 ~gs~~l~~g~~~~~~i~Glg~~~ip~~~~~~~vD~vv~VsD~ea~~a~r~La~~eGi~vG~SSGAalaAalkla~~~~~~ 395 (429)
T PLN03013 316 TESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENA 395 (429)
T ss_pred CCCchhhCCCCCCcccCcccCCcCCHhHHHHhccEEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhccCC
Confidence 55555555566788899988 899999999999999999999999999999999999999999875545
Q ss_pred CceE-EEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCcc-cCc
Q 043034 125 RILI-VVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTE-LFD 180 (197)
Q Consensus 125 g~~V-Vt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~-~~~ 180 (197)
+++| |+ |++|+|+||+++. +|+
T Consensus 396 g~~IVv~----------------------------------i~~d~g~~Y~~~~~~~~ 419 (429)
T PLN03013 396 GKLIAVS----------------------------------LFASGRDIYTPRCSSLS 419 (429)
T ss_pred CCEEEEE----------------------------------EcCCCchhchhhhhcCC
Confidence 6665 66 8889999999984 454
No 7
>PLN02356 phosphateglycerate kinase
Probab=99.94 E-value=5.9e-27 Score=217.17 Aligned_cols=83 Identities=24% Similarity=0.278 Sum_probs=75.7
Q ss_pred cccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccc
Q 043034 69 KHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYK 136 (197)
Q Consensus 69 ~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d 136 (197)
++.++|+| +|+++.|+|+|+++++|+|++++|+++|||||++++|++++++++. ++++||+
T Consensus 315 ~tia~Gig~~~~~~~~~~~~vD~~v~Vsd~ea~~a~r~L~~~~Gl~vg~Ssaa~laaa~~la~~~~-~g~~VV~------ 387 (423)
T PLN02356 315 DTITEGIGINRLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFVGSSSAMNCVGAVRVAQSLG-PGHTIVT------ 387 (423)
T ss_pred CeecCcCcCCCCChhHhHHhCCcEEEECHHHHHHHHHHHHHHCCeeEeECHHHHHHHHHHHHHHhC-CCCeEEE------
Confidence 56788988 9999999999999999999999999999999999999999997753 6889999
Q ss_pred cccceecccccCCCCCCccccccccceeeeccCCccccCcccCchhHHHH
Q 043034 137 LYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEA 186 (197)
Q Consensus 137 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~~~~~~~~ 186 (197)
|+||+|+|||||.|.|+|+.+.
T Consensus 388 ----------------------------Il~d~G~kyl~~~~~~~w~~~~ 409 (423)
T PLN02356 388 ----------------------------ILCDSGMRHLSKFHDPQYLSQH 409 (423)
T ss_pred ----------------------------EECCCCcchhhhhcCHHHHHhc
Confidence 9999999999998888888754
No 8
>PLN00011 cysteine synthase
Probab=99.94 E-value=1.1e-26 Score=206.18 Aligned_cols=149 Identities=64% Similarity=0.822 Sum_probs=126.0
Q ss_pred CHHHHHHcCCCCCC-CEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE------------------------------
Q 043034 1 MIKDAEDKGLITPG-KSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC------------------------------ 49 (197)
Q Consensus 1 mi~~ae~~G~i~pG-~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~------------------------------ 49 (197)
|+.+|+++|+|.|| ++ |||+||||+|++||++|+ .+|++++++
T Consensus 55 ~l~~a~~~g~~~~g~~~-vv~aSsGN~g~alA~~a~-----~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~ 128 (323)
T PLN00011 55 MIKDAEDKGLITPGKST-LIEATAGNTGIGLACIGA-----ARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIGLK 128 (323)
T ss_pred HHHHHHHcCCCCCCCcE-EEEeCCChHHHHHHHHHH-----HcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcChH
Confidence 57899999999999 66 999999999999999999 999999999
Q ss_pred ---------------------------eccccc-----------------------------------------------
Q 043034 50 ---------------------------PTRHLH----------------------------------------------- 55 (197)
Q Consensus 50 ---------------------------p~~h~~----------------------------------------------- 55 (197)
|..||.
T Consensus 129 ~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~~t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe 208 (323)
T PLN00011 129 GMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVE 208 (323)
T ss_pred HHHHHHHHHHHhCCCeEEeccccCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEe
Confidence 111221
Q ss_pred CCCcceecccccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCC
Q 043034 56 HSEYVVLSHVVMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPEN 123 (197)
Q Consensus 56 p~~~~~~~~~~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~ 123 (197)
|.++..+....+.++.++|++ +|+++.|+|+|+++++|+|++++|+++|+|||++++++++++++...
T Consensus 209 ~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~Gi~~~~ssga~laaa~~~~~~~~~ 288 (323)
T PLN00011 209 PVESAVLSGGQPGPHLIQGIGSGIIPFNLDLTIVDEIIQVTGEEAIETAKLLALKEGLLVGISSGAAAAAALKVAKRPEN 288 (323)
T ss_pred cCCCcccCCCCCCCCCCCCCCCCCCCcccChhhCCeEEEECHHHHHHHHHHHHHhcCCeEcccHHHHHHHHHHHHHhccC
Confidence 344444444455567777776 88999999999999999999999999999999999999999876534
Q ss_pred CCceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCcccCchhHHHHhhc
Q 043034 124 DRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAETC 189 (197)
Q Consensus 124 ~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~~~~~~~~~~~ 189 (197)
++++||+ |+||+|+||+||.+|+.|..++...
T Consensus 289 ~~~~vv~----------------------------------i~~d~G~ky~~~~~~~~~~~~~~~~ 320 (323)
T PLN00011 289 AGKLIVV----------------------------------IFPSGGERYLSTKLFESVRYEAENL 320 (323)
T ss_pred CCCeEEE----------------------------------EECCCccccCChhhhHHHHHhhhcC
Confidence 5789999 9999999999999999998876443
No 9
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.93 E-value=8.7e-26 Score=205.74 Aligned_cols=144 Identities=35% Similarity=0.520 Sum_probs=118.8
Q ss_pred CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-----------------------ec------
Q 043034 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-----------------------PT------ 51 (197)
Q Consensus 1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-----------------------p~------ 51 (197)
||.+|+++|.+.||++ |||+||||+|+|||++|+ .+|++++++ |.
T Consensus 49 ~l~~a~~~g~~~~g~~-vv~~ssGN~g~alA~~a~-----~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~ 122 (454)
T TIGR01137 49 MIEDAEASGRLKPGDT-IIEPTSGNTGIGLALVAA-----IKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDS 122 (454)
T ss_pred HHHHHHHcCCCCCCCE-EEEeCCcHHHHHHHHHHH-----HcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCCCc
Confidence 5789999999999998 999999999999999999 999999999 11
Q ss_pred -------------------------------cccc---------------------------------------------
Q 043034 52 -------------------------------RHLH--------------------------------------------- 55 (197)
Q Consensus 52 -------------------------------~h~~--------------------------------------------- 55 (197)
+||.
T Consensus 123 ~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ 202 (454)
T TIGR01137 123 PESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGPEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVG 202 (454)
T ss_pred hHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhHHHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEE
Confidence 1111
Q ss_pred --CCCcceeccc------ccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHH
Q 043034 56 --HSEYVVLSHV------VMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASI 115 (197)
Q Consensus 56 --p~~~~~~~~~------~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAl 115 (197)
|.++. +.+. ...++.++|+| +|+++.|+|+|+++++|+|++++|+++|||||++++|++
T Consensus 203 ve~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~~V~~~e~~~a~~~l~~~~gi~~~~ssg~~~aa~~ 281 (454)
T TIGR01137 203 ADPEGSI-LAQPENLNKTGRTPYKVEGIGYDFIPTVLDRKVVDEWIKTDDKESFKMARRLIKEEGLLVGGSSGSAVVAAL 281 (454)
T ss_pred EecCCCc-ccCCCcccCCCCCCccCCCCCCCCCCCcCCchhCCeEEEECHHHHHHHHHHHHHHhCccCcHHHHHHHHHHH
Confidence 22222 2111 11235677776 789999999999999999999999999999999999999
Q ss_pred HHhcC-CCCCCceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCcccCchhHHHH
Q 043034 116 KVAKI-PENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEA 186 (197)
Q Consensus 116 klA~~-~~~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~~~~~~~~ 186 (197)
+++++ + +++++||+ ++||+|+||++|.|+|+|....
T Consensus 282 ~~~~~~~-~~~~~vv~----------------------------------~~~d~g~~y~~~~~~~~w~~~~ 318 (454)
T TIGR01137 282 KAAEDEL-TEDQVIVV----------------------------------LLPDSIRNYMTKFLNDEWMKDN 318 (454)
T ss_pred HHHHhhc-CCCCEEEE----------------------------------EECCCCccccCcccChHHHHhc
Confidence 99884 4 36789999 9999999999998888887753
No 10
>PRK11761 cysM cysteine synthase B; Provisional
Probab=99.92 E-value=8.3e-25 Score=192.31 Aligned_cols=138 Identities=38% Similarity=0.573 Sum_probs=109.6
Q ss_pred CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-------------------------------
Q 043034 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC------------------------------- 49 (197)
Q Consensus 1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~------------------------------- 49 (197)
||.+|+++|.++||++ |||+||||+|++||++|+ .+|++++++
T Consensus 50 ~~~~a~~~g~~~~g~~-vv~aSsGN~g~alA~~a~-----~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~ 123 (296)
T PRK11761 50 MIVQAEKRGEIKPGDT-LIEATSGNTGIALAMIAA-----IKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEG 123 (296)
T ss_pred HHHHHHHcCCCCCCCE-EEEeCCChHHHHHHHHHH-----HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHH
Confidence 5789999999999998 999999999999999999 999999999
Q ss_pred -------------------------eccccc----------CC--Ccce------------------------eccccc-
Q 043034 50 -------------------------PTRHLH----------HS--EYVV------------------------LSHVVM- 67 (197)
Q Consensus 50 -------------------------p~~h~~----------p~--~~~~------------------------~~~~~~- 67 (197)
|..||. |. ...+ +.++++
T Consensus 124 ~~~~a~~l~~~~~~~~~~~~~n~~~~~~~~~t~~~Ei~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~ 203 (296)
T PRK11761 124 ARDLALQMQAEGEGKVLDQFANPDNPLAHYETTGPEIWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPE 203 (296)
T ss_pred HHHHHHHHHhccCCEecCCCCChhhHHHHhhchHHHHHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 122322 00 0000 001111
Q ss_pred ccccccccc---------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEee
Q 043034 68 GKHLIQASC---------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSL 132 (197)
Q Consensus 68 ~~~~ieGiG---------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~ 132 (197)
+.+.|.|++ +|+++.|+|+|+++++|+|++++|+++|||||++++++++++++. ++++||+
T Consensus 204 ~~~~i~g~~~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~gi~ve~ssga~laaa~~~~~~~--~~~~vV~-- 279 (296)
T PRK11761 204 EGSSIPGIRRWPEEYLPKIFDASRVDRVLDVSQQEAENTMRRLAREEGIFCGVSSGGAVAAALRIAREN--PNAVIVA-- 279 (296)
T ss_pred CCCcCcCCCCCCCCcCCcccChhhCCEEEEECHHHHHHHHHHHHHHhCceEchhHHHHHHHHHHHHHHC--CCCeEEE--
Confidence 112222221 899999999999999999999999999999999999999998774 5679999
Q ss_pred cccccccceecccccCCCCCCccccccccceeeeccCCccccCcccCc
Q 043034 133 ISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFD 180 (197)
Q Consensus 133 ~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~~ 180 (197)
|+||+|+||++|..|+
T Consensus 280 --------------------------------v~~d~g~ky~~~~~~~ 295 (296)
T PRK11761 280 --------------------------------IICDRGDRYLSTGVFP 295 (296)
T ss_pred --------------------------------EECCCCcccCChhccc
Confidence 9999999999997775
No 11
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=99.92 E-value=8.9e-25 Score=191.39 Aligned_cols=137 Identities=35% Similarity=0.530 Sum_probs=108.5
Q ss_pred CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-------------------------------
Q 043034 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC------------------------------- 49 (197)
Q Consensus 1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~------------------------------- 49 (197)
||.+|+++|.+.||++ |||+||||+|++||++|+ .+|+|++++
T Consensus 46 ~v~~a~~~g~~~~g~~-vv~aSsGN~g~alA~~a~-----~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~ 119 (290)
T TIGR01138 46 MIVEAEKRGEIKPGDV-LIEATSGNTGIALAMIAA-----LKGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEG 119 (290)
T ss_pred HHHHHHHcCCCCCCCE-EEEECCChHHHHHHHHHH-----HcCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHH
Confidence 5789999999999998 999999999999999999 999999999
Q ss_pred -------------------------eccccc----------CC--Cccee------------------------ccccc-
Q 043034 50 -------------------------PTRHLH----------HS--EYVVL------------------------SHVVM- 67 (197)
Q Consensus 50 -------------------------p~~h~~----------p~--~~~~~------------------------~~~~~- 67 (197)
|..||. +. ...+. -++++
T Consensus 120 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~ 199 (290)
T TIGR01138 120 ARDLALELANRGEGKLLDQFNNPDNPYAHYTSTGPEIWQQTGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPE 199 (290)
T ss_pred HHHHHHHHHHhCCCCCCCccCCcccHHHHhHhHHHHHHHHcCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 112221 00 00000 01111
Q ss_pred ccccccccc---------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEee
Q 043034 68 GKHLIQASC---------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSL 132 (197)
Q Consensus 68 ~~~~ieGiG---------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~ 132 (197)
+...++|+. +|+++.|+|+|+++++++|++++|+++|+|||+++++++++++++ ++++||+
T Consensus 200 ~~~~~~g~~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~~g~ssga~laa~~~~~~~~--~~~~vv~-- 275 (290)
T TIGR01138 200 EGSSIPGIRRWPTEYLPGIFDASLVDRVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAAALRLAREL--PDAVVVA-- 275 (290)
T ss_pred CCCCccCCCCCCCCcCCcccChhhCcEEEEECHHHHHHHHHHHHHHhCceEcHhHHHHHHHHHHHHHHC--CCCeEEE--
Confidence 112233321 799999999999999999999999999999999999999998875 4689999
Q ss_pred cccccccceecccccCCCCCCccccccccceeeeccCCccccCcccC
Q 043034 133 ISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELF 179 (197)
Q Consensus 133 ~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~ 179 (197)
++||+|+||++|.+|
T Consensus 276 --------------------------------v~~d~g~ky~~~~~~ 290 (290)
T TIGR01138 276 --------------------------------IICDRGDRYLSTGVF 290 (290)
T ss_pred --------------------------------EECCCCccccCcccC
Confidence 999999999998554
No 12
>PRK10717 cysteine synthase A; Provisional
Probab=99.92 E-value=2.3e-24 Score=190.80 Aligned_cols=145 Identities=34% Similarity=0.503 Sum_probs=119.5
Q ss_pred CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-----------------------ecc-----
Q 043034 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-----------------------PTR----- 52 (197)
Q Consensus 1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-----------------------p~~----- 52 (197)
|+.+|+++|.++||++ |||+||||+|++||++|+ .+|++++++ +..
T Consensus 51 ~v~~a~~~g~~~~g~~-vv~aSsGN~g~alA~~a~-----~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~ 124 (330)
T PRK10717 51 IIWDAEKRGLLKPGGT-IVEGTAGNTGIGLALVAA-----ARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANP 124 (330)
T ss_pred HHHHHHHcCCCCCCCE-EEEeCCcHHHHHHHHHHH-----HcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCcccccc
Confidence 5788999999999998 999999999999999999 999999999 110
Q ss_pred ------------------------------------ccc-----------------------------------------
Q 043034 53 ------------------------------------HLH----------------------------------------- 55 (197)
Q Consensus 53 ------------------------------------h~~----------------------------------------- 55 (197)
||.
T Consensus 125 ~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~ 204 (330)
T PRK10717 125 NNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAHYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKV 204 (330)
T ss_pred cchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHHHHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCC
Confidence 000
Q ss_pred ------CCCcceecc---c---ccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHH
Q 043034 56 ------HSEYVVLSH---V---VMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAA 111 (197)
Q Consensus 56 ------p~~~~~~~~---~---~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaL 111 (197)
|.++..... + ..+++.++|+| +|+++.|+|+|+++++++|++++|+++|||||+++
T Consensus 205 ~vi~Vep~~~~~~~~~~~g~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~vepssga~l 284 (330)
T PRK10717 205 KIVLADPTGSALYSYYKTGELKAEGSSITEGIGQGRITANLEGAPIDDAIRIPDEEALSTAYRLLEEEGLCLGGSSGINV 284 (330)
T ss_pred EEEEEcCCCCccccccccCCcCCCCCcccCcCCCCcCCcccChhhCCEEEEECHHHHHHHHHHHHHhcCCeEeecHHHHH
Confidence 222221110 0 13446677776 88999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCcccCchhHHHH
Q 043034 112 AASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEA 186 (197)
Q Consensus 112 AAAlklA~~~~~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~~~~~~~~ 186 (197)
++++++++++ .++++||+ ++||+|+||+++.|.|+|..+.
T Consensus 285 aa~~~l~~~~-~~~~~Vv~----------------------------------v~~g~g~ky~~~~~~d~~~~~~ 324 (330)
T PRK10717 285 AAALRLAREL-GPGHTIVT----------------------------------ILCDSGERYQSKLFNPDFLREK 324 (330)
T ss_pred HHHHHHHHhc-CCCCEEEE----------------------------------EECCCchhhcccccCHHHHHhc
Confidence 9999998875 36789999 9999999999998888988764
No 13
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=99.92 E-value=2.3e-24 Score=187.87 Aligned_cols=138 Identities=57% Similarity=0.749 Sum_probs=114.8
Q ss_pred CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-------------------------------
Q 043034 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC------------------------------- 49 (197)
Q Consensus 1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~------------------------------- 49 (197)
|+.+|+++|.+.||++ |||+||||+|++||++|+ .+|++++++
T Consensus 44 ~l~~a~~~g~~~~g~~-vv~aSsGN~g~alA~~a~-----~~Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~ 117 (298)
T TIGR01139 44 MIWDAEKRGLLKPGKT-IVEPTSGNTGIALAMVAA-----ARGYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKG 117 (298)
T ss_pred HHHHHHHcCCCCCCCE-EEEeCCChhHHHHHHHHH-----HcCCeEEEEeCCccCHHHHHHHHHcCCEEEEECCCCCHHH
Confidence 5788999999999998 999999999999999999 999999999
Q ss_pred ------------e---------------ccccc-----------------------------------------------
Q 043034 50 ------------P---------------TRHLH----------------------------------------------- 55 (197)
Q Consensus 50 ------------p---------------~~h~~----------------------------------------------- 55 (197)
+ .+||.
T Consensus 118 ~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve 197 (298)
T TIGR01139 118 AIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRDTDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVE 197 (298)
T ss_pred HHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHHhCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEe
Confidence 0 11111
Q ss_pred CCCcceecccccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCC
Q 043034 56 HSEYVVLSHVVMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPEN 123 (197)
Q Consensus 56 p~~~~~~~~~~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~ 123 (197)
|.++..+.....+++.++|+| +|+++.|+|+|+++++|+|++++|+++|||||++++++++++++..
T Consensus 198 ~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~~pssga~laa~~~~~~~~~- 276 (298)
T TIGR01139 198 PAESPVLSGGKPGPHKIQGIGAGFIPKNLNRSVIDEVITVSDEEAIETARRLAAEEGILVGISSGAAVAAALKLAKRPE- 276 (298)
T ss_pred cCCCcccCCCCCCCCCCCCCCCCCCCCccChhhCCEEEEECHHHHHHHHHHHHHhcCceEcccHHHHHHHHHHHHHhcC-
Confidence 333333333334456677765 7999999999999999999999999999999999999999998764
Q ss_pred CCceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCcccC
Q 043034 124 DRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELF 179 (197)
Q Consensus 124 ~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~ 179 (197)
++++||+ ++||+|+||++|..|
T Consensus 277 ~~~~vv~----------------------------------v~~d~G~ky~~~~~~ 298 (298)
T TIGR01139 277 PDKLIVV----------------------------------ILPSTGERYLSTPLF 298 (298)
T ss_pred CCCEEEE----------------------------------EECCCCccccCcccC
Confidence 6789999 999999999998543
No 14
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=99.90 E-value=1.6e-23 Score=183.02 Aligned_cols=139 Identities=53% Similarity=0.729 Sum_probs=113.3
Q ss_pred CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-------------------------------
Q 043034 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC------------------------------- 49 (197)
Q Consensus 1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~------------------------------- 49 (197)
|+.+|.++|.+.||++ |||+||||+|++||++|+ .+|++++++
T Consensus 45 ~~~~a~~~g~~~~g~~-vv~aSsGN~g~alA~~a~-----~~G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~ 118 (299)
T TIGR01136 45 MIEDAEKRGLLKPGDT-IIEATSGNTGIALAMVAA-----AKGYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKG 118 (299)
T ss_pred HHHHHHHcCCCCCCCE-EEEeCCChHHHHHHHHHH-----HcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHH
Confidence 4778999999999998 999999999999999999 999999999
Q ss_pred --------------------------eccccc-----------------------------------------------C
Q 043034 50 --------------------------PTRHLH-----------------------------------------------H 56 (197)
Q Consensus 50 --------------------------p~~h~~-----------------------------------------------p 56 (197)
|.+|+. |
T Consensus 119 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~ 198 (299)
T TIGR01136 119 AIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDTDGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEP 198 (299)
T ss_pred HHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhcCCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEec
Confidence 011111 2
Q ss_pred CCcceecccccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCC
Q 043034 57 SEYVVLSHVVMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPEND 124 (197)
Q Consensus 57 ~~~~~~~~~~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~ 124 (197)
.++..+.+..++++.+++++ +|+++.|+|+|+++++|+|++++|+++|||||++++++++++++...+
T Consensus 199 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~e~ssaa~~a~~~~~~~~~~~~ 278 (299)
T TIGR01136 199 AESPVLSGGEPGPHKIQGIGAGFIPKILDLSLIDEVITVSDEDAIETARRLAREEGILVGISSGAAVAAALKLAKRLENA 278 (299)
T ss_pred CCCccccCCCCCCccCCCCCCCCCCccCChhhCCEEEEECHHHHHHHHHHHHHHhCceEcchHHHHHHHHHHHHHhcCCC
Confidence 22222222233345566665 789999999999999999999999999999999999999999875445
Q ss_pred CceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCcccC
Q 043034 125 RILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELF 179 (197)
Q Consensus 125 g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~ 179 (197)
+++||+ ++||+|+||+++..|
T Consensus 279 ~~~vv~----------------------------------i~~d~g~ky~~~~~~ 299 (299)
T TIGR01136 279 DKVIVA----------------------------------ILPDTGERYLSTGLF 299 (299)
T ss_pred CCEEEE----------------------------------EECCCCccccCcccC
Confidence 889999 999999999998543
No 15
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=99.84 E-value=2.7e-20 Score=161.63 Aligned_cols=134 Identities=46% Similarity=0.645 Sum_probs=108.9
Q ss_pred CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-----------------------eccc---c
Q 043034 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-----------------------PTRH---L 54 (197)
Q Consensus 1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-----------------------p~~h---~ 54 (197)
+|..|.++|.++||++ ||++||||+|.+||++|+ .+|++++++ +... +
T Consensus 40 ~l~~a~~~g~~~~~~~-vv~~SsGN~g~alA~~a~-----~~G~~~~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~ 113 (291)
T cd01561 40 MIEDAEKRGLLKPGTT-IIEPTSGNTGIGLAMVAA-----AKGYRFIIVMPETMSEEKRKLLRALGAEVILTPEAEADGM 113 (291)
T ss_pred HHHHHHHcCCCCCCCE-EEEeCCChHHHHHHHHHH-----HcCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCcCCH
Confidence 3678899999999998 999999999999999999 999999999 1000 0
Q ss_pred c-------------------------------------------------------------------------------
Q 043034 55 H------------------------------------------------------------------------------- 55 (197)
Q Consensus 55 ~------------------------------------------------------------------------------- 55 (197)
.
T Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~V 193 (291)
T cd01561 114 KGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGV 193 (291)
T ss_pred HHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCCCCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 0
Q ss_pred -CCCcceecccccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC
Q 043034 56 -HSEYVVLSHVVMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE 122 (197)
Q Consensus 56 -p~~~~~~~~~~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~ 122 (197)
|.++..+.+....++.++|+| +|+++.|+|+|++++++.|++++|+++|||||++++++++++++..
T Consensus 194 e~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~epssa~a~a~~~~~~~~~~ 273 (291)
T cd01561 194 DPVGSVLFSGGPPGPHKIEGIGAGFIPENLDRSLIDEVVRVSDEEAFAMARRLAREEGLLVGGSSGAAVAAALKLAKRLG 273 (291)
T ss_pred ecCCCcccCCCCCCCCcCCCCCCCCCCCccCchhCceeEEECHHHHHHHHHHHHHHhCeeEcccHHHHHHHHHHHHHhcC
Confidence 222222212222345566766 7899999999999999999999999999999999999999998764
Q ss_pred CCCceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccC
Q 043034 123 NDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLS 175 (197)
Q Consensus 123 ~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYls 175 (197)
++++||+ ++||+|+||++
T Consensus 274 -~~~~vv~----------------------------------v~~~~g~ky~~ 291 (291)
T cd01561 274 -PGKTIVT----------------------------------ILPDSGERYLS 291 (291)
T ss_pred -CCCeEEE----------------------------------EECCCccccCC
Confidence 6789999 99999999986
No 16
>PRK06608 threonine dehydratase; Provisional
Probab=99.79 E-value=2.7e-19 Score=160.51 Aligned_cols=73 Identities=15% Similarity=0.087 Sum_probs=63.4
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccccccceecccccCCCCCCccc
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCS 156 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~ 156 (197)
+|+++.|+|+|+++++|+|++++|+++|||||++++|+++++++. .++++||+
T Consensus 251 ~d~~v~Vsd~e~~~a~~~l~~~~gi~vepssaa~laa~~~~~~~~-~~~~~Vv~-------------------------- 303 (338)
T PRK06608 251 LDDFYLVEEYEIYYWTAWLTHLLKVICEPSSAINMVAVVNWLKTQ-SKPQKLLV-------------------------- 303 (338)
T ss_pred CCCEEEECHHHHHHHHHHHHHHcCcEEchHHHHHHHHHHhhchhh-cCCCeEEE--------------------------
Confidence 899999999999999999999999999999999999999988764 35789999
Q ss_pred cccccceeeeccCC--ccccCcccCchhHH
Q 043034 157 LHEACHQFLLPSGG--ERYLSTELFDSITH 184 (197)
Q Consensus 157 ~~~~~~~~i~~d~g--~rYlst~~~~~~~~ 184 (197)
++++++ .+|+++.+.++|+.
T Consensus 304 --------v~tgg~~d~~~~~~~~~~~~~~ 325 (338)
T PRK06608 304 --------ILSGGNIDPILYNELWKEDYLT 325 (338)
T ss_pred --------EeCCCccCHHHHHHHHHHhhhc
Confidence 898866 77888866666553
No 17
>PRK06721 threonine synthase; Reviewed
Probab=99.79 E-value=9.7e-19 Score=157.22 Aligned_cols=72 Identities=22% Similarity=0.240 Sum_probs=63.4
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC-CCCceEEEeecccccccceecccccCCCCCCcc
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE-NDRILIVVSLISYKLYFSFCINSLVNQSPCPFC 155 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~-~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~ 155 (197)
+|+++.|+|+|+++++|+|+++|||++|||||++++++++++++.. .++++||+
T Consensus 257 ~~~~~~V~d~e~~~a~~~la~~eGi~vepssgaalaa~~~~~~~~~~~~~~~Vv~------------------------- 311 (352)
T PRK06721 257 HGEIDMVSDEEILHAYRLLAKSEGVFAEPGSNASLAGVMKHVQSGKIKKGETVVA------------------------- 311 (352)
T ss_pred CCEEEEECHHHHHHHHHHHHHhcCcccCchHHHHHHHHHHHHHcCCCCCCCeEEE-------------------------
Confidence 5789999999999999999999999999999999999999987532 35789999
Q ss_pred ccccccceeeeccCCccccCcccCchh
Q 043034 156 SLHEACHQFLLPSGGERYLSTELFDSI 182 (197)
Q Consensus 156 ~~~~~~~~~i~~d~g~rYlst~~~~~~ 182 (197)
++||+|.||+.+.+.+.|
T Consensus 312 ---------v~~g~g~k~~~~~~~~~~ 329 (352)
T PRK06721 312 ---------VLTGNGLKDPDIAISSNT 329 (352)
T ss_pred ---------EeCCCCcCchHHHhhhcc
Confidence 999999999988654555
No 18
>PRK06352 threonine synthase; Validated
Probab=99.76 E-value=3.7e-18 Score=153.62 Aligned_cols=64 Identities=17% Similarity=0.268 Sum_probs=57.4
Q ss_pred EEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC-CCCceEEEeecccccccceecccccCCCCCCccccc
Q 043034 80 CFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE-NDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLH 158 (197)
Q Consensus 80 iv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~-~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~ 158 (197)
++.|+|+|+++++|+|++++||++|||||++++|+++++++.. .++++||+
T Consensus 260 ~~~V~d~e~~~a~r~la~~eGi~vepssaaalAa~~~~~~~~~~~~~~~Vv~---------------------------- 311 (351)
T PRK06352 260 IHSVTDDEIVNAYKKIAAQDGVFIEPGSAASLAGVIQHVANGTIKKGETVVC---------------------------- 311 (351)
T ss_pred EEEECHHHHHHHHHHHHhhcCceEchhHHHHHHHHHHHHHcCCCCCCCcEEE----------------------------
Confidence 8999999999999999999999999999999999999887422 35788999
Q ss_pred cccceeeeccCCccccCcc
Q 043034 159 EACHQFLLPSGGERYLSTE 177 (197)
Q Consensus 159 ~~~~~~i~~d~g~rYlst~ 177 (197)
++||+|.||+++.
T Consensus 312 ------v~tg~G~~~~~~~ 324 (351)
T PRK06352 312 ------VFTGNGLKDPDTA 324 (351)
T ss_pred ------EeCCCCcCChHHH
Confidence 9999999998875
No 19
>PRK07409 threonine synthase; Validated
Probab=99.74 E-value=1.5e-17 Score=148.96 Aligned_cols=53 Identities=26% Similarity=0.310 Sum_probs=47.1
Q ss_pred eeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC-CCCceEEE
Q 043034 78 EYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE-NDRILIVV 130 (197)
Q Consensus 78 Deiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~-~~g~~VVt 130 (197)
|+++.|+|+|+++++|+|++++|+++|||||++++++++++++.. .++++||+
T Consensus 262 ~~~v~Vsd~e~~~a~~~l~~~egi~v~pssa~alaa~~~~~~~~~~~~~~~VV~ 315 (353)
T PRK07409 262 GLIDAVTDEEILEAYRLLARKEGVFCEPASAASVAGLLKAIRAGKIPEGSTVVC 315 (353)
T ss_pred CEEEEECHHHHHHHHHHHHHhCCceeCchHHHHHHHHHHHHHcCCCCCCCcEEE
Confidence 468999999999999999999999999999999999999887621 35778888
No 20
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=99.73 E-value=2.5e-17 Score=146.18 Aligned_cols=53 Identities=23% Similarity=0.156 Sum_probs=46.3
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHh-----c--CCCCCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVA-----K--IPENDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA-----~--~~~~~g~~VVt 130 (197)
+|+++.|+|+|+++++|+|++++||++|||||++++|+++.. + ++ .++++||+
T Consensus 237 ~~~~v~Vsd~e~~~a~~~l~~~~gi~~~~ssaa~laa~~~~~~~~~~~~~~~-~~~~~Vv~ 296 (316)
T cd06448 237 NIKSEVVSDRDAVQACLRFADDERILVEPACGAALAVVYSGKILDLQLEVLL-TPLDNVVV 296 (316)
T ss_pred CCeEEEECHHHHHHHHHHHHHHcCceechhHHHHHHHHHhCcchhhhccccc-CCCCeEEE
Confidence 688999999999999999999999999999999999998632 1 12 36789999
No 21
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=99.71 E-value=1e-16 Score=141.01 Aligned_cols=54 Identities=30% Similarity=0.291 Sum_probs=48.4
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC-CCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE-NDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~-~~g~~VVt 130 (197)
.|+++.|+|+|+++++|+|++++|+++|||||++++++++++++.. .++++||+
T Consensus 261 ~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~l~~~~~~~~~~~Vv~ 315 (324)
T cd01563 261 GGTAVAVSDEEILEAQKLLARTEGIFVEPASAASLAGLKKLREEGIIDKGERVVV 315 (324)
T ss_pred CCEEEEECHHHHHHHHHHHHhcCCceeCchHHHHHHHHHHHHHcCCCCCCCcEEE
Confidence 3689999999999999999999999999999999999999987632 35788999
No 22
>PRK07334 threonine dehydratase; Provisional
Probab=99.71 E-value=1.9e-17 Score=151.04 Aligned_cols=52 Identities=15% Similarity=0.024 Sum_probs=48.3
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt 130 (197)
+|+++.|+|+|+++++|+|++++|+++|||||++++|++++.++. ++++||+
T Consensus 249 ~d~~v~V~d~e~~~a~~~l~~~~gi~v~~s~a~~~aa~~~~~~~~--~~~~vv~ 300 (403)
T PRK07334 249 VDDILLVSEADIEQAVSLLLEIEKTVVEGAGAAGLAALLAYPERF--RGRKVGL 300 (403)
T ss_pred CCeEEEECHHHHHHHHHHHHHhcCCEEechHHHHHHHHHhCchhc--CCCeEEE
Confidence 899999999999999999999999999999999999999877654 5779999
No 23
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=99.71 E-value=7.5e-17 Score=145.68 Aligned_cols=65 Identities=35% Similarity=0.427 Sum_probs=60.9
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccccccceecccccCCCCCCccc
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCS 156 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~ 156 (197)
+|+++.|+|+|+++++|+|+++|||++|||||++++++++++++. +++++||+
T Consensus 300 ~d~~v~V~d~e~~~a~r~la~~eGi~~epssgaalAa~~~~~~~~-~~~~~Vv~-------------------------- 352 (365)
T cd06446 300 RVEYVAVTDEEALEAFKLLARTEGIIPALESSHAIAYAIKLAKKL-GKEKVIVV-------------------------- 352 (365)
T ss_pred CceEEEeChHHHHHHHHHHHHhcCceeCccchHHHHHHHHHHHhc-CCCCeEEE--------------------------
Confidence 578999999999999999999999999999999999999999876 36789999
Q ss_pred cccccceeeeccCCccccCc
Q 043034 157 LHEACHQFLLPSGGERYLST 176 (197)
Q Consensus 157 ~~~~~~~~i~~d~g~rYlst 176 (197)
|+||+|.||++|
T Consensus 353 --------i~~g~G~k~~~~ 364 (365)
T cd06446 353 --------NLSGRGDKDLQT 364 (365)
T ss_pred --------EeCCCCcccccc
Confidence 999999999987
No 24
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=99.71 E-value=8.7e-17 Score=148.45 Aligned_cols=53 Identities=26% Similarity=0.299 Sum_probs=49.3
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt 130 (197)
.|+++.|+|+||++++++|+++|||++|+|||+++++++++++++. ++++||+
T Consensus 328 ~~~~v~VtD~eal~a~~~La~~eGIi~~~~sa~alA~a~~~a~~l~-~~~~VVv 380 (402)
T PRK13028 328 RVEYVTATDEEALDAFFLLSRTEGIIPALESSHAVAYAIKLAPELS-KDETILV 380 (402)
T ss_pred CcEEEEECHHHHHHHHHHHHHhcCCeeccHHHHHHHHHHHhhhhcC-CCCeEEE
Confidence 5899999999999999999999999999999999999999998864 6788888
No 25
>PLN02618 tryptophan synthase, beta chain
Probab=99.68 E-value=2.3e-16 Score=146.11 Aligned_cols=53 Identities=28% Similarity=0.365 Sum_probs=49.5
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt 130 (197)
+|+++.|+|+||++++++|+++|||++|+|||+++++|+++++++. ++++||+
T Consensus 337 ~~~~v~VtD~Eal~a~~~La~~eGIi~~~sSa~a~a~a~~~a~~l~-~~~~iVv 389 (410)
T PLN02618 337 RAEYYSVTDEEALEAFQRLSRLEGIIPALETSHALAYLEKLCPTLP-DGTKVVV 389 (410)
T ss_pred CcEEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHHHhHhcC-CCCEEEE
Confidence 7899999999999999999999999999999999999999998864 6777888
No 26
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=99.67 E-value=2.6e-16 Score=143.51 Aligned_cols=65 Identities=25% Similarity=0.333 Sum_probs=60.1
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccccccceecccccCCCCCCccc
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCS 156 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~ 156 (197)
+|+++.|+|+|+++++|+|+++|||++|+|||+++++++++++++. ++++||+
T Consensus 316 ~~~~v~Vsd~e~~~a~~~la~~egi~~~~ssaaalaa~~~~~~~l~-~~~~Vv~-------------------------- 368 (385)
T TIGR00263 316 RATYEAITDDEALEAFKLLSRNEGIIPALESSHALAHLEKIAPTLP-KDQIVVV-------------------------- 368 (385)
T ss_pred CeEEEEECHHHHHHHHHHHHHhcCCeechHHHHHHHHHHHHHHhCC-CCCeEEE--------------------------
Confidence 6789999999999999999999999999999999999999988763 6889999
Q ss_pred cccccceeeeccCCccccCc
Q 043034 157 LHEACHQFLLPSGGERYLST 176 (197)
Q Consensus 157 ~~~~~~~~i~~d~g~rYlst 176 (197)
++||+|.+|+++
T Consensus 369 --------i~~g~G~~d~~~ 380 (385)
T TIGR00263 369 --------NLSGRGDKDIFT 380 (385)
T ss_pred --------EeCCCCcCCHHH
Confidence 999999999886
No 27
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=99.67 E-value=1.1e-16 Score=147.79 Aligned_cols=51 Identities=18% Similarity=0.116 Sum_probs=46.1
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIV 129 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VV 129 (197)
+|+++.|+|+|+++++|+|++++|+++|||||++++|+++++++. ++++-|
T Consensus 331 vd~~v~Vsd~ei~~a~r~La~~~gi~vepSgAa~lAAl~~~~~~~--~~~~~~ 381 (404)
T cd06447 331 LSGIYTVEDDELYRLLAMLKDSENIEVEPSAAAGFTGPAQVLSEA--EGKRYV 381 (404)
T ss_pred CCcEEEECHHHHHHHHHHHHHHcCcEEeHHHHHHHHHHHHHHHhh--hHHHhc
Confidence 999999999999999999999999999999999999999999875 344443
No 28
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=99.66 E-value=5.6e-16 Score=142.91 Aligned_cols=53 Identities=28% Similarity=0.382 Sum_probs=48.6
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt 130 (197)
.|+++.|+|+||++++++|+++|||++|++|++++++++++++++. ++++||+
T Consensus 324 ~~~~v~VtD~eal~a~~~L~~~eGIi~~~esa~AlA~a~kla~~l~-~~~~Vvv 376 (397)
T PRK04346 324 RAEYVSITDDEALEAFQLLSRLEGIIPALESSHALAYALKLAPTLG-KDQIIVV 376 (397)
T ss_pred CeEEEEECHHHHHHHHHHHHHHcCCEeccHHHHHHHHHHHhhhhcC-CCCeEEE
Confidence 6799999999999999999999999999999999999999988763 5677777
No 29
>PRK08197 threonine synthase; Validated
Probab=99.66 E-value=5e-16 Score=141.42 Aligned_cols=65 Identities=22% Similarity=0.278 Sum_probs=58.3
Q ss_pred eeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC-CCCceEEEeecccccccceecccccCCCCCCccc
Q 043034 78 EYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE-NDRILIVVSLISYKLYFSFCINSLVNQSPCPFCS 156 (197)
Q Consensus 78 Deiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~-~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~ 156 (197)
+.++.|+|+|+++++++|+++|||++|||||++++++++++++.. .++++||+
T Consensus 321 g~~v~V~d~e~~~a~~~la~~eGi~vepssaaala~~~~l~~~~~~~~~~~Vv~-------------------------- 374 (394)
T PRK08197 321 GCAIAVSDDAILAAQRELAREEGLFACPEGAATFAAARQLRESGWLKGDERVVL-------------------------- 374 (394)
T ss_pred CEEEEeCHHHHHHHHHHHHhcCCceECchHHHHHHHHHHHHHcCCcCCCCcEEE--------------------------
Confidence 457999999999999999999999999999999999999988642 35789999
Q ss_pred cccccceeeeccCCccccCc
Q 043034 157 LHEACHQFLLPSGGERYLST 176 (197)
Q Consensus 157 ~~~~~~~~i~~d~g~rYlst 176 (197)
+++++|.||+++
T Consensus 375 --------v~tG~g~k~~~~ 386 (394)
T PRK08197 375 --------FNTGSGLKYPDT 386 (394)
T ss_pred --------EeCCCCcCchhh
Confidence 999999999876
No 30
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=99.66 E-value=5e-16 Score=151.88 Aligned_cols=64 Identities=20% Similarity=0.168 Sum_probs=51.0
Q ss_pred ceeE--EEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCC---CceEEE-eecccccccc
Q 043034 77 HEYC--FQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPEND---RILIVV-SLISYKLYFS 140 (197)
Q Consensus 77 IDei--v~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~---g~~VVt-~~~~~d~~~s 140 (197)
++++ +.|+|+||++++|+|++.|||++|+|||+|+++|+++++++... +++||+ ++||||||++
T Consensus 598 ~~rv~~~~vtD~eal~a~~~La~~EGIipa~eS~hAva~a~~~a~~~~~~~~~~~~Vv~~lsg~GdKdl~ 667 (695)
T PRK13802 598 IGRVNYSWATDEEAMNAFKDLCETEGIIPAIESSHAVAGAYKAAADLKAKGYEHPVMIVNISGRGDKDMN 667 (695)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHcCccccchHHHHHHHHHHHHHhcccccCCCCEEEEEECCCCcCCHH
Confidence 4555 89999999999999999999999999999999999999876421 446777 2444444444
No 31
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=99.66 E-value=4.4e-16 Score=134.92 Aligned_cols=52 Identities=21% Similarity=0.099 Sum_probs=49.0
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt 130 (197)
+|+++.|+|+|+++++|+|+++||+++|||||++++++++++++. ++++||+
T Consensus 245 ~~~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~a~a~~~~~~~~~--~~~~vv~ 296 (304)
T cd01562 245 VDDVVTVSEDEIAAAMLLLFEREKLVAEPAGALALAALLSGKLDL--KGKKVVV 296 (304)
T ss_pred CCeEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHhCcccc--CCCeEEE
Confidence 789999999999999999999999999999999999999998875 5788999
No 32
>PLN02970 serine racemase
Probab=99.65 E-value=8.9e-16 Score=136.75 Aligned_cols=54 Identities=15% Similarity=0.055 Sum_probs=45.5
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCC---CCCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIP---ENDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~---~~~g~~VVt 130 (197)
+|+++.|+|+|+++++|+|++++|+++|||||++++++++.+.+. ..++++||+
T Consensus 254 ~d~~v~V~d~e~~~a~~~la~~~gi~ve~s~aa~laaa~~~~~~~~~~~~~~~~vv~ 310 (328)
T PLN02970 254 VDDVITVDDKEIIEAMKLCYERLKVVVEPSGAIGLAAALSDSFRSNPAWKGCKNVGI 310 (328)
T ss_pred CCEEEEECHHHHHHHHHHHHHhcCcEEeHHHHHHHHHHHhCcccccccccCCCeEEE
Confidence 799999999999999999999999999999999999988755431 112467777
No 33
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=99.65 E-value=7.5e-16 Score=143.36 Aligned_cols=44 Identities=18% Similarity=0.156 Sum_probs=42.3
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcC
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKI 120 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~ 120 (197)
+|+++.|+|+|+++++++|++++||++|||||++++++.++++.
