Query 043038
Match_columns 271
No_of_seqs 152 out of 1799
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 12:11:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043038.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043038hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 3.4E-27 7.4E-32 225.7 15.5 184 3-192 88-288 (968)
2 PLN00113 leucine-rich repeat r 99.9 3.2E-27 7E-32 225.8 13.2 182 6-191 138-335 (968)
3 KOG4194 Membrane glycoprotein 99.9 1.9E-25 4.1E-30 190.7 1.5 258 4-270 145-428 (873)
4 KOG0444 Cytoskeletal regulator 99.9 1.4E-23 3.1E-28 180.9 -0.2 252 4-268 74-372 (1255)
5 KOG4194 Membrane glycoprotein 99.9 2.1E-22 4.5E-27 172.3 5.8 254 6-270 100-404 (873)
6 KOG0472 Leucine-rich repeat pr 99.8 5.2E-23 1.1E-27 168.8 -3.4 110 155-271 426-541 (565)
7 KOG0444 Cytoskeletal regulator 99.8 5E-22 1.1E-26 171.5 1.3 247 3-263 98-391 (1255)
8 KOG0472 Leucine-rich repeat pr 99.8 1.5E-21 3.2E-26 160.4 -8.8 224 10-271 47-288 (565)
9 PRK15387 E3 ubiquitin-protein 99.7 2.8E-17 6.1E-22 150.0 14.1 225 8-271 222-458 (788)
10 PRK15370 E3 ubiquitin-protein 99.7 8.6E-17 1.9E-21 147.3 13.7 213 9-271 200-428 (754)
11 KOG0617 Ras suppressor protein 99.7 3.5E-19 7.5E-24 130.9 -2.4 167 2-188 27-196 (264)
12 PLN03210 Resistant to P. syrin 99.7 2.5E-16 5.5E-21 152.4 16.5 251 7-269 610-904 (1153)
13 KOG0617 Ras suppressor protein 99.7 2.3E-19 5E-24 131.8 -3.9 160 56-258 32-196 (264)
14 KOG0618 Serine/threonine phosp 99.7 2.1E-18 4.7E-23 154.6 -0.6 38 231-269 449-487 (1081)
15 KOG4237 Extracellular matrix p 99.6 1.5E-17 3.3E-22 136.6 -1.3 211 29-270 67-358 (498)
16 PRK15387 E3 ubiquitin-protein 99.6 2.6E-15 5.5E-20 137.3 11.9 221 9-271 202-435 (788)
17 cd00116 LRR_RI Leucine-rich re 99.6 1.3E-16 2.7E-21 134.5 2.7 114 6-119 21-151 (319)
18 KOG0618 Serine/threonine phosp 99.6 1.7E-16 3.7E-21 142.6 2.3 254 6-270 43-395 (1081)
19 PRK15370 E3 ubiquitin-protein 99.6 5.7E-15 1.2E-19 135.5 11.8 220 8-271 178-401 (754)
20 PLN03210 Resistant to P. syrin 99.6 9.7E-15 2.1E-19 141.6 13.8 170 3-184 553-744 (1153)
21 cd00116 LRR_RI Leucine-rich re 99.6 1.4E-16 3E-21 134.3 0.9 148 30-177 24-206 (319)
22 KOG4237 Extracellular matrix p 99.4 2.5E-15 5.4E-20 123.7 -3.9 123 36-177 53-177 (498)
23 KOG0532 Leucine-rich repeat (L 99.4 2.7E-14 5.9E-19 122.6 -3.6 173 29-271 75-247 (722)
24 KOG1909 Ran GTPase-activating 99.3 9E-14 2E-18 112.9 -1.2 175 3-177 25-254 (382)
25 PF14580 LRR_9: Leucine-rich r 99.1 7E-11 1.5E-15 89.7 5.4 125 30-172 20-148 (175)
26 COG4886 Leucine-rich repeat (L 99.1 1.1E-10 2.4E-15 101.4 6.7 192 33-270 97-289 (394)
27 KOG0532 Leucine-rich repeat (L 99.1 2.7E-12 5.8E-17 110.6 -4.6 163 10-184 77-253 (722)
28 COG4886 Leucine-rich repeat (L 99.0 1.8E-10 3.8E-15 100.1 4.9 167 5-181 113-294 (394)
29 PLN03150 hypothetical protein; 99.0 7.5E-10 1.6E-14 101.1 9.0 109 58-177 419-528 (623)
30 PLN03150 hypothetical protein; 99.0 9.2E-10 2E-14 100.6 8.7 94 82-186 419-512 (623)
31 PF14580 LRR_9: Leucine-rich r 99.0 5.2E-10 1.1E-14 85.0 4.8 106 56-177 18-126 (175)
32 KOG1259 Nischarin, modulator o 99.0 1.1E-10 2.3E-15 93.8 0.8 39 232-270 372-411 (490)
33 PF13855 LRR_8: Leucine rich r 98.9 1.4E-09 3.1E-14 68.2 3.8 59 58-116 2-60 (61)
34 KOG3207 Beta-tubulin folding c 98.9 1.8E-10 3.8E-15 96.6 -0.7 197 56-271 120-339 (505)
35 KOG1259 Nischarin, modulator o 98.9 1.9E-10 4.1E-15 92.4 -0.8 127 30-177 285-412 (490)
36 KOG1909 Ran GTPase-activating 98.9 4.5E-10 9.7E-15 91.7 1.3 174 4-177 54-283 (382)
37 KOG3207 Beta-tubulin folding c 98.8 7.1E-10 1.5E-14 93.0 -0.7 168 6-177 144-339 (505)
38 PF13855 LRR_8: Leucine rich r 98.8 6.8E-09 1.5E-13 65.0 3.6 61 29-93 1-61 (61)
39 KOG4658 Apoptotic ATPase [Sign 98.7 3.7E-08 8.1E-13 92.6 6.6 129 3-136 518-649 (889)
40 COG5238 RNA1 Ran GTPase-activa 98.6 4.8E-08 1E-12 77.7 4.9 172 6-178 28-256 (388)
41 KOG0531 Protein phosphatase 1, 98.5 2.6E-08 5.6E-13 87.1 1.0 106 4-118 91-199 (414)
42 KOG0531 Protein phosphatase 1, 98.5 4.6E-08 1E-12 85.5 1.7 189 30-271 73-268 (414)
43 KOG1859 Leucine-rich repeat pr 98.4 4E-08 8.7E-13 87.7 -0.6 103 57-177 164-267 (1096)
44 KOG1859 Leucine-rich repeat pr 98.3 2.7E-08 5.9E-13 88.7 -4.0 152 4-176 105-291 (1096)
45 KOG2120 SCF ubiquitin ligase, 98.3 2.1E-08 4.6E-13 80.7 -5.1 86 30-118 186-273 (419)
46 PF12799 LRR_4: Leucine Rich r 98.2 6.4E-07 1.4E-11 51.7 1.6 37 234-271 1-37 (44)
47 COG5238 RNA1 Ran GTPase-activa 98.2 3E-07 6.5E-12 73.3 0.3 148 28-177 29-198 (388)
48 KOG4658 Apoptotic ATPase [Sign 98.1 5.6E-06 1.2E-10 78.2 6.9 130 28-175 522-653 (889)
49 KOG2120 SCF ubiquitin ligase, 98.1 5.3E-08 1.2E-12 78.4 -6.3 85 82-177 186-273 (419)
50 KOG4579 Leucine-rich repeat (L 98.0 7.3E-07 1.6E-11 63.9 -1.2 36 82-118 78-113 (177)
51 PF12799 LRR_4: Leucine Rich r 98.0 8E-06 1.7E-10 47.1 3.2 35 59-94 3-37 (44)
52 KOG4579 Leucine-rich repeat (L 97.9 7.8E-07 1.7E-11 63.8 -1.8 110 8-124 27-141 (177)
53 PRK15386 type III secretion pr 97.9 4.5E-05 9.7E-10 65.4 7.7 74 5-92 49-123 (426)
54 KOG1644 U2-associated snRNP A' 97.9 5E-05 1.1E-09 58.2 6.4 83 30-118 43-126 (233)
55 KOG3665 ZYG-1-like serine/thre 97.6 3.4E-05 7.5E-10 71.2 3.2 149 9-170 123-281 (699)
56 KOG1644 U2-associated snRNP A' 97.5 0.0002 4.3E-09 54.9 5.1 127 31-174 21-150 (233)
57 KOG2982 Uncharacterized conser 97.4 5.5E-05 1.2E-09 61.4 1.3 62 56-117 70-133 (418)
58 KOG3665 ZYG-1-like serine/thre 97.3 3.1E-05 6.7E-10 71.5 -2.1 107 57-176 122-232 (699)
59 PRK15386 type III secretion pr 97.1 0.00067 1.4E-08 58.4 4.9 13 165-177 157-169 (426)
60 KOG2982 Uncharacterized conser 97.1 0.00012 2.5E-09 59.6 -0.0 85 29-115 71-156 (418)
61 KOG2123 Uncharacterized conser 96.5 0.00012 2.5E-09 59.0 -4.2 98 29-135 19-123 (388)
62 KOG2739 Leucine-rich acidic nu 96.4 0.0025 5.3E-08 50.9 2.5 60 57-118 43-104 (260)
63 PF13306 LRR_5: Leucine rich r 96.3 0.014 2.9E-07 42.0 6.1 57 56-114 11-67 (129)
64 KOG2739 Leucine-rich acidic nu 96.2 0.0028 6.1E-08 50.6 1.9 85 28-118 42-129 (260)
65 KOG2123 Uncharacterized conser 96.1 0.00021 4.5E-09 57.6 -4.9 76 56-136 18-95 (388)
66 PF13306 LRR_5: Leucine rich r 95.9 0.033 7.1E-07 39.9 6.2 59 55-115 33-91 (129)
67 PF00560 LRR_1: Leucine Rich R 95.2 0.009 2E-07 28.6 0.9 11 84-94 3-13 (22)
68 PF00560 LRR_1: Leucine Rich R 95.2 0.014 3E-07 27.9 1.4 18 166-184 2-19 (22)
69 KOG4308 LRR-containing protein 95.0 0.00013 2.8E-09 64.5 -10.5 40 31-70 89-128 (478)
70 KOG4308 LRR-containing protein 94.4 0.00062 1.4E-08 60.3 -7.8 161 10-178 89-276 (478)
71 KOG1947 Leucine rich repeat pr 94.0 0.0075 1.6E-07 53.6 -2.0 184 7-190 187-389 (482)
72 PF13504 LRR_7: Leucine rich r 93.9 0.042 9.2E-07 24.4 1.4 14 258-271 1-14 (17)
73 PF13516 LRR_6: Leucine Rich r 91.4 0.027 5.8E-07 27.5 -1.2 21 234-254 2-22 (24)
74 KOG1947 Leucine rich repeat pr 90.3 0.088 1.9E-06 46.8 0.1 146 5-153 211-375 (482)
75 KOG0473 Leucine-rich repeat pr 89.8 0.0058 1.3E-07 48.2 -6.7 84 28-118 41-124 (326)
76 KOG3864 Uncharacterized conser 89.2 0.12 2.6E-06 40.0 0.1 83 82-173 102-185 (221)
77 smart00370 LRR Leucine-rich re 89.1 0.36 7.8E-06 23.8 1.8 13 141-153 3-15 (26)
78 smart00369 LRR_TYP Leucine-ric 89.1 0.36 7.8E-06 23.8 1.8 13 141-153 3-15 (26)
79 KOG3864 Uncharacterized conser 88.7 0.039 8.5E-07 42.6 -2.8 34 233-266 150-184 (221)
80 smart00365 LRR_SD22 Leucine-ri 88.6 0.41 8.9E-06 23.9 1.8 15 257-271 1-15 (26)
81 smart00368 LRR_RI Leucine rich 84.8 0.84 1.8E-05 23.1 1.8 14 258-271 2-15 (28)
82 KOG0473 Leucine-rich repeat pr 78.9 0.047 1E-06 43.3 -6.2 79 55-136 40-118 (326)
83 smart00364 LRR_BAC Leucine-ric 72.9 2.4 5.1E-05 21.1 1.1 14 258-271 2-15 (26)
84 smart00367 LRR_CC Leucine-rich 72.4 2.6 5.7E-05 20.7 1.3 13 257-269 1-13 (26)
85 KOG4341 F-box protein containi 62.2 5.2 0.00011 34.9 1.8 62 56-117 293-358 (483)
86 KOG4341 F-box protein containi 52.2 12 0.00027 32.7 2.4 151 7-170 293-458 (483)
87 KOG3763 mRNA export factor TAP 43.5 15 0.00033 33.3 1.7 63 28-94 217-283 (585)
88 KOG3763 mRNA export factor TAP 42.9 17 0.00037 32.9 2.0 61 56-118 217-283 (585)
89 KOG4242 Predicted myosin-I-bin 24.9 58 0.0012 29.2 2.2 37 233-269 439-479 (553)
90 PF05725 FNIP: FNIP Repeat; I 22.3 1.5E+02 0.0033 16.4 3.0 31 29-65 12-42 (44)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=3.4e-27 Score=225.66 Aligned_cols=184 Identities=35% Similarity=0.540 Sum_probs=117.0
Q ss_pred CccCCCcccEEECcCCCCCCCcccc----CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCcccc
Q 043038 3 NLTKFTQLLFRSLDSNNMSGLLPLI----SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWM 78 (271)
Q Consensus 3 ~~~~~~~L~~L~l~~n~~~~~~~~~----~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 78 (271)
++.++++|+.|++++|.+.+.+|.. +.+|++|++++|.+++.+|.. .++.|++|++++|.+++..|..+.
T Consensus 88 ~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~------~l~~L~~L~Ls~n~~~~~~p~~~~ 161 (968)
T PLN00113 88 AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG------SIPNLETLDLSNNMLSGEIPNDIG 161 (968)
T ss_pred HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCcc------ccCCCCEEECcCCcccccCChHHh
Confidence 3667788888888888887766653 457778888877776655531 255666666666666655666666
Q ss_pred CCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec-------------CCCCcccEE
Q 043038 79 SDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV-------------ERFSRMVVL 145 (271)
Q Consensus 79 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l-------------~~~~~L~~L 145 (271)
.+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..++.+++|+.|++ ..+++|++|
T Consensus 162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 241 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241 (968)
T ss_pred cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence 6666666666666665556666666666666666666665556666666666666655 334456666
Q ss_pred EeccCccCCCCchhhhcCccccEEeccCCccceecCcccccccCCcc
Q 043038 146 NLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT 192 (271)
Q Consensus 146 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 192 (271)
++++|.+++..|..+..+++|+.|++++|.+.+.+|..+.++++|+.
T Consensus 242 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 288 (968)
T PLN00113 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS 288 (968)
T ss_pred ECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCE
Confidence 66666666556666666666666666666665555555555555544
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=3.2e-27 Score=225.80 Aligned_cols=182 Identities=31% Similarity=0.453 Sum_probs=90.6
Q ss_pred CCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCC
Q 043038 6 KFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQN 82 (271)
Q Consensus 6 ~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 82 (271)
.+++|++|++++|.+.+..|.. +++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+..|..+..+++
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~----l~~L~~L~L~~n~l~~~~p~~l~~l~~ 213 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN----LTSLEFLTLASNQLVGQIPRELGQMKS 213 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhh----CcCCCeeeccCCCCcCcCChHHcCcCC
Confidence 3555666666666655555543 345556666665555444443332 555555555555555445555555555
Q ss_pred CCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec-------------CCCCcccEEEecc
Q 043038 83 LKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV-------------ERFSRMVVLNLRS 149 (271)
Q Consensus 83 L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l-------------~~~~~L~~L~l~~ 149 (271)
|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++ ..+++|+.|++++
T Consensus 214 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 293 (968)
T PLN00113 214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293 (968)
T ss_pred ccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcC
Confidence 555555555555444555555555555555555554444544555555554444 1223444444444
Q ss_pred CccCCCCchhhhcCccccEEeccCCccceecCcccccccCCc
Q 043038 150 NKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMV 191 (271)
Q Consensus 150 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 191 (271)
|.+++.+|..+..+++|+.|++++|.+.+..|..+..++.|+
T Consensus 294 n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 335 (968)
T PLN00113 294 NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQ 335 (968)
T ss_pred CeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCC
Confidence 444444444444444444444444444444444444333333
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=1.9e-25 Score=190.65 Aligned_cols=258 Identities=17% Similarity=0.126 Sum_probs=168.0
Q ss_pred ccCCCcccEEECcCCCCCCCccccCC---CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCC
Q 043038 4 LTKFTQLLFRSLDSNNMSGLLPLISS---NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSD 80 (271)
Q Consensus 4 ~~~~~~L~~L~l~~n~~~~~~~~~~~---~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 80 (271)
++.++.|+.||++.|.|+.....+++ +++.|++++|.++..-.. .|..+.+|..|.|+.|.++...+..|+.+
T Consensus 145 L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~----~F~~lnsL~tlkLsrNrittLp~r~Fk~L 220 (873)
T KOG4194|consen 145 LSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETG----HFDSLNSLLTLKLSRNRITTLPQRSFKRL 220 (873)
T ss_pred HHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccc----cccccchheeeecccCcccccCHHHhhhc
Confidence 44455666666666666544333333 677777777777652222 23346677777777777774555567777
Q ss_pred CCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec-------------CCCCcccEEEe
Q 043038 81 QNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV-------------ERFSRMVVLNL 147 (271)
Q Consensus 81 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l-------------~~~~~L~~L~l 147 (271)
++|+.|++.+|+|.-.---.|..+++|+.+.+.+|.+..--.+.++.+..+++|++ .+++.|++|++
T Consensus 221 ~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~l 300 (873)
T KOG4194|consen 221 PKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDL 300 (873)
T ss_pred chhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhcc
Confidence 77777777777776221234666777777777777766333445666777777776 45667888888
Q ss_pred ccCccCCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhcee---
Q 043038 148 RSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASV--- 220 (271)
Q Consensus 148 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~--- 220 (271)
++|.|....++.+...+.|+.|++++|+++...+..+..+..|.. .|.++.+ +.....-...+..+++
T Consensus 301 S~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l-----~e~af~~lssL~~LdLr~N 375 (873)
T KOG4194|consen 301 SYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHL-----AEGAFVGLSSLHKLDLRSN 375 (873)
T ss_pred chhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHH-----HhhHHHHhhhhhhhcCcCC
Confidence 888888777888888888888888888888555566665665555 5555543 2222211112222211
Q ss_pred ---ccccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCC
Q 043038 221 ---VSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTF 270 (271)
Q Consensus 221 ---~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 270 (271)
+..+.....+.++++|+.|++.+|++-.+....|.+++.|++||+.+|.|
T Consensus 376 ~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 376 ELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred eEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence 12233444556799999999999998665556889999999999999876
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=1.4e-23 Score=180.89 Aligned_cols=252 Identities=23% Similarity=0.272 Sum_probs=142.0
Q ss_pred ccCCCcccEEECcCCCCC--CCcccc--CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCc-ccc
Q 043038 4 LTKFTQLLFRSLDSNNMS--GLLPLI--SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPD-CWM 78 (271)
Q Consensus 4 ~~~~~~L~~L~l~~n~~~--~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~ 78 (271)
++.++.|+.+++..|.+. |.++.. +..|++|++++|+++. +|..+.. .+++-+|++|+|+|. .+|. -|.
