RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 043034
(197 letters)
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Length = 322
Score = 107 bits (269), Expect = 2e-28
Identities = 54/140 (38%), Positives = 65/140 (46%), Gaps = 46/140 (32%)
Query: 61 VLSHVVMGKHLIQ------------ASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSD 108
+LS G H IQ + QVSS+E+I+ A+QLA KEGLLVGISS
Sbjct: 212 ILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSG 271
Query: 109 AAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPS 168
AAAAA+IK+A+ PEN L V + PS
Sbjct: 272 AAAAAAIKLAQRPENAGKLFVA----------------------------------IFPS 297
Query: 169 GGERYLSTELFDSITHEAET 188
GERYLST LFD+ EAE
Sbjct: 298 FGERYLSTVLFDATRKEAEA 317
Score = 80.6 bits (200), Expect = 1e-18
Identities = 29/45 (64%), Positives = 33/45 (73%), Gaps = 5/45 (11%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
MI DAE KGLI PG+S+LIE TS NTG+GLAF AA +GYK
Sbjct: 53 MISDAEKKGLIKPGESVLIEPTSGNTGVGLAF-----TAAAKGYK 92
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP
dependent enzyme, serine ACET transferase; HET: LLP;
1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A* 4air_A*
Length = 334
Score = 106 bits (267), Expect = 4e-28
Identities = 38/140 (27%), Positives = 55/140 (39%), Gaps = 46/140 (32%)
Query: 61 VLSHVVMGKHLIQ------------ASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSD 108
VLS G H IQ S + V+ ++AIETA +L +G+ G S
Sbjct: 217 VLSGGKPGPHKIQGIGPGFVPDVLDRSLIDEVLCVAGDDAIETALKLTRSDGVFCGFSGG 276
Query: 109 AAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPS 168
A A++K+A+ PE + IV ++PS
Sbjct: 277 ANVYAALKIAERPEMEGKTIVT----------------------------------VIPS 302
Query: 169 GGERYLSTELFDSITHEAET 188
GERYLST L+ S+ E +
Sbjct: 303 FGERYLSTTLYRSVRDEVSS 322
Score = 79.5 bits (197), Expect = 4e-18
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 5/45 (11%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
+ AE +G + PGKSI++E +S NTG+ LA + A+RGYK
Sbjct: 58 IYDKAEKEGKLIPGKSIVVESSSGNTGVSLAH-----LGAIRGYK 97
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis,
assimilatory sulfate reduction, S plant inorganic sulfur
uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Length = 430
Score = 106 bits (266), Expect = 2e-27
Identities = 58/140 (41%), Positives = 65/140 (46%), Gaps = 46/140 (32%)
Query: 61 VLSHVVMGKHLIQ------------ASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSD 108
+LS G H IQ + +SSEEAIETA+QLA KEGL+VGISS
Sbjct: 320 ILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSG 379
Query: 109 AAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPS 168
AAAAA+IKVAK PEN LI V + PS
Sbjct: 380 AAAAAAIKVAKRPENAGKLIAV----------------------------------VFPS 405
Query: 169 GGERYLSTELFDSITHEAET 188
GERYLST LF SI E E
Sbjct: 406 FGERYLSTPLFQSIREEVEK 425
Score = 80.5 bits (199), Expect = 4e-18
Identities = 29/45 (64%), Positives = 34/45 (75%), Gaps = 5/45 (11%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
M+ DAE KG I+PGKS+L+E TS NTGIGLAF IAA RGY+
Sbjct: 161 MVTDAEQKGFISPGKSVLVEPTSGNTGIGLAF-----IAASRGYR 200
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism,
cysteine biosynthesis, transferase; HET: LLP; 1.80A
{Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Length = 313
Score = 101 bits (255), Expect = 2e-26
Identities = 45/134 (33%), Positives = 58/134 (43%), Gaps = 46/134 (34%)
Query: 61 VLSHVVMGKHLIQ------------ASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSD 108
VLS G H IQ + V +E+A+ A++LA +EGLLVGISS
Sbjct: 212 VLSGGQKGPHPIQGIGAGFVPPVLDQDLVDEIITVGNEDALNVARRLAREEGLLVGISSG 271
Query: 109 AAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPS 168
AA A+++VA+ PEN LIVV +LP
Sbjct: 272 AATVAALQVARRPENAGKLIVV----------------------------------VLPD 297
Query: 169 GGERYLSTELFDSI 182
GERYLST LF +
Sbjct: 298 FGERYLSTPLFADV 311
Score = 73.7 bits (182), Expect = 4e-16
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 6/45 (13%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
M++ AE GLI P +I++E TS NTGI LA + A RGY+
Sbjct: 54 MLQAAEQAGLIKPD-TIILEPTSGNTGIALAM-----VCAARGYR 92
