BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043038
(271 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 99/235 (42%), Gaps = 43/235 (18%)
Query: 1 MPNLTKFTQLLFRSLDSNNMSGLLPL----ISSNLVYLGLSDNSFLGSISHFLCDKINET 56
M L K L L N SG LP +S++L+ L LS N+F G I LC N
Sbjct: 333 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ--NPK 390
Query: 57 KRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFL----VWLDL 112
L+ L L +N G++P + L L LS N G +P+S GSL+ L +WL++
Sbjct: 391 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 113 --GK------------------NRLFGTIPATLKNCTALESLD-------------VERF 139
G+ N L G IP+ L NCT L + + R
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 140 SRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVTTN 194
+ +L L +N F G +P D L LD+ N +G IP + +G + N
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 565
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 77/191 (40%), Gaps = 59/191 (30%)
Query: 59 LEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLF 118
L + L++N L GE+P +NL ILKLSNN F GN+P G L+WLDL N
Sbjct: 489 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 548
Query: 119 GTIPATL--------------------------KNCTA------LESLDVERFSR----- 141
GTIPA + K C + + E+ +R
Sbjct: 549 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 608
Query: 142 ----------------------MVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGA 179
M+ L++ N G +P + L IL++ N++SG+
Sbjct: 609 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 668
Query: 180 IPNYINNVTGM 190
IP+ + ++ G+
Sbjct: 669 IPDEVGDLRGL 679
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 85/188 (45%), Gaps = 22/188 (11%)
Query: 2 PNLTKFTQLLFRSLDSNNMSGLLP--LIS-SNLVYLGLSDNSFLGSISHFLCDKINETKR 58
P L+ ++L+ L N +SG +P L S S L L L N G I ++ K
Sbjct: 409 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ----ELMYVKT 464
Query: 59 LEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLF 118
LE L L+ N L GE+P + NL + LSNN+ G +P G L L L L N
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 524
Query: 119 GTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSG 178
G IPA L +C +L + L+L +N F+G +P Q IA N ++G
Sbjct: 525 GNIPAELGDCRSL-----------IWLDLNTNLFNGTIPAAM----FKQSGKIAANFIAG 569
Query: 179 AIPNYINN 186
YI N
Sbjct: 570 KRYVYIKN 577
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 91/182 (50%), Gaps = 28/182 (15%)
Query: 29 SNLVYLGLSDNS--FLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCW-MSDQ--NL 83
S L +L +S N+ F G +S L K+N LE L L+ N + G W +SD L
Sbjct: 123 SGLKFLNVSSNTLDFPGKVSGGL--KLNS---LEVLDLSANSISGANVVGWVLSDGCGEL 177
Query: 84 KILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVER----- 138
K L +S NK G++ S L +LD+ N IP L +C+AL+ LD+
Sbjct: 178 KHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG 234
Query: 139 -FSRMV-------VLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGM 190
FSR + +LN+ SN+F GP+P L LQ L +A+N +G IP++++
Sbjct: 235 DFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDT 292
Query: 191 VT 192
+T
Sbjct: 293 LT 294
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 83 LKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRM 142
+ L +S N G +P GS+ +L L+LG N + G+IP + + L
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN---------- 680
Query: 143 VVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIP 181
+L+L SNK G +P L +L +D+++NNLSG IP
Sbjct: 681 -ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 74/153 (48%), Gaps = 19/153 (12%)
Query: 30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLS 89
NL +L +S N+F I FL D L+ L ++ N L G+ + LK+L +S
Sbjct: 198 NLEFLDVSSNNFSTGIP-FLGD----CSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 252
Query: 90 NNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKN-CTALESLDVERFSRMVVLNLR 148
+N+F+G +P L L +L L +N+ G IP L C L LD L
Sbjct: 253 SNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD-----------LS 299