T Consensus 74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E-vP~~LE~----AKn~iVLNLS~N~Ie-tIPn~lfi 147 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE-VPTNLEY----AKNSIVLNLSYNNIE-TIPNSLFI 147 (1255)
T ss_pred hccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhh-cchhhhh----hcCcEEEEcccCccc-cCCchHHH
Confidence 455666666777666665 333333 3577778888888764 6655554 567777888888877 4444 355
Q ss_pred CCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec----------------------
Q 043038 79 SDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV---------------------- 136 (271)
Q Consensus 79 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l---------------------- 136 (271)
++..|-.||+++|++. .+|+.+..+..|++|.+++|.+.-.--..+..+++|+.|.+
T Consensus 148 nLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~d 226 (1255)
T KOG0444|consen 148 NLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRD 226 (1255)
T ss_pred hhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhh
Confidence 6777777888888877 56666777777777777777764211122233333333333
Q ss_pred ---------------CCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccc
Q 043038 137 ---------------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFS 197 (271)
Q Consensus 137 ---------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~ 197 (271)
..+++|..|++++|+|+ .+......|.++++|+++.|+++ .+|+++.+++.|+. .|.++
T Consensus 227 vDlS~N~Lp~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 227 VDLSENNLPIVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred ccccccCCCcchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccc
Confidence 22344555555555554 33334444555555556666655 66666666666665 33332
Q ss_pred cccccccccccchhh-hhhhhceeccccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCC
Q 043038 198 RSAQQHLHVPLDVDV-ILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHN 268 (271)
Q Consensus 198 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 268 (271)
-. .+|.....-. .............+|+-...|..|+.|.|+.|++.. +|+.+--++-|++||+..|
T Consensus 305 Fe---GiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 305 FE---GIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred cc---CCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCC
Confidence 21 1333322111 111222333344455555566666666666666543 6666666666666666655
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=2.1e-22 Score=172.26 Aligned_cols=254 Identities=22% Similarity=0.253 Sum_probs=147.9
Q ss_pred CCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCC
Q 043038 6 KFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQN 82 (271)
Q Consensus 6 ~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 82 (271)
++++|+.+++.+|.++. +|.. ..+++.|++.+|.+...-.+.+. -++.|++||||.|.|+..--..|..-.+
T Consensus 100 nl~nLq~v~l~~N~Lt~-IP~f~~~sghl~~L~L~~N~I~sv~se~L~----~l~alrslDLSrN~is~i~~~sfp~~~n 174 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELTR-IPRFGHESGHLEKLDLRHNLISSVTSEELS----ALPALRSLDLSRNLISEIPKPSFPAKVN 174 (873)
T ss_pred cCCcceeeeeccchhhh-cccccccccceeEEeeeccccccccHHHHH----hHhhhhhhhhhhchhhcccCCCCCCCCC
Confidence 44444444554444442 2221 22455555555554432222222 2445555555555555222223333345
Q ss_pred CCEEEccCCcccccCCcccccCCCccEEEccCCccccccCc-cccCCCCccEEec-------------------------
Q 043038 83 LKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPA-TLKNCTALESLDV------------------------- 136 (271)
Q Consensus 83 L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~-~~~~l~~L~~L~l------------------------- 136 (271)
+++|+++.|+|+..-.+.|..+.+|..+.+++|+++ .+|. .+..+++|+.|++
T Consensus 175 i~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq 253 (873)
T KOG4194|consen 175 IKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ 253 (873)
T ss_pred ceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence 555555555555444445555555555555555555 3332 3333555555544
Q ss_pred ------------CCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----cccccccc
Q 043038 137 ------------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSA 200 (271)
Q Consensus 137 ------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~ 200 (271)
..+.+++.|+++.|.++..-..++..+..|+.|++++|.|....++..+.++.|.. .|.+...+
T Consensus 254 rN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~ 333 (873)
T KOG4194|consen 254 RNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLD 333 (873)
T ss_pred hcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCC
Confidence 44567777888888877555667778888888888888888667777776666665 66676643
Q ss_pred ccccccccchhhhhhhhceecccc--ch-hhHHHHHhhHhhhhhcCCcccc---cccHhhhccCCCCEEEccCCCC
Q 043038 201 QQHLHVPLDVDVILMEKASVVSRE--EV-VEYNEILNLVMVTIVSRNDLLK---NVPLEVRNLKATQSLNFSHNTF 270 (271)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~l~~n~i 270 (271)
. ........++.+.+.... .+ .-.+.++.+|+.|||+.|.+.. +....|.+++.|+.|++.||+|
T Consensus 334 ~-----~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNql 404 (873)
T KOG4194|consen 334 E-----GSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQL 404 (873)
T ss_pred h-----hHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCcee
Confidence 3 333334444444333221 11 2335688999999999999753 3566788999999999999986
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=5.2e-23 Score=168.83 Aligned_cols=110 Identities=21% Similarity=0.214 Sum_probs=68.2
Q ss_pred CCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchh-hhhhhhceeccccch-hh
Q 043038 155 PLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVD-VILMEKASVVSREEV-VE 228 (271)
Q Consensus 155 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~ 228 (271)
.+|..++.+++|..|++++|-+. .+|..++.+..|+. .|.+... |.....- ............+.+ ++
T Consensus 426 fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~l-----P~~~y~lq~lEtllas~nqi~~vd~~ 499 (565)
T KOG0472|consen 426 FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRML-----PECLYELQTLETLLASNNQIGSVDPS 499 (565)
T ss_pred cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccccc-----hHHHhhHHHHHHHHhccccccccChH
Confidence 44555666677777777777665 66666666666555 3333331 2111100 001111111122222 23
Q ss_pred HHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038 229 YNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271 (271)
Q Consensus 229 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 271 (271)
-.+.+.+|..|||.+|.+. .+|.++++|.+|++|++.||.|.
T Consensus 500 ~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 500 GLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 2578999999999999996 59999999999999999999874
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=5e-22 Score=171.49 Aligned_cols=247 Identities=26% Similarity=0.290 Sum_probs=185.2
Q ss_pred CccCCCcccEEECcCCCCCCCccccC---CCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccC
Q 043038 3 NLTKFTQLLFRSLDSNNMSGLLPLIS---SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMS 79 (271)
Q Consensus 3 ~~~~~~~L~~L~l~~n~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 79 (271)
.|-++..|+.||+++|.+.. .|..+ +++-+|++++|.+.. ||..++- ++..|-.|++|+|++. .+|.-+..
T Consensus 98 diF~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~Iet-IPn~lfi---nLtDLLfLDLS~NrLe-~LPPQ~RR 171 (1255)
T KOG0444|consen 98 DIFRLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIET-IPNSLFI---NLTDLLFLDLSNNRLE-MLPPQIRR 171 (1255)
T ss_pred hhcccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCcccc-CCchHHH---hhHhHhhhccccchhh-hcCHHHHH
Confidence 35678889999999999975 44443 588899999999975 7766553 4677888899999988 67777788
Q ss_pred CCCCCEEEccCCccc-------------------------ccCCcccccCCCccEEEccCCccccccCccccCCCCccEE
Q 043038 80 DQNLKILKLSNNKFI-------------------------GNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESL 134 (271)
Q Consensus 80 l~~L~~L~l~~n~~~-------------------------~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L 134 (271)
+..|+.|++++|.+. .-+|.++..+.+|..++++.|.+. ..|+.+..+++|+.|
T Consensus 172 L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrL 250 (1255)
T KOG0444|consen 172 LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRL 250 (1255)
T ss_pred HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhhee
Confidence 888888888888652 114555666778999999999988 889999999999999
Q ss_pred ec------------CCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccc-eecCcccccccCCcc----ccccc
Q 043038 135 DV------------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS-GAIPNYINNVTGMVT----TNSFS 197 (271)
Q Consensus 135 ~l------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~----~n~~~ 197 (271)
++ +.+.+|++|+++.|+++ .+|..+++++.|+.|.+.+|+++ .-+|+-++++.+|.. .|.+.
T Consensus 251 NLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE 329 (1255)
T KOG0444|consen 251 NLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE 329 (1255)
T ss_pred ccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc
Confidence 88 55678999999999998 89999999999999999999986 246888999988887 44444
Q ss_pred cccccccccccchhhhhhhhceec--cccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEE
Q 043038 198 RSAQQHLHVPLDVDVILMEKASVV--SREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSL 263 (271)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 263 (271)
- .|..+. .+..+..+.+. ..-..|+.+.-++-|..||+..|.-.-..|..-..-++|+.-
T Consensus 330 l-----VPEglc-RC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefY 391 (1255)
T KOG0444|consen 330 L-----VPEGLC-RCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFY 391 (1255)
T ss_pred c-----Cchhhh-hhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCCcchhhhcceee
Confidence 3 333322 22333333333 344567888889999999999988543344433333444443
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.76 E-value=1.5e-21 Score=160.41 Aligned_cols=224 Identities=26% Similarity=0.337 Sum_probs=124.3
Q ss_pred ccEEECcCCCCCCCcccc--CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEE
Q 043038 10 LLFRSLDSNNMSGLLPLI--SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILK 87 (271)
Q Consensus 10 L~~L~l~~n~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 87 (271)
+..+++++|.+....+.. +..+.++++++|.+.. .|.++.. +..++.++.++|++. .+|..+..+..+..++
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~-lp~aig~----l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQ-LPAAIGE----LEALKSLNVSHNKLS-ELPEQIGSLISLVKLD 120 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccchhhh-CCHHHHH----HHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence 344555555555433332 3455556666665554 3333332 445555555555555 5555555555555555
Q ss_pred ccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec------------CCCCcccEEEeccCccCCC
Q 043038 88 LSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV------------ERFSRMVVLNLRSNKFHGP 155 (271)
Q Consensus 88 l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l------------~~~~~L~~L~l~~n~l~~~ 155 (271)
.++|.+. .+++.++.+-.+..++..+|.+. ..|++++.+.++..+++ -.++.|+++|...|.++ .
T Consensus 121 ~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-t 197 (565)
T KOG0472|consen 121 CSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-T 197 (565)
T ss_pred cccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-c
Confidence 5555554 44445555555555555555555 45555555444443333 11334556667777775 6
Q ss_pred CchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceeccccchhhHHH
Q 043038 156 LPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNE 231 (271)
Q Consensus 156 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (271)
+|+.++.+..|..|++..|++. ++| .|+.|+.|.. .|.+.. +|+.. .+
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~-----lpae~---------------------~~ 249 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEM-----LPAEH---------------------LK 249 (565)
T ss_pred CChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHh-----hHHHH---------------------hc
Confidence 7778888888888888888886 666 6777776665 344443 22111 12
Q ss_pred HHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038 232 ILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271 (271)
Q Consensus 232 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 271 (271)
.++++..||+++|++. ++|++++-+++|+.||+|+|.||
T Consensus 250 ~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is 288 (565)
T KOG0472|consen 250 HLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS 288 (565)
T ss_pred ccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc
Confidence 4455555666666653 46666666666666666666553
No 9
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.74 E-value=2.8e-17 Score=149.96 Aligned_cols=225 Identities=22% Similarity=0.254 Sum_probs=144.9
Q ss_pred CcccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEE
Q 043038 8 TQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILK 87 (271)
Q Consensus 8 ~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 87 (271)
.+++.|++.+|.++. +|..+++|++|++++|.++. +|.. .++|++|++++|.++ .+|..+ ..|+.|+
T Consensus 222 ~~L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~Lts-LP~l-------p~sL~~L~Ls~N~L~-~Lp~lp---~~L~~L~ 288 (788)
T PRK15387 222 AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTS-LPVL-------PPGLLELSIFSNPLT-HLPALP---SGLCKLW 288 (788)
T ss_pred cCCCEEEccCCcCCC-CCCCCCCCcEEEecCCccCc-ccCc-------ccccceeeccCCchh-hhhhch---hhcCEEE
Confidence 368899999998885 56667899999999999885 4532 357788888888877 455432 4577788
Q ss_pred ccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec-----C----CCCcccEEEeccCccCCCCch
Q 043038 88 LSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV-----E----RFSRMVVLNLRSNKFHGPLPT 158 (271)
Q Consensus 88 l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l-----~----~~~~L~~L~l~~n~l~~~~~~ 158 (271)
+++|+++ .+|.. .++|+.|++++|.+. .+|..... |+.|++ . ...+|+.|++++|++++ +|.
T Consensus 289 Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~-~Lp~lp~~---L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~ 359 (788)
T PRK15387 289 IFGNQLT-SLPVL---PPGLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-LPT 359 (788)
T ss_pred CcCCccc-ccccc---ccccceeECCCCccc-cCCCCccc---ccccccccCccccccccccccceEecCCCccCC-CCC
Confidence 8888877 44442 356888888888777 34442222 333333 1 11367888888888873 443
Q ss_pred hhhcCccccEEeccCCccceecCcccccccCCcc-ccccccccccccccccchhhhhhhhcee--ccccchhhHHHHHhh
Q 043038 159 RFCDLAILQILDIADNNLSGAIPNYINNVTGMVT-TNSFSRSAQQHLHVPLDVDVILMEKASV--VSREEVVEYNEILNL 235 (271)
Q Consensus 159 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 235 (271)
. ..+|+.|++++|++. .+|....++..|.. .|.+.+.+ .... .+..+.+ .....++. ...+
T Consensus 360 l---p~~L~~L~Ls~N~L~-~LP~l~~~L~~LdLs~N~Lt~LP-----~l~s----~L~~LdLS~N~LssIP~---l~~~ 423 (788)
T PRK15387 360 L---PSELYKLWAYNNRLT-SLPALPSGLKELIVSGNRLTSLP-----VLPS----ELKELMVSGNRLTSLPM---LPSG 423 (788)
T ss_pred C---Ccccceehhhccccc-cCcccccccceEEecCCcccCCC-----Cccc----CCCEEEccCCcCCCCCc---chhh
Confidence 2 245667777777776 45655444444443 55555422 1110 0111111 11122332 2346
Q ss_pred HhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038 236 VMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271 (271)
Q Consensus 236 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 271 (271)
|+.|++++|.+. .+|..+..+++|+.+++++|.|+
T Consensus 424 L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 424 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred hhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence 889999999996 59999999999999999999885
No 10
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.72 E-value=8.6e-17 Score=147.33 Aligned_cols=213 Identities=24% Similarity=0.363 Sum_probs=111.1
Q ss_pred cccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEc
Q 043038 9 QLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKL 88 (271)
Q Consensus 9 ~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 88 (271)
.++.|++++|.+....+..+++|+.|++++|.++. +|..++ ..|+.|++++|.++ .+|..+. .+|+.|++
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lts-LP~~l~------~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQGNIKTLYANSNQLTS-IPATLP------DTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred CCcEEEecCCCCCcCChhhccCCCEEECCCCcccc-CChhhh------ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 45666666666654332234466666666666653 443332 24666666666665 4554432 35666666
Q ss_pred cCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec----------CCCCcccEEEeccCccCCCCch
Q 043038 89 SNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV----------ERFSRMVVLNLRSNKFHGPLPT 158 (271)
Q Consensus 89 ~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l----------~~~~~L~~L~l~~n~l~~~~~~ 158 (271)
++|+++ .+|..+. ++|+.|++++|.++ .+|..+. ++|+.|++ ...++|+.|++++|.+++ +|.