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY
crystallography, sulfhydrylase; HET: LLP; 1.55A
{Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X*
3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Length = 316
Score = 101 bits (255), Expect = 2e-26
Identities = 37/102 (36%), Positives = 49/102 (48%), Gaps = 34/102 (33%)
Query: 81 FQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFS 140
V S+ A+ TA++L +EG+L GISS AA AA+ ++AK+PE LIVV
Sbjct: 247 ETVDSDTALATARRLMAEEGILAGISSGAAVAAADRLAKLPEFADKLIVV---------- 296
Query: 141 FCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSI 182
+LPS ERYLST LF+ I
Sbjct: 297 ------------------------ILPSASERYLSTALFEGI 314
Score = 73.3 bits (181), Expect = 6e-16
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 6/45 (13%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
M+ AE G +T GK I ++ TS NTGI LA+ +AA RGYK
Sbjct: 49 MVWQAEKDGTLTKGKEI-VDATSGNTGIALAY-----VAAARGYK 87
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba
histolytica} PDB: 3bm5_A*
Length = 343
Score = 99.2 bits (248), Expect = 3e-25
Identities = 34/139 (24%), Positives = 54/139 (38%), Gaps = 47/139 (33%)
Query: 61 VLSHVVMGKHLIQ------------ASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSD 108
VL G H IQ + + +++A + A+ + +G++ G+SS
Sbjct: 223 VLEGKAKGPHGIQGIGAGFIPDIYKKEFVDEIIPIKTQDAWKMARAVVKYDGIMCGMSSG 282
Query: 109 AAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPS 168
AA A +K A+ PEN+ IV+ ++PS
Sbjct: 283 AAILAGLKEAEKPENEGKTIVI----------------------------------IVPS 308
Query: 169 GGERYLSTELFDSITHEAE 187
GERYLST+L+ I E
Sbjct: 309 CGERYLSTDLYK-IKDEGT 326
Score = 71.8 bits (177), Expect = 2e-15
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
++ A G + PG I IE TS NTGI L AV GY+
Sbjct: 65 IVYQAIKDGRLKPGMEI-IESTSGNTGIALCQ-----AGAVFGYR 103
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp
fold, amino-acid biosynthesis; HET: PLP; 1.53A
{Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A*
3dwi_A*
Length = 325
Score = 96.5 bits (241), Expect = 2e-24
Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 36/116 (31%)
Query: 81 FQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPEND--RILIVVSLISYKLY 138
+ V + +A+ ++L H EG+ GIS+ A A++ V R I +
Sbjct: 242 YSVGAVDAVRRTRELVHTEGIFAGISTGAVLHAALGVGAGALAAGERADIAL-------- 293
Query: 139 FSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAETCLLIQV 194
++ G +YLST + +AET L Q+
Sbjct: 294 --------------------------VVADAGWKYLSTGAYAGSLDDAETALEGQL 323
Score = 69.6 bits (171), Expect = 1e-14
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 6/45 (13%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
MI+ AE GL+ PG +I +E TS NTGI LA A ++GY+
Sbjct: 60 MIEQAEADGLLRPGATI-LEPTSGNTGISLAM-----AARLKGYR 98
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1
PDB: 2eco_A* 2ecq_A* 2efy_A*
Length = 304
Score = 96.4 bits (241), Expect = 2e-24
Identities = 32/132 (24%), Positives = 48/132 (36%), Gaps = 47/132 (35%)
Query: 61 VLSHVVMGKHLIQ------------ASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSD 108
VLS MG+H Q S + QV E+A A++LA +EGL +G+SS
Sbjct: 206 VLSGGKMGQHGFQGMGPGFIPENLDLSLLDGVIQVWEEDAFPLARRLAREEGLFLGMSSG 265
Query: 109 AAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPS 168
A+++VA+ + + P
Sbjct: 266 GIVWAALQVAR-ELGPGKRVAC----------------------------------ISPD 290
Query: 169 GGERYLSTELFD 180
GG +YLST L+
Sbjct: 291 GGWKYLSTPLYA 302
Score = 74.1 bits (183), Expect = 3e-16
Identities = 25/46 (54%), Positives = 33/46 (71%), Gaps = 6/46 (13%)
Query: 1 MIKDAEDKGLITPGK-SILIEITSSNTGIGLAFISAVRIAAVRGYK 45
MIKDAE++G++ PG +++E TS NTGIGLA IAA RGY+
Sbjct: 47 MIKDAEERGILRPGSGQVIVEPTSGNTGIGLAM-----IAASRGYR 87
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics,
NPPSFA, NAT project on protein structural and functional
analyses; 1.90A {Geobacillus kaustophilus}
Length = 308
Score = 91.8 bits (229), Expect = 9e-23
Identities = 38/132 (28%), Positives = 53/132 (40%), Gaps = 47/132 (35%)
Query: 61 VLSHVVMGKHLIQ------------ASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSD 108