T Consensus 349 vd~vv~VsD~ei~~a~~~L~~~egi~vEpSsaa~laa~~~l~~~ 392 (431)
T TIGR02035 349 LSGIYTVDDYTLYDLLRILAESEGKRLEPSALAGMEGPVRLLKY 392 (431)
T ss_pred CCeEEEECHHHHHHHHHHHHHHcCCeEcHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999988875
No 34
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=99.65 E-value=2e-15 Score=127.30 Aligned_cols=122 Identities=36% Similarity=0.390 Sum_probs=88.6
Q ss_pred CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-ec----------------ccccC-------
Q 043034 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-PT----------------RHLHH------- 56 (197)
Q Consensus 1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-p~----------------~h~~p------- 56 (197)
|+..|+++|.+ |+++ ||++||||+|.++|++|+ .+|+|++++ |. .+..+
T Consensus 38 ~l~~a~~~g~~-~~~~-vv~~ssGN~g~alA~~a~-----~~g~~~~v~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~ 110 (244)
T cd00640 38 LILLAEEEGKL-PKGV-IIESTGGNTGIALAAAAA-----RLGLKCTIVMPEGASPEKVAQMRALGAEVVLVPGDFDDAI 110 (244)
T ss_pred HHHHHHHcCCC-CCCE-EEEeCCcHHHHHHHHHHH-----HcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 46788999988 8887 999999999999999999 999999998 10 00000
Q ss_pred ----------CCcceecc-------------------cccc---cccccccc-----------------------ce-eE
Q 043034 57 ----------SEYVVLSH-------------------VVMG---KHLIQASC-----------------------HE-YC 80 (197)
Q Consensus 57 ----------~~~~~~~~-------------------~~~~---~~~ieGiG-----------------------ID-ei 80 (197)
.+...+.. ...+ .+.+-..| ++ ++
T Consensus 111 ~~a~~~~~~~~~~~~~~~~~n~~~~~g~~~~~~Ei~~q~~~~~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~~~ 190 (244)
T cd00640 111 ALAKELAEEDPGAYYVNQFDNPANIAGQGTIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEPEV 190 (244)
T ss_pred HHHHHHHHhCCCCEecCCCCCHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEeeeE
Confidence 00000000 0000 01111111 22 68
Q ss_pred EEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034 81 FQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV 130 (197)
Q Consensus 81 v~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt 130 (197)
+.|+|+|+++++++|++++|+++|||||++++++++++++. .++++||+
T Consensus 191 ~~v~d~~~~~a~~~l~~~~gi~~~pssa~~~aa~~~~~~~~-~~~~~vv~ 239 (244)
T cd00640 191 VTVSDEEALEAIRLLAREEGILVEPSSAAALAAALKLAKKL-GKGKTVVV 239 (244)
T ss_pred EEECHHHHHHHHHHHHHHcCceECHhHHHHHHHHHHHHHhc-CCCCEEEE
Confidence 89999999999999999999999999999999999999886 35778888
No 35
>PRK08246 threonine dehydratase; Provisional
Probab=99.64 E-value=9.9e-16 Score=135.51 Aligned_cols=53 Identities=25% Similarity=0.153 Sum_probs=47.0
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt 130 (197)
+|+++.|+|+|+++++++|++++|+++|||||++++++++...+. .++++||+
T Consensus 245 ~~~~~~Vsd~e~~~a~~~l~~~egi~~e~s~aa~lAa~~~~~~~~-~~~~~vv~ 297 (310)
T PRK08246 245 VVTSVLVSDEAIIAARRALWEELRLAVEPGAATALAALLSGAYVP-APGERVAV 297 (310)
T ss_pred CCeEEEECHHHHHHHHHHHHHHcCceeehHHHHHHHHHHhCCccc-cCCCeEEE
Confidence 899999999999999999999999999999999999887655443 35778988
No 36
>PRK06110 hypothetical protein; Provisional
Probab=99.63 E-value=1.6e-15 Score=134.44 Aligned_cols=52 Identities=12% Similarity=0.052 Sum_probs=48.0
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt 130 (197)
+|+++.|+|+|+++++|+|++++|+++|||||+++++++++.++. ++++||+
T Consensus 249 ~d~~~~Vsd~e~~~a~~~l~~~~gi~~e~ssaa~laa~~~~~~~~--~~~~Vv~ 300 (322)
T PRK06110 249 ADRIVRVTDDEVAAAMRAYFTDTHNVAEGAGAAALAAALQERERL--AGKRVGL 300 (322)
T ss_pred CCeEEEECHHHHHHHHHHHHHHcCcEEehHHHHHHHHHHhChhhh--CCCcEEE
Confidence 899999999999999999999999999999999999999987654 5778888
No 37
>PRK07048 serine/threonine dehydratase; Validated
Probab=99.63 E-value=1.5e-15 Score=134.30 Aligned_cols=52 Identities=17% Similarity=0.123 Sum_probs=48.0
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt 130 (197)
+|+++.|+|+|+++++|+|++++|+++|||||+++++++++.++. ++++||+
T Consensus 252 ~d~~~~V~d~e~~~a~~~l~~~~gi~~eps~a~~laa~~~~~~~~--~~~~vv~ 303 (321)
T PRK07048 252 VDDIVTVSDAELVDAMRFFAERMKIVVEPTGCLGAAAALRGKVPL--KGKRVGV 303 (321)
T ss_pred CCceEEECHHHHHHHHHHHHHhCCceeccHHHHHHHHHHhCchhc--CCCeEEE
Confidence 899999999999999999999999999999999999999877653 5778888
No 38
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=99.63 E-value=1.8e-15 Score=145.65 Aligned_cols=53 Identities=25% Similarity=0.286 Sum_probs=48.5
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt 130 (197)
.++++.|+|+||++++++|++.|||++|+|||+++++++++++++. ++++||+
T Consensus 536 ~~~~v~Vtd~ea~~a~~~La~~eGi~~~~ssa~alA~~~~~~~~~~-~~~~Vvv 588 (610)
T PRK13803 536 RAIYTSVTDEEALDAFKLLAKLEGIIPALESSHALAYLKEGRKKFK-KKDIVIV 588 (610)
T ss_pred CeEEEEECHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHHhchhcC-CCCeEEE
Confidence 4579999999999999999999999999999999999999987764 5778888
No 39
>PRK06815 hypothetical protein; Provisional
Probab=99.62 E-value=2.2e-15 Score=133.32 Aligned_cols=52 Identities=25% Similarity=0.210 Sum_probs=48.8
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt 130 (197)
+|+++.|+|+|+++++++|++++||++|||||++++++++++++. ++++||+
T Consensus 249 ~~~~~~V~d~e~~~a~~~la~~~gi~vepssg~alaa~~~~~~~~--~~~~vv~ 300 (317)
T PRK06815 249 IDQKVLVSEEEIKEAMRLIAETDRWLIEGAAGVALAAALKLAPRY--QGKKVAV 300 (317)
T ss_pred CCeEEEECHHHHHHHHHHHHHhcCCeEecHHHHHHHHHHhCchhc--CCCcEEE
Confidence 799999999999999999999999999999999999999988764 5789999
No 40
>PRK08329 threonine synthase; Validated
Probab=99.62 E-value=4.7e-15 Score=133.20 Aligned_cols=52 Identities=25% Similarity=0.293 Sum_probs=45.4
Q ss_pred eeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC-CCCceEEE
Q 043034 78 EYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE-NDRILIVV 130 (197)
Q Consensus 78 Deiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~-~~g~~VVt 130 (197)
+.++.|+|+|+++++++|++ +||++|||||++++++++++++.. .++++||+
T Consensus 285 g~~~~V~d~e~~~a~~~l~~-~Gi~vepssa~a~Aa~~~l~~~g~i~~~~~Vv~ 337 (347)
T PRK08329 285 GFCISVGEEETRAALHWLRR-MGFLVEPTSAVALAAYWKLLEEGLIEGGSKVLL 337 (347)
T ss_pred CEEEEECHHHHHHHHHHHHh-cCceECccHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 45799999999999999996 899999999999999999998743 35677777
No 41
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=99.61 E-value=3.3e-15 Score=138.38 Aligned_cols=73 Identities=25% Similarity=0.210 Sum_probs=61.6
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccccccceecccccCCCCCCccc
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCS 156 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~ 156 (197)
+++++.|+|+|+++++|+|+++|||++|||||++++++++++++...+++..|+
T Consensus 344 ~~~~~~V~d~e~~~a~r~la~~eGi~~epssa~alaaai~~a~~~~~~~~~~vv-------------------------- 397 (419)
T TIGR01415 344 IVEARAYDQEEAFEAAVIFAKTEGIVPAPESAHAIAAAIDEARKCRETGEEKVI-------------------------- 397 (419)
T ss_pred ceEEEEECHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhcCcCCCCeEE--------------------------
Confidence 356789999999999999999999999999999999999999876433566666
Q ss_pred cccccceeeeccCCccccCcccCchhH
Q 043034 157 LHEACHQFLLPSGGERYLSTELFDSIT 183 (197)
Q Consensus 157 ~~~~~~~~i~~d~g~rYlst~~~~~~~ 183 (197)
+++++|..|++...|++++
T Consensus 398 --------v~~lsG~G~~d~~~y~~~~ 416 (419)
T TIGR01415 398 --------LFNLSGHGLLDLKAYAKYL 416 (419)
T ss_pred --------EEEcCCCCcCCHHHHHHHh
Confidence 6778899999887776654
No 42
>PLN02569 threonine synthase
Probab=99.60 E-value=5.3e-15 Score=139.38 Aligned_cols=52 Identities=21% Similarity=0.167 Sum_probs=45.9
Q ss_pred ee-EEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC-CCCceEEE
Q 043034 78 EY-CFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE-NDRILIVV 130 (197)
Q Consensus 78 De-iv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~-~~g~~VVt 130 (197)
|. ++.|+|+|+++++++ ++++||++|||||++++|+++++++.. .++.+||+
T Consensus 379 ~g~~v~VsDeEi~~a~~~-a~~~Gi~vepssAaalAal~kl~~~g~i~~~~~VV~ 432 (484)
T PLN02569 379 NGIVEEATEEELMDAQAE-ADKTGMFLCPHTGVALAALKKLRASGVIGPTDRTVV 432 (484)
T ss_pred CCEEEEECHHHHHHHHHH-HHHCCcEECchHHHHHHHHHHHHHcCCCCCCCcEEE
Confidence 44 699999999999999 999999999999999999999988642 35778999
No 43
>PRK08638 threonine dehydratase; Validated
Probab=99.60 E-value=5.1e-15 Score=132.77 Aligned_cols=54 Identities=15% Similarity=0.061 Sum_probs=42.5
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt 130 (197)
+|+++.|+|+|+++++++|++++|+++|+|+|++++++.....+...++++||+
T Consensus 255 ~d~~v~Vsd~ea~~a~~~l~~~~gi~~e~sgA~~~Aa~~~~~~~~~~~~~~vv~ 308 (333)
T PRK08638 255 VDDIVLVSEDEIRNAMKDLIQRNKVVTEGAGALATAALLSGKLDQYIQNKKVVA 308 (333)
T ss_pred CCeEEEECHHHHHHHHHHHHHHcCCeechhHHHHHHHHHhCCcccccCCCcEEE
Confidence 899999999999999999999999999998777765554322111125778999
No 44
>PRK08198 threonine dehydratase; Provisional
Probab=99.59 E-value=5.3e-15 Score=134.42 Aligned_cols=52 Identities=19% Similarity=0.089 Sum_probs=46.7
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt 130 (197)
+|+++.|+|+|+++++++|++++|+++|||+|++++|++++.+. .++++||+
T Consensus 250 ~d~~v~V~d~e~~~a~~~l~~~~g~~~e~sga~~lAal~~~~~~--~~~~~vv~ 301 (404)
T PRK08198 250 VDDVVTVSDEEIARAILLLLERAKLVVEGAGAVSVAALLSGKLD--VKGKKVVA 301 (404)
T ss_pred CCEEEEECHHHHHHHHHHHHHhcCeEEehHHHHHHHHHHhchhh--cCCCeEEE
Confidence 89999999999999999999999999999999999888887632 25788988
No 45
>PRK07591 threonine synthase; Validated
Probab=99.58 E-value=1.3e-14 Score=133.82 Aligned_cols=53 Identities=25% Similarity=0.245 Sum_probs=47.2
Q ss_pred eeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC-CCCceEEE
Q 043034 78 EYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE-NDRILIVV 130 (197)
Q Consensus 78 Deiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~-~~g~~VVt 130 (197)
++++.|+|+|++++++.|++++||++|||||++++++++++++.. .++++||+
T Consensus 331 g~~v~Vsd~ei~~a~~~la~~eGi~~epssaaalAal~~l~~~g~i~~~~~VV~ 384 (421)
T PRK07591 331 GAIEDVTDEEIIEGIKLLARTEGIFTETAGGVTVAVLKKLVEAGKIDPDEETVV 384 (421)
T ss_pred CEEEEECHHHHHHHHHHHHhcCCeeecchHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 369999999999999999999999999999999999999988532 36778888
No 46
>PRK06260 threonine synthase; Validated
Probab=99.57 E-value=1.6e-14 Score=131.66 Aligned_cols=53 Identities=30% Similarity=0.293 Sum_probs=47.5
Q ss_pred eeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC-CCCceEEE
Q 043034 78 EYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE-NDRILIVV 130 (197)
Q Consensus 78 Deiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~-~~g~~VVt 130 (197)
++++.|+|+|+++++++|++++|+++|||||++++|+++++++.. .++++||+
T Consensus 308 g~~v~V~d~e~~~a~~~la~~eGi~vepssaaalAa~~~l~~~g~i~~~~~VV~ 361 (397)
T PRK06260 308 GTAEAVSDEEILDAQKLLARKEGIGVEPASAASVAGLIKLVEEGVIDKDERVVC 361 (397)
T ss_pred CEEEEECHHHHHHHHHHHHHhCCCeeCchHHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 579999999999999999999999999999999999999988642 35778888
No 47
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=99.57 E-value=1.5e-14 Score=130.42 Aligned_cols=52 Identities=19% Similarity=0.105 Sum_probs=46.5
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt 130 (197)
+|+++.|+|+|+.+++++|++++|+++|||||++++++++.... .++++||+
T Consensus 228 vd~~v~V~d~e~~~a~~~l~~~~gi~~e~s~a~~laa~~~~~~~--~~~~~vv~ 279 (380)
T TIGR01127 228 VDDVVTVDEEEIANAIYLLLERHKILAEGAGAAGVAALLEQKVD--VKGKKIAV 279 (380)
T ss_pred CCEEEEECHHHHHHHHHHHHHhcCeEechHHHHHHHHHHhCccc--cCCCeEEE
Confidence 89999999999999999999999999999999999999875433 25778888
No 48
>PRK06382 threonine dehydratase; Provisional
Probab=99.56 E-value=1.2e-14 Score=132.95 Aligned_cols=52 Identities=13% Similarity=0.121 Sum_probs=43.8
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt 130 (197)
+|+++.|+|+|+++++++|++++|+++|||||++++|+++... ..++++||+
T Consensus 253 ~d~~v~V~d~ei~~a~~~l~~~~gi~~epsga~~laal~~~~~--~~~~~~Vv~ 304 (406)
T PRK06382 253 VDDIVTVTEESVSKAIYKLFEREKIVAEPSGAVGLAAIMEGKV--DVKGKKVAI 304 (406)
T ss_pred CCEEEEECHHHHHHHHHHHHHHcCceechHHHHHHHHHHhccc--cCCCCEEEE
Confidence 8999999999999999999999999999999888876654322 235778888
No 49
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=99.56 E-value=1.4e-14 Score=132.95 Aligned_cols=54 Identities=13% Similarity=0.099 Sum_probs=46.6
Q ss_pred ceeEEEcCcHHHHHHHHHHHH----HhCCeeeehhHHHHHHHHHHhcC---------CC-CCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAH----KEGLLVGISSDAAAAASIKVAKI---------PE-NDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr----~EGI~VG~SSGAaLAAAlklA~~---------~~-~~g~~VVt 130 (197)
+|+++.|+|+|+++++|+|++ ++|+++|||||++++|+++++++ .. .++++||+
T Consensus 310 ~d~~v~VsD~ei~~a~r~La~~~~~~~gi~vepsgAa~lAa~~~~~~~~~~~~~~~~~~i~~~~~Vv~ 377 (399)
T PRK08206 310 ADAFISCPDEVAALGMRILANPLGGDPPIVSGESGAVGLGALAALMTDPDYQELREKLGLDEDSRVLL 377 (399)
T ss_pred CCEEEEECHHHHHHHHHHHhcccCCCCCeeecchHHHHHHHHHHHHhcchhhHHHHhcCCCCCCEEEE
Confidence 799999999999999999996 78999999999999999976522 11 35788999
No 50
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=99.56 E-value=1.8e-14 Score=133.97 Aligned_cols=73 Identities=23% Similarity=0.217 Sum_probs=59.6
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccccccceecccccCCCCCCccc
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCS 156 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~ 156 (197)
+++++.|+|+|+++++++|++.|||++|||||++++++++++++....++..++
T Consensus 353 ~~~~~~V~d~e~~~a~~~~a~~eGi~~~pss~~alaaa~~~a~~~~~~~~~~~i-------------------------- 406 (427)
T PRK12391 353 LIEARAYPQTEVFEAAVLFARTEGIVPAPESSHAIAAAIDEALKAKEEGEEKVI-------------------------- 406 (427)
T ss_pred ceEEEEECHHHHHHHHHHHHHHcCCeechHHHHHHHHHHHHHHhccccCCCCEE--------------------------
Confidence 357789999999999999999999999999999999999998763212233345
Q ss_pred cccccceeeeccCCccccCcccCchhH
Q 043034 157 LHEACHQFLLPSGGERYLSTELFDSIT 183 (197)
Q Consensus 157 ~~~~~~~~i~~d~g~rYlst~~~~~~~ 183 (197)
+++++|.+|+++..|++|+
T Consensus 407 --------v~~lsG~G~~d~~~y~~~l 425 (427)
T PRK12391 407 --------LFNLSGHGLLDLAAYDAYL 425 (427)
T ss_pred --------EEEeCCCCCCCHHHHHHHh
Confidence 5568899999988887764
No 51
>PRK02991 D-serine dehydratase; Provisional
Probab=99.55 E-value=3e-14 Score=132.96 Aligned_cols=54 Identities=22% Similarity=0.207 Sum_probs=46.7
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCC------C-C---CCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIP------E-N---DRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~------~-~---~g~~VVt 130 (197)
+|+++.|+|+|+++++++|++++|+++|||||++++++++++++. . . ++++||+
T Consensus 354 vd~~v~VsD~ei~~a~~~L~~~~gi~vEpS~AaalAa~~~l~~~~~~~~~~~l~~~~~~~~vv~ 417 (441)
T PRK02991 354 LDGVYTVSDETLYRLLGLLADTEGIRLEPSALAGMAGPVRVCASVAYLQRHGLSEQLKNATHLV 417 (441)
T ss_pred CCeEEEECHHHHHHHHHHHHHhcCceeeHHHHHHHHHHHHHHhCHHHHHHcCCccccCCCEEEE
Confidence 899999999999999999999999999999999999998766531 1 1 4677777
No 52
>PRK06381 threonine synthase; Validated
Probab=99.54 E-value=5.2e-14 Score=123.99 Aligned_cols=51 Identities=31% Similarity=0.283 Sum_probs=46.0
Q ss_pred eEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034 79 YCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV 130 (197)
Q Consensus 79 eiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt 130 (197)
+++.|+|+|+++++|+|+++|||++|||||++++++++++++.. .+++||+
T Consensus 262 ~~~~v~d~e~~~a~~~la~~egi~~epssa~alaa~~~~~~~~~-~~~~vv~ 312 (319)
T PRK06381 262 YAFGFSDDEMVKYAELLRRMEGLNALPASASALAALVKYLKKNG-VNDNVVA 312 (319)
T ss_pred EEEEECHHHHHHHHHHHHHhCCcccCchHHHHHHHHHHHHHcCC-CCCcEEE
Confidence 79999999999999999999999999999999999999998753 2467777
No 53
>PRK08813 threonine dehydratase; Provisional
Probab=99.53 E-value=7.1e-14 Score=127.08 Aligned_cols=48 Identities=23% Similarity=0.107 Sum_probs=42.7
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt 130 (197)
+|+++.|+|+|+++++++|++++|+++|||||++++|++++ ++++||+
T Consensus 256 vd~vv~Vsd~ei~~a~~~l~~~~gl~vE~aga~alAa~~~~------~~~~v~~ 303 (349)
T PRK08813 256 LDDVVIVREAELRETLVRLALEEHVIAEGAGALALAAGRRV------SGKRKCA 303 (349)
T ss_pred CCeEEEECHHHHHHHHHHHHHHcCcEEEEcHHHHHHHHHHh------CCCCEEE
Confidence 89999999999999999999999999999999999998763 2445655
No 54
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=99.53 E-value=1.2e-13 Score=121.76 Aligned_cols=54 Identities=28% Similarity=0.304 Sum_probs=47.9
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC-CCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE-NDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~-~~g~~VVt 130 (197)
+|+++.|+|+|+++++|+|++++||++|||||++++++++++++.. .++++||+
T Consensus 263 ~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~~~~~~~~~~~~~vv~ 317 (328)
T TIGR00260 263 NGNAEDVSDEEILEAIKLLAREEGYFVEPHSAVSVAALLKLVEKGTADPAERVVC 317 (328)
T ss_pred CCcEEecCHHHHHHHHHHHHHhcCeeECchHHHHHHHHHHHHhCCCCCCCCcEEE
Confidence 5789999999999999999999999999999999999999987632 35677777
No 55
>PRK07476 eutB threonine dehydratase; Provisional
Probab=99.52 E-value=6.9e-14 Score=124.05 Aligned_cols=52 Identities=17% Similarity=0.053 Sum_probs=44.2
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt 130 (197)
+|+++.|+|+|+++++++|++++|+++||||++++++.++. +...++++||+
T Consensus 249 ~d~~~~V~d~e~~~a~~~l~~~~gi~ve~a~a~~laal~~~--~~~~~~~~Vvv 300 (322)
T PRK07476 249 LDDVVLLDEAEIAAGIRHAYREERLVVEGAGAVGIAALLAG--KIAARDGPIVV 300 (322)
T ss_pred CCeEEEECHHHHHHHHHHHHHhcCceEeChhHHHHHHHHhC--CcccCCCcEEE
Confidence 89999999999999999999999999999999999988743 22223467887
No 56
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=99.52 E-value=6e-14 Score=128.98 Aligned_cols=62 Identities=13% Similarity=0.035 Sum_probs=51.5
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccccccc
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFS 140 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d~~~s 140 (197)
+|+++.|+|+|+++++++|++++|+++|||||++++|++++.++. ++++||++.-+|.-|++
T Consensus 248 vd~vv~V~d~e~~~a~~~l~~~~gi~ve~agaa~lAa~~~~~~~~--~~~~Vv~ilsGgn~d~~ 309 (409)
T TIGR02079 248 PDEVTLVPEGAVCTTILDLYNLEGIVAEPAGALSIAALERLGEEI--KGKTVVCVVSGGNNDIE 309 (409)
T ss_pred CCcEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhhhhhc--CCCeEEEEECCCCCCHH
Confidence 899999999999999999999999999999999999999877653 57788883223444443
No 57
>PRK08639 threonine dehydratase; Validated
Probab=99.50 E-value=1.5e-13 Score=126.53 Aligned_cols=62 Identities=15% Similarity=0.030 Sum_probs=51.3
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccccccc
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFS 140 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d~~~s 140 (197)
+|+++.|+|+|+++++++|++++|+++|||||++++|+++++++. ++++||++.-+|..|++
T Consensus 259 vd~~v~V~d~ei~~a~~~l~~~~gi~~e~sga~~lAal~~~~~~~--~~~~vv~v~sGgn~d~~ 320 (420)
T PRK08639 259 VDDVVLVPEGAVCTTILELYNKEGIVAEPAGALSIAALELYKDEI--KGKTVVCVISGGNNDIE 320 (420)
T ss_pred CCeEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhhhhhc--CCCeEEEEeCCCCCCHH
Confidence 899999999999999999999999999999999999998876554 57788883223444444
No 58
>PRK05638 threonine synthase; Validated
Probab=99.47 E-value=4.9e-13 Score=123.68 Aligned_cols=51 Identities=25% Similarity=0.300 Sum_probs=40.4
Q ss_pred eEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC-CCCceEEE
Q 043034 79 YCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE-NDRILIVV 130 (197)
Q Consensus 79 eiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~-~~g~~VVt 130 (197)
.++.|+|+++.++.+.|+ ++||++|||||++++++++++++.. .++++||+
T Consensus 298 ~~~~v~d~~i~~a~~~l~-~eGi~~epssaaa~Aa~~~~~~~g~i~~~~~Vv~ 349 (442)
T PRK05638 298 TAVVVNEEEIMAGEKLLA-KEGIFAELSSAVVMPALLKLGEEGYIEKGDKVVL 349 (442)
T ss_pred EEEEECHHHHHHHHHHHH-hcCceecchHHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 466777777766665555 5899999999999999999998742 36788998
No 59
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=99.47 E-value=2.8e-13 Score=120.41 Aligned_cols=51 Identities=16% Similarity=-0.018 Sum_probs=43.6
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt 130 (197)
+|+++.|+|+|+++++|+|++++|++++|||+++++++++...+ ++++||+
T Consensus 249 vd~~v~V~d~e~~~a~~~l~~~~g~~ve~s~a~~~Aal~~~~~~---~~~~vvv 299 (317)
T TIGR02991 249 LDEIVLVSEAEIAAGIRHAYAEEREIVEGAGAVGIAALLAGKIK---NPGPCAV 299 (317)
T ss_pred CCeEEEECHHHHHHHHHHHHHhCCcEEcchHHHHHHHHHcCccc---cCCcEEE
Confidence 99999999999999999999999999999999999888743222 3556777
No 60
>PRK08526 threonine dehydratase; Provisional
Probab=99.43 E-value=4e-13 Score=123.69 Aligned_cols=63 Identities=21% Similarity=0.086 Sum_probs=51.3
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccccccc
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFS 140 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d~~~s 140 (197)
+|+++.|+|+|+.+++++|++++|+++|||++++++++++...+. .++++||++.-+|.-+++
T Consensus 248 vd~~v~V~d~ei~~A~~~l~~~~gi~ve~aga~~lAall~~~~~~-~~~~~Vv~ilsGGnid~~ 310 (403)
T PRK08526 248 VDDFVQVDDEEIANAILFLLEKQKIVVEGAGAASVAALLHQKIDL-KKGKKIGVVLSGGNIDVQ 310 (403)
T ss_pred CCEEEEECHHHHHHHHHHHHHhcCcEeeHHHHHHHHHHHhCcccc-ccCCeEEEEECCCCCCHH
Confidence 899999999999999999999999999999999999988644333 246777775334666666
No 61
>PRK06450 threonine synthase; Validated
Probab=99.41 E-value=1.9e-12 Score=116.60 Aligned_cols=39 Identities=41% Similarity=0.466 Sum_probs=36.5
Q ss_pred eeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHH
Q 043034 78 EYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKV 117 (197)
Q Consensus 78 Deiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlkl 117 (197)
++++.|+|+|+++++++|++ +|+++|||||++++|++++
T Consensus 283 g~~v~V~d~ei~~a~~~La~-~Gi~vepssaaalAa~~~l 321 (338)
T PRK06450 283 GECIVVSDNEIVEAWKELAK-KGLLVEYSSATVYAAYKKY 321 (338)
T ss_pred CcEEEECHHHHHHHHHHHHH-cCCEEChhHHHHHHHHHHC
Confidence 37999999999999999997 6999999999999999886
No 62
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=99.39 E-value=2.3e-12 Score=110.57 Aligned_cols=54 Identities=41% Similarity=0.431 Sum_probs=46.3
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC---CCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE---NDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~---~~g~~VVt 130 (197)
+|+++.|+|+|+++++|+|++++|+++||++|++++++++++++.. +++++||+
T Consensus 246 ~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~~a~a~aa~~~~~~~~~~~~~~~~~vv~ 302 (306)
T PF00291_consen 246 VGDVVGVSDEEALEAIRELAEREGILVEPSSAAALAAALKLAERGSLAPPAGKRVVV 302 (306)
T ss_dssp TEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHTGCHTTTTSEEEE
T ss_pred cccccccchHHHHHHHHHHHHHcCcEEcHHHHHHHHHHHHHHHhCCccccCCCeEEE
Confidence 4567899999999999999999999999999999999999987753 26788888
No 63
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=99.39 E-value=1.3e-12 Score=114.55 Aligned_cols=54 Identities=17% Similarity=0.186 Sum_probs=45.6
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeee-hhHHHHHHHHHHhcCCCCCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGI-SSDAAAAASIKVAKIPENDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~-SSGAaLAAAlklA~~~~~~g~~VVt 130 (197)
.|+.+.|+|+|+++++|+|++++||++|| |||++++++++++++.+.++++||+
T Consensus 241 ~~~~~~v~d~e~~~~~~~la~~~gi~vep~~sg~~~aa~~~~~~~~~~~~~~vv~ 295 (311)
T TIGR01275 241 SGPGYGKPTSEVAEIVKKVASREGIILDPVYTGKAFYGLIDLIRKGELGEKGILF 295 (311)
T ss_pred ccCcCCCCCHHHHHHHHHHHHHhCCccCcchHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 34568899999999999999999999999 5999999999988664324567777
No 64
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=99.38 E-value=2.7e-12 Score=118.20 Aligned_cols=54 Identities=20% Similarity=0.198 Sum_probs=48.2
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC-CCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE-NDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~-~~g~~VVt 130 (197)
.++++.|+|+|+.++++.|++++|++++||||+++||++++.++.. .++++||+
T Consensus 319 ~g~~v~Vsd~eI~~A~~~l~~~~gi~vEpa~A~alAal~k~~~~g~i~~~~~Vv~ 373 (398)
T TIGR03844 319 GGQMYGVSNKEAVSAGKLFEESEGIDILPAAAVAVAALVKAVESGFIGPDDDILL 373 (398)
T ss_pred CCEEEEECHHHHHHHHHHHHhhCCccccccHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 5789999999999999999999999999999999999999887632 35778888
No 65
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=99.37 E-value=4.3e-12 Score=119.98 Aligned_cols=54 Identities=13% Similarity=0.066 Sum_probs=49.3
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt 130 (197)
+|+++.|+|+|+.++++.|++++|+++|||||++++|+++++++...++++||+
T Consensus 246 vd~vv~V~d~ei~~ai~~l~~~~gii~EpagA~~lAal~~~~~~~~~~~~~vv~ 299 (499)
T TIGR01124 246 LDDIVTVDTDEVCAAIKDLFEDTRAVAEPAGALALAGLKKYVALHGIRGQTLVA 299 (499)
T ss_pred CCEEEEECHHHHHHHHHHHHHhcCcEEechHHHHHHHHHHhhhhcCCCCCeEEE
Confidence 899999999999999999999999999999999999999988765335778888
No 66
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=99.36 E-value=2.1e-12 Score=115.18 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=47.5
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeeh-hHHHHHHHHHHhcCCC-CCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGIS-SDAAAAASIKVAKIPE-NDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~S-SGAaLAAAlklA~~~~-~~g~~VVt 130 (197)
+|+.+.|+|+|+++++|+|++++||++||+ ||.+++++++++++.. +++.+||.