T Consensus 270 s~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~ 342 (754)
T PRK15370 270 FHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPA 342 (754)
T ss_pred cCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccccCCccccccceeccccCCcccc-CCh
Confidence 666666 4444432 35666666666665 3443322 12222222 112345555555555542 333
Q ss_pred hhhcCccccEEeccCCccceecCcccc-cccCCcc-ccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhH
Q 043038 159 RFCDLAILQILDIADNNLSGAIPNYIN-NVTGMVT-TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLV 236 (271)
Q Consensus 159 ~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 236 (271)
.+. ++|+.|++++|+++ .+|..+. .+..|.. .|.+. .++.. ...+|
T Consensus 343 ~l~--~sL~~L~Ls~N~L~-~LP~~lp~~L~~LdLs~N~Lt---------------------------~LP~~--l~~sL 390 (754)
T PRK15370 343 SLP--PELQVLDVSKNQIT-VLPETLPPTITTLDVSRNALT---------------------------NLPEN--LPAAL 390 (754)
T ss_pred hhc--CcccEEECCCCCCC-cCChhhcCCcCEEECCCCcCC---------------------------CCCHh--HHHHH
Confidence 332 34555555555554 3333221 1111111 22222 12221 22479
Q ss_pred hhhhhcCCcccccccHhh----hccCCCCEEEccCCCCC
Q 043038 237 MVTIVSRNDLLKNVPLEV----RNLKATQSLNFSHNTFT 271 (271)
Q Consensus 237 ~~L~L~~n~l~~~~~~~l----~~l~~L~~L~l~~n~i~ 271 (271)
+.|++++|++.. +|..+ ..++.+..+++.+|.|+
T Consensus 391 ~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 391 QIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCcc
Confidence 999999999874 66654 44588999999999874
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=3.5e-19 Score=130.90 Aligned_cols=167 Identities=29% Similarity=0.413 Sum_probs=137.6
Q ss_pred CCccCCCcccEEECcCCCCCCCcccc--CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccC
Q 043038 2 PNLTKFTQLLFRSLDSNNMSGLLPLI--SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMS 79 (271)
Q Consensus 2 ~~~~~~~~L~~L~l~~n~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 79 (271)
|.+-++.+++.|.+++|.++.+.|.. +.+|+.|++.+|+++. .|..+.. +++|+.|+++.|++. ..|..|+.
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~-lp~~iss----l~klr~lnvgmnrl~-~lprgfgs 100 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE-LPTSISS----LPKLRILNVGMNRLN-ILPRGFGS 100 (264)
T ss_pred ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh-cChhhhh----chhhhheecchhhhh-cCccccCC
Confidence 45667788888999999998776654 6789999999999875 5555444 899999999999988 88999999
Q ss_pred CCCCCEEEccCCccc-ccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCch
Q 043038 80 DQNLKILKLSNNKFI-GNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPT 158 (271)
Q Consensus 80 l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~ 158 (271)
++.|+.||+++|.+. ...|+.|..++.|+.++++.|-+. .+|..++++++|+.|. +.+|.+- .+|.
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~-----------lrdndll-~lpk 167 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILS-----------LRDNDLL-SLPK 167 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEe-----------eccCchh-hCcH
Confidence 999999999988775 467888888899999999999888 7888888777666554 7788776 6899
Q ss_pred hhhcCccccEEeccCCccceecCccccccc
Q 043038 159 RFCDLAILQILDIADNNLSGAIPNYINNVT 188 (271)
Q Consensus 159 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 188 (271)
.++.+..|++|.+.+|+++ .+|..++++.
T Consensus 168 eig~lt~lrelhiqgnrl~-vlppel~~l~ 196 (264)
T KOG0617|consen 168 EIGDLTRLRELHIQGNRLT-VLPPELANLD 196 (264)
T ss_pred HHHHHHHHHHHhcccceee-ecChhhhhhh
Confidence 9999999999999999998 8888777654
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.71 E-value=2.5e-16 Score=152.44 Aligned_cols=251 Identities=22% Similarity=0.213 Sum_probs=130.8
Q ss_pred CCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCC
Q 043038 7 FTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNL 83 (271)
Q Consensus 7 ~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 83 (271)
+.+|+.|++.++.+.. +|.. +++|+.++++++.....+|. +..+++|+.|++++|.....+|..+..+++|
T Consensus 610 ~~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L 683 (1153)
T PLN03210 610 PENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSLVELPSSIQYLNKL 683 (1153)
T ss_pred ccCCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCccccchhhhccCCC
Confidence 4556666666665543 2221 34566666665543333332 2225555666665554323455555555555
Q ss_pred CEEEccCCcccccCCcccccCCCc---------------------cEEEccCCccccccCccccCCCCccEEecCC----
Q 043038 84 KILKLSNNKFIGNLPNSFGSLAFL---------------------VWLDLGKNRLFGTIPATLKNCTALESLDVER---- 138 (271)
Q Consensus 84 ~~L~l~~n~~~~~~~~~~~~l~~L---------------------~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~---- 138 (271)
+.|++++|.....+|..+ .+++| +.|++++|.+. .+|..+ .+++|+.|++..
T Consensus 684 ~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~ 760 (1153)
T PLN03210 684 EDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSE 760 (1153)
T ss_pred CEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc-cccccc-cccccccccccccchh
Confidence 555555543222333322 34444 44555555444 344332 244555554422
Q ss_pred ----------------CCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceecCcccccccCCcccccccccccc
Q 043038 139 ----------------FSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQ 202 (271)
Q Consensus 139 ----------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~~n~~~~~~~~ 202 (271)
+++|+.|++++|.....+|..++.+++|+.|++++|...+.+|..+ .+++|+..+.-......
T Consensus 761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~ 839 (1153)
T PLN03210 761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR 839 (1153)
T ss_pred hccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccc
Confidence 3578888998887666788889999999999999875434666654 45555441110000011
Q ss_pred ccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCC
Q 043038 203 HLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNT 269 (271)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 269 (271)
.+|... .+... ..+.......+|.....+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus 840 ~~p~~~-~nL~~-L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 840 TFPDIS-TNISD-LNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cccccc-cccCE-eECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 122110 00000 011111223445555667777777777755334466667777777777777763
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=2.3e-19 Score=131.85 Aligned_cols=160 Identities=30% Similarity=0.421 Sum_probs=98.5
Q ss_pred CCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEe
Q 043038 56 TKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLD 135 (271)
Q Consensus 56 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~ 135 (271)
+...+.|.+|+|+++ .+|..++.+.+|+.|++++|+++ ..|..+..+++|+.++++.|++. ..|.+++..+.|+
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le--- 105 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE--- 105 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh---
Confidence 555666666666666 55555666666666666666666 56666666666666666666666 5666666554433
Q ss_pred cCCCCcccEEEeccCccCC-CCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccch
Q 043038 136 VERFSRMVVLNLRSNKFHG-PLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDV 210 (271)
Q Consensus 136 l~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~ 210 (271)
.||+++|.+.+ .+|..|..+..|+.|.+++|.+. .+|..++++.+|+. .|.+-.
T Consensus 106 --------vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~------------ 164 (264)
T KOG0617|consen 106 --------VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS------------ 164 (264)
T ss_pred --------hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh------------
Confidence 33355555542 45666666666666666666665 56666666665554 111111
Q ss_pred hhhhhhhceeccccchhhHHHHHhhHhhhhhcCCcccccccHhhhccC
Q 043038 211 DVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLK 258 (271)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 258 (271)
.+...+.++.|+.|++.+|+++ .+|.++..+.
T Consensus 165 ---------------lpkeig~lt~lrelhiqgnrl~-vlppel~~l~ 196 (264)
T KOG0617|consen 165 ---------------LPKEIGDLTRLRELHIQGNRLT-VLPPELANLD 196 (264)
T ss_pred ---------------CcHHHHHHHHHHHHhcccceee-ecChhhhhhh
Confidence 1222356788899999999986 5777776543
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.69 E-value=2.1e-18 Score=154.56 Aligned_cols=38 Identities=26% Similarity=0.248 Sum_probs=25.7
Q ss_pred HHHhhHhhhhhcCCccccc-ccHhhhccCCCCEEEccCCC
Q 043038 231 EILNLVMVTIVSRNDLLKN-VPLEVRNLKATQSLNFSHNT 269 (271)
Q Consensus 231 ~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~ 269 (271)
..++.|+.+|++.|++... +|...-. ++|++||++||.
T Consensus 449 ~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 449 AQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred hhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 4677788888888887643 3332222 788888888874
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.64 E-value=1.5e-17 Score=136.60 Aligned_cols=211 Identities=19% Similarity=0.203 Sum_probs=128.6
Q ss_pred CCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccC-CcccccCCcccccCCCc
Q 043038 29 SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSN-NKFIGNLPNSFGSLAFL 107 (271)
Q Consensus 29 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L 107 (271)
+..+.+++..|+|+...+.+ |+.+++|+.+++++|.|+...|.+|.++..+..|-+.+ |+|+....+.|.++.++
T Consensus 67 ~~tveirLdqN~I~~iP~~a----F~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGA----FKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred CcceEEEeccCCcccCChhh----ccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 46677777777776533333 33477777777777777766777777777655554444 77764433445455444
Q ss_pred cE------------------------EEccCCccccccCc-cccCCCCccEEec-------------------------C
Q 043038 108 VW------------------------LDLGKNRLFGTIPA-TLKNCTALESLDV-------------------------E 137 (271)
Q Consensus 108 ~~------------------------l~l~~n~l~~~~~~-~~~~l~~L~~L~l-------------------------~ 137 (271)
+. |.+..|.++ .++. .+..+.+++.+.+ +
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets 221 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS 221 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence 44 444444444 2222 3333444443333 0
Q ss_pred C----------------------CCcccEE---EeccCccCCCC-chhhhcCccccEEeccCCccceecCcccccccCCc
Q 043038 138 R----------------------FSRMVVL---NLRSNKFHGPL-PTRFCDLAILQILDIADNNLSGAIPNYINNVTGMV 191 (271)
Q Consensus 138 ~----------------------~~~L~~L---~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 191 (271)
+ ...++.+ -.+.+...+.- ...|..+++|+.+++++|+++..-+.+|+....++
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~ 301 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQ 301 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhh
Confidence 0 0001111 01111122122 24577899999999999999977778887776665
Q ss_pred c----ccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccC
Q 043038 192 T----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSH 267 (271)
Q Consensus 192 ~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 267 (271)
. .|.+... ....+.++..|+.|+|.+|+|+..-|..|..+..|..|++-.
T Consensus 302 eL~L~~N~l~~v--------------------------~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 302 ELYLTRNKLEFV--------------------------SSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLS 355 (498)
T ss_pred hhhcCcchHHHH--------------------------HHHhhhccccceeeeecCCeeEEEecccccccceeeeeehcc
Confidence 5 3444332 122345788899999999999988899999999999999988
Q ss_pred CCC
Q 043038 268 NTF 270 (271)
Q Consensus 268 n~i 270 (271)
|.+
T Consensus 356 Np~ 358 (498)
T KOG4237|consen 356 NPF 358 (498)
T ss_pred Ccc
Confidence 764
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=2.6e-15 Score=137.29 Aligned_cols=221 Identities=22% Similarity=0.251 Sum_probs=144.5
Q ss_pred cccEEECcCCCCCCCcccc-CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEE
Q 043038 9 QLLFRSLDSNNMSGLLPLI-SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILK 87 (271)
Q Consensus 9 ~L~~L~l~~n~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 87 (271)
.-..|+++++.+.. +|.. .++++.|++.+|.++. +|.. .++|++|++++|+++ .+|.. .++|+.|+
T Consensus 202 ~~~~LdLs~~~Lts-LP~~l~~~L~~L~L~~N~Lt~-LP~l-------p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~ 268 (788)
T PRK15387 202 GNAVLNVGESGLTT-LPDCLPAHITTLVIPDNNLTS-LPAL-------PPELRTLEVSGNQLT-SLPVL---PPGLLELS 268 (788)
T ss_pred CCcEEEcCCCCCCc-CCcchhcCCCEEEccCCcCCC-CCCC-------CCCCcEEEecCCccC-cccCc---ccccceee
Confidence 35678999999985 5554 4689999999999986 5532 578999999999999 56643 46899999
Q ss_pred ccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecC---------CCCcccEEEeccCccCCCCch
Q 043038 88 LSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVE---------RFSRMVVLNLRSNKFHGPLPT 158 (271)
Q Consensus 88 l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~---------~~~~L~~L~l~~n~l~~~~~~ 158 (271)
+++|.+. .+|.. .++|+.|++++|.++ .+|.. .++|+.|+++ ...+|+.|++++|.++ .+|.
T Consensus 269 Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~-~LP~ 339 (788)
T PRK15387 269 IFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLT-SLPT 339 (788)
T ss_pred ccCCchh-hhhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCccccCCCCcccccccccccCccc-cccc
Confidence 9999988 55543 357889999999998 56653 3557777761 1235777788888886 3443
Q ss_pred hhhcCccccEEeccCCccceecCcccccccCCcc-ccccccccccccccccchhhhhhhhceec--cccchhhHHHHHhh
Q 043038 159 RFCDLAILQILDIADNNLSGAIPNYINNVTGMVT-TNSFSRSAQQHLHVPLDVDVILMEKASVV--SREEVVEYNEILNL 235 (271)
Q Consensus 159 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 235 (271)
. ..+|+.|++++|+++ .+|....++..|.. .|.+... |.... .+..+++. ....++. ..++
T Consensus 340 l---p~~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~L-----P~l~~----~L~~LdLs~N~Lt~LP~---l~s~ 403 (788)
T PRK15387 340 L---PSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSL-----PALPS----GLKELIVSGNRLTSLPV---LPSE 403 (788)
T ss_pred c---ccccceEecCCCccC-CCCCCCcccceehhhccccccC-----ccccc----ccceEEecCCcccCCCC---cccC
Confidence 1 247888999999988 56665555555544 5555542 21110 01111111 1111221 1246
Q ss_pred HhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038 236 VMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271 (271)
Q Consensus 236 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 271 (271)
|+.|++++|.+.+ +|... .+|+.|++++|+|+
T Consensus 404 L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt 435 (788)
T PRK15387 404 LKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT 435 (788)
T ss_pred CCEEEccCCcCCC-CCcch---hhhhhhhhccCccc
Confidence 7777777777754 55432 35667777777764
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.62 E-value=1.3e-16 Score=134.51 Aligned_cols=114 Identities=30% Similarity=0.230 Sum_probs=74.2
Q ss_pred CCCcccEEECcCCCCCCC----cccc---CCCccEEEccCCcccc--ccchhhhhhccCCCcccEEEccCcccCCCCCcc
Q 043038 6 KFTQLLFRSLDSNNMSGL----LPLI---SSNLVYLGLSDNSFLG--SISHFLCDKINETKRLEALKLNDNYLQGELPDC 76 (271)
Q Consensus 6 ~~~~L~~L~l~~n~~~~~----~~~~---~~~L~~L~l~~n~~~~--~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 76 (271)
.+..|+.++++++.+.+. ++.. .++++.++++++.+.. .....+...+..+++|+.|++++|.+....+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 455688888888887542 2222 3468888888887752 112233344555788888888888886545555
Q ss_pred ccCCCC---CCEEEccCCccccc----CCcccccC-CCccEEEccCCcccc
Q 043038 77 WMSDQN---LKILKLSNNKFIGN----LPNSFGSL-AFLVWLDLGKNRLFG 119 (271)
Q Consensus 77 ~~~l~~---L~~L~l~~n~~~~~----~~~~~~~l-~~L~~l~l~~n~l~~ 119 (271)
+..+.. |++|++++|.+++. +...+..+ ++|+.+++++|.+.+
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 151 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG 151 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCc
Confidence 554444 88888888887621 22234455 788888888888773
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.61 E-value=1.7e-16 Score=142.58 Aligned_cols=254 Identities=25% Similarity=0.251 Sum_probs=155.3
Q ss_pred CCCcccEEECcCCCCCCCcccc--CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCC
Q 043038 6 KFTQLLFRSLDSNNMSGLLPLI--SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNL 83 (271)
Q Consensus 6 ~~~~L~~L~l~~n~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 83 (271)
+.-+|++||+++|.+...+-.. +.+|+.|+++.|.+.. .|.... ++.+|+++.+.+|.+. ..|..+..+.+|
T Consensus 43 ~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~-vp~s~~----~~~~l~~lnL~~n~l~-~lP~~~~~lknl 116 (1081)
T KOG0618|consen 43 KRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRS-VPSSCS----NMRNLQYLNLKNNRLQ-SLPASISELKNL 116 (1081)
T ss_pred heeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhh-Cchhhh----hhhcchhheeccchhh-cCchhHHhhhcc
Confidence 3445899999999887543222 4588999999998865 553333 4888999999999988 788888899999
Q ss_pred CEEEccCCcccccCCcccccCCC-------------------ccEEEccCCccccccCccccCCCCccEEec--------
Q 043038 84 KILKLSNNKFIGNLPNSFGSLAF-------------------LVWLDLGKNRLFGTIPATLKNCTALESLDV-------- 136 (271)
Q Consensus 84 ~~L~l~~n~~~~~~~~~~~~l~~-------------------L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l-------- 136 (271)
++|+++.|.+. ..|..+..++. .+.+++..|.+.+.++..+..++. .+++
T Consensus 117 ~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~ 193 (1081)
T KOG0618|consen 117 QYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVL 193 (1081)
T ss_pred cccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhh
Confidence 99999999886 44444333332 333333334443334444433332 1222
Q ss_pred --------------------------------------------CCCCcccEEEeccCccCCCCchhhhcCccccEEecc
Q 043038 137 --------------------------------------------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIA 172 (271)
Q Consensus 137 --------------------------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 172 (271)
....+|++++++.|+++ .+|++++.+.+|..+++.
