Query 043038
Match_columns 271
No_of_seqs 152 out of 1799
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 21:27:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043038.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043038hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.2E-30 1.8E-34 238.2 19.1 259 4-271 363-717 (768)
2 3rgz_A Protein brassinosteroid 100.0 5.5E-30 1.9E-34 238.1 15.1 268 4-271 314-693 (768)
3 3v47_A TOLL-like receptor 5B a 100.0 1.3E-28 4.5E-33 215.8 16.5 260 3-271 49-408 (455)
4 1ogq_A PGIP-2, polygalacturona 100.0 5.8E-29 2E-33 207.9 12.9 169 8-192 50-225 (313)
5 1ogq_A PGIP-2, polygalacturona 100.0 1.4E-28 4.9E-33 205.6 12.9 223 3-269 71-302 (313)
6 3v47_A TOLL-like receptor 5B a 100.0 4.4E-28 1.5E-32 212.4 13.8 242 3-251 74-412 (455)
7 2id5_A Lingo-1, leucine rich r 100.0 1.8E-27 6.1E-32 209.9 16.6 238 3-270 51-332 (477)
8 2id5_A Lingo-1, leucine rich r 99.9 2.5E-27 8.6E-32 209.0 13.8 255 8-271 32-309 (477)
9 3t6q_A CD180 antigen; protein- 99.9 4.3E-26 1.5E-30 206.7 19.9 256 4-270 274-559 (606)
10 3o6n_A APL1; leucine-rich repe 99.9 4.8E-26 1.6E-30 195.8 19.1 249 4-270 65-351 (390)
11 4fcg_A Uncharacterized protein 99.9 2.4E-26 8.2E-31 193.3 16.6 218 7-270 80-313 (328)
12 3t6q_A CD180 antigen; protein- 99.9 4.3E-26 1.5E-30 206.7 16.7 243 3-251 296-564 (606)
13 4eco_A Uncharacterized protein 99.9 8.4E-27 2.9E-31 212.4 11.5 264 3-270 242-578 (636)
14 3oja_B Anopheles plasmodium-re 99.9 1.2E-25 4.2E-30 203.4 19.0 249 4-270 71-357 (597)
15 1xku_A Decorin; proteoglycan, 99.9 1.4E-25 4.9E-30 188.7 17.6 174 9-192 32-220 (330)
16 3zyj_A Leucine-rich repeat-con 99.9 1E-25 3.5E-30 196.8 17.3 229 10-270 45-291 (440)
17 3zyi_A Leucine-rich repeat-con 99.9 9.1E-26 3.1E-30 197.8 16.9 229 10-270 56-302 (452)
18 1ozn_A Reticulon 4 receptor; N 99.9 1.4E-25 4.7E-30 185.0 16.5 219 11-270 14-237 (285)
19 2z80_A TOLL-like receptor 2, v 99.9 3E-26 1E-30 194.6 12.4 256 9-271 32-314 (353)
20 3vq2_A TLR4, TOLL-like recepto 99.9 1.7E-25 5.8E-30 202.7 18.0 112 3-118 51-166 (606)
21 4eco_A Uncharacterized protein 99.9 2.2E-26 7.5E-31 209.7 11.9 251 3-271 268-600 (636)
22 2z66_A Variable lymphocyte rec 99.9 6.8E-26 2.3E-30 188.6 13.1 221 9-271 29-261 (306)
23 2ft3_A Biglycan; proteoglycan, 99.9 2.2E-25 7.4E-30 187.7 16.2 225 9-270 34-276 (332)
24 1xku_A Decorin; proteoglycan, 99.9 6.6E-25 2.2E-29 184.6 16.5 249 8-269 52-330 (330)
25 4g8a_A TOLL-like receptor 4; l 99.9 4.1E-25 1.4E-29 200.7 16.2 113 3-119 71-187 (635)
26 2z7x_B TOLL-like receptor 1, v 99.9 3.3E-25 1.1E-29 197.4 15.2 43 228-270 368-411 (520)
27 1ziw_A TOLL-like receptor 3; i 99.9 3.5E-25 1.2E-29 203.2 15.9 254 8-270 25-365 (680)
28 2z7x_B TOLL-like receptor 1, v 99.9 1.9E-25 6.6E-30 198.9 13.6 85 3-94 40-128 (520)
29 4fmz_A Internalin; leucine ric 99.9 2.2E-24 7.6E-29 182.5 19.2 246 2-271 60-346 (347)
30 3j0a_A TOLL-like receptor 5; m 99.9 2.6E-25 8.9E-30 208.6 14.3 260 3-271 43-375 (844)
31 4ecn_A Leucine-rich repeat pro 99.9 5.4E-25 1.8E-29 205.1 15.4 254 6-270 489-818 (876)
32 2z81_A CD282 antigen, TOLL-lik 99.9 4.2E-25 1.4E-29 197.9 14.0 148 3-154 45-210 (549)
33 4fmz_A Internalin; leucine ric 99.9 4.2E-24 1.5E-28 180.8 19.3 225 4-247 84-346 (347)
34 3vq2_A TLR4, TOLL-like recepto 99.9 5.2E-25 1.8E-29 199.5 14.3 251 4-271 281-558 (606)
35 1ziw_A TOLL-like receptor 3; i 99.9 3.6E-24 1.2E-28 196.5 19.5 250 10-268 6-306 (680)
36 3o6n_A APL1; leucine-rich repe 99.9 1.1E-24 3.9E-29 187.2 15.0 249 6-271 43-308 (390)
37 4ecn_A Leucine-rich repeat pro 99.9 1.7E-25 5.8E-30 208.5 10.2 129 55-186 489-640 (876)
38 2ft3_A Biglycan; proteoglycan, 99.9 1E-24 3.5E-29 183.6 14.0 248 8-269 54-331 (332)
39 3j0a_A TOLL-like receptor 5; m 99.9 1.2E-24 4E-29 204.2 15.3 258 6-271 22-351 (844)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.1E-24 3.9E-29 195.7 14.0 137 9-152 32-181 (562)
41 4fcg_A Uncharacterized protein 99.9 4.4E-24 1.5E-28 179.5 16.3 206 29-271 81-290 (328)
42 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.7E-24 6E-29 194.5 14.1 86 3-95 71-160 (562)
43 3oja_B Anopheles plasmodium-re 99.9 2.6E-24 8.8E-29 194.8 15.2 249 6-271 49-314 (597)
44 2o6q_A Variable lymphocyte rec 99.9 1.9E-23 6.6E-28 170.8 18.7 201 9-270 17-217 (270)
45 1ozn_A Reticulon 4 receptor; N 99.9 9.7E-24 3.3E-28 173.9 16.5 233 6-269 30-285 (285)
46 2z62_A TOLL-like receptor 4, v 99.9 8.5E-24 2.9E-28 173.4 15.5 218 12-271 11-237 (276)
47 1p9a_G Platelet glycoprotein I 99.9 2E-23 6.8E-28 172.5 17.7 202 4-270 6-207 (290)
48 1wwl_A Monocyte differentiatio 99.9 1.9E-25 6.4E-30 186.6 3.9 233 5-271 40-309 (312)
49 1o6v_A Internalin A; bacterial 99.9 7.9E-23 2.7E-27 179.8 18.9 164 1-177 61-256 (466)
50 2z63_A TOLL-like receptor 4, v 99.9 1.5E-23 5E-28 188.6 14.0 124 4-131 48-175 (570)
51 2z81_A CD282 antigen, TOLL-lik 99.9 8.9E-24 3.1E-28 189.2 12.3 166 8-178 26-210 (549)
52 2z63_A TOLL-like receptor 4, v 99.9 1.9E-23 6.4E-28 187.9 14.3 232 3-271 277-531 (570)
53 3rfs_A Internalin B, repeat mo 99.9 4.4E-23 1.5E-27 168.9 14.7 207 4-260 37-248 (272)
54 3bz5_A Internalin-J, INLJ; leu 99.9 1E-22 3.5E-27 178.4 17.0 38 231-271 315-352 (457)
55 3zyi_A Leucine-rich repeat-con 99.9 8E-23 2.7E-27 179.1 15.7 188 8-199 75-281 (452)
56 1o6v_A Internalin A; bacterial 99.9 1.9E-22 6.6E-27 177.3 17.9 161 4-177 86-278 (466)
57 3zyj_A Leucine-rich repeat-con 99.9 1.4E-22 4.9E-27 176.8 15.4 188 8-199 64-270 (440)
58 2z66_A Variable lymphocyte rec 99.9 6E-22 2.1E-26 164.7 18.2 226 4-258 48-298 (306)
59 3bz5_A Internalin-J, INLJ; leu 99.9 3.6E-22 1.2E-26 174.9 17.4 248 1-271 57-331 (457)
60 3oja_A Leucine-rich immune mol 99.9 6.8E-23 2.3E-27 181.0 12.3 211 6-271 32-250 (487)
61 3o53_A Protein LRIM1, AGAP0063 99.9 7.1E-23 2.4E-27 171.3 11.7 211 6-271 32-250 (317)
62 1jl5_A Outer protein YOPM; leu 99.9 2.3E-22 7.8E-27 176.1 14.4 39 233-271 356-409 (454)
63 4glp_A Monocyte differentiatio 99.9 2E-22 7E-27 168.0 10.9 218 9-271 65-307 (310)
64 2z80_A TOLL-like receptor 2, v 99.9 1.4E-22 4.7E-27 172.0 10.0 239 8-251 52-318 (353)
65 3o53_A Protein LRIM1, AGAP0063 99.9 4.5E-23 1.5E-27 172.5 6.3 204 3-245 53-273 (317)
66 3rfs_A Internalin B, repeat mo 99.9 5.4E-22 1.8E-26 162.4 12.3 198 8-270 19-217 (272)
67 3m19_A Variable lymphocyte rec 99.9 4.1E-21 1.4E-25 155.3 15.1 163 8-185 14-176 (251)
68 1z7x_W Ribonuclease inhibitor; 99.9 1.2E-23 4.1E-28 184.4 -0.2 262 9-271 86-411 (461)
69 2ca6_A RAN GTPase-activating p 99.9 5.6E-23 1.9E-27 176.5 3.4 235 4-271 28-316 (386)
70 3m19_A Variable lymphocyte rec 99.9 1.2E-20 4.1E-25 152.6 16.9 156 8-178 35-193 (251)
71 3oja_A Leucine-rich immune mol 99.9 3.5E-22 1.2E-26 176.4 8.5 176 3-192 53-241 (487)
72 1jl5_A Outer protein YOPM; leu 99.9 8.7E-21 3E-25 166.0 16.9 235 8-271 91-350 (454)
73 2z62_A TOLL-like receptor 4, v 99.9 3E-21 1E-25 158.2 12.5 156 8-178 28-191 (276)
74 1z7x_W Ribonuclease inhibitor; 99.9 2.3E-23 7.8E-28 182.7 -0.2 174 4-177 24-240 (461)
75 3goz_A Leucine-rich repeat-con 99.9 9.4E-23 3.2E-27 173.6 3.5 229 10-270 24-296 (362)
76 1h6u_A Internalin H; cell adhe 99.9 7.3E-21 2.5E-25 158.4 14.7 190 5-270 38-229 (308)
77 1wwl_A Monocyte differentiatio 99.9 2.4E-22 8.1E-27 167.7 5.3 201 6-248 93-310 (312)
78 2xwt_C Thyrotropin receptor; s 99.9 1.6E-21 5.5E-26 156.5 9.3 202 23-268 25-236 (239)
79 3g06_A SSPH2 (leucine-rich rep 99.8 2.5E-20 8.6E-25 168.4 17.2 225 8-271 61-297 (622)
80 2o6s_A Variable lymphocyte rec 99.8 1.8E-20 6.1E-25 147.2 13.8 182 10-259 9-190 (208)
81 2xwt_C Thyrotropin receptor; s 99.8 2.1E-20 7E-25 150.0 12.7 123 8-136 31-163 (239)
82 2o6q_A Variable lymphocyte rec 99.8 1.5E-19 5.2E-24 147.6 17.2 176 8-198 37-219 (270)
83 1p9a_G Platelet glycoprotein I 99.8 5.9E-20 2E-24 151.6 14.0 177 28-271 9-185 (290)
84 4glp_A Monocyte differentiatio 99.8 5.6E-21 1.9E-25 159.3 6.7 203 30-271 65-285 (310)
85 3cvr_A Invasion plasmid antige 99.8 2.2E-19 7.5E-24 160.5 16.1 184 9-271 60-243 (571)
86 3g06_A SSPH2 (leucine-rich rep 99.8 3.3E-19 1.1E-23 161.1 16.5 222 9-271 41-274 (622)
87 2ast_B S-phase kinase-associat 99.8 1.2E-20 4E-25 158.9 6.3 172 8-192 70-251 (336)
88 2v70_A SLIT-2, SLIT homolog 2 99.8 9.6E-19 3.3E-23 138.6 14.6 155 10-178 13-167 (220)
89 2ca6_A RAN GTPase-activating p 99.8 9.3E-21 3.2E-25 162.6 3.1 222 28-271 31-287 (386)
90 4g8a_A TOLL-like receptor 4; l 99.8 4E-19 1.4E-23 161.3 13.9 213 12-267 35-258 (635)
91 1h6u_A Internalin H; cell adhe 99.8 2E-18 6.7E-23 143.7 16.0 163 1-177 56-230 (308)
92 2v9t_B SLIT homolog 2 protein 99.8 1.3E-18 4.6E-23 137.8 14.3 152 11-177 14-165 (220)
93 3e6j_A Variable lymphocyte rec 99.8 3.5E-18 1.2E-22 136.2 15.6 153 10-178 21-173 (229)
94 2o6s_A Variable lymphocyte rec 99.8 1.1E-18 3.8E-23 137.0 11.6 161 7-189 27-190 (208)
95 3goz_A Leucine-rich repeat-con 99.8 6.5E-20 2.2E-24 156.1 3.2 229 12-269 2-264 (362)
96 2xot_A Amphoterin-induced prot 99.8 5.6E-19 1.9E-23 150.2 8.8 153 11-177 21-176 (361)
97 1h6t_A Internalin B; cell adhe 99.8 9.6E-19 3.3E-23 144.5 10.0 125 28-177 45-169 (291)
98 2ast_B S-phase kinase-associat 99.8 1.1E-19 3.9E-24 152.8 4.3 218 9-268 48-282 (336)
99 2xot_A Amphoterin-induced prot 99.8 5E-18 1.7E-22 144.3 13.0 155 10-177 41-202 (361)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 1.1E-17 3.7E-22 132.5 13.3 139 30-186 12-151 (220)
101 3ogk_B Coronatine-insensitive 99.8 1.9E-19 6.5E-24 162.5 3.3 185 6-192 162-407 (592)
102 2v9t_B SLIT homolog 2 protein 99.8 9.3E-18 3.2E-22 132.9 12.6 137 30-185 12-149 (220)
103 4ezg_A Putative uncharacterize 99.8 6.1E-18 2.1E-22 131.6 11.4 152 5-177 41-194 (197)
104 4ay9_X Follicle-stimulating ho 99.7 6.8E-18 2.3E-22 142.9 11.7 182 11-198 12-216 (350)
105 4ezg_A Putative uncharacterize 99.7 1E-17 3.4E-22 130.4 11.1 151 56-271 43-194 (197)
106 3e6j_A Variable lymphocyte rec 99.7 3.5E-17 1.2E-21 130.4 13.8 133 29-180 19-151 (229)
107 1h6t_A Internalin B; cell adhe 99.7 2.6E-17 9E-22 135.8 13.4 160 4-177 42-213 (291)
108 1m9s_A Internalin B; cell inva 99.7 7.5E-18 2.6E-22 152.0 10.3 147 6-177 41-188 (605)
109 1m9s_A Internalin B; cell inva 99.7 8.7E-18 3E-22 151.6 9.9 144 10-178 23-167 (605)
110 3cvr_A Invasion plasmid antige 99.7 1.5E-16 5.2E-21 142.2 13.9 147 7-190 79-232 (571)
111 1xeu_A Internalin C; cellular 99.7 5.9E-17 2E-21 131.8 8.5 146 7-178 18-164 (263)