Query: 149 SNKFHGPLPTRFCDLAILQILDIADNNLSGAIP 181
N F+G +P F ++L+ L ++ NN SG +P
Sbjct: 300 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%)
Query: 45 ISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSL 104
+S ++ +I L L L N + G +PD + L IL LS+NK G +P + +L
Sbjct: 641 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 700
Query: 105 AFLVWLDLGKNRLFGTIP 122
L +DL N L G IP
Sbjct: 701 TMLTEIDLSNNNLSGPIP 718
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 90/235 (38%), Gaps = 66/235 (28%)
Query: 4 LTKFTQLLFRSLDSNNMSGLLPLISS---NLVYLGLSDNSFLGSISHFLCDKINETKRLE 60
L+ T L + SL +N ++G +P NL L LS+NSF G+I L D + L
Sbjct: 483 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD----CRSLI 538
Query: 61 ALKLNDNYLQGELPDCWMSDQNLKI----------------------------------- 85
L LN N G +P M Q+ KI
Sbjct: 539 WLDLNTNLFNGTIPAA-MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 597
Query: 86 ------------LKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALES 133
+++ + G+ +F + +++LD+ N L G IP
Sbjct: 598 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK---------- 647
Query: 134 LDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVT 188
++ + +LNL N G +P DL L ILD++ N L G IP ++ +T
Sbjct: 648 -EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 701
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 62 LKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTI 121
L ++ N L G +P S L IL L +N G++P+ G L L LDL N+L G I
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 122 PATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLP 157
P + T L +D L +N GP+P
Sbjct: 694 PQAMSALTMLTEID-----------LSNNNLSGPIP 718
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 99/235 (42%), Gaps = 43/235 (18%)
Query: 1 MPNLTKFTQLLFRSLDSNNMSGLLPL----ISSNLVYLGLSDNSFLGSISHFLCDKINET 56
M L K L L N SG LP +S++L+ L LS N+F G I LC N
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ--NPK 393
Query: 57 KRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFL----VWLDL 112
L+ L L +N G++P + L L LS N G +P+S GSL+ L +WL++
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 113 --GK------------------NRLFGTIPATLKNCTALESLD-------------VERF 139
G+ N L G IP+ L NCT L + + R
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 140 SRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVTTN 194
+ +L L +N F G +P D L LD+ N +G IP + +G + N
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 79/192 (41%), Gaps = 61/192 (31%)
Query: 59 LEALKLNDNYLQGELPDCWMSD-QNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRL 117
L + L++N L GE+P W+ +NL ILKLSNN F GN+P G L+WLDL N
Sbjct: 492 LNWISLSNNRLTGEIPK-WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550
Query: 118 FGTIPATL--------------------------KNCTA------LESLDVERFSR---- 141
GTIPA + K C + + E+ +R
Sbjct: 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610
Query: 142 -----------------------MVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSG 178
M+ L++ N G +P + L IL++ N++SG
Sbjct: 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670
Query: 179 AIPNYINNVTGM 190
+IP+ + ++ G+
Sbjct: 671 SIPDEVGDLRGL 682
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 85/188 (45%), Gaps = 22/188 (11%)
Query: 2 PNLTKFTQLLFRSLDSNNMSGLLP--LIS-SNLVYLGLSDNSFLGSISHFLCDKINETKR 58
P L+ ++L+ L N +SG +P L S S L L L N G I ++ K
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ----ELMYVKT 467
Query: 59 LEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLF 118
LE L L+ N L GE+P + NL + LSNN+ G +P G L L L L N
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527
Query: 119 GTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSG 178
G IPA L +C +L + L+L +N F+G +P Q IA N ++G
Sbjct: 528 GNIPAELGDCRSL-----------IWLDLNTNLFNGTIPAAM----FKQSGKIAANFIAG 572
Query: 179 AIPNYINN 186
YI N
Sbjct: 573 KRYVYIKN 580
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 91/182 (50%), Gaps = 28/182 (15%)