T Consensus 194 dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n 272 (1081)
T KOG0618|consen 194 DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNAN 272 (1081)
T ss_pred hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceEeccc
Confidence 22346888899999887 677999999999999999
Q ss_pred CCccceecCcccccccCCcc----ccccccccc------------------cccccccchhhhh-hhhce--eccccchh
Q 043038 173 DNNLSGAIPNYINNVTGMVT----TNSFSRSAQ------------------QHLHVPLDVDVIL-MEKAS--VVSREEVV 227 (271)
Q Consensus 173 ~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~------------------~~~~~~~~~~~~~-~~~~~--~~~~~~~~ 227 (271)
+|.++ .+|..+....+|+. .|.+..+.+ .++|..+...... +..+. .......+
T Consensus 273 ~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp 351 (1081)
T KOG0618|consen 273 HNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP 351 (1081)
T ss_pred chhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccc
Confidence 99886 66665544444443 222221111 0122211100000 00000 00111111
Q ss_pred hHH-HHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCC
Q 043038 228 EYN-EILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTF 270 (271)
Q Consensus 228 ~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 270 (271)
... ..++.|+.|.+.+|.+++.....+-++++|++|++++|++
T Consensus 352 ~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL 395 (1081)
T KOG0618|consen 352 SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL 395 (1081)
T ss_pred cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence 111 3456778888888888777777777888888888888865
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.60 E-value=5.7e-15 Score=135.46 Aligned_cols=220 Identities=21% Similarity=0.294 Sum_probs=131.4
Q ss_pred CcccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEE
Q 043038 8 TQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILK 87 (271)
Q Consensus 8 ~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 87 (271)
.+...|+++++.+...+....++++.|++++|.++. +|..++ .+|++|++++|.++ .+|..+. .+|+.|+
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~Lts-LP~~l~------~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIPEQITTLILDNNELKS-LPENLQ------GNIKTLYANSNQLT-SIPATLP--DTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcCcCCcccccCCcEEEecCCCCCc-CChhhc------cCCCEEECCCCccc-cCChhhh--ccccEEE
Confidence 356789999998885433334689999999999985 665442 58999999999998 6776553 5799999
Q ss_pred ccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCcccc
Q 043038 88 LSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQ 167 (271)
Q Consensus 88 l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 167 (271)
+++|.+. .+|..+. .+|+.|++++|.+. .+|..+. ++| +.|++++|.+++ +|..+. ..|+
T Consensus 248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL-----------~~L~Ls~N~Lt~-LP~~lp--~sL~ 307 (754)
T PRK15370 248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EEL-----------RYLSVYDNSIRT-LPAHLP--SGIT 307 (754)
T ss_pred CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCC-----------cEEECCCCcccc-Ccccch--hhHH
Confidence 9999998 6776664 58999999999998 5776543 234 455566666652 333222 2455
Q ss_pred EEeccCCccceecCccc-ccccCCcc-ccccccccccccccccchhhhhhhhcee--ccccchhhHHHHHhhHhhhhhcC
Q 043038 168 ILDIADNNLSGAIPNYI-NNVTGMVT-TNSFSRSAQQHLHVPLDVDVILMEKASV--VSREEVVEYNEILNLVMVTIVSR 243 (271)
Q Consensus 168 ~L~l~~n~l~~~~~~~~-~~~~~L~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~~L~L~~ 243 (271)
.|++++|.++ .+|..+ .++..|.. .|.+.+. |..+... +..+.+ +....++. ...++|+.|++++
T Consensus 308 ~L~Ls~N~Lt-~LP~~l~~sL~~L~Ls~N~Lt~L-----P~~l~~s---L~~L~Ls~N~L~~LP~--~lp~~L~~LdLs~ 376 (754)
T PRK15370 308 HLNVQSNSLT-ALPETLPPGLKTLEAGENALTSL-----PASLPPE---LQVLDVSKNQITVLPE--TLPPTITTLDVSR 376 (754)
T ss_pred HHHhcCCccc-cCCccccccceeccccCCccccC-----ChhhcCc---ccEEECCCCCCCcCCh--hhcCCcCEEECCC
Confidence 5666666655 333222 22222222 3333321 1110000 000000 00111111 1234677778887
Q ss_pred CcccccccHhhhccCCCCEEEccCCCCC
Q 043038 244 NDLLKNVPLEVRNLKATQSLNFSHNTFT 271 (271)
Q Consensus 244 n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 271 (271)
|.+.. +|..+.. .|+.|++++|+|+
T Consensus 377 N~Lt~-LP~~l~~--sL~~LdLs~N~L~ 401 (754)
T PRK15370 377 NALTN-LPENLPA--ALQIMQASRNNLV 401 (754)
T ss_pred CcCCC-CCHhHHH--HHHHHhhccCCcc
Confidence 77763 6665542 5777777777763
No 20
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.60 E-value=9.7e-15 Score=141.55 Aligned_cols=170 Identities=19% Similarity=0.260 Sum_probs=123.9
Q ss_pred CccCCCcccEEECcCCCCC------CCccccC----CCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCC
Q 043038 3 NLTKFTQLLFRSLDSNNMS------GLLPLIS----SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGE 72 (271)
Q Consensus 3 ~~~~~~~L~~L~l~~n~~~------~~~~~~~----~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 72 (271)
+|.+|++|+.|.+.++... ..+|..+ .+|+.|.+.++.++. +|..+. ..+|+.|++++|.+. .
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~-lP~~f~-----~~~L~~L~L~~s~l~-~ 625 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC-MPSNFR-----PENLVKLQMQGSKLE-K 625 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC-CCCcCC-----ccCCcEEECcCcccc-c
Confidence 4778999999998765422 2334332 378999999988765 555442 678999999999988 6
Q ss_pred CCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCC------------CC
Q 043038 73 LPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVER------------FS 140 (271)
Q Consensus 73 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~------------~~ 140 (271)
++..+..+++|+.++++++.....+| .+..+++|+.|++++|.....+|..+..+++|+.|++.. ++
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~ 704 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLK 704 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCC
Confidence 77888889999999999876443565 477889999999999876557888888888888888733 34
Q ss_pred cccEEEeccCccCCCCchhhhcCccccEEeccCCccceecCccc
Q 043038 141 RMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYI 184 (271)
Q Consensus 141 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 184 (271)
+|+.|++++|...+.+|.. ..+|+.|++++|.+. .+|..+
T Consensus 705 sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~ 744 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL 744 (1153)
T ss_pred CCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc
Confidence 6777777777544444432 346778888888776 556543
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.60 E-value=1.4e-16 Score=134.28 Aligned_cols=148 Identities=26% Similarity=0.227 Sum_probs=67.4
Q ss_pred CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCC------CCCccccCCCCCCEEEccCCcccccCCccccc
Q 043038 30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQG------ELPDCWMSDQNLKILKLSNNKFIGNLPNSFGS 103 (271)
Q Consensus 30 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 103 (271)
+++.++++++.++......++..+...+.++.++++++.+.. ..+..+..+++|+.|++++|.+....+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 455556655555432222333333344555555555555431 11233444555566666555554333333333
Q ss_pred CCC---ccEEEccCCccccc----cCccccCC-CCccEEec-----------------CCCCcccEEEeccCccCCC---
Q 043038 104 LAF---LVWLDLGKNRLFGT----IPATLKNC-TALESLDV-----------------ERFSRMVVLNLRSNKFHGP--- 155 (271)
Q Consensus 104 l~~---L~~l~l~~n~l~~~----~~~~~~~l-~~L~~L~l-----------------~~~~~L~~L~l~~n~l~~~--- 155 (271)
+.+ |+.+++++|.+.+. +...+..+ ++|+.+++ ..+++|+.|++++|.+++.
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 333 55566655554421 11223333 45555554 1223455555555555421
Q ss_pred -CchhhhcCccccEEeccCCccc
Q 043038 156 -LPTRFCDLAILQILDIADNNLS 177 (271)
Q Consensus 156 -~~~~~~~l~~L~~L~l~~n~l~ 177 (271)
++..+...+.|+.|++++|.++
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred HHHHHHHhCCCCCEEeccCCccC
Confidence 1122333345555555555553
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.44 E-value=2.5e-15 Score=123.73 Aligned_cols=123 Identities=23% Similarity=0.316 Sum_probs=90.6
Q ss_pred ccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccC-
Q 043038 36 LSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGK- 114 (271)
Q Consensus 36 l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~- 114 (271)
=++-.++ ++|..+| +.-.+++|..|+|+...+.+|+.+++|+.||++.|.|+.+.|+.|.++.++.++.+.+
T Consensus 53 Cr~~GL~-eVP~~LP------~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 53 CRGKGLT-EVPANLP------PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred ccCCCcc-cCcccCC------CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcC
Confidence 3344444 3777766 3678899999999977788999999999999999999988899999999999998877
Q ss_pred CccccccC-ccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccc
Q 043038 115 NRLFGTIP-ATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177 (271)
Q Consensus 115 n~l~~~~~-~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 177 (271)
|+++ .+| ..+.++.+++.|. +.-|++.....+.|..+++++.|.+.+|.+.
T Consensus 126 NkI~-~l~k~~F~gL~slqrLl-----------lNan~i~Cir~~al~dL~~l~lLslyDn~~q 177 (498)
T KOG4237|consen 126 NKIT-DLPKGAFGGLSSLQRLL-----------LNANHINCIRQDALRDLPSLSLLSLYDNKIQ 177 (498)
T ss_pred Cchh-hhhhhHhhhHHHHHHHh-----------cChhhhcchhHHHHHHhhhcchhcccchhhh
Confidence 8898 455 4667777776555 4444555444555555555555555555554
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.35 E-value=2.7e-14 Score=122.63 Aligned_cols=173 Identities=24% Similarity=0.436 Sum_probs=124.1
Q ss_pred CCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCcc
Q 043038 29 SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLV 108 (271)
Q Consensus 29 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 108 (271)
......+++.|.+. ++|..++. +..|+.+.+..|.+. .+|.+++.+..|+++|++.|++. ..|..++.++ |+
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~----f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lk 146 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACA----FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LK 146 (722)
T ss_pred cchhhhhccccccc-cCchHHHH----HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ce
Confidence 34556777777775 36666665 667777788888877 77777888888888888888887 6776777666 77
Q ss_pred EEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceecCccccccc
Q 043038 109 WLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVT 188 (271)
Q Consensus 109 ~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 188 (271)
-+.+++|+++ .+|+.++.... |..||.+.|.+. .+|.-++.+..|+.+++..|.+. .+|..+..++
T Consensus 147 vli~sNNkl~-~lp~~ig~~~t-----------l~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp 212 (722)
T KOG0532|consen 147 VLIVSNNKLT-SLPEEIGLLPT-----------LAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP 212 (722)
T ss_pred eEEEecCccc-cCCcccccchh-----------HHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc
Confidence 7778888877 67777764443 334557777775 56666777777777777777776 5555444322
Q ss_pred CCccccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCC
Q 043038 189 GMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHN 268 (271)
Q Consensus 189 ~L~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 268 (271)
|..||+++|++. .+|..|++|+.|++|-|.+|
T Consensus 213 -----------------------------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 213 -----------------------------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred -----------------------------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccC
Confidence 566888888885 58888888888888888888
Q ss_pred CCC
Q 043038 269 TFT 271 (271)
Q Consensus 269 ~i~ 271 (271)
.++
T Consensus 245 PLq 247 (722)
T KOG0532|consen 245 PLQ 247 (722)
T ss_pred CCC
Confidence 653
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.34 E-value=9e-14 Score=112.92 Aligned_cols=175 Identities=23% Similarity=0.209 Sum_probs=97.6
Q ss_pred CccCCCcccEEECcCCCCCCCcccc-------CCCccEEEccCCcc---ccccchh---hhhhccCCCcccEEEccCccc
Q 043038 3 NLTKFTQLLFRSLDSNNMSGLLPLI-------SSNLVYLGLSDNSF---LGSISHF---LCDKINETKRLEALKLNDNYL 69 (271)
Q Consensus 3 ~~~~~~~L~~L~l~~n~~~~~~~~~-------~~~L~~L~l~~n~~---~~~~~~~---~~~~~~~~~~L~~L~l~~n~l 69 (271)
.+..+..++.+++++|.+....... .+.|+..++++-.- ...+|.. +..++..+++|++++||.|.+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 3456777888899988876332211 23566666664322 2223332 334455566777778887777
Q ss_pred CCCCCcc----ccCCCCCCEEEccCCccccc-------------CCcccccCCCccEEEccCCcccccc----CccccCC
Q 043038 70 QGELPDC----WMSDQNLKILKLSNNKFIGN-------------LPNSFGSLAFLVWLDLGKNRLFGTI----PATLKNC 128 (271)
Q Consensus 70 ~~~~~~~----~~~l~~L~~L~l~~n~~~~~-------------~~~~~~~l~~L~~l~l~~n~l~~~~----~~~~~~l 128 (271)
....+.. ++.+..|++|++.+|.+... ........+.|+.+..++|++.+.. ...+...
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 6433333 34466777777777776511 1112234466777777777765321 1223333
Q ss_pred CCccEEec-----------------CCCCcccEEEeccCccCCC----CchhhhcCccccEEeccCCccc
Q 043038 129 TALESLDV-----------------ERFSRMVVLNLRSNKFHGP----LPTRFCDLAILQILDIADNNLS 177 (271)
Q Consensus 129 ~~L~~L~l-----------------~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~ 177 (271)
+.+..+.+ .++++|+.||+.+|.++.. +...++.|+.|+.+++++|.+.
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 44443333 4556666666777666532 2344556666777777766664
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.14 E-value=7e-11 Score=89.75 Aligned_cols=125 Identities=26% Similarity=0.303 Sum_probs=43.2
Q ss_pred CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCccc-ccCCCcc
Q 043038 30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSF-GSLAFLV 108 (271)
Q Consensus 30 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~ 108 (271)
.++.|++++|.++. +. .+. ..+.+|+.|++++|.|+ .+. .+..++.|+.|++++|+++ .+...+ ..+++|+
T Consensus 20 ~~~~L~L~~n~I~~-Ie-~L~---~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 20 KLRELNLRGNQIST-IE-NLG---ATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ 91 (175)
T ss_dssp ------------------S-----TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccc-cc-chh---hhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence 56778888888764 21 111 12567888888888887 443 4667788888888888887 443334 3578888
Q ss_pred EEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCC---chhhhcCccccEEecc
Q 043038 109 WLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPL---PTRFCDLAILQILDIA 172 (271)
Q Consensus 109 ~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~ 172 (271)
.|++++|.+.. +. .+..+ ..+++|+.|++.+|.++... ...+..+|+|+.||-.
T Consensus 92 ~L~L~~N~I~~-l~-~l~~L--------~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 92 ELYLSNNKISD-LN-ELEPL--------SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EEE-TTS---S-CC-CCGGG--------GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred EEECcCCcCCC-hH-HhHHH--------HcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 88888888762 21 12211 23456667778888876321 2346677888887753
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.12 E-value=1.1e-10 Score=101.37 Aligned_cols=192 Identities=29% Similarity=0.376 Sum_probs=123.7
Q ss_pred EEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCC-CCCEEEccCCcccccCCcccccCCCccEEE
Q 043038 33 YLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQ-NLKILKLSNNKFIGNLPNSFGSLAFLVWLD 111 (271)
Q Consensus 33 ~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~ 111 (271)
.+....+.+...+.... ..+.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..+..+++|+.|+
T Consensus 97 ~l~~~~~~~~~~~~~~~-----~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~ 169 (394)
T COG4886 97 SLDLNLNRLRSNISELL-----ELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLD 169 (394)
T ss_pred eeeccccccccCchhhh-----cccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccc
Confidence 46666666533222222 2567888888888887 6666655563 7888888888887 5555677788888888
Q ss_pred ccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceecCcccccccCCc
Q 043038 112 LGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMV 191 (271)
Q Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 191 (271)
++.|.+. .+|...+.. ++|+.|++++|+++ .+|........|+++.+++|.+. ..+..+.++..+.