112 3ogk_B Coronatine-insensitive 99.7 2.8E-18 9.5E-23 154.9 0.6 183 6-192 110-322 (592)
113 1xeu_A Internalin C; cellular 99.7 3.3E-16 1.1E-20 127.3 12.0 151 3-179 36-187 (263)
114 4b8c_D Glucose-repressible alc 99.7 2.3E-17 7.8E-22 152.1 5.0 161 8-186 173-338 (727)
115 2ell_A Acidic leucine-rich nuc 99.7 4.6E-16 1.6E-20 117.8 11.1 137 28-183 23-165 (168)
116 1w8a_A SLIT protein; signaling 99.7 9.6E-16 3.3E-20 118.7 13.1 132 11-156 11-142 (192)
117 4ay9_X Follicle-stimulating ho 99.7 4.6E-16 1.6E-20 131.6 11.4 100 30-136 10-111 (350)
118 1w8a_A SLIT protein; signaling 99.6 1.2E-15 4.1E-20 118.1 10.7 132 30-179 9-141 (192)
119 2wfh_A SLIT homolog 2 protein 99.6 7.3E-15 2.5E-19 113.8 13.8 128 11-154 13-140 (193)
120 1dce_A Protein (RAB geranylger 99.6 9.8E-18 3.4E-22 150.3 -3.1 193 5-265 346-567 (567)
121 2wfh_A SLIT homolog 2 protein 99.6 5.3E-15 1.8E-19 114.6 11.8 129 30-177 11-139 (193)
122 2p1m_B Transport inhibitor res 99.6 8.9E-17 3E-21 145.0 2.0 40 231-270 478-518 (594)
123 2je0_A Acidic leucine-rich nuc 99.6 1.8E-15 6.3E-20 112.1 8.7 127 29-172 17-148 (149)
124 2ell_A Acidic leucine-rich nuc 99.6 4.7E-15 1.6E-19 112.2 10.3 131 6-153 22-160 (168)
125 2o6r_A Variable lymphocyte rec 99.6 1.4E-14 4.7E-19 110.6 13.0 105 10-118 9-113 (177)
126 3sb4_A Hypothetical leucine ri 99.6 2E-15 6.7E-20 126.7 8.5 182 56-265 100-328 (329)
127 2je0_A Acidic leucine-rich nuc 99.6 3.9E-15 1.3E-19 110.3 9.1 125 6-136 15-147 (149)
128 2o6r_A Variable lymphocyte rec 99.6 1.8E-14 6.1E-19 109.9 11.9 133 30-180 8-140 (177)
129 1dce_A Protein (RAB geranylger 99.6 2.1E-17 7.1E-22 148.2 -6.0 175 29-271 349-546 (567)
130 4b8c_D Glucose-repressible alc 99.6 1.8E-15 6.2E-20 139.5 5.8 139 28-185 223-362 (727)
131 2p1m_B Transport inhibitor res 99.6 6.2E-16 2.1E-20 139.5 1.7 107 6-115 103-221 (594)
132 1a9n_A U2A', U2A'; complex (nu 99.5 2E-14 6.8E-19 109.6 9.1 130 28-177 18-153 (176)
133 1a9n_A U2A', U2A'; complex (nu 99.5 4.2E-14 1.4E-18 107.8 9.8 112 3-123 14-130 (176)
134 3g39_A Variable lymphocyte rec 99.5 2.9E-13 9.9E-18 102.5 11.3 104 11-118 12-115 (170)
135 2r9u_A Variable lymphocyte rec 99.5 7.5E-13 2.6E-17 100.7 11.8 61 58-118 34-94 (174)
136 1ds9_A Outer arm dynein; leuci 99.5 1.1E-15 3.7E-20 118.9 -4.2 107 56-178 47-154 (198)
137 1ds9_A Outer arm dynein; leuci 99.4 5E-15 1.7E-19 115.2 -3.1 151 4-177 14-185 (198)
138 3g39_A Variable lymphocyte rec 99.4 2.3E-12 7.8E-17 97.6 10.7 107 30-154 10-116 (170)
139 2r9u_A Variable lymphocyte rec 99.4 5.1E-12 1.7E-16 96.0 10.8 104 59-177 14-118 (174)
140 3sb4_A Hypothetical leucine ri 99.3 1E-12 3.6E-17 110.0 5.4 170 74-271 86-310 (329)
141 3un9_A NLR family member X1; l 99.3 6.3E-14 2.1E-18 119.3 -3.2 138 29-177 72-224 (372)
142 3un9_A NLR family member X1; l 99.3 7.6E-13 2.6E-17 112.6 1.9 164 7-184 71-259 (372)
143 4fdw_A Leucine rich hypothetic 99.3 6.8E-11 2.3E-15 101.5 13.0 130 58-192 158-304 (401)
144 4fdw_A Leucine rich hypothetic 99.2 1.5E-10 5.3E-15 99.3 13.4 227 4-269 132-381 (401)
145 2ifg_A High affinity nerve gro 99.1 1.5E-10 5.2E-15 97.4 9.8 106 32-155 11-118 (347)
146 2ifg_A High affinity nerve gro 99.1 5.8E-10 2E-14 93.9 10.9 102 11-118 11-116 (347)
147 2ra8_A Uncharacterized protein 98.9 1.7E-09 6E-14 91.4 5.9 143 28-178 138-293 (362)
148 2ra8_A Uncharacterized protein 98.9 1.8E-09 6.2E-14 91.3 5.6 187 30-271 108-320 (362)
149 1io0_A Tropomodulin; LRR prote 98.7 2.8E-09 9.6E-14 81.6 2.1 118 29-153 36-164 (185)
150 4fs7_A Uncharacterized protein 98.7 1.1E-07 3.8E-12 81.4 10.9 39 229-268 338-376 (394)
151 1io0_A Tropomodulin; LRR prote 98.5 2.8E-08 9.6E-13 76.0 2.9 121 46-177 25-164 (185)
152 4gt6_A Cell surface protein; l 98.5 1.4E-06 4.9E-11 74.4 13.4 38 230-268 330-367 (394)
153 3rw6_A Nuclear RNA export fact 98.4 1.8E-07 6.1E-12 75.4 4.4 39 80-118 169-209 (267)
154 4fs7_A Uncharacterized protein 98.4 2E-06 6.9E-11 73.5 10.0 133 100-263 248-393 (394)
155 3rw6_A Nuclear RNA export fact 98.2 3.8E-07 1.3E-11 73.4 2.8 99 34-135 148-257 (267)
156 3e4g_A ATP synthase subunit S, 98.2 4.3E-07 1.5E-11 68.2 2.0 13 106-118 62-74 (176)
157 3e4g_A ATP synthase subunit S, 98.2 7.3E-07 2.5E-11 66.9 2.5 34 82-115 62-95 (176)
158 4gt6_A Cell surface protein; l 98.1 4.5E-05 1.5E-09 65.1 12.4 39 229-268 306-344 (394)
159 4h09_A Hypothetical leucine ri 97.8 0.00059 2E-08 57.6 13.7 13 4-16 65-77 (379)
160 1pgv_A TMD-1, tropomodulin TMD 97.7 1.3E-05 4.5E-10 61.2 2.0 87 29-115 41-136 (197)
161 4h09_A Hypothetical leucine ri 97.6 0.0014 4.8E-08 55.3 14.2 36 230-266 306-341 (379)
162 1pgv_A TMD-1, tropomodulin TMD 97.6 4.3E-05 1.5E-09 58.4 3.5 123 47-177 31-170 (197)
163 3rfe_A Platelet glycoprotein I 96.8 0.0028 9.6E-08 44.9 6.4 36 58-93 32-67 (130)
164 3rfe_A Platelet glycoprotein I 96.7 0.0027 9.3E-08 45.0 5.2 36 82-117 32-67 (130)
165 2lz0_A Uncharacterized protein 66.2 8.7 0.0003 25.3 4.2 45 69-114 8-52 (100)
166 2lz0_A Uncharacterized protein 55.3 22 0.00075 23.3 4.7 40 52-92 15-54 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=5.2e-30 Score=238.23 Aligned_cols=259 Identities=28% Similarity=0.373 Sum_probs=174.4
Q ss_pred ccCCC-cccEEECcCCCCCCCcccc-----CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccc
Q 043038 4 LTKFT-QLLFRSLDSNNMSGLLPLI-----SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCW 77 (271)
Q Consensus 4 ~~~~~-~L~~L~l~~n~~~~~~~~~-----~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 77 (271)
+.+++ +|+.|++++|.+.+..|.. +++|++|++++|.+++.+|..+.. +++|++|++++|.+++..|..|
T Consensus 363 l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~----l~~L~~L~Ls~N~l~~~~p~~l 438 (768)
T 3rgz_A 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN----CSELVSLHLSFNYLSGTIPSSL 438 (768)
T ss_dssp HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG----CTTCCEEECCSSEEESCCCGGG
T ss_pred HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc----CCCCCEEECcCCcccCcccHHH
Confidence 34454 6777777777776655544 245777777777777666655544 7777777777777776677777
Q ss_pred cCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec-------------CCCCcccE
Q 043038 78 MSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV-------------ERFSRMVV 144 (271)
Q Consensus 78 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l-------------~~~~~L~~ 144 (271)
..+++|+.|++++|.+++..|..+..+++|+.+++++|.+.+..|..+..+++|+.|++ ..+++|+.
T Consensus 439 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 518 (768)
T 3rgz_A 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCE
Confidence 77777777777777777667777777777777777777777667777777777777766 33456777
Q ss_pred EEeccCccCCCCchhhhcCccccEEeccCCccceecCccccccc------------------------------------
Q 043038 145 LNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVT------------------------------------ 188 (271)
Q Consensus 145 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~------------------------------------ 188 (271)
|++++|.+++.+|..+..+++|+.|++++|.++|.+|..+....
T Consensus 519 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (768)
T 3rgz_A 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG 598 (768)
T ss_dssp EECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTT
T ss_pred EECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccc
Confidence 77777777777777777777777777777777766665543321
Q ss_pred ----------------------------------CCcc----ccccccccccccccccchhhhhhhhceec---cccchh
Q 043038 189 ----------------------------------GMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVV---SREEVV 227 (271)
Q Consensus 189 ----------------------------------~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 227 (271)
.++. .|.+.+. +|..+. ....+..+++. ..+.++
T Consensus 599 ~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~----ip~~l~-~l~~L~~L~Ls~N~l~g~ip 673 (768)
T 3rgz_A 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY----IPKEIG-SMPYLFILNLGHNDISGSIP 673 (768)
T ss_dssp CCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSC----CCGGGG-GCTTCCEEECCSSCCCSCCC
T ss_pred ccchhhhccccccccccccceecccCchhhhccccccEEECcCCccccc----CCHHHh-ccccCCEEeCcCCccCCCCC
Confidence 1111 2333332 222211 11112222221 334566
Q ss_pred hHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038 228 EYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271 (271)
Q Consensus 228 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 271 (271)
..++.+++|+.|||++|++.+.+|..+..++.|++|++++|+++
T Consensus 674 ~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred hHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 66678899999999999999899999999999999999999763
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=5.5e-30 Score=238.07 Aligned_cols=268 Identities=27% Similarity=0.356 Sum_probs=194.5
Q ss_pred ccCCCcccEEECcCCCCCCCcccc----CCCccEEEccCCccccccchhhhhh---------------------ccC--C
Q 043038 4 LTKFTQLLFRSLDSNNMSGLLPLI----SSNLVYLGLSDNSFLGSISHFLCDK---------------------INE--T 56 (271)
Q Consensus 4 ~~~~~~L~~L~l~~n~~~~~~~~~----~~~L~~L~l~~n~~~~~~~~~~~~~---------------------~~~--~ 56 (271)
|+++++|++|++++|.+.+.+|.. +++|++|++++|.+++.+|..+... +.. +
T Consensus 314 ~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 393 (768)
T 3rgz_A 314 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393 (768)
T ss_dssp GGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTT
T ss_pred HhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhccc
Confidence 455666666666666665444432 3455666666665554444433321 111 5
Q ss_pred CcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec
Q 043038 57 KRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV 136 (271)
Q Consensus 57 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l 136 (271)
+.|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|+.+++++|.+.+.+|..+..+++|+.|++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence 67888888888888778888899999999999999998888888999999999999999998888998999999999988
Q ss_pred -------------CCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccc
Q 043038 137 -------------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRS 199 (271)
Q Consensus 137 -------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~ 199 (271)
..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..++.|+. .|.+.+.
