RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 043034
(197 letters)
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 320
Score = 72.2 bits (176), Expect = 6e-16
Identities = 48/116 (41%), Positives = 59/116 (50%), Gaps = 34/116 (29%)
Query: 72 IQASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVS 131
+ + QVSS+E+I+ A+QLA KEGLLVGISS AAAAA+IK+A+ PEN L V
Sbjct: 233 LNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVA- 291
Query: 132 LISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAE 187
+ PS GERYLST LFD+ EAE
Sbjct: 292 ---------------------------------IFPSFGERYLSTVLFDATRKEAE 314
Score = 39.9 bits (92), Expect = 8e-05
Identities = 27/87 (31%), Positives = 39/87 (44%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYV 60
MI DAE KGLI PG+S+LIE TS NTG+GLAF +A + + T
Sbjct: 51 MISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAF 110
Query: 61 VLSHVVMGKHLIQASCHEYCFQVSSEE 87
+ V+ ++ ++
Sbjct: 111 GVELVLTDPAKGMKGAIAKAEEILAKT 137
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine
synthase) {Haemophilus influenzae [TaxId: 727]}
Length = 310
Score = 67.7 bits (164), Expect = 2e-14
Identities = 37/105 (35%), Positives = 49/105 (46%), Gaps = 34/105 (32%)
Query: 75 SCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLIS 134
S + V S+ A+ TA++L +EG+L GISS AA AA+ ++AK+PE LIVV
Sbjct: 240 SIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRLAKLPEFADKLIVV---- 295
Query: 135 YKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELF 179
+LPS ERYLST LF
Sbjct: 296 ------------------------------ILPSASERYLSTALF 310
Score = 33.4 bits (75), Expect = 0.013
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYV 60
M+ AE G +T GK +++ TS NTGI LA+++A R + +
Sbjct: 48 MVWQAEKDGTLTKGK-EIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGL 106
Query: 61 VLSHVVMGKHLIQASCHEYCFQVSSEE 87
++ V+ ++ + +
Sbjct: 107 GVNLVLTEGAKGMKGAIAKAEEIVASD 133
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine
synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 382
Score = 67.5 bits (164), Expect = 4e-14
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 34/95 (35%)
Query: 82 QVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSF 141
+V+ EEA+E ++A +GL++G S AA A K A + + VV
Sbjct: 316 EVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPGDYVV----------- 364
Query: 142 CINSLVNQSPCPFCSLHEACHQFLLPSGGERYLST 176
++P G +YLS
Sbjct: 365 -----------------------VVPDTGFKYLSL 376
Score = 42.9 bits (100), Expect = 8e-06
Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYV 60
+I + + G S++ + TSSN G+ L+ +A + GY++ +
Sbjct: 133 IISRLSRR--VEKG-SLVADATSSNFGVALSA-----VARLYGYRARVYLPGAAEEFGKL 184
Query: 61 VLSHVVMGKHLIQASCHEY 79
+ + + +
Sbjct: 185 LPRLLGAQVIVDPEAPSTV 203
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine
synthase) {Escherichia coli, isoform B (CysM) [TaxId:
562]}
Length = 292
Score = 64.2 bits (155), Expect = 3e-13
Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 36/100 (36%)
Query: 80 CFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYF 139
+ +A T ++LA +EG+ G+SS A A +++VAK + ++ +
Sbjct: 228 VLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAKANPDAVVVAI---------- 277
Query: 140 SFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELF 179
+ G+RYLST +F
Sbjct: 278 --------------------------ICDRGDRYLSTGVF 291
Score = 24.9 bits (53), Expect = 7.0
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHH 56
MI +AE +G I PG + IE TS NTGI LA I+A++ ++ +
Sbjct: 47 MIVEAEKRGEIKPGDVL-IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAA 101
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermus thermophilus [TaxId: 274]}
Length = 302
Score = 63.0 bits (152), Expect = 1e-12
Identities = 31/160 (19%), Positives = 53/160 (33%), Gaps = 39/160 (24%)
Query: 23 SSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKH--LIQASCHEYC 80