T Consensus 264 ~~~~~~vsd~e~~~a~~~la~~~gi~~ep~ysg~~~aa~~~~~~~g~~~~~~~vv~ 319 (337)
T PRK12390 264 AGPEYGLPNEGTLEAIRLCARLEGMLTDPVYEGKSMHGMIDLVRKGEFPEGSKVLY 319 (337)
T ss_pred ccCCCCCCCHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCCCCCCeEEE
Confidence 678899999999999999999999999996 9999999999998643 35667666
No 67
>PRK09224 threonine dehydratase; Reviewed
Probab=99.35 E-value=4.1e-12 Score=119.99 Aligned_cols=54 Identities=11% Similarity=0.044 Sum_probs=49.2
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt 130 (197)
+|+++.|+|+|+.+++++|++++|+++|||||++++|+++++++...++++||+
T Consensus 249 vd~~v~Vsd~ei~~a~~~l~~~~~~~~epagA~~lAal~~~~~~~~~~g~~vv~ 302 (504)
T PRK09224 249 VDDVITVDTDEICAAIKDVFEDTRSIAEPAGALALAGLKKYVAQHGIEGETLVA 302 (504)
T ss_pred CCeEEEECHHHHHHHHHHHHHhcCeEEcHHHHHHHHHHHHhhhhcCCCCCeEEE
Confidence 899999999999999999999999999999999999999988764335788888
No 68
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=99.35 E-value=2.6e-12 Score=114.47 Aligned_cols=51 Identities=18% Similarity=0.137 Sum_probs=44.2
Q ss_pred eeEEEcCcHHHHHHHHHHHHHhCCeeee-hhHHHHHHHHHHhcCCCCCCceEEE
Q 043034 78 EYCFQVSSEEAIETAQQLAHKEGLLVGI-SSDAAAAASIKVAKIPENDRILIVV 130 (197)
Q Consensus 78 Deiv~VsDeEAi~aaR~LAr~EGI~VG~-SSGAaLAAAlklA~~~~~~g~~VVt 130 (197)
|++..++ +|+++++|+|+++|||++|| |||.+++++++++++.. .+++||+
T Consensus 258 ~~y~~~~-~e~~~~~~~la~~eGi~ldpvytgk~~~a~~~~~~~~~-~~~~iv~ 309 (329)
T PRK14045 258 GEYGKIT-KEVAKLIRSVGTMEGLILDPVYTGKAFYGLMDLAKKGE-LGEKILF 309 (329)
T ss_pred CCCCCCC-HHHHHHHHHHHHhhCCCCccchHHHHHHHHHHHHHcCC-CCCCEEE
Confidence 4455777 79999999999999999998 99999999999999863 3667877
No 69
>PRK12483 threonine dehydratase; Reviewed
Probab=99.35 E-value=7e-12 Score=119.41 Aligned_cols=64 Identities=14% Similarity=0.075 Sum_probs=52.8
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccccccc
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFS 140 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d~~~s 140 (197)
+|+++.|+|+|+.+++++|++++|+++|||||++++|++++.++...++++||++..++.=+++
T Consensus 266 vd~vv~Vse~ei~~ai~~l~~~~~i~vEpagAaalAal~~~~~~~~~~g~~VV~IlsGgNid~~ 329 (521)
T PRK12483 266 VDEVVTVSTDELCAAIKDIYDDTRSITEPAGALAVAGIKKYAEREGIEGQTLVAIDSGANVNFD 329 (521)
T ss_pred CCEEEEECHHHHHHHHHHHHHhCCcEEeHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCHH
Confidence 8999999999999999999999999999999999999999876643357778874333443333
No 70
>PLN02550 threonine dehydratase
Probab=99.34 E-value=1e-11 Score=119.97 Aligned_cols=55 Identities=11% Similarity=0.016 Sum_probs=48.7
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEe
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVS 131 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~ 131 (197)
+|+++.|+|+|+.+++++|++++|++++||+|+++||++++.++...++++||++
T Consensus 338 vD~vV~Vsd~eI~~Ai~~l~e~~givvEpAGA~alAall~~~~~~~~~g~~Vv~v 392 (591)
T PLN02550 338 VDGVVLVSRDAICASIKDMFEEKRSILEPAGALALAGAEAYCKYYGLKDENVVAI 392 (591)
T ss_pred CCEEEEECHHHHHHHHHHHHHHCCCEEeHHHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 8999999999999999999999999999999999999999886533356777773
No 71
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=99.33 E-value=3.6e-12 Score=111.94 Aligned_cols=54 Identities=15% Similarity=0.234 Sum_probs=47.7
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeee-hhHHHHHHHHHHhcCCC-CCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGI-SSDAAAAASIKVAKIPE-NDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~-SSGAaLAAAlklA~~~~-~~g~~VVt 130 (197)
+|+++.|+|+|+++++|+|++++||++|| |||++++++++++++.. +++++||+
T Consensus 247 ~~~~~~v~d~e~~~a~~~la~~~Gi~~ep~ytg~~~aa~~~~~~~~~~~~~~~vv~ 302 (307)
T cd06449 247 AAPEYGIPNDETIEAIKLCARLEGIITDPVYEGKSMQGMIDLVRNGEFKEGSKVLF 302 (307)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHhCCccccchHHHHHHHHHHHHhcCCCCCCCeEEE
Confidence 67789999999999999999999999999 79999999999998742 35677777
No 72
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=99.16 E-value=9.2e-11 Score=104.37 Aligned_cols=54 Identities=20% Similarity=0.268 Sum_probs=46.7
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeeh-hHHHHHHHHHHhcCCC-CCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGIS-SDAAAAASIKVAKIPE-NDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~S-SGAaLAAAlklA~~~~-~~g~~VVt 130 (197)
+|+++.|+|+|+++++|+|++++||++||+ ||++++++++++++.. .++++||+
T Consensus 258 ~~~~~~v~d~e~~~~~~~l~~~~gi~~ep~ysg~~~aa~~~~~~~~~~~~~~~Vv~ 313 (331)
T PRK03910 258 VGPGYGVPTDEMLEAVKLLARTEGILLDPVYTGKAMAGLIDLIRQGRFKKGGNVLF 313 (331)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 566799999999999999999999999996 9999999999887643 24677777
No 73
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=99.14 E-value=1.8e-10 Score=102.87 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=46.6
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeeh-hHHHHHHHHHHhcCCC-CCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGIS-SDAAAAASIKVAKIPE-NDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~S-SGAaLAAAlklA~~~~-~~g~~VVt 130 (197)
+|+.+.|+|+|+++++++|++++|++++|+ ||.+++|+++++++.. +++++||+
T Consensus 263 ~~~~~~v~d~e~~~a~~~la~~eGi~~ep~ytg~~~aa~~~~~~~g~~~~~~~vv~ 318 (337)
T TIGR01274 263 AYPEYGVPNEGTLEAIRLCAKMEGVLTDPVYEGKSMHGMIEMIRRGEFKEGSNVLY 318 (337)
T ss_pred cCCCcCCCCHHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHhcCCCCCCCEEEE
Confidence 456789999999999999999999999995 9999999999998753 35667666
No 74
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=99.12 E-value=2.7e-10 Score=104.94 Aligned_cols=38 Identities=11% Similarity=0.058 Sum_probs=35.0
Q ss_pred ceeEEEcCcHHHHHHHHHHHH----HhCCeeeehhHHHHHHH
Q 043034 77 HEYCFQVSSEEAIETAQQLAH----KEGLLVGISSDAAAAAS 114 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr----~EGI~VG~SSGAaLAAA 114 (197)
+|+++.|+|+|+++++|+|++ ++++++|||++++++++
T Consensus 310 ~d~~v~VsD~ei~~a~r~La~~~~~~~~~~~epsga~~~Aal 351 (396)
T TIGR03528 310 ASQFISCPDWVAAKGMRILGNPLKGDPRVISGESGAVGTGLL 351 (396)
T ss_pred CCeEEEECHHHHHHHHHHHhcccCCCCceeecCcHHHHHHHH
Confidence 799999999999999999998 67999999999999444
No 75
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=99.10 E-value=4e-10 Score=103.21 Aligned_cols=55 Identities=11% Similarity=0.096 Sum_probs=43.6
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHh----CCeeeehhHHHHHHHHHHh---------cCCC-CCCceEEEe
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKE----GLLVGISSDAAAAASIKVA---------KIPE-NDRILIVVS 131 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~E----GI~VG~SSGAaLAAAlklA---------~~~~-~~g~~VVt~ 131 (197)
.|+++.|+|+|+.+++++|++.. ++++|||++++++++...+ +++. .++++||+.
T Consensus 291 ~~~~v~V~D~ei~~A~~~L~~~~g~~~~i~~epaga~~la~l~~~~~~~~~~~~~~~~~~~~~~~vvvi 359 (376)
T TIGR01747 291 TSQFISAQDSVAAKGMRVLGAPYGGDPRIISGESGAVGLGLLAAVMYHPQYQSLMEKLQLDKDAVVLVI 359 (376)
T ss_pred CCEEEEcCHHHHHHHHHHHhcccCCCCeEeeeCchHHHHHHHHHHHhCchHHHHHHHcCCCCCCEEEEE
Confidence 89999999999999999999866 5999999999997776333 3322 346777773
No 76
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=98.95 E-value=5.6e-09 Score=97.42 Aligned_cols=63 Identities=25% Similarity=0.231 Sum_probs=50.9
Q ss_pred eeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE-eecccccccc
Q 043034 78 EYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV-SLISYKLYFS 140 (197)
Q Consensus 78 Deiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt-~~~~~d~~~s 140 (197)
.....|||+|++++.+.|+++||++++|+|++++++++|+.++...++.++|+ +|+.+=|+-+
T Consensus 314 g~~~~vsdeEi~~a~~~l~~~eG~~~eP~sA~ava~l~k~~~~~i~~~~~vV~v~Tg~~~K~~~ 377 (411)
T COG0498 314 GLAVAVSDEEILEAIKLLAEREGILIEPHSAVAVAALLKLREKIIDPDETVVLVLTGHGLKFPD 377 (411)
T ss_pred CceEEeCHHHHHHHHHHHHHhCCcccCccHHHHHHHHHHHHHhhcCCCCeEEEEecCCcccChh
Confidence 44899999999999999999999999999999999999999862234445554 4666666665
No 77
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=98.94 E-value=4.3e-09 Score=96.41 Aligned_cols=70 Identities=24% Similarity=0.217 Sum_probs=60.3
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccccccceecccc
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSL 146 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d~~~s~~~~~~ 146 (197)
=-+++.|+|+||+++.+.|.|.|||+.-.-|.-+++-|.|+++++..+...||.+|||||||..++++-|
T Consensus 321 Ra~y~~itD~EAl~af~~L~r~EGIIPALESsHAlA~a~kla~~~~~~~~ivvnlSGRGDKDv~tv~~~l 390 (396)
T COG0133 321 RAEYVSITDEEALEAFQLLSRLEGIIPALESSHALAYALKLAPKLPKDEIIVVNLSGRGDKDVFTVAKLL 390 (396)
T ss_pred ceeEEecChHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHhchhcCCCcEEEEEccCCCcccHHHHHHHh
Confidence 4467899999999999999999999999999999999999998875333456667999999998777654
No 78
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=98.79 E-value=3e-08 Score=90.97 Aligned_cols=53 Identities=17% Similarity=0.133 Sum_probs=47.9
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt 130 (197)
+|+++.|+|+|+.++++.|++++++.++||++++++|+++...+. .++++|++
T Consensus 256 vd~~v~V~e~ei~~am~~l~~~~~iI~EpaGAlalAal~~~~~~~-~~g~~v~~ 308 (347)
T COG1171 256 VDDIVLVDEDEICAAMRDLFERTKIIAEPAGALALAALLAGKIEP-LQGKTVVV 308 (347)
T ss_pred CCcEEEECHHHHHHHHHHHHhcCCeeccccHHHHHHHHHhhhhhh-cCCCeEEE
Confidence 999999999999999999999999999999999999999988774 35775555
No 79
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=98.71 E-value=1.2e-07 Score=88.74 Aligned_cols=53 Identities=21% Similarity=0.146 Sum_probs=47.9
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt 130 (197)
+|+++.|+|+|+.+++.+|..+|..+|+|++|++++|.+.. +....++++||.
T Consensus 295 ~d~vvvV~~~ei~aaI~~l~edek~vvEpAgaaaLaai~~~-~~~~lk~~~vv~ 347 (457)
T KOG1250|consen 295 VDRVVVVEDDEIAAAILRLFEDEKMVVEPAGAAALAAIYSG-KLNHLKGKKVVS 347 (457)
T ss_pred CceEEEeccHHHHHHHHHHHHhhhheeccchHHHHHHHHhc-cccccCCceEEe
Confidence 99999999999999999999999999999999999999988 433357888777
No 80
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=98.44 E-value=1.7e-06 Score=80.58 Aligned_cols=67 Identities=18% Similarity=0.209 Sum_probs=59.1
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEe-ecccccccceecc
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVS-LISYKLYFSFCIN 144 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~-~~~~d~~~s~~~~ 144 (197)
--+.+.|+|+|+++..++|+|.|||.-.+-+.-++++..++++++. ++++||.- +||||+|.-.+..
T Consensus 389 rae~isitd~eclegfk~~srlEGIIPAlEssHAva~~~~lck~l~-~~k~ivi~~sGrGdkDvqS~~k 456 (477)
T KOG1395|consen 389 RAEFISITDAECLEGFKQLSRLEGIIPALESSHAVAGEAELCKTLP-EDKVIVINISGRGDKDVQSVAK 456 (477)
T ss_pred ceeEEecChHHHHHHHHHHHHhcccccCCchhhHHHHHHHhccccC-CCcEEEEEecCCCCchHHHHHH
Confidence 6789999999999999999999999999999999999999999885 67776665 9999999874443
No 81
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=98.07 E-value=2.4e-05 Score=70.19 Aligned_cols=52 Identities=15% Similarity=0.068 Sum_probs=46.1
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt 130 (197)
+|++++|+|+|..++++.++.+..+.++|+++..+||++-...+. ..|+|.+
T Consensus 253 vddi~Tv~e~Ei~~~lk~~~ermK~~vEPTa~lgfAavl~~k~~~--~~K~igI 304 (323)
T KOG1251|consen 253 VDDILTVSEDEIKEALKLIWERMKVVVEPTAALGFAAVLSHKFAL--NIKRIGI 304 (323)
T ss_pred hhhheeecHHHHHHHHHHHHHHHheeeccchhHHHHHHHhhhHHh--ccCceEE
Confidence 999999999999999999999999999999999999998766554 2566666
No 82
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=97.07 E-value=0.0047 Score=57.64 Aligned_cols=54 Identities=24% Similarity=0.167 Sum_probs=47.0
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV 130 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt 130 (197)
+-+.+..+++|+|++++.+++.|||.-.|-|+.++.+|+..|.+....+...|+
T Consensus 354 iv~a~ay~Q~Evfeaa~lFa~~EGiVPAPEsaHAi~~aid~A~~a~~~geekvI 407 (432)
T COG1350 354 IVEARAYDQEEVFEAAVLFARTEGIVPAPESAHAIKAAIDEALKAREEGEEKVI 407 (432)
T ss_pred cccceecChHHHHHHHHHHHHhcCCccCCcchhhHHHHHHHHHhccccCceeEE
Confidence 778889999999999999999999999999999999999999876544544444
No 83
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=96.81 E-value=0.0031 Score=59.90 Aligned_cols=66 Identities=23% Similarity=0.233 Sum_probs=51.7
Q ss_pred eEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccccccceecccc
Q 043034 79 YCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSL 146 (197)
Q Consensus 79 eiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d~~~s~~~~~~ 146 (197)
..+.|+|+|+.++++++++++|+++.|.|+++++++.++.++. ....|+..|+.+=|+-..+...+
T Consensus 361 ~a~~vsD~ei~~~i~~~~~~~G~~vdPhtAva~aa~~~~~~~~--~~~~V~l~Ta~p~Kf~~~v~~a~ 426 (460)
T cd01560 361 SSGSVSDEETLETIREVYEETGYLIDPHTAVGVRAAERVRKSP--GTPGVVLSTAHPAKFPEAVKEAL 426 (460)
T ss_pred eEEEECHHHHHHHHHHHHHhcCEEECchHHHHHHHHHHHHhcc--CCCEEEEecCCcccCHHHHHHhh
Confidence 4589999999999999999999999999999999998877651 23445555777777666444443
No 84
>PRK09225 threonine synthase; Validated
Probab=96.72 E-value=0.0038 Score=59.32 Aligned_cols=64 Identities=17% Similarity=0.110 Sum_probs=49.2
Q ss_pred eEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccccccceeccc
Q 043034 79 YCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINS 145 (197)
Q Consensus 79 eiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d~~~s~~~~~ 145 (197)
..+.|+|+|+.++++++++++|+++.|+|+++++++.++.+. ....|+..|+.+=|+-..+...
T Consensus 358 ~a~~vsD~ei~~ai~~~~~~~G~~~dPhtAva~aa~~~~~~~---~~~~V~l~Ta~p~Kf~~~v~~a 421 (462)
T PRK09225 358 SAGSVSDEETLATIREVYEEYGYLIDPHTAVAYKAAREYLDP---GEPGVVLSTAHPAKFPEVVEEA 421 (462)
T ss_pred eEEEECHHHHHHHHHHHHHhCCEEECchHHHHHHHHHHhhCC---CCCEEEEecCCccCCHHHHHHh
Confidence 568999999999999999999999999999999999887321 2344555466666665544433
No 85
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=96.60 E-value=0.0015 Score=60.56 Aligned_cols=42 Identities=21% Similarity=0.236 Sum_probs=38.0
Q ss_pred ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHh
Q 043034 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVA 118 (197)
Q Consensus 77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA 118 (197)
.|.+++|+|+..+...++|++.||+.++||+=|.+++-.++.
T Consensus 357 L~G~~TvdD~~ly~lL~~L~~~e~~rlEPSalAgm~Gp~~~~ 398 (443)
T COG3048 357 LDGYYTVDDQTLYDLLGWLAQEEGIRLEPSALAGMAGPQRVC 398 (443)
T ss_pred hCCcEEechHHHHHHHHHHHHhcCcccCchhhhcccCcceee
Confidence 899999999999999999999999999999988887665554
No 86
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=90.98 E-value=0.32 Score=46.34 Aligned_cols=31 Identities=13% Similarity=0.088 Sum_probs=26.9
Q ss_pred CCEEEEeeCCChHHHH-HHHHHhhhHHhhcCCcEEEE
Q 043034 14 GKSILIEITSSNTGIG-LAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 14 G~t~Iie~tsgntgi~-lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+..+|+.+||||||.+ +|..++ ..|.+++++
T Consensus 131 ~~~~Il~ATSGdTG~Aa~aaf~~-----~~gi~v~Vl 162 (460)
T cd01560 131 ERITILVATSGDTGSAAIEGFRG-----KPNVDVVVL 162 (460)
T ss_pred CCeEEEEcCCCcHHHHHHHHHhC-----cCCCEEEEE
Confidence 3334999999999999 689999 999999987
No 87
>PRK09225 threonine synthase; Validated
Probab=89.54 E-value=0.45 Score=45.48 Aligned_cols=28 Identities=14% Similarity=0.120 Sum_probs=25.4
Q ss_pred EEEeeCCChHHHHH-HHHHhhhHHhhcCCcEEEE
Q 043034 17 ILIEITSSNTGIGL-AFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 17 ~Iie~tsgntgi~l-A~iaa~~~~~~~Gyk~~~~ 49 (197)
+|+.+||||||.+. |..++ ..|.+++++
T Consensus 133 ~Il~ATSGdtG~Aa~aaf~~-----~~gi~~~V~ 161 (462)
T PRK09225 133 TILGATSGDTGSAAAEAFRG-----KPNVRVVIL 161 (462)
T ss_pred EEEEcCCCcHHHHHHHHHhC-----cCCCEEEEE
Confidence 49999999999998 78888 999999987
No 88
>PF03192 DUF257: Pyrococcus protein of unknown function, DUF257; InterPro: IPR005489 This family of proteins is of unknown function.; PDB: 2EKD_C.
Probab=89.14 E-value=0.45 Score=40.97 Aligned_cols=40 Identities=28% Similarity=0.462 Sum_probs=29.0
Q ss_pred CCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 9 GLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 9 G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+.++||.+++||.+| ....-|.+...++-+..+|+++++.
T Consensus 6 ~~~k~GE~VLVEy~S-~~~~el~~~~li~~~~~~~~~vlI~ 45 (210)
T PF03192_consen 6 DSIKPGETVLVEYSS-SSPPELLFYELIKWAREKGYPVLID 45 (210)
T ss_dssp TTS-TT-EEEEEE-T-TS-THHHHHHHHH---T-SS-BEEE
T ss_pred ccCCCCCEEEEEeCC-CCcHHHHHHHHHHHhhhcCCCEEEE
Confidence 579999999999999 9999999999999999999999998
No 89
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=84.85 E-value=8 Score=34.41 Aligned_cols=38 Identities=13% Similarity=0.193 Sum_probs=29.0
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCc-EEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK-SYHC 49 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk-~~~~ 49 (197)
.++..++||++++|.+ +|..|...+.+++ .+|.+ ++.+
T Consensus 184 ~~~~~i~~g~~VlV~G-~G~vG~~a~~lak-----~~G~~~Vi~~ 222 (371)
T cd08281 184 VNTAGVRPGQSVAVVG-LGGVGLSALLGAV-----AAGASQVVAV 222 (371)
T ss_pred HhccCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCCcEEEE
Confidence 4567899999988866 5777777777777 99995 6554
No 90
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=78.69 E-value=20 Score=32.20 Aligned_cols=96 Identities=15% Similarity=0.223 Sum_probs=64.4
Q ss_pred HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEcCcH
Q 043034 7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSE 86 (197)
Q Consensus 7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~VsDe 86 (197)
+.+.++||+++||-+-||.-|..+--+++ .+|+.++.+..+-. ... ....+|-|.++...++
T Consensus 136 ~~~~l~~g~~VLV~gaaGgVG~~aiQlAk-----~~G~~~v~~~~s~~------------k~~-~~~~lGAd~vi~y~~~ 197 (326)
T COG0604 136 DRAGLKPGETVLVHGAAGGVGSAAIQLAK-----ALGATVVAVVSSSE------------KLE-LLKELGADHVINYREE 197 (326)
T ss_pred HhcCCCCCCEEEEecCCchHHHHHHHHHH-----HcCCcEEEEecCHH------------HHH-HHHhcCCCEEEcCCcc
Confidence 46889999998998888888888877888 99986665532210 011 3455667777777777
Q ss_pred HHHHHHHHHHHHhC--CeeeehhHHHHHHHHHHhcC
Q 043034 87 EAIETAQQLAHKEG--LLVGISSDAAAAASIKVAKI 120 (197)
Q Consensus 87 EAi~aaR~LAr~EG--I~VG~SSGAaLAAAlklA~~ 120 (197)
+-.+..+++...+| +..-+-++..+...++..++
T Consensus 198 ~~~~~v~~~t~g~gvDvv~D~vG~~~~~~~l~~l~~ 233 (326)
T COG0604 198 DFVEQVRELTGGKGVDVVLDTVGGDTFAASLAALAP 233 (326)
T ss_pred cHHHHHHHHcCCCCceEEEECCCHHHHHHHHHHhcc
Confidence 76677777765433 45566666666666665543
No 91
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=78.08 E-value=17 Score=32.10 Aligned_cols=38 Identities=16% Similarity=0.119 Sum_probs=27.4
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCc-EEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK-SYHC 49 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk-~~~~ 49 (197)
.+.+.++||++++|-+ +|-.|...+.+++ .+|.+ ++.+
T Consensus 169 ~~~~~~~~g~~VlV~G-~g~vG~~a~~~ak-----~~G~~~Vi~~ 207 (358)
T TIGR03451 169 VNTGGVKRGDSVAVIG-CGGVGDAAIAGAA-----LAGASKIIAV 207 (358)
T ss_pred HhccCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCCeEEEE
Confidence 4567899999977764 5666666666677 89986 5554
No 92
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=77.79 E-value=6.5 Score=33.05 Aligned_cols=65 Identities=20% Similarity=0.153 Sum_probs=42.2
Q ss_pred EEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecc-cccCCCcceeccccccccccccccceeEEEcCcHHHHHHHHHHH
Q 043034 18 LIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTR-HLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQLA 96 (197)
Q Consensus 18 Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~-h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~VsDeEAi~aaR~LA 96 (197)
|=-.+||-+|..||-.+. .+|++++++-.. ++.| |+ ++..+-..+-+|.++.++.++
T Consensus 23 ItN~SSG~~G~~lA~~~~-----~~Ga~V~li~g~~~~~~------------p~-----~~~~i~v~sa~em~~~~~~~~ 80 (185)
T PF04127_consen 23 ITNRSSGKMGAALAEEAA-----RRGAEVTLIHGPSSLPP------------PP-----GVKVIRVESAEEMLEAVKELL 80 (185)
T ss_dssp EEES--SHHHHHHHHHHH-----HTT-EEEEEE-TTS----------------T-----TEEEEE-SSHHHHHHHHHHHG
T ss_pred ecCCCcCHHHHHHHHHHH-----HCCCEEEEEecCccccc------------cc-----cceEEEecchhhhhhhhcccc
Confidence 445689999999999999 999999998211 1111 11 133444557888999999988
Q ss_pred HHhCCeee
Q 043034 97 HKEGLLVG 104 (197)
Q Consensus 97 r~EGI~VG 104 (197)
.+.-+++-
T Consensus 81 ~~~Di~I~ 88 (185)
T PF04127_consen 81 PSADIIIM 88 (185)
T ss_dssp GGGSEEEE
T ss_pred CcceeEEE
Confidence 87777664
No 93
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=74.47 E-value=7.6 Score=33.45 Aligned_cols=40 Identities=18% Similarity=0.265 Sum_probs=33.6
Q ss_pred HHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 5 AEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 5 ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+.+++.++||++++|-..+|..|..++.+++ .+|.+++.+
T Consensus 169 ~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~-----~~g~~vi~~ 208 (350)
T cd08274 169 MLERAGVGAGETVLVTGASGGVGSALVQLAK-----RRGAIVIAV 208 (350)
T ss_pred HHhhcCCCCCCEEEEEcCCcHHHHHHHHHHH-----hcCCEEEEE
Confidence 3466789999998888888999999988999 999997665
No 94
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=74.38 E-value=1.3 Score=30.17 Aligned_cols=7 Identities=71% Similarity=2.171 Sum_probs=6.1
Q ss_pred CCCCccc
Q 043034 150 SPCPFCS 156 (197)
Q Consensus 150 ~~~~~~~ 156 (197)
.|||||.
T Consensus 4 kPCPFCG 10 (61)
T PF14354_consen 4 KPCPFCG 10 (61)
T ss_pred cCCCCCC
Confidence 5999995
No 95
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=73.94 E-value=23 Score=30.92 Aligned_cols=38 Identities=18% Similarity=0.089 Sum_probs=27.8
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.+...++||++++|-+ .|..|..++.+++ .+|.+.+++
T Consensus 153 ~~~~~~~~g~~vlV~G-~g~vG~~~~~~a~-----~~G~~~v~~ 190 (347)
T PRK10309 153 FHLAQGCEGKNVIIIG-AGTIGLLAIQCAV-----ALGAKSVTA 190 (347)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCCeEEE
Confidence 4567789999977764 5777777777777 999985443
No 96
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=70.76 E-value=9.7 Score=32.86 Aligned_cols=38 Identities=16% Similarity=0.277 Sum_probs=31.0
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.+.+.+++|++++|++ +|..|..++.++. .+|.+++.+
T Consensus 157 ~~~~~~~~g~~vlI~g-~g~~g~~~~~la~-----~~G~~v~~~ 194 (306)
T cd08258 157 AERSGIRPGDTVVVFG-PGPIGLLAAQVAK-----LQGATVVVV 194 (306)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCEEEEE
Confidence 3557789999989976 6888888888888 999997654
No 97
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=70.18 E-value=10 Score=32.97 Aligned_cols=38 Identities=11% Similarity=0.197 Sum_probs=31.2
Q ss_pred HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+.+.++||++++|-..+|..|..++.+++ .+|.+++.+
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk-----~~G~~Vi~~ 182 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAK-----LKGCYVVGS 182 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHH-----HcCCEEEEE
Confidence 55789999998887777888888888888 999987654
No 98
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=69.98 E-value=10 Score=32.09 Aligned_cols=96 Identities=13% Similarity=0.090 Sum_probs=54.1
Q ss_pred HHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEcC
Q 043034 5 AEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVS 84 (197)
Q Consensus 5 ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~Vs 84 (197)
+.+.+.++||++++|-..+|..|..++.++. .+|.+++.+... ++. ...+..+|+|.++...
T Consensus 131 ~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~-----~~G~~v~~~~~~---~~~----------~~~~~~~g~~~~~~~~ 192 (324)
T cd08292 131 LLDFLGVKPGQWLIQNAAGGAVGKLVAMLAA-----ARGINVINLVRR---DAG----------VAELRALGIGPVVSTE 192 (324)
T ss_pred HHHhhCCCCCCEEEEcccccHHHHHHHHHHH-----HCCCeEEEEecC---HHH----------HHHHHhcCCCEEEcCC
Confidence 3455789999997886677778888878888 999987766210 000 0112223456666555
Q ss_pred cHHHHHHHHHHHHHhC--CeeeehhHHHHHHHHHHh
Q 043034 85 SEEAIETAQQLAHKEG--LLVGISSDAAAAASIKVA 118 (197)
Q Consensus 85 DeEAi~aaR~LAr~EG--I~VG~SSGAaLAAAlklA 118 (197)
+.+..+..+++....| +++..+++..+..+++..
T Consensus 193 ~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~l 228 (324)
T cd08292 193 QPGWQDKVREAAGGAPISVALDSVGGKLAGELLSLL 228 (324)
T ss_pred CchHHHHHHHHhCCCCCcEEEECCCChhHHHHHHhh
Confidence 5444444444443223 345555554444444443
No 99
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=69.24 E-value=12 Score=31.48 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=32.6
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.+.+.+++|++++|-..+|..|..++.++. .+|.+++.+
T Consensus 135 ~~~~~~~~~~~vlI~g~~~~~g~~~~~la~-----~~g~~v~~~ 173 (324)
T cd08244 135 LDLATLTPGDVVLVTAAAGGLGSLLVQLAK-----AAGATVVGA 173 (324)
T ss_pred HHhcCCCCCCEEEEEcCCchHHHHHHHHHH-----HCCCEEEEE
Confidence 456789999988887778888888888888 999997665
No 100
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=68.86 E-value=11 Score=29.51 Aligned_cols=37 Identities=24% Similarity=0.246 Sum_probs=23.4
Q ss_pred CCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 10 LITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 10 ~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.++||+.+|+=++|||+..-+.+ ++.|+.+|.+++.+
T Consensus 100 ~~~~gDvli~iS~SG~s~~vi~a---~~~Ak~~G~~vIal 136 (138)
T PF13580_consen 100 DIRPGDVLIVISNSGNSPNVIEA---AEEAKERGMKVIAL 136 (138)
T ss_dssp T--TT-EEEEEESSS-SHHHHHH---HHHHHHTT-EEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHH---HHHHHHCCCEEEEE
Confidence 48999998888899999755433 33366999998864
No 101
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=68.83 E-value=2 Score=29.01 Aligned_cols=10 Identities=50% Similarity=1.438 Sum_probs=7.4
Q ss_pred CCCCcccccc
Q 043034 150 SPCPFCSLHE 159 (197)
Q Consensus 150 ~~~~~~~~~~ 159 (197)
.|||||-=..
T Consensus 2 kPCPfCGg~~ 11 (53)
T TIGR03655 2 KPCPFCGGAD 11 (53)
T ss_pred CCCCCCCCcc
Confidence 5999996543
No 102
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=68.23 E-value=17 Score=32.42 Aligned_cols=32 Identities=38% Similarity=0.575 Sum_probs=25.4
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
-|.|++ +|.|.+||||++.=+ .-..|-++++|
T Consensus 4 tgnTiL--ITGG~sGIGl~lak~---f~elgN~VIi~ 35 (245)
T COG3967 4 TGNTIL--ITGGASGIGLALAKR---FLELGNTVIIC 35 (245)
T ss_pred cCcEEE--EeCCcchhhHHHHHH---HHHhCCEEEEe
Confidence 366734 599999999998766 44689999999
No 103
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=68.09 E-value=11 Score=32.42 Aligned_cols=103 Identities=12% Similarity=0.146 Sum_probs=56.9
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEcCc
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSS 85 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~VsD 85 (197)
.+.+.++||++++|-..+|..|..++.+++ .+|.+++.+-... . ....++.+|.|.++.-.+
T Consensus 131 ~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk-----~~G~~Vi~~~~s~---~----------~~~~~~~lGa~~vi~~~~ 192 (325)
T TIGR02825 131 LEICGVKGGETVMVNAAAGAVGSVVGQIAK-----LKGCKVVGAAGSD---E----------KVAYLKKLGFDVAFNYKT 192 (325)
T ss_pred HHHhCCCCCCEEEEeCCccHHHHHHHHHHH-----HcCCEEEEEeCCH---H----------HHHHHHHcCCCEEEeccc
Confidence 367889999997776667777777777777 9999877542110 0 011234566666665544
Q ss_pred HHHHHHHHHHHHHhC--CeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034 86 EEAIETAQQLAHKEG--LLVGISSDAAAAASIKVAKIPENDRILIVV 130 (197)
Q Consensus 86 eEAi~aaR~LAr~EG--I~VG~SSGAaLAAAlklA~~~~~~g~~VVt 130 (197)
.+-+....+.....| +++...++..+..+++.++. +.++|.
T Consensus 193 ~~~~~~~~~~~~~~gvdvv~d~~G~~~~~~~~~~l~~----~G~iv~ 235 (325)
T TIGR02825 193 VKSLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKK----FGRIAI 235 (325)
T ss_pred cccHHHHHHHhCCCCeEEEEECCCHHHHHHHHHHhCc----CcEEEE
Confidence 322222212221122 45555556555555555533 345555
No 104
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=67.49 E-value=14 Score=31.56 Aligned_cols=89 Identities=12% Similarity=0.173 Sum_probs=54.7
Q ss_pred HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEcCcH
Q 043034 7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSE 86 (197)
Q Consensus 7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~VsDe 86 (197)
....+++|++++|-..+|..|..++.++. .+|.+++.+-.. ..++.+|+|.++..++
T Consensus 156 ~~~~~~~g~~vlI~g~~g~vg~~~~~~a~-----~~G~~v~~~~~~-----------------~~~~~~g~~~~~~~~~- 212 (325)
T cd08264 156 KTAGLGPGETVVVFGASGNTGIFAVQLAK-----MMGAEVIAVSRK-----------------DWLKEFGADEVVDYDE- 212 (325)
T ss_pred HhcCCCCCCEEEEECCCchHHHHHHHHHH-----HcCCeEEEEeHH-----------------HHHHHhCCCeeecchH-
Confidence 44778999998887778898888888888 999987665211 1234455565554332
Q ss_pred HHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhc
Q 043034 87 EAIETAQQLAHKEGLLVGISSDAAAAASIKVAK 119 (197)
Q Consensus 87 EAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~ 119 (197)
..+..+++.+.--+++..+++..+..+++.++
T Consensus 213 -~~~~l~~~~~~~d~vl~~~g~~~~~~~~~~l~ 244 (325)
T cd08264 213 -VEEKVKEITKMADVVINSLGSSFWDLSLSVLG 244 (325)
T ss_pred -HHHHHHHHhCCCCEEEECCCHHHHHHHHHhhc
Confidence 12223333322235666666666665666554
No 105
>PRK09710 lar restriction alleviation and modification protein; Reviewed
Probab=67.41 E-value=2.2 Score=30.88 Aligned_cols=13 Identities=46% Similarity=1.170 Sum_probs=9.6
Q ss_pred CCCCCCccccccc
Q 043034 148 NQSPCPFCSLHEA 160 (197)
Q Consensus 148 ~~~~~~~~~~~~~ 160 (197)
+--|||||--..+
T Consensus 5 ~lKPCPFCG~~~~ 17 (64)
T PRK09710 5 NVKPCPFCGCPSV 17 (64)
T ss_pred cccCCCCCCCcee
Confidence 3579999976554
No 106
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=67.40 E-value=13 Score=31.62 Aligned_cols=39 Identities=15% Similarity=0.303 Sum_probs=29.8
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.+.+.++||++++|-..+|..|..+.-+++ .+|.+++.+
T Consensus 136 ~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~-----~~G~~vi~~ 174 (329)
T cd08294 136 LEICKPKAGETVVVNGAAGAVGSLVGQIAK-----IKGCKVIGC 174 (329)
T ss_pred HHhcCCCCCCEEEEecCccHHHHHHHHHHH-----HcCCEEEEE
Confidence 356889999997776667777777777777 999987655
No 107
>PRK05854 short chain dehydrogenase; Provisional
Probab=67.05 E-value=8.1 Score=33.80 Aligned_cols=31 Identities=26% Similarity=0.422 Sum_probs=23.9
Q ss_pred CCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 14 GKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 14 G~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
|+++| .|.||.|||.+++-. ++..|++++++
T Consensus 14 gk~~l--ITGas~GIG~~~a~~---La~~G~~Vil~ 44 (313)
T PRK05854 14 GKRAV--VTGASDGLGLGLARR---LAAAGAEVILP 44 (313)
T ss_pred CCEEE--EeCCCChHHHHHHHH---HHHCCCEEEEE
Confidence 55534 588889999988755 55889999887
No 108
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=66.71 E-value=9.2 Score=31.94 Aligned_cols=32 Identities=31% Similarity=0.388 Sum_probs=24.0
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+|+++| .|.|+.|||.|.+-+ ++..|++++++
T Consensus 7 ~~k~~l--ItGas~gIG~aia~~---l~~~G~~vv~~ 38 (251)
T PRK12481 7 NGKVAI--ITGCNTGLGQGMAIG---LAKAGADIVGV 38 (251)
T ss_pred CCCEEE--EeCCCchHHHHHHHH---HHHCCCEEEEe
Confidence 466644 588888888888755 45899999887
No 109
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=66.64 E-value=13 Score=33.08 Aligned_cols=94 Identities=13% Similarity=0.144 Sum_probs=54.9
Q ss_pred HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccc-cccceeEEEcCc
Q 043034 7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQ-ASCHEYCFQVSS 85 (197)
Q Consensus 7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ie-GiGIDeiv~VsD 85 (197)
+.+.++||++++|-..+|..|..+..+++ .+|.+++.+-.. +. ....+. .+|.|.++.-.+
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk-----~~G~~Vi~~~~~---~~----------k~~~~~~~lGa~~vi~~~~ 213 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAK-----LHGCYVVGSAGS---SQ----------KVDLLKNKLGFDEAFNYKE 213 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHH-----HcCCEEEEEcCC---HH----------HHHHHHHhcCCCEEEECCC
Confidence 45789999997787777888887777888 999987654110 00 001122 466677766543
Q ss_pred H-HHHHHHHHHHHHhC--CeeeehhHHHHHHHHHHhc
Q 043034 86 E-EAIETAQQLAHKEG--LLVGISSDAAAAASIKVAK 119 (197)
Q Consensus 86 e-EAi~aaR~LAr~EG--I~VG~SSGAaLAAAlklA~ 119 (197)
+ +..+..+.+.. .| +.+..+++..+..+++.++
T Consensus 214 ~~~~~~~i~~~~~-~gvD~v~d~vG~~~~~~~~~~l~ 249 (348)
T PLN03154 214 EPDLDAALKRYFP-EGIDIYFDNVGGDMLDAALLNMK 249 (348)
T ss_pred cccHHHHHHHHCC-CCcEEEEECCCHHHHHHHHHHhc
Confidence 2 33333333321 23 4556666666666666554
No 110
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=65.41 E-value=17 Score=30.41 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=31.9
Q ss_pred HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+.+.+++|++++|-..+|..|..+..++. .+|++++.+
T Consensus 136 ~~~~~~~g~~vlV~ga~g~~g~~~~~~a~-----~~g~~v~~~ 173 (320)
T cd08243 136 RSLGLQPGDTLLIRGGTSSVGLAALKLAK-----ALGATVTAT 173 (320)
T ss_pred HhcCCCCCCEEEEEcCCChHHHHHHHHHH-----HcCCEEEEE
Confidence 44678899998888888999999999999 999997665
No 111
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=65.34 E-value=20 Score=29.71 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=31.1
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.+.+.++||++++|-..+|..|..++.+++ .+|++++.+
T Consensus 132 ~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~-----~~g~~v~~~ 170 (325)
T TIGR02824 132 FQRGGLKAGETVLIHGGASGIGTTAIQLAK-----AFGARVFTT 170 (325)
T ss_pred HHhcCCCCCCEEEEEcCcchHHHHHHHHHH-----HcCCEEEEE
Confidence 467889999987776667777777777777 999997766
No 112
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=64.62 E-value=16 Score=31.54 Aligned_cols=37 Identities=11% Similarity=0.193 Sum_probs=29.0
Q ss_pred HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
....+++|++++|++ +|..|..++.++. .+|++.++.