T Consensus 170 l~~N~l~-~l~~~~~~~-----------~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~ 235 (394)
T COG4886 170 LSFNDLS-DLPKLLSNL-----------SNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLS 235 (394)
T ss_pred cCCchhh-hhhhhhhhh-----------hhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhccccc
Confidence 8888887 555544333 34556668888887 56655555666888888888543 4455555554443
Q ss_pred cccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCC
Q 043038 192 TTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTF 270 (271)
Q Consensus 192 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 270 (271)
... +... .....+...+.+++++.|++++|.+.. ++. +....+++.+++++|.+
T Consensus 236 ~l~-l~~n----------------------~~~~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 236 GLE-LSNN----------------------KLEDLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred ccc-cCCc----------------------eeeeccchhccccccceeccccccccc-ccc-ccccCccCEEeccCccc
Confidence 311 0000 000112333567778999999999865 444 88899999999998865
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.09 E-value=2.7e-12 Score=110.59 Aligned_cols=163 Identities=34% Similarity=0.491 Sum_probs=98.9
Q ss_pred ccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEE
Q 043038 10 LLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKIL 86 (271)
Q Consensus 10 L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 86 (271)
-...|++.|++... |.. |..|+.+.+..|.+.. +|..++. +..|..++++.|+++ ..|..++.++ |+.|
T Consensus 77 t~~aDlsrNR~~el-p~~~~~f~~Le~liLy~n~~r~-ip~~i~~----L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 77 TVFADLSRNRFSEL-PEEACAFVSLESLILYHNCIRT-IPEAICN----LEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred hhhhhccccccccC-chHHHHHHHHHHHHHHhcccee-cchhhhh----hhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 34567777877643 332 2355555555555543 4444443 555556666666655 4455444433 4555
Q ss_pred EccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec-----CC------CCcccEEEeccCccCCC
Q 043038 87 KLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV-----ER------FSRMVVLNLRSNKFHGP 155 (271)
Q Consensus 87 ~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l-----~~------~~~L~~L~l~~n~l~~~ 155 (271)
-+++|+++ .+|..++..+.|.+++++.|.+. .+|..++.+.+|+.|.+ .+ .-.|..||++.|++. .
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKIS-Y 225 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCcee-e
Confidence 56666655 45555555555556666666555 45555555555544433 00 113678889999998 7
Q ss_pred CchhhhcCccccEEeccCCccceecCccc
Q 043038 156 LPTRFCDLAILQILDIADNNLSGAIPNYI 184 (271)
Q Consensus 156 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 184 (271)
+|-.|.+++.|++|-|.+|.+. ..|..+
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqI 253 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQI 253 (722)
T ss_pred cchhhhhhhhheeeeeccCCCC-CChHHH
Confidence 8999999999999999999997 555544
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.05 E-value=1.8e-10 Score=100.10 Aligned_cols=167 Identities=33% Similarity=0.472 Sum_probs=113.2
Q ss_pred cCCCcccEEECcCCCCCCCcccc--CC-CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCC
Q 043038 5 TKFTQLLFRSLDSNNMSGLLPLI--SS-NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQ 81 (271)
Q Consensus 5 ~~~~~L~~L~l~~n~~~~~~~~~--~~-~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 81 (271)
..++.++.+++.+|.+....+.. .. +|+.|++++|.+.. +| ..+..++.|+.|++++|++. .+|......+
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~-l~----~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~ 186 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES-LP----SPLRNLPNLKNLDLSFNDLS-DLPKLLSNLS 186 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccchhh-hh----hhhhccccccccccCCchhh-hhhhhhhhhh
Confidence 34566788888888887655433 32 78888888888765 33 23334788888888888887 6666555778
Q ss_pred CCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec------------CCCCcccEEEecc
Q 043038 82 NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV------------ERFSRMVVLNLRS 149 (271)
Q Consensus 82 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l------------~~~~~L~~L~l~~ 149 (271)
.|+.|++++|++. .+|........|+.+.+++|... ..+..+..++.+..+.+ +.++++++|++++
T Consensus 187 ~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~ 264 (394)
T COG4886 187 NLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSN 264 (394)
T ss_pred hhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccchhccccccceecccc
Confidence 8888888888887 56655445556888888888544 34455555555444432 4455677888888
Q ss_pred CccCCCCchhhhcCccccEEeccCCccceecC
Q 043038 150 NKFHGPLPTRFCDLAILQILDIADNNLSGAIP 181 (271)
Q Consensus 150 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 181 (271)
|.++. ++. ++....++.+++++|.+....+
T Consensus 265 n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 265 NQISS-ISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccccc-ccc-ccccCccCEEeccCccccccch
Confidence 88874 333 6777788888888877764433
No 29
>PLN03150 hypothetical protein; Provisional
Probab=99.04 E-value=7.5e-10 Score=101.15 Aligned_cols=109 Identities=31% Similarity=0.467 Sum_probs=79.9
Q ss_pred cccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecC
Q 043038 58 RLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVE 137 (271)
Q Consensus 58 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~ 137 (271)
.++.|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|+.++.+++|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~----- 493 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR----- 493 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC-----
Confidence 367778888888777777788888888888888888777777777888888888888888777777776655444
Q ss_pred CCCcccEEEeccCccCCCCchhhhcC-ccccEEeccCCccc
Q 043038 138 RFSRMVVLNLRSNKFHGPLPTRFCDL-AILQILDIADNNLS 177 (271)
Q Consensus 138 ~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~ 177 (271)
.|++++|.+++.+|..+... ..+..+++.+|...
T Consensus 494 ------~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 494 ------ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred ------EEECcCCcccccCChHHhhccccCceEEecCCccc
Confidence 44577788877777776653 35567777777543
No 30
>PLN03150 hypothetical protein; Provisional
Probab=99.02 E-value=9.2e-10 Score=100.56 Aligned_cols=94 Identities=35% Similarity=0.588 Sum_probs=78.6
Q ss_pred CCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhh
Q 043038 82 NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFC 161 (271)
Q Consensus 82 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~ 161 (271)
.++.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+ .|++++|.+++.+|..++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~-----------~LdLs~N~lsg~iP~~l~ 487 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLE-----------VLDLSYNSFNGSIPESLG 487 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC-----------EEECCCCCCCCCCchHHh
Confidence 377889999998888888888899999999999998888887777666544 555888999888898899
Q ss_pred cCccccEEeccCCccceecCccccc
Q 043038 162 DLAILQILDIADNNLSGAIPNYINN 186 (271)
Q Consensus 162 ~l~~L~~L~l~~n~l~~~~~~~~~~ 186 (271)
.+++|+.|++++|.++|.+|..+..
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred cCCCCCEEECcCCcccccCChHHhh
Confidence 9999999999999998888877654
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=5.2e-10 Score=85.01 Aligned_cols=106 Identities=27% Similarity=0.363 Sum_probs=30.5
Q ss_pred CCcccEEEccCcccCCCCCcccc-CCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCcccc-CCCCccE
Q 043038 56 TKRLEALKLNDNYLQGELPDCWM-SDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLK-NCTALES 133 (271)
Q Consensus 56 ~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~-~l~~L~~ 133 (271)
...+++|++++|.|+ .+. .+. .+.+|+.|++++|.++ .++ .+..++.|+.|++++|.++ .+.+.+. .++
T Consensus 18 ~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp---- 88 (175)
T PF14580_consen 18 PVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLP---- 88 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-T----
T ss_pred ccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCC----
Confidence 445677777777776 332 233 4567777777777776 333 3556677777777777776 3333332 233
Q ss_pred EecCCCCcccEEEeccCccCCCC-chhhhcCccccEEeccCCccc
Q 043038 134 LDVERFSRMVVLNLRSNKFHGPL-PTRFCDLAILQILDIADNNLS 177 (271)
Q Consensus 134 L~l~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~ 177 (271)
+|+.|++++|++...- -..+..++.|+.|++.+|.++
T Consensus 89 -------~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 89 -------NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -------T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred -------cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 3445557777765321 134556677777777777665
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.98 E-value=1.1e-10 Score=93.83 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=21.4
Q ss_pred HHhhHhhhhhcCCcccc-cccHhhhccCCCCEEEccCCCC
Q 043038 232 ILNLVMVTIVSRNDLLK-NVPLEVRNLKATQSLNFSHNTF 270 (271)
Q Consensus 232 ~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i 270 (271)
.+.+|+.||+++|++.. +-...++.+|.|+++.+.+|.+
T Consensus 372 KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 372 KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 34556666666666532 1233455666666666666544
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.91 E-value=1.4e-09 Score=68.15 Aligned_cols=59 Identities=39% Similarity=0.568 Sum_probs=34.2
Q ss_pred cccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCc
Q 043038 58 RLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNR 116 (271)
Q Consensus 58 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~ 116 (271)
+|++|++++|+++...+..|.++++|++|++++|.++...+..|..+++|+.+++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45566666666653333455566666666666666654445555666666666666654
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.8e-10 Score=96.60 Aligned_cols=197 Identities=22% Similarity=0.186 Sum_probs=100.3
Q ss_pred CCcccEEEccCcccCCCCC--ccccCCCCCCEEEccCCccccc--CCcccccCCCccEEEccCCccccccCccc-cCCCC
Q 043038 56 TKRLEALKLNDNYLQGELP--DCWMSDQNLKILKLSNNKFIGN--LPNSFGSLAFLVWLDLGKNRLFGTIPATL-KNCTA 130 (271)
Q Consensus 56 ~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~l~l~~n~l~~~~~~~~-~~l~~ 130 (271)
+.+|++..+.++.+. ..+ .....++.++.||++.|-+..- +..-...+|+|+.|+++.|++........ ..+++
T Consensus 120 ~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 444555555555544 222 1334455555555555544311 11122245555555555555442111111 11233
Q ss_pred ccEEec--------------CCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceecC--cccccccCCcc-c
Q 043038 131 LESLDV--------------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIP--NYINNVTGMVT-T 193 (271)
Q Consensus 131 L~~L~l--------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~-~ 193 (271)
++.|.+ ..+|+|+.|++++|..-..-.....-+..|+.|++++|.+. ..+ ...+.++.|.. .
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhh
Confidence 333333 44677888888888421122223334567888899888876 333 34456666666 3
Q ss_pred cccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCccccc-ccHhhhccCCCCEEEccCCCCC
Q 043038 194 NSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKN-VPLEVRNLKATQSLNFSHNTFT 271 (271)
Q Consensus 194 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~i~ 271 (271)
....+++...+|.. ...+-...+++|++|++..|.+.+. -...+..+++|+.+.+.+|.|+
T Consensus 278 ls~tgi~si~~~d~-----------------~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 278 LSSTGIASIAEPDV-----------------ESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccCcchhcCCCc-----------------cchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 33444433333311 0011113577888899998888431 2234566777777777776653
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.89 E-value=1.9e-10 Score=92.37 Aligned_cols=127 Identities=24% Similarity=0.305 Sum_probs=83.1
Q ss_pred CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccE
Q 043038 30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVW 109 (271)
Q Consensus 30 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 109 (271)
.|+.+++++|.++. +.+.+ .-.|.++.|++|+|.+. .+.. +..+++|+.||+++|.++ .+.+|-.++.+.++
T Consensus 285 ~LtelDLS~N~I~~-iDESv----KL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 285 ELTELDLSGNLITQ-IDESV----KLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT 356 (490)
T ss_pred hhhhccccccchhh-hhhhh----hhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence 56777777777654 33222 22567777777777776 3323 566777777777777776 55566666777777
Q ss_pred EEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCC-CchhhhcCccccEEeccCCccc
Q 043038 110 LDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGP-LPTRFCDLAILQILDIADNNLS 177 (271)
Q Consensus 110 l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~ 177 (271)
|.++.|.+. .+ .++.+ +.+|..||+.+|+|... --..+++++.|+++.+.+|.+.
T Consensus 357 L~La~N~iE-~L-SGL~K-----------LYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 357 LKLAQNKIE-TL-SGLRK-----------LYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred eehhhhhHh-hh-hhhHh-----------hhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 777777665 21 23333 33566777888988631 1235778889999999999887
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.89 E-value=4.5e-10 Score=91.71 Aligned_cols=174 Identities=24% Similarity=0.264 Sum_probs=117.2
Q ss_pred ccCCCcccEEECcCCCCC---CCcccc----------CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccC
Q 043038 4 LTKFTQLLFRSLDSNNMS---GLLPLI----------SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQ 70 (271)
Q Consensus 4 ~~~~~~L~~L~l~~n~~~---~~~~~~----------~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 70 (271)
+.+.+.|+..+++.-... ..+|.. .+.|+++++++|.+....++.+...+.++..|+.|.+.+|.+.
T Consensus 54 L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 54 LASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred HhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 445566777777654332 223333 1378888888888877777777777777888888888888776
Q ss_pred CCCCcc-------------ccCCCCCCEEEccCCcccccC----CcccccCCCccEEEccCCccccc----cCccccCCC
Q 043038 71 GELPDC-------------WMSDQNLKILKLSNNKFIGNL----PNSFGSLAFLVWLDLGKNRLFGT----IPATLKNCT 129 (271)
Q Consensus 71 ~~~~~~-------------~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~l~l~~n~l~~~----~~~~~~~l~ 129 (271)
..-... ....+.|+++...+|++.... ...|...+.|+.+.++.|.+... +...+..++
T Consensus 134 ~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~ 213 (382)
T KOG1909|consen 134 PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCP 213 (382)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCC
Confidence 211111 233467888888888876321 22355567788888888876521 223456678
Q ss_pred CccEEec-----------------CCCCcccEEEeccCccCCCCchhhh-----cCccccEEeccCCccc
Q 043038 130 ALESLDV-----------------ERFSRMVVLNLRSNKFHGPLPTRFC-----DLAILQILDIADNNLS 177 (271)
Q Consensus 130 ~L~~L~l-----------------~~~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~ 177 (271)
+|+.||+ ..+++|+.+++++|.+...-...|. ..+.|+.+.+.+|.++
T Consensus 214 ~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 214 HLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred cceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 8888887 6678899999999999754443332 3578999999999987
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=7.1e-10 Score=93.04 Aligned_cols=168 Identities=24% Similarity=0.210 Sum_probs=77.9
Q ss_pred CCCcccEEECcCCCCCCCccc-----cCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCC-CCCccccC
Q 043038 6 KFTQLLFRSLDSNNMSGLLPL-----ISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQG-ELPDCWMS 79 (271)
Q Consensus 6 ~~~~L~~L~l~~n~~~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~ 79 (271)
.+++++.||+++|-+...-+. -+++|+.|+++.|.+.--....... .++.++.|.++.|.++- .+......
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~---~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL---LLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh---hhhhhheEEeccCCCCHHHHHHHHHh
Confidence 456666666666655432221 1456666666666553211111111 14455555555555541 11222334
Q ss_pred CCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccC--ccccCCCCccEEec-------------------CC
Q 043038 80 DQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIP--ATLKNCTALESLDV-------------------ER 138 (271)
Q Consensus 80 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~--~~~~~l~~L~~L~l-------------------~~ 138 (271)
+++|+.|++..|...........-++.|+.|++++|.+. ..+ ...+.++.|..|++ ..
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~ 299 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT 299 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcc
Confidence 555566666555311111112223445666666666554 222 22233333333322 33
Q ss_pred CCcccEEEeccCccCCCC-chhhhcCccccEEeccCCccc
Q 043038 139 FSRMVVLNLRSNKFHGPL-PTRFCDLAILQILDIADNNLS 177 (271)
Q Consensus 139 ~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~ 177 (271)
+++|++|++..|++.+.. -..+..+++|+.+.+..|.++
T Consensus 300 f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 300 FPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 456777777777765321 122344556666666666554
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.78 E-value=6.8e-09 Score=65.02 Aligned_cols=61 Identities=38% Similarity=0.516 Sum_probs=48.1
Q ss_pred CCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcc
Q 043038 29 SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKF 93 (271)
Q Consensus 29 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 93 (271)
++|++|++++|.++. +|. ..|..+++|++|++++|.++...+.+|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~-i~~---~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTE-IPP---DSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESE-ECT---TTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCc-cCH---HHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 467888888888875 332 2333588999999999999866777899999999999999875
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.67 E-value=3.7e-08 Score=92.55 Aligned_cols=129 Identities=26% Similarity=0.321 Sum_probs=93.7
Q ss_pred CccCCCcccEEECcCCCCCCCcc-ccCCCccEEEccCCc--cccccchhhhhhccCCCcccEEEccCcccCCCCCccccC
Q 043038 3 NLTKFTQLLFRSLDSNNMSGLLP-LISSNLVYLGLSDNS--FLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMS 79 (271)
Q Consensus 3 ~~~~~~~L~~L~l~~n~~~~~~~-~~~~~L~~L~l~~n~--~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 79 (271)
........+++.+-+|.+....- ...+.|++|-+.+|. +.. ++..+ |..++.|++||+++|.-.+.+|..++.