+ TG+G + V + + G + S +
Sbjct: 178 GTITGVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLDGV 237
Query: 81 FQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAK-IPENDRILIVVSLISYKLYF 139
QV E+A A++LA +EGL +G+SS A+++VA+ + R+ +
Sbjct: 238 IQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVARELGPGKRVACI---------- 287
Query: 140 SFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELF 179
P GG +YLST L+
Sbjct: 288 --------------------------SPDGGWKYLSTPLY 301
Score = 29.1 bits (64), Expect = 0.29
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
Query: 1 MIKDAEDKGLITPGK-SILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEY 59
MIKDAE++G++ PG +++E TS NTGIGLA I+A R + +
Sbjct: 47 MIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKA 106
Query: 60 VVLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQ 94
V+ + E ++ E Q
Sbjct: 107 FGAELVLTDPERRMLAAREEALRLKEELGAFMPDQ 141
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 355
Score = 62.6 bits (151), Expect = 2e-12
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 37/135 (27%)
Query: 47 YHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQLAHKEGLLVGIS 106
+ + V ++ + + F+ + EEA A+ L +EGLL G S
Sbjct: 248 PEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGS 307
Query: 107 SDAAAAASIKVAK-IPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFL 165
+ + A ++K A+ + E R +++
Sbjct: 308 AGSTVAVAVKAAQELQEGQRCVVI------------------------------------ 331
Query: 166 LPSGGERYLSTELFD 180
LP Y++ L D
Sbjct: 332 LPDSVRNYMTKFLSD 346
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermotoga maritima [TaxId: 2336]}
Length = 293
Score = 60.1 bits (145), Expect = 9e-12
Identities = 44/151 (29%), Positives = 55/151 (36%), Gaps = 52/151 (34%)
Query: 42 RGYKSYHCPTRHLHHSE---YVVLSHVVMGKHLIQ------------ASCHEYCFQVSSE 86
R K + + E VLS GKH IQ S + V E
Sbjct: 178 RVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDE 237
Query: 87 EAIETAQQLAHKEGLLVGISSDAAAAASIKVAK-IPENDRILIVVSLISYKLYFSFCINS 145
EA E A+ LA KEGLLVGISS A AA++KVA+ + + R++ V
Sbjct: 238 EAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLGPDARVVTV---------------- 281
Query: 146 LVNQSPCPFCSLHEACHQFLLPSGGERYLST 176
P ERYLS
Sbjct: 282 --------------------APDHAERYLSI 292
Score = 25.8 bits (56), Expect = 4.1
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 3/87 (3%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYV 60
MI DAE +GL+ G ++E TS N GI +A I A R V + +
Sbjct: 44 MILDAEKRGLLKNG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKML 100
Query: 61 VLSHVVMGKHLIQASCHEYCFQVSSEE 87
V+ L E ++S E
Sbjct: 101 GAELVLTPGELGMKGAVEKALEISRET 127
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Salmonella typhimurium [TaxId: 90371]}
Length = 302
Score = 56.9 bits (136), Expect = 2e-10
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 76 CHEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV 130
+ +++EEAI TA++L +EG+L GISS AA AA++K+ + IVV
Sbjct: 242 LIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVV 296
Score = 33.4 bits (75), Expect = 0.011
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYV 60
MI DAE +G++ PG L+E T+ NTGI LA+++A R + + +
Sbjct: 48 MIWDAEKRGVLKPGV-ELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKAL 106
Query: 61 VLSHVVMGKHLIQASCHEYCFQVSSEE 87
+ V+ + ++ + +
Sbjct: 107 GANLVLTEGAKGMKGAIQKAEEIVASD 133
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14
(SPCC320.14, SPCC330.15c) {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 318
Score = 54.5 bits (130), Expect = 1e-09
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Query: 47 YHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQLAHKEGLLVGIS 106
H T +I+ + VS EE I+ + A + ++V +
Sbjct: 220 VHIDTPKTIADGAQTQHLGNYTFSIIKEKVDDIL-TVSDEELIDCLKFYAARMKIVVEPT 278