Query: 29 SNLVYLGLSDNS--FLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCW-MSDQ--NL 83
S L +L +S N+ F G +S L K+N LE L L+ N + G W +SD L
Sbjct: 126 SGLKFLNVSSNTLDFPGKVSGGL--KLNS---LEVLDLSANSISGANVVGWVLSDGCGEL 180
Query: 84 KILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVER----- 138
K L +S NK G++ S L +LD+ N IP L +C+AL+ LD+
Sbjct: 181 KHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG 237
Query: 139 -FSRMV-------VLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGM 190
FSR + +LN+ SN+F GP+P L LQ L +A+N +G IP++++
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDT 295
Query: 191 VT 192
+T
Sbjct: 296 LT 297
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 83 LKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRM 142
+ L +S N G +P GS+ +L L+LG N + G+IP + + L
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN---------- 683
Query: 143 VVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIP 181
+L+L SNK G +P L +L +D+++NNLSG IP
Sbjct: 684 -ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 74/153 (48%), Gaps = 19/153 (12%)
Query: 30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLS 89
NL +L +S N+F I FL D L+ L ++ N L G+ + LK+L +S
Sbjct: 201 NLEFLDVSSNNFSTGIP-FLGD----CSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255
Query: 90 NNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKN-CTALESLDVERFSRMVVLNLR 148
+N+F+G +P L L +L L +N+ G IP L C L LD L
Sbjct: 256 SNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD-----------LS 302
Query: 149 SNKFHGPLPTRFCDLAILQILDIADNNLSGAIP 181
N F+G +P F ++L+ L ++ NN SG +P
Sbjct: 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%)
Query: 45 ISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSL 104
+S ++ +I L L L N + G +PD + L IL LS+NK G +P + +L
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703
Query: 105 AFLVWLDLGKNRLFGTIP 122
L +DL N L G IP
Sbjct: 704 TMLTEIDLSNNNLSGPIP 721
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 90/235 (38%), Gaps = 66/235 (28%)
Query: 4 LTKFTQLLFRSLDSNNMSGLLPLISS---NLVYLGLSDNSFLGSISHFLCDKINETKRLE 60
L+ T L + SL +N ++G +P NL L LS+NSF G+I L D + L
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD----CRSLI 541
Query: 61 ALKLNDNYLQGELPDCWMSDQNLKILK--------------------------------- 87
L LN N G +P M Q+ KI
Sbjct: 542 WLDLNTNLFNGTIPAA-MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600
Query: 88 --------------LSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALES 133
+++ + G+ +F + +++LD+ N L G IP
Sbjct: 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK---------- 650
Query: 134 LDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVT 188
++ + +LNL N G +P DL L ILD++ N L G IP ++ +T
Sbjct: 651 -EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 62 LKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTI 121
L ++ N L G +P S L IL L +N G++P+ G L L LDL N+L G I
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 122 PATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLP 157
P + T L +D L +N GP+P
Sbjct: 697 PQAMSALTMLTEID-----------LSNNNLSGPIP 721
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 91/193 (47%), Gaps = 15/193 (7%)
Query: 2 PNLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEA 61
P + K TQL + + N+SG +P S + L D S+ ++S L I+ L
Sbjct: 95 PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY-NALSGTLPPSISSLPNLVG 153
Query: 62 LKLNDNYLQGELPDCWMSDQNL-KILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRL--- 117
+ + N + G +PD + S L + +S N+ G +P +F +L L ++DL +N L
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD 212
Query: 118 ----FGTIPAT-----LKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQI 168
FG+ T KN A + V + L+LR+N+ +G LP L L
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272
Query: 169 LDIADNNLSGAIP 181
L+++ NNL G IP
Sbjct: 273 LNVSFNNLCGEIP 285
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 16/149 (10%)
Query: 30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLS 89