VLS G H IQ S ++ V++EEA A++ A +EG+L GISS
Sbjct: 209 VLSGGKPGPHKIQGIGAGFVPDILDTSIYDGVITVTTEEAFAAARRAAREEGILGGISSG 268
Query: 109 AAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPS 168
AA A++KVAK ++ ++PS
Sbjct: 269 AAIHAALKVAK-ELGKGKKVLA----------------------------------IIPS 293
Query: 169 GGERYLSTELFD 180
GERYLST L+
Sbjct: 294 NGERYLSTPLYQ 305
Score = 70.6 bits (174), Expect = 5e-15
Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 6/45 (13%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
MI+ AE G + PG +I +E TS NTGIGLA +AA +GYK
Sbjct: 52 MIEAAEKAGKLKPGDTI-VEPTSGNTGIGLAM-----VAAAKGYK 90
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J
protein structure initiative, joint center for
structural G transferase; 1.80A {Thermotoga maritima}
SCOP: c.79.1.1 PDB: 3fca_A*
Length = 303
Score = 88.3 bits (220), Expect = 2e-21
Identities = 41/128 (32%), Positives = 48/128 (37%), Gaps = 47/128 (36%)
Query: 61 VLSHVVMGKHLIQ------------ASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSD 108
VLS GKH IQ S + V EEA E A+ LA KEGLLVGISS
Sbjct: 210 VLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLVGISSG 269
Query: 109 AAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPS 168
A AA++KVA+ D +V + P
Sbjct: 270 ANVAAALKVAQKLGPDA-RVVT----------------------------------VAPD 294
Query: 169 GGERYLST 176
ERYLS
Sbjct: 295 HAERYLSI 302
Score = 68.7 bits (169), Expect = 2e-14
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 8/45 (17%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
MI DAE +GL+ G ++E TS N GI +A I A RG++
Sbjct: 54 MILDAEKRGLLKNG---IVEPTSGNMGIAIAM-----IGAKRGHR 90
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase;
HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Length = 389
Score = 89.3 bits (222), Expect = 2e-21
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 34/99 (34%)
Query: 81 FQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFS 140
+V+ EEA+E ++A +GL++G S AA A K A + + VV
Sbjct: 316 AEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPGDYVV---------- 365
Query: 141 FCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELF 179
++P G +YLS
Sbjct: 366 ------------------------VVPDTGFKYLSLVQN 380
Score = 62.7 bits (153), Expect = 4e-12
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
+I + + G S++ + TSSN G+ L+ +A + GY+
Sbjct: 134 IISRLSRR--VEKG-SLVADATSSNFGVALSA-----VARLYGYR 170
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis,
transferase, ENZ kinetics, enzymatic sythesis of novel
compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB:
2bhs_A* 2bht_A* 2jc3_A*
Length = 303
Score = 86.0 bits (214), Expect = 1e-20
Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 36/100 (36%)
Query: 81 FQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFS 140
+ +A T ++LA +EG+ G+SS A A +++VA N ++V
Sbjct: 230 LDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAA--ANPDAVVVA---------- 277
Query: 141 FCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFD 180
++ G+RYLST +F
Sbjct: 278 ------------------------IICDRGDRYLSTGVFG 293
Score = 71.4 bits (176), Expect = 3e-15
Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 6/45 (13%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
MI +AE +G I PG + IE TS NTGI LA IAA++GY+
Sbjct: 48 MIVEAEKRGEIKPGDVL-IEATSGNTGIALAM-----IAALKGYR 86
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of
PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens}
SCOP: c.79.1.1 PDB: 1m54_A*
Length = 435
Score = 75.1 bits (185), Expect = 3e-16
Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 35/100 (35%)
Query: 81 FQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFS 140
F+ + EEA A+ L +EGLL G S+ + A ++K A+ + + VV
Sbjct: 346 FKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQELQEGQ-RCVV---------- 394
Query: 141 FCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFD 180
+LP Y++ L D
Sbjct: 395 ------------------------ILPDSVRNYMTKFLSD 410
Score = 67.0 bits (164), Expect = 2e-13