T Consensus 162 ~~~~~~~g~~vlI~g-~g~vg~~~~~lak-----~~G~~~v~~ 198 (345)
T cd08287 162 VSAGVRPGSTVVVVG-DGAVGLCAVLAAK-----RLGAERIIA 198 (345)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCCEEEE
Confidence 456788999988865 7888888888888 999974433
No 113
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=64.19 E-value=16 Score=32.07 Aligned_cols=39 Identities=10% Similarity=0.041 Sum_probs=30.5
Q ss_pred HHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 5 AEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 5 ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
|.++..++||++++|-.. |..|..++.+++ .+|.+++.+
T Consensus 158 a~~~~~~~~g~~VlV~G~-G~vG~~a~~~a~-----~~G~~vi~~ 196 (349)
T TIGR03201 158 AAVQAGLKKGDLVIVIGA-GGVGGYMVQTAK-----AMGAAVVAI 196 (349)
T ss_pred HHHhcCCCCCCEEEEECC-CHHHHHHHHHHH-----HcCCeEEEE
Confidence 445677899999776665 888888888888 999987655
No 114
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=63.71 E-value=53 Score=30.99 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=65.9
Q ss_pred HHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEcC
Q 043034 5 AEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVS 84 (197)
Q Consensus 5 ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~Vs 84 (197)
+.++-.++||+.+-|-.-. | |--++ ++.|.++|++++.+-..+.. ....++.+|-|..+.-+
T Consensus 173 pLk~~g~~pG~~vgI~GlG---G--LGh~a-Vq~AKAMG~rV~vis~~~~k------------keea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 173 PLKRSGLGPGKWVGIVGLG---G--LGHMA-VQYAKAMGMRVTVISTSSKK------------KEEAIKSLGADVFVDST 234 (360)
T ss_pred hhHHcCCCCCcEEEEecCc---c--cchHH-HHHHHHhCcEEEEEeCCchh------------HHHHHHhcCcceeEEec
Confidence 3455556799973332222 2 22222 46667999999988543321 12346778877777666
Q ss_pred -cHHHHHHHHHHHHHhCCeeeeh--hHHHHHHHHHHhcCCCCCCceEEE
Q 043034 85 -SEEAIETAQQLAHKEGLLVGIS--SDAAAAASIKVAKIPENDRILIVV 130 (197)
Q Consensus 85 -DeEAi~aaR~LAr~EGI~VG~S--SGAaLAAAlklA~~~~~~g~~VVt 130 (197)
|.+..+.++... +|+.-+-| +=.++-.++++++. .|+.|.+
T Consensus 235 ~d~d~~~~~~~~~--dg~~~~v~~~a~~~~~~~~~~lk~---~Gt~V~v 278 (360)
T KOG0023|consen 235 EDPDIMKAIMKTT--DGGIDTVSNLAEHALEPLLGLLKV---NGTLVLV 278 (360)
T ss_pred CCHHHHHHHHHhh--cCcceeeeeccccchHHHHHHhhc---CCEEEEE
Confidence 777777777664 69999999 77788778877764 3444444
No 115
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=62.33 E-value=9 Score=28.76 Aligned_cols=42 Identities=38% Similarity=0.504 Sum_probs=21.8
Q ss_pred CHHHHHHcCCCCCC-CEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 1 MIKDAEDKGLITPG-KSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 1 mi~~ae~~G~i~pG-~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
||+....++.+ +| +.+|| ..++||.|||- ||++.+|+...-+
T Consensus 26 qI~yvk~~~~~-~GpK~VLV--iGaStGyGLAs----RIa~aFg~gA~Ti 68 (78)
T PF12242_consen 26 QIEYVKSQGKI-NGPKKVLV--IGASTGYGLAS----RIAAAFGAGADTI 68 (78)
T ss_dssp HHHHHHHC----TS-SEEEE--ES-SSHHHHHH----HHHHHHCC--EEE
T ss_pred HHHHHHhcCCC-CCCceEEE--EecCCcccHHH----HHHHHhcCCCCEE
Confidence 36667777777 45 44455 55667788872 4455778765443
No 116
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=62.25 E-value=24 Score=28.45 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=30.7
Q ss_pred HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+.+.++||++++|-..+|..|..++.++. .+|.+++.+
T Consensus 102 ~~~~~~~g~~vlv~g~~g~~g~~~~~~a~-----~~g~~v~~~ 139 (293)
T cd05195 102 DLARLQKGESVLIHAAAGGVGQAAIQLAQ-----HLGAEVFAT 139 (293)
T ss_pred HHhccCCCCEEEEecCCCHHHHHHHHHHH-----HcCCEEEEE
Confidence 45789999997777677888888888888 999987766
No 117
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=61.78 E-value=20 Score=30.43 Aligned_cols=95 Identities=9% Similarity=0.157 Sum_probs=55.5
Q ss_pred HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceecccccccccccc-ccceeEEEcCc
Q 043034 7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQA-SCHEYCFQVSS 85 (197)
Q Consensus 7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieG-iGIDeiv~VsD 85 (197)
+.+.+++|++++|-..+|..|..++.++. .+|.+++.+-. .+... ..+.. +|+|.++...+
T Consensus 139 ~~~~~~~~~~vlI~g~~g~ig~~~~~~a~-----~~G~~vi~~~~---~~~~~----------~~~~~~~g~~~~~~~~~ 200 (329)
T cd05288 139 EIGKPKPGETVVVSAAAGAVGSVVGQIAK-----LLGARVVGIAG---SDEKC----------RWLVEELGFDAAINYKT 200 (329)
T ss_pred hccCCCCCCEEEEecCcchHHHHHHHHHH-----HcCCEEEEEeC---CHHHH----------HHHHhhcCCceEEecCC
Confidence 45778999987787777888888888888 99998766511 01000 01111 44566666655
Q ss_pred HHHHHHHHHHHH-HhCCeeeehhHHHHHHHHHHhc
Q 043034 86 EEAIETAQQLAH-KEGLLVGISSDAAAAASIKVAK 119 (197)
Q Consensus 86 eEAi~aaR~LAr-~EGI~VG~SSGAaLAAAlklA~ 119 (197)
.+..+...++.. .--+++..+++..+..+++..+
T Consensus 201 ~~~~~~v~~~~~~~~d~vi~~~g~~~~~~~~~~l~ 235 (329)
T cd05288 201 PDLAEALKEAAPDGIDVYFDNVGGEILDAALTLLN 235 (329)
T ss_pred hhHHHHHHHhccCCceEEEEcchHHHHHHHHHhcC
Confidence 544444444431 1225666666665555655543
No 118
>PRK06398 aldose dehydrogenase; Validated
Probab=61.55 E-value=13 Score=31.24 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=23.4
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.|+++|| |.|+.|||.+++-. ++..|++++++
T Consensus 5 ~gk~vlI--tGas~gIG~~ia~~---l~~~G~~Vi~~ 36 (258)
T PRK06398 5 KDKVAIV--TGGSQGIGKAVVNR---LKEEGSNVINF 36 (258)
T ss_pred CCCEEEE--ECCCchHHHHHHHH---HHHCCCeEEEE
Confidence 3555455 77888888887655 55799999887
No 119
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=61.49 E-value=21 Score=30.48 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=28.9
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.+++.+++|++++|-+ +|..|..++-++. .+|.+++.+
T Consensus 148 ~~~~~~~~g~~vlV~g-~g~vg~~~~q~a~-----~~G~~vi~~ 185 (319)
T cd08242 148 LEQVPITPGDKVAVLG-DGKLGLLIAQVLA-----LTGPDVVLV 185 (319)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCeEEEE
Confidence 4678899999977764 6766666666777 999997665
No 120
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=60.25 E-value=22 Score=30.87 Aligned_cols=39 Identities=18% Similarity=0.200 Sum_probs=27.8
Q ss_pred HHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCc-EEEE
Q 043034 5 AEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK-SYHC 49 (197)
Q Consensus 5 ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk-~~~~ 49 (197)
+.+.+.++||++++|++ .|..|..++-+++ .+|.+ ++.+
T Consensus 154 ~~~~~~~~~g~~vlI~g-~g~vG~~a~~lak-----~~G~~~v~~~ 193 (343)
T cd05285 154 ACRRAGVRPGDTVLVFG-AGPIGLLTAAVAK-----AFGATKVVVT 193 (343)
T ss_pred HHHhcCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCcEEEEE
Confidence 34678999999988865 4555665555666 89998 5544
No 121
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=60.17 E-value=23 Score=29.63 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=29.2
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCc-EEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK-SYHC 49 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk-~~~~ 49 (197)
.+...+++|++++|-+ +|..|..++.++. .+|++ ++.+
T Consensus 122 ~~~~~~~~~~~vlI~g-~g~vg~~~~~la~-----~~g~~~v~~~ 160 (312)
T cd08269 122 FRRGWIRAGKTVAVIG-AGFIGLLFLQLAA-----AAGARRVIAI 160 (312)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCcEEEEE
Confidence 3467889999877875 5777777777777 99999 6665
No 122
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=60.09 E-value=24 Score=28.99 Aligned_cols=95 Identities=15% Similarity=0.222 Sum_probs=56.6
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEcCc
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSS 85 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~VsD 85 (197)
.+.+.++||++++|-..+|..|..++.++. .+|.+++.+...- . ....++.+|+|+++...+
T Consensus 113 l~~~~~~~g~~vli~~~~~~~g~~~~~~a~-----~~g~~v~~~~~~~---~----------~~~~~~~~g~~~~~~~~~ 174 (303)
T cd08251 113 FARAGLAKGEHILIQTATGGTGLMAVQLAR-----LKGAEIYATASSD---D----------KLEYLKQLGVPHVINYVE 174 (303)
T ss_pred HHhcCCCCCCEEEEecCCcHHHHHHHHHHH-----HcCCEEEEEcCCH---H----------HHHHHHHcCCCEEEeCCC
Confidence 357889999997775567777777777888 9999877652211 0 011223456677776666
Q ss_pred HHHHHHHHHHHHHhC--CeeeehhHHHHHHHHHHh
Q 043034 86 EEAIETAQQLAHKEG--LLVGISSDAAAAASIKVA 118 (197)
Q Consensus 86 eEAi~aaR~LAr~EG--I~VG~SSGAaLAAAlklA 118 (197)
.+.....+++....| +++...++.....+++..
T Consensus 175 ~~~~~~i~~~~~~~~~d~v~~~~~~~~~~~~~~~l 209 (303)
T cd08251 175 EDFEEEIMRLTGGRGVDVVINTLSGEAIQKGLNCL 209 (303)
T ss_pred ccHHHHHHHHcCCCCceEEEECCcHHHHHHHHHHh
Confidence 555555555544333 344444455544444443
No 123
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=60.07 E-value=23 Score=30.47 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=31.5
Q ss_pred HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.+..+++|++++|-..+|..|..++.++. .+|.+++.+
T Consensus 159 ~~~~~~~~~~vlV~g~~~~vg~~~~~~a~-----~~g~~v~~~ 196 (341)
T cd08297 159 KKAGLKPGDWVVISGAGGGLGHLGVQYAK-----AMGLRVIAI 196 (341)
T ss_pred HhcCCCCCCEEEEECCCchHHHHHHHHHH-----HCCCeEEEE
Confidence 33478999998888888889999888999 999987765
No 124
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=59.76 E-value=21 Score=32.59 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=29.5
Q ss_pred HHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 5 AEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 5 ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
|.+++.+++|++++| .-+|..|..++.++. .+|.+.+++
T Consensus 177 a~~~~~~~~g~~VlV-~G~G~iG~~aiqlAk-----~~Ga~~vi~ 215 (393)
T TIGR02819 177 GAVTAGVGPGSTVYI-AGAGPVGLAAAASAQ-----LLGAAVVIV 215 (393)
T ss_pred HHHhcCCCCCCEEEE-ECCCHHHHHHHHHHH-----HcCCceEEE
Confidence 445678999999888 455777777777777 999987665
No 125
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=59.64 E-value=13 Score=32.23 Aligned_cols=31 Identities=29% Similarity=0.497 Sum_probs=23.0
Q ss_pred CCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 14 GKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 14 G~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
++++|| |.|+.|||.+++-. ++.+|++++++
T Consensus 6 ~k~vlV--TGas~gIG~~~a~~---L~~~G~~V~~~ 36 (322)
T PRK07453 6 KGTVII--TGASSGVGLYAAKA---LAKRGWHVIMA 36 (322)
T ss_pred CCEEEE--EcCCChHHHHHHHH---HHHCCCEEEEE
Confidence 555344 78888999888655 55789999887
No 126
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=59.55 E-value=23 Score=29.10 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=31.1
Q ss_pred HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+.+.+.||++++|-..+|..|..++.++. .+|++++.+
T Consensus 138 ~~~~~~~~~~vlv~g~~g~~g~~~~~~a~-----~~g~~v~~~ 175 (309)
T cd05289 138 ELGGLKAGQTVLIHGAAGGVGSFAVQLAK-----ARGARVIAT 175 (309)
T ss_pred hhcCCCCCCEEEEecCCchHHHHHHHHHH-----HcCCEEEEE
Confidence 34568899997787778888888888888 999997766
No 127
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=58.92 E-value=28 Score=28.08 Aligned_cols=38 Identities=18% Similarity=0.361 Sum_probs=29.4
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.+.+.+++|++++|-..++ .|..++.++. .+|.+++.+
T Consensus 127 ~~~~~~~~~~~vli~g~~~-~G~~~~~~a~-----~~g~~v~~~ 164 (271)
T cd05188 127 RRAGVLKPGDTVLVLGAGG-VGLLAAQLAK-----AAGARVIVT 164 (271)
T ss_pred HhccCCCCCCEEEEECCCH-HHHHHHHHHH-----HcCCeEEEE
Confidence 3456678999877776666 8888888888 999888776
No 128
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=58.80 E-value=29 Score=28.86 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=32.8
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEe
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCP 50 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p 50 (197)
.+.+.+++|++++|-..+|.+|..++.++. .+|.+++.+.
T Consensus 137 ~~~~~~~~~~~vli~g~~~~~g~~~~~~a~-----~~g~~v~~~~ 176 (326)
T cd08272 137 VDRAAVQAGQTVLIHGGAGGVGHVAVQLAK-----AAGARVYATA 176 (326)
T ss_pred HHhcCCCCCCEEEEEcCCCcHHHHHHHHHH-----HcCCEEEEEe
Confidence 467889999998887778888888888888 9999977653
No 129
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=57.85 E-value=30 Score=29.37 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=29.0
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.+.+.+++|++++|++ +|..|..++.++. .+|.+++.+
T Consensus 158 ~~~~~~~~~~~vli~g-~g~vG~~~~~la~-----~~G~~V~~~ 195 (338)
T cd08254 158 VRAGEVKPGETVLVIG-LGGLGLNAVQIAK-----AMGAAVIAV 195 (338)
T ss_pred HhccCCCCCCEEEEEC-CcHHHHHHHHHHH-----HcCCEEEEE
Confidence 3457799999878864 5777777777777 999997665
No 130
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=57.34 E-value=26 Score=30.84 Aligned_cols=39 Identities=13% Similarity=0.020 Sum_probs=28.2
Q ss_pred HHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 5 AEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 5 ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+.+++.++||++++|-.. |..|..++.+++ .+|.+++.+
T Consensus 157 ~~~~~~~~~g~~VlV~G~-g~iG~~a~~~a~-----~~G~~vi~~ 195 (329)
T TIGR02822 157 ALLRASLPPGGRLGLYGF-GGSAHLTAQVAL-----AQGATVHVM 195 (329)
T ss_pred HHHhcCCCCCCEEEEEcC-CHHHHHHHHHHH-----HCCCeEEEE
Confidence 345678999999777664 666666666666 999986654
No 131
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=57.28 E-value=25 Score=30.52 Aligned_cols=36 Identities=14% Similarity=0.070 Sum_probs=27.3
Q ss_pred cCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 8 KGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 8 ~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+-.+++|++++|++ .|..|..++.++. .+|++++.+
T Consensus 164 ~~~~~~g~~vlV~g-~g~vG~~~~~~a~-----~~G~~v~~~ 199 (337)
T cd05283 164 RNGVGPGKRVGVVG-IGGLGHLAVKFAK-----ALGAEVTAF 199 (337)
T ss_pred hcCCCCCCEEEEEC-CcHHHHHHHHHHH-----HcCCeEEEE
Confidence 33488999988876 5777777777777 999987766
No 132
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=56.78 E-value=34 Score=28.51 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=31.1
Q ss_pred HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+-+.+.+|++++|-..+|..|..++.++. .+|.+++.+
T Consensus 137 ~~~~~~~g~~vli~g~~g~~g~~~~~la~-----~~g~~v~~~ 174 (319)
T cd08267 137 DAGKVKPGQRVLINGASGGVGTFAVQIAK-----ALGAHVTGV 174 (319)
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHH-----HcCCEEEEE
Confidence 34568899997777778889999888888 999997765
No 133
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=56.22 E-value=34 Score=28.99 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=28.2
Q ss_pred CCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 9 GLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 9 G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+.+.+|++++|-..+|..|..++.+++ .+|.+++.+
T Consensus 142 ~~~~~~~~vlI~g~~g~vg~~~~~~a~-----~~g~~v~~~ 177 (326)
T cd08289 142 GLTPEQGPVLVTGATGGVGSLAVSILA-----KLGYEVVAS 177 (326)
T ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHH-----HCCCeEEEE
Confidence 344557777787778999999888999 999987655
No 134
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=56.10 E-value=29 Score=29.57 Aligned_cols=94 Identities=10% Similarity=0.142 Sum_probs=53.9
Q ss_pred HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEcCcH
Q 043034 7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSE 86 (197)
Q Consensus 7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~VsDe 86 (197)
+.+.++||++++|-..+|..|..++.++. .+|.+++.+-. .+... ..++.+|+|.++...+.
T Consensus 133 ~~~~~~~~~~vlI~ga~g~ig~~~~~~a~-----~~g~~v~~~~~---~~~~~----------~~~~~~g~~~v~~~~~~ 194 (329)
T cd08250 133 EVGEMKSGETVLVTAAAGGTGQFAVQLAK-----LAGCHVIGTCS---SDEKA----------EFLKSLGCDRPINYKTE 194 (329)
T ss_pred HhcCCCCCCEEEEEeCccHHHHHHHHHHH-----HcCCeEEEEeC---cHHHH----------HHHHHcCCceEEeCCCc
Confidence 45789999998888878888888888888 99998766521 01111 11233445555555444
Q ss_pred HHHHHHHHHHHHhC--CeeeehhHHHHHHHHHHhc
Q 043034 87 EAIETAQQLAHKEG--LLVGISSDAAAAASIKVAK 119 (197)
Q Consensus 87 EAi~aaR~LAr~EG--I~VG~SSGAaLAAAlklA~ 119 (197)
+.....+.+.. +| +++..+++..+..+.+..+
T Consensus 195 ~~~~~~~~~~~-~~vd~v~~~~g~~~~~~~~~~l~ 228 (329)
T cd08250 195 DLGEVLKKEYP-KGVDVVYESVGGEMFDTCVDNLA 228 (329)
T ss_pred cHHHHHHHhcC-CCCeEEEECCcHHHHHHHHHHhc
Confidence 43333333321 22 4555555555555555443
No 135
>PRK08303 short chain dehydrogenase; Provisional
Probab=55.87 E-value=18 Score=31.83 Aligned_cols=31 Identities=23% Similarity=0.378 Sum_probs=23.3
Q ss_pred CCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 14 GKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 14 G~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
|+++|| |.|+.|||+|++-+ ++..|++++++
T Consensus 8 ~k~~lI--TGgs~GIG~aia~~---la~~G~~Vv~~ 38 (305)
T PRK08303 8 GKVALV--AGATRGAGRGIAVE---LGAAGATVYVT 38 (305)
T ss_pred CCEEEE--eCCCchHHHHHHHH---HHHCCCEEEEE
Confidence 555455 77888898888766 55799998886
No 136
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=55.75 E-value=27 Score=30.16 Aligned_cols=38 Identities=16% Similarity=0.235 Sum_probs=29.7
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcC-CcEEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRG-YKSYHC 49 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~G-yk~~~~ 49 (197)
.+...+++|++++|++ +|..|..++.+++ .+| .+++.+
T Consensus 159 ~~~~~~~~g~~vlI~g-~g~~g~~~~~~a~-----~~G~~~v~~~ 197 (345)
T cd08286 159 VLNGKVKPGDTVAIVG-AGPVGLAALLTAQ-----LYSPSKIIMV 197 (345)
T ss_pred HhhcCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCCeEEEE
Confidence 4456788999988875 5888888888888 999 676654
No 137
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=55.66 E-value=32 Score=29.36 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=31.4
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.+.+.+++|++++|-...|..|..++.++. .+|.+++.+
T Consensus 133 ~~~~~~~~g~~vlI~g~~g~ig~~~~~lak-----~~G~~v~~~ 171 (327)
T PRK10754 133 RKTYEIKPDEQFLFHAAAGGVGLIACQWAK-----ALGAKLIGT 171 (327)
T ss_pred HhhcCCCCCCEEEEEeCCcHHHHHHHHHHH-----HcCCEEEEE
Confidence 345789999997777677888888888888 999987655
No 138
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=55.49 E-value=31 Score=28.67 Aligned_cols=38 Identities=11% Similarity=0.025 Sum_probs=29.0
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCc-EEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK-SYHC 49 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk-~~~~ 49 (197)
.+++.++||++++|-+ .|..|.++..++. .+|.+ ++.+
T Consensus 90 ~~~~~~~~g~~vlI~g-~g~vg~~~i~~a~-----~~g~~~vi~~ 128 (277)
T cd08255 90 VRDAEPRLGERVAVVG-LGLVGLLAAQLAK-----AAGAREVVGV 128 (277)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCCcEEEE
Confidence 4468899999977764 5777777777777 99988 6655
No 139
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=55.02 E-value=38 Score=28.62 Aligned_cols=94 Identities=16% Similarity=0.230 Sum_probs=56.3
Q ss_pred HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEcCcH
Q 043034 7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSE 86 (197)
Q Consensus 7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~VsDe 86 (197)
+.+.+++|++++|-..+|.+|..++.+++ .+|.+++.+-. .+.. ...+..+|+|.++...+.
T Consensus 134 ~~~~~~~~~~vlI~ga~g~~g~~~~~~a~-----~~g~~v~~~~~---~~~~----------~~~~~~~g~~~~~~~~~~ 195 (334)
T PTZ00354 134 KHGDVKKGQSVLIHAGASGVGTAAAQLAE-----KYGAATIITTS---SEEK----------VDFCKKLAAIILIRYPDE 195 (334)
T ss_pred HhcCCCCCCEEEEEcCCchHHHHHHHHHH-----HcCCEEEEEeC---CHHH----------HHHHHHcCCcEEEecCCh
Confidence 34788999998887778999999999999 99998765411 0111 111233555666655443
Q ss_pred H-HHHHHHHHHHHhC--CeeeehhHHHHHHHHHHh
Q 043034 87 E-AIETAQQLAHKEG--LLVGISSDAAAAASIKVA 118 (197)
Q Consensus 87 E-Ai~aaR~LAr~EG--I~VG~SSGAaLAAAlklA 118 (197)
+ ..+..+++...+| +++..+++..+..+++..
T Consensus 196 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~l 230 (334)
T PTZ00354 196 EGFAPKVKKLTGEKGVNLVLDCVGGSYLSETAEVL 230 (334)
T ss_pred hHHHHHHHHHhCCCCceEEEECCchHHHHHHHHHh
Confidence 3 4455555553333 456655555555555544
No 140
>PRK07791 short chain dehydrogenase; Provisional
Probab=54.67 E-value=21 Score=30.67 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=23.1
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.|+++|| |.|+.|||.+++-. ++..|++++++
T Consensus 5 ~~k~~lI--TGas~GIG~aia~~---la~~G~~vii~ 36 (286)
T PRK07791 5 DGRVVIV--TGAGGGIGRAHALA---FAAEGARVVVN 36 (286)
T ss_pred CCCEEEE--ECCCchHHHHHHHH---HHHCCCEEEEe
Confidence 4666455 77777888877655 44789999887
No 141
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=54.20 E-value=31 Score=29.27 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=31.2
Q ss_pred HcCCCCCCC-EEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 7 DKGLITPGK-SILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 7 ~~G~i~pG~-t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
++..++||+ +++|-..+|..|..++.++. .+|.+++.+
T Consensus 138 ~~~~~~~~~~~vlI~g~~g~vg~~~~~la~-----~~G~~vi~~ 176 (323)
T TIGR02823 138 ERNGLTPEDGPVLVTGATGGVGSLAVAILS-----KLGYEVVAS 176 (323)
T ss_pred hhcCCCCCCceEEEEcCCcHHHHHHHHHHH-----HcCCeEEEE
Confidence 445588998 88888888999999988888 999987655
No 142
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=54.15 E-value=23 Score=33.77 Aligned_cols=45 Identities=24% Similarity=0.329 Sum_probs=31.8
Q ss_pred CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHH-HHhhhHHhhcCCcEEEE
Q 043034 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAF-ISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~-iaa~~~~~~~Gyk~~~~ 49 (197)
+|+....+|.+..|.- .+=.|.+++|||+|+ ++. .+ ..|.+++++
T Consensus 27 qi~~~~~~~~~~~ggK-~aLVTGaSsGIGlA~~IA~--al-~~GA~Vi~v 72 (398)
T PRK13656 27 QIEYVKAQGPIANGPK-KVLVIGASSGYGLASRIAA--AF-GAGADTLGV 72 (398)
T ss_pred HHHHHHhcCCcCCCCC-EEEEECCCchHhHHHHHHH--HH-HcCCeEEEE
Confidence 3677788899966644 344588888999997 444 22 568887766
No 143
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=53.83 E-value=20 Score=30.25 Aligned_cols=34 Identities=29% Similarity=0.266 Sum_probs=23.8
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.|+++||=..||+.|||.|+.-+ .+..|++++++
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~---l~~~G~~v~~~ 38 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKA---CKREGAELAFT 38 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHH---HHHCCCeEEEE
Confidence 45665665544577888887644 45899999886
No 144
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=53.47 E-value=24 Score=30.69 Aligned_cols=92 Identities=17% Similarity=0.208 Sum_probs=52.2
Q ss_pred CCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEcCcHHH
Q 043034 9 GLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSEEA 88 (197)
Q Consensus 9 G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~VsDeEA 88 (197)
+.++||++++|-..+|..|.+++.++. .+|.+++.+. .++.. ..++.+|++.++...+.+.
T Consensus 150 ~~~~~~~~vlI~ga~g~vg~~~~~~a~-----~~G~~v~~~~----~~~~~----------~~~~~~g~~~v~~~~~~~~ 210 (339)
T cd08249 150 SPASKGKPVLIWGGSSSVGTLAIQLAK-----LAGYKVITTA----SPKNF----------DLVKSLGADAVFDYHDPDV 210 (339)
T ss_pred CCCCCCCEEEEEcChhHHHHHHHHHHH-----HcCCeEEEEE----CcccH----------HHHHhcCCCEEEECCCchH
Confidence 455899998888888888888888888 9999876642 12111 1123455566665544444
Q ss_pred HHHHHHHHH-HhCCeeeehhH-HHHHHHHHHhc
Q 043034 89 IETAQQLAH-KEGLLVGISSD-AAAAASIKVAK 119 (197)
Q Consensus 89 i~aaR~LAr-~EGI~VG~SSG-AaLAAAlklA~ 119 (197)
.+..+++.. .--+++..+++ .++..+++.++
T Consensus 211 ~~~l~~~~~~~~d~vl~~~g~~~~~~~~~~~l~ 243 (339)
T cd08249 211 VEDIRAATGGKLRYALDCISTPESAQLCAEALG 243 (339)
T ss_pred HHHHHHhcCCCeeEEEEeeccchHHHHHHHHHh
Confidence 344333322 01234554444 45545555443
No 145
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=53.10 E-value=41 Score=27.75 Aligned_cols=93 Identities=12% Similarity=0.227 Sum_probs=52.4
Q ss_pred HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEcCcH
Q 043034 7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSE 86 (197)
Q Consensus 7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~VsDe 86 (197)
+.+.+.+|++++|-..+|..|..++.+++ .+|.+++.+.... ... ..+..+|+|.++...+.
T Consensus 138 ~~~~~~~g~~vlI~g~~~~~g~~~~~~a~-----~~g~~v~~~~~~~---~~~----------~~~~~~g~~~~~~~~~~ 199 (325)
T cd08253 138 HRAGAKAGETVLVHGGSGAVGHAAVQLAR-----WAGARVIATASSA---EGA----------ELVRQAGADAVFNYRAE 199 (325)
T ss_pred HHhCCCCCCEEEEEcCCchHHHHHHHHHH-----HcCCEEEEEeCCH---HHH----------HHHHHcCCCEEEeCCCc
Confidence 45788999987776666777777777777 8999877652211 000 11122345666666665
Q ss_pred HHHHHHHHHHHHhCC--eeeehhHHHHHHHHHH
Q 043034 87 EAIETAQQLAHKEGL--LVGISSDAAAAASIKV 117 (197)
Q Consensus 87 EAi~aaR~LAr~EGI--~VG~SSGAaLAAAlkl 117 (197)
+.....+.+...+++ ++..+++..+..+.+.