N +Y+G N+ +G I I + +L L + + G +PD + L L S
Sbjct: 79 NFLYIG-GINNLVGPIP----PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133
Query: 90 NNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRS 149
N G LP S SL LV + NR+ G IP + + + L F+ M +
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL-------FTSMTI---SR 183
Query: 150 NKFHGPLPTRFCDLAILQILDIADNNLSG 178
N+ G +P F +L L +D++ N L G
Sbjct: 184 NRLTGKIPPTFANLN-LAFVDLSRNMLEG 211
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 15/141 (10%)
Query: 121 IPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAI 180
IP++L N L L + + +V GP+P L L L I N+SGAI
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLV----------GPIPPAIAKLTQLHYLYITHTNVSGAI 117
Query: 181 PNYINNVTGMVTTNSFSRSAQQHLHVP----LDVDVILMEKASVVSREEVVEYNEILNLV 236
P++++ + +VT + FS +A P L V + + +S Y L
Sbjct: 118 PDFLSQIKTLVTLD-FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF 176
Query: 237 MVTIVSRNDLLKNVPLEVRNL 257
+SRN L +P NL
Sbjct: 177 TSMTISRNRLTGKIPPTFANL 197
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.9 bits (76), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 89/201 (44%), Gaps = 22/201 (10%)
Query: 77 WMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTI-PATLKNCTALESLD 135
+ S +NL IL L +N G +F L L LDL N + P T + L +L
Sbjct: 51 FQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLH 110
Query: 136 VERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNY----INNVTGMV 191
++R + L F G LA LQ L + DNNL A+P+ + N+T +
Sbjct: 111 LDRCG---LQELGPGLFRG--------LAALQYLYLQDNNLQ-ALPDNTFRDLGNLTHLF 158
Query: 192 TTNSFSRSAQQHLHVPL-DVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNV 250
+ S +H L +D +L+ + + V+R + ++ L+ + + + N L +
Sbjct: 159 LHGNRIPSVPEHAFRGLHSLDRLLLHQ-NHVARVHPHAFRDLGRLMTLYLFANN--LSML 215
Query: 251 PLEV-RNLKATQSLNFSHNTF 270
P EV L++ Q L + N +
Sbjct: 216 PAEVLVPLRSLQYLRLNDNPW 236
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 53 INETKRLEALKLNDNYLQGE-LPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLD 111
N LE LK+ N Q LPD + +NL L LS + P +F SL+ L L+
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 112 LGKNRLFGTIPATLKNCTALESLD 135
+ N F K +L+ LD
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLD 524
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 47/115 (40%), Gaps = 15/115 (13%)
Query: 53 INETKRLEALKLNDNYLQGE-LPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLD 111
N LE LK+ N Q LPD + +NL L LS + P +F SL+ L L+
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 112 LGKNRLFGTIPATLKNCTALESLD-------------VERF-SRMVVLNLRSNKF 152
+ N F K +L+ LD ++ F S + LNL N F
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 53 INETKRLEALKLNDNYLQGE-LPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLD 111
N LE LK+ N Q LPD + +NL L LS + P +F SL+ L L+
Sbjct: 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524
Query: 112 LGKNRLFGTIPATLKNCTALESLD 135
+ N F K +L+ LD
Sbjct: 525 MSHNNFFSLDTFPYKCLNSLQVLD 548
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
Query: 101 FGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRF 160
FG L LV L+L +N+L G P E S + L L NK F
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAF-----------EGASHIQELQLGENKIKEISNKMF 98
Query: 161 CDLAILQILDIADNNLSGAIPNYINNVTGMVTTN 194
L L+ L++ DN +S +P ++ + + N
Sbjct: 99 LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 53 INETKRLEALKLNDNYLQGE-LPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLD 111
N LE LK+ N Q LPD + +NL L LS + P +F SL+ L L+
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 112 LGKNRLFGTIPATLKNCTALESL 134
+ N+L T+L+ +
Sbjct: 501 MASNQLKSVPDGIFDRLTSLQKI 523
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 60 EALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLP-NSFGSLAFLVWLDLGKNRL 117
+ L L+DN + P + S NLK L L +N+ +G LP F SL L LDLG N+L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQL 100