T Consensus 474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB
T ss_pred cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCc
Confidence 44678999999999999899999999999999999999999999999999888887 5655543
Q ss_pred cccccccccc-----------------------------------------------------------------hhhhh
Q 043038 200 AQQHLHVPLD-----------------------------------------------------------------VDVIL 214 (271)
Q Consensus 200 ~~~~~~~~~~-----------------------------------------------------------------~~~~~ 214 (271)
-+..+..... .....
T Consensus 554 ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~ 633 (768)
T 3rgz_A 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633 (768)
T ss_dssp CCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBC
T ss_pred CChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccc
Confidence 1111100000 00000
Q ss_pred hhhceec---cccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038 215 MEKASVV---SREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271 (271)
Q Consensus 215 ~~~~~~~---~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 271 (271)
+..+++. ..+.++..++.+++|+.|+|++|.+.+.+|..|..+++|+.||+++|+++
T Consensus 634 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693 (768)
T ss_dssp CCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred ccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc
Confidence 1111111 23345666677888888888888888888888888888888888888764
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=1.3e-28 Score=215.75 Aligned_cols=260 Identities=20% Similarity=0.195 Sum_probs=148.7
Q ss_pred CccCCCcccEEECcCCCCCCCccc-c---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCcc--
Q 043038 3 NLTKFTQLLFRSLDSNNMSGLLPL-I---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDC-- 76 (271)
Q Consensus 3 ~~~~~~~L~~L~l~~n~~~~~~~~-~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-- 76 (271)
+|+++++|++|++++|.+.+.++. . +++|++|++++|.+++..|..+. ++++|++|++++|.+++..+..
T Consensus 49 ~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~ 124 (455)
T 3v47_A 49 SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN----GLANLEVLTLTQCNLDGAVLSGNF 124 (455)
T ss_dssp TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTT----TCTTCCEEECTTSCCBTHHHHSST
T ss_pred HhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhcc----CcccCCEEeCCCCCCCccccCccc
Confidence 355666666666666666544322 2 34666666666666554343333 3666666666666665433332
Q ss_pred ccCCCCCCEEEccCCcccccCCcc-cccCCCccEEEccCCccccccCccccCC---------------------------
Q 043038 77 WMSDQNLKILKLSNNKFIGNLPNS-FGSLAFLVWLDLGKNRLFGTIPATLKNC--------------------------- 128 (271)
Q Consensus 77 ~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~l~l~~n~l~~~~~~~~~~l--------------------------- 128 (271)
|..+++|++|++++|.+++..|.. +..+++|+.+++++|.+.+..+..+..+
T Consensus 125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~ 204 (455)
T 3v47_A 125 FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204 (455)
T ss_dssp TTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHH
T ss_pred ccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccc
Confidence 566666666666666666444544 5566666666666666654444433332
Q ss_pred -------CCccEEecCCC----------------------------------------------------CcccEEEecc
Q 043038 129 -------TALESLDVERF----------------------------------------------------SRMVVLNLRS 149 (271)
Q Consensus 129 -------~~L~~L~l~~~----------------------------------------------------~~L~~L~l~~ 149 (271)
++|+.|+++.. ++|+.|++++
T Consensus 205 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 284 (455)
T 3v47_A 205 CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK 284 (455)
T ss_dssp HCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCS
T ss_pred cccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecC
Confidence 33444444111 3456666666
Q ss_pred CccCCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceec---c
Q 043038 150 NKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVV---S 222 (271)
Q Consensus 150 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 222 (271)
|.+++..|..+..+++|+.|++++|++++..|..+..++.|+. .|.+.+.....+. ....++.+++. .
T Consensus 285 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~Ls~N~l 359 (455)
T 3v47_A 285 SKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE-----NLDKLEVLDLSYNHI 359 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGT-----TCTTCCEEECCSSCC
T ss_pred ccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhc-----CcccCCEEECCCCcc
Confidence 6666555666777777777777777777666666766666665 4555443211111 11122222221 1
Q ss_pred ccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038 223 REEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271 (271)
Q Consensus 223 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 271 (271)
....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus 360 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 360 RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 2222444566777788888887777655556677788888888877764
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=5.8e-29 Score=207.94 Aligned_cols=169 Identities=24% Similarity=0.398 Sum_probs=129.2
Q ss_pred CcccEEECcCCCCCC--Ccccc---CCCccEEEccC-CccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCC
Q 043038 8 TQLLFRSLDSNNMSG--LLPLI---SSNLVYLGLSD-NSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQ 81 (271)
Q Consensus 8 ~~L~~L~l~~n~~~~--~~~~~---~~~L~~L~l~~-n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 81 (271)
.+++.|++++|.+.+ .+|.. +++|++|++++ |.+.+.+|..+.. +++|++|++++|.+++..|..|..++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~----l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK----LTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG----CTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc----CCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 578999999999988 67765 57999999995 8888777776655 89999999999999878899999999
Q ss_pred CCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCC-CccEEecCCCCcccEEEeccCccCCCCchhh
Q 043038 82 NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCT-ALESLDVERFSRMVVLNLRSNKFHGPLPTRF 160 (271)
Q Consensus 82 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~-~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~ 160 (271)
+|++|++++|.+++..|..+..+++|+.|++++|.+.+.+|..+..++ +|+.|+ +++|.+++..|..+
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~-----------L~~N~l~~~~~~~~ 194 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT-----------ISRNRLTGKIPPTF 194 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE-----------CCSSEEEEECCGGG
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEE-----------CcCCeeeccCChHH
Confidence 999999999999988888999999999999999999888888888776 666555 45555544444444
Q ss_pred hcCccccEEeccCCccceecCcccccccCCcc
Q 043038 161 CDLAILQILDIADNNLSGAIPNYINNVTGMVT 192 (271)
Q Consensus 161 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 192 (271)
..+. |+.|++++|.+++..|..+..++.|+.
T Consensus 195 ~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 225 (313)
T 1ogq_A 195 ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQK 225 (313)
T ss_dssp GGCC-CSEEECCSSEEEECCGGGCCTTSCCSE
T ss_pred hCCc-ccEEECcCCcccCcCCHHHhcCCCCCE
Confidence 4444 555555555554444444444444443
No 5
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=1.4e-28 Score=205.58 Aligned_cols=223 Identities=26% Similarity=0.392 Sum_probs=180.2
Q ss_pred CccCCCcccEEECcC-CCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCcccc
Q 043038 3 NLTKFTQLLFRSLDS-NNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWM 78 (271)
Q Consensus 3 ~~~~~~~L~~L~l~~-n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 78 (271)
+|+++++|++|++++ |.+.+.+|.. +++|++|++++|.+++.+|..+.. +++|++|++++|.+++..|..|.
T Consensus 71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~----l~~L~~L~Ls~N~l~~~~p~~~~ 146 (313)
T 1ogq_A 71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ----IKTLVTLDFSYNALSGTLPPSIS 146 (313)
T ss_dssp GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG----CTTCCEEECCSSEEESCCCGGGG
T ss_pred hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC----CCCCCEEeCCCCccCCcCChHHh
Confidence 578999999999995 9998888876 579999999999998777776655 99999999999999988999999
Q ss_pred CCCCCCEEEccCCcccccCCcccccCC-CccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCc
Q 043038 79 SDQNLKILKLSNNKFIGNLPNSFGSLA-FLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLP 157 (271)
Q Consensus 79 ~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~ 157 (271)
.+++|++|++++|++++..|..+..++ +|+.+++++|.+.+..|..+..++ | +.|++++|.+++..|
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L-----------~~L~Ls~N~l~~~~~ 214 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L-----------AFVDLSRNMLEGDAS 214 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C-----------SEEECCSSEEEECCG
T ss_pred cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c-----------cEEECcCCcccCcCC
Confidence 999999999999999988999999988 999999999999988888877664 4 455578888877777
Q ss_pred hhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceeccccchhhHHHHH
Q 043038 158 TRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEIL 233 (271)
Q Consensus 158 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (271)
..+..+++|+.|++++|.+++..|. +..++.|+. .|.+.+. ++..+..+
T Consensus 215 ~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~--------------------------~p~~l~~l 267 (313)
T 1ogq_A 215 VLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGT--------------------------LPQGLTQL 267 (313)
T ss_dssp GGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEEC--------------------------CCGGGGGC
T ss_pred HHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCc--------------------------CChHHhcC
Confidence 7778888888888888888754443 555555554 3444432 11222456
Q ss_pred hhHhhhhhcCCcccccccHhhhccCCCCEEEccCCC
Q 043038 234 NLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNT 269 (271)
Q Consensus 234 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 269 (271)
++|+.|++++|.+.+.+|.. ..+++|+.+++++|.
T Consensus 268 ~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 268 KFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp TTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred cCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 77888899999988878876 788888888888885
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=4.4e-28 Score=212.43 Aligned_cols=242 Identities=17% Similarity=0.202 Sum_probs=162.6
Q ss_pred CccCCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCcc-cc
Q 043038 3 NLTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDC-WM 78 (271)
Q Consensus 3 ~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~ 78 (271)
+|+++++|++|++++|.+.+..|.. +++|++|++++|.+++.++.. ..+.++++|++|++++|.+++..|.. +.
T Consensus 74 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 151 (455)
T 3v47_A 74 TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSG--NFFKPLTSLEMLVLRDNNIKKIQPASFFL 151 (455)
T ss_dssp TTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHS--STTTTCTTCCEEECCSSBCCSCCCCGGGG
T ss_pred cccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCc--ccccCcccCCEEECCCCccCccCcccccC
Confidence 4788999999999999998777765 468999999999987643322 22556899999999999998666665 78
Q ss_pred CCCCCCEEEccCCcccccCCcccccC----------------------------------CCccEEEccCCccccccCcc
Q 043038 79 SDQNLKILKLSNNKFIGNLPNSFGSL----------------------------------AFLVWLDLGKNRLFGTIPAT 124 (271)
Q Consensus 79 ~l~~L~~L~l~~n~~~~~~~~~~~~l----------------------------------~~L~~l~l~~n~l~~~~~~~ 124 (271)
.+++|++|++++|.+++..+..+..+ ++|+.|++++|.+.+..|..
T Consensus 152 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 231 (455)
T 3v47_A 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR 231 (455)
T ss_dssp GCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHH
T ss_pred CCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhh
Confidence 89999999999999886655544433 56778888887765443332
Q ss_pred ccC---------------------------------------CCCccEEec-------------CCCCcccEEEeccCcc
Q 043038 125 LKN---------------------------------------CTALESLDV-------------ERFSRMVVLNLRSNKF 152 (271)
Q Consensus 125 ~~~---------------------------------------l~~L~~L~l-------------~~~~~L~~L~l~~n~l 152 (271)
+.. .++++.+++ ..+++|+.|++++|.+
T Consensus 232 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 311 (455)
T 3v47_A 232 FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI 311 (455)
T ss_dssp HHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred hhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcc
Confidence 211 134556655 3456677777777777
Q ss_pred CCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceec---cccc
Q 043038 153 HGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVV---SREE 225 (271)
Q Consensus 153 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 225 (271)
++..|..+..+++|+.|++++|.+++..+..+..++.|+. .|.+.+.....+. ....+..+++. ....
T Consensus 312 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~L~~N~l~~~ 386 (455)
T 3v47_A 312 NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL-----GLPNLKELALDTNQLKSV 386 (455)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT-----TCTTCCEEECCSSCCSCC
T ss_pred cccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc-----ccccccEEECCCCccccC
Confidence 7666666777777777777777776555666666666665 4555443221111 11112222211 1122
Q ss_pred hhhHHHHHhhHhhhhhcCCccccccc
Q 043038 226 VVEYNEILNLVMVTIVSRNDLLKNVP 251 (271)
Q Consensus 226 ~~~~~~~~~~L~~L~L~~n~l~~~~~ 251 (271)
.+..+..+++|+.|++++|.+.+.+|
T Consensus 387 ~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 387 PDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CHhHhccCCcccEEEccCCCcccCCC
Confidence 23334678999999999999988776
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=1.8e-27 Score=209.92 Aligned_cols=238 Identities=19% Similarity=0.168 Sum_probs=150.5
Q ss_pred CccCCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccC
Q 043038 3 NLTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMS 79 (271)
Q Consensus 3 ~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 79 (271)
+|.++++|++|++++|.+.+..|.. +++|++|++++|.++...+.. |.++++|++|++++|.++...+..|..
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 126 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV----FTGLSNLTKLDISENKIVILLDYMFQD 126 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTS----STTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCccc----ccCCCCCCEEECCCCccccCChhHccc
Confidence 4667777777777777777665554 356777777777766422222 223666666666666666555555666
Q ss_pred CCCCCEEEccCCcccccCCcccccCCCccEEEccCCcccc------------------------ccCccccCCCCccEEe
Q 043038 80 DQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFG------------------------TIPATLKNCTALESLD 135 (271)
Q Consensus 80 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~------------------------~~~~~~~~l~~L~~L~ 135 (271)
+++|++|++++|.++...+..|..+++|+.|++++|.+.+ ..+..+..+++|+.|+
T Consensus 127 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 206 (477)
T 2id5_A 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206 (477)
T ss_dssp CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEE
T ss_pred cccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceee
Confidence 6666666666666654445555555555555555555553 2233344444455554
Q ss_pred cCCC-------------CcccEEEeccCccCCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----cccccc
Q 043038 136 VERF-------------SRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSR 198 (271)
Q Consensus 136 l~~~-------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~ 198 (271)
+... .+|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..++.|+. .|.+.+
T Consensus 207 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (477)
T 2id5_A 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV 286 (477)
T ss_dssp EECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSE
T ss_pred CCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccce
Confidence 4221 25666777777776444456677777777777777777555556666666655 344443
Q ss_pred ccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCC
Q 043038 199 SAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTF 270 (271)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 270 (271)
.. +..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+
T Consensus 287 ~~--------------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 287 VE--------------------------PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp EC--------------------------TTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred EC--------------------------HHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 21 12224678999999999999876677789999999999999976
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=2.5e-27 Score=208.96 Aligned_cols=255 Identities=19% Similarity=0.146 Sum_probs=199.8
Q ss_pred CcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCC
Q 043038 8 TQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLK 84 (271)
Q Consensus 8 ~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 84 (271)
+.++.|++++|.+.+..+.. +++|++|++++|.+++..|..+. ++++|++|++++|.++...+..|.++++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 107 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN----NLFNLRTLGLRSNRLKLIPLGVFTGLSNLT 107 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT----TCTTCCEEECCSSCCCSCCTTSSTTCTTCC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhh----CCccCCEEECCCCcCCccCcccccCCCCCC
Confidence 57999999999999876655 46999999999999875565554 499999999999999955556789999999
Q ss_pred EEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec-------------CCCCcccEEEeccCc
Q 043038 85 ILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV-------------ERFSRMVVLNLRSNK 151 (271)
Q Consensus 85 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l-------------~~~~~L~~L~l~~n~ 151 (271)
+|++++|+++...+..|..+++|+.|++++|.+.+..+..+..+++|+.|++ ..+++|+.|++++|.