T Consensus 200 ~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~ 232 (325)
T cd08253 200 DLADRILAATAGQGVDVIIEVLANVNLAKDLDV 232 (325)
T ss_pred CHHHHHHHHcCCCceEEEEECCchHHHHHHHHh
Confidence 555555555443333 4444444444444443
No 146
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=52.92 E-value=21 Score=30.09 Aligned_cols=34 Identities=18% Similarity=0.158 Sum_probs=23.3
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.|+++||=..|||.|||.|+.=. .+..|++++++
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~---la~~G~~v~~~ 38 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQ---LHAAGAELGIT 38 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHH---HHHCCCEEEEE
Confidence 35665665555567888877644 45899998876
No 147
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=52.83 E-value=35 Score=28.74 Aligned_cols=37 Identities=14% Similarity=0.254 Sum_probs=29.7
Q ss_pred cCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 8 KGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 8 ~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.+.+.+|++++|-..+|..|..++.+++ .+|.+++.+
T Consensus 157 ~~~~~~~~~vlI~ga~g~vG~~~~~~a~-----~~g~~v~~~ 193 (332)
T cd08259 157 RAGVKKGDTVLVTGAGGGVGIHAIQLAK-----ALGARVIAV 193 (332)
T ss_pred HhCCCCCCEEEEECCCCHHHHHHHHHHH-----HcCCeEEEE
Confidence 3778999987887777878877777777 999997665
No 148
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=52.81 E-value=29 Score=30.95 Aligned_cols=36 Identities=22% Similarity=0.215 Sum_probs=26.9
Q ss_pred cCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 8 KGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 8 ~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.+.++||++++|. -+|..|..+..+++ .+|.+++.+
T Consensus 178 ~~~~~~g~~VlV~-G~G~vG~~avq~Ak-----~~Ga~vi~~ 213 (360)
T PLN02586 178 YGMTEPGKHLGVA-GLGGLGHVAVKIGK-----AFGLKVTVI 213 (360)
T ss_pred hcccCCCCEEEEE-CCCHHHHHHHHHHH-----HCCCEEEEE
Confidence 4667899997784 45777777777777 999987665
No 149
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=52.58 E-value=13 Score=34.37 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.4
Q ss_pred CCCCCCEEEEeeCCChHHHHHHHHHh
Q 043034 10 LITPGKSILIEITSSNTGIGLAFISA 35 (197)
Q Consensus 10 ~i~pG~t~Iie~tsgntgi~lA~iaa 35 (197)
+++||.+ |+|+-+|+-+.+.|+.=+
T Consensus 102 ~i~PGsv-V~EsGTGSGSlShaiara 126 (314)
T KOG2915|consen 102 EIRPGSV-VLESGTGSGSLSHAIARA 126 (314)
T ss_pred cCCCCCE-EEecCCCcchHHHHHHHh
Confidence 5899997 999999999999998766
No 150
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=52.51 E-value=34 Score=29.53 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=28.0
Q ss_pred HHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCc-EEEE
Q 043034 5 AEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK-SYHC 49 (197)
Q Consensus 5 ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk-~~~~ 49 (197)
+.++..++||++++|=+ .|..|..++.+++ .+|.+ ++.+
T Consensus 155 ~l~~~~~~~g~~vlV~G-~G~vG~~~~~~ak-----~~G~~~vi~~ 194 (339)
T cd08239 155 ALRRVGVSGRDTVLVVG-AGPVGLGALMLAR-----ALGAEDVIGV 194 (339)
T ss_pred HHHhcCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCCEEEEE
Confidence 34556789999977754 4766766667777 99999 6654
No 151
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=52.32 E-value=34 Score=28.12 Aligned_cols=38 Identities=16% Similarity=0.290 Sum_probs=30.5
Q ss_pred HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+.+.+++|++++|-..+|..|..++.++. .+|.+++.+
T Consensus 130 ~~~~~~~g~~vlI~g~~g~~g~~~~~~a~-----~~g~~v~~~ 167 (320)
T cd05286 130 ETYPVKPGDTVLVHAAAGGVGLLLTQWAK-----ALGATVIGT 167 (320)
T ss_pred HhcCCCCCCEEEEEcCCchHHHHHHHHHH-----HcCCEEEEE
Confidence 45788999987887767888888888888 999987665
No 152
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=52.31 E-value=44 Score=27.57 Aligned_cols=38 Identities=13% Similarity=0.339 Sum_probs=30.2
Q ss_pred HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+.+.+++|++++|-..+|..|..++.++. .+|.+++.+
T Consensus 133 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~-----~~g~~v~~~ 170 (323)
T cd08241 133 RRARLQPGETVLVLGAAGGVGLAAVQLAK-----ALGARVIAA 170 (323)
T ss_pred HhcCCCCCCEEEEEcCCchHHHHHHHHHH-----HhCCEEEEE
Confidence 46778899987776667888888888888 999987665
No 153
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=52.05 E-value=37 Score=29.54 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=29.0
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.+...+++|++++|.+ +|..|..++.+++ .+|.+.+++
T Consensus 167 ~~~~~~~~g~~vlI~g-~g~vG~~~~~~a~-----~~G~~~v~~ 204 (350)
T cd08256 167 VDRANIKFDDVVVLAG-AGPLGLGMIGAAR-----LKNPKKLIV 204 (350)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCcEEEE
Confidence 3567899999988844 5778877777888 999876554
No 154
>PRK09620 hypothetical protein; Provisional
Probab=51.90 E-value=13 Score=32.13 Aligned_cols=24 Identities=13% Similarity=0.005 Sum_probs=22.0
Q ss_pred eCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 21 ITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 21 ~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.|||-+|..||-... .+|++++++
T Consensus 26 ~SSGfiGs~LA~~L~-----~~Ga~V~li 49 (229)
T PRK09620 26 MAKGTIGRIIAEELI-----SKGAHVIYL 49 (229)
T ss_pred CCcCHHHHHHHHHHH-----HCCCeEEEE
Confidence 389999999999999 999999977
No 155
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=51.85 E-value=40 Score=29.94 Aligned_cols=38 Identities=11% Similarity=0.155 Sum_probs=28.8
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCC-cEEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGY-KSYHC 49 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gy-k~~~~ 49 (197)
.+.+.+++|++++|-+ +|..|...+.+++ .+|. +++.+
T Consensus 179 ~~~~~~~~g~~VlV~G-~G~vG~~a~~~ak-----~~G~~~vi~~ 217 (368)
T cd08300 179 LNTAKVEPGSTVAVFG-LGAVGLAVIQGAK-----AAGASRIIGI 217 (368)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCCeEEEE
Confidence 3567899999977765 5777777777788 9999 46654
No 156
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=51.49 E-value=34 Score=29.47 Aligned_cols=38 Identities=24% Similarity=0.382 Sum_probs=28.7
Q ss_pred HcCCCCCC--CEEEEeeCCChHHHHHHHHHhhhHHhhcCC-cEEEE
Q 043034 7 DKGLITPG--KSILIEITSSNTGIGLAFISAVRIAAVRGY-KSYHC 49 (197)
Q Consensus 7 ~~G~i~pG--~t~Iie~tsgntgi~lA~iaa~~~~~~~Gy-k~~~~ 49 (197)
+.+.++|| ++++|-.-+|..|..+..+++ .+|. +++.+
T Consensus 146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk-----~~G~~~Vi~~ 186 (345)
T cd08293 146 EKGHITPGANQTMVVSGAAGACGSLAGQIGR-----LLGCSRVVGI 186 (345)
T ss_pred HhccCCCCCCCEEEEECCCcHHHHHHHHHHH-----HcCCCEEEEE
Confidence 56778887 887787667777777777777 9998 56655
No 157
>PRK06196 oxidoreductase; Provisional
Probab=51.45 E-value=23 Score=30.76 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=23.4
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.|++++| |.|+.|||.+++-. ++.+|++++++
T Consensus 25 ~~k~vlI--TGasggIG~~~a~~---L~~~G~~Vv~~ 56 (315)
T PRK06196 25 SGKTAIV--TGGYSGLGLETTRA---LAQAGAHVIVP 56 (315)
T ss_pred CCCEEEE--eCCCchHHHHHHHH---HHHCCCEEEEE
Confidence 3555444 77888888887655 55789999887
No 158
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=51.29 E-value=31 Score=29.52 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=30.7
Q ss_pred CCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 10 LITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 10 ~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.+++|++++|-..+|..|..++.++. .+|.+++.+
T Consensus 159 ~~~~~~~vlI~g~~g~~g~~~~~la~-----~~g~~vi~~ 193 (334)
T PRK13771 159 GVKKGETVLVTGAGGGVGIHAIQVAK-----ALGAKVIAV 193 (334)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHH-----HcCCEEEEE
Confidence 67899998998888999999999999 999997655
No 159
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=51.20 E-value=37 Score=29.41 Aligned_cols=37 Identities=14% Similarity=0.154 Sum_probs=29.2
Q ss_pred HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+...+++|++++|-. +|..|..++.++. .+|.+++.+
T Consensus 157 ~~~~~~~~~~vlV~g-~g~iG~~~~~~a~-----~~G~~vi~~ 193 (333)
T cd08296 157 RNSGAKPGDLVAVQG-IGGLGHLAVQYAA-----KMGFRTVAI 193 (333)
T ss_pred HhcCCCCCCEEEEEC-CcHHHHHHHHHHH-----HCCCeEEEE
Confidence 344688999877777 7888888888888 999997665
No 160
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=50.79 E-value=18 Score=30.88 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=24.9
Q ss_pred cCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 8 KGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 8 ~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.|+++ |+++||-..|+|.|||+|+.-. ++..|++++++
T Consensus 5 ~~~~~-~k~~lItGas~~~GIG~aia~~---la~~G~~V~l~ 42 (272)
T PRK08159 5 SGLMA-GKRGLILGVANNRSIAWGIAKA---CRAAGAELAFT 42 (272)
T ss_pred ccccc-CCEEEEECCCCCCcHHHHHHHH---HHHCCCEEEEE
Confidence 45564 4555775555456777776544 45899999876
No 161
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=50.72 E-value=23 Score=30.19 Aligned_cols=37 Identities=24% Similarity=0.287 Sum_probs=23.5
Q ss_pred CCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 9 GLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 9 G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
|.+ .|+++||=..|++.|||.|+.-+ ++..|++++++
T Consensus 3 ~~l-~~k~~lVTGas~~~GIG~aiA~~---la~~Ga~V~~~ 39 (271)
T PRK06505 3 GLM-QGKRGLIMGVANDHSIAWGIAKQ---LAAQGAELAFT 39 (271)
T ss_pred ccc-CCCEEEEeCCCCCCcHHHHHHHH---HHhCCCEEEEe
Confidence 344 35555664444434777776644 45899999887
No 162
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=50.24 E-value=42 Score=28.90 Aligned_cols=37 Identities=19% Similarity=0.390 Sum_probs=29.1
Q ss_pred HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+...+++|++++|-+ +|..|..++.++. .+|++++.+
T Consensus 153 ~~~~l~~g~~vLI~g-~g~vG~~a~~lA~-----~~g~~v~~~ 189 (337)
T cd08261 153 RRAGVTAGDTVLVVG-AGPIGLGVIQVAK-----ARGARVIVV 189 (337)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCeEEEE
Confidence 457789999877764 6777878777888 999998766
No 163
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=50.09 E-value=44 Score=27.20 Aligned_cols=35 Identities=34% Similarity=0.484 Sum_probs=26.0
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+...++|=+.+||.| |=++++| |.++.+||+++++
T Consensus 24 ~~~~v~il~G~GnNG-gDgl~~A-R~L~~~G~~V~v~ 58 (169)
T PF03853_consen 24 KGPRVLILCGPGNNG-GDGLVAA-RHLANRGYNVTVY 58 (169)
T ss_dssp TT-EEEEEE-SSHHH-HHHHHHH-HHHHHTTCEEEEE
T ss_pred CCCeEEEEECCCCCh-HHHHHHH-HHHHHCCCeEEEE
Confidence 444568889999987 5566677 7888999999985
No 164
>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=50.05 E-value=27 Score=28.59 Aligned_cols=31 Identities=35% Similarity=0.478 Sum_probs=22.2
Q ss_pred CCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 14 GKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 14 G~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+++++| |.|+.|||++.+-+ .+..|++++++
T Consensus 5 ~~~ilI--TGas~GiG~aia~~---l~~~G~~v~~~ 35 (251)
T COG1028 5 GKVALV--TGASSGIGRAIARA---LAREGARVVVA 35 (251)
T ss_pred CCEEEE--eCCCCHHHHHHHHH---HHHCCCeEEEE
Confidence 444344 77777888888766 44899998776
No 165
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=49.62 E-value=46 Score=29.43 Aligned_cols=39 Identities=18% Similarity=0.177 Sum_probs=27.9
Q ss_pred HHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCC-cEEEE
Q 043034 5 AEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGY-KSYHC 49 (197)
Q Consensus 5 ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gy-k~~~~ 49 (197)
+.+...++||++++|=+ +|..|...+.+++ .+|. +++.+
T Consensus 179 ~~~~~~~~~g~~VlV~G-~g~vG~~a~q~ak-----~~G~~~vi~~ 218 (369)
T cd08301 179 AWNVAKVKKGSTVAIFG-LGAVGLAVAEGAR-----IRGASRIIGV 218 (369)
T ss_pred HHhhcCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCCeEEEE
Confidence 34567899999977764 5766766666777 9998 56554
No 166
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=49.61 E-value=42 Score=27.09 Aligned_cols=38 Identities=21% Similarity=0.377 Sum_probs=29.2
Q ss_pred HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+.+.++||++++|-..+|..|..++.+++ .+|.+++.+
T Consensus 98 ~~~~~~~g~~vlv~g~~~~~g~~~~~~a~-----~~g~~v~~~ 135 (288)
T smart00829 98 DLARLRPGESVLIHAAAGGVGQAAIQLAQ-----HLGAEVFAT 135 (288)
T ss_pred HHhCCCCCCEEEEecCCcHHHHHHHHHHH-----HcCCEEEEE
Confidence 56788999987776556777777777777 899987665
No 167
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=49.31 E-value=39 Score=30.06 Aligned_cols=38 Identities=18% Similarity=0.348 Sum_probs=29.0
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCC-cEEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGY-KSYHC 49 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gy-k~~~~ 49 (197)
.+...++||++++|++ .|..|..++.++. .+|. +++.+
T Consensus 169 ~~~~~~~~g~~vlI~g-~g~vg~~~~~~a~-----~~G~~~vi~~ 207 (375)
T cd08282 169 LELAGVQPGDTVAVFG-AGPVGLMAAYSAI-----LRGASRVYVV 207 (375)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCCEEEEE
Confidence 3566788999988864 5888888888888 9998 46554
No 168
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=48.80 E-value=27 Score=29.41 Aligned_cols=37 Identities=30% Similarity=0.365 Sum_probs=24.1
Q ss_pred CCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 9 GLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 9 G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
|.++ |+++||=..|++.|||.|..-+ ++..|++++++
T Consensus 4 ~~~~-~k~~lITGas~~~GIG~a~a~~---la~~G~~v~~~ 40 (260)
T PRK06603 4 GLLQ-GKKGLITGIANNMSISWAIAQL---AKKHGAELWFT 40 (260)
T ss_pred cccC-CcEEEEECCCCCcchHHHHHHH---HHHcCCEEEEE
Confidence 4453 4555665555555888877533 44789999886
No 169
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=48.29 E-value=41 Score=28.29 Aligned_cols=39 Identities=18% Similarity=0.318 Sum_probs=30.7
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.+.+.++||++++|-..+|..|..++.++. .+|.+++.+
T Consensus 131 ~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~-----~~g~~v~~~ 169 (323)
T cd05282 131 TEYLKLPPGDWVIQNAANSAVGRMLIQLAK-----LLGFKTINV 169 (323)
T ss_pred HHhccCCCCCEEEEcccccHHHHHHHHHHH-----HCCCeEEEE
Confidence 345678999987777677888888888888 999987665
No 170
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=47.42 E-value=60 Score=27.12 Aligned_cols=39 Identities=21% Similarity=0.173 Sum_probs=30.7
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.+.+.+++|++++|-..+|..|..++.++. .+|.+++.+
T Consensus 134 ~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~-----~~g~~v~~~ 172 (325)
T cd08271 134 FKKLRIEAGRTILITGGAGGVGSFAVQLAK-----RAGLRVITT 172 (325)
T ss_pred HHhcCCCCCCEEEEECCccHHHHHHHHHHH-----HcCCEEEEE
Confidence 355788999987887777777777777888 999987655
No 171
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=47.30 E-value=42 Score=28.79 Aligned_cols=93 Identities=13% Similarity=0.158 Sum_probs=49.3
Q ss_pred HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCC-cEEEEecccccCCCcceeccccccccccccccceeEEEcCc
Q 043034 7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGY-KSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSS 85 (197)
Q Consensus 7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gy-k~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~VsD 85 (197)
+.+.++||++++|.+ +|..|..+..++. .+|. +++.+... + +. ...++.+|.|.++...+
T Consensus 161 ~~~~~~~~~~VlI~g-~g~vg~~~iqlak-----~~g~~~v~~~~~~---~-~~---------~~~~~~~g~~~vi~~~~ 221 (347)
T cd05278 161 ELAGIKPGSTVAVIG-AGPVGLCAVAGAR-----LLGAARIIAVDSN---P-ER---------LDLAKEAGATDIINPKN 221 (347)
T ss_pred hhcCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCCEEEEEeCC---H-HH---------HHHHHHhCCcEEEcCCc
Confidence 456789999977754 5666777666777 8997 55554110 1 00 01123344566666655
Q ss_pred HHHHHHHHHHHHHhCC--eeeehhH-HHHHHHHHHh
Q 043034 86 EEAIETAQQLAHKEGL--LVGISSD-AAAAASIKVA 118 (197)
Q Consensus 86 eEAi~aaR~LAr~EGI--~VG~SSG-AaLAAAlklA 118 (197)
++..+..+++....++ ++...++ ..+..+++.+
T Consensus 222 ~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l 257 (347)
T cd05278 222 GDIVEQILELTGGRGVDCVIEAVGFEETFEQAVKVV 257 (347)
T ss_pred chHHHHHHHHcCCCCCcEEEEccCCHHHHHHHHHHh
Confidence 5554555544432332 3333333 3444455544
No 172
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=47.17 E-value=29 Score=29.19 Aligned_cols=34 Identities=26% Similarity=0.256 Sum_probs=23.0
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+|+++||-.-|++.|||.|+.=+ ++..|++++++
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~---l~~~G~~v~~~ 38 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKA---CREQGAELAFT 38 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHH---HHHCCCEEEEE
Confidence 35565665443467888876544 55899999886
No 173
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=47.12 E-value=9.5 Score=24.39 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=21.5
Q ss_pred CCCcccccc-ccceeeeccCCccccC
Q 043034 151 PCPFCSLHE-ACHQFLLPSGGERYLS 175 (197)
Q Consensus 151 ~~~~~~~~~-~~~~~i~~d~g~rYls 175 (197)
-||+|.-.+ .--.|--+++-.||+-
T Consensus 7 ~CP~C~s~~~v~k~G~~~~G~qryrC 32 (36)
T PF03811_consen 7 HCPRCQSTEGVKKNGKSPSGHQRYRC 32 (36)
T ss_pred eCCCCCCCCcceeCCCCCCCCEeEec
Confidence 499999998 8888888888899874
No 174
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=46.89 E-value=28 Score=29.89 Aligned_cols=34 Identities=24% Similarity=0.187 Sum_probs=21.6
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.|+++||=..|+|.|||.|+.=+ ++..|++++++
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~---la~~G~~Vil~ 37 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKA---CFEQGAELAFT 37 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHH---HHHCCCEEEEE
Confidence 35564553333347888776543 44899999886
No 175
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=46.82 E-value=55 Score=28.60 Aligned_cols=37 Identities=11% Similarity=0.222 Sum_probs=27.5
Q ss_pred HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCC-cEEEE
Q 043034 7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGY-KSYHC 49 (197)
Q Consensus 7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gy-k~~~~ 49 (197)
+-+.++||++++|-+ +|..|..++.++. .+|. +++.+
T Consensus 171 ~~~~~~~g~~vlI~g-~g~vG~~~~~lak-----~~G~~~v~~~ 208 (361)
T cd08231 171 RAGPVGAGDTVVVQG-AGPLGLYAVAAAK-----LAGARRVIVI 208 (361)
T ss_pred hccCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCCeEEEE
Confidence 345667999878875 6877777777777 9999 66655
No 176
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=46.76 E-value=22 Score=29.22 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=21.1
Q ss_pred CCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 22 TSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 22 tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
-+|..|.++|+..+ ..||+++++
T Consensus 6 GaG~mG~~iA~~~a-----~~G~~V~l~ 28 (180)
T PF02737_consen 6 GAGTMGRGIAALFA-----RAGYEVTLY 28 (180)
T ss_dssp S-SHHHHHHHHHHH-----HTTSEEEEE
T ss_pred cCCHHHHHHHHHHH-----hCCCcEEEE
Confidence 56999999999999 999999998
No 177
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=46.49 E-value=50 Score=27.82 Aligned_cols=37 Identities=14% Similarity=0.297 Sum_probs=28.8
Q ss_pred HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+.+.++||++++|- .+|.+|..++.++. .+|.+++.+
T Consensus 154 ~~~~~~~g~~vli~-g~g~~g~~~~~~a~-----~~G~~v~~~ 190 (336)
T cd08276 154 GLGPLKPGDTVLVQ-GTGGVSLFALQFAK-----AAGARVIAT 190 (336)
T ss_pred hhcCCCCCCEEEEE-CCcHHHHHHHHHHH-----HcCCEEEEE
Confidence 34678999987776 46777887777888 999997665
No 178
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=46.09 E-value=49 Score=29.29 Aligned_cols=38 Identities=11% Similarity=0.187 Sum_probs=28.5
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCC-cEEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGY-KSYHC 49 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gy-k~~~~ 49 (197)
.+.+.++||++++|-+ +|..|..++.+++ .+|. +++.+
T Consensus 177 ~~~~~~~~g~~vlV~G-~g~vG~~~~~~a~-----~~G~~~Vi~~ 215 (365)
T cd08277 177 WNTAKVEPGSTVAVFG-LGAVGLSAIMGAK-----IAGASRIIGV 215 (365)
T ss_pred HhhcCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCCeEEEE
Confidence 4568899999976664 6877777777777 9999 46655
No 179
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=46.03 E-value=63 Score=26.76 Aligned_cols=39 Identities=26% Similarity=0.356 Sum_probs=28.6
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.+.+.+.++++++|-..+|..|..++.++. .+|.+++.+
T Consensus 137 ~~~~~~~~~~~vli~g~~~~~g~~~~~~~~-----~~g~~v~~~ 175 (328)
T cd08268 137 VELAGLRPGDSVLITAASSSVGLAAIQIAN-----AAGATVIAT 175 (328)
T ss_pred HHhcCCCCCCEEEEecCccHHHHHHHHHHH-----HcCCEEEEE
Confidence 346788899886665556666666666777 999997766
No 180
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=46.01 E-value=53 Score=26.97 Aligned_cols=95 Identities=13% Similarity=0.192 Sum_probs=52.4
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEcCc
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSS 85 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~VsD 85 (197)
++...+.+|++++|-..+|..|..++.+++ .+|.+++.+...- ... ..++.+|.+.++...+
T Consensus 132 ~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~-----~~g~~v~~~~~~~---~~~----------~~~~~~g~~~~~~~~~ 193 (323)
T cd05276 132 FQLGGLKAGETVLIHGGASGVGTAAIQLAK-----ALGARVIATAGSE---EKL----------EACRALGADVAINYRT 193 (323)
T ss_pred HHhcCCCCCCEEEEEcCcChHHHHHHHHHH-----HcCCEEEEEcCCH---HHH----------HHHHHcCCCEEEeCCc
Confidence 344678899987776666666666666777 9999976652210 000 1122334555666655
Q ss_pred HHHHHHHHHHHHHhC--CeeeehhHHHHHHHHHHh
Q 043034 86 EEAIETAQQLAHKEG--LLVGISSDAAAAASIKVA 118 (197)
Q Consensus 86 eEAi~aaR~LAr~EG--I~VG~SSGAaLAAAlklA 118 (197)
.+..+..+++....+ +++...++..+..+++..
T Consensus 194 ~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~ 228 (323)
T cd05276 194 EDFAEEVKEATGGRGVDVILDMVGGDYLARNLRAL 228 (323)
T ss_pred hhHHHHHHHHhCCCCeEEEEECCchHHHHHHHHhh
Confidence 555555555543223 455555554444444433
No 181
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=45.79 E-value=51 Score=28.70 Aligned_cols=38 Identities=13% Similarity=0.071 Sum_probs=28.5
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCc-EEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK-SYHC 49 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk-~~~~ 49 (197)
.++..+++|++++|-+ +|..|..++.+++ .+|.+ ++.+
T Consensus 159 ~~~~~~~~g~~vlI~g-~g~iG~~~~~lak-----~~G~~~v~~~ 197 (351)
T cd08285 159 AELANIKLGDTVAVFG-IGPVGLMAVAGAR-----LRGAGRIIAV 197 (351)
T ss_pred HHccCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCCeEEEE
Confidence 4567899999977764 5777777777888 99996 4443
No 182
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=45.48 E-value=65 Score=26.95 Aligned_cols=95 Identities=17% Similarity=0.232 Sum_probs=50.1
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEcCc
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSS 85 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~VsD 85 (197)
.+...+++|++++|-..++..|..++.++. .+|++++.+..... ... .++.+|.+.++...+
T Consensus 159 ~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~-----~~g~~v~~~~~~~~---~~~----------~~~~~~~~~~~~~~~ 220 (342)
T cd08266 159 VTRARLRPGETVLVHGAGSGVGSAAIQIAK-----LFGATVIATAGSED---KLE----------RAKELGADYVIDYRK 220 (342)
T ss_pred HHhcCCCCCCEEEEECCCchHHHHHHHHHH-----HcCCEEEEEeCCHH---HHH----------HHHHcCCCeEEecCC
Confidence 345778899886776665556666666666 99999776532211 110 112233445555555
Q ss_pred HHHHHHHHHHHHHhC--CeeeehhHHHHHHHHHHh
Q 043034 86 EEAIETAQQLAHKEG--LLVGISSDAAAAASIKVA 118 (197)
Q Consensus 86 eEAi~aaR~LAr~EG--I~VG~SSGAaLAAAlklA 118 (197)
.+..+..+++....+ +++..+++..+..+++..
T Consensus 221 ~~~~~~~~~~~~~~~~d~~i~~~g~~~~~~~~~~l 255 (342)
T cd08266 221 EDFVREVRELTGKRGVDVVVEHVGAATWEKSLKSL 255 (342)
T ss_pred hHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHh
Confidence 555555554443222 345544444444444444
No 183
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=45.47 E-value=41 Score=28.87 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=29.9
Q ss_pred HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
..+.+++|++++|-..+|..|..++.++. .+|.+++.+
T Consensus 140 ~~~~~~~g~~vlI~g~~g~vg~~~~~~a~-----~~g~~v~~~ 177 (341)
T cd08290 140 DFVKLQPGDWVIQNGANSAVGQAVIQLAK-----LLGIKTINV 177 (341)
T ss_pred hhcccCCCCEEEEccchhHHHHHHHHHHH-----HcCCeEEEE
Confidence 34678999997776667888888888888 999997765
No 184
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=45.37 E-value=53 Score=27.93 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=27.3
Q ss_pred HHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCc-EEEE
Q 043034 5 AEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK-SYHC 49 (197)
Q Consensus 5 ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk-~~~~ 49 (197)
|.++...+||++++|-+ .|..|...+.+++ .+|.+ ++.+
T Consensus 112 al~~~~~~~g~~VlV~G-~G~vG~~~~~~ak-----~~G~~~Vi~~ 151 (280)
T TIGR03366 112 ALEAAGDLKGRRVLVVG-AGMLGLTAAAAAA-----AAGAARVVAA 151 (280)
T ss_pred HHHhccCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCCEEEEE
Confidence 44555567999866654 5777777777777 99997 5544
No 185
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=45.36 E-value=52 Score=28.64 Aligned_cols=38 Identities=16% Similarity=0.152 Sum_probs=28.5
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCC-cEEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGY-KSYHC 49 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gy-k~~~~ 49 (197)
.+...++||++++|-+ +|..|..++.++. .+|+ +++.+
T Consensus 165 l~~~~~~~g~~vlI~g-~g~vG~~a~q~a~-----~~G~~~v~~~ 203 (351)
T cd08233 165 VRRSGFKPGDTALVLG-AGPIGLLTILALK-----AAGASKIIVS 203 (351)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCCEEEEE
Confidence 4567789999877765 5777777777777 9999 55554
No 186
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=44.75 E-value=26 Score=31.80 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=24.3
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+|.+ +=.|.+|.|||++.+= -+|.+|.++++.
T Consensus 34 ~~~~--~vVTGansGIG~eta~---~La~~Ga~Vv~~ 65 (314)
T KOG1208|consen 34 SGKV--ALVTGATSGIGFETAR---ELALRGAHVVLA 65 (314)
T ss_pred CCcE--EEEECCCCchHHHHHH---HHHhCCCEEEEE
Confidence 4444 4459999999998754 488999888877
No 187
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=44.63 E-value=60 Score=28.91 Aligned_cols=38 Identities=5% Similarity=0.037 Sum_probs=27.9
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCC-cEEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGY-KSYHC 49 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gy-k~~~~ 49 (197)
.+++.+++|++++|=+ +|..|...+.+++ .+|. +++.+
T Consensus 178 ~~~~~~~~g~~VlV~G-~G~iG~~a~q~Ak-----~~G~~~Vi~~ 216 (368)
T TIGR02818 178 LNTAKVEEGDTVAVFG-LGGIGLSVIQGAR-----MAKASRIIAI 216 (368)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCCeEEEE
Confidence 3568899999977764 5777766666777 9998 56654
No 188
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=44.20 E-value=58 Score=27.22 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=27.5
Q ss_pred CCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 12 TPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 12 ~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.+|++++|...+|..|..++-++. .+|++++.+
T Consensus 131 ~~~~~vli~g~~~~~g~~~~~~a~-----~~g~~v~~~ 163 (305)
T cd08270 131 LLGRRVLVTGASGGVGRFAVQLAA-----LAGAHVVAV 163 (305)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHH-----HcCCEEEEE
Confidence 368888888888888888888888 999997766
No 189
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=44.06 E-value=52 Score=28.29 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=24.7
Q ss_pred cCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCC-cEEEE
Q 043034 8 KGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGY-KSYHC 49 (197)
Q Consensus 8 ~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gy-k~~~~ 49 (197)
-+.+ +|++++|.+ +|..|..++.+++ .+|+ +++.+
T Consensus 161 ~~~~-~~~~VLI~g-~g~vG~~~~~lak-----~~G~~~v~~~ 196 (339)
T cd08232 161 AGDL-AGKRVLVTG-AGPIGALVVAAAR-----RAGAAEIVAT 196 (339)
T ss_pred cCCC-CCCEEEEEC-CCHHHHHHHHHHH-----HcCCcEEEEE
Confidence 3555 898888866 5666666666777 9999 56555
No 190
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=43.66 E-value=58 Score=27.58 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=28.4
Q ss_pred CCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 9 GLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 9 G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+..++|++++|-..+|..|..++.++. .+|.+++.+
T Consensus 142 ~~~~~~~~vlI~ga~g~vg~~~~~~A~-----~~G~~vi~~ 177 (324)
T cd08288 142 GVTPGDGPVLVTGAAGGVGSVAVALLA-----RLGYEVVAS 177 (324)
T ss_pred CcCCCCCEEEEECCCcHHHHHHHHHHH-----HCCCeEEEE
Confidence 333367777887788999999888888 999997765
No 191
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=43.52 E-value=37 Score=27.00 Aligned_cols=24 Identities=29% Similarity=0.218 Sum_probs=22.2
Q ss_pred eCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 21 ITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 21 ~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.-+||.|.+||...+ .+|+++++.
T Consensus 5 iGaG~~G~AlA~~la-----~~g~~V~l~ 28 (157)
T PF01210_consen 5 IGAGNWGTALAALLA-----DNGHEVTLW 28 (157)
T ss_dssp ESSSHHHHHHHHHHH-----HCTEEEEEE
T ss_pred ECcCHHHHHHHHHHH-----HcCCEEEEE
Confidence 479999999999999 999999986
No 192
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=42.56 E-value=63 Score=27.57 Aligned_cols=38 Identities=11% Similarity=0.074 Sum_probs=26.8
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.+.+.+++|++++|= ..|..|..++.++. .+|.+++.+
T Consensus 160 ~~~~~~~~~~~vlV~-g~g~vg~~~~~la~-----~~g~~v~~~ 197 (329)
T cd08298 160 LKLAGLKPGQRLGLY-GFGASAHLALQIAR-----YQGAEVFAF 197 (329)
T ss_pred HHhhCCCCCCEEEEE-CCcHHHHHHHHHHH-----HCCCeEEEE
Confidence 367889999987774 35655555555666 999987766
No 193
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=42.54 E-value=50 Score=29.43 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=29.3
Q ss_pred CCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 9 GLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 9 G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
..+++|++++|-..+|..|.+++.++. .+|.+++.+
T Consensus 189 ~~~~~g~~vlV~ga~g~iG~a~~~lak-----~~G~~vv~~ 224 (393)
T cd08246 189 NTVKPGDNVLIWGASGGLGSMAIQLAR-----AAGANPVAV 224 (393)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHH-----HcCCeEEEE
Confidence 678899997787777888888888888 999986654
No 194
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=42.48 E-value=51 Score=28.54 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=26.2
Q ss_pred CCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCc-EEEE
Q 043034 9 GLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK-SYHC 49 (197)
Q Consensus 9 G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk-~~~~ 49 (197)
+.+++|++++|++ +|..|..++-++. .+|.+ ++.+
T Consensus 157 ~~~~~g~~vlI~~-~g~vg~~a~~la~-----~~G~~~v~~~ 192 (340)
T TIGR00692 157 AGPISGKSVLVTG-AGPIGLMAIAVAK-----ASGAYPVIVS 192 (340)
T ss_pred ccCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCcEEEEE
Confidence 4467899988876 5777777777777 99997 5544
No 195
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=42.32 E-value=58 Score=27.79 Aligned_cols=38 Identities=18% Similarity=0.122 Sum_probs=27.5
Q ss_pred HcCCCCC-----CCEEEEeeCCChHHHHHHHHHhhhHHhhc-CCcEEEE
Q 043034 7 DKGLITP-----GKSILIEITSSNTGIGLAFISAVRIAAVR-GYKSYHC 49 (197)
Q Consensus 7 ~~G~i~p-----G~t~Iie~tsgntgi~lA~iaa~~~~~~~-Gyk~~~~ 49 (197)
+.+.+++ |++++|-..+|..|..++.+++ .+ |.+++.+
T Consensus 137 ~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak-----~~~G~~vi~~ 180 (336)
T TIGR02817 137 DRLGINDPVAGDKRALLIIGGAGGVGSILIQLAR-----QLTGLTVIAT 180 (336)
T ss_pred HhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHH-----HhCCCEEEEE
Confidence 4566776 8887776666777777666676 87 9987766
No 196
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=42.07 E-value=39 Score=31.63 Aligned_cols=95 Identities=11% Similarity=0.163 Sum_probs=63.3
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceecccccc-ccccccccceeEEEcC
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMG-KHLIQASCHEYCFQVS 84 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~-~~~ieGiGIDeiv~Vs 84 (197)
++=|..|+|+|++|-+.||-+|-=.--+|. .+|.+++=+. |+... .+..+-+|.|.++.-.
T Consensus 143 l~igqpk~GetvvVSaAaGaVGsvvgQiAK-----lkG~rVVGia-------------Gg~eK~~~l~~~lGfD~~idyk 204 (340)
T COG2130 143 LDIGQPKAGETVVVSAAAGAVGSVVGQIAK-----LKGCRVVGIA-------------GGAEKCDFLTEELGFDAGIDYK 204 (340)
T ss_pred HHhcCCCCCCEEEEEecccccchHHHHHHH-----hhCCeEEEec-------------CCHHHHHHHHHhcCCceeeecC
Confidence 566899999999999999999987777777 9999998651 11111 2334446677777666
Q ss_pred cHHHHHHHHHHHHHhCC--eeeehhHHHHHHHHHHhc
Q 043034 85 SEEAIETAQQLAHKEGL--LVGISSDAAAAASIKVAK 119 (197)
Q Consensus 85 DeEAi~aaR~LAr~EGI--~VG~SSGAaLAAAlklA~ 119 (197)
+++-.++..+.+= .|| +.+--+|-.+=|.+.++.
T Consensus 205 ~~d~~~~L~~a~P-~GIDvyfeNVGg~v~DAv~~~ln 240 (340)
T COG2130 205 AEDFAQALKEACP-KGIDVYFENVGGEVLDAVLPLLN 240 (340)
T ss_pred cccHHHHHHHHCC-CCeEEEEEcCCchHHHHHHHhhc
Confidence 6655555544443 455 445556666666666553
No 197
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=41.91 E-value=59 Score=27.93 Aligned_cols=37 Identities=14% Similarity=0.340 Sum_probs=27.4
Q ss_pred HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCC-cEEEE
Q 043034 7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGY-KSYHC 49 (197)
Q Consensus 7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gy-k~~~~ 49 (197)
++..+++|++++|-+ +|..|..++.++. .+|+ +++.+
T Consensus 161 ~~~~~~~~~~vlI~g-~g~vg~~~~~~a~-----~~g~~~v~~~ 198 (344)
T cd08284 161 KRAQVRPGDTVAVIG-CGPVGLCAVLSAQ-----VLGAARVFAV 198 (344)
T ss_pred HhcCCccCCEEEEEC-CcHHHHHHHHHHH-----HcCCceEEEE
Confidence 346788999977764 6777777777777 9998 66665
No 198
>PF03684 UPF0179: Uncharacterised protein family (UPF0179); InterPro: IPR005369 The function of this family is unknown, however the proteins contain two cysteine clusters that may be iron sulphur redox centres.
Probab=41.88 E-value=23 Score=29.27 Aligned_cols=31 Identities=35% Similarity=0.713 Sum_probs=22.6
Q ss_pred CCC-CC--ccccccccce-eeeccCCccccCcccCch
Q 043034 149 QSP-CP--FCSLHEACHQ-FLLPSGGERYLSTELFDS 181 (197)
Q Consensus 149 ~~~-~~--~~~~~~~~~~-~i~~d~g~rYlst~~~~~ 181 (197)
..| |+ .|..++.||- |+ ..|+||.=.....+
T Consensus 91 ~~~~C~~~~C~~~~~C~Pegl--~~g~k~~I~~vlg~ 125 (142)
T PF03684_consen 91 EPPKCDNIECESYELCHPEGL--KEGEKYKIVEVLGE 125 (142)
T ss_pred CCCCCCccCCCcccccCcccc--cCCCeEEEEEeeCC
Confidence 344 99 9999999995 44 56788876655544
No 199
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=41.21 E-value=68 Score=27.52 Aligned_cols=38 Identities=21% Similarity=0.335 Sum_probs=26.5
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCc-EEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK-SYHC 49 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk-~~~~ 49 (197)
.++..++||++++|-+ +|..|..++.++. .+|++ ++.+
T Consensus 158 l~~~~~~~g~~VlV~g-~g~vg~~~~~la~-----~~g~~~v~~~ 196 (343)
T cd08235 158 QRKAGIKPGDTVLVIG-AGPIGLLHAMLAK-----ASGARKVIVS 196 (343)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCcEEEEE
Confidence 3456789999977764 5656666666666 99999 5443
No 200
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=41.09 E-value=70 Score=27.28 Aligned_cols=37 Identities=27% Similarity=0.253 Sum_probs=27.7
Q ss_pred HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCc-EEEE
Q 043034 7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK-SYHC 49 (197)
Q Consensus 7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk-~~~~ 49 (197)
+...++||++++|-+ .|..|..++.+++ .+|++ ++++
T Consensus 153 ~~~~~~~g~~vlI~g-~g~vg~~~~~la~-----~~G~~~v~~~ 190 (334)
T cd08234 153 DLLGIKPGDSVLVFG-AGPIGLLLAQLLK-----LNGASRVTVA 190 (334)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCcEEEEE
Confidence 567889999977764 5777777777777 99998 4444
No 201
>PRK07060 short chain dehydrogenase; Provisional
Probab=40.58 E-value=55 Score=26.48 Aligned_cols=32 Identities=34% Similarity=0.375 Sum_probs=22.4
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+|++++|=..+|..|..+|...+ .+|++++++
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~-----~~g~~V~~~ 39 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALA-----QRGARVVAA 39 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHH-----HCCCEEEEE
Confidence 34565776666666666666666 899998887
No 202
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=40.56 E-value=52 Score=29.78 Aligned_cols=33 Identities=15% Similarity=0.031 Sum_probs=25.0
Q ss_pred CCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 11 ITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 11 i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.+||++++|.+ +|..|..++.+++ .+|.+++.+
T Consensus 176 ~~~g~~VlV~G-~G~vG~~avq~Ak-----~~Ga~Vi~~ 208 (375)
T PLN02178 176 KESGKRLGVNG-LGGLGHIAVKIGK-----AFGLRVTVI 208 (375)
T ss_pred CCCCCEEEEEc-ccHHHHHHHHHHH-----HcCCeEEEE
Confidence 46899977775 4777777777777 999987665
No 203
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=40.32 E-value=67 Score=28.19 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=25.2
Q ss_pred CCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 9 GLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 9 G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
..++||++++|-. .|..|...+.+++ .+|++++.+
T Consensus 168 ~~~~~g~~vlI~G-~G~vG~~a~q~ak-----~~G~~vi~~ 202 (355)
T cd08230 168 LPTWNPRRALVLG-AGPIGLLAALLLR-----LRGFEVYVL 202 (355)
T ss_pred cccCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCeEEEE
Confidence 3467899867765 4766666666777 999987765
No 204
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=40.32 E-value=1.1e+02 Score=20.54 Aligned_cols=40 Identities=13% Similarity=0.177 Sum_probs=30.2
Q ss_pred HHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 3 KDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 3 ~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+.|.++ +.+|+.+.|-.+...+-.-+.-.+. .+||++...
T Consensus 17 ~~~l~~--l~~g~~l~v~~d~~~~~~~i~~~~~-----~~g~~~~~~ 56 (69)
T cd00291 17 KKALEK--LKSGEVLEVLLDDPGAVEDIPAWAK-----ETGHEVLEV 56 (69)
T ss_pred HHHHhc--CCCCCEEEEEecCCcHHHHHHHHHH-----HcCCEEEEE
Confidence 445554 8899876666676777888888888 999998754
No 205
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=40.19 E-value=25 Score=30.21 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=22.6
Q ss_pred cCCCCCCCEEEEeeCCChHHHHHHHHHh
Q 043034 8 KGLITPGKSILIEITSSNTGIGLAFISA 35 (197)
Q Consensus 8 ~G~i~pG~t~Iie~tsgntgi~lA~iaa 35 (197)
+=.++||+. +++.-.|.-.|++-|..+
T Consensus 29 ~L~~~~g~~-l~DIGaGtGsi~iE~a~~ 55 (187)
T COG2242 29 KLRPRPGDR-LWDIGAGTGSITIEWALA 55 (187)
T ss_pred hhCCCCCCE-EEEeCCCccHHHHHHHHh
Confidence 446889997 999999999999988844
No 206
>PF05280 FlhC: Flagellar transcriptional activator (FlhC); InterPro: IPR007944 This family consists of several bacterial flagellar transcriptional activator (FlhC) proteins. FlhC combines with FlhD to form a regulatory complex in Escherichia coli, this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator [].; GO: 0003677 DNA binding, 0030092 regulation of flagellum assembly, 0045893 positive regulation of transcription, DNA-dependent; PDB: 2AVU_E.
Probab=39.90 E-value=30 Score=29.18 Aligned_cols=75 Identities=15% Similarity=0.140 Sum_probs=33.8
Q ss_pred EcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccccccceecccccCCCCCCcccc
Q 043034 82 QVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSL 157 (197)
Q Consensus 82 ~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~ 157 (197)
.+++-||+-.+.+|..+.--..|..--..+.-|+-+++..+.+--.+..|..=+-.|+. ..|.+.+...||||.+
T Consensus 88 ~~~~ieAli~AyrlY~e~~~~~~~~~~Ls~tRAW~L~R~~~sg~l~l~~C~~C~~~fv~-~~~~~~~~~~Cp~C~~ 162 (175)
T PF05280_consen 88 GCSDIEALIKAYRLYLEQCGPQGEEPVLSLTRAWTLARFFDSGMLQLAPCRRCGGHFVT-HAHDPRHSFVCPFCQP 162 (175)
T ss_dssp T--SHHHHHHHHHHHHHHS---TTS-SS-HHHHHHHHHHHHTTSEEEEE-TTT--EEEE-ESS--SS----TT---
T ss_pred CCCCHHHHHHHHHHHHHHhccCCCcccccHHHHHHHHHHHhcCCccccCCCCCCCCeEC-cCCCCCcCcCCCCCCC
Confidence 35677999999999887543334344566677777776543222233333333334443 3466677788999974
No 207
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=39.80 E-value=12 Score=38.13 Aligned_cols=18 Identities=33% Similarity=0.350 Sum_probs=14.7
Q ss_pred eeccCCccccCcccCchh
Q 043034 165 LLPSGGERYLSTELFDSI 182 (197)
Q Consensus 165 i~~d~g~rYlst~~~~~~ 182 (197)
-+..+|||||||.+|...
T Consensus 206 ~~~~~gerylst~~~~~~ 223 (699)
T PRK14535 206 SVSTGTEQKLSSEQQRLI 223 (699)
T ss_pred eeccCcceeechhhhccc
Confidence 345799999999999764
No 208
>PLN02740 Alcohol dehydrogenase-like
Probab=39.60 E-value=80 Score=28.28 Aligned_cols=39 Identities=21% Similarity=0.150 Sum_probs=27.8
Q ss_pred HHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCc-EEEE
Q 043034 5 AEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK-SYHC 49 (197)
Q Consensus 5 ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk-~~~~ 49 (197)
+.+...++||++++|=+ .|..|..++.+++ .+|.+ ++.+
T Consensus 190 ~~~~~~~~~g~~VlV~G-~G~vG~~a~q~ak-----~~G~~~Vi~~ 229 (381)
T PLN02740 190 AWNTANVQAGSSVAIFG-LGAVGLAVAEGAR-----ARGASKIIGV 229 (381)
T ss_pred HHhccCCCCCCEEEEEC-CCHHHHHHHHHHH-----HCCCCcEEEE
Confidence 34668899999966654 5766666666777 89984 6655
No 209
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=39.04 E-value=72 Score=27.53 Aligned_cols=37 Identities=14% Similarity=0.328 Sum_probs=29.7
Q ss_pred HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+.+.+.+|++++|-. +|..|..+..+++ .+|.+++.+
T Consensus 159 ~~~~~~~~~~vlV~g-~g~vg~~~~~~a~-----~~G~~vi~~ 195 (345)
T cd08260 159 HQARVKPGEWVAVHG-CGGVGLSAVMIAS-----ALGARVIAV 195 (345)
T ss_pred HccCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCeEEEE
Confidence 456788999878877 6888888888888 999987766
No 210
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=38.96 E-value=73 Score=27.26 Aligned_cols=38 Identities=18% Similarity=-0.026 Sum_probs=27.7
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhh-cCCcEEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAV-RGYKSYHC 49 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~-~Gyk~~~~ 49 (197)
.+...++||++++|-. +|..|..++.+++ . +|.+++.+
T Consensus 155 ~~~~~~~~g~~vlV~g-~g~vG~~~~~la~-----~~~g~~v~~~ 193 (338)
T PRK09422 155 IKVSGIKPGQWIAIYG-AGGLGNLALQYAK-----NVFNAKVIAV 193 (338)
T ss_pred HHhcCCCCCCEEEEEC-CcHHHHHHHHHHH-----HhCCCeEEEE
Confidence 4567799999977776 5766766666666 6 49887665
No 211
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=38.42 E-value=81 Score=27.08 Aligned_cols=38 Identities=21% Similarity=0.159 Sum_probs=28.7
Q ss_pred HcCCCC----CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 7 DKGLIT----PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 7 ~~G~i~----pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+.+.+. ||++++|-..+|..|..++.++. .+|.+++.+
T Consensus 152 ~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~-----~~G~~v~~~ 193 (350)
T cd08248 152 NVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLK-----AWGAHVTTT 193 (350)
T ss_pred HhccCCCccCCCCEEEEECCCChHHHHHHHHHH-----HCCCeEEEE
Confidence 445664 49987777767888888888888 999987654
No 212
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=38.41 E-value=1.2e+02 Score=21.10 Aligned_cols=35 Identities=14% Similarity=0.218 Sum_probs=30.0
Q ss_pred CCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 10 LITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 10 ~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.+.+|+++.|-.+...+-.-+...|. ..||++...