>pdb|1P7T|B Chain B, Structure Of Escherichia Coli Malate Synthase
G:pyruvate:acetyl- Coenzyme A Abortive Ternary Complex
At 1.95 Angstrom Resolution
Length = 731
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 54/143 (37%), Gaps = 11/143 (7%)
Query: 41 FLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNS 100
LG + L +K+ + R KLND+ +S +L + N + +P
Sbjct: 290 LLGLMQGTLQEKMEKNGRQIVRKLNDDRHYTAADGSEISLHGRSLLFIRNVGHLMTIP-- 347
Query: 101 FGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRF 160
++W G G + + AL L V++ SR + + K HGP F
Sbjct: 348 ------VIWDSEGNEIPEGILDGVMTGAIALYDLKVQKNSRTGSVYIVKPKMHGPQEVAF 401
Query: 161 CD---LAILQILDIADNNLSGAI 180
+ I +L +A N L I
Sbjct: 402 ANKLFTRIETMLGMAPNTLKMGI 424
>pdb|1Y8B|A Chain A, Solution Nmr-Derived Global Fold Of Malate Synthase G From
E.Coli
Length = 731
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 54/143 (37%), Gaps = 11/143 (7%)
Query: 41 FLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNS 100
LG + L +K+ + R KLND+ +S +L + N + +P
Sbjct: 290 LLGLMQGTLQEKMEKNGRQIVRKLNDDRHYTAADGSEISLHGRSLLFIRNVGHLMTIP-- 347
Query: 101 FGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRF 160
++W G G + + AL L V++ SR + + K HGP F
Sbjct: 348 ------VIWDSEGNEIPEGILDGVMTGAIALYDLKVQKNSRTGSVYIVKPKMHGPQEVAF 401
Query: 161 CD---LAILQILDIADNNLSGAI 180
+ I +L +A N L I
Sbjct: 402 ANKLFTRIETMLGMAPNTLKMGI 424
>pdb|1P7T|A Chain A, Structure Of Escherichia Coli Malate Synthase
G:pyruvate:acetyl- Coenzyme A Abortive Ternary Complex
At 1.95 Angstrom Resolution
Length = 731
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 54/143 (37%), Gaps = 11/143 (7%)
Query: 41 FLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNS 100
LG + L +K+ + R KLND+ +S +L + N + +P
Sbjct: 290 LLGLMQGTLQEKMEKNGRQIVRKLNDDRHYTAADGSEISLHGRSLLFIRNVGHLMTIP-- 347
Query: 101 FGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRF 160
++W G G + + AL L V++ SR + + K HGP F
Sbjct: 348 ------VIWDSEGNEIPEGILDGVMTGAIALYDLKVQKNSRTGSVYIVKPKMHGPQEVAF 401
Query: 161 CD---LAILQILDIADNNLSGAI 180
+ I +L +A N L I
Sbjct: 402 ANKLFTRIETMLGMAPNTLKMGI 424
>pdb|2JQX|A Chain A, Solution Structure Of Malate Synthase G From Joint
Refinement Against Nmr And Saxs Data
Length = 723
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 54/143 (37%), Gaps = 11/143 (7%)
Query: 41 FLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNS 100
LG + L +K+ + R KLND+ +S +L + N + +P
Sbjct: 290 LLGLMQGTLQEKMEKNGRQIVRKLNDDRHYTAADGSEISLHGRSLLFIRNVGHLMTIP-- 347
Query: 101 FGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRF 160
++W G G + + AL L V++ SR + + K HGP F
Sbjct: 348 ------VIWDSEGNEIPEGILDGVMTGAIALYDLKVQKNSRTGSVYIVKPKMHGPQEVAF 401
Query: 161 CD---LAILQILDIADNNLSGAI 180
+ I +L +A N L I
Sbjct: 402 ANKLFTRIETMLGMAPNTLKMGI 424
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 13/103 (12%)
Query: 81 QNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTI-PATLKNCTALESLDVERF 139
+NL IL L +N +F LA L LDL N ++ PAT L +L ++R
Sbjct: 55 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 114
Query: 140 SRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPN 182
+ L F G LA LQ L + DN L A+P+
Sbjct: 115 G---LQELGPGLFRG--------LAALQYLYLQDNALQ-ALPD 145
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 13/103 (12%)
Query: 81 QNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTI-PATLKNCTALESLDVERF 139
+NL IL L +N +F LA L LDL N ++ PAT L +L ++R
Sbjct: 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115
Query: 140 SRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPN 182
+ L F G LA LQ L + DN L A+P+
Sbjct: 116 G---LQELGPGLFRG--------LAALQYLYLQDNALQ-ALPD 146
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 11/124 (8%)
Query: 16 DSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINET-KRLEALKLNDNYLQGELP 74
D N +GL S++ +L LS + F+ S++ ++ ET K L+ L L N +
Sbjct: 256 DQNTFAGL---ARSSVRHLDLS-HGFVFSLN----SRVFETLKDLKVLNLAYNKINKIAD 307