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred EEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc
Confidence 9999999999777888999999999999999998777788999999999987 457789999999999
Q ss_pred cCCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceec---ccc
Q 043038 152 FHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVV---SRE 224 (271)
Q Consensus 152 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 224 (271)
+++..+..+..+++|+.|++++|...+.++.......+|+. .|.+...+...+ .....+..+++. ...
T Consensus 188 i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~ 262 (477)
T 2id5_A 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV-----RHLVYLRFLNLSYNPIST 262 (477)
T ss_dssp CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHH-----TTCTTCCEEECCSSCCCE
T ss_pred CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHh-----cCccccCeeECCCCcCCc
Confidence 98777778888999999999998776666665544445554 455554321111 111222222221 112
Q ss_pred chhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038 225 EVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271 (271)
Q Consensus 225 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 271 (271)
.....+..+++|+.|++++|.+.+..|..|..+++|+.|++++|+|+
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309 (477)
T ss_dssp ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence 22333467889999999999998888999999999999999999875
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=4.3e-26 Score=206.68 Aligned_cols=256 Identities=22% Similarity=0.242 Sum_probs=164.7
Q ss_pred ccCCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCc-cccC
Q 043038 4 LTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPD-CWMS 79 (271)
Q Consensus 4 ~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~ 79 (271)
|+++++|++|++++|.+.. +|.. +++|++|++++|.+++..|..+. .+++|++|++++|.+.+.++. .+..
T Consensus 274 ~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISAS----NFPSLTHLSIKGNTKRLELGTGCLEN 348 (606)
T ss_dssp TTTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGG----GCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred hccccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCchhhhh----ccCcCCEEECCCCCcccccchhhhhc
Confidence 6677778888888887763 4433 35778888888877654443333 377778888887777644433 4677
Q ss_pred CCCCCEEEccCCcccccC--CcccccCCCccEEEccCCccccccCccccCCCCccEEec--------------CCCCccc
Q 043038 80 DQNLKILKLSNNKFIGNL--PNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV--------------ERFSRMV 143 (271)
Q Consensus 80 l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l--------------~~~~~L~ 143 (271)
+++|++|++++|.+++.. +..+..+++|+.+++++|.+.+..|..+..+++|+.|++ ..+++|+
T Consensus 349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 428 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428 (606)
T ss_dssp CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCC
Confidence 777888888887776443 556777777888888888777666667777777777776 2346677
Q ss_pred EEEeccCccCCCCchhhhcCccccEEeccCCcccee---cCcccccccCCcc----ccccccccccccccccchhhhhhh
Q 043038 144 VLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGA---IPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILME 216 (271)
Q Consensus 144 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~ 216 (271)
.|++++|.+++..|..+..+++|+.|++++|.+++. .+..+..++.|+. .|.+.+.....+. ....+.
T Consensus 429 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~ 503 (606)
T 3t6q_A 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT-----SLKMMN 503 (606)
T ss_dssp EEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTT-----TCTTCC
T ss_pred EEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhc-----cccCCC
Confidence 778888777766677777777788888877777642 2244566666665 4555543221111 111122
Q ss_pred hceec---cccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCC
Q 043038 217 KASVV---SREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTF 270 (271)
Q Consensus 217 ~~~~~---~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 270 (271)
.+++. ..+..+..+..+++| .|++++|.+.+..|..+..+++|+.+++++|.+
T Consensus 504 ~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 504 HVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp EEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred EEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCc
Confidence 22211 222334444566666 777777777766666777777777777777764
No 10
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=4.8e-26 Score=195.84 Aligned_cols=249 Identities=16% Similarity=0.168 Sum_probs=166.0
Q ss_pred ccCCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCC
Q 043038 4 LTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSD 80 (271)
Q Consensus 4 ~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 80 (271)
++++++|++|++++|.+.+..+.. +++|++|++++|.+++..|..+. ++++|++|++++|.++...+..|..+
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~l~~~~~~~l 140 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ----NVPLLTVLVLERNDLSSLPRGIFHNT 140 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT----TCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhc----CCCCCCEEECCCCccCcCCHHHhcCC
Confidence 456777888888888777655543 45778888888887764444333 37778888888888773333446777
Q ss_pred CCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEE-------------------ec-----
Q 043038 81 QNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESL-------------------DV----- 136 (271)
Q Consensus 81 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L-------------------~l----- 136 (271)
++|++|++++|.++...+..+..+++|+.|++++|.+++. + +..+++|+.+ ++
T Consensus 141 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l 217 (390)
T 3o6n_A 141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI 217 (390)
T ss_dssp TTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCC
T ss_pred CCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c--cccccccceeecccccccccCCCCcceEEECCCCee
Confidence 8888888888887766666677778888888888877632 2 2333333333 33
Q ss_pred -----CCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccc
Q 043038 137 -----ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVP 207 (271)
Q Consensus 137 -----~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~ 207 (271)
...++|+.|++++|.+++. ..+..+++|+.|++++|.+++..|..+..++.|+. .|.+.+.+...
T Consensus 218 ~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---- 291 (390)
T 3o6n_A 218 NVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG---- 291 (390)
T ss_dssp CEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSS----
T ss_pred eeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCccc----
Confidence 1234677888888888743 56788899999999999998777888888888877 55555532111
Q ss_pred cchhhhhhhhceec--cccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCC
Q 043038 208 LDVDVILMEKASVV--SREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTF 270 (271)
Q Consensus 208 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 270 (271)
.....+..+++. ....++..+..+++|+.|++++|.+.+ ++ +..+++|+.|++++|.+
T Consensus 292 --~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 292 --QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp --SCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCE
T ss_pred --CCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccce-eC--chhhccCCEEEcCCCCc
Confidence 011111222211 223345555778888888888888865 33 67788888888888875
No 11
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=2.4e-26 Score=193.28 Aligned_cols=218 Identities=19% Similarity=0.168 Sum_probs=178.6
Q ss_pred CCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCC
Q 043038 7 FTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNL 83 (271)
Q Consensus 7 ~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 83 (271)
.++++.|++++|.+.. +|.. +++|++|++++|.++ .+|..+.. +++|++|++++|.++ .+|..+..+++|
T Consensus 80 ~~~l~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~----l~~L~~L~Ls~n~l~-~lp~~l~~l~~L 152 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ----FAGLETLTLARNPLR-ALPASIASLNRL 152 (328)
T ss_dssp STTCCEEEEESSCCSS-CCSCGGGGTTCSEEEEESSCCC-CCCSCGGG----GTTCSEEEEESCCCC-CCCGGGGGCTTC
T ss_pred ccceeEEEccCCCchh-cChhhhhCCCCCEEECCCCCcc-chhHHHhc----cCCCCEEECCCCccc-cCcHHHhcCcCC
Confidence 4789999999999984 4443 579999999999998 56755544 899999999999999 889899999999
Q ss_pred CEEEccCCcccccCCccccc---------CCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCC
Q 043038 84 KILKLSNNKFIGNLPNSFGS---------LAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHG 154 (271)
Q Consensus 84 ~~L~l~~n~~~~~~~~~~~~---------l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~ 154 (271)
++|++++|.+.+.+|..+.. +++|+.|++++|.+. .+|..+..+++| +.|++++|.++
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L-----------~~L~L~~N~l~- 219 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL-----------KSLKIRNSPLS- 219 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTC-----------CEEEEESSCCC-
T ss_pred CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCC-----------CEEEccCCCCC-
Confidence 99999998877677776654 899999999999998 788777766654 45668999998
Q ss_pred CCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceeccccchhhHH
Q 043038 155 PLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYN 230 (271)
Q Consensus 155 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (271)
.+|..+..+++|+.|++++|.+.+.+|..+..++.|+. .|.+.+. +| ..+
T Consensus 220 ~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~----~p----------------------~~~ 273 (328)
T 4fcg_A 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT----LP----------------------LDI 273 (328)
T ss_dssp CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB----CC----------------------TTG
T ss_pred cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh----cc----------------------hhh
Confidence 46677889999999999999888888888888888776 3333332 22 223
Q ss_pred HHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCC
Q 043038 231 EILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTF 270 (271)
Q Consensus 231 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 270 (271)
..+++|+.|++++|.+.+.+|.++..+++|+.+++..+.+
T Consensus 274 ~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 274 HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 4688999999999999999999999999999999987754
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=4.3e-26 Score=206.66 Aligned_cols=243 Identities=19% Similarity=0.154 Sum_probs=182.7
Q ss_pred CccCCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCC--Cccc
Q 043038 3 NLTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGEL--PDCW 77 (271)
Q Consensus 3 ~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~ 77 (271)
.++++++|++|++++|.+.+..|.. +++|++|++++|.+.+.++.. .+..+++|++|++++|.+++.. +..+
T Consensus 296 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 372 (606)
T 3t6q_A 296 GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG---CLENLENLRELDLSHDDIETSDCCNLQL 372 (606)
T ss_dssp SCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS---TTTTCTTCCEEECCSSCCCEEEESTTTT
T ss_pred hhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchh---hhhccCcCCEEECCCCccccccCcchhc
Confidence 4788899999999999998776654 579999999999887655533 2345889999999999988544 6778
Q ss_pred cCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCc-cccCCCCccEEec-------------CCCCccc
Q 043038 78 MSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPA-TLKNCTALESLDV-------------ERFSRMV 143 (271)
Q Consensus 78 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~-~~~~l~~L~~L~l-------------~~~~~L~ 143 (271)
..+++|++|++++|.+++..+..+..+++|+.+++++|.+.+..+. .+..+++|+.|++ ..+++|+
T Consensus 373 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 452 (606)
T 3t6q_A 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ 452 (606)
T ss_dssp TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCC
T ss_pred ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCC
Confidence 8899999999999998877788888889999999999988765554 3778888998887 4467899
Q ss_pred EEEeccCccCCC---CchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhh
Q 043038 144 VLNLRSNKFHGP---LPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILME 216 (271)
Q Consensus 144 ~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~ 216 (271)
.|++++|.+++. .+..+..+++|+.|++++|++++..|..+..++.|+. .|.+.+.....+..... . .+.
T Consensus 453 ~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~--L-~L~ 529 (606)
T 3t6q_A 453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG--I-YLN 529 (606)
T ss_dssp EEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCS--C-EEE
T ss_pred EEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcccc--c-EEE
Confidence 999999998752 2356888899999999999998777888888888877 66666643222221100 0 111
Q ss_pred hceeccccchhhHHHHHhhHhhhhhcCCccccccc
Q 043038 217 KASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVP 251 (271)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 251 (271)
..........+..+..+++|+.+++++|.+..+.+
T Consensus 530 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 530 LASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 11111233446667889999999999999876554
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=8.4e-27 Score=212.38 Aligned_cols=264 Identities=16% Similarity=0.196 Sum_probs=164.5
Q ss_pred Ccc--CCCcccEEECcCCCCCCCcccc---CCCccEEEccCCc-ccc-ccchhhhh--hccCCCcccEEEccCcccCCCC
Q 043038 3 NLT--KFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNS-FLG-SISHFLCD--KINETKRLEALKLNDNYLQGEL 73 (271)
Q Consensus 3 ~~~--~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~-~~~-~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~ 73 (271)
.++ ++++|++|++++|.+.+.+|.. +++|++|++++|. +++ .+|..+.. .+..+++|++|++++|.++ .+
T Consensus 242 ~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~i 320 (636)
T 4eco_A 242 DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TF 320 (636)
T ss_dssp CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SC
T ss_pred hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-cc
Confidence 355 8999999999999998888876 4689999999998 876 67766654 1222378888888888888 77
Q ss_pred Cc--cccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCC-ccEEecCC------------
Q 043038 74 PD--CWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTA-LESLDVER------------ 138 (271)
Q Consensus 74 ~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~-L~~L~l~~------------ 138 (271)
|. .+..+++|++|++++|.+++.+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|+++.
T Consensus 321 p~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~ 398 (636)
T 4eco_A 321 PVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDA 398 (636)
T ss_dssp CCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCT
T ss_pred CchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhh
Confidence 77 78888888888888888876677 6777777777777777777 66776777777 77776611
Q ss_pred --CCcccEEEeccCccCCCCchhhh-------cCccccEEeccCCccceecCcc-cccccCCcc----ccccccccccc-
Q 043038 139 --FSRMVVLNLRSNKFHGPLPTRFC-------DLAILQILDIADNNLSGAIPNY-INNVTGMVT----TNSFSRSAQQH- 203 (271)
Q Consensus 139 --~~~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~----~n~~~~~~~~~- 203 (271)
+++|+.|++++|.+++..|..+. .+++|+.|++++|+++ .+|.. +..++.|+. .|.+...+...
T Consensus 399 ~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 477 (636)
T 4eco_A 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSL 477 (636)
T ss_dssp TCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSS
T ss_pred cccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHh
Confidence 22566666666666655555554 4455566666666555 33332 222344433 33333221111
Q ss_pred -------------------------cccccc-hhhhhhhhceec--cccchhhHHHHHhhHhhhhh------cCCccccc
Q 043038 204 -------------------------LHVPLD-VDVILMEKASVV--SREEVVEYNEILNLVMVTIV------SRNDLLKN 249 (271)
Q Consensus 204 -------------------------~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~L~~L~L------~~n~l~~~ 249 (271)
+|..+. .....+..+++. ....++..+..+++|+.|++ ++|++.+.