T Consensus 22 ~l~~G~~l~V~~d~~~s~~ni~~~~~-----~~g~~v~~~ 56 (69)
T cd03422 22 SLKPGEILEVISDCPQSINNIPIDAR-----NHGYKVLAI 56 (69)
T ss_pred cCCCCCEEEEEecCchHHHHHHHHHH-----HcCCEEEEE
Confidence 47899987888888888888999999 999999764
No 213
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=38.34 E-value=78 Score=27.19 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=27.6
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.+.+.+++|++++|-+ +|..|..+..+++ .+|.+.+++
T Consensus 154 ~~~~~~~~g~~VlI~g-~g~vg~~~~~la~-----~~G~~~v~~ 191 (341)
T cd08262 154 VRRARLTPGEVALVIG-CGPIGLAVIAALK-----ARGVGPIVA 191 (341)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCcEEEE
Confidence 4678899999977775 4666666666666 999885444
No 214
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=38.25 E-value=1.3e+02 Score=26.87 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=25.4
Q ss_pred CCCCC-EEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 11 ITPGK-SILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 11 i~pG~-t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
|.|++ + |+=..+|-.|..++..++ .+||+++.+
T Consensus 8 ~~~~~~~-ilIiG~g~~~~~~~~a~~-----~~G~~v~~~ 41 (395)
T PRK09288 8 LSPSATR-VMLLGSGELGKEVAIEAQ-----RLGVEVIAV 41 (395)
T ss_pred CCCCCCE-EEEECCCHHHHHHHHHHH-----HCCCEEEEE
Confidence 45565 5 444567888888888888 999999988
No 215
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=37.96 E-value=67 Score=27.54 Aligned_cols=35 Identities=11% Similarity=0.060 Sum_probs=27.0
Q ss_pred CCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcC-CcEEEE
Q 043034 9 GLITPGKSILIEITSSNTGIGLAFISAVRIAAVRG-YKSYHC 49 (197)
Q Consensus 9 G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~G-yk~~~~ 49 (197)
+.+++|++++|-. +|..|..++.++. .+| .+++.+
T Consensus 163 ~~~~~~~~vlI~g-~~~vg~~~~~~a~-----~~g~~~v~~~ 198 (340)
T cd05284 163 PYLDPGSTVVVIG-VGGLGHIAVQILR-----ALTPATVIAV 198 (340)
T ss_pred ccCCCCCEEEEEc-CcHHHHHHHHHHH-----HhCCCcEEEE
Confidence 4678899878877 5558888778888 898 787765
No 216
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=37.69 E-value=45 Score=29.31 Aligned_cols=32 Identities=34% Similarity=0.429 Sum_probs=23.7
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.|++.|| |.|+.|||-|+. +..+..|.+++++
T Consensus 7 ~gkvalV--TG~s~GIG~aia---~~la~~Ga~v~i~ 38 (270)
T KOG0725|consen 7 AGKVALV--TGGSSGIGKAIA---LLLAKAGAKVVIT 38 (270)
T ss_pred CCcEEEE--ECCCChHHHHHH---HHHHHCCCEEEEE
Confidence 4665455 889999985553 3366999999999
No 217
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=37.60 E-value=86 Score=26.74 Aligned_cols=38 Identities=11% Similarity=0.095 Sum_probs=26.3
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.++..+++|++++|- ..|..|..++.++. .+|++++.+
T Consensus 155 l~~~~~~~~~~vlI~-g~g~iG~~~~~~a~-----~~G~~v~~~ 192 (330)
T cd08245 155 LRDAGPRPGERVAVL-GIGGLGHLAVQYAR-----AMGFETVAI 192 (330)
T ss_pred HHhhCCCCCCEEEEE-CCCHHHHHHHHHHH-----HCCCEEEEE
Confidence 344678999886775 34556665555666 999997765
No 218
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=37.47 E-value=40 Score=30.09 Aligned_cols=32 Identities=28% Similarity=0.356 Sum_probs=23.5
Q ss_pred CCCEEEEeeCCC--hHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSS--NTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsg--ntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.|+++|| |.+ +.|||.|+.=+ ++..|.++++.
T Consensus 8 ~gk~alI--TGa~~s~GIG~a~A~~---la~~Ga~Vv~~ 41 (303)
T PLN02730 8 RGKRAFI--AGVADDNGYGWAIAKA---LAAAGAEILVG 41 (303)
T ss_pred CCCEEEE--eCCCCCCcHHHHHHHH---HHHCCCEEEEE
Confidence 3666444 777 58999887655 66899999883
No 219
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=37.36 E-value=75 Score=28.84 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=28.4
Q ss_pred CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHh
Q 043034 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISA 35 (197)
Q Consensus 1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa 35 (197)
|+++..+.=.++||++ +|++|-|+-|-+++++-+
T Consensus 7 ll~Evl~~L~~~pg~~-vlD~TlG~GGhS~~il~~ 40 (296)
T PRK00050 7 LLDEVVDALAIKPDGI-YVDGTFGGGGHSRAILER 40 (296)
T ss_pred cHHHHHHhhCCCCCCE-EEEeCcCChHHHHHHHHh
Confidence 5666666656789997 999999999999999876
No 220
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=37.22 E-value=71 Score=28.71 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=30.0
Q ss_pred cCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 8 KGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 8 ~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.+.+++|++++|-..+|..|..++.++. .+|.+++.+
T Consensus 184 ~~~~~~g~~vlV~Ga~g~vG~~ai~~ak-----~~G~~vi~~ 220 (398)
T TIGR01751 184 PATVKPGDNVLIWGAAGGLGSYATQLAR-----AGGGNPVAV 220 (398)
T ss_pred ccCCCCCCEEEEEcCCcHHHHHHHHHHH-----HcCCeEEEE
Confidence 3678999987888778888888888888 999987654
No 221
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=36.98 E-value=82 Score=27.56 Aligned_cols=38 Identities=11% Similarity=0.017 Sum_probs=25.8
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCc-EEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK-SYHC 49 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk-~~~~ 49 (197)
.++..++||++++|-+ +|..|.....+++ .+|.+ ++.+
T Consensus 162 l~~~~~~~g~~VlV~G-~G~vG~~aiqlak-----~~G~~~Vi~~ 200 (343)
T PRK09880 162 AHQAGDLQGKRVFVSG-VGPIGCLIVAAVK-----TLGAAEIVCA 200 (343)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCcEEEEE
Confidence 4455566899877755 4767766666777 89985 5444
No 222
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=36.75 E-value=2.7e+02 Score=23.89 Aligned_cols=92 Identities=15% Similarity=0.196 Sum_probs=48.1
Q ss_pred cCCCCCCCEEEEe-eCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEcCcH
Q 043034 8 KGLITPGKSILIE-ITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSE 86 (197)
Q Consensus 8 ~G~i~pG~t~Iie-~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~VsDe 86 (197)
...+.++.. +|- ..+|..|..+..+++ .+|.+++.+-.. +.. ......+|.|.++...++
T Consensus 138 ~~~~~~~~v-lv~~~g~g~vG~~a~q~a~-----~~G~~vi~~~~~---~~~----------~~~~~~~g~~~~i~~~~~ 198 (324)
T cd08291 138 TAREEGAKA-VVHTAAASALGRMLVRLCK-----ADGIKVINIVRR---KEQ----------VDLLKKIGAEYVLNSSDP 198 (324)
T ss_pred hhccCCCcE-EEEccCccHHHHHHHHHHH-----HcCCEEEEEeCC---HHH----------HHHHHHcCCcEEEECCCc
Confidence 344544554 564 455667766666777 899986654110 100 112234566777766655
Q ss_pred HHHHHHHHHHHHhC--CeeeehhHHHHHHHHHHh
Q 043034 87 EAIETAQQLAHKEG--LLVGISSDAAAAASIKVA 118 (197)
Q Consensus 87 EAi~aaR~LAr~EG--I~VG~SSGAaLAAAlklA 118 (197)
+..+..+++....| +++..+++.....+++.+
T Consensus 199 ~~~~~v~~~~~~~~~d~vid~~g~~~~~~~~~~l 232 (324)
T cd08291 199 DFLEDLKELIAKLNATIFFDAVGGGLTGQILLAM 232 (324)
T ss_pred cHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHhh
Confidence 55555555543222 455555555444444433
No 223
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=36.57 E-value=59 Score=28.72 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=17.5
Q ss_pred cCCCCCCCEEEEeeCCChHHHHHHHHHh
Q 043034 8 KGLITPGKSILIEITSSNTGIGLAFISA 35 (197)
Q Consensus 8 ~G~i~pG~t~Iie~tsgntgi~lA~iaa 35 (197)
.-.|+||+. |+|+-+|+-...+++.-+
T Consensus 35 ~l~i~pG~~-VlEaGtGSG~lt~~l~r~ 61 (247)
T PF08704_consen 35 RLDIRPGSR-VLEAGTGSGSLTHALARA 61 (247)
T ss_dssp HTT--TT-E-EEEE--TTSHHHHHHHHH
T ss_pred HcCCCCCCE-EEEecCCcHHHHHHHHHH
Confidence 457899998 999998888887777655
No 224
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=36.39 E-value=55 Score=27.89 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=21.5
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.|+++||=..|++-|||.|..-+ ++..|++++++
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~---la~~G~~vil~ 38 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQA---MHREGAELAFT 38 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHH---HHHCCCEEEEE
Confidence 45665664444444777665444 44899998876
No 225
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=35.59 E-value=1e+02 Score=22.25 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=32.2
Q ss_pred HHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 3 KDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 3 ~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+.|.++ +.+|+++.|.++-..+-.-+...|. ..|++++..
T Consensus 27 kk~l~~--l~~G~~l~V~~dd~~~~~di~~~~~-----~~G~~~~~~ 66 (81)
T PRK00299 27 RKTVRN--MQPGETLLIIADDPATTRDIPSFCR-----FMDHELLAQ 66 (81)
T ss_pred HHHHHc--CCCCCEEEEEeCCccHHHHHHHHHH-----HcCCEEEEE
Confidence 444444 7899987888888888889999999 999999854
No 226
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=35.42 E-value=83 Score=28.59 Aligned_cols=38 Identities=13% Similarity=-0.059 Sum_probs=27.9
Q ss_pred HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCC---cEEEE
Q 043034 7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGY---KSYHC 49 (197)
Q Consensus 7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gy---k~~~~ 49 (197)
+++.++||++++|=..+|-.|...+.++. .+|+ +++.+
T Consensus 169 ~~~~~~~g~~VlV~G~~G~vG~~aiq~ak-----~~G~g~~~Vi~~ 209 (410)
T cd08238 169 HRMGIKPGGNTAILGGAGPMGLMAIDYAI-----HGPIGPSLLVVT 209 (410)
T ss_pred hhcCCCCCCEEEEEeCCCHHHHHHHHHHH-----hcccCCceEEEE
Confidence 56789999986776667877777777777 8776 55554
No 227
>PRK09875 putative hydrolase; Provisional
Probab=35.23 E-value=1.4e+02 Score=26.91 Aligned_cols=88 Identities=13% Similarity=0.086 Sum_probs=50.7
Q ss_pred CCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccc---ccc-------cccccc---------
Q 043034 14 GKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHV---VMG-------KHLIQA--------- 74 (197)
Q Consensus 14 G~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~---~~~-------~~~ieG--------- 74 (197)
|+| |||+|.-..|--...+.+ +++.-|.+++...-.|.+|.-+..+... ... +..|.|
T Consensus 48 g~t-iVd~T~~g~GRd~~~l~~--is~~tgv~Iv~~TG~y~~~~~p~~~~~~~~e~la~~~i~ei~~Gi~gt~ikaGvIG 124 (292)
T PRK09875 48 VRN-VIEMTNRYMGRNAQFMLD--VMRETGINVVACTGYYQDAFFPEHVATRSVQELAQEMVDEIEQGIDGTELKAGIIA 124 (292)
T ss_pred CCe-EEecCCCccCcCHHHHHH--HHHHhCCcEEEcCcCCCCccCCHHHhcCCHHHHHHHHHHHHHHhhccCCCcccEEE
Confidence 566 999998777766655544 6669999988874333332211111100 000 011121
Q ss_pred -cccee-EEEcCcHHHHHHHHHHHHHhCCeee
Q 043034 75 -SCHEY-CFQVSSEEAIETAQQLAHKEGLLVG 104 (197)
Q Consensus 75 -iGIDe-iv~VsDeEAi~aaR~LAr~EGI~VG 104 (197)
+|.+. .++=.++++++++-+.+++.|..+-
T Consensus 125 eiG~~~~~it~~E~kvl~Aaa~a~~~TG~pi~ 156 (292)
T PRK09875 125 EIGSSEGKITPLEEKVFIAAALAHNQTGRPIS 156 (292)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHHHHCCcEE
Confidence 12222 2455678899999999999999544
No 228
>PLN02827 Alcohol dehydrogenase-like
Probab=35.14 E-value=1e+02 Score=27.74 Aligned_cols=97 Identities=11% Similarity=0.071 Sum_probs=50.1
Q ss_pred HHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEcC
Q 043034 5 AEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVS 84 (197)
Q Consensus 5 ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~Vs 84 (197)
+.+.+.++||++++|=+ .|-.|..++.+++ .+|.+.+++-.. .+. .....+.+|.|.++...
T Consensus 185 ~~~~~~~~~g~~VlV~G-~G~vG~~~iqlak-----~~G~~~vi~~~~--~~~----------~~~~a~~lGa~~~i~~~ 246 (378)
T PLN02827 185 AWNVADVSKGSSVVIFG-LGTVGLSVAQGAK-----LRGASQIIGVDI--NPE----------KAEKAKTFGVTDFINPN 246 (378)
T ss_pred HHhhcCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCCeEEEECC--CHH----------HHHHHHHcCCcEEEccc
Confidence 34568899999966654 4655555555666 899864433110 010 01123345566665544
Q ss_pred c--HHHHHHHHHHHHH-hCCeeeehhHH-HHHHHHHHhc
Q 043034 85 S--EEAIETAQQLAHK-EGLLVGISSDA-AAAASIKVAK 119 (197)
Q Consensus 85 D--eEAi~aaR~LAr~-EGI~VG~SSGA-aLAAAlklA~ 119 (197)
+ ++..+..+++... --+++..+++. .+..++++++
T Consensus 247 ~~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~l~~l~ 285 (378)
T PLN02827 247 DLSEPIQQVIKRMTGGGADYSFECVGDTGIATTALQSCS 285 (378)
T ss_pred ccchHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhc
Confidence 3 2333334444321 12455655543 4556666654
No 229
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.96 E-value=75 Score=25.72 Aligned_cols=31 Identities=29% Similarity=0.290 Sum_probs=20.7
Q ss_pred CCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 14 GKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 14 G~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+++++|=..+|..|..++.... .+|++++++
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~-----~~G~~V~~~ 35 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFA-----AEGARVVVT 35 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHH-----HCCCEEEEE
Confidence 3455665555656666665566 899998877
No 230
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=34.83 E-value=1.1e+02 Score=27.01 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=26.6
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYH 48 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~ 48 (197)
.+...++||++++|- .+|..|..++.++. .+|++.++
T Consensus 176 ~~~~~~~~g~~vlI~-g~g~vG~~a~~~a~-----~~G~~~v~ 212 (365)
T cd05279 176 VNTAKVTPGSTCAVF-GLGGVGLSVIMGCK-----AAGASRII 212 (365)
T ss_pred HhccCCCCCCEEEEE-CCCHHHHHHHHHHH-----HcCCCeEE
Confidence 456789999997775 45666666666777 99997443
No 231
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=34.75 E-value=96 Score=27.75 Aligned_cols=38 Identities=13% Similarity=0.200 Sum_probs=27.3
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCC-cEEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGY-KSYHC 49 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gy-k~~~~ 49 (197)
.+.+.+++|++++|= ..|..|..+++++. .+|. +++.+
T Consensus 183 ~~~~~~~~g~~VlV~-G~g~vG~~~~~~a~-----~~G~~~Vi~~ 221 (373)
T cd08299 183 VNTAKVTPGSTCAVF-GLGGVGLSAIMGCK-----AAGASRIIAV 221 (373)
T ss_pred HhccCCCCCCEEEEE-CCCHHHHHHHHHHH-----HcCCCeEEEE
Confidence 467889999986665 45666666666666 9998 56655
No 232
>PRK08445 hypothetical protein; Provisional
Probab=34.47 E-value=54 Score=29.99 Aligned_cols=47 Identities=15% Similarity=0.325 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCCCCCceEEEeecccccccceecccccCC-----CCCCccccccccceeeeccCCccccC
Q 043034 111 AAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQ-----SPCPFCSLHEACHQFLLPSGGERYLS 175 (197)
Q Consensus 111 LAAAlklA~~~~~~g~~VVt~~~~~d~~~s~~~~~~~~~-----~~~~~~~~~~~~~~~i~~d~g~rYls 175 (197)
..+|-++.++.. +.+|++ |.+|..+|- .-|.||++.. .+..+++|+-
T Consensus 22 ~~~A~~vr~~~~--g~~v~~----------~~~~~~in~Tn~C~~~C~FCa~~~------~~~~~~~y~l 73 (348)
T PRK08445 22 GEMALERKQELH--PEKITT----------FIVDRNINYTNICWVDCKFCAFYR------HLKEDDAYIL 73 (348)
T ss_pred HHHHHHHHHHHc--CCcEEE----------EecccccccccccccCCccCCCcc------CCCCCCCeeC
Confidence 344445544432 345666 667777773 3689998753 2234467743
No 233
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=34.38 E-value=3.7e+02 Score=25.16 Aligned_cols=48 Identities=29% Similarity=0.335 Sum_probs=38.4
Q ss_pred cCcHHHHHHHHHHHHHhCCeeeeh-hHHHHHHHHHHhcCCC-CCCceEEE
Q 043034 83 VSSEEAIETAQQLAHKEGLLVGIS-SDAAAAASIKVAKIPE-NDRILIVV 130 (197)
Q Consensus 83 VsDeEAi~aaR~LAr~EGI~VG~S-SGAaLAAAlklA~~~~-~~g~~VVt 130 (197)
+.++|-++..+.+++.|||+.-|= +|-++...+..+++.. +++..|+.
T Consensus 258 ~p~~e~~e~i~~~~~~eGillDpVYtgKam~Glid~~~k~~f~~~~~vLf 307 (323)
T COG2515 258 KPNEEDIEAIKLLARLEGILLDPVYTGKAMYGLIDLARKGEFPDGSPVLF 307 (323)
T ss_pred CcCHHHHHHHHHHHHhhCcccccccchHHHHHHHHHHhcccCCCCCceEE
Confidence 567888999999999999998874 6788999999998765 34445554
No 234
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=34.23 E-value=92 Score=29.27 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=19.9
Q ss_pred EEEcCcHHHHHHHHHHHHHhCCeeeehhHHH
Q 043034 80 CFQVSSEEAIETAQQLAHKEGLLVGISSDAA 110 (197)
Q Consensus 80 iv~VsDeEAi~aaR~LAr~EGI~VG~SSGAa 110 (197)
+-.+...+++...+.......++||...=+.
T Consensus 299 l~L~~~pdIl~~l~~~~~~~~~~VGFaaEt~ 329 (399)
T PRK05579 299 LELVPNPDILAEVAALKDKRPFVVGFAAETG 329 (399)
T ss_pred EEEEeCcHHHHHHHhccCCCCEEEEEccCCc
Confidence 4455677888887765432228899876654
No 235
>PRK10083 putative oxidoreductase; Provisional
Probab=33.59 E-value=1e+02 Score=26.47 Aligned_cols=39 Identities=13% Similarity=0.004 Sum_probs=25.7
Q ss_pred HHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhh-cCCcEEEE
Q 043034 5 AEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAV-RGYKSYHC 49 (197)
Q Consensus 5 ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~-~Gyk~~~~ 49 (197)
+.+.+.++||++++|-. +|-.|..++.+++ . +|.+.+++
T Consensus 152 ~~~~~~~~~g~~vlI~g-~g~vG~~~~~~a~-----~~~G~~~v~~ 191 (339)
T PRK10083 152 VTGRTGPTEQDVALIYG-AGPVGLTIVQVLK-----GVYNVKAVIV 191 (339)
T ss_pred HHHhcCCCCCCEEEEEC-CCHHHHHHHHHHH-----HhCCCCEEEE
Confidence 35677899999877755 6655555555555 5 59875554
No 236
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=33.38 E-value=77 Score=26.33 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHHHHhCC---eeeehhHHHHHHHHHH
Q 043034 85 SEEAIETAQQLAHKEGL---LVGISSDAAAAASIKV 117 (197)
Q Consensus 85 DeEAi~aaR~LAr~EGI---~VG~SSGAaLAAAlkl 117 (197)
-+++++..++..+++|= ++|-|-||++++.+-.
T Consensus 86 ~~~sl~~l~~~i~~~GPfdGvlGFSQGA~lAa~ll~ 121 (212)
T PF03959_consen 86 LDESLDYLRDYIEENGPFDGVLGFSQGAALAALLLA 121 (212)
T ss_dssp -HHHHHHHHHHHHHH---SEEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeecHHHHHHHHHHH
Confidence 37899999999999995 7899999999887654
No 237
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=33.33 E-value=79 Score=23.23 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=51.9
Q ss_pred HHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEcCcHHHHHHHHHHHHHhCC--eee
Q 043034 27 GIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQLAHKEGL--LVG 104 (197)
Q Consensus 27 gi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~VsDeEAi~aaR~LAr~EGI--~VG 104 (197)
|+....+++ .+|++++.+- +.+ ...-.++.+|.|.++..++++..+..+.+....|+ .+.
T Consensus 3 G~~a~q~ak-----~~G~~vi~~~-----~~~--------~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid 64 (130)
T PF00107_consen 3 GLMAIQLAK-----AMGAKVIATD-----RSE--------EKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVID 64 (130)
T ss_dssp HHHHHHHHH-----HTTSEEEEEE-----SSH--------HHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEE
T ss_pred HHHHHHHHH-----HcCCEEEEEE-----CCH--------HHHHHHHhhcccccccccccccccccccccccccceEEEE
Confidence 444555556 9998877762 111 01123456778999999888888888888765343 667
Q ss_pred ehh-HHHHHHHHHHhcC
Q 043034 105 ISS-DAAAAASIKVAKI 120 (197)
Q Consensus 105 ~SS-GAaLAAAlklA~~ 120 (197)
.++ +..+..+++++++
T Consensus 65 ~~g~~~~~~~~~~~l~~ 81 (130)
T PF00107_consen 65 CVGSGDTLQEAIKLLRP 81 (130)
T ss_dssp SSSSHHHHHHHHHHEEE
T ss_pred ecCcHHHHHHHHHHhcc
Confidence 777 8888889988875
No 238
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=33.26 E-value=87 Score=25.60 Aligned_cols=35 Identities=23% Similarity=0.234 Sum_probs=21.8
Q ss_pred CCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEe
Q 043034 11 ITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCP 50 (197)
Q Consensus 11 i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p 50 (197)
+.+|++++| |.|+.|||.+++-. ++..|++++++-
T Consensus 9 ~~~~k~vlI--tG~~g~iG~~la~~---l~~~G~~Vi~~~ 43 (247)
T PRK08945 9 LLKDRIILV--TGAGDGIGREAALT---YARHGATVILLG 43 (247)
T ss_pred ccCCCEEEE--eCCCchHHHHHHHH---HHHCCCcEEEEe
Confidence 346677566 44555566555533 237899998873
No 239
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=33.12 E-value=59 Score=22.52 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=19.6
Q ss_pred CCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 22 TSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 22 tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
-+|-+|++.|+..+ ..|++++++
T Consensus 3 GaG~sGl~aA~~L~-----~~g~~v~v~ 25 (68)
T PF13450_consen 3 GAGISGLAAAYYLA-----KAGYRVTVF 25 (68)
T ss_dssp S-SHHHHHHHHHHH-----HTTSEEEEE
T ss_pred eeCHHHHHHHHHHH-----HCCCcEEEE
Confidence 47889999999999 899999997
No 240
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=32.62 E-value=82 Score=27.20 Aligned_cols=33 Identities=21% Similarity=0.164 Sum_probs=25.3
Q ss_pred CCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCc-EEEE
Q 043034 11 ITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK-SYHC 49 (197)
Q Consensus 11 i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk-~~~~ 49 (197)
..+|++++|++ +|..|..+..++. .+|.+ ++.+
T Consensus 161 ~~~g~~vlV~~-~g~vg~~~~~la~-----~~G~~~v~~~ 194 (341)
T PRK05396 161 DLVGEDVLITG-AGPIGIMAAAVAK-----HVGARHVVIT 194 (341)
T ss_pred CCCCCeEEEEC-CCHHHHHHHHHHH-----HcCCCEEEEE
Confidence 45889988876 6888888888888 99995 5544
No 241
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=32.20 E-value=85 Score=27.17 Aligned_cols=34 Identities=21% Similarity=0.144 Sum_probs=26.1
Q ss_pred CCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCC-cEEEE
Q 043034 10 LITPGKSILIEITSSNTGIGLAFISAVRIAAVRGY-KSYHC 49 (197)
Q Consensus 10 ~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gy-k~~~~ 49 (197)
..+||++++|++ +|..|..++.+++ .+|. +++.+
T Consensus 160 ~~~~g~~vlV~g-~g~vg~~~~~la~-----~~G~~~v~~~ 194 (341)
T cd05281 160 GDVSGKSVLITG-CGPIGLMAIAVAK-----AAGASLVIAS 194 (341)
T ss_pred cCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCcEEEEE
Confidence 447899888876 5888888888888 9998 46554
No 242
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=32.07 E-value=48 Score=28.41 Aligned_cols=25 Identities=12% Similarity=-0.017 Sum_probs=20.9
Q ss_pred eeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 20 EITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 20 e~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
-.+||-.|.+||-... .+|++++++
T Consensus 22 N~SSG~iG~aLA~~L~-----~~G~~V~li 46 (229)
T PRK06732 22 NHSTGQLGKIIAETFL-----AAGHEVTLV 46 (229)
T ss_pred CccchHHHHHHHHHHH-----hCCCEEEEE
Confidence 3578888888887777 999999998
No 243
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=31.82 E-value=62 Score=28.75 Aligned_cols=34 Identities=24% Similarity=0.234 Sum_probs=22.8
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.|+++||=..+.+.|||.|.+-+ +|..|+++++.
T Consensus 7 ~gk~alITGa~~~~GIG~a~A~~---la~~Ga~Vvv~ 40 (299)
T PRK06300 7 TGKIAFIAGIGDDQGYGWGIAKA---LAEAGATILVG 40 (299)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHH---HHHCCCEEEEE
Confidence 36664552222258898887655 67999999984
No 244
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=31.74 E-value=1.1e+02 Score=24.73 Aligned_cols=30 Identities=17% Similarity=0.396 Sum_probs=24.1
Q ss_pred HHHcCCCCCCCEEEEeeCCChHHHHHHHHHh
Q 043034 5 AEDKGLITPGKSILIEITSSNTGIGLAFISA 35 (197)
Q Consensus 5 ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa 35 (197)
.++...++||++ |+|..+|+-++..++...
T Consensus 24 ~~~~~~i~~g~~-VLDiG~GtG~~~~~l~~~ 53 (188)
T TIGR00438 24 NQKFKLIKPGDT-VLDLGAAPGGWSQVAVEQ 53 (188)
T ss_pred HHHhcccCCCCE-EEEecCCCCHHHHHHHHH
Confidence 345678899998 999999998887766555
No 245
>PRK09186 flagellin modification protein A; Provisional
Probab=31.62 E-value=91 Score=25.44 Aligned_cols=32 Identities=25% Similarity=0.150 Sum_probs=20.2
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.|++++|-..||..|..+|-..+ ..||+++.+
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~-----~~g~~v~~~ 34 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAIL-----EAGGIVIAA 34 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHH-----HCCCEEEEE
Confidence 35565665555544444554455 899998887
No 246
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=31.52 E-value=86 Score=27.52 Aligned_cols=34 Identities=29% Similarity=0.452 Sum_probs=25.2
Q ss_pred CEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEe
Q 043034 15 KSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCP 50 (197)
Q Consensus 15 ~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p 50 (197)
..++|=+-+||.| |=++++| |.++.+||++.++.
T Consensus 61 ~~V~VlcG~GNNG-GDGlv~A-R~L~~~G~~V~v~~ 94 (246)
T PLN03050 61 PRVLLVCGPGNNG-GDGLVAA-RHLAHFGYEVTVCY 94 (246)
T ss_pred CeEEEEECCCCCc-hhHHHHH-HHHHHCCCeEEEEE
Confidence 4457888888876 4455555 67779999999884
No 247
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.21 E-value=96 Score=24.99 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=21.3
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+|++++|=..+|..|..++-..+ ..|++++.+
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~-----~~G~~V~~~ 35 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFAL-----KEGAQVCIN 35 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHH-----HCCCEEEEE
Confidence 35565665555555555555555 899999887
No 248
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=31.20 E-value=73 Score=28.22 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=23.8
Q ss_pred HHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEe
Q 043034 2 IKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCP 50 (197)
Q Consensus 2 i~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p 50 (197)
++...++=.|+||++ |+|..+|--|.++- ++ ...|.+++-+-
T Consensus 51 ~~~~~~~~~l~~G~~-vLDiGcGwG~~~~~--~a----~~~g~~v~git 92 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDR-VLDIGCGWGGLAIY--AA----ERYGCHVTGIT 92 (273)
T ss_dssp HHHHHTTTT--TT-E-EEEES-TTSHHHHH--HH----HHH--EEEEEE
T ss_pred HHHHHHHhCCCCCCE-EEEeCCCccHHHHH--HH----HHcCcEEEEEE
Confidence 445556667999998 99999996555544 33 13388888773
No 249
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=31.11 E-value=97 Score=25.21 Aligned_cols=32 Identities=31% Similarity=0.408 Sum_probs=19.7
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
++++++| |.++.|||.+++-+ ++.+|++++.+
T Consensus 7 ~~k~vlI--tGas~~iG~~la~~---l~~~G~~v~~~ 38 (252)
T PRK08220 7 SGKTVWV--TGAAQGIGYAVALA---FVEAGAKVIGF 38 (252)
T ss_pred CCCEEEE--eCCCchHHHHHHHH---HHHCCCEEEEE
Confidence 3556566 54555555555433 33889999888
No 250
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=31.05 E-value=76 Score=26.57 Aligned_cols=32 Identities=19% Similarity=0.105 Sum_probs=20.4
Q ss_pred CCCEEEEeeCCCh--HHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSN--TGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgn--tgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.|+++|| |.|. .|||.|++-. .+..|++++++
T Consensus 9 ~~k~~lI--tGas~g~GIG~a~a~~---la~~G~~v~l~ 42 (258)
T PRK07533 9 AGKRGLV--VGIANEQSIAWGCARA---FRALGAELAVT 42 (258)
T ss_pred CCCEEEE--ECCCCCCcHHHHHHHH---HHHcCCEEEEE
Confidence 3566455 4443 4777776544 44899998887
No 251
>PRK05993 short chain dehydrogenase; Provisional
Probab=31.00 E-value=1e+02 Score=26.02 Aligned_cols=32 Identities=31% Similarity=0.487 Sum_probs=21.1
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.++++|| |.|+.|||.+++-. ++.+|++++++
T Consensus 3 ~~k~vlI--tGasggiG~~la~~---l~~~G~~Vi~~ 34 (277)
T PRK05993 3 MKRSILI--TGCSSGIGAYCARA---LQSDGWRVFAT 34 (277)
T ss_pred CCCEEEE--eCCCcHHHHHHHHH---HHHCCCEEEEE
Confidence 4555454 66666777666433 34889999887
No 252
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=30.92 E-value=1.4e+02 Score=26.20 Aligned_cols=38 Identities=11% Similarity=0.190 Sum_probs=28.3
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCc-EEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK-SYHC 49 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk-~~~~ 49 (197)
.+.+.+++|++++|-+ .|..|..++.++. .+|++ ++.+
T Consensus 175 ~~~~~~~~g~~vLI~g-~g~vG~a~i~lak-----~~G~~~Vi~~ 213 (363)
T cd08279 175 VNTARVRPGDTVAVIG-CGGVGLNAIQGAR-----IAGASRIIAV 213 (363)
T ss_pred HhccCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCCcEEEE
Confidence 4567789999877774 5777777777777 99997 6554
No 253
>PRK07326 short chain dehydrogenase; Provisional
Probab=30.89 E-value=95 Score=25.00 Aligned_cols=32 Identities=31% Similarity=0.307 Sum_probs=22.8
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
++++++|=..+|..|..+|...+ .+|++++++
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~-----~~g~~V~~~ 36 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALL-----AEGYKVAIT 36 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHH-----HCCCEEEEe
Confidence 45665776666767777766666 889998887
No 254
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=30.78 E-value=25 Score=23.48 Aligned_cols=9 Identities=33% Similarity=1.165 Sum_probs=6.7
Q ss_pred CCCCCcccc
Q 043034 149 QSPCPFCSL 157 (197)
Q Consensus 149 ~~~~~~~~~ 157 (197)
.-+||||.-
T Consensus 2 ~f~CP~C~~ 10 (54)
T PF05605_consen 2 SFTCPYCGK 10 (54)
T ss_pred CcCCCCCCC
Confidence 457999865
No 255
>PRK08703 short chain dehydrogenase; Provisional
Probab=30.73 E-value=95 Score=25.24 Aligned_cols=31 Identities=26% Similarity=0.188 Sum_probs=20.0
Q ss_pred CCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 14 GKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 14 G~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
|++++|=..||.-|..+|-..+ .+|++++++
T Consensus 6 ~k~vlItG~sggiG~~la~~l~-----~~g~~V~~~ 36 (239)
T PRK08703 6 DKTILVTGASQGLGEQVAKAYA-----AAGATVILV 36 (239)
T ss_pred CCEEEEECCCCcHHHHHHHHHH-----HcCCEEEEE
Confidence 4555665555555555555555 899998877
No 256
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=30.68 E-value=91 Score=27.97 Aligned_cols=33 Identities=36% Similarity=0.500 Sum_probs=20.6
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEe
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCP 50 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p 50 (197)
.++++||=..| .|||.+++-. +|.+||+++++-
T Consensus 5 ~~~~~lITGAS--sGIG~~~A~~---lA~~g~~liLva 37 (265)
T COG0300 5 KGKTALITGAS--SGIGAELAKQ---LARRGYNLILVA 37 (265)
T ss_pred CCcEEEEECCC--chHHHHHHHH---HHHCCCEEEEEe
Confidence 34555664444 4555554332 559999999993
No 257
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=30.65 E-value=1.3e+02 Score=25.80 Aligned_cols=36 Identities=17% Similarity=0.105 Sum_probs=26.8
Q ss_pred cCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCc-EEEE
Q 043034 8 KGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK-SYHC 49 (197)
Q Consensus 8 ~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk-~~~~ 49 (197)
...++||+.++|-+ +|..|..+.-+++ .+|.+ ++.+
T Consensus 154 ~~~~~~~~~vlI~g-~g~~g~~~~~lA~-----~~G~~~v~~~ 190 (343)
T cd08236 154 LAGITLGDTVVVIG-AGTIGLLAIQWLK-----ILGAKRVIAV 190 (343)
T ss_pred hcCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCCEEEEE
Confidence 55688998877764 5777777777777 99998 5554
No 258
>KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism]
Probab=30.59 E-value=86 Score=28.31 Aligned_cols=42 Identities=14% Similarity=0.170 Sum_probs=38.7
Q ss_pred EEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC
Q 043034 81 FQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE 122 (197)
Q Consensus 81 v~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~ 122 (197)
.+||++|..+++.+.+...+.++-|-++.++-.+.+...+-.
T Consensus 149 e~vS~ee~~~ti~k~yes~~YiLdPHTAVav~~~~r~idkt~ 190 (266)
T KOG2616|consen 149 ERVSNEETTQTIKKIYESNHYILDPHTAVAVNYHYRQIDKTQ 190 (266)
T ss_pred hhcCcHHHHHHHHHHhccCCeeecCchHHHHHHHHHHHhccC
Confidence 589999999999999999999999999999999999887753
No 259
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=30.59 E-value=1.3e+02 Score=25.53 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=28.4
Q ss_pred HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+.+.+++|++++|-..+|..|..+..++. .+|.+++.+
T Consensus 133 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~-----~~g~~v~~~ 170 (331)
T cd08273 133 RAAKVLTGQRVLIHGASGGVGQALLELAL-----LAGAEVYGT 170 (331)
T ss_pred HhcCCCCCCEEEEECCCcHHHHHHHHHHH-----HcCCEEEEE
Confidence 34678999997776666777777666777 899887665
No 260
>KOG2923 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.70 E-value=21 Score=26.08 Aligned_cols=9 Identities=56% Similarity=1.184 Sum_probs=7.2
Q ss_pred CCCCccccc
Q 043034 150 SPCPFCSLH 158 (197)
Q Consensus 150 ~~~~~~~~~ 158 (197)
.+||.|||-
T Consensus 45 a~CpsCSL~ 53 (67)
T KOG2923|consen 45 ARCPSCSLI 53 (67)
T ss_pred ecCCCceEE
Confidence 379999983
No 261
>PRK12828 short chain dehydrogenase; Provisional
Probab=29.67 E-value=1e+02 Score=24.53 Aligned_cols=31 Identities=26% Similarity=0.146 Sum_probs=21.5
Q ss_pred CCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 14 GKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 14 G~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
|++++|=..+|..|..+|...+ .+|++++++
T Consensus 7 ~k~vlItGatg~iG~~la~~l~-----~~G~~v~~~ 37 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLA-----ARGARVALI 37 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHH-----HCCCeEEEE
Confidence 5566775566666666665555 889998877
No 262
>PRK04148 hypothetical protein; Provisional
Probab=29.64 E-value=68 Score=26.00 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=26.6
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+++. ++|.-.| +|..+|...+ .+|++++.+
T Consensus 16 ~~~k-ileIG~G-fG~~vA~~L~-----~~G~~ViaI 45 (134)
T PRK04148 16 KNKK-IVELGIG-FYFKVAKKLK-----ESGFDVIVI 45 (134)
T ss_pred cCCE-EEEEEec-CCHHHHHHHH-----HCCCEEEEE
Confidence 4566 8999999 9999999888 999999998
No 263
>PRK06523 short chain dehydrogenase; Provisional
Probab=29.56 E-value=97 Score=25.49 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=19.7
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+|+++||-..|| |||.+++-+ ++.+|++++++
T Consensus 8 ~~k~vlItGas~--gIG~~ia~~---l~~~G~~v~~~ 39 (260)
T PRK06523 8 AGKRALVTGGTK--GIGAATVAR---LLEAGARVVTT 39 (260)
T ss_pred CCCEEEEECCCC--chhHHHHHH---HHHCCCEEEEE
Confidence 356656644444 555555443 23889998887
No 264
>PRK06949 short chain dehydrogenase; Provisional
Probab=29.14 E-value=1.1e+02 Score=24.99 Aligned_cols=32 Identities=31% Similarity=0.469 Sum_probs=20.2
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.|++++| |.|+.|||.+++.. ++.+|++++++
T Consensus 8 ~~k~ilI--tGasg~IG~~~a~~---l~~~G~~Vi~~ 39 (258)
T PRK06949 8 EGKVALV--TGASSGLGARFAQV---LAQAGAKVVLA 39 (258)
T ss_pred CCCEEEE--ECCCcHHHHHHHHH---HHHCCCEEEEE
Confidence 4566566 54555566555544 33889998887
No 265
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=29.14 E-value=52 Score=31.90 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=22.5
Q ss_pred eCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 21 ITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 21 ~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.|||-+|.+||-.++ .+|.+++++
T Consensus 279 ~SSGkmG~alA~aa~-----~~GA~VtlI 302 (475)
T PRK13982 279 RSSGKQGFAIAAAAA-----AAGAEVTLI 302 (475)
T ss_pred CCchHHHHHHHHHHH-----HCCCcEEEE
Confidence 469999999999999 999999999
No 266
>PF09329 zf-primase: Primase zinc finger; InterPro: IPR015408 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This zinc finger domain is found in Mcm10 proteins and DnaG-type primases []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0006260 DNA replication, 0005634 nucleus; PDB: 3H15_A 3EBE_C.