Identities = 26/45 (57%), Positives = 30/45 (66%), Gaps = 6/45 (13%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
MI+DAE G + PG +I IE TS NTGIGLA AAVRGY+
Sbjct: 148 MIEDAERDGTLKPGDTI-IEPTSGNTGIGLAL-----AAAVRGYR 186
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 73.1 bits (180), Expect = 1e-15
Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 35/100 (35%)
Query: 81 FQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFS 140
++ + +++L +EGLL G SS A A+++ A+ VV
Sbjct: 298 TKIGDSDCFPMSRRLNAEEGLLCGGSSGGAMHAALEHAR-KLKKGQRCVV---------- 346
Query: 141 FCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFD 180
+LP G Y++ + D
Sbjct: 347 ------------------------ILPDGIRNYMTKFVSD 362
Score = 67.4 bits (165), Expect = 1e-13
Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 6/45 (13%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
M++DAE++GL+ PG +I IE TS NTGIGLA AV+GYK
Sbjct: 100 MVQDAEEQGLLKPGYTI-IEPTSGNTGIGLAM-----ACAVKGYK 138
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.1 bits (140), Expect = 2e-10
Identities = 38/180 (21%), Positives = 61/180 (33%), Gaps = 38/180 (21%)
Query: 9 GLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMG 68
G TPG+ L TG ++AV IA ++S+ R VL + G
Sbjct: 257 GF-TPGE--LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA----ITVLFFI--G 307
Query: 69 KHLIQASCHEYCFQVSSEEAIETAQQLAHKEG-----LLV-GISSDAAAAASIKV-AKIP 121
C+E + +S L + EG L + ++ + K + +P
Sbjct: 308 VR-----CYE-AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP 361
Query: 122 ENDRILI---------VV-----SLISYKLYF-SFCINSLVNQSPCPFCSLHEAC-HQFL 165
++ I VV SL L S ++QS PF ++FL
Sbjct: 362 AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL 421
Score = 48.5 bits (115), Expect = 4e-07
Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 26/145 (17%)
Query: 1 MIKDAEDKGLITP-----GKSILIEIT--SSNTGIGLAFISAVRIAAVRG-YKSYHCPTR 52
+D + KGLI G S L E +S + ++ S V + RG P
Sbjct: 1743 AFEDLKSKGLIPADATFAGHS-LGEYAALASLADV-MSIESLVEVVFYRGMTMQVAVPRD 1800
Query: 53 HLHHSEY--VVLSHVVMGKHLIQASCHEYCFQVSSE--EAIETA------QQLA---HKE 99
L S Y + ++ + Q + +V +E QQ
Sbjct: 1801 ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLR 1860
Query: 100 GL--LVGISSDAAAAASIKVAKIPE 122
L + + + I + ++ +
Sbjct: 1861 ALDTVTNV-LNFIKLQKIDIIELQK 1884
Score = 27.3 bits (60), Expect = 3.7
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 17/74 (22%)
Query: 117 VAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACH--------QFLLPS 168
AK+ + + +V + K Y + I + +L A F
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF---- 160
Query: 169 GG----ERYLSTEL 178
GG + Y EL
Sbjct: 161 GGQGNTDDYFE-EL 173
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme,
S-adenosyl-methionine, allostery; 2.25A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Length = 486
Score = 41.7 bits (98), Expect = 7e-05
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 85 SEEAIETAQQLAHKEGLLVGISSDAAAAASIKVA---KIPENDRILIVV 130
+EE + A A G+ + + A A K+ I DR ++V
Sbjct: 383 TEEELMDAMAQADSTGMFICPHTGVALTALFKLRNQGVIAPTDRTVVVS 431
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A
{Aquifex aeolicus}
Length = 352
Score = 39.2 bits (92), Expect = 4e-04
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 79 YCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVA---KIPENDRILIVV 130
VS E + + +A EG+ +S A+ A IK+ + + +
Sbjct: 264 KIDAVSDSEILYAYKLIASTEGVFCEPASAASVAGLIKLVREGFFKGGEVVTCTL 318
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus
thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Length = 351
Score = 38.8 bits (91), Expect = 6e-04
Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 79 YCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAK---IPENDRILIVV 130
V+ EE + + LA +EG+ +S AA A K+ + + +++ +
Sbjct: 262 VIEAVTDEEILFAYRYLAREEGIFCEPASAAAMAGVFKLLREGRLEPESTVVLTL 316
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate,
PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Length = 360
Score = 38.0 bits (89), Expect = 9e-04
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 79 YCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAK---IPENDRILIVV 130