T Consensus 518 ~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~-is~~f---f~~m~~LrVLDLs~~~~l~~LP~~I~~ 593 (889)
T KOG4658|consen 518 QVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLE-ISGEF---FRSLPLLRVLDLSGNSSLSKLPSSIGE 593 (889)
T ss_pred cccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhh-cCHHH---HhhCcceEEEECCCCCccCcCChHHhh
Confidence 34445566777777666653221 123478888888886 332 33322 335899999999988655589999999
Q ss_pred CCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec
Q 043038 80 DQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV 136 (271)
Q Consensus 80 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l 136 (271)
+-+|++|++++..+. .+|..+.++..|.+|++..+.....+|.....+.+|+.|.+
T Consensus 594 Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 594 LVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRL 649 (889)
T ss_pred hhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEe
Confidence 999999999999998 88889999999999999888765455555555888888876
No 40
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.62 E-value=4.8e-08 Score=77.69 Aligned_cols=172 Identities=24% Similarity=0.248 Sum_probs=113.2
Q ss_pred CCCcccEEECcCCCCCCCccccC-------CCccEEEccCCcccc---ccch---hhhhhccCCCcccEEEccCcccCCC
Q 043038 6 KFTQLLFRSLDSNNMSGLLPLIS-------SNLVYLGLSDNSFLG---SISH---FLCDKINETKRLEALKLNDNYLQGE 72 (271)
Q Consensus 6 ~~~~L~~L~l~~n~~~~~~~~~~-------~~L~~L~l~~n~~~~---~~~~---~~~~~~~~~~~L~~L~l~~n~l~~~ 72 (271)
.+..+..+|+|+|.|......++ .+|+..+++.-.... .+++ .+..++.+|+.|+..++|.|.+...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 46778889999999875543332 367777777654332 2232 2334556789999999999988755
Q ss_pred CCcc----ccCCCCCCEEEccCCcccccCCc-------------ccccCCCccEEEccCCccccccCcc-----ccCCCC
Q 043038 73 LPDC----WMSDQNLKILKLSNNKFIGNLPN-------------SFGSLAFLVWLDLGKNRLFGTIPAT-----LKNCTA 130 (271)
Q Consensus 73 ~~~~----~~~l~~L~~L~l~~n~~~~~~~~-------------~~~~l~~L~~l~l~~n~l~~~~~~~-----~~~l~~ 130 (271)
.|.. ++....|.+|.+++|.+...--+ ....-|.|+.....+|++.. .|.. +..-..
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~~ 186 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESHEN 186 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhhcC
Confidence 5543 45567899999999987521111 12345788888888888762 2221 111123
Q ss_pred ccEEec------------------CCCCcccEEEeccCccCCC----CchhhhcCccccEEeccCCccce
Q 043038 131 LESLDV------------------ERFSRMVVLNLRSNKFHGP----LPTRFCDLAILQILDIADNNLSG 178 (271)
Q Consensus 131 L~~L~l------------------~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~ 178 (271)
++.+.+ .++.+|+.||+++|.++.. +...++.|+.|+.|.+.+|-++.
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 444433 5567899999999998742 34567788899999999998763
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.52 E-value=2.6e-08 Score=87.08 Aligned_cols=106 Identities=28% Similarity=0.280 Sum_probs=62.6
Q ss_pred ccCCCcccEEECcCCCCCCCcc--ccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCC
Q 043038 4 LTKFTQLLFRSLDSNNMSGLLP--LISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQ 81 (271)
Q Consensus 4 ~~~~~~L~~L~l~~n~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 81 (271)
+..++.++.+++.+|.+..... ..+++|++|++++|.++...+ + ..++.|+.|++++|.|+ .+ ..+..+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l----~~l~~L~~L~l~~N~i~-~~-~~~~~l~ 162 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--L----STLTLLKELNLSGNLIS-DI-SGLESLK 162 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--h----hhccchhhheeccCcch-hc-cCCccch
Confidence 4566667777777777665544 335677777777777665222 1 12555777777777765 22 2334466
Q ss_pred CCCEEEccCCcccccCCcc-cccCCCccEEEccCCccc
Q 043038 82 NLKILKLSNNKFIGNLPNS-FGSLAFLVWLDLGKNRLF 118 (271)
Q Consensus 82 ~L~~L~l~~n~~~~~~~~~-~~~l~~L~~l~l~~n~l~ 118 (271)
.|+.+++++|.+...-+ . ...+.+++.+.+.+|.+.
T Consensus 163 ~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 163 SLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIR 199 (414)
T ss_pred hhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchh
Confidence 67777777777662222 1 245566666666666654
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.48 E-value=4.6e-08 Score=85.48 Aligned_cols=189 Identities=26% Similarity=0.351 Sum_probs=98.0
Q ss_pred CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccE
Q 043038 30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVW 109 (271)
Q Consensus 30 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 109 (271)
.++.+.++.|.++. ....+..+.+++.+++.+|.|. .+...+..+.+|++|++++|.|+... .+..++.|+.
T Consensus 73 ~l~~l~l~~n~i~~-----~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~ 144 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK-----ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKE 144 (414)
T ss_pred hHHhhccchhhhhh-----hhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhh
Confidence 44445555555543 1122233666677777777666 34333455666777777777766222 2444555666
Q ss_pred EEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchh-hhcCccccEEeccCCccceecCccccccc
Q 043038 110 LDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTR-FCDLAILQILDIADNNLSGAIPNYINNVT 188 (271)
Q Consensus 110 l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 188 (271)
|++.+|.+. .+. .+.. ++.|+.+++++|.++. +... ...+..++.+.+.+|.+. .+ ..+..+.
T Consensus 145 L~l~~N~i~-~~~-~~~~-----------l~~L~~l~l~~n~i~~-ie~~~~~~~~~l~~l~l~~n~i~-~i-~~~~~~~ 208 (414)
T KOG0531|consen 145 LNLSGNLIS-DIS-GLES-----------LKSLKLLDLSYNRIVD-IENDELSELISLEELDLGGNSIR-EI-EGLDLLK 208 (414)
T ss_pred heeccCcch-hcc-CCcc-----------chhhhcccCCcchhhh-hhhhhhhhccchHHHhccCCchh-cc-cchHHHH
Confidence 777777665 221 1222 2234455566666652 2221 355666666777766664 11 1111111
Q ss_pred CCcc----ccccccccccccccccchhhhhhhhceeccccchhhHHHHHh--hHhhhhhcCCcccccccHhhhccCCCCE
Q 043038 189 GMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILN--LVMVTIVSRNDLLKNVPLEVRNLKATQS 262 (271)
Q Consensus 189 ~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 262 (271)
.+.. .|.+..+.. . .... .|+.+++.+|++.. ++..+..+..+..
T Consensus 209 ~l~~~~l~~n~i~~~~~------------------------l----~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~ 259 (414)
T KOG0531|consen 209 KLVLLSLLDNKISKLEG------------------------L----NELVMLHLRELYLSGNRISR-SPEGLENLKNLPV 259 (414)
T ss_pred HHHHhhcccccceeccC------------------------c----ccchhHHHHHHhcccCcccc-ccccccccccccc
Confidence 1111 122211100 0 0112 37888888888754 4467778888888
Q ss_pred EEccCCCCC
Q 043038 263 LNFSHNTFT 271 (271)
Q Consensus 263 L~l~~n~i~ 271 (271)
+++..|+++
T Consensus 260 l~~~~n~~~ 268 (414)
T KOG0531|consen 260 LDLSSNRIS 268 (414)
T ss_pred cchhhcccc
Confidence 888877653
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.41 E-value=4e-08 Score=87.71 Aligned_cols=103 Identities=30% Similarity=0.367 Sum_probs=72.3
Q ss_pred CcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCc-cccCCCCccEEe
Q 043038 57 KRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPA-TLKNCTALESLD 135 (271)
Q Consensus 57 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~-~~~~l~~L~~L~ 135 (271)
-.|.+.++++|.+. .+..++.-++.+++|++++|+++.. . .+.+++.|++||++.|.+. .+|. ....+
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc------- 232 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC------- 232 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh-H-HHHhcccccccccccchhc-cccccchhhh-------
Confidence 34667778888887 6667777778888888888888733 2 5677888888888888877 4443 11122
Q ss_pred cCCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccc
Q 043038 136 VERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177 (271)
Q Consensus 136 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 177 (271)
+|+.|.+.+|.++.. ..+.++++|+.||+++|-+.
T Consensus 233 -----~L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 233 -----KLQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLS 267 (1096)
T ss_pred -----hheeeeecccHHHhh--hhHHhhhhhhccchhHhhhh
Confidence 255666888887632 24567888888888888776
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.31 E-value=2.7e-08 Score=88.73 Aligned_cols=152 Identities=24% Similarity=0.209 Sum_probs=98.8
Q ss_pred ccCCCcccEEECcCCCCCCC---cc------c-----------------------c--CCCccEEEccCCccccccchhh
Q 043038 4 LTKFTQLLFRSLDSNNMSGL---LP------L-----------------------I--SSNLVYLGLSDNSFLGSISHFL 49 (271)
Q Consensus 4 ~~~~~~L~~L~l~~n~~~~~---~~------~-----------------------~--~~~L~~L~l~~n~~~~~~~~~~ 49 (271)
|-.|+.|++|.+.+|.+... .+ . + +-.|.+.++++|.+.. +
T Consensus 105 ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~-----m 179 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVL-----M 179 (1096)
T ss_pred eccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHh-----H
Confidence 45788999999999988632 11 0 0 1156777788888753 2
Q ss_pred hhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCC
Q 043038 50 CDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCT 129 (271)
Q Consensus 50 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~ 129 (271)
-..++-++.++.|+|++|+++ ... .+..++.|++||+++|.+. .+|.--..-..|+.|++.+|.++ .+ .++.+++
T Consensus 180 D~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~-tL-~gie~Lk 254 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALT-TL-RGIENLK 254 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHH-hh-hhHHhhh
Confidence 222333778999999999998 443 7889999999999999998 55532111234889999999987 32 4566666
Q ss_pred CccEEecCCCCcccEEEeccCccCCCC-chhhhcCccccEEeccCCcc
Q 043038 130 ALESLDVERFSRMVVLNLRSNKFHGPL-PTRFCDLAILQILDIADNNL 176 (271)
Q Consensus 130 ~L~~L~l~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l 176 (271)
+|+.|| +++|-+.+.- -..+..+..|+.|.+.+|.+
T Consensus 255 sL~~LD-----------lsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 255 SLYGLD-----------LSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhccc-----------hhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 666555 5555554211 01123344555556665554
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2.1e-08 Score=80.66 Aligned_cols=86 Identities=27% Similarity=0.241 Sum_probs=45.1
Q ss_pred CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCc-cccc-CCcccccCCCc
Q 043038 30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNK-FIGN-LPNSFGSLAFL 107 (271)
Q Consensus 30 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~-~~~~~~~l~~L 107 (271)
.++++|++...++. +.+...+..+.+|+.|.+.++.+...+...++.-..|..|+++.+. ++.. ..--+..++.|
T Consensus 186 Rlq~lDLS~s~it~---stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITV---STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhHHhhcchhheeH---HHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 46666666655542 2222223335666666666666665555555556666666666543 3310 01123345566
Q ss_pred cEEEccCCccc
Q 043038 108 VWLDLGKNRLF 118 (271)
Q Consensus 108 ~~l~l~~n~l~ 118 (271)
++|++++|.+.
T Consensus 263 ~~LNlsWc~l~ 273 (419)
T KOG2120|consen 263 DELNLSWCFLF 273 (419)
T ss_pred hhcCchHhhcc
Confidence 66666666544
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.21 E-value=6.4e-07 Score=51.71 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=31.7
Q ss_pred hhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038 234 NLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271 (271)
Q Consensus 234 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 271 (271)
++|++|++++|++. ++|..+.+|++|+.|++++|+|+
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 46899999999997 48888999999999999999985
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.21 E-value=3e-07 Score=73.25 Aligned_cols=148 Identities=22% Similarity=0.268 Sum_probs=96.9
Q ss_pred CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCC---C-------CCccccCCCCCCEEEccCCcccccC
Q 043038 28 SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQG---E-------LPDCWMSDQNLKILKLSNNKFIGNL 97 (271)
Q Consensus 28 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~---~-------~~~~~~~l~~L~~L~l~~n~~~~~~ 97 (271)
+..++.+++++|.+..+..+.+++.+.+-.+|+..+++.-.... . ...++.+|+.|+.+++|.|-+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 46889999999999988888899988888889999888654321 1 2334567899999999999987555
Q ss_pred Ccc----cccCCCccEEEccCCccccccCccccCCCCccEEec----CCCCcccEEEeccCccCCCCch----hhhcCcc
Q 043038 98 PNS----FGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV----ERFSRMVVLNLRSNKFHGPLPT----RFCDLAI 165 (271)
Q Consensus 98 ~~~----~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l----~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~ 165 (271)
|.. +..-+.+.+|.+.+|.+....-..++. .|..|-. ..-|.|+.+....|.+...... .+.....
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN 186 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence 543 445678999999999875211112220 1111111 2345566777777776522211 1233356
Q ss_pred ccEEeccCCccc
Q 043038 166 LQILDIADNNLS 177 (271)
Q Consensus 166 L~~L~l~~n~l~ 177 (271)
|+++.+.+|.|.
T Consensus 187 lk~vki~qNgIr 198 (388)
T COG5238 187 LKEVKIQQNGIR 198 (388)
T ss_pred ceeEEeeecCcC
Confidence 777777777664
No 48
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.12 E-value=5.6e-06 Score=78.18 Aligned_cols=130 Identities=25% Similarity=0.330 Sum_probs=95.4
Q ss_pred CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcc--cCCCCCccccCCCCCCEEEccCCcccccCCcccccCC
Q 043038 28 SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNY--LQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLA 105 (271)
Q Consensus 28 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 105 (271)
....+...+.+|.+.. ++.... .+.|++|-+..|. +.......|..++.|..||+++|.-.+.+|..++.+-
T Consensus 522 ~~~~rr~s~~~~~~~~-~~~~~~-----~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li 595 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEH-IAGSSE-----NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV 595 (889)
T ss_pred hhheeEEEEeccchhh-ccCCCC-----CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence 3467777888877654 332222 5678999988886 4423344477899999999999876668999999999
Q ss_pred CccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCc
Q 043038 106 FLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNN 175 (271)
Q Consensus 106 ~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 175 (271)
+|+.|+++++.+. .+|.+++.++.|.+|+ +..+.-...+|.....+.+|++|.+....
T Consensus 596 ~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln-----------l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 596 HLRYLDLSDTGIS-HLPSGLGNLKKLIYLN-----------LEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhhcccccCCCcc-ccchHHHHHHhhheec-----------cccccccccccchhhhcccccEEEeeccc
Confidence 9999999999998 8999999888777666 44433323346666668888888887654
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=5.3e-08 Score=78.40 Aligned_cols=85 Identities=26% Similarity=0.180 Sum_probs=45.5
Q ss_pred CCCEEEccCCccccc-CCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccC-ccCCC-Cch
Q 043038 82 NLKILKLSNNKFIGN-LPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSN-KFHGP-LPT 158 (271)
Q Consensus 82 ~L~~L~l~~n~~~~~-~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n-~l~~~-~~~ 158 (271)
.+|++|+++..|+.. ....+..+.+|+.+.+.++++.+.+...+..-..|+ .|+++.+ .++.. ..-
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~-----------~lnlsm~sG~t~n~~~l 254 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLV-----------RLNLSMCSGFTENALQL 254 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccce-----------eeccccccccchhHHHH
Confidence 366666666665521 112233455666666666666655444454444444 4445543 34321 223
Q ss_pred hhhcCccccEEeccCCccc
Q 043038 159 RFCDLAILQILDIADNNLS 177 (271)
Q Consensus 159 ~~~~l~~L~~L~l~~n~l~ 177 (271)
.+..++.|+.|+++||.+.
T Consensus 255 l~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 255 LLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred HHHhhhhHhhcCchHhhcc
Confidence 4556677777777777654
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.00 E-value=7.3e-07 Score=63.90 Aligned_cols=36 Identities=28% Similarity=0.392 Sum_probs=14.7
Q ss_pred CCCEEEccCCcccccCCcccccCCCccEEEccCCccc
Q 043038 82 NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLF 118 (271)
Q Consensus 82 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~ 118 (271)
.++.+++++|++. .+|..+..++.|+.++++.|.+.
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc
Confidence 3344444444443 33333444444444444444433
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.98 E-value=8e-06 Score=47.09 Aligned_cols=35 Identities=40% Similarity=0.524 Sum_probs=14.4
Q ss_pred ccEEEccCcccCCCCCccccCCCCCCEEEccCCccc
Q 043038 59 LEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFI 94 (271)
Q Consensus 59 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 94 (271)
|++|++++|+|+ .+|..+..+++|+.|++++|+++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 444444444444 33333444444444444444443
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.95 E-value=7.8e-07 Score=63.76 Aligned_cols=110 Identities=23% Similarity=0.241 Sum_probs=85.4
Q ss_pred CcccEEECcCCCCCCCc--cccC---CCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCC
Q 043038 8 TQLLFRSLDSNNMSGLL--PLIS---SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQN 82 (271)
Q Consensus 8 ~~L~~L~l~~n~~~~~~--~~~~---~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 82 (271)
..+..+|+++|.+.... +..+ .+|+..++++|.+.. .|..+.. +++..+.+++++|.++ .+|..+..++.
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~---kf~t~t~lNl~~neis-dvPeE~Aam~a 101 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTI---KFPTATTLNLANNEIS-DVPEELAAMPA 101 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhh-CCHHHhh---ccchhhhhhcchhhhh-hchHHHhhhHH
Confidence 45677899999876321 1112 377888999999976 5544432 3568999999999999 88999999999
Q ss_pred CCEEEccCCcccccCCcccccCCCccEEEccCCccccccCcc
Q 043038 83 LKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPAT 124 (271)
Q Consensus 83 L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~ 124 (271)
|+.++++.|.+. ..|..+..+.++..|+..+|.+. .+|..