Query: 75 DCWMSDQNLKILKLSNNKFIGNLPNS-FGSLAFLVWLDLGKNRLFGTIPATLKNCTALES 133
+ + NL++L LS N +G L +S F L + ++DL KN + T K L++
Sbjct: 308 EAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366
Query: 134 LDVE 137
LD+
Sbjct: 367 LDLR 370
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 15/91 (16%)
Query: 113 GKNRLFGTIPATLKNCTALESLDV-------------ERFSRMVVLNLRSNKFHGPLPTR 159
G++R F +IP+ L A++SLD+ + + VL L+S++ +
Sbjct: 38 GRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA 95
Query: 160 FCDLAILQILDIADNNLSGAIPNYINNVTGM 190
F L L+ LD++DN+LS ++ ++ +
Sbjct: 96 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 126
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 15/91 (16%)
Query: 113 GKNRLFGTIPATLKNCTALESLDV-------------ERFSRMVVLNLRSNKFHGPLPTR 159
G++R F +IP+ L A++SLD+ + + VL L+S++ +
Sbjct: 12 GRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA 69
Query: 160 FCDLAILQILDIADNNLSGAIPNYINNVTGM 190
F L L+ LD++DN+LS ++ ++ +
Sbjct: 70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%)
Query: 51 DKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWL 110
D+ LE L+LN+N + P + + NL+ L L +N+ F L+ L L
Sbjct: 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109
Query: 111 DLGKNRLFGTIPATLKNCTALESLDV 136
D+ +N++ + ++ L+SL+V
Sbjct: 110 DISENKIVILLDYMFQDLYNLKSLEV 135
>pdb|3UYI|A Chain A, Crystal Structure Of Perakine Reductase, Founder Member Of
A Novel Akr Subfamily With Unique Conformational Changes
During Nadph Binding
Length = 337
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 26 LISSNLVYLGLSDNSFLGSISHFLCDKINETK----RLEALKLNDNYLQGELPDCWMSDQ 81
L + + L +NS L S F+ + + + K R+EAL +L W+ Q
Sbjct: 212 LFAGKAIKESLPENSVLTSHPRFVGENLEKNKQIYYRIEALSQKHGCTPVQLALAWVLHQ 271
Query: 82 NLKILKLSNNKFIGNLPNSFGSL 104
++ + I NL N+ G+L
Sbjct: 272 GEDVVPIPGTTKIKNLHNNVGAL 294
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 83/231 (35%), Gaps = 52/231 (22%)
Query: 12 FRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQG 71
F SL + + L S L L L+ N IS D + LE L L N +
Sbjct: 369 FTSLRTLTNETFVSLAHSPLHILNLTKNK----ISKIESDAFSWLGHLEVLDLGLNEIGQ 424
Query: 72 ELP-DCWMSDQNL--------KILKLSNNKF------------------IGNLPNSFGSL 104
EL W +N+ K L+L+ N F + + P+ F L
Sbjct: 425 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 484
Query: 105 AFLVWLDLGKNRLFGTIPATLKNCTALESLDVER---------------------FSRMV 143
L LDL N + L+ LE LD++ S +
Sbjct: 485 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 544
Query: 144 VLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVTTN 194
+LNL SN F F DL L+I+D+ NNL+ + NN + + N
Sbjct: 545 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 595
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 83/231 (35%), Gaps = 52/231 (22%)
Query: 12 FRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQG 71
F SL + + L S L L L+ N IS D + LE L L N +
Sbjct: 374 FTSLRTLTNETFVSLAHSPLHILNLTKNK----ISKIESDAFSWLGHLEVLDLGLNEIGQ 429
Query: 72 ELP-DCWMSDQNL--------KILKLSNNKF------------------IGNLPNSFGSL 104
EL W +N+ K L+L+ N F + + P+ F L
Sbjct: 430 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 489
Query: 105 AFLVWLDLGKNRLFGTIPATLKNCTALESLDVER---------------------FSRMV 143
L LDL N + L+ LE LD++ S +
Sbjct: 490 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 549
Query: 144 VLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVTTN 194
+LNL SN F F DL L+I+D+ NNL+ + NN + + N
Sbjct: 550 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 600
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 83/231 (35%), Gaps = 52/231 (22%)
Query: 12 FRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQG 71
F SL + + L S L L L+ N IS D + LE L L N +
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNK----ISKIESDAFSWLGHLEVLDLGLNEIGQ 419
Query: 72 ELP-DCWMSDQNL--------KILKLSNNKF------------------IGNLPNSFGSL 104
EL W +N+ K L+L+ N F + + P+ F L
Sbjct: 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479