T Consensus 478 ~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~ 557 (636)
T 4eco_A 478 KDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLRE 557 (636)
T ss_dssp EETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCC
T ss_pred ccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCccccc
Confidence 111111 011111111111 11224444455666777766 34555666
Q ss_pred ccHhhhccCCCCEEEccCCCC
Q 043038 250 VPLEVRNLKATQSLNFSHNTF 270 (271)
Q Consensus 250 ~~~~l~~l~~L~~L~l~~n~i 270 (271)
+|.++..+++|++|++++|+|
T Consensus 558 ~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 558 WPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CCTTGGGCSSCCEEECCSSCC
T ss_pred ChHHHhcCCCCCEEECCCCcC
Confidence 777777777777777777765
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.2e-25 Score=203.38 Aligned_cols=249 Identities=16% Similarity=0.166 Sum_probs=171.0
Q ss_pred ccCCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCC
Q 043038 4 LTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSD 80 (271)
Q Consensus 4 ~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 80 (271)
++++++|++|++++|.+.+..|.. +++|++|++++|.+++..|..+. ++++|++|++++|.++...+..|..+
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~l~~~~~~~l 146 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ----NVPLLTVLVLERNDLSSLPRGIFHNT 146 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT----TCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHc----CCCCCCEEEeeCCCCCCCCHHHhccC
Confidence 456778888888888887666544 45788888888888764444433 47888888888888874444556788
Q ss_pred CCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec------------------------
Q 043038 81 QNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV------------------------ 136 (271)
Q Consensus 81 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l------------------------ 136 (271)
++|++|++++|.+++..|..+..+++|+.|++++|.+.+. + +..+++|+.+++
T Consensus 147 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l 223 (597)
T 3oja_B 147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI 223 (597)
T ss_dssp TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCC
T ss_pred CCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCccccccCCchhheeeccCCcc
Confidence 8888888888888866677788888888888888887743 2 233344444333
Q ss_pred -----CCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccc
Q 043038 137 -----ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVP 207 (271)
Q Consensus 137 -----~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~ 207 (271)
...++|+.|++++|.+++ +..+..+++|+.|++++|.+.+..|..+..++.|+. .|.+.+.+..
T Consensus 224 ~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~----- 296 (597)
T 3oja_B 224 NVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY----- 296 (597)
T ss_dssp CEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECS-----
T ss_pred cccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcc-----
Confidence 122457788888888875 467888999999999999999888888888888877 5666553211
Q ss_pred cchhhhhhhhcee--ccccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCC
Q 043038 208 LDVDVILMEKASV--VSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTF 270 (271)
Q Consensus 208 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 270 (271)
.. ....+..+.+ .....++..++.+++|+.|++++|.+.+ ++ +..+++|+.|++++|.+
T Consensus 297 ~~-~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 297 GQ-PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp SS-CCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCE
T ss_pred cc-cCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCC-cC--hhhcCCCCEEEeeCCCC
Confidence 10 0111111211 1223455556778888888888888765 33 66778888888888875
No 15
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=1.4e-25 Score=188.67 Aligned_cols=174 Identities=14% Similarity=0.204 Sum_probs=102.6
Q ss_pred cccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEc
Q 043038 9 QLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKL 88 (271)
Q Consensus 9 ~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 88 (271)
+++.++++++.+...+....+++++|++++|.+++..+..+ .++++|++|++++|.++...|..|..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDF----KNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTT----TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhh----ccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 56677777776664333334577777777777765333233 33677777777777777555667777777777777
Q ss_pred cCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec---------------CCCCcccEEEeccCccC
Q 043038 89 SNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV---------------ERFSRMVVLNLRSNKFH 153 (271)
Q Consensus 89 ~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l---------------~~~~~L~~L~l~~n~l~ 153 (271)
++|.++ .+|..+. ++|+.+++++|.+.+..+..+..+++|+.|++ ..+++|++|++++|.++
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 777766 4444332 56666666666666444444555666666655 22345666666666665
Q ss_pred CCCchhhhcCccccEEeccCCccceecCcccccccCCcc
Q 043038 154 GPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT 192 (271)
Q Consensus 154 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 192 (271)
+ +|..+. ++|+.|++++|++++..+..+..++.|+.
T Consensus 185 ~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 220 (330)
T 1xku_A 185 T-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAK 220 (330)
T ss_dssp S-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCE
T ss_pred c-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence 2 333222 45666666666665444555555555544
No 16
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1e-25 Score=196.79 Aligned_cols=229 Identities=20% Similarity=0.197 Sum_probs=180.4
Q ss_pred ccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEcc
Q 043038 10 LLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLS 89 (271)
Q Consensus 10 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 89 (271)
.+.++.++..+...++...++++.|++++|.++...+.. |.++++|++|++++|.++...+.+|.++++|++|+++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNS----FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTT----TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHH----hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 456778877777544444568889999999887644443 3458889999999998886666788888999999999
Q ss_pred CCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec--------------CCCCcccEEEeccCccCCC
Q 043038 90 NNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV--------------ERFSRMVVLNLRSNKFHGP 155 (271)
Q Consensus 90 ~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l--------------~~~~~L~~L~l~~n~l~~~ 155 (271)
+|+++...+..|..+++|+.|++++|.+....+..+..+++|+.|++ ..+++|+.|++++|.++ .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 99888555567888889999999999888555557778888888887 34678999999999998 4
Q ss_pred CchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceeccccchhhHHH
Q 043038 156 LPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNE 231 (271)
Q Consensus 156 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (271)
+| .+..+++|+.|++++|.+++..|..+..++.|+. .|.+.+.... .+.
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------------------------~~~ 252 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN--------------------------AFD 252 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT--------------------------SST
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChh--------------------------hhc
Confidence 55 4778899999999999999777888888888877 4555543211 123
Q ss_pred HHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCC
Q 043038 232 ILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTF 270 (271)
Q Consensus 232 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 270 (271)
.+++|+.|+|++|.+.+..+..|..+++|+.|++++|.+
T Consensus 253 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 253 NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 678899999999999887777889999999999999975
No 17
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=9.1e-26 Score=197.76 Aligned_cols=229 Identities=19% Similarity=0.176 Sum_probs=182.2
Q ss_pred ccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEcc
Q 043038 10 LLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLS 89 (271)
Q Consensus 10 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 89 (271)
.+.++.++..+...+....+++++|++++|.+++..+..+. ++++|++|++++|.++...+..|.++++|++|+++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~----~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFR----HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTT----TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcC----CCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 45778888877754443456899999999998875554444 48899999999999986677888889999999999
Q ss_pred CCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecC--------------CCCcccEEEeccCccCCC
Q 043038 90 NNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVE--------------RFSRMVVLNLRSNKFHGP 155 (271)
Q Consensus 90 ~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~--------------~~~~L~~L~l~~n~l~~~ 155 (271)
+|+++...+..|..+++|+.|++++|.+....+..+..+++|+.|++. .+++|++|++++|.+++
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD- 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-
Confidence 999886666668888999999999999885555577788888888873 46789999999999984
Q ss_pred CchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceeccccchhhHHH
Q 043038 156 LPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNE 231 (271)
Q Consensus 156 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (271)
+| .+..+++|+.|++++|.+++..|..+..++.|+. .|.+.+... ..+.
T Consensus 211 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------------------------~~~~ 263 (452)
T 3zyi_A 211 MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER--------------------------NAFD 263 (452)
T ss_dssp CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT--------------------------TTTT
T ss_pred cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH--------------------------HHhc
Confidence 44 4778889999999999999777888888888877 455554311 1224
Q ss_pred HHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCC
Q 043038 232 ILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTF 270 (271)
Q Consensus 232 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 270 (271)
.+++|+.|+|++|.+.+..+..|..+++|+.|++++|.+
T Consensus 264 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 264 GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp TCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 678899999999999876777789999999999999975
No 18
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.4e-25 Score=184.97 Aligned_cols=219 Identities=20% Similarity=0.166 Sum_probs=166.0
Q ss_pred cEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccC
Q 043038 11 LFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSN 90 (271)
Q Consensus 11 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 90 (271)
+.++++++.+...+....+++++|++++|.++...+..+ ..+++|++|++++|.++...+..|..+++|++|++++
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASF----RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTT----TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHc----ccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 578888888876544445689999999999886443334 3488999999999999866688889999999999999
Q ss_pred Cc-ccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEE
Q 043038 91 NK-FIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQIL 169 (271)
Q Consensus 91 n~-~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 169 (271)
|. ++...+..+..+++|+.|++++|.+.+..+..+..+++|+ +|++++|.+++..+..+..+++|+.|
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-----------~L~l~~n~l~~~~~~~~~~l~~L~~L 158 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ-----------YLYLQDNALQALPDDTFRDLGNLTHL 158 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC-----------EEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCC-----------EEECCCCcccccCHhHhccCCCccEE
Confidence 97 7755577888899999999999998865566666555544 55578888876556667778888888
Q ss_pred eccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCc
Q 043038 170 DIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRND 245 (271)
Q Consensus 170 ~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 245 (271)
++++|++++..+..+..++.|+. .|.+.+.. +..+..+++|+.|++++|.
T Consensus 159 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------------------~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH--------------------------PHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--------------------------TTTTTTCTTCCEEECCSSC
T ss_pred ECCCCcccccCHHHhcCccccCEEECCCCcccccC--------------------------HhHccCcccccEeeCCCCc
Confidence 88888887555555666666665 44444321 1122357788999999999
Q ss_pred ccccccHhhhccCCCCEEEccCCCC
Q 043038 246 LLKNVPLEVRNLKATQSLNFSHNTF 270 (271)
Q Consensus 246 l~~~~~~~l~~l~~L~~L~l~~n~i 270 (271)
+.+..+..+..+++|+.|++++|.+
T Consensus 213 l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 213 LSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred CCcCCHHHcccCcccCEEeccCCCc
Confidence 9886677899999999999999976
No 19
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=3e-26 Score=194.58 Aligned_cols=256 Identities=17% Similarity=0.147 Sum_probs=133.5
Q ss_pred cccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEc
Q 043038 9 QLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKL 88 (271)
Q Consensus 9 ~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 88 (271)
...+.+++++.+...+....+++++|++++|.+++..+..+ .++++|++|++++|.++...+..|..+++|++|++
T Consensus 32 ~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 32 RNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDL----QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp TTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTT----TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHh----ccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 33445555555553333233455556666555554222122 23555555666555555444445555555566666
Q ss_pred cCCcccccCCcccccCCCccEEEccCCccccccCc--cccCCCCccEEec--------------CCCCcccEEEeccCcc
Q 043038 89 SNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPA--TLKNCTALESLDV--------------ERFSRMVVLNLRSNKF 152 (271)
Q Consensus 89 ~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~--~~~~l~~L~~L~l--------------~~~~~L~~L~l~~n~l 152 (271)
++|+++...+..+..+++|+.|++++|.+. .+|. .+..+++|+.|++ ..+++|+.|++++|.+
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 555555322233555555556666555555 2332 3445555555544 2234556666666666
Q ss_pred CCCCchhhhcCccccEEeccCCccceecCcc-cccccCCcc----ccccccccccccccccchh---hhhhhhceec--c
Q 043038 153 HGPLPTRFCDLAILQILDIADNNLSGAIPNY-INNVTGMVT----TNSFSRSAQQHLHVPLDVD---VILMEKASVV--S 222 (271)
Q Consensus 153 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~----~n~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~ 222 (271)
++..|..+..+++|+.|++++|.+. .+|.. +..++.|+. .|.+.+.....++...... ...+....+. .
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred CccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence 6555566666666666666666654 33322 222334433 3444432211111000000 0000000000 1
Q ss_pred ccchhhHHHHHhhHhhhhhcCCcccccccHh-hhccCCCCEEEccCCCCC
Q 043038 223 REEVVEYNEILNLVMVTIVSRNDLLKNVPLE-VRNLKATQSLNFSHNTFT 271 (271)
Q Consensus 223 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~i~ 271 (271)
...++.++..+++|+.|++++|.+.. +|.. |..+++|+.|++++|.++
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCcc
Confidence 12345566788999999999999974 6666 589999999999999874
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=1.7e-25 Score=202.73 Aligned_cols=112 Identities=21% Similarity=0.186 Sum_probs=62.1
Q ss_pred CccCCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccC
Q 043038 3 NLTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMS 79 (271)
Q Consensus 3 ~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 79 (271)
+|+++++|++|++++|.+.+..|.. +++|++|++++|.+++..|..+. ++++|++|++++|.++...+..|..
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~ 126 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS----GLTSLENLVAVETKLASLESFPIGQ 126 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSST----TCTTCCEEECTTSCCCCSSSSCCTT
T ss_pred hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcC----CcccCCEEEccCCccccccccccCC
Confidence 4566667777777777666555544 34666777777666654343333 2555666666655555333344555
Q ss_pred CCCCCEEEccCCcccc-cCCcccccCCCccEEEccCCccc
Q 043038 80 DQNLKILKLSNNKFIG-NLPNSFGSLAFLVWLDLGKNRLF 118 (271)
Q Consensus 80 l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~l~l~~n~l~ 118 (271)
+++|++|++++|.+++ .+|..+..+++|+.|++++|.+.