Query: 107 SDAAAAASIKVAKIPENDRILIVVS 131
+ AA+ + + +N RI I++S
Sbjct: 279 GCLSFAAARAMKEKLKNKRIGIIIS 303
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 386
Score = 54.5 bits (130), Expect = 1e-09
Identities = 22/114 (19%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 25 NTGIGLAFISAVRIAAVRGYKSYHC------PTRHLHHSEYVVLSHVVMGKHLIQASCHE 78
+G A ++A ++ G SY + + V ++
Sbjct: 258 ESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRA 317
Query: 79 YCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAK-IPENDRILIVVS 131
V+ EEA++ +L+ EG++ + S A A ++K+AK + ++ I++ +S
Sbjct: 318 EYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLS 371
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 325
Score = 49.7 bits (117), Expect = 4e-08
Identities = 12/95 (12%), Positives = 33/95 (34%), Gaps = 2/95 (2%)
Query: 39 AAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQLAHK 98
AV + E L V + + + E + +++ +
Sbjct: 214 IAVGRFGEVMTSKLDNLIKEAAELLGVKVEVRPELYDYSFGEYGKITGEVAQIIRKVGTR 273
Query: 99 EGLLVG-ISSDAAAAASIKVAK-IPENDRILIVVS 131
EG+++ + + A + +A+ ++IL + +
Sbjct: 274 EGIILDPVYTGKAFYGLVDLARKGELGEKILFIHT 308
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Pseudomonas sp., strain ACP [TaxId: 306]}
Length = 338
Score = 49.3 bits (116), Expect = 7e-08
Identities = 12/101 (11%), Positives = 29/101 (28%), Gaps = 5/101 (4%)
Query: 35 AVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQ 94
+ + R + + L + + + +E +E +
Sbjct: 223 DASAKPAQTREQITRIARQTAEKVGLERDIMRADVVLDE-RFAGPEYGLPNEGTLEAIRL 281
Query: 95 LAHKEGLLVGISSDAAAAAS----IKVAKIPENDRILIVVS 131
A EG+L + + ++ + PE R+L
Sbjct: 282 CARTEGMLTDPVYEGKSMHGMIEMVRNGEFPEGSRVLYAHL 322
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus
thermophilus [TaxId: 274]}
Length = 310
Score = 47.3 bits (111), Expect = 3e-07
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 72 IQASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVS 131
I + VS E +E + L + +V + AA ++ + +++S
Sbjct: 244 ILRERVDGILTVSEEALLEAERLLFTRTKQVVEPTGALPLAAVLEHGARL-PQTLALLLS 302
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Yeast (Hansenula saturnus) [TaxId: 4906]}
Length = 341
Score = 47.0 bits (110), Expect = 4e-07
Identities = 13/97 (13%), Positives = 24/97 (24%), Gaps = 9/97 (9%)
Query: 39 AAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQLAHK 98
+ + C+ V +E IE + A +
Sbjct: 232 EKTKEQTLRIANNTAKLIGVEHEFKDFTLDTR-----FAYPCYGVPNEGTIEAIRTCAEQ 286
Query: 99 EGLLVG-ISSDAAAAASIKVAK---IPENDRILIVVS 131
EG+L + + I + K +L V
Sbjct: 287 EGVLTDPVYEGKSMQGLIALIKEDYFKPGANVLYVHL 323
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 390
Score = 46.4 bits (109), Expect = 7e-07
Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 3/133 (2%)
Query: 1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYV 60
G+ G I + G I A + + +
Sbjct: 245 NDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLD 304
Query: 61 VLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAK- 119
S +L +Y ++ +EA+E + L EG++ + S A A ++K+ +
Sbjct: 305 FPSVGPQHAYLNSIGRADY-VSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMRE 363
Query: 120 -IPENDRILIVVS 131
+ +++ +S
Sbjct: 364 QPEKEQLLVVNLS 376
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli
[TaxId: 562]}
Length = 331
Score = 40.3 bits (93), Expect = 7e-05
Identities = 9/62 (14%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Query: 72 IQASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE--NDRILIV 129
+ + V S+ + L + S A A K + +R+ +
Sbjct: 250 LCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYIALHNIRGERLAHI 309
Query: 130 VS 131
+S
Sbjct: 310 LS 311
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 319
Score = 36.3 bits (82), Expect = 0.001
Identities = 12/93 (12%), Positives = 30/93 (32%), Gaps = 9/93 (9%)
Query: 48 HCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISS 107