Probab=29.05 E-value=22 Score=23.63 Aligned_cols=16 Identities=31% Similarity=0.586 Sum_probs=10.2
Q ss_pred ccccCCCCCCcccccc
Q 043034 144 NSLVNQSPCPFCSLHE 159 (197)
Q Consensus 144 ~~~~~~~~~~~~~~~~ 159 (197)
++.||.+-|.||.+|-
T Consensus 20 ~~~Vn~~~~~~C~yH~ 35 (46)
T PF09329_consen 20 TNPVNKSKGEYCDYHV 35 (46)
T ss_dssp --EEETTT-SS-TTTH
T ss_pred cCceeCCCCcccHHHH
Confidence 3567889999999984
No 267
>PRK06125 short chain dehydrogenase; Provisional
Probab=28.77 E-value=1.1e+02 Score=25.32 Aligned_cols=31 Identities=29% Similarity=0.240 Sum_probs=20.5
Q ss_pred CCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 14 GKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 14 G~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
|+++||-..+|..|.++|-..+ .+|++++++
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~-----~~G~~V~~~ 37 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFA-----AEGCHLHLV 37 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHH-----HcCCEEEEE
Confidence 5565775555555555555555 889998887
No 268
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=28.64 E-value=1.9e+02 Score=24.20 Aligned_cols=42 Identities=21% Similarity=0.101 Sum_probs=30.4
Q ss_pred HHHHHHc---CCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 2 IKDAEDK---GLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 2 i~~ae~~---G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
++.+.++ +.=-.|++ ++=.-.||.|..+|.... .+|++++.+
T Consensus 13 ~~~~~~~~~~~~~l~gk~-v~I~G~G~vG~~~A~~L~-----~~G~~Vvv~ 57 (200)
T cd01075 13 MKAAAEHLLGTDSLEGKT-VAVQGLGKVGYKLAEHLL-----EEGAKLIVA 57 (200)
T ss_pred HHHHHHHhcCCCCCCCCE-EEEECCCHHHHHHHHHHH-----HCCCEEEEE
Confidence 3445444 33335777 566667899999999888 999999965
No 269
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=28.44 E-value=1.2e+02 Score=24.27 Aligned_cols=31 Identities=29% Similarity=0.300 Sum_probs=18.9
Q ss_pred CCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 14 GKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 14 G~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
++++||=..||..|..++-..+ .+||+++++
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~-----~~g~~v~~~ 35 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLA-----ADGAKVVIY 35 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHH-----HCCCEEEEE
Confidence 4555664444555555554555 889998776
No 270
>PRK14967 putative methyltransferase; Provisional
Probab=28.37 E-value=1.3e+02 Score=25.03 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=23.7
Q ss_pred HHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCC-cEEEE
Q 043034 5 AEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGY-KSYHC 49 (197)
Q Consensus 5 ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gy-k~~~~ 49 (197)
...+-.++||+. |+|.-+|+-.+++. .+ .+|. +++.+
T Consensus 28 ~l~~~~~~~~~~-vLDlGcG~G~~~~~--la-----~~~~~~v~~v 65 (223)
T PRK14967 28 ALAAEGLGPGRR-VLDLCTGSGALAVA--AA-----AAGAGSVTAV 65 (223)
T ss_pred HHHhcccCCCCe-EEEecCCHHHHHHH--HH-----HcCCCeEEEE
Confidence 344445789998 99999998444433 34 3455 55555
No 271
>PRK07577 short chain dehydrogenase; Provisional
Probab=28.01 E-value=1.2e+02 Score=24.43 Aligned_cols=31 Identities=29% Similarity=0.420 Sum_probs=19.1
Q ss_pred CCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 14 GKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 14 G~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+++++| |.|+.|||.+++-. ++.+|++++++
T Consensus 3 ~k~vlI--tG~s~~iG~~ia~~---l~~~G~~v~~~ 33 (234)
T PRK07577 3 SRTVLV--TGATKGIGLALSLR---LANLGHQVIGI 33 (234)
T ss_pred CCEEEE--ECCCCcHHHHHHHH---HHHCCCEEEEE
Confidence 455455 45555565555432 33899999887
No 272
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=27.92 E-value=1.1e+02 Score=25.08 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=19.0
Q ss_pred CEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 15 KSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 15 ~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+++|| |.|+.|||.+++-. ++.+|++++++
T Consensus 3 k~ilI--tG~~~~IG~~la~~---l~~~g~~vi~~ 32 (259)
T PRK12384 3 QVAVV--IGGGQTLGAFLCHG---LAEEGYRVAVA 32 (259)
T ss_pred CEEEE--ECCCcHHHHHHHHH---HHHCCCEEEEE
Confidence 34455 55555666655533 33889999888
No 273
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.70 E-value=90 Score=25.75 Aligned_cols=36 Identities=25% Similarity=0.233 Sum_probs=21.4
Q ss_pred CCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecc
Q 043034 14 GKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTR 52 (197)
Q Consensus 14 G~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~ 52 (197)
|+++||=..||.+|||.+++-. ++.+|++++++-..
T Consensus 5 ~k~vlItGas~~~giG~~la~~---l~~~G~~vi~~~r~ 40 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRR---LAAKGIDIFFTYWS 40 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHH---HHHcCCcEEEEcCC
Confidence 3454564434335777665444 44789999887433
No 274
>PRK05875 short chain dehydrogenase; Provisional
Probab=27.66 E-value=1.2e+02 Score=25.34 Aligned_cols=31 Identities=19% Similarity=0.153 Sum_probs=21.5
Q ss_pred CCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 14 GKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 14 G~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
++++||-..||..|..+|-..+ .+|++++++
T Consensus 7 ~k~vlItGasg~IG~~la~~l~-----~~G~~V~~~ 37 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLV-----AAGAAVMIV 37 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHH-----HCCCeEEEE
Confidence 4555776666666666655556 899998887
No 275
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=27.53 E-value=1.2e+02 Score=24.94 Aligned_cols=32 Identities=31% Similarity=0.442 Sum_probs=20.8
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.|++++| |.|+.|||.+++-. ++.+|++++++
T Consensus 9 ~~k~vlI--tGa~g~iG~~ia~~---l~~~G~~V~~~ 40 (255)
T PRK07523 9 TGRRALV--TGSSQGIGYALAEG---LAQAGAEVILN 40 (255)
T ss_pred CCCEEEE--ECCcchHHHHHHHH---HHHcCCEEEEE
Confidence 3556455 66666666666544 33789998876
No 276
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=27.19 E-value=1.2e+02 Score=25.08 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=19.1
Q ss_pred CCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 14 GKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 14 G~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
|+++||-. |+.|||.|++-. ++.+|++++.+
T Consensus 10 ~k~~lItG--~~~gIG~a~a~~---l~~~G~~vv~~ 40 (253)
T PRK08993 10 GKVAVVTG--CDTGLGQGMALG---LAEAGCDIVGI 40 (253)
T ss_pred CCEEEEEC--CCchHHHHHHHH---HHHCCCEEEEe
Confidence 55656644 444555555443 33899998876
No 277
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=27.14 E-value=1.2e+02 Score=25.21 Aligned_cols=32 Identities=38% Similarity=0.413 Sum_probs=19.1
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.|.++|| |.|+.|||.+++-. .+.+|++++++
T Consensus 9 ~~k~~lI--tGa~~~iG~~ia~~---l~~~G~~vv~~ 40 (265)
T PRK07097 9 KGKIALI--TGASYGIGFAIAKA---YAKAGATIVFN 40 (265)
T ss_pred CCCEEEE--eCCCchHHHHHHHH---HHHCCCeEEEE
Confidence 3555566 44444555544433 23899998887
No 278
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=27.07 E-value=1.4e+02 Score=27.86 Aligned_cols=39 Identities=15% Similarity=0.282 Sum_probs=35.0
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
++-+.++||+|++|-+..|--|.-|--+++ .+|-.++..
T Consensus 139 ~e~y~vkpGhtVlvhaAAGGVGlll~Ql~r-----a~~a~tI~~ 177 (336)
T KOG1197|consen 139 FEAYNVKPGHTVLVHAAAGGVGLLLCQLLR-----AVGAHTIAT 177 (336)
T ss_pred HHhcCCCCCCEEEEEeccccHHHHHHHHHH-----hcCcEEEEE
Confidence 566889999999999999999999999999 999888876
No 279
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=27.00 E-value=1.1e+02 Score=29.35 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=29.5
Q ss_pred CCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 11 ITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 11 i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.++|+. |+-.-+|-.|+..|..++ .+|++++++
T Consensus 134 ~~~g~~-V~VIGaGpaGL~aA~~l~-----~~G~~V~v~ 166 (564)
T PRK12771 134 PDTGKR-VAVIGGGPAGLSAAYHLR-----RMGHAVTIF 166 (564)
T ss_pred CCCCCE-EEEECCCHHHHHHHHHHH-----HCCCeEEEE
Confidence 678998 888899999999999988 999998887
No 280
>PRK06181 short chain dehydrogenase; Provisional
Probab=26.86 E-value=1.2e+02 Score=24.97 Aligned_cols=29 Identities=24% Similarity=0.173 Sum_probs=17.4
Q ss_pred EEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 16 SILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 16 t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+++|=..||..|..++...+ .+|++++++
T Consensus 3 ~vlVtGasg~iG~~la~~l~-----~~g~~Vi~~ 31 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLA-----RAGAQLVLA 31 (263)
T ss_pred EEEEecCCcHHHHHHHHHHH-----HCCCEEEEE
Confidence 44554444444444444455 899999887
No 281
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=26.84 E-value=1.3e+02 Score=24.54 Aligned_cols=32 Identities=31% Similarity=0.399 Sum_probs=20.4
Q ss_pred CCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEe
Q 043034 14 GKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCP 50 (197)
Q Consensus 14 G~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p 50 (197)
|+++|| |.++.|||.+++-. ++.+|++++++-
T Consensus 5 ~k~vlI--tGas~gIG~~ia~~---l~~~G~~vi~~~ 36 (248)
T TIGR01832 5 GKVALV--TGANTGLGQGIAVG---LAEAGADIVGAG 36 (248)
T ss_pred CCEEEE--ECCCchHHHHHHHH---HHHCCCEEEEEc
Confidence 455455 55555666655444 448999998873
No 282
>PRK12860 transcriptional activator FlhC; Provisional
Probab=26.72 E-value=1.3e+02 Score=25.98 Aligned_cols=74 Identities=9% Similarity=0.136 Sum_probs=42.4
Q ss_pred EcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccccccceecccccCCCCCCccc
Q 043034 82 QVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCS 156 (197)
Q Consensus 82 ~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~ 156 (197)
.++.-||+-.+.++.++.--.-+..--..+--|+.+++-.+.+--.+..|..=|-.|+. ..+-+.+..+||+|.
T Consensus 88 ~~~~ieAli~AYrlY~e~~~~~~~~~~Ls~tRAw~LvRf~~s~~L~l~~C~~Cgg~fv~-~~~e~~~~f~CplC~ 161 (189)
T PRK12860 88 RCSGLDALTKGYRLYLEHCCATGTEPVLDLTRAWTLVRFFDAGMLQLARCCRCGGKFVT-HAHDLRHNFVCGLCQ 161 (189)
T ss_pred CCCCHHHHHHHHHHHHHHhcccCCCceecHHHHHHHHHHhcCCCeeeccCCCCCCCeec-cccccCCCCcCCCCC
Confidence 57888999999999986421122222344455666666543221233333333444542 345667788899986
No 283
>COG4938 Uncharacterized conserved protein [Function unknown]
Probab=26.71 E-value=17 Score=33.98 Aligned_cols=76 Identities=18% Similarity=0.307 Sum_probs=44.6
Q ss_pred eeCCChHHHHHHHHHhhhHH---hhcCCcEEEE-ecccccCCCcceeccccccccccccccceeEEEcCcHHHHHHHHHH
Q 043034 20 EITSSNTGIGLAFISAVRIA---AVRGYKSYHC-PTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQL 95 (197)
Q Consensus 20 e~tsgntgi~lA~iaa~~~~---~~~Gyk~~~~-p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~VsDeEAi~aaR~L 95 (197)
|..--|.|.||+.+.-.-.| -.++|=+++= |+||+||.+.+.+..-- -.+..-|+--++.--.+-++..+|.+
T Consensus 235 ~~~~~NvgfGlsyvlPi~L~lli~K~~~lIIIEnPEAHLHP~gQs~lg~ll---A~~a~~gvqvVveTHSdhiiNglrl~ 311 (374)
T COG4938 235 EMDIRNVGFGLSYVLPIGLMLLIVKKKYLIIIENPEAHLHPEGQSKLGDLL---AELAARGVQVVVETHSDHIINGLRLI 311 (374)
T ss_pred EEEEeecCccHHHHHHHHHHeeeecCCcEEEEcCchhhcCchhHHHHHHHH---HHHHhcCcEEEEEechHHHhhhhhhh
Confidence 45567888888888761111 0223322222 99999998876542100 00112235667777788888888877
Q ss_pred HHH
Q 043034 96 AHK 98 (197)
Q Consensus 96 Ar~ 98 (197)
.++
T Consensus 312 ~l~ 314 (374)
T COG4938 312 VLE 314 (374)
T ss_pred eec
Confidence 764
No 284
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=26.70 E-value=1.5e+02 Score=26.29 Aligned_cols=37 Identities=19% Similarity=-0.037 Sum_probs=25.3
Q ss_pred HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+.+.++||++++|- -+|..|...+.+++ .+|.+++.+
T Consensus 174 ~~~~~~~g~~vlV~-G~G~vG~~av~~Ak-----~~G~~vi~~ 210 (357)
T PLN02514 174 HFGLKQSGLRGGIL-GLGGVGHMGVKIAK-----AMGHHVTVI 210 (357)
T ss_pred HcccCCCCCeEEEE-cccHHHHHHHHHHH-----HCCCeEEEE
Confidence 34667899986665 34656666566666 999987665
No 285
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=26.58 E-value=1.4e+02 Score=26.67 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=25.7
Q ss_pred CCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCC-cEEEE
Q 043034 9 GLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGY-KSYHC 49 (197)
Q Consensus 9 G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gy-k~~~~ 49 (197)
+.+++|++++|-+ .|..|..++.++. .+|. +++.+
T Consensus 199 ~~~~~g~~VlV~g-~g~vG~~ai~lA~-----~~G~~~vi~~ 234 (384)
T cd08265 199 GGFRPGAYVVVYG-AGPIGLAAIALAK-----AAGASKVIAF 234 (384)
T ss_pred CCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCCEEEEE
Confidence 7899999977764 5766666666777 9998 56555
No 286
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=26.55 E-value=1.4e+02 Score=21.15 Aligned_cols=31 Identities=13% Similarity=0.343 Sum_probs=25.9
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
||.+ |+|.-+|+-..++++.-. ..|.+++-+
T Consensus 1 p~~~-vLDlGcG~G~~~~~l~~~-----~~~~~v~gv 31 (112)
T PF12847_consen 1 PGGR-VLDLGCGTGRLSIALARL-----FPGARVVGV 31 (112)
T ss_dssp TTCE-EEEETTTTSHHHHHHHHH-----HTTSEEEEE
T ss_pred CCCE-EEEEcCcCCHHHHHHHhc-----CCCCEEEEE
Confidence 7887 899999988888877776 688888877
No 287
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=26.50 E-value=2.2e+02 Score=19.66 Aligned_cols=40 Identities=10% Similarity=0.084 Sum_probs=31.6
Q ss_pred HHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 3 KDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 3 ~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+.|.+ .+++|+.+.|-++...+--=+...|. ..||+++..
T Consensus 17 kkal~--~l~~G~~l~V~~d~~~a~~di~~~~~-----~~G~~~~~~ 56 (69)
T cd03420 17 KKEID--KLQDGEQLEVKASDPGFARDAQAWCK-----STGNTLISL 56 (69)
T ss_pred HHHHH--cCCCCCEEEEEECCccHHHHHHHHHH-----HcCCEEEEE
Confidence 34444 47899986788888888888999999 999999854
No 288
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=26.49 E-value=2e+02 Score=19.50 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=28.9
Q ss_pred HHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEE
Q 043034 2 IKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYH 48 (197)
Q Consensus 2 i~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~ 48 (197)
.+.|. .+.+|+.+.|..+..-+-.-+...|. ..||++..
T Consensus 16 ~k~al---~~~~g~~l~v~~d~~~s~~~i~~~~~-----~~G~~~~~ 54 (67)
T cd03421 16 TKKAL---ELEAGGEIEVLVDNEVAKENVSRFAE-----SRGYEVSV 54 (67)
T ss_pred HHHHH---hcCCCCEEEEEEcChhHHHHHHHHHH-----HcCCEEEE
Confidence 34555 57889876677776666678888888 99999954
No 289
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=26.45 E-value=1e+02 Score=26.85 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=34.6
Q ss_pred ccccccceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccccccceecccccCCC
Q 043034 71 LIQASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQS 150 (197)
Q Consensus 71 ~ieGiGIDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d~~~s~~~~~~~~~~ 150 (197)
.++|+| -.-|..++..|.++. .+-+-.++-|+.-|++.- ...-++ +.+-.+.
T Consensus 16 kLPGvG--------~KsA~R~AfhLL~~~-----~~~~~~la~al~~a~~~i--~~C~~C-------------~~~te~d 67 (198)
T COG0353 16 KLPGVG--------PKSAQRLAFHLLQRD-----REDVERLAKALLEAKENI--KHCSVC-------------GNLTESD 67 (198)
T ss_pred hCCCCC--------hhHHHHHHHHHHccC-----HHHHHHHHHHHHHHHhcC--cccccc-------------CCcCCCC
Confidence 456666 445666666666543 344566766766665421 122223 5677888
Q ss_pred CCCccc
Q 043034 151 PCPFCS 156 (197)
Q Consensus 151 ~~~~~~ 156 (197)
||.+|+
T Consensus 68 ~C~ICs 73 (198)
T COG0353 68 PCDICS 73 (198)
T ss_pred cCcCcC
Confidence 999998
No 290
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=26.39 E-value=1.8e+02 Score=25.71 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=27.3
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCc-EEEE
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK-SYHC 49 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk-~~~~ 49 (197)
.+.+.++||++++|-+ +|..|..++.++. .+|.+ ++.+
T Consensus 179 ~~~~~~~~g~~vlI~g-~g~vG~~~~~la~-----~~G~~~v~~~ 217 (365)
T cd08278 179 LNVLKPRPGSSIAVFG-AGAVGLAAVMAAK-----IAGCTTIIAV 217 (365)
T ss_pred hhhcCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCCeEEEE
Confidence 3567889999977764 5766776666777 99996 5544
No 291
>PRK12742 oxidoreductase; Provisional
Probab=26.29 E-value=1.3e+02 Score=24.20 Aligned_cols=31 Identities=26% Similarity=0.445 Sum_probs=20.3
Q ss_pred CCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 14 GKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 14 G~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
|+++|| |.|+.|||.+++-. ++..|++++++
T Consensus 6 ~k~vlI--tGasggIG~~~a~~---l~~~G~~v~~~ 36 (237)
T PRK12742 6 GKKVLV--LGGSRGIGAAIVRR---FVTDGANVRFT 36 (237)
T ss_pred CCEEEE--ECCCChHHHHHHHH---HHHCCCEEEEe
Confidence 556455 66666666666544 34889998775
No 292
>PRK08643 acetoin reductase; Validated
Probab=26.14 E-value=1.2e+02 Score=24.78 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=19.5
Q ss_pred CEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 15 KSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 15 ~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+++|| |.|+.|||.+++-. ++.+|++++++
T Consensus 3 k~~lI--tGas~giG~~la~~---l~~~G~~v~~~ 32 (256)
T PRK08643 3 KVALV--TGAGQGIGFAIAKR---LVEDGFKVAIV 32 (256)
T ss_pred CEEEE--ECCCChHHHHHHHH---HHHCCCEEEEE
Confidence 44455 56666666665544 34889999887
No 293
>PRK07035 short chain dehydrogenase; Provisional
Probab=26.11 E-value=1.3e+02 Score=24.53 Aligned_cols=32 Identities=31% Similarity=0.396 Sum_probs=21.3
Q ss_pred CCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEe
Q 043034 14 GKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCP 50 (197)
Q Consensus 14 G~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p 50 (197)
+.+++| |.|+.|||.+++-. ++.+|++++++-
T Consensus 8 ~k~vlI--tGas~gIG~~l~~~---l~~~G~~Vi~~~ 39 (252)
T PRK07035 8 GKIALV--TGASRGIGEAIAKL---LAQQGAHVIVSS 39 (252)
T ss_pred CCEEEE--ECCCcHHHHHHHHH---HHHCCCEEEEEe
Confidence 345466 66666777666544 347899998883
No 294
>PRK09072 short chain dehydrogenase; Provisional
Probab=26.10 E-value=1.3e+02 Score=24.91 Aligned_cols=32 Identities=31% Similarity=0.436 Sum_probs=19.6
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+|++++| |.|+.|||.+++-. ++.+|++++++
T Consensus 4 ~~~~vlI--tG~s~~iG~~ia~~---l~~~G~~V~~~ 35 (263)
T PRK09072 4 KDKRVLL--TGASGGIGQALAEA---LAAAGARLLLV 35 (263)
T ss_pred CCCEEEE--ECCCchHHHHHHHH---HHHCCCEEEEE
Confidence 3455466 44455566555433 33899999887
No 295
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=25.95 E-value=51 Score=23.43 Aligned_cols=20 Identities=30% Similarity=0.624 Sum_probs=15.7
Q ss_pred HHHHHHcCCCCCCCEEEEeeC
Q 043034 2 IKDAEDKGLITPGKSILIEIT 22 (197)
Q Consensus 2 i~~ae~~G~i~pG~t~Iie~t 22 (197)
+.++.++|+|+||+. ++=.+
T Consensus 57 L~~~~~~g~~~~Gd~-vl~~~ 76 (90)
T PF08541_consen 57 LADALEEGRIKPGDR-VLLVG 76 (90)
T ss_dssp HHHHHHTTSSCTTEE-EEEEE
T ss_pred HHHHHHcCCCCCCCE-EEEEE
Confidence 568999999999998 44443
No 296
>PRK07774 short chain dehydrogenase; Provisional
Probab=25.76 E-value=1.4e+02 Score=24.27 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=19.2
Q ss_pred CCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 14 GKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 14 G~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
|+++||=..|| |||.+++-. ++.+|++++++
T Consensus 6 ~k~vlItGasg--~iG~~la~~---l~~~g~~vi~~ 36 (250)
T PRK07774 6 DKVAIVTGAAG--GIGQAYAEA---LAREGASVVVA 36 (250)
T ss_pred CCEEEEECCCc--hHHHHHHHH---HHHCCCEEEEE
Confidence 45556654445 555555433 33899999988
No 297
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=25.71 E-value=1.3e+02 Score=24.69 Aligned_cols=31 Identities=29% Similarity=0.389 Sum_probs=19.0
Q ss_pred CCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 14 GKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 14 G~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
++++|| |.|+.|||.+++-. ++.+|++++++
T Consensus 6 ~~~vlI--tGas~~iG~~ia~~---l~~~G~~v~~~ 36 (257)
T PRK07067 6 GKVALL--TGAASGIGEAVAER---YLAEGARVVIA 36 (257)
T ss_pred CCEEEE--eCCCchHHHHHHHH---HHHcCCEEEEE
Confidence 445566 44555555554433 33899999887
No 298
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=25.64 E-value=79 Score=28.59 Aligned_cols=29 Identities=34% Similarity=0.634 Sum_probs=21.2
Q ss_pred CCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEE
Q 043034 11 ITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSY 47 (197)
Q Consensus 11 i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~ 47 (197)
.+||++ |++..+| ||| ||++|+ .+|-+-+
T Consensus 159 ~~~g~~-vLDvG~G-SGI-LaiaA~-----klGA~~v 187 (295)
T PF06325_consen 159 VKPGKR-VLDVGCG-SGI-LAIAAA-----KLGAKKV 187 (295)
T ss_dssp SSTTSE-EEEES-T-TSH-HHHHHH-----HTTBSEE
T ss_pred ccCCCE-EEEeCCc-HHH-HHHHHH-----HcCCCeE
Confidence 678888 9999988 455 777788 8888633
No 299
>PRK06138 short chain dehydrogenase; Provisional
Probab=25.62 E-value=1.3e+02 Score=24.35 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=19.5
Q ss_pred CCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 14 GKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 14 G~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
|++++|=..||-.|..||-..+ .+|++++++
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~-----~~G~~v~~~ 35 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFA-----REGARVVVA 35 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHH-----HCCCeEEEe
Confidence 4455775555555555554455 889998887
No 300
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=25.62 E-value=1.4e+02 Score=25.96 Aligned_cols=35 Identities=11% Similarity=0.059 Sum_probs=25.5
Q ss_pred CCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhc-CC-cEEEE
Q 043034 10 LITPGKSILIEITSSNTGIGLAFISAVRIAAVR-GY-KSYHC 49 (197)
Q Consensus 10 ~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~-Gy-k~~~~ 49 (197)
.+++|++++|-..+|..|.++..+++ .+ |. +++.+
T Consensus 148 ~~~~g~~vlI~ga~~~vg~~~~~~a~-----~~~~~~~v~~~ 184 (352)
T cd08247 148 KLGPDSKVLVLGGSTSVGRFAIQLAK-----NHYNIGTVVGT 184 (352)
T ss_pred ccCCCCeEEEECCCchHHHHHHHHHH-----hcCCcceEEEE
Confidence 68999998787777777777777777 76 44 44443
No 301
>PRK11018 hypothetical protein; Provisional
Probab=25.60 E-value=2.2e+02 Score=20.34 Aligned_cols=36 Identities=8% Similarity=0.125 Sum_probs=30.7
Q ss_pred CCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 9 GLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 9 G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
-.+++|+.+.|..+-..+-.-+...|. ..||+++-.
T Consensus 30 ~~l~~G~~L~V~~d~~~a~~di~~~~~-----~~G~~v~~~ 65 (78)
T PRK11018 30 PQLKKGEILEVVSDCPQSINNIPLDAR-----NHGYTVLDI 65 (78)
T ss_pred HhCCCCCEEEEEeCCccHHHHHHHHHH-----HcCCEEEEE
Confidence 358899986788888888899999999 999999754
No 302
>PRK06172 short chain dehydrogenase; Provisional
Probab=25.54 E-value=1.3e+02 Score=24.52 Aligned_cols=31 Identities=26% Similarity=0.221 Sum_probs=19.0
Q ss_pred CCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 14 GKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 14 G~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
|++++|=..||..|..+|...+ ..|++++++
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~-----~~G~~v~~~ 37 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFA-----REGAKVVVA 37 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHH-----HcCCEEEEE
Confidence 4555664445544444444444 889998887
No 303
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=25.38 E-value=29 Score=29.84 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHH--hCCeeeehhHHHH
Q 043034 86 EEAIETAQQLAHK--EGLLVGISSDAAA 111 (197)
Q Consensus 86 eEAi~aaR~LAr~--EGI~VG~SSGAaL 111 (197)
++..+.++.+.+. .+|++|+|.|..-
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS~gvt~ 38 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGSLGIVE 38 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCCCCH
Confidence 4444455555555 8999999976643
No 304
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=25.21 E-value=1.4e+02 Score=24.30 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=20.3
Q ss_pred CCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 14 GKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 14 G~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
|++++| |.++.|||.+++-. ++.+|++++++
T Consensus 7 ~~~vlI--tGasg~iG~~la~~---l~~~G~~v~~~ 37 (262)
T PRK13394 7 GKTAVV--TGAASGIGKEIALE---LARAGAAVAIA 37 (262)
T ss_pred CCEEEE--ECCCChHHHHHHHH---HHHCCCeEEEE
Confidence 556465 55555666665544 34899998877
No 305
>PRK05717 oxidoreductase; Validated
Probab=25.00 E-value=1.4e+02 Score=24.59 Aligned_cols=32 Identities=25% Similarity=0.457 Sum_probs=20.7
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.|+++|| |.|+.|||.+++-. ++.+|++++++
T Consensus 9 ~~k~vlI--tG~sg~IG~~~a~~---l~~~g~~v~~~ 40 (255)
T PRK05717 9 NGRVALV--TGAARGIGLGIAAW---LIAEGWQVVLA 40 (255)
T ss_pred CCCEEEE--eCCcchHHHHHHHH---HHHcCCEEEEE
Confidence 3566455 55556666655533 44889999887
No 306
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=24.92 E-value=1.4e+02 Score=24.38 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=20.5
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+|++++| |.|+.|||.+++-. ++.+|++++++
T Consensus 10 ~~k~ilI--tGas~~IG~~la~~---l~~~G~~v~~~ 41 (256)
T PRK06124 10 AGQVALV--TGSARGLGFEIARA---LAGAGAHVLVN 41 (256)
T ss_pred CCCEEEE--ECCCchHHHHHHHH---HHHcCCeEEEE
Confidence 4566465 55556666655544 23789999888
No 307
>PRK06841 short chain dehydrogenase; Provisional
Probab=24.58 E-value=1.5e+02 Score=24.24 Aligned_cols=32 Identities=28% Similarity=0.398 Sum_probs=20.3
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+|++++| |.++.|||.+++-. ++.+|++++++
T Consensus 14 ~~k~vlI--tGas~~IG~~la~~---l~~~G~~Vi~~ 45 (255)
T PRK06841 14 SGKVAVV--TGGASGIGHAIAEL---FAAKGARVALL 45 (255)
T ss_pred CCCEEEE--ECCCChHHHHHHHH---HHHCCCEEEEE
Confidence 3556455 55555666665544 34899998877
No 308
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=24.36 E-value=81 Score=26.97 Aligned_cols=25 Identities=8% Similarity=-0.049 Sum_probs=20.0
Q ss_pred eeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 20 EITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 20 e~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
-.+||-.|.++|-..+ .+|++++++
T Consensus 21 N~SSGgIG~AIA~~la-----~~Ga~Vvlv 45 (227)
T TIGR02114 21 NHSTGHLGKIITETFL-----SAGHEVTLV 45 (227)
T ss_pred CCcccHHHHHHHHHHH-----HCCCEEEEE
Confidence 3467777777777777 999999987
No 309
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=24.21 E-value=1.4e+02 Score=24.02 Aligned_cols=32 Identities=28% Similarity=0.381 Sum_probs=19.7
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.+++++| |.|+.++|.+++-. ++.+|++++++
T Consensus 5 ~~~~ilI--tGasg~iG~~l~~~---l~~~g~~V~~~ 36 (251)
T PRK12826 5 EGRVALV--TGAARGIGRAIAVR---LAADGAEVIVV 36 (251)
T ss_pred CCCEEEE--cCCCCcHHHHHHHH---HHHCCCEEEEE
Confidence 3556565 55555555555444 23789998887
No 310
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=24.15 E-value=1.5e+02 Score=21.31 Aligned_cols=67 Identities=21% Similarity=0.313 Sum_probs=37.3
Q ss_pred cHHHHHHHHHHHHHhCCeeeeh---hHHHHHHHHHHhcCCCCCCceEEEe-eccc---ccccceecccccCCCCCC
Q 043034 85 SEEAIETAQQLAHKEGLLVGIS---SDAAAAASIKVAKIPENDRILIVVS-LISY---KLYFSFCINSLVNQSPCP 153 (197)
Q Consensus 85 DeEAi~aaR~LAr~EGI~VG~S---SGAaLAAAlklA~~~~~~g~~VVt~-~~~~---d~~~s~~~~~~~~~~~~~ 153 (197)
.++.++.++.++++.|+-+... +|....+..+.+++.. -.-||+- .++. ++.+.-..+.++..+|||
T Consensus 54 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~--~dlIV~G~~~~~~~~~~~lGs~~~~v~~~~~~p 127 (132)
T cd01988 54 ARKLLRQAERIAASLGVPVHTIIRIDHDIASGILRTAKERQ--ADLIIMGWHGSTSLRDRLFGGVIDQVLESAPCD 127 (132)
T ss_pred HHHHHHHHHHHhhhcCCceEEEEEecCCHHHHHHHHHHhcC--CCEEEEecCCCCCccceecCchHHHHHhcCCCC
Confidence 4566677777777778765533 3434445566666532 2234441 1111 333555666788888888
No 311
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=24.15 E-value=4.9e+02 Score=24.29 Aligned_cols=94 Identities=15% Similarity=0.180 Sum_probs=58.0
Q ss_pred HHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEcC
Q 043034 5 AEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVS 84 (197)
Q Consensus 5 ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~Vs 84 (197)
|.++-.++||+. |.=.--|-.|.--..+++ ++|.+++.+-...- ..-..+-+|-|.++.-+
T Consensus 158 alk~~~~~pG~~-V~I~G~GGlGh~avQ~Ak-----a~ga~Via~~~~~~-------------K~e~a~~lGAd~~i~~~ 218 (339)
T COG1064 158 ALKKANVKPGKW-VAVVGAGGLGHMAVQYAK-----AMGAEVIAITRSEE-------------KLELAKKLGADHVINSS 218 (339)
T ss_pred ehhhcCCCCCCE-EEEECCcHHHHHHHHHHH-----HcCCeEEEEeCChH-------------HHHHHHHhCCcEEEEcC
Confidence 567788999998 554445533333334444 89999998732211 11123456678888777
Q ss_pred cHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcC
Q 043034 85 SEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKI 120 (197)
Q Consensus 85 DeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~ 120 (197)
|++..+..+.. -..++.=-+ ...+-.+++.+++
T Consensus 219 ~~~~~~~~~~~--~d~ii~tv~-~~~~~~~l~~l~~ 251 (339)
T COG1064 219 DSDALEAVKEI--ADAIIDTVG-PATLEPSLKALRR 251 (339)
T ss_pred CchhhHHhHhh--CcEEEECCC-hhhHHHHHHHHhc
Confidence 77777777775 234444333 7777777777764
No 312
>PRK07814 short chain dehydrogenase; Provisional
Probab=24.14 E-value=1.5e+02 Score=24.70 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=21.7
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEe
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCP 50 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p 50 (197)
+|+++|| |.|+.|||.+++-. ++.+|++++++-
T Consensus 9 ~~~~vlI--tGasggIG~~~a~~---l~~~G~~Vi~~~ 41 (263)
T PRK07814 9 DDQVAVV--TGAGRGLGAAIALA---FAEAGADVLIAA 41 (263)
T ss_pred CCCEEEE--ECCCChHHHHHHHH---HHHCCCEEEEEe
Confidence 4566455 55666677766544 348999998873
No 313
>PF06221 zf-C2HC5: Putative zinc finger motif, C2HC5-type; InterPro: IPR009349 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This zinc finger appears to be common in activating signal cointegrator 1/thyroid receptor interacting protein 4. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.04 E-value=36 Score=23.98 Aligned_cols=8 Identities=63% Similarity=1.846 Sum_probs=7.2
Q ss_pred CCCCCccc
Q 043034 149 QSPCPFCS 156 (197)
Q Consensus 149 ~~~~~~~~ 156 (197)
..|||||.