T Consensus 127 l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred CCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 5555555555555542 23445555555555555555443
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=2.2e-26 Score=209.65 Aligned_cols=251 Identities=19% Similarity=0.249 Sum_probs=151.4
Q ss_pred CccCCCcccEEECcCCC-CCC-Ccccc---C------CCccEEEccCCccccccch--hhhhhccCCCcccEEEccCccc
Q 043038 3 NLTKFTQLLFRSLDSNN-MSG-LLPLI---S------SNLVYLGLSDNSFLGSISH--FLCDKINETKRLEALKLNDNYL 69 (271)
Q Consensus 3 ~~~~~~~L~~L~l~~n~-~~~-~~~~~---~------~~L~~L~l~~n~~~~~~~~--~~~~~~~~~~~L~~L~l~~n~l 69 (271)
.|+++++|++|++++|. +.+ .+|.. + ++|++|++++|.++ .+|. .+. ++++|++|++++|.+
T Consensus 268 ~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~----~l~~L~~L~L~~N~l 342 (636)
T 4eco_A 268 FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ----KMKKLGMLECLYNQL 342 (636)
T ss_dssp TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT----TCTTCCEEECCSCCC
T ss_pred HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc----cCCCCCEEeCcCCcC
Confidence 46778888888888887 776 55544 2 67778888888777 4554 333 367777777777777
Q ss_pred CCCCCccccCCCCCCEEEccCCcccccCCcccccCCC-ccEEEccCCccccccCccccCCC--CccEEecC---------
Q 043038 70 QGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAF-LVWLDLGKNRLFGTIPATLKNCT--ALESLDVE--------- 137 (271)
Q Consensus 70 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~l~l~~n~l~~~~~~~~~~l~--~L~~L~l~--------- 137 (271)
++.+| .|..+++|++|++++|+++ .+|..+..+++ |+.|++++|.+. .+|..+..++ +|+.|+++
T Consensus 343 ~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 343 EGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp EEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred ccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcch
Confidence 66666 6666666666666666666 55555666666 666666666665 4555444332 45555540
Q ss_pred -----------CCCcccEEEeccCccCCCCchhhhcCc-------------------------------cccEEeccCCc
Q 043038 138 -----------RFSRMVVLNLRSNKFHGPLPTRFCDLA-------------------------------ILQILDIADNN 175 (271)
Q Consensus 138 -----------~~~~L~~L~l~~n~l~~~~~~~~~~l~-------------------------------~L~~L~l~~n~ 175 (271)
.+++|+.|++++|.+++..+..+..++ +|+.|++++|+
T Consensus 420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 499 (636)
T 4eco_A 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499 (636)
T ss_dssp CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSC
T ss_pred hhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCc
Confidence 222455555555555422222233344 45555555555
Q ss_pred cceecCcccc--cccCCcc----ccccccccccccccccchhhhhhhhcee---------ccccchhhHHHHHhhHhhhh
Q 043038 176 LSGAIPNYIN--NVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASV---------VSREEVVEYNEILNLVMVTI 240 (271)
Q Consensus 176 l~~~~~~~~~--~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~L~~L~ 240 (271)
++ .+|..+. .++.|+. .|.+.+ +|..+. ....+..+.+ ...+.++..+..+++|+.|+
T Consensus 500 l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~-~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~ 572 (636)
T 4eco_A 500 LT-KLSDDFRATTLPYLVGIDLSYNSFSK-----FPTQPL-NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572 (636)
T ss_dssp CC-BCCGGGSTTTCTTCCEEECCSSCCSS-----CCCGGG-GCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred CC-ccChhhhhccCCCcCEEECCCCCCCC-----cChhhh-cCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEE
Confidence 54 4444443 4444444 444443 222111 1222333332 12345566677899999999
Q ss_pred hcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038 241 VSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271 (271)
Q Consensus 241 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 271 (271)
+++|.+ +.+|..+. ++|+.|++++|.++
T Consensus 573 Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 573 IGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred CCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 999999 56888766 89999999999874
No 22
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=6.8e-26 Score=188.64 Aligned_cols=221 Identities=23% Similarity=0.274 Sum_probs=136.0
Q ss_pred cccEEECcCCCCCCCcccc---CCCccEEEccCCccccc--cchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCC
Q 043038 9 QLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGS--ISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNL 83 (271)
Q Consensus 9 ~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~--~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 83 (271)
++++|++++|.+....+.. +++|++|++++|.++.. .+..+. .+++|++|++++|.++ .+|..+..+++|
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L 103 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF----GTTSLKYLDLSFNGVI-TMSSNFLGLEQL 103 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH----SCSCCCEEECCSCSEE-EEEEEEETCTTC
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccc----cccccCEEECCCCccc-cChhhcCCCCCC
Confidence 4555555555555333222 34555555555555421 122222 2455555555555555 344445555555
Q ss_pred CEEEccCCcccccCC-cccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCC-CCchhhh
Q 043038 84 KILKLSNNKFIGNLP-NSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHG-PLPTRFC 161 (271)
Q Consensus 84 ~~L~l~~n~~~~~~~-~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~-~~~~~~~ 161 (271)
++|++++|.++...+ ..+..+++|+.|++++|.+.+..+..+.. +++|+.|++++|.+++ ..|..+.
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------l~~L~~L~l~~n~l~~~~~~~~~~ 172 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-----------LSSLEVLKMAGNSFQENFLPDIFT 172 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT-----------CTTCCEEECTTCEEGGGEECSCCT
T ss_pred CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc-----------CcCCCEEECCCCccccccchhHHh
Confidence 555555555553222 34455555555555555555433433333 3456677788888875 4677788
Q ss_pred cCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHh
Q 043038 162 DLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVM 237 (271)
Q Consensus 162 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 237 (271)
.+++|+.|++++|.+++..|..+..++.|+. .|.+.+.... .+..+++|+
T Consensus 173 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------------------------~~~~l~~L~ 226 (306)
T 2z66_A 173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF--------------------------PYKCLNSLQ 226 (306)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG--------------------------GGTTCTTCC
T ss_pred hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh--------------------------hccCcccCC
Confidence 8888888888888888666777777777766 4555443111 113578899
Q ss_pred hhhhcCCcccccccHhhhccC-CCCEEEccCCCCC
Q 043038 238 VTIVSRNDLLKNVPLEVRNLK-ATQSLNFSHNTFT 271 (271)
Q Consensus 238 ~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~i~ 271 (271)
.|++++|.+.+..|..+..++ +|+.|++++|.++
T Consensus 227 ~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 227 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp EEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred EeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 999999999988888998885 9999999999863
No 23
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=2.2e-25 Score=187.74 Aligned_cols=225 Identities=17% Similarity=0.207 Sum_probs=144.3
Q ss_pred cccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEc
Q 043038 9 QLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKL 88 (271)
Q Consensus 9 ~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 88 (271)
+++.++++++.+...+....+++++|++++|.++...+..+ .++++|++|++++|.++...|.+|..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDF----KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTT----TTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHh----hCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 57888888888775443345688888888888876444343 34888888888888888666778888888888888
Q ss_pred cCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCC--------------CcccEEEeccCccCC
Q 043038 89 SNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERF--------------SRMVVLNLRSNKFHG 154 (271)
Q Consensus 89 ~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~--------------~~L~~L~l~~n~l~~ 154 (271)
++|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++... .+|+.|++++|.+++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG 186 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc
Confidence 888887 5555443 67888888888887444445677777777776111 056667777777663
Q ss_pred CCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceeccccchhhHH
Q 043038 155 PLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYN 230 (271)
Q Consensus 155 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (271)
+|..+. ++|+.|++++|.+++..+..+..++.|+. .|.+.+.... .+
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~--------------------------~~ 237 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG--------------------------SL 237 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTT--------------------------GG
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChh--------------------------Hh
Confidence 443332 56677777777776555556666665555 3444432111 11
Q ss_pred HHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCC
Q 043038 231 EILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTF 270 (271)
Q Consensus 231 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 270 (271)
..+++|+.|++++|.+. .+|.++..+++|+.|++++|+|
T Consensus 238 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 238 SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276 (332)
T ss_dssp GGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCC
T ss_pred hCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCC
Confidence 23455555555555554 3555555555555555555554
No 24
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=6.6e-25 Score=184.61 Aligned_cols=249 Identities=17% Similarity=0.152 Sum_probs=154.5
Q ss_pred CcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCC
Q 043038 8 TQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLK 84 (271)
Q Consensus 8 ~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 84 (271)
+.++.|++++|.+.+..+.. +++|++|++++|.+++..|..+. .+++|++|++++|.++ .+|..+. ++|+
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~ 124 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA----PLVKLERLYLSKNQLK-ELPEKMP--KTLQ 124 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTT----TCTTCCEEECCSSCCS-BCCSSCC--TTCC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhc----CCCCCCEEECCCCcCC-ccChhhc--cccc
Confidence 56788888888888766544 46788888888888764454444 4788888888888887 5555443 6788
Q ss_pred EEEccCCcccccCCcccccCCCccEEEccCCcccc--ccCccccCCCCccEEecCC----------CCcccEEEeccCcc
Q 043038 85 ILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFG--TIPATLKNCTALESLDVER----------FSRMVVLNLRSNKF 152 (271)
Q Consensus 85 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~--~~~~~~~~l~~L~~L~l~~----------~~~L~~L~l~~n~l 152 (271)
+|++++|.++...+..+..+++|+.+++++|.+.. ..+..+..+++|+.|++.. .++|+.|++++|.+
T Consensus 125 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l 204 (330)
T 1xku_A 125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKI 204 (330)
T ss_dssp EEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCC
T ss_pred EEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcC
Confidence 88888888875555667778888888888887752 4455667777777777622 25677888888877
Q ss_pred CCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceec--cccch
Q 043038 153 HGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVV--SREEV 226 (271)
Q Consensus 153 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 226 (271)
++..+..+..+++|+.|++++|.+++..+..+..++.|+. .|.+... |..+. ....+..+.+. ....+
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-----p~~l~-~l~~L~~L~l~~N~i~~~ 278 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-----PGGLA-DHKYIQVVYLHNNNISAI 278 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-----CTTTT-TCSSCCEEECCSSCCCCC
T ss_pred CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC-----Chhhc-cCCCcCEEECCCCcCCcc
Confidence 7666677777777888888888777655556666666665 4444432 11110 00001111110 00000
Q ss_pred -hhHH------HHHhhHhhhhhcCCcccc--cccHhhhccCCCCEEEccCCC
Q 043038 227 -VEYN------EILNLVMVTIVSRNDLLK--NVPLEVRNLKATQSLNFSHNT 269 (271)
Q Consensus 227 -~~~~------~~~~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~ 269 (271)
...+ ...+.++.+++++|.+.. ..|..|..++.++.+++++|+
T Consensus 279 ~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 279 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 0000 123456667777776642 345666777777777777764
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=4.1e-25 Score=200.67 Aligned_cols=113 Identities=21% Similarity=0.162 Sum_probs=78.1
Q ss_pred CccCCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccC
Q 043038 3 NLTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMS 79 (271)
Q Consensus 3 ~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 79 (271)
+|+++++|++|++++|.+.+..|.+ +++|++|++++|.++...+.. |.++++|++|++++|.++...+..|++
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~----f~~L~~L~~L~Ls~N~l~~l~~~~~~~ 146 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA----FSGLSSLQKLVAVETNLASLENFPIGH 146 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG----GTTCTTCCEEECTTSCCCCSTTCCCTT
T ss_pred HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH----hcCCCCCCEEECCCCcCCCCChhhhhc
Confidence 4677777777777777777655544 357777777777776533322 334777888888888777555556777
Q ss_pred CCCCCEEEccCCccccc-CCcccccCCCccEEEccCCcccc
Q 043038 80 DQNLKILKLSNNKFIGN-LPNSFGSLAFLVWLDLGKNRLFG 119 (271)
Q Consensus 80 l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~l~l~~n~l~~ 119 (271)
+++|++|++++|.++.. .|..+..+++|+.|++++|.+++
T Consensus 147 L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 147 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 78888888888877632 45666777788888887777654
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=3.3e-25 Score=197.42 Aligned_cols=43 Identities=21% Similarity=0.143 Sum_probs=26.2
Q ss_pred hHHHHHhhHhhhhhcCCcccccccHh-hhccCCCCEEEccCCCC
Q 043038 228 EYNEILNLVMVTIVSRNDLLKNVPLE-VRNLKATQSLNFSHNTF 270 (271)
Q Consensus 228 ~~~~~~~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~i 270 (271)
..++.+++|+.|++++|.+.+.+|.. +..+++|++|++++|++
T Consensus 368 ~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l 411 (520)
T 2z7x_B 368 EMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411 (520)
T ss_dssp HHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCC
T ss_pred HHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCC
Confidence 33455666777777777766545543 55666666666666655
No 27
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=3.5e-25 Score=203.22 Aligned_cols=254 Identities=21% Similarity=0.147 Sum_probs=144.3
Q ss_pred CcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCC
Q 043038 8 TQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLK 84 (271)
Q Consensus 8 ~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 84 (271)
+++++|++++|.+.+..+.. +++|++|++++|.+++..|..+.. ++.|++|++++|.++...+.+|.++++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK----LPMLKVLNLQHNELSQLSDKTFAFCTNLT 100 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHH----CTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhc----ccCcCEEECCCCccCccChhhhccCCCCC
Confidence 45666666666666555443 346666666666666544544443 66666666666666633333566666666
Q ss_pred EEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecC---------------CCCcccEEEecc
Q 043038 85 ILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVE---------------RFSRMVVLNLRS 149 (271)
Q Consensus 85 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~---------------~~~~L~~L~l~~ 149 (271)
+|++++|.+++..+..|..+++|+.|++++|.+.+..|..+..+++|+.|++. .+++|+.|++++
T Consensus 101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred EEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence 66666666664444556666666666666666655555555566666666551 124555556655
Q ss_pred CccCCCCc---------------------------------------------------hhhhcCcc--ccEEeccCCcc
Q 043038 150 NKFHGPLP---------------------------------------------------TRFCDLAI--LQILDIADNNL 176 (271)
Q Consensus 150 n~l~~~~~---------------------------------------------------~~~~~l~~--L~~L~l~~n~l 176 (271)
|.+++..| ..+..++. |+.|++++|.+
T Consensus 181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l 260 (680)
T 1ziw_A 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260 (680)
T ss_dssp CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence 55544333 33333332 66666666666
Q ss_pred ceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceecc--cc------chh----hHHHHHhhHhhhh
Q 043038 177 SGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVS--RE------EVV----EYNEILNLVMVTI 240 (271)
Q Consensus 177 ~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~----~~~~~~~~L~~L~ 240 (271)
++..+..+..++.|+. .|.+.+.....+. ....+..+.+.. .. .++ ..++.+++|+.|+
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~ 335 (680)
T 1ziw_A 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH-----GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBSEECTTTTT-----TCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEE
T ss_pred CccCcccccCcccccEeeCCCCccCccChhhhc-----CCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEE
Confidence 6555555555555555 3444332111111 111111111110 00 111 1335678899999
Q ss_pred hcCCcccccccHhhhccCCCCEEEccCCCC
Q 043038 241 VSRNDLLKNVPLEVRNLKATQSLNFSHNTF 270 (271)
Q Consensus 241 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 270 (271)
+++|.+.+..+..|..+++|++|++++|.+
T Consensus 336 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~ 365 (680)
T 1ziw_A 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365 (680)
T ss_dssp CCSCCBCCCCTTTTTTCTTCCEEECTTCBS
T ss_pred CCCCccCCCChhHhccccCCcEEECCCCch
Confidence 999998887788888899999988888753
No 28
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.9e-25 Score=198.90 Aligned_cols=85 Identities=25% Similarity=0.294 Sum_probs=63.9
Q ss_pred CccCCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCC-CCCcccc
Q 043038 3 NLTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQG-ELPDCWM 78 (271)
Q Consensus 3 ~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~ 78 (271)
+|+++++|++|++++|.+.+..|.. +++|++|++++|.++. +|.. .+++|++|++++|.+++ ..|..|+
T Consensus 40 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~------~l~~L~~L~L~~N~l~~~~~p~~~~ 112 (520)
T 2z7x_B 40 DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH------PTVNLKHLDLSFNAFDALPICKEFG 112 (520)
T ss_dssp HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC------CCCCCSEEECCSSCCSSCCCCGGGG
T ss_pred hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc------ccCCccEEeccCCccccccchhhhc
Confidence 3677888888888888888776655 4688888888888874 5543 37788888888888875 3567788
Q ss_pred CCCCCCEEEccCCccc
Q 043038 79 SDQNLKILKLSNNKFI 94 (271)
Q Consensus 79 ~l~~L~~L~l~~n~~~ 94 (271)
.+++|++|++++|.++
T Consensus 113 ~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 113 NMSQLKFLGLSTTHLE 128 (520)
T ss_dssp GCTTCCEEEEEESSCC
T ss_pred cCCcceEEEecCcccc
Confidence 8888888888777764
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=2.2e-24 Score=182.47 Aligned_cols=246 Identities=21% Similarity=0.317 Sum_probs=120.5
Q ss_pred CCccCCCcccEEECcCCCCCCCccc-cCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCC
Q 043038 2 PNLTKFTQLLFRSLDSNNMSGLLPL-ISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSD 80 (271)
Q Consensus 2 ~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 80 (271)
|+++.+++|++|++++|.+.+..+- .+++|++|++++|.++. ++ .+..+++|++|++++|.++ ..+. +..+
T Consensus 60 ~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~-~~-----~~~~l~~L~~L~l~~n~i~-~~~~-~~~l 131 (347)
T 4fmz_A 60 QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD-IS-----ALQNLTNLRELYLNEDNIS-DISP-LANL 131 (347)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CG-----GGTTCTTCSEEECTTSCCC-CCGG-GTTC
T ss_pred hhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC-ch-----HHcCCCcCCEEECcCCccc-Cchh-hccC
Confidence 4566677777777777766654331 14567777777776654 22 2334666777777766665 2332 5555
Q ss_pred CCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec------------------------
Q 043038 81 QNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV------------------------ 136 (271)
Q Consensus 81 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l------------------------ 136 (271)
++|++|++++|...... ..+..+++|+.+++++|.+.+ .+. +..+++|+.|++
T Consensus 132 ~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~ 208 (347)
T 4fmz_A 132 TKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYV 208 (347)
T ss_dssp TTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCS
T ss_pred CceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCC-chh-hccCCCCCEEEccCCcccccccccCCCccceeeccc
Confidence 66666666665433122 224444555555555544442 111 334444444444
Q ss_pred ---------CCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccc
Q 043038 137 ---------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQH 203 (271)
Q Consensus 137 ---------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~ 203 (271)
..+++|+.|++++|.+++. +. +..+++|+.|++++|.+++ + ..+..++.|+. .|.+.+.