S EE + +A EG+ V +S A+ A +K + ++ V
Sbjct: 271 RFLAASDEEILAAYHLVARVEGVFVEPASAASIAGLLKAIDDGWVARGSTVVCTV 325
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural
genomics/proteomics initiative, structural genomics,
lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP:
c.79.1.1 PDB: 1wdw_B*
Length = 388
Score = 32.9 bits (76), Expect = 0.051
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 83 VSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIV 129
V+ EEA++ +L+ EG++ + S A A ++K+AK D I+IV
Sbjct: 322 VTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIV 368
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase;
substrate, PLP, crystal, complex, hydrolase; HET: PLP;
1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A*
1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Length = 338
Score = 32.5 bits (74), Expect = 0.076
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 9/61 (14%)
Query: 77 HEYCFQ---VSSEEAIETAQQLAHKEGLLV-----GISSDAAAAASIKVAKIPENDRILI 128
+ + +E +E + A EG+L G S ++ + PE R+L
Sbjct: 261 ERFAGPEYGLPNEGTLEAIRLCARTEGMLTDPVYEGKSM-HGMIEMVRNGEFPEGSRVLY 319
Query: 129 V 129
Sbjct: 320 A 320
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan
biosynthesis, structural genomics; 2.20A {Mycobacterium
tuberculosis} PDB: 2o2j_A
Length = 422
Score = 31.8 bits (73), Expect = 0.13
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 83 VSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIV 129
++ EA++ L EG++ I S A A ++K+ +++V
Sbjct: 353 ITDSEAMDAFGLLCRMEGIIPAIESAHAVAGALKLGVELGRGAVIVV 399
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase,
tryptophan biosynthesis, pyridoxal phosphate; HET: IPL
PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB:
1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B*
2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B*
1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ...
Length = 396
Score = 31.3 bits (72), Expect = 0.15
Identities = 14/48 (29%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 83 VSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAK-IPENDRILIV 129
++ +EA+E + L EG++ + S A A ++K+ + PE +++L+V
Sbjct: 326 ITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVV 373
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
2.50A {Thermus thermophilus}
Length = 418
Score = 31.4 bits (72), Expect = 0.15
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 83 VSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIV 129
V+ EEA+E + LA EG++ + S A A + KV + D+++++
Sbjct: 351 VTDEEALEGFKLLARLEGIIPALESAHAIAYAAKVVPEMDKDQVVVI 397
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.31
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 93 QQLAHKEGLLVGISSDAAAAASIKVAKI 120
Q L + L + D+A A +IK A +
Sbjct: 20 QALKKLQASLKLYADDSAPALAIK-ATM 46
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold,
phospholipid synthesis, phosphatidylcholine,
phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A
{Rattus norvegicus}
Length = 236
Score = 29.2 bits (65), Expect = 0.67
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 87 EAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSL 132
A+ A+ L L+VG+ SD + EN+R V
Sbjct: 94 RALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHC 139
>3f5f_A Maltose-binding periplasmic protein, heparan sulfate
2-O-sulfotransferase 1; maltose binding protein, fusion,
heparan sulfate biosynthesis; HET: GLC A3P; 2.65A
{Escherichia coli k-12}
Length = 658
Score = 29.6 bits (66), Expect = 0.76
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSD 108
C+ V S A+E A+ E LVG++ +
Sbjct: 527 SSECWNVGSRWALEQAKYNLINEYFLVGVTEE 558
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating
mechanism, electron oxidoreductase; 1.46A {Rhodobacter
sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A
1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Length = 333
Score = 28.7 bits (64), Expect = 1.4
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 21/64 (32%)
Query: 9 GLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMG 68
LI PG+ +++ ++ G F+ YHC ++ HVV G