+ ++ + + V + + +S +EA+ ++ E +LV +
Sbjct: 208 VSLPKITSVAKALGVKTVGSQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPAC 267
Query: 108 DAAAAASIKVA---------KIPENDRILIVVS 131
AA AA ++++V
Sbjct: 268 GAALAAVYSHVIQKLQLEGNLRTPLPSLVVIVC 300
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus
[TaxId: 274]}
Length = 351
Score = 36.2 bits (82), Expect = 0.002
Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 80 CFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVA---KIPENDRILIVVS 131
V+ EE + + LA +EG+ +S AA A K+ ++ +++ ++
Sbjct: 263 IEAVTDEEILFAYRYLAREEGIFCEPASAAAMAGVFKLLREGRLEPESTVVLTLT 317
>d1nbwb_ c.51.3.2 (B:) Glycerol dehydratase reactivase, beta subunit
{Klebsiella pneumoniae [TaxId: 573]}
Length = 113
Score = 27.0 bits (60), Expect = 0.75
Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 5/81 (6%)
Query: 43 GYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQLAHKEGLL 102
G + ++ P HH+ ++ + G C + +A A L
Sbjct: 3 GVRLFYDPR--GHHAG--AINELCWGLEEQGVPCQTITYD-GGGDAAALGALAARSSPLR 57
Query: 103 VGISSDAAAAASIKVAKIPEN 123
VGI A+ ++ A++P +
Sbjct: 58 VGIGLSASGEIALTHAQLPAD 78
>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 248
Score = 26.6 bits (57), Expect = 1.7
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 15 KSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
SILI T N G+GL + A+
Sbjct: 3 NSILI--TGCNRGLGLGLVKALLNLPQPPQH 31
>d1wd3a2 b.42.8.1 (A:338-499) Alpha-L-arabinofuranosidase B (AbfB),
C-terminal domain {Aspergillus kawachii [TaxId: 40384]}
Length = 162
Score = 25.6 bits (56), Expect = 3.0
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 44 YKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASC 76
+S+ PTR+ H E V+ + G +
Sbjct: 114 LRSWSYPTRYFRHYENVLYAASNGGVQTFDSKT 146
Score = 25.6 bits (56), Expect = 3.4
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 25 NTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVV 66
+G V + + TR++ H++ V + VV
Sbjct: 2 VSGPSFTSGEVVSLRV----TTPGYTTRYIAHTDTTVNTQVV 39
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 119
Score = 25.5 bits (56), Expect = 3.1
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 84 SSEEAIETAQQLAHKEGLLVGISSDAA 110
++ A++ AQQ++ LL +AA
Sbjct: 93 ATPMAMQKAQQVSQGLDLLTAKVENAA 119
>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer
{Caenorhabditis elegans [TaxId: 6239]}
Length = 250
Score = 25.6 bits (55), Expect = 4.4
Identities = 12/86 (13%), Positives = 32/86 (37%), Gaps = 12/86 (13%)
Query: 14 GKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQ 73
S+++ T +N GIGL ++ + + R + + + K +
Sbjct: 3 PGSVVV--TGANRGIGLGL--VQQLVKDKNIRHIIATARDVEKATEL--------KSIKD 50
Query: 74 ASCHEYCFQVSSEEAIETAQQLAHKE 99
+ H V+ +++++T +
Sbjct: 51 SRVHVLPLTVTCDKSLDTFVSKVGEI 76
>d1xrsb2 d.230.4.1 (B:33-84) D-lysine 5,6-aminomutase beta subunit
KamE, N-terminal domain {Clostridium sticklandii [TaxId:
1511]}
Length = 52
Score = 23.6 bits (51), Expect = 4.6
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 84 SSEEAIETAQQLAHKEGL 101
++E + E A+Q+A K GL
Sbjct: 12 NNERSAEAAKQIALKMGL 29
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli
[TaxId: 562]}
Length = 224
Score = 24.6 bits (52), Expect = 8.0
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 21 ITSSNTGIGLAFISA--VRIAAVRGYK 45
+T ++T +G S ++ A GY+
Sbjct: 6 VTGTDTEVGKTVASCALLQAAKAAGYR 32
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.134 0.393
Gapped
Lambda K H
0.267 0.0469 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 686,939
Number of extensions: 29608
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 46
Length of query: 197
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 116
Effective length of database: 1,295,466
Effective search space: 150274056
Effective search space used: 150274056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.7 bits)