T Consensus 209 n~l~~~~~~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~---- 280 (347)
T 4fmz_A 209 NQITDITPVANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI---- 280 (347)
T ss_dssp SCCCCCGGGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC----
T ss_pred CCCCCCchhhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC----
Confidence 2233455555555555422 22 4445555555555555542 2 23344444443 3333332
Q ss_pred cccccchhhhhhhhceec---cccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038 204 LHVPLDVDVILMEKASVV---SREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271 (271)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 271 (271)
+. ......+..+.+. .....+..++.+++|+.|++++|.+.+..| +..+++|+.|++++|.|+
T Consensus 281 -~~--~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 281 -SV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp -GG--GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred -hh--hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 00 0011111111111 122334445566677777777777665434 666777777777777664
No 30
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=2.6e-25 Score=208.64 Aligned_cols=260 Identities=17% Similarity=0.146 Sum_probs=172.2
Q ss_pred CccCCCcccEEECcCCCCCCCc-ccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCcc--
Q 043038 3 NLTKFTQLLFRSLDSNNMSGLL-PLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDC-- 76 (271)
Q Consensus 3 ~~~~~~~L~~L~l~~n~~~~~~-~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-- 76 (271)
+|+++++|++|++++|...+.+ |.. +++|++|++++|.+.+..|..+ .++++|++|++++|.+++..+..
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~----~~l~~L~~L~Ls~n~l~~~~~~~~~ 118 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF----QGLFHLFELRLYFCGLSDAVLKDGY 118 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS----CSCSSCCCEECTTCCCSSCCSTTCC
T ss_pred HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc----cCCcccCEeeCcCCCCCcccccCcc
Confidence 5788899999999998666555 443 4688999999998876545444 45888999999999888655554
Q ss_pred ccCCCCCCEEEccCCcccccCC-cccccCCCccEEEccCCccccccCccccCC--CCccEEecC-------------CCC
Q 043038 77 WMSDQNLKILKLSNNKFIGNLP-NSFGSLAFLVWLDLGKNRLFGTIPATLKNC--TALESLDVE-------------RFS 140 (271)
Q Consensus 77 ~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l--~~L~~L~l~-------------~~~ 140 (271)
|..+++|++|++++|.+++..+ ..|..+++|+.|++++|.+.+..+..+..+ ++|+.|++. .++
T Consensus 119 ~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~ 198 (844)
T 3j0a_A 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198 (844)
T ss_dssp CSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSS
T ss_pred ccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcC
Confidence 8888899999999998875544 568888999999999988876666666655 566666551 112
Q ss_pred c------ccEEEeccCccCCCCchhhhc--------------------------------------CccccEEeccCCcc
Q 043038 141 R------MVVLNLRSNKFHGPLPTRFCD--------------------------------------LAILQILDIADNNL 176 (271)
Q Consensus 141 ~------L~~L~l~~n~l~~~~~~~~~~--------------------------------------l~~L~~L~l~~n~l 176 (271)
+ |+.|++++|.+++..+..+.. .++|+.|++++|.+
T Consensus 199 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l 278 (844)
T 3j0a_A 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV 278 (844)
T ss_dssp CTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCC
T ss_pred CccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcc
Confidence 2 677777777665444333221 14577777777777
Q ss_pred ceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceec---cccchhhHHHHHhhHhhhhhcCCccccc
Q 043038 177 SGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVV---SREEVVEYNEILNLVMVTIVSRNDLLKN 249 (271)
Q Consensus 177 ~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 249 (271)
.+..+..+..++.|+. .|.+.+.....+. ....++.+.+. .....+..+..+++|+.|++++|.+.+.
T Consensus 279 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 353 (844)
T 3j0a_A 279 FSLNSRVFETLKDLKVLNLAYNKINKIADEAFY-----GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII 353 (844)
T ss_dssp CEECSCCSSSCCCCCEEEEESCCCCEECTTTTT-----TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCC
T ss_pred cccChhhhhcCCCCCEEECCCCcCCCCChHHhc-----CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCcc
Confidence 6666666666666665 4555443221111 11111111111 1112233345677888888888888766
Q ss_pred ccHhhhccCCCCEEEccCCCCC
Q 043038 250 VPLEVRNLKATQSLNFSHNTFT 271 (271)
Q Consensus 250 ~~~~l~~l~~L~~L~l~~n~i~ 271 (271)
.+..|..+++|+.|++++|.++
T Consensus 354 ~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 354 QDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp CSSCSCSCCCCCEEEEETCCSC
T ss_pred ChhhhcCCCCCCEEECCCCCCC
Confidence 6667888888888888888764
No 31
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=5.4e-25 Score=205.14 Aligned_cols=254 Identities=17% Similarity=0.189 Sum_probs=156.6
Q ss_pred CCCcccEEECcCCCCCCCcccc---CCCccEEEccCCc-ccc-ccchhhhh---hccCCCcccEEEccCcccCCCCCc--
Q 043038 6 KFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNS-FLG-SISHFLCD---KINETKRLEALKLNDNYLQGELPD-- 75 (271)
Q Consensus 6 ~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~-~~~-~~~~~~~~---~~~~~~~L~~L~l~~n~l~~~~~~-- 75 (271)
++++|++|++++|.+.+.+|.. +++|+.|++++|. +++ .+|..+.. .+..+++|+.|++++|.++ .+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence 8888999999999888888865 4688889998887 776 56665543 2234557788888888777 6776
Q ss_pred cccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCC-ccEEecCC----------------
Q 043038 76 CWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTA-LESLDVER---------------- 138 (271)
Q Consensus 76 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~-L~~L~l~~---------------- 138 (271)
.|..+++|+.|++++|.++ .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++..
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~ 644 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY 644 (876)
T ss_dssp HHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSS
T ss_pred hhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccC
Confidence 7777777777777777777 556 6666777777777777766 56666666666 66666511
Q ss_pred ---------------------------CCcccEEEeccCccCCCCchh-hhcCccccEEeccCCccceecCcccccc---
Q 043038 139 ---------------------------FSRMVVLNLRSNKFHGPLPTR-FCDLAILQILDIADNNLSGAIPNYINNV--- 187 (271)
Q Consensus 139 ---------------------------~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~--- 187 (271)
.++|+.|++++|.++ .+|.. +..+++|+.|++++|+++ .+|..+...
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~ 722 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDG 722 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTS
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccc
Confidence 114455555555554 23333 335566666666666665 444433221
Q ss_pred -----cCCcc----ccccccccccccccccc-hhhhhhhhceec--cccchhhHHHHHhhHhhhhhcC------Cccccc
Q 043038 188 -----TGMVT----TNSFSRSAQQHLHVPLD-VDVILMEKASVV--SREEVVEYNEILNLVMVTIVSR------NDLLKN 249 (271)
Q Consensus 188 -----~~L~~----~n~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~L~~L~L~~------n~l~~~ 249 (271)
+.|+. .|.+.. +|..+. .....+..+.+. ....++..+..+++|+.|++++ |.+.+.
T Consensus 723 ~l~nl~~L~~L~Ls~N~L~~-----lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ 797 (876)
T 4ecn_A 723 NYKNTYLLTTIDLRFNKLTS-----LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQ 797 (876)
T ss_dssp CCTTGGGCCEEECCSSCCCC-----CCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCC
T ss_pred cccccCCccEEECCCCCCcc-----chHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCccccccccc
Confidence 13333 344443 222211 111122222221 1222444445677778887765 666667
Q ss_pred ccHhhhccCCCCEEEccCCCC
Q 043038 250 VPLEVRNLKATQSLNFSHNTF 270 (271)
Q Consensus 250 ~~~~l~~l~~L~~L~l~~n~i 270 (271)
+|..|..+++|+.|++++|+|
T Consensus 798 ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 798 WPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp CCTTGGGCSSCCEEECCSSCC
T ss_pred ChHHHhcCCCCCEEECCCCCC
Confidence 787888888888888888776
No 32
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=4.2e-25 Score=197.86 Aligned_cols=148 Identities=22% Similarity=0.224 Sum_probs=98.8
Q ss_pred CccCCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCC-CCCcccc
Q 043038 3 NLTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQG-ELPDCWM 78 (271)
Q Consensus 3 ~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~ 78 (271)
+|+++++|++|++++|.+.+..|.. +++|++|++++|.+++..+..+. ++++|++|++++|.++. ..|..|.
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~Ls~n~l~~~~~~~~~~ 120 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG----PLSSLKYLNLMGNPYQTLGVTSLFP 120 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT----TCTTCCEEECTTCCCSSSCSSCSCT
T ss_pred hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhc----cCCCCcEEECCCCcccccchhhhhh
Confidence 3666777777777777776655544 34677777777777654333333 37777777777777764 2455667
Q ss_pred CCCCCCEEEccCCc-ccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec-------------CCCCcccE
Q 043038 79 SDQNLKILKLSNNK-FIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV-------------ERFSRMVV 144 (271)
Q Consensus 79 ~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l-------------~~~~~L~~ 144 (271)
.+++|++|++++|. ++...+..+..+++|+.|++++|.+.+..|..+..+++|+.|++ +.+++|++
T Consensus 121 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 200 (549)
T 2z81_A 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRY 200 (549)
T ss_dssp TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSE
T ss_pred ccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccE
Confidence 77777777777776 33223346777777777777777777666777777777777765 23677888
Q ss_pred EEeccCccCC
Q 043038 145 LNLRSNKFHG 154 (271)
Q Consensus 145 L~l~~n~l~~ 154 (271)
|++++|.+++
T Consensus 201 L~L~~n~l~~ 210 (549)
T 2z81_A 201 LELRDTNLAR 210 (549)
T ss_dssp EEEESCBCTT
T ss_pred EEccCCcccc
Confidence 8888887765
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=4.2e-24 Score=180.75 Aligned_cols=225 Identities=17% Similarity=0.271 Sum_probs=135.9
Q ss_pred ccCCCcccEEECcCCCCCCCcccc--CCCccEEEccCCccccccchhhhh-------------------hccCCCcccEE
Q 043038 4 LTKFTQLLFRSLDSNNMSGLLPLI--SSNLVYLGLSDNSFLGSISHFLCD-------------------KINETKRLEAL 62 (271)
Q Consensus 4 ~~~~~~L~~L~l~~n~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~-------------------~~~~~~~L~~L 62 (271)
++++++|++|++++|.+... +.. +++|++|++++|.++. ++. +.. .+..+++|++|
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~-~~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L 160 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDI-SALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL 160 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC-GGGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEE
T ss_pred hhcCCcCCEEEccCCcccCc-hHHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCcccccchhhCCCCcEE
Confidence 55566666666666666542 221 3466666666666554 221 111 12235555555
Q ss_pred EccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec------
Q 043038 63 KLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV------ 136 (271)
Q Consensus 63 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l------ 136 (271)
++++|.++. .+. +..+++|++|++++|.++. .+. +..+++|+.+++++|.+.+. +. +..+++|+.|++
T Consensus 161 ~l~~~~~~~-~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~~~~L~~L~l~~n~l~ 234 (347)
T 4fmz_A 161 TVTESKVKD-VTP-IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDI-TP-VANMTRLNSLKIGNNKIT 234 (347)
T ss_dssp ECCSSCCCC-CGG-GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCC
T ss_pred EecCCCcCC-chh-hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCCCC-ch-hhcCCcCCEEEccCCccC
Confidence 555555552 222 5566666666666666652 322 56667777777777776632 22 677888999988
Q ss_pred -----CCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccc
Q 043038 137 -----ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVP 207 (271)
Q Consensus 137 -----~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~ 207 (271)
..+++|+.|++++|.+++ + +.+..+++|+.|++++|.+++ + ..+..++.|+. .|.+.+.....+.