T Consensus 102 Lr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d 141 (177)
T KOG4579|consen 102 LRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD 141 (177)
T ss_pred hhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence 999999999998 67777778899999999998876 55544
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.90 E-value=4.5e-05 Score=65.43 Aligned_cols=74 Identities=14% Similarity=0.245 Sum_probs=48.0
Q ss_pred cCCCcccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCc-ccCCCCCccccCCCCC
Q 043038 5 TKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDN-YLQGELPDCWMSDQNL 83 (271)
Q Consensus 5 ~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L 83 (271)
..+..++.|++++|.+.. +|...++|+.|.+++|.--..+|..++ +.|+.|.+++| .+. .+|. +|
T Consensus 49 ~~~~~l~~L~Is~c~L~s-LP~LP~sLtsL~Lsnc~nLtsLP~~LP------~nLe~L~Ls~Cs~L~-sLP~------sL 114 (426)
T PRK15386 49 EEARASGRLYIKDCDIES-LPVLPNELTEITIENCNNLTTLPGSIP------EGLEKLTVCHCPEIS-GLPE------SV 114 (426)
T ss_pred HHhcCCCEEEeCCCCCcc-cCCCCCCCcEEEccCCCCcccCCchhh------hhhhheEccCccccc-cccc------cc
Confidence 346778888998887664 455445788888887554334555443 46888888887 454 3443 45
Q ss_pred CEEEccCCc
Q 043038 84 KILKLSNNK 92 (271)
Q Consensus 84 ~~L~l~~n~ 92 (271)
+.|++..+.
T Consensus 115 e~L~L~~n~ 123 (426)
T PRK15386 115 RSLEIKGSA 123 (426)
T ss_pred ceEEeCCCC
Confidence 666666554
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.86 E-value=5e-05 Score=58.18 Aligned_cols=83 Identities=29% Similarity=0.247 Sum_probs=37.2
Q ss_pred CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccC-CcccccCCCcc
Q 043038 30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNL-PNSFGSLAFLV 108 (271)
Q Consensus 30 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~ 108 (271)
....+++++|.+.. ...|..++.|.+|.+++|.|+...|.--..+++|+.|.+++|.+.... -..+..+|+|+
T Consensus 43 ~~d~iDLtdNdl~~------l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK------LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE 116 (233)
T ss_pred ccceecccccchhh------cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence 44555555555432 111222455555555555555333332223345555555555543110 01133345555
Q ss_pred EEEccCCccc
Q 043038 109 WLDLGKNRLF 118 (271)
Q Consensus 109 ~l~l~~n~l~ 118 (271)
.|.+-+|...
T Consensus 117 ~Ltll~Npv~ 126 (233)
T KOG1644|consen 117 YLTLLGNPVE 126 (233)
T ss_pred eeeecCCchh
Confidence 5555555543
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.64 E-value=3.4e-05 Score=71.16 Aligned_cols=149 Identities=14% Similarity=0.147 Sum_probs=76.0
Q ss_pred cccEEECcCCCCCCCccc-----cCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCC
Q 043038 9 QLLFRSLDSNNMSGLLPL-----ISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNL 83 (271)
Q Consensus 9 ~L~~L~l~~n~~~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 83 (271)
+|+.||+++.......+. -+|.|++|.+.+-.+.. +.+.....++++|.+||+|+..++ .+ .+++.+++|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~---~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknL 197 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN---DDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNL 197 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc---hhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccH
Confidence 456666666543322221 15677777777655532 223333345677777777777766 33 455666667
Q ss_pred CEEEccCCcccc-cCCcccccCCCccEEEccCCccccccCcccc---CCCCccEEecCCCCcccEEEeccCccCCCCchh
Q 043038 84 KILKLSNNKFIG-NLPNSFGSLAFLVWLDLGKNRLFGTIPATLK---NCTALESLDVERFSRMVVLNLRSNKFHGPLPTR 159 (271)
Q Consensus 84 ~~L~l~~n~~~~-~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~---~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~ 159 (271)
+.|.+.+=.+.. ..-..+..+++|+.||++....... +..+. .++ ..+|+|+.||.++..+++..-+.
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~-~~ii~qYlec~-------~~LpeLrfLDcSgTdi~~~~le~ 269 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDD-TKIIEQYLECG-------MVLPELRFLDCSGTDINEEILEE 269 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccc-hHHHHHHHHhc-------ccCccccEEecCCcchhHHHHHH
Confidence 666655544431 1112345667777777766554321 11000 011 33567777777777665432222
Q ss_pred -hhcCccccEEe
Q 043038 160 -FCDLAILQILD 170 (271)
Q Consensus 160 -~~~l~~L~~L~ 170 (271)
....++|+.+.
T Consensus 270 ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 270 LLNSHPNLQQIA 281 (699)
T ss_pred HHHhCccHhhhh
Confidence 22344444444
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.51 E-value=0.0002 Score=54.94 Aligned_cols=127 Identities=24% Similarity=0.195 Sum_probs=83.9
Q ss_pred ccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEE
Q 043038 31 LVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWL 110 (271)
Q Consensus 31 L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l 110 (271)
-+.+++++.++.. +.. +.. -..+...++|++|.+. .. ..|..++.|+.|.+.+|+|+...|.--..+++|+.|
T Consensus 21 e~e~~LR~lkip~-ien-lg~---~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L 93 (233)
T KOG1644|consen 21 ERELDLRGLKIPV-IEN-LGA---TLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTL 93 (233)
T ss_pred ccccccccccccc-hhh-ccc---cccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceE
Confidence 3456666666432 111 111 0346778999999987 44 446788999999999999996666555567889999
Q ss_pred EccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCC---chhhhcCccccEEeccCC
Q 043038 111 DLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPL---PTRFCDLAILQILDIADN 174 (271)
Q Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n 174 (271)
.+.+|.+. .+- .+-.| ..+|.|++|.+-+|.++..- --.+..+++|+.||+..=
T Consensus 94 ~LtnNsi~-~l~----dl~pL-----a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 94 ILTNNSIQ-ELG----DLDPL-----ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred EecCcchh-hhh----hcchh-----ccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 99999886 321 11111 23556777778888876321 124567888888888753
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=5.5e-05 Score=61.42 Aligned_cols=62 Identities=21% Similarity=0.151 Sum_probs=29.8
Q ss_pred CCcccEEEccCcccCCC--CCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCcc
Q 043038 56 TKRLEALKLNDNYLQGE--LPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRL 117 (271)
Q Consensus 56 ~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l 117 (271)
.+.++++++..|.|+.+ +...+..++.|+.|+++.|.+...+...-....+|+.+.+.+..+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL 133 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence 34556666666665521 222334556666666666655422111112334555555555443
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.26 E-value=3.1e-05 Score=71.46 Aligned_cols=107 Identities=20% Similarity=0.284 Sum_probs=63.0
Q ss_pred CcccEEEccCccc-CCCCCcccc-CCCCCCEEEccCCccc-ccCCcccccCCCccEEEccCCccccccCccccCCCCccE
Q 043038 57 KRLEALKLNDNYL-QGELPDCWM-SDQNLKILKLSNNKFI-GNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALES 133 (271)
Q Consensus 57 ~~L~~L~l~~n~l-~~~~~~~~~-~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~ 133 (271)
.+|+.|++++... ....|..++ -+|+|+.|.+++-.+. ..+...+..+|+|..||++++.++. + .++..+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHH
Confidence 4688888887642 212222233 4688888888875543 2223445577888888888888773 3 66777777766
Q ss_pred EecCCCCcccEEEeccCccCC-CCchhhhcCccccEEeccCCcc
Q 043038 134 LDVERFSRMVVLNLRSNKFHG-PLPTRFCDLAILQILDIADNNL 176 (271)
Q Consensus 134 L~l~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l 176 (271)
|.+ .+=.+.. ..-..+..+++|+.||+|..+.
T Consensus 200 L~m-----------rnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 200 LSM-----------RNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred Hhc-----------cCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 652 1111211 1123455677777777776544
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.14 E-value=0.00067 Score=58.40 Aligned_cols=13 Identities=15% Similarity=0.141 Sum_probs=7.7
Q ss_pred cccEEeccCCccc
Q 043038 165 ILQILDIADNNLS 177 (271)
Q Consensus 165 ~L~~L~l~~n~l~ 177 (271)
+|+.|++++|...
T Consensus 157 SLk~L~Is~c~~i 169 (426)
T PRK15386 157 SLKTLSLTGCSNI 169 (426)
T ss_pred cccEEEecCCCcc
Confidence 5666666665543
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.00012 Score=59.57 Aligned_cols=85 Identities=20% Similarity=0.246 Sum_probs=41.5
Q ss_pred CCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccc-cCCcccccCCCc
Q 043038 29 SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIG-NLPNSFGSLAFL 107 (271)
Q Consensus 29 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L 107 (271)
..++.+++.+|.+.+ ..+ +...+.++|.|+.|+++.|++...+...-....+|+.|-+.+..+.- ........+|.+
T Consensus 71 ~~v~elDL~~N~iSd-Wse-I~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 71 TDVKELDLTGNLISD-WSE-IGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhcccchhcc-HHH-HHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 466666666666643 211 11223346666667777666653221111234556666665554431 112223345555
Q ss_pred cEEEccCC
Q 043038 108 VWLDLGKN 115 (271)
Q Consensus 108 ~~l~l~~n 115 (271)
+.++++.|
T Consensus 149 telHmS~N 156 (418)
T KOG2982|consen 149 TELHMSDN 156 (418)
T ss_pred hhhhhccc
Confidence 55555555
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.00012 Score=59.03 Aligned_cols=98 Identities=28% Similarity=0.255 Sum_probs=64.9
Q ss_pred CCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCc--ccccCCC
Q 043038 29 SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPN--SFGSLAF 106 (271)
Q Consensus 29 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~l~~ 106 (271)
.+.+.|+.-||.+.+ |. ++. +|+.|++|.|+-|+|+ .+ ..|..|+.|++|++..|.|. .+.. -+.++++
T Consensus 19 ~~vkKLNcwg~~L~D-Is--ic~---kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~I~-sldEL~YLknlps 89 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDD-IS--ICE---KMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPS 89 (388)
T ss_pred HHhhhhcccCCCccH-HH--HHH---hcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCch
Confidence 355667777777654 22 332 4888888888888887 33 44577888888888888887 3322 3457888
Q ss_pred ccEEEccCCccccccCc-----cccCCCCccEEe
Q 043038 107 LVWLDLGKNRLFGTIPA-----TLKNCTALESLD 135 (271)
Q Consensus 107 L~~l~l~~n~l~~~~~~-----~~~~l~~L~~L~ 135 (271)
|+.|.+..|.-.+..+. .+..+++|+.||
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88888888876554333 234456666554
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.37 E-value=0.0025 Score=50.93 Aligned_cols=60 Identities=28% Similarity=0.258 Sum_probs=28.5
Q ss_pred CcccEEEccCcccCCCCCccccCCCCCCEEEccCC--cccccCCcccccCCCccEEEccCCccc
Q 043038 57 KRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNN--KFIGNLPNSFGSLAFLVWLDLGKNRLF 118 (271)
Q Consensus 57 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~~~~~~~~~~~~l~~L~~l~l~~n~l~ 118 (271)
..|+.+.+.+..++ .. ..|-.+++|+.|.++.| ++.+.++-.....|+|+++++++|++.
T Consensus 43 ~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 43 VELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 34444444444443 11 22334455666666665 333333322333466666666666655
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.32 E-value=0.014 Score=41.98 Aligned_cols=57 Identities=16% Similarity=0.213 Sum_probs=21.9
Q ss_pred CCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccC
Q 043038 56 TKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGK 114 (271)
Q Consensus 56 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~ 114 (271)
+..|+.+.+.. .++.....+|.++.+++.+.+..+ +.......|...++++.+.+..
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence 44555555543 233233444555555555555543 3322333444444555555543
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.17 E-value=0.0028 Score=50.61 Aligned_cols=85 Identities=26% Similarity=0.211 Sum_probs=60.0
Q ss_pred CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCc--ccCCCCCccccCCCCCCEEEccCCccccc-CCcccccC
Q 043038 28 SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDN--YLQGELPDCWMSDQNLKILKLSNNKFIGN-LPNSFGSL 104 (271)
Q Consensus 28 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l 104 (271)
+..++.+.+.+..++.. ..++. +++|+.|.++.| .+.+.++.....+++|+++.++.|++... .-.....+
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~----Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPK----LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred ccchhhhhhhccceeec--ccCCC----cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh
Confidence 55788888888777642 22443 889999999999 55555555455679999999999998721 11234566
Q ss_pred CCccEEEccCCccc
Q 043038 105 AFLVWLDLGKNRLF 118 (271)
Q Consensus 105 ~~L~~l~l~~n~l~ 118 (271)
.+|..|++..|..+
T Consensus 116 ~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVT 129 (260)
T ss_pred cchhhhhcccCCcc
Confidence 77888888887765
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.07 E-value=0.00021 Score=57.63 Aligned_cols=76 Identities=25% Similarity=0.208 Sum_probs=55.9
Q ss_pred CCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCc--cccCCCCccE
Q 043038 56 TKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPA--TLKNCTALES 133 (271)
Q Consensus 56 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~--~~~~l~~L~~ 133 (271)
+.+.+.|++.+|.+. .+. ....++.|+.|.++-|+|+ .+. .+..+++|++|++..|.+. .+.+ .+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~-DIs-ic~kMp~lEVLsLSvNkIs-sL~-pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DIS-ICEKMPLLEVLSLSVNKIS-SLA-PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCcc-HHH-HHHhcccceeEEeeccccc-cch-hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence 557888999999987 443 3368999999999999998 332 3667899999999999987 3332 3445555555
Q ss_pred Eec
Q 043038 134 LDV 136 (271)
Q Consensus 134 L~l 136 (271)
|.+
T Consensus 93 LWL 95 (388)
T KOG2123|consen 93 LWL 95 (388)
T ss_pred Hhh
Confidence 543
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.86 E-value=0.033 Score=39.93 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=30.0
Q ss_pred CCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCC
Q 043038 55 ETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKN 115 (271)
Q Consensus 55 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n 115 (271)
.++.++.+.+.++ +......+|..+..++.+.+.. .+.......|...++++.+.+..+
T Consensus 33 ~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 33 NCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN 91 (129)
T ss_dssp T-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT
T ss_pred ccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc
Confidence 3556777777664 4434445666666677777765 322133345555677777777554
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.25 E-value=0.009 Score=28.58 Aligned_cols=11 Identities=36% Similarity=0.534 Sum_probs=4.3
Q ss_pred CEEEccCCccc
Q 043038 84 KILKLSNNKFI 94 (271)
Q Consensus 84 ~~L~l~~n~~~ 94 (271)
++||+++|.++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33333333333
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.16 E-value=0.014 Score=27.94 Aligned_cols=18 Identities=44% Similarity=0.805 Sum_probs=8.6
Q ss_pred ccEEeccCCccceecCccc
Q 043038 166 LQILDIADNNLSGAIPNYI 184 (271)
Q Consensus 166 L~~L~l~~n~l~~~~~~~~ 184 (271)
|+.|++++|+++ .+|..+
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 445555555554 444433
No 69
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.02 E-value=0.00013 Score=64.53 Aligned_cols=40 Identities=25% Similarity=0.283 Sum_probs=22.6
Q ss_pred ccEEEccCCccccccchhhhhhccCCCcccEEEccCcccC
Q 043038 31 LVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQ 70 (271)
Q Consensus 31 L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 70 (271)
+..+.+.+|.+.......+...+...+.|..|+++.|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 5555566666555444455555555556666666666554
No 70
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.40 E-value=0.00062 Score=60.32 Aligned_cols=161 Identities=26% Similarity=0.261 Sum_probs=95.5
Q ss_pred ccEEECcCCCCCCCcccc-------CCCccEEEccCCccccccchhhhhhccCC-CcccEEEccCcccCCC----CCccc
Q 043038 10 LLFRSLDSNNMSGLLPLI-------SSNLVYLGLSDNSFLGSISHFLCDKINET-KRLEALKLNDNYLQGE----LPDCW 77 (271)
Q Consensus 10 L~~L~l~~n~~~~~~~~~-------~~~L~~L~l~~n~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~----~~~~~ 77 (271)
+..+++.+|.+....... ...++.|++++|.+.+.....++..+... ..+++|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 677888888887654332 35888899999999866666666655544 5677788888887743 33445
Q ss_pred cCCCCCCEEEccCCcccc----cCCcc----cccCCCccEEEccCCccccccCcccc-CCCCccEEecCCCCc-ccEEEe
Q 043038 78 MSDQNLKILKLSNNKFIG----NLPNS----FGSLAFLVWLDLGKNRLFGTIPATLK-NCTALESLDVERFSR-MVVLNL 147 (271)
Q Consensus 78 ~~l~~L~~L~l~~n~~~~----~~~~~----~~~l~~L~~l~l~~n~l~~~~~~~~~-~l~~L~~L~l~~~~~-L~~L~l 147 (271)
.....++.++++.|.+.. ..+.. +....+++++++.+|.++......+. .+ ...+. +..+++
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l--------~~~~~~~~el~l 240 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVL--------ASGESLLRELDL 240 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHH--------hccchhhHHHHH
Confidence 556778888888887631 11222 22456777788877776521111000 01 11112 334667
Q ss_pred ccCccCCC----CchhhhcC-ccccEEeccCCccce
Q 043038 148 RSNKFHGP----LPTRFCDL-AILQILDIADNNLSG 178 (271)
Q Consensus 148 ~~n~l~~~----~~~~~~~l-~~L~~L~l~~n~l~~ 178 (271)
..|.+.+. ..+.+... ..++.+++.+|.++.