Sbjct: 105 TLINPGEKVVLRFKATRAGA---FV-------------YHC-----APGGPMIPWHVVSG 143
Query: 69 KHLI 72
Sbjct: 144 MAGC 147
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 2.1
Identities = 31/190 (16%), Positives = 60/190 (31%), Gaps = 53/190 (27%)
Query: 54 LHHSEYVVLSHVVM---GKH-LIQASCHEY------CFQV---------SSEEAIETAQQ 94
L ++ V++ + GK + C Y F++ S E +E Q+
Sbjct: 147 LRPAKNVLI-DG-VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 95 LAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV-----SLI------SYKL--YFSF 141
L ++ SD ++ +++ I R L+ L+ + K F+
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 142 -C-----------INSLVNQSPCPFCSLHEACHQFLLPSGGE----RYLSTELFDSITHE 185
C + L + H + L P + +YL D + E
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHS--MTLTPDEVKSLLLKYLDCRPQD-LPRE 321
Query: 186 AETCLLIQVS 195
T ++S
Sbjct: 322 VLTTNPRRLS 331
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP,
CTP, phosphoethanolamine, cytidylyltra SGC, structural
genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Length = 341
Score = 27.8 bits (62), Expect = 2.4
Identities = 9/52 (17%), Positives = 22/52 (42%), Gaps = 10/52 (19%)
Query: 87 EAIETAQQLAHKEGLLVGISSDAAAAASIKVAK------IPENDRILIVVSL 132
+ +E +LA + ++ G+ D + K + ++R L V++
Sbjct: 216 DFLEKVHRLAERPYIIAGLHFD----QEVNHYKGKNYPIMNLHERTLSVLAC 263
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 27.2 bits (60), Expect = 3.3
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 85 SEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPEN-DRILIVVSL 132
+E +I + KE L + + A I A I EN D I+ V
Sbjct: 151 NENSIAFLNETKEKENLNI-----STALYDINAANIQENYDFIVSTVVF 194
>1nbw_B Glycerol dehydratase reactivase beta subunit; molecular chaperone,
actin-like ATPase domain, beta/BETA/alpha swiveling
domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP:
c.51.3.2
Length = 117
Score = 26.3 bits (58), Expect = 3.6
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 85 SEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPEN 123
+A A L VGI A+ ++ A++P +
Sbjct: 44 GGDAAALGALAARSSPLRVGIGLSASGEIALTHAQLPAD 82
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A*
3pyz_A* 3qcz_A*
Length = 437
Score = 26.4 bits (59), Expect = 7.6
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 79 YCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSL 132
YC + +A QLA + + SD A + D +++ S
Sbjct: 374 YCAPLEGPRGA-SAGQLA-EHLVSARQFSDVETAWRQAMQDADTQDVVIVCGSF 425
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 25.8 bits (57), Expect = 9.4
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 15 KSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
+LI T ++GIGL + + +K
Sbjct: 3 TVVLI--TGCSSGIGLHLAVRLASDPSQSFK 31
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 26.1 bits (57), Expect = 9.4
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 5/34 (14%)
Query: 12 TPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
T + ++ T N GIG + + G
Sbjct: 10 TKRRCAVV--TGGNKGIGFE---ICKQLSSNGIM 38
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 25.8 bits (57), Expect = 9.5
Identities = 18/115 (15%), Positives = 39/115 (33%), Gaps = 18/115 (15%)
Query: 15 KSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQA 74
SILI T N G+GL + A+ + E L+ H+++
Sbjct: 22 NSILI--TGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEI 79
Query: 75 SCHEYCFQVSSEEAIET-AQQLAHKEG-----LLV---GISSDAAAAASIKVAKI 120
+ + +A + + +L GI+ +A +++ ++
Sbjct: 80 D-------LRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQEL 127
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.134 0.393
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,909,887
Number of extensions: 165209
Number of successful extensions: 577
Number of sequences better than 10.0: 1
Number of HSP's gapped: 553
Number of HSP's successfully gapped: 71
Length of query: 197
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 108
Effective length of database: 4,216,824
Effective search space: 455416992
Effective search space used: 455416992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.0 bits)