T Consensus 35 ~~pC~fCg 42 (57)
T PF06221_consen 35 LGPCPFCG 42 (57)
T ss_pred cCcCCCCC
Confidence 58999997
No 314
>PRK08339 short chain dehydrogenase; Provisional
Probab=24.02 E-value=1.4e+02 Score=25.02 Aligned_cols=32 Identities=28% Similarity=0.343 Sum_probs=23.4
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.|+++|| |.|+.|||.|++-. ++..|++++++
T Consensus 7 ~~k~~lI--tGas~gIG~aia~~---l~~~G~~V~~~ 38 (263)
T PRK08339 7 SGKLAFT--TASSKGIGFGVARV---LARAGADVILL 38 (263)
T ss_pred CCCEEEE--eCCCCcHHHHHHHH---HHHCCCEEEEE
Confidence 3566455 77777888887555 55899999887
No 315
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=24.02 E-value=2e+02 Score=19.47 Aligned_cols=35 Identities=11% Similarity=0.228 Sum_probs=27.5
Q ss_pred CCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 10 LITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 10 ~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.+.+|+.+.|-.+...+-.-+.-.|. ..||+++-+
T Consensus 23 ~l~~G~~l~v~~d~~~~~~di~~~~~-----~~g~~~~~~ 57 (70)
T PF01206_consen 23 ELPPGEVLEVLVDDPAAVEDIPRWCE-----ENGYEVVEV 57 (70)
T ss_dssp TSGTT-EEEEEESSTTHHHHHHHHHH-----HHTEEEEEE
T ss_pred hcCCCCEEEEEECCccHHHHHHHHHH-----HCCCEEEEE
Confidence 37899875577788888888999999 999997765
No 316
>PRK05867 short chain dehydrogenase; Provisional
Probab=23.96 E-value=1.5e+02 Score=24.32 Aligned_cols=31 Identities=35% Similarity=0.374 Sum_probs=22.2
Q ss_pred CCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 14 GKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 14 G~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
|+++|| |.|+.|||.+++-. ++.+|++++++
T Consensus 9 ~k~vlV--tGas~gIG~~ia~~---l~~~G~~V~~~ 39 (253)
T PRK05867 9 GKRALI--TGASTGIGKRVALA---YVEAGAQVAIA 39 (253)
T ss_pred CCEEEE--ECCCchHHHHHHHH---HHHCCCEEEEE
Confidence 555455 66677788777655 45889999887
No 317
>PRK05872 short chain dehydrogenase; Provisional
Probab=23.90 E-value=1.5e+02 Score=25.51 Aligned_cols=32 Identities=28% Similarity=0.430 Sum_probs=21.3
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+|+++|| |.|+.|||.+++-. ++.+|++++++
T Consensus 8 ~gk~vlI--tGas~gIG~~ia~~---l~~~G~~V~~~ 39 (296)
T PRK05872 8 AGKVVVV--TGAARGIGAELARR---LHARGAKLALV 39 (296)
T ss_pred CCCEEEE--ECCCchHHHHHHHH---HHHCCCEEEEE
Confidence 3556455 66666777666544 44899998877
No 318
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.88 E-value=1.6e+02 Score=23.75 Aligned_cols=32 Identities=31% Similarity=0.337 Sum_probs=19.8
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+|.+++| |.|+.|||.+++-. ++.+|++++++
T Consensus 4 ~~~~~lI--tG~~g~iG~~~a~~---l~~~G~~vi~~ 35 (253)
T PRK08217 4 KDKVIVI--TGGAQGLGRAMAEY---LAQKGAKLALI 35 (253)
T ss_pred CCCEEEE--ECCCchHHHHHHHH---HHHCCCEEEEE
Confidence 3555455 55556666665433 33789998887
No 319
>PRK07576 short chain dehydrogenase; Provisional
Probab=23.86 E-value=1.5e+02 Score=24.76 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=19.9
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
++.+++|=..||..|..+|-..+ .+|++++++
T Consensus 8 ~~k~ilItGasggIG~~la~~l~-----~~G~~V~~~ 39 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFA-----RAGANVAVA 39 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHH-----HCCCEEEEE
Confidence 45565665555544444444445 899999887
No 320
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=23.70 E-value=1.8e+02 Score=25.81 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=34.6
Q ss_pred CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhh-----cCCcEEEEe
Q 043034 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAV-----RGYKSYHCP 50 (197)
Q Consensus 1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~-----~Gyk~~~~p 50 (197)
+|.-.++.|+|.|... +||.-.|+-..+-.+.-+ . -.++++++-
T Consensus 6 li~~l~~~~ll~~~~~-~vEfGaGrg~LS~~v~~~-----~~~~~~~~~~~~lID 54 (259)
T PF05206_consen 6 LIGNLEQRGLLNPDSC-FVEFGAGRGELSRWVAQA-----LQEDKPSNSRFVLID 54 (259)
T ss_pred HHHHHHHcCCCCCCCE-EEEECCCchHHHHHHHHH-----hhhcccCCccEEEEe
Confidence 4677899999999987 999999998877655555 4 467778873
No 321
>PRK09242 tropinone reductase; Provisional
Probab=23.68 E-value=1.5e+02 Score=24.29 Aligned_cols=32 Identities=31% Similarity=0.391 Sum_probs=19.5
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.|++++| |.|+.|||.+++-. ++.+|++++++
T Consensus 8 ~~k~~lI--tGa~~gIG~~~a~~---l~~~G~~v~~~ 39 (257)
T PRK09242 8 DGQTALI--TGASKGIGLAIARE---FLGLGADVLIV 39 (257)
T ss_pred CCCEEEE--eCCCchHHHHHHHH---HHHcCCEEEEE
Confidence 3556466 44445555555443 33899998887
No 322
>PRK06198 short chain dehydrogenase; Provisional
Probab=23.63 E-value=1.5e+02 Score=24.29 Aligned_cols=31 Identities=29% Similarity=0.326 Sum_probs=20.7
Q ss_pred CCEEEEeeCCChHHHHHHHHHhhhHHhhcCCc-EEEE
Q 043034 14 GKSILIEITSSNTGIGLAFISAVRIAAVRGYK-SYHC 49 (197)
Q Consensus 14 G~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk-~~~~ 49 (197)
+++++|-..+|..|..+|...+ .+|++ ++++
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~-----~~G~~~V~~~ 37 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFA-----ERGAAGLVIC 37 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHH-----HCCCCeEEEE
Confidence 4455666666666666666666 89999 7666
No 323
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=23.53 E-value=1.4e+02 Score=28.76 Aligned_cols=33 Identities=30% Similarity=0.485 Sum_probs=25.9
Q ss_pred CEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 15 KSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 15 ~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
..++|=+-.||.| |=++++| |.++.+||++.++
T Consensus 60 ~~VlVlcG~GNNG-GDGlv~A-R~L~~~G~~V~v~ 92 (462)
T PLN03049 60 RRVLALCGPGNNG-GDGLVAA-RHLHHFGYKPSIC 92 (462)
T ss_pred CEEEEEECCCCCH-HHHHHHH-HHHHHCCCceEEE
Confidence 3457888888887 5566666 7788999999988
No 324
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=23.51 E-value=1.9e+02 Score=24.22 Aligned_cols=91 Identities=14% Similarity=0.086 Sum_probs=49.1
Q ss_pred CCCC-CCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEcCcHHH
Q 043034 10 LITP-GKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSEEA 88 (197)
Q Consensus 10 ~i~p-G~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~VsDeEA 88 (197)
.+.+ |++++|-..+|..|..++.++. .+|.+++.+-. . ++. ...+..+|.|.++...+.+
T Consensus 142 ~~~~~~~~vlI~g~~g~vg~~~~~~a~-----~~g~~v~~~~~-~--~~~----------~~~~~~~g~~~~~~~~~~~- 202 (325)
T cd05280 142 GQTPEDGPVLVTGATGGVGSIAVAILA-----KLGYTVVALTG-K--EEQ----------ADYLKSLGASEVLDREDLL- 202 (325)
T ss_pred cCCCCCCEEEEECCccHHHHHHHHHHH-----HcCCEEEEEeC-C--HHH----------HHHHHhcCCcEEEcchhHH-
Confidence 3454 4566887778888888888888 99998655411 1 000 1112334555555433221
Q ss_pred HHHHHHHHH-HhCCeeeehhHHHHHHHHHHhc
Q 043034 89 IETAQQLAH-KEGLLVGISSDAAAAASIKVAK 119 (197)
Q Consensus 89 i~aaR~LAr-~EGI~VG~SSGAaLAAAlklA~ 119 (197)
.+..+.+.+ .-.+++..+++..+..+++..+
T Consensus 203 ~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~ 234 (325)
T cd05280 203 DESKKPLLKARWAGAIDTVGGDVLANLLKQTK 234 (325)
T ss_pred HHHHHHhcCCCccEEEECCchHHHHHHHHhhc
Confidence 112222221 1235667777766666666654
No 325
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=23.41 E-value=62 Score=21.31 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=14.1
Q ss_pred hhhHHhhcCCcEEEEec
Q 043034 35 AVRIAAVRGYKSYHCPT 51 (197)
Q Consensus 35 a~~~~~~~Gyk~~~~p~ 51 (197)
..|.+..+||+++.+|-
T Consensus 23 k~r~L~~~G~~Vi~Ip~ 39 (58)
T PF08373_consen 23 KHRHLKALGYKVISIPY 39 (58)
T ss_pred HHHHHHHCCCEEEEecH
Confidence 35888899999999974
No 326
>PRK06500 short chain dehydrogenase; Provisional
Probab=23.39 E-value=1.6e+02 Score=23.80 Aligned_cols=32 Identities=25% Similarity=0.194 Sum_probs=20.1
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+|++++|=..||..|..+|-..+ .+|++++++
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~-----~~g~~v~~~ 36 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFL-----AEGARVAIT 36 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHH-----HCCCEEEEe
Confidence 45565675555555555554455 899998877
No 327
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=23.19 E-value=1.6e+02 Score=24.45 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=22.0
Q ss_pred CCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEe
Q 043034 14 GKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCP 50 (197)
Q Consensus 14 G~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p 50 (197)
|++++| |.|+.|||.+++-. ++..|++++++.
T Consensus 5 ~k~vlI--tGas~gIG~~ia~~---l~~~G~~V~~~~ 36 (262)
T TIGR03325 5 GEVVLV--TGGASGLGRAIVDR---FVAEGARVAVLD 36 (262)
T ss_pred CcEEEE--ECCCChHHHHHHHH---HHHCCCEEEEEe
Confidence 455455 66677777776544 458999999873
No 328
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=23.02 E-value=1.4e+02 Score=29.64 Aligned_cols=33 Identities=30% Similarity=0.532 Sum_probs=26.2
Q ss_pred CEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 15 KSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 15 ~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
..++|=+-.||.| |=++++| |.++.+||++.++
T Consensus 136 ~~VlVlcGpGNNG-GDGLVaA-R~L~~~G~~V~V~ 168 (544)
T PLN02918 136 SRVLAICGPGNNG-GDGLVAA-RHLHHFGYKPFVC 168 (544)
T ss_pred CEEEEEECCCcCH-HHHHHHH-HHHHHCCCceEEE
Confidence 3468888899887 5566666 7788999999988
No 329
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=22.92 E-value=1.6e+02 Score=29.61 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=30.3
Q ss_pred HHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHh-hhHHhhcCCcEEEE
Q 043034 3 KDAEDKGLITPGKSILIEITSSNTGIGLAFISA-VRIAAVRGYKSYHC 49 (197)
Q Consensus 3 ~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa-~~~~~~~Gyk~~~~ 49 (197)
.+|...+...++...+|||-+| ||-.||++-. +..|...|-|+++-
T Consensus 38 ~~al~~~~~~~~~~lviEAgTG-tGKTlaYLlPai~~A~~~~k~vVIS 84 (697)
T PRK11747 38 AKTLAGEYLKDGRILVIEAGTG-VGKTLSYLLAGIPIARAEKKKLVIS 84 (697)
T ss_pred HHHHhcccccccceEEEECCCC-cchhHHHHHHHHHHHHHcCCeEEEE
Confidence 3444443333345558999998 8999998765 34444578887775
No 330
>PRK07890 short chain dehydrogenase; Provisional
Probab=22.91 E-value=1.7e+02 Score=23.88 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=20.6
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
++++++| |.|+.|||.+++-. ++.+|++++++
T Consensus 4 ~~k~vlI--tGa~~~IG~~la~~---l~~~G~~V~~~ 35 (258)
T PRK07890 4 KGKVVVV--SGVGPGLGRTLAVR---AARAGADVVLA 35 (258)
T ss_pred CCCEEEE--ECCCCcHHHHHHHH---HHHcCCEEEEE
Confidence 4556455 55555666655444 44899999887
No 331
>PRK12829 short chain dehydrogenase; Provisional
Probab=22.84 E-value=1.6e+02 Score=24.04 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=20.4
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
++++++|=..+|..|..+|-... .+|++++++
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~-----~~g~~V~~~ 41 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFA-----EAGARVHVC 41 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHH-----HCCCEEEEE
Confidence 55665765555555555554455 899998877
No 332
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=22.78 E-value=2.1e+02 Score=24.24 Aligned_cols=38 Identities=18% Similarity=0.097 Sum_probs=28.5
Q ss_pred HcCCCCC-----CCEEEEeeCCChHHHHHHHHHhhhHHhhcC-CcEEEE
Q 043034 7 DKGLITP-----GKSILIEITSSNTGIGLAFISAVRIAAVRG-YKSYHC 49 (197)
Q Consensus 7 ~~G~i~p-----G~t~Iie~tsgntgi~lA~iaa~~~~~~~G-yk~~~~ 49 (197)
+...+.+ |++++|-..+|..|-.++.++. .+| .+++.+
T Consensus 138 ~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~-----~~G~~~v~~~ 181 (336)
T cd08252 138 DRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAK-----QLTGLTVIAT 181 (336)
T ss_pred HhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHH-----HcCCcEEEEE
Confidence 4556666 8887777667777777777777 999 888776
No 333
>PRK08862 short chain dehydrogenase; Provisional
Probab=22.77 E-value=1.6e+02 Score=24.53 Aligned_cols=32 Identities=28% Similarity=0.293 Sum_probs=21.2
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+|+++|| |.|+.|||.|..-. .+.+|++++++
T Consensus 4 ~~k~~lV--tGas~GIG~aia~~---la~~G~~V~~~ 35 (227)
T PRK08862 4 KSSIILI--TSAGSVLGRTISCH---FARLGATLILC 35 (227)
T ss_pred CCeEEEE--ECCccHHHHHHHHH---HHHCCCEEEEE
Confidence 3555444 66666777766544 44899998887
No 334
>PRK07677 short chain dehydrogenase; Provisional
Probab=22.71 E-value=1.6e+02 Score=24.24 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=18.9
Q ss_pred CEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 15 KSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 15 ~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+++|| |.|+.|||.+++-. ++.+|++++++
T Consensus 2 k~~lI--tG~s~giG~~ia~~---l~~~G~~Vi~~ 31 (252)
T PRK07677 2 KVVII--TGGSSGMGKAMAKR---FAEEGANVVIT 31 (252)
T ss_pred CEEEE--eCCCChHHHHHHHH---HHHCCCEEEEE
Confidence 44444 55555666665544 33899998887
No 335
>PRK12939 short chain dehydrogenase; Provisional
Probab=22.66 E-value=1.7e+02 Score=23.55 Aligned_cols=31 Identities=35% Similarity=0.469 Sum_probs=18.5
Q ss_pred CCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 14 GKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 14 G~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+++++| |.++.|||.+++-. ++.+|++++++
T Consensus 7 ~~~vlI--tGa~g~iG~~la~~---l~~~G~~v~~~ 37 (250)
T PRK12939 7 GKRALV--TGAARGLGAAFAEA---LAEAGATVAFN 37 (250)
T ss_pred CCEEEE--eCCCChHHHHHHHH---HHHcCCEEEEE
Confidence 556455 54445555554333 23899998887
No 336
>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses.; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process
Probab=22.61 E-value=16 Score=26.91 Aligned_cols=28 Identities=25% Similarity=0.643 Sum_probs=16.9
Q ss_pred cCCCCCCccccccc---cceeeeccCCcccc
Q 043034 147 VNQSPCPFCSLHEA---CHQFLLPSGGERYL 174 (197)
Q Consensus 147 ~~~~~~~~~~~~~~---~~~~i~~d~g~rYl 174 (197)
+..-|||.|+.|.. =..-|..+..-.|.
T Consensus 13 ~~tLPC~~Cr~HA~~ai~kNNiMSs~DiNyI 43 (70)
T PF04805_consen 13 CSTLPCPECRIHAKEAIQKNNIMSSNDINYI 43 (70)
T ss_pred HhcCCCHHHHHHHHHHHHhcCccccCCccch
Confidence 45689999999842 23334444444444
No 337
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=22.49 E-value=2.2e+02 Score=25.31 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=20.1
Q ss_pred CCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 22 TSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 22 tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
-+|-.|..++..++ .+||+++++
T Consensus 6 G~g~~~~~l~~aa~-----~~G~~v~~~ 28 (380)
T TIGR01142 6 GSGELGKEVAIEAQ-----RLGVEVIAV 28 (380)
T ss_pred CCCHHHHHHHHHHH-----HcCCEEEEE
Confidence 46888899988888 999999998
No 338
>PRK09134 short chain dehydrogenase; Provisional
Probab=22.36 E-value=1.8e+02 Score=24.01 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=18.9
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.+++++| |.++.|||.+++-. .+.+|++++++
T Consensus 8 ~~k~vlI--tGas~giG~~la~~---l~~~g~~v~~~ 39 (258)
T PRK09134 8 APRAALV--TGAARRIGRAIALD---LAAHGFDVAVH 39 (258)
T ss_pred CCCEEEE--eCCCcHHHHHHHHH---HHHCCCEEEEE
Confidence 3555566 44445555544433 23899999876
No 339
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=22.11 E-value=1.9e+02 Score=28.38 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=27.5
Q ss_pred CCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEe
Q 043034 14 GKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCP 50 (197)
Q Consensus 14 G~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p 50 (197)
|+. |+-.-+|-.|++.|+..+ .+||+++++.
T Consensus 310 ~kk-VaIIG~GpaGl~aA~~L~-----~~G~~Vtv~e 340 (639)
T PRK12809 310 SEK-VAVIGAGPAGLGCADILA-----RAGVQVDVFD 340 (639)
T ss_pred CCE-EEEECcCHHHHHHHHHHH-----HcCCcEEEEe
Confidence 777 777899999999999999 9999999983
No 340
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=22.07 E-value=2.2e+02 Score=23.86 Aligned_cols=30 Identities=20% Similarity=0.459 Sum_probs=23.4
Q ss_pred HHcCCCCCCCEEEEeeCCChHHHHHHHHHh
Q 043034 6 EDKGLITPGKSILIEITSSNTGIGLAFISA 35 (197)
Q Consensus 6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa 35 (197)
.+.+.+++|++++|-..+|..|..++.+++
T Consensus 131 ~~~~~~~~~~~vli~g~~g~~g~~~~~~a~ 160 (337)
T cd08275 131 FELGNLRPGQSVLVHSAAGGVGLAAGQLCK 160 (337)
T ss_pred HHhhCCCCCCEEEEEcCcchHHHHHHHHHH
Confidence 456889999997776667777777777777
No 341
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=22.06 E-value=97 Score=25.42 Aligned_cols=24 Identities=33% Similarity=0.318 Sum_probs=19.9
Q ss_pred eccCCccccCcccCchhHHHHhhcc
Q 043034 166 LPSGGERYLSTELFDSITHEAETCL 190 (197)
Q Consensus 166 ~~d~g~rYlst~~~~~~~~~~~~~~ 190 (197)
+|++ .+|+|+.||-+.++|+++..
T Consensus 22 Lcrs-y~Yls~GYY~SLLAEARgh~ 45 (153)
T PF14401_consen 22 LCRS-YRYLSEGYYCSLLAEARGHR 45 (153)
T ss_pred ecCC-ccccCcceeeeHHHHHcCCC
Confidence 4554 89999999999999998753
No 342
>PF14001 YdfZ: YdfZ protein
Probab=21.97 E-value=54 Score=23.83 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=21.1
Q ss_pred cCCCCCCCEEEEeeCCChHHHHHHHHH
Q 043034 8 KGLITPGKSILIEITSSNTGIGLAFIS 34 (197)
Q Consensus 8 ~G~i~pG~t~Iie~tsgntgi~lA~ia 34 (197)
+..|++|.. |..+.||.||.--|.-+
T Consensus 7 RN~i~~G~r-VMiagtG~~gvikAih~ 32 (64)
T PF14001_consen 7 RNAITTGSR-VMIAGTGATGVIKAIHA 32 (64)
T ss_pred cCcCCCCCE-EEEcCCCcccEEeeeec
Confidence 567999998 99999999997655443
No 343
>PRK07063 short chain dehydrogenase; Provisional
Probab=21.80 E-value=1.8e+02 Score=24.00 Aligned_cols=31 Identities=35% Similarity=0.404 Sum_probs=22.0
Q ss_pred CCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 14 GKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 14 G~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
|+++|| |.|+.|||.+++-. ++.+|++++++
T Consensus 7 ~k~vlV--tGas~gIG~~~a~~---l~~~G~~vv~~ 37 (260)
T PRK07063 7 GKVALV--TGAAQGIGAAIARA---FAREGAAVALA 37 (260)
T ss_pred CCEEEE--ECCCchHHHHHHHH---HHHCCCEEEEE
Confidence 455455 67777888777655 55899998887
No 344
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.78 E-value=1.8e+02 Score=23.62 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=18.5
Q ss_pred CEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 15 KSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 15 ~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+++|| |.|+.|||.+++-. ++..|++++++
T Consensus 6 k~ilI--tGas~gIG~~la~~---l~~~G~~vv~~ 35 (253)
T PRK08642 6 QTVLV--TGGSRGLGAAIARA---FAREGARVVVN 35 (253)
T ss_pred CEEEE--eCCCCcHHHHHHHH---HHHCCCeEEEE
Confidence 45466 55555666555433 33889999875
No 345
>PRK06057 short chain dehydrogenase; Provisional
Probab=21.76 E-value=1.8e+02 Score=23.95 Aligned_cols=32 Identities=31% Similarity=0.404 Sum_probs=21.8
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+|++++| |.++.|||.+++-. ++.+|++++++
T Consensus 6 ~~~~vlI--tGasggIG~~~a~~---l~~~G~~v~~~ 37 (255)
T PRK06057 6 AGRVAVI--TGGGSGIGLATARR---LAAEGATVVVG 37 (255)
T ss_pred CCCEEEE--ECCCchHHHHHHHH---HHHcCCEEEEE
Confidence 3556565 66666777776644 44889999887
No 346
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=21.72 E-value=1.8e+02 Score=23.90 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=22.0
Q ss_pred CCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEe
Q 043034 14 GKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCP 50 (197)
Q Consensus 14 G~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p 50 (197)
++++|| |.|+.|||.+++-. ++.+|++++++-
T Consensus 8 ~k~vlV--tGas~gIG~~la~~---l~~~G~~v~~~~ 39 (260)
T PRK12823 8 GKVVVV--TGAAQGIGRGVALR---AAAEGARVVLVD 39 (260)
T ss_pred CCEEEE--eCCCchHHHHHHHH---HHHCCCEEEEEe
Confidence 455455 66777777776644 448999998873
No 347
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=21.69 E-value=90 Score=29.27 Aligned_cols=22 Identities=27% Similarity=0.234 Sum_probs=16.7
Q ss_pred CChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 23 SSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 23 sgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
||.+|.++|.... .+|++++++
T Consensus 210 SG~~g~~~a~~~~-----~~Ga~V~~~ 231 (390)
T TIGR00521 210 SGKMGLALAEAAY-----KRGADVTLI 231 (390)
T ss_pred cchHHHHHHHHHH-----HCCCEEEEe
Confidence 4456666666677 999999987
No 348
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=21.55 E-value=1.2e+02 Score=30.08 Aligned_cols=27 Identities=37% Similarity=0.341 Sum_probs=25.0
Q ss_pred EEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 18 LIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 18 Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
||-+-.|-||.|+|.=|| .+||++.++
T Consensus 15 viVIGGGitG~GiArDaA-----~RGl~v~Lv 41 (532)
T COG0578 15 VIVIGGGITGAGIARDAA-----GRGLKVALV 41 (532)
T ss_pred EEEECCchhhHHHHHHHH-----hCCCeEEEE
Confidence 566789999999999999 999999999
No 349
>PRK07806 short chain dehydrogenase; Provisional
Probab=21.39 E-value=1.8e+02 Score=23.60 Aligned_cols=31 Identities=32% Similarity=0.343 Sum_probs=19.5
Q ss_pred CCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 14 GKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 14 G~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
|++++| |.++.|||.+++-. ++.+|++++++
T Consensus 6 ~k~vlI--tGasggiG~~l~~~---l~~~G~~V~~~ 36 (248)
T PRK07806 6 GKTALV--TGSSRGIGADTAKI---LAGAGAHVVVN 36 (248)
T ss_pred CcEEEE--ECCCCcHHHHHHHH---HHHCCCEEEEE
Confidence 445466 55555666666443 33789998876
No 350
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=21.34 E-value=1.6e+02 Score=24.82 Aligned_cols=28 Identities=21% Similarity=0.197 Sum_probs=24.1
Q ss_pred EeeCCChHHHHHHHHHhhhHHhhcCCcEEEEec
Q 043034 19 IEITSSNTGIGLAFISAVRIAAVRGYKSYHCPT 51 (197)
Q Consensus 19 ie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~ 51 (197)
|=.-+|-.|.++|+-.+ .+|++++++-.
T Consensus 3 vIIGaGi~G~~~A~~La-----~~G~~V~l~e~ 30 (358)
T PF01266_consen 3 VIIGAGIAGLSTAYELA-----RRGHSVTLLER 30 (358)
T ss_dssp EEECTSHHHHHHHHHHH-----HTTSEEEEEES
T ss_pred EEECcCHHHHHHHHHHH-----HCCCeEEEEee
Confidence 34578999999999999 99999999843
No 351
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=21.27 E-value=37 Score=29.73 Aligned_cols=32 Identities=22% Similarity=0.239 Sum_probs=20.9
Q ss_pred HHHHHHHHHHH--hCCeeeehhHHHHHHHHHHhc
Q 043034 88 AIETAQQLAHK--EGLLVGISSDAAAAASIKVAK 119 (197)
Q Consensus 88 Ai~aaR~LAr~--EGI~VG~SSGAaLAAAlklA~ 119 (197)
+.+.++.+.+. .+|++|+|.|..--...++.+
T Consensus 16 ~~~~~~~~~~~gtdai~vGGS~~vt~~~~~~~v~ 49 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILIGGSQGVTYEKTDTLIE 49 (223)
T ss_pred cHHHHHHHHhcCCCEEEEcCCCcccHHHHHHHHH
Confidence 44455566655 889999999886554444433
No 352
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=21.27 E-value=4e+02 Score=25.59 Aligned_cols=80 Identities=16% Similarity=0.141 Sum_probs=44.1
Q ss_pred CCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEcCcHHHHH
Q 043034 11 ITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSEEAIE 90 (197)
Q Consensus 11 i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~VsDeEAi~ 90 (197)
+.||++ ||+.++.+---....... ++.+|..++=+|.. |++.|. -.| . -++.=-|+++++
T Consensus 79 l~~Gdi-iID~gn~~~~~t~~~~~~---l~~~Gi~fvdapVS-----------GG~~gA--~~G--~-siM~GG~~~a~~ 138 (459)
T PRK09287 79 LEKGDI-IIDGGNSNYKDTIRREKE---LAEKGIHFIGMGVS-----------GGEEGA--LHG--P-SIMPGGQKEAYE 138 (459)
T ss_pred CCCCCE-EEECCCCCHHHHHHHHHH---HHhcCCeEEecCCC-----------CCHHHH--hcC--C-EEEEeCCHHHHH
Confidence 689997 999987654444333322 33889888876532 222110 001 1 222224677777
Q ss_pred HHHHHHHH------hC----CeeeehhHHH
Q 043034 91 TAQQLAHK------EG----LLVGISSDAA 110 (197)
Q Consensus 91 aaR~LAr~------EG----I~VG~SSGAa 110 (197)
.++-+.+. .| .++|+.+.+.
T Consensus 139 ~~~piL~~ia~~~~~g~~c~~~vG~~GaGh 168 (459)
T PRK09287 139 LVAPILEKIAAKVEDGEPCVTYIGPDGAGH 168 (459)
T ss_pred HHHHHHHHHhhhhcCCCCceeeeCCCCHHH
Confidence 77765544 33 6778765543
No 353
>PRK12743 oxidoreductase; Provisional
Probab=21.20 E-value=1.8e+02 Score=24.05 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=19.2
Q ss_pred EEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 16 SILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 16 t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
++|| |.|+.|||.+++-. ++.+|++++++
T Consensus 4 ~vlI--tGas~giG~~~a~~---l~~~G~~V~~~ 32 (256)
T PRK12743 4 VAIV--TASDSGIGKACALL---LAQQGFDIGIT 32 (256)
T ss_pred EEEE--ECCCchHHHHHHHH---HHHCCCEEEEE
Confidence 4455 55666666665544 44899999887
No 354
>PRK06197 short chain dehydrogenase; Provisional
Probab=21.09 E-value=1.6e+02 Score=25.17 Aligned_cols=32 Identities=28% Similarity=0.471 Sum_probs=23.0
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.|+++| .|.|+.|||.+++-. ++.+|++++++
T Consensus 15 ~~k~vl--ItGas~gIG~~~a~~---l~~~G~~vi~~ 46 (306)
T PRK06197 15 SGRVAV--VTGANTGLGYETAAA---LAAKGAHVVLA 46 (306)
T ss_pred CCCEEE--EcCCCCcHHHHHHHH---HHHCCCEEEEE
Confidence 356644 478888888887654 45889998877
No 355
>cd01268 Numb Numb Phosphotyrosine-binding (PTB) domain. Numb Phosphotyrosine-binding (PTB) domain. Numb is a membrane associated adaptor protein, which is a determinant of asymmetric cell division. Numb has an N-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=20.96 E-value=53 Score=26.77 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=20.9
Q ss_pred ecccccccceecccccCCCCCCccccccccceeeec-cCCcc
Q 043034 132 LISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLP-SGGER 172 (197)
Q Consensus 132 ~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~-d~g~r 172 (197)
+...+|+|+|....-.|+. -+||.|+.. ++++|
T Consensus 86 D~~d~r~FayIakd~~~~r--------~~CHvF~~~k~sa~~ 119 (138)
T cd01268 86 DRNFDRGFSYICRDGTTRR--------WMCHGFLAVKDTGER 119 (138)
T ss_pred CCCCCcEEEEEecCCCccc--------EEEEEEEeeccchhH
Confidence 5566777777665544332 279999986 44554
No 356
>PLN00015 protochlorophyllide reductase
Probab=20.92 E-value=1e+02 Score=26.76 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=19.4
Q ss_pred CCChHHHHHHHHHhhhHHhhcC-CcEEEE
Q 043034 22 TSSNTGIGLAFISAVRIAAVRG-YKSYHC 49 (197)
Q Consensus 22 tsgntgi~lA~iaa~~~~~~~G-yk~~~~ 49 (197)
|.|+.|||++++-. ++.+| ++++++
T Consensus 3 TGas~GIG~aia~~---l~~~G~~~V~~~ 28 (308)
T PLN00015 3 TGASSGLGLATAKA---LAETGKWHVVMA 28 (308)
T ss_pred eCCCChHHHHHHHH---HHHCCCCEEEEE
Confidence 67788899887644 55789 998887
No 357
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=20.84 E-value=1.9e+02 Score=23.92 Aligned_cols=31 Identities=32% Similarity=0.583 Sum_probs=21.5
Q ss_pred CCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 14 GKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 14 G~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
|+++|| |.|+.|||.+++-. ++.+|++++++
T Consensus 9 ~k~vlI--tG~s~gIG~~la~~---l~~~G~~v~~~ 39 (266)
T PRK06171 9 GKIIIV--TGGSSGIGLAIVKE---LLANGANVVNA 39 (266)
T ss_pred CCEEEE--eCCCChHHHHHHHH---HHHCCCEEEEE
Confidence 555455 66667777776544 44899999887
No 358
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.74 E-value=2e+02 Score=23.26 Aligned_cols=30 Identities=37% Similarity=0.341 Sum_probs=18.3
Q ss_pred CEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 15 KSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 15 ~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
++++| |.|+.|||.+++-. ++.+|++++++
T Consensus 8 ~~vlV--tG~sg~iG~~l~~~---L~~~G~~Vi~~ 37 (239)
T PRK07666 8 KNALI--TGAGRGIGRAVAIA---LAKEGVNVGLL 37 (239)
T ss_pred CEEEE--EcCCchHHHHHHHH---HHHCCCEEEEE
Confidence 44466 44455555555443 23899998887
No 359
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=20.65 E-value=1.2e+02 Score=25.29 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=19.2
Q ss_pred eeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 20 EITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 20 e~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
=.|.++.|||++++-. ++.+|++++++
T Consensus 5 lITGas~gIG~~~a~~---l~~~G~~V~~~ 31 (267)
T TIGR02685 5 VVTGAAKRIGSSIAVA---LHQEGYRVVLH 31 (267)
T ss_pred EEeCCCCcHHHHHHHH---HHhCCCeEEEE
Confidence 3466667777776544 55899999886
No 360
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=20.50 E-value=3.6e+02 Score=24.81 Aligned_cols=72 Identities=17% Similarity=0.209 Sum_probs=49.4
Q ss_pred CCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcC-CcEEEEecccccCCCcceeccccccccccccccceeEEEcCcHHH
Q 043034 10 LITPGKSILIEITSSNTGIGLAFISAVRIAAVRG-YKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSEEA 88 (197)
Q Consensus 10 ~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~G-yk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~VsDeEA 88 (197)
.+++|+.+||-..||--|...--+|+ ..| .+++.+ ....+..+++-+|.|+++.-++++.
T Consensus 154 ~~~~g~~vLv~ggsggVG~~aiQlAk-----~~~~~~v~t~--------------~s~e~~~l~k~lGAd~vvdy~~~~~ 214 (347)
T KOG1198|consen 154 KLSKGKSVLVLGGSGGVGTAAIQLAK-----HAGAIKVVTA--------------CSKEKLELVKKLGADEVVDYKDENV 214 (347)
T ss_pred ccCCCCeEEEEeCCcHHHHHHHHHHH-----hcCCcEEEEE--------------cccchHHHHHHcCCcEeecCCCHHH
Confidence 68899988888777766666555666 777 444333 1222334567788999999999888
Q ss_pred HHHHHHHHHHhCC
Q 043034 89 IETAQQLAHKEGL 101 (197)
Q Consensus 89 i~aaR~LAr~EGI 101 (197)
.+...... ..|+
T Consensus 215 ~e~~kk~~-~~~~ 226 (347)
T KOG1198|consen 215 VELIKKYT-GKGV 226 (347)
T ss_pred HHHHHhhc-CCCc
Confidence 88887764 3444
No 361
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=20.48 E-value=1.9e+02 Score=23.97 Aligned_cols=32 Identities=28% Similarity=0.435 Sum_probs=22.6
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.|+++| .|.|+.|||.+++-. ++.+|++++++
T Consensus 7 ~~k~vl--ItGas~gIG~~ia~~---l~~~G~~v~~~ 38 (260)
T PRK08416 7 KGKTLV--ISGGTRGIGKAIVYE---FAQSGVNIAFT 38 (260)
T ss_pred CCCEEE--EeCCCchHHHHHHHH---HHHCCCEEEEE
Confidence 355644 477777888777655 45899998876
No 362
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=20.48 E-value=76 Score=21.91 Aligned_cols=17 Identities=35% Similarity=0.645 Sum_probs=13.9
Q ss_pred HHHHcCCCCCCCEEEEeeC
Q 043034 4 DAEDKGLITPGKSILIEIT 22 (197)
Q Consensus 4 ~ae~~G~i~pG~t~Iie~t 22 (197)
.|++.| |++|+. |++.-
T Consensus 37 ~a~~~g-l~~GD~-Il~IN 53 (81)
T PF00595_consen 37 PAERAG-LKVGDR-ILEIN 53 (81)
T ss_dssp HHHHHT-SSTTEE-EEEET
T ss_pred hHHhcc-cchhhh-hheeC
Confidence 378889 999998 88864
No 363
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=20.46 E-value=1.2e+02 Score=24.04 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHH---hCC------eeeehhHHHHHHHHHH
Q 043034 86 EEAIETAQQLAHK---EGL------LVGISSDAAAAASIKV 117 (197)
Q Consensus 86 eEAi~aaR~LAr~---EGI------~VG~SSGAaLAAAlkl 117 (197)
+|+.++.+++.++ .|+ ++|-|+|+.++..+-+
T Consensus 50 ~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg~la~~~~~ 90 (211)
T PF07859_consen 50 EDVKAAYRWLLKNADKLGIDPERIVLIGDSAGGHLALSLAL 90 (211)
T ss_dssp HHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHH
T ss_pred cccccceeeeccccccccccccceEEeecccccchhhhhhh
Confidence 4555566666554 343 8899999999876543
No 364
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=20.36 E-value=2.4e+02 Score=24.78 Aligned_cols=37 Identities=11% Similarity=0.147 Sum_probs=26.8
Q ss_pred HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCc-EEEE
Q 043034 7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK-SYHC 49 (197)
Q Consensus 7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk-~~~~ 49 (197)
+.+.+++|++++|-+ +|..|..++.++. .+|.+ ++.+
T Consensus 181 ~~~~~~~g~~VlI~g-~g~vG~~~~~lak-----~~G~~~vi~~ 218 (367)
T cd08263 181 HAADVRPGETVAVIG-VGGVGSSAIQLAK-----AFGASPIIAV 218 (367)
T ss_pred hcccCCCCCEEEEEC-CcHHHHHHHHHHH-----HcCCCeEEEE
Confidence 346678999877764 6777777777777 99998 5544
No 365
>PRK07825 short chain dehydrogenase; Provisional
Probab=20.33 E-value=2e+02 Score=23.98 Aligned_cols=31 Identities=39% Similarity=0.422 Sum_probs=20.1
Q ss_pred CCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 14 GKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 14 G~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
|+++|| |.|+.|||.+++-. ++.+|++++++
T Consensus 5 ~~~ilV--tGasggiG~~la~~---l~~~G~~v~~~ 35 (273)
T PRK07825 5 GKVVAI--TGGARGIGLATARA---LAALGARVAIG 35 (273)
T ss_pred CCEEEE--eCCCchHHHHHHHH---HHHCCCEEEEE
Confidence 445455 66666676666543 33889998887
No 366
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=20.27 E-value=2e+02 Score=27.33 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=30.9
Q ss_pred CCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 9 GLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 9 G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
|.+.+|++ ++=.-.|.-|.++|..++ .+|.+++++
T Consensus 197 ~~~l~Gkt-VvViG~G~IG~~va~~ak-----~~Ga~ViV~ 231 (413)
T cd00401 197 DVMIAGKV-AVVAGYGDVGKGCAQSLR-----GQGARVIVT 231 (413)
T ss_pred CCCCCCCE-EEEECCCHHHHHHHHHHH-----HCCCEEEEE
Confidence 66779998 788899999999999999 999998776
No 367
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.20 E-value=2e+02 Score=23.25 Aligned_cols=32 Identities=38% Similarity=0.450 Sum_probs=20.6
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+|+++|| |.|+.|||.+++-. ++.+|++++++
T Consensus 3 ~~~~vlI--tGa~g~iG~~~a~~---l~~~g~~v~~~ 34 (250)
T PRK08063 3 SGKVALV--TGSSRGIGKAIALR---LAEEGYDIAVN 34 (250)
T ss_pred CCCEEEE--eCCCchHHHHHHHH---HHHCCCEEEEE
Confidence 3555455 66666677665544 44889998764
No 368
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=20.19 E-value=2.1e+02 Score=23.22 Aligned_cols=31 Identities=39% Similarity=0.492 Sum_probs=18.7
Q ss_pred CCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 14 GKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 14 G~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+++++| |.|+.+||.+++-. ++.+||+++++
T Consensus 4 ~~~vlI--tG~sg~iG~~la~~---l~~~g~~v~~~ 34 (258)
T PRK12429 4 GKVALV--TGAASGIGLEIALA---LAKEGAKVVIA 34 (258)
T ss_pred CCEEEE--ECCCchHHHHHHHH---HHHCCCeEEEE
Confidence 445466 55555555554443 23789999887
No 369
>PRK07831 short chain dehydrogenase; Provisional
Probab=20.15 E-value=2e+02 Score=23.73 Aligned_cols=34 Identities=32% Similarity=0.432 Sum_probs=21.9
Q ss_pred CCCCCEEEEeeCCCh-HHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 11 ITPGKSILIEITSSN-TGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 11 i~pG~t~Iie~tsgn-tgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+.+|++++| |.|+ .|||.+++-. ++.+|++++++
T Consensus 14 ~~~~k~vlI--tG~sg~gIG~~ia~~---l~~~G~~V~~~ 48 (262)
T PRK07831 14 LLAGKVVLV--TAAAGTGIGSATARR---ALEEGARVVIS 48 (262)
T ss_pred ccCCCEEEE--ECCCcccHHHHHHHH---HHHcCCEEEEE
Confidence 345666566 4444 3677766644 44899998876
No 370
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=20.14 E-value=66 Score=23.26 Aligned_cols=32 Identities=13% Similarity=0.261 Sum_probs=18.0
Q ss_pred cccccCCCCCCccccccccceeeeccCCccccCccc
Q 043034 143 INSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTEL 178 (197)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~ 178 (197)
+.+.-+++-||||.--.. +|-+.|-.|..-.+
T Consensus 14 ~k~~~~~~~Cp~C~~ak~----~L~~~~i~y~~idv 45 (90)
T cd03028 14 MKGTPEEPRCGFSRKVVQ----ILNQLGVDFGTFDI 45 (90)
T ss_pred EcCCCCCCCCcHHHHHHH----HHHHcCCCeEEEEc
Confidence 556667788999964222 33344445544433
No 371
>PRK07402 precorrin-6B methylase; Provisional
Probab=20.13 E-value=1.9e+02 Score=23.44 Aligned_cols=34 Identities=12% Similarity=0.023 Sum_probs=25.4
Q ss_pred CCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 10 LITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 10 ~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
.++||++ |+|.-+|.-.+++.+.-. ..+.+++.+
T Consensus 37 ~~~~~~~-VLDiG~G~G~~~~~la~~-----~~~~~V~~v 70 (196)
T PRK07402 37 RLEPDSV-LWDIGAGTGTIPVEAGLL-----CPKGRVIAI 70 (196)
T ss_pred CCCCCCE-EEEeCCCCCHHHHHHHHH-----CCCCEEEEE
Confidence 4678887 999999988887777544 456677776
No 372
>PLN02702 L-idonate 5-dehydrogenase
Probab=20.10 E-value=2.7e+02 Score=24.44 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=26.0
Q ss_pred HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
+...+++|++++|-+ .|..|..+..++. .+|.+.+++
T Consensus 175 ~~~~~~~g~~vlI~g-~g~vG~~~~~~a~-----~~G~~~v~~ 211 (364)
T PLN02702 175 RRANIGPETNVLVMG-AGPIGLVTMLAAR-----AFGAPRIVI 211 (364)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCCEEEE
Confidence 566788999866653 5666666666777 899875444
No 373
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=20.01 E-value=1.6e+02 Score=24.54 Aligned_cols=32 Identities=13% Similarity=0.184 Sum_probs=24.2
Q ss_pred CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034 13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC 49 (197)
Q Consensus 13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~ 49 (197)
++++++|=..||..|..|+-... ..||+++.+
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~-----~~g~~V~~~ 47 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLL-----AKGFAVKAG 47 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHH-----hCCCEEEEE
Confidence 34556787778888888777777 889998875
Done!