T Consensus 241 ~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~ 276 (478)
T KOG4308|consen 241 ASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITE 276 (478)
T ss_pred HhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccc
Confidence 77776532 12223333 456777777777763
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.96 E-value=0.0075 Score=53.64 Aligned_cols=184 Identities=19% Similarity=0.090 Sum_probs=91.9
Q ss_pred CCcccEEECcCCCCCCC---cccc--CCCccEEEccCC-ccccccchhhhhhccCCCcccEEEccCcc-cCCCCCcccc-
Q 043038 7 FTQLLFRSLDSNNMSGL---LPLI--SSNLVYLGLSDN-SFLGSISHFLCDKINETKRLEALKLNDNY-LQGELPDCWM- 78 (271)
Q Consensus 7 ~~~L~~L~l~~n~~~~~---~~~~--~~~L~~L~l~~n-~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~- 78 (271)
++.++.+.+.++.-... .+.. .++|+.|+++++ ......+.........+++|+.++++.+. ++...-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45666666665533221 1111 457888888763 22222222222222336777888888776 5532222222
Q ss_pred CCCCCCEEEccCCc-ccccC-CcccccCCCccEEEccCCcccc-c-cCccccCCCCccEEec---CCCCcccEEEeccCc
Q 043038 79 SDQNLKILKLSNNK-FIGNL-PNSFGSLAFLVWLDLGKNRLFG-T-IPATLKNCTALESLDV---ERFSRMVVLNLRSNK 151 (271)
Q Consensus 79 ~l~~L~~L~l~~n~-~~~~~-~~~~~~l~~L~~l~l~~n~l~~-~-~~~~~~~l~~L~~L~l---~~~~~L~~L~l~~n~ 151 (271)
.++.|+.|.+.++. ++... .......+.|++++++++.... . +......+++++.+.+ ..++.++.+.+.+..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~ 346 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL 346 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence 26778888766665 44221 1223346678888887765421 1 2222233555444443 333446665555443
Q ss_pred cC---CCCchhhhcCccccEEeccCCccceec-CcccccccCC
Q 043038 152 FH---GPLPTRFCDLAILQILDIADNNLSGAI-PNYINNVTGM 190 (271)
Q Consensus 152 l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L 190 (271)
-. .........++.++.+.+.++...... ...+..++.+
T Consensus 347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 347 TLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred ccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 21 122234556777888888777643211 1334445544
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.90 E-value=0.042 Score=24.38 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=8.6
Q ss_pred CCCCEEEccCCCCC
Q 043038 258 KATQSLNFSHNTFT 271 (271)
Q Consensus 258 ~~L~~L~l~~n~i~ 271 (271)
++|+.|++++|+|+
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 46888888888764
No 73
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.45 E-value=0.027 Score=27.47 Aligned_cols=21 Identities=10% Similarity=-0.007 Sum_probs=12.1
Q ss_pred hhHhhhhhcCCcccccccHhh
Q 043038 234 NLVMVTIVSRNDLLKNVPLEV 254 (271)
Q Consensus 234 ~~L~~L~L~~n~l~~~~~~~l 254 (271)
++|+.|++++|.+.++.+..+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 456777777777766555544
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=90.29 E-value=0.088 Score=46.80 Aligned_cols=146 Identities=23% Similarity=0.119 Sum_probs=81.7
Q ss_pred cCCCcccEEECcCC-CCCCCcc-------ccCCCccEEEccCCc-cccccchhhhhhccCCCcccEEEccCcc-cCCC-C
Q 043038 5 TKFTQLLFRSLDSN-NMSGLLP-------LISSNLVYLGLSDNS-FLGSISHFLCDKINETKRLEALKLNDNY-LQGE-L 73 (271)
Q Consensus 5 ~~~~~L~~L~l~~n-~~~~~~~-------~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~-~ 73 (271)
...+.|+.|+++++ ......+ ....+++.++++++. +++..-..+. ..++.|+.|.+.++. ++.. +
T Consensus 211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~---~~c~~L~~L~l~~c~~lt~~gl 287 (482)
T KOG1947|consen 211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA---SRCPNLETLSLSNCSNLTDEGL 287 (482)
T ss_pred hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH---hhCCCcceEccCCCCccchhHH
Confidence 35678999999873 2221111 124689999999988 4432222222 237899999988776 5532 2
Q ss_pred CccccCCCCCCEEEccCCccc-c-cCCcccccCCCccEEEccCCc----cccccCccccCCC--CccEEecCCCCcccEE
Q 043038 74 PDCWMSDQNLKILKLSNNKFI-G-NLPNSFGSLAFLVWLDLGKNR----LFGTIPATLKNCT--ALESLDVERFSRMVVL 145 (271)
Q Consensus 74 ~~~~~~l~~L~~L~l~~n~~~-~-~~~~~~~~l~~L~~l~l~~n~----l~~~~~~~~~~l~--~L~~L~l~~~~~L~~L 145 (271)
......++.|++|+++++... . .........++++.+.+.... ++...-..+.... .+..+.+..+++++.+
T Consensus 288 ~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~ 367 (482)
T KOG1947|consen 288 VSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDL 367 (482)
T ss_pred HHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchh
Confidence 233456788999999988653 1 122223345555555443322 2211111111111 3445555777788888
Q ss_pred EeccCccC
Q 043038 146 NLRSNKFH 153 (271)
Q Consensus 146 ~l~~n~l~ 153 (271)
.+..+...
T Consensus 368 ~l~~~~~~ 375 (482)
T KOG1947|consen 368 SLSYCGIS 375 (482)
T ss_pred hhhhhhcc
Confidence 88777643
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.75 E-value=0.0058 Score=48.24 Aligned_cols=84 Identities=20% Similarity=0.177 Sum_probs=62.8
Q ss_pred CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCc
Q 043038 28 SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFL 107 (271)
Q Consensus 28 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 107 (271)
+...+.||++.|.+.. +...|..++.+..|+++.|.+. ..|..++....+..+++..|..+ ..|.++...+.+
T Consensus 41 ~kr~tvld~~s~r~vn-----~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVN-----LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred cceeeeehhhhhHHHh-----hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 4577778888887643 2333334677888888888887 67777777777888888888887 778888888888
Q ss_pred cEEEccCCccc
Q 043038 108 VWLDLGKNRLF 118 (271)
Q Consensus 108 ~~l~l~~n~l~ 118 (271)
+.++..+|.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 88888888765
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.17 E-value=0.12 Score=40.01 Aligned_cols=83 Identities=14% Similarity=0.129 Sum_probs=38.2
Q ss_pred CCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccC-ccCCCCchhh
Q 043038 82 NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSN-KFHGPLPTRF 160 (271)
Q Consensus 82 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n-~l~~~~~~~~ 160 (271)
.++.+|-++..|..+.-..+..++.++.+.+..|.--+. ..+..+. ...++|+.|++++| .||+.--..+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD--~~L~~l~-------~~~~~L~~L~lsgC~rIT~~GL~~L 172 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDD--WCLERLG-------GLAPSLQDLDLSGCPRITDGGLACL 172 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhh--HHHHHhc-------ccccchheeeccCCCeechhHHHHH
Confidence 455566666555433323344455555555555542211 1111111 11345556666655 4554333445
Q ss_pred hcCccccEEeccC
Q 043038 161 CDLAILQILDIAD 173 (271)
Q Consensus 161 ~~l~~L~~L~l~~ 173 (271)
..+++|+.|.+.+
T Consensus 173 ~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 173 LKLKNLRRLHLYD 185 (221)
T ss_pred HHhhhhHHHHhcC
Confidence 5556666665543
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.08 E-value=0.36 Score=23.82 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=7.1
Q ss_pred cccEEEeccCccC
Q 043038 141 RMVVLNLRSNKFH 153 (271)
Q Consensus 141 ~L~~L~l~~n~l~ 153 (271)
+|++|++++|.++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4455555555555
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.08 E-value=0.36 Score=23.82 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=7.1
Q ss_pred cccEEEeccCccC
Q 043038 141 RMVVLNLRSNKFH 153 (271)
Q Consensus 141 ~L~~L~l~~n~l~ 153 (271)
+|++|++++|.++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4455555555555
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.72 E-value=0.039 Score=42.64 Aligned_cols=34 Identities=12% Similarity=-0.053 Sum_probs=19.5
Q ss_pred HhhHhhhhhcCCc-ccccccHhhhccCCCCEEEcc
Q 043038 233 LNLVMVTIVSRND-LLKNVPLEVRNLKATQSLNFS 266 (271)
Q Consensus 233 ~~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~ 266 (271)
.++|+.|++++|. |++-.-.++..+++|+.|.+.
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 4566666666555 444455555666666555543
No 80
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=88.57 E-value=0.41 Score=23.87 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=11.8
Q ss_pred cCCCCEEEccCCCCC
Q 043038 257 LKATQSLNFSHNTFT 271 (271)
Q Consensus 257 l~~L~~L~l~~n~i~ 271 (271)
+.+|++|++++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 457888888888874
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=84.82 E-value=0.84 Score=23.10 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=11.0
Q ss_pred CCCCEEEccCCCCC
Q 043038 258 KATQSLNFSHNTFT 271 (271)
Q Consensus 258 ~~L~~L~l~~n~i~ 271 (271)
++|++|||++|.|+
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 57888888888774
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=78.86 E-value=0.047 Score=43.30 Aligned_cols=79 Identities=24% Similarity=0.153 Sum_probs=65.1
Q ss_pred CCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEE
Q 043038 55 ETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESL 134 (271)
Q Consensus 55 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L 134 (271)
.+.+.+.||++.|++. .....|..+..+..+|++.|.+. ..|..+.....+..++...|... ..|.+.+..++++.+
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 3678899999999886 55566777888899999999987 78888888888888888888887 778888888877766
Q ss_pred ec
Q 043038 135 DV 136 (271)
Q Consensus 135 ~l 136 (271)
+.
T Consensus 117 e~ 118 (326)
T KOG0473|consen 117 EQ 118 (326)
T ss_pred hh
Confidence 64
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=72.94 E-value=2.4 Score=21.13 Aligned_cols=14 Identities=36% Similarity=0.489 Sum_probs=9.6
Q ss_pred CCCCEEEccCCCCC
Q 043038 258 KATQSLNFSHNTFT 271 (271)
Q Consensus 258 ~~L~~L~l~~n~i~ 271 (271)
++|+.|++++|+++
T Consensus 2 ~~L~~L~vs~N~Lt 15 (26)
T smart00364 2 PSLKELNVSNNQLT 15 (26)
T ss_pred cccceeecCCCccc
Confidence 35777777777764
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=72.42 E-value=2.6 Score=20.67 Aligned_cols=13 Identities=23% Similarity=0.199 Sum_probs=11.0
Q ss_pred cCCCCEEEccCCC
Q 043038 257 LKATQSLNFSHNT 269 (271)
Q Consensus 257 l~~L~~L~l~~n~ 269 (271)
|++|++|++++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 5789999999984
No 85
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=62.22 E-value=5.2 Score=34.86 Aligned_cols=62 Identities=23% Similarity=0.167 Sum_probs=31.5
Q ss_pred CCcccEEEccCcc-cCCCCCccc-cCCCCCCEEEccCCc-ccccC-CcccccCCCccEEEccCCcc
Q 043038 56 TKRLEALKLNDNY-LQGELPDCW-MSDQNLKILKLSNNK-FIGNL-PNSFGSLAFLVWLDLGKNRL 117 (271)
Q Consensus 56 ~~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~-~~~~~-~~~~~~l~~L~~l~l~~n~l 117 (271)
+..|+.|+.+++. ++...-.++ .+..+|+.+.++.++ ++... ..--.+.+.|+.+++..+..
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~ 358 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGL 358 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccce
Confidence 5667777777664 221111122 244677777777765 22110 01112455677777766654
No 86
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=52.19 E-value=12 Score=32.65 Aligned_cols=151 Identities=19% Similarity=0.098 Sum_probs=81.5
Q ss_pred CCcccEEECcCCCCCCCcc-----ccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCC--CCccccC
Q 043038 7 FTQLLFRSLDSNNMSGLLP-----LISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGE--LPDCWMS 79 (271)
Q Consensus 7 ~~~L~~L~l~~n~~~~~~~-----~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~ 79 (271)
+..++.++.+++.-.+..+ ....+|+++.+++++--.... +...-.+++.|+.+++..+..... +...-.+
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~--ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG--FTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh--hhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 4567788888775432221 113589999999887311111 111112477899999988865422 2222246
Q ss_pred CCCCCEEEccCCcc-ccc----CCcccccCCCccEEEccCCcccc-ccCccccCCCCccEEecCCCCcccEEEeccCc-c
Q 043038 80 DQNLKILKLSNNKF-IGN----LPNSFGSLAFLVWLDLGKNRLFG-TIPATLKNCTALESLDVERFSRMVVLNLRSNK-F 152 (271)
Q Consensus 80 l~~L~~L~l~~n~~-~~~----~~~~~~~l~~L~~l~l~~n~l~~-~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~-l 152 (271)
++.|+.+.++.+.. ++. ....-+.+..+..+-+.++.... ..-+.+. .+++|+.+++.+++ +
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~-----------~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS-----------ICRNLERIELIDCQDV 439 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh-----------hCcccceeeeechhhh
Confidence 78899999997753 322 12223345667777777776431 1112223 34455566666664 3
Q ss_pred CCC-CchhhhcCccccEEe
Q 043038 153 HGP-LPTRFCDLAILQILD 170 (271)
Q Consensus 153 ~~~-~~~~~~~l~~L~~L~ 170 (271)
+.. +.....++++++...
T Consensus 440 tk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 440 TKEAISRFATHLPNIKVHA 458 (483)
T ss_pred hhhhhHHHHhhCccceehh
Confidence 322 222234556555443
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=43.53 E-value=15 Score=33.26 Aligned_cols=63 Identities=21% Similarity=0.204 Sum_probs=30.7
Q ss_pred CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCc--ccCCCCCccccC--CCCCCEEEccCCccc
Q 043038 28 SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDN--YLQGELPDCWMS--DQNLKILKLSNNKFI 94 (271)
Q Consensus 28 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~~~--l~~L~~L~l~~n~~~ 94 (271)
++.+..+.+++|.+... +.+.......|+|+.|+|++| .+. ....+.+ ..-|++|-+.+|.+.
T Consensus 217 ~p~i~sl~lsnNrL~~L--d~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHL--DALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred Ccceeeeecccchhhch--hhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccc
Confidence 44566666666665431 122222233566666666666 332 1111122 234666666666654
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=42.93 E-value=17 Score=32.91 Aligned_cols=61 Identities=28% Similarity=0.170 Sum_probs=31.6
Q ss_pred CCcccEEEccCcccCCC--CCccccCCCCCCEEEccCC--cccccCCcccc--cCCCccEEEccCCccc
Q 043038 56 TKRLEALKLNDNYLQGE--LPDCWMSDQNLKILKLSNN--KFIGNLPNSFG--SLAFLVWLDLGKNRLF 118 (271)
Q Consensus 56 ~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n--~~~~~~~~~~~--~l~~L~~l~l~~n~l~ 118 (271)
.+.+..+.+++|++... +...-...+.|..|+|++| .+. ...++. +...|+++.+.+|.+.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccc
Confidence 56666777777765421 1111223466777777777 332 111121 1234667777777664
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=24.91 E-value=58 Score=29.20 Aligned_cols=37 Identities=14% Similarity=0.043 Sum_probs=24.2
Q ss_pred HhhHhhhhhcCCcccc----cccHhhhccCCCCEEEccCCC
Q 043038 233 LNLVMVTIVSRNDLLK----NVPLEVRNLKATQSLNFSHNT 269 (271)
Q Consensus 233 ~~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~ 269 (271)
-+.+..|++++|...+ .+|...+.-.+++.+..+.|.
T Consensus 439 tqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~ 479 (553)
T KOG4242|consen 439 TQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNL 479 (553)
T ss_pred CcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCC
Confidence 3567888888888643 356666666666666665553
No 90
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=22.31 E-value=1.5e+02 Score=16.43 Aligned_cols=31 Identities=19% Similarity=0.042 Sum_probs=16.1
Q ss_pred CCccEEEccCCccccccchhhhhhccCCCcccEEEcc
Q 043038 29 SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLN 65 (271)
Q Consensus 29 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~ 65 (271)
++++.|.++++.-....+..++ .++++|.+.
T Consensus 12 ~~l~~L~~g~~fn~~i~~~~lP------~sl~~L~fg 42 (44)
T PF05725_consen 12 SSLKSLIFGSSFNQPIEPGSLP------NSLKSLSFG 42 (44)
T ss_pred CCCeEEEECCccCccCCCCccC------CCceEEEee
Confidence 3677888854443222233333 356666654
Done!