Query: 105 AFLVWLDLGKNRLFGTIPATLKNCTALESLDVER---------------------FSRMV 143
L LDL N + L+ LE LD++ S +
Sbjct: 480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539
Query: 144 VLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVTTN 194
+LNL SN F F DL L+I+D+ NNL+ + NN + + N
Sbjct: 540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 590
>pdb|2UZZ|A Chain A, X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (Mtox)
pdb|2UZZ|B Chain B, X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (Mtox)
pdb|2UZZ|C Chain C, X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (Mtox)
pdb|2UZZ|D Chain D, X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (Mtox)
Length = 372
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 50/108 (46%), Gaps = 13/108 (12%)
Query: 8 TQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDN 67
Q+L+ L +N + + S ++ LG +D++FL +++H E +L KL+
Sbjct: 67 AQMLWDELSRHNEDDPI-FVRSGVINLGPADSTFLANVAH-----SAEQWQLNVEKLDAQ 120
Query: 68 YLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKN 115
+ P+ + D + + + +++ F+ + LA W+ L K
Sbjct: 121 GIMARWPEIRVPDNYIGLFE-TDSGFLRS------ELAIKTWIQLAKE 161
>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|E Chain E, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|C Chain C, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|B Chain B, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
Length = 402
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 109 WLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFC 161
W L N++ GT+ + L + LE LD++RF + K GP C
Sbjct: 24 WTALKPNQINGTVFSELDDEKILEDLDLDRFEELF-----KTKAQGPALDLIC 71
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 62 LKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNS-FGSLAFLVWLDLGKNRLFGT 120
L LN N +Q E+ +C + L L LS+N + LPN F + V LD+ + R+
Sbjct: 159 LWLNKNGIQ-EIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217
Query: 121 IPATLKNCTALES 133
L+N L +
Sbjct: 218 PSYGLENLKKLRA 230
>pdb|3V0S|A Chain A, Crystal Structure Of Perakine Reductase, Founder Member Of
A Novel Akr Subfamily With Unique Conformational Changes
During Nadph Binding
Length = 337
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 36 LSDNSFLGSISHFLCDKINETK----RLEALKLNDNYLQGELPDCWMSDQNLKILKLSNN 91
L +NS L S F+ + + + K R+EAL +L W+ Q ++ +
Sbjct: 221 LPENSVLTSHPRFVGENLEKNKQIYYRIEALSQKHGCTPVQLALAWVLHQGEDVVPIPGT 280
Query: 92 KFIGNLPNSFGSL 104
I NL N+ G+L
Sbjct: 281 TKIKNLHNNVGAL 293
>pdb|3V0U|A Chain A, Crystal Structure Of Perakine Reductase, Founder Member Of
A Novel Akr Subfamily With Unique Conformational Changes
During Nadph Binding
Length = 338
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 36 LSDNSFLGSISHFLCDKINETK----RLEALKLNDNYLQGELPDCWMSDQNLKILKLSNN 91
L +NS L S F+ + + + K R+EAL +L W+ Q ++ +
Sbjct: 222 LPENSVLTSHPRFVGENLEKNKQIYYRIEALSQKHGCTPVQLALAWVLHQGEDVVPIPGT 281
Query: 92 KFIGNLPNSFGSL 104
I NL N+ G+L
Sbjct: 282 TKIKNLHNNVGAL 294
>pdb|3V0T|A Chain A, Crystal Structure Of Perakine Reductase, Founder Member Of
A Novel Akr Subfamily With Unique Conformational Changes
During Nadph Binding
Length = 337
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 36 LSDNSFLGSISHFLCDKINETK----RLEALKLNDNYLQGELPDCWMSDQNLKILKLSNN 91
L +NS L S F+ + + + K R+EAL +L W+ Q ++ +
Sbjct: 221 LPENSVLTSHPRFVGENLEKNKQIYYRIEALSQKHGCTPVQLALAWVLHQGEDVVPIPGT 280
Query: 92 KFIGNLPNSFGSL 104
I NL N+ G+L
Sbjct: 281 TKIKNLHNNVGAL 293
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,235,740
Number of Sequences: 62578
Number of extensions: 281787
Number of successful extensions: 773
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 597
Number of HSP's gapped (non-prelim): 133
length of query: 271
length of database: 14,973,337
effective HSP length: 97
effective length of query: 174
effective length of database: 8,903,271
effective search space: 1549169154
effective search space used: 1549169154
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)