T Consensus 235 ~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~-- 308 (347)
T 4fmz_A 235 DLSPLANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIG-- 308 (347)
T ss_dssp CCGGGTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHH--
T ss_pred CCcchhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhh--
Confidence 456789999999999985 3 568899999999999999984 4 35677777776 5656553222111
Q ss_pred cchhhhhhhhceec--cccchhhHHHHHhhHhhhhhcCCccc
Q 043038 208 LDVDVILMEKASVV--SREEVVEYNEILNLVMVTIVSRNDLL 247 (271)
Q Consensus 208 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~~L~L~~n~l~ 247 (271)
....+..+.+. .....+. ...+++|+.|++++|.+.
T Consensus 309 ---~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 309 ---GLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp ---TCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred ---ccccCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence 11222222222 1222222 467899999999999874
No 34
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=5.2e-25 Score=199.54 Aligned_cols=251 Identities=15% Similarity=0.099 Sum_probs=133.9
Q ss_pred ccCCCcccEEECcCCCCCCCcccc--CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCC
Q 043038 4 LTKFTQLLFRSLDSNNMSGLLPLI--SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQ 81 (271)
Q Consensus 4 ~~~~~~L~~L~l~~n~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 81 (271)
+..+++|+.|++++|.+... |.. +++|+.|++++|.+ +.+|.. .++.|++|++++|...... .+..++
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l-~~l~~~~~L~~L~l~~n~l-~~lp~~------~l~~L~~L~l~~n~~~~~~--~~~~l~ 350 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYL-EDVPKHFKWQSLSIIRCQL-KQFPTL------DLPFLKSLTLTMNKGSISF--KKVALP 350 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCC-CCCCTTCCCSEEEEESCCC-SSCCCC------CCSSCCEEEEESCSSCEEC--CCCCCT
T ss_pred cccCCCCCEEEecCccchhh-hhccccccCCEEEcccccC-cccccC------CCCccceeeccCCcCccch--hhccCC
Confidence 55566666677766666432 211 34666666666666 334421 2555555665555332111 344555
Q ss_pred CCCEEEccCCccccc--CCcccccCCCccEEEccCCccccccCccccCCCCccEEec--------------CCCCcccEE
Q 043038 82 NLKILKLSNNKFIGN--LPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV--------------ERFSRMVVL 145 (271)
Q Consensus 82 ~L~~L~l~~n~~~~~--~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l--------------~~~~~L~~L 145 (271)
+|++|++++|.+++. .+..+..+++|+.+++++|.+. .+|..+..+++|+.|++ ..+++|+.|
T Consensus 351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 429 (606)
T 3vq2_A 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429 (606)
T ss_dssp TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence 555555555555432 2444555555555555555554 34444555555555554 223455566
Q ss_pred EeccCccCCCCchhhhcCccccEEeccCCccce-ecCcccccccCCcc----ccccccccccccccccchhhhhhhhcee
Q 043038 146 NLRSNKFHGPLPTRFCDLAILQILDIADNNLSG-AIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASV 220 (271)
Q Consensus 146 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (271)
++++|.+++..|..+..+++|+.|++++|.+++ ..|..+..++.|+. .|.+.+.....+. ....+..+.+
T Consensus 430 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~L 504 (606)
T 3vq2_A 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD-----TLHRLQLLNM 504 (606)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT-----TCTTCCEEEC
T ss_pred ECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhc-----ccccCCEEEC
Confidence 666666655555555556666666666666554 24555555555554 3444332111110 1111111111
Q ss_pred c---cccchhhHHHHHhhHhhhhhcCCcccccccHhhhccC-CCCEEEccCCCCC
Q 043038 221 V---SREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLK-ATQSLNFSHNTFT 271 (271)
Q Consensus 221 ~---~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~i~ 271 (271)
. ..+..+..+..+++|+.|++++|++. .+|..+..++ +|+.+++++|.++
T Consensus 505 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp CSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCC
T ss_pred CCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcc
Confidence 1 11222344456788888888888886 4777788886 5888888888763
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.92 E-value=3.6e-24 Score=196.50 Aligned_cols=250 Identities=14% Similarity=0.139 Sum_probs=182.0
Q ss_pred ccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEcc
Q 043038 10 LLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLS 89 (271)
Q Consensus 10 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 89 (271)
-+.++++++.+...++...+++++|++++|.+++..+..+. ++++|++|++++|.+++..|.+|.++++|++|+++
T Consensus 6 ~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 81 (680)
T 1ziw_A 6 HEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFT----RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81 (680)
T ss_dssp SSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGG----GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECC
T ss_pred CCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHh----CCCcCcEEECCCCccCccCHHHHhcccCcCEEECC
Confidence 36789999998765444456999999999999875544454 48999999999999998888999999999999999
Q ss_pred CCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec-------------CCCCcccEEEeccCccCCCC
Q 043038 90 NNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV-------------ERFSRMVVLNLRSNKFHGPL 156 (271)
Q Consensus 90 ~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l-------------~~~~~L~~L~l~~n~l~~~~ 156 (271)
+|.++...+..|..+++|+.|++++|.+.+..|..+..+++|+.|++ ..+++|+.|++++|.+++..
T Consensus 82 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 161 (680)
T 1ziw_A 82 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC
T ss_pred CCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccC
Confidence 99999555557999999999999999998665678899999999998 35678999999999999777
Q ss_pred chhhh--cCccccEEeccCCccceecCcccccccCCcc-------------------------------ccccccccccc
Q 043038 157 PTRFC--DLAILQILDIADNNLSGAIPNYINNVTGMVT-------------------------------TNSFSRSAQQH 203 (271)
Q Consensus 157 ~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~-------------------------------~n~~~~~~~~~ 203 (271)
+..+. .+++|+.|++++|.+++..|..+..+..++. .+.+.+.....
T Consensus 162 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~ 241 (680)
T 1ziw_A 162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241 (680)
T ss_dssp HHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT
T ss_pred HHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH
Confidence 76665 4589999999999998777777665554432 22222211111
Q ss_pred cccccchhhhh--hhhceec---cccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCC
Q 043038 204 LHVPLDVDVIL--MEKASVV---SREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHN 268 (271)
Q Consensus 204 ~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 268 (271)
+ ..... +..+++. .....+..++.+++|++|++++|.+.+..|..|..+++|+.|++++|
T Consensus 242 ~-----~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 242 F-----LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp T-----GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred h-----hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence 1 11111 2222221 12222344566778888888888777666666666666666655543
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=1.1e-24 Score=187.24 Aligned_cols=249 Identities=15% Similarity=0.124 Sum_probs=161.6
Q ss_pred CCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCC
Q 043038 6 KFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQN 82 (271)
Q Consensus 6 ~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 82 (271)
.+.+++++++++|.+....+.. +++|++|++++|.++...+..+ ..+++|++|++++|.++...|..|..+++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAF----AYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTT----TTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhc----cCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 4678999999999887654433 6899999999999876444344 44899999999999999777788899999
Q ss_pred CCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec----------CCCCcccEEEeccCcc
Q 043038 83 LKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV----------ERFSRMVVLNLRSNKF 152 (271)
Q Consensus 83 L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l----------~~~~~L~~L~l~~n~l 152 (271)
|++|++++|.++...+..|..+++|+.|++++|.+.+..+..+..+++|+.|++ ..+++|+.|++++|.+
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCC
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccc
Confidence 999999999998444445688999999999999998666677888888888887 3456677777777766
Q ss_pred CCCCchhhhcCccccEEeccCCccceecCcccccccCCcc-ccccccccccccccccchhhhhhhhceec---cccchhh
Q 043038 153 HGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT-TNSFSRSAQQHLHVPLDVDVILMEKASVV---SREEVVE 228 (271)
Q Consensus 153 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 228 (271)
++ +.....|+.|++++|.+.........++..|.. .|.+.+.. .......+..+++. .....+.
T Consensus 199 ~~-----~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~-------~l~~l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 199 ST-----LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA-------WLLNYPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp SE-----EECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCG-------GGGGCTTCSEEECCSSCCCEEESG
T ss_pred cc-----cCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccH-------HHcCCCCccEEECCCCcCCCcChh
Confidence 52 122345666666666665332222222222222 33333320 00001111111111 1111233
Q ss_pred HHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038 229 YNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271 (271)
Q Consensus 229 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 271 (271)
.+..+++|+.|++++|.+.+ +|..+..+++|++|++++|+++
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~ 308 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL 308 (390)
T ss_dssp GGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC
T ss_pred HccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce
Confidence 33456666777777776654 5555566677777777777653
No 37
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=1.7e-25 Score=208.49 Aligned_cols=129 Identities=26% Similarity=0.389 Sum_probs=77.6
Q ss_pred CCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCc-ccc-cCCcccccCC-------CccEEEccCCccccccCc--
Q 043038 55 ETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNK-FIG-NLPNSFGSLA-------FLVWLDLGKNRLFGTIPA-- 123 (271)
Q Consensus 55 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~l~-------~L~~l~l~~n~l~~~~~~-- 123 (271)
++++|++|++++|.+.+.+|..|..+++|+.|++++|+ +++ .+|..+..++ +|+.|++++|.+. .+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence 36666666666666655666666666666666666665 554 4454444333 6666666666666 5555
Q ss_pred cccCCCCccEEec-----------CCCCcccEEEeccCccCCCCchhhhcCcc-ccEEeccCCccceecCccccc
Q 043038 124 TLKNCTALESLDV-----------ERFSRMVVLNLRSNKFHGPLPTRFCDLAI-LQILDIADNNLSGAIPNYINN 186 (271)
Q Consensus 124 ~~~~l~~L~~L~l-----------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~ 186 (271)
.+..+++|+.|++ ..+++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~ 640 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNA 640 (876)
T ss_dssp HHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCT
T ss_pred hhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhc
Confidence 5666666666655 23455666666666666 55656666665 666666666665 55555443
No 38
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=1e-24 Score=183.58 Aligned_cols=248 Identities=18% Similarity=0.177 Sum_probs=147.1
Q ss_pred CcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCC
Q 043038 8 TQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLK 84 (271)
Q Consensus 8 ~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 84 (271)
++++.|++++|.+.+..|.. +++|++|++++|.+++..|..+. ++++|++|++++|.++ .+|..+. ++|+
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~-~l~~~~~--~~L~ 126 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFS----PLRKLQKLYISKNHLV-EIPPNLP--SSLV 126 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGST----TCTTCCEEECCSSCCC-SCCSSCC--TTCC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhh----CcCCCCEEECCCCcCC-ccCcccc--ccCC
Confidence 57888888888887665544 46888888888888764454443 4888888888888887 5555543 7888
Q ss_pred EEEccCCcccccCCcccccCCCccEEEccCCcccc--ccCccccCCCCccEEecCC----------CCcccEEEeccCcc
Q 043038 85 ILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFG--TIPATLKNCTALESLDVER----------FSRMVVLNLRSNKF 152 (271)
Q Consensus 85 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~--~~~~~~~~l~~L~~L~l~~----------~~~L~~L~l~~n~l 152 (271)
+|++++|.++...+..+..+++|+.+++++|.+.. ..+..+..+ +|+.+++.. .++|+.|++++|.+
T Consensus 127 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i 205 (332)
T 2ft3_A 127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKI 205 (332)
T ss_dssp EEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCC
T ss_pred EEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcC
Confidence 88888888875555667788888888888887752 344455544 555555511 13566666666666
Q ss_pred CCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceec--cccch
Q 043038 153 HGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVV--SREEV 226 (271)
Q Consensus 153 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 226 (271)
++..+..+..+++|+.|++++|++++..+..+..++.|+. .|.+... |..+. ....+..+.+. ....+
T Consensus 206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-----p~~l~-~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV-----PAGLP-DLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBC-----CTTGG-GCTTCCEEECCSSCCCBC
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeec-----Chhhh-cCccCCEEECCCCCCCcc
Confidence 5544455555666666666666665444445555555544 3333321 11100 00011111110 00000
Q ss_pred -hhHH------HHHhhHhhhhhcCCccc--ccccHhhhccCCCCEEEccCCC
Q 043038 227 -VEYN------EILNLVMVTIVSRNDLL--KNVPLEVRNLKATQSLNFSHNT 269 (271)
Q Consensus 227 -~~~~------~~~~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~l~~n~ 269 (271)
...+ ...++++.+++++|.+. +..|..|..++.|+.+++++|+
T Consensus 280 ~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 280 GVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 0000 11356778888888875 4567778888888888888875
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=1.2e-24 Score=204.19 Aligned_cols=258 Identities=16% Similarity=0.120 Sum_probs=191.0
Q ss_pred CCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCC
Q 043038 6 KFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQN 82 (271)
Q Consensus 6 ~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 82 (271)
-.+++++||+++|.+.+..|.. +++|++|++++|...+.++ +..|.++++|++|++++|.++...|..|.++++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~---~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID---KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEEC---TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccC---HHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence 4578999999999999877766 5699999999996554442 334556999999999999999777999999999
Q ss_pred CCEEEccCCcccccCCcc--cccCCCccEEEccCCccccccC-ccccCCCCccEEecCC-------------C--CcccE
Q 043038 83 LKILKLSNNKFIGNLPNS--FGSLAFLVWLDLGKNRLFGTIP-ATLKNCTALESLDVER-------------F--SRMVV 144 (271)
Q Consensus 83 L~~L~l~~n~~~~~~~~~--~~~l~~L~~l~l~~n~l~~~~~-~~~~~l~~L~~L~l~~-------------~--~~L~~ 144 (271)
|++|++++|.+++..+.. +..+++|+.|++++|.+.+..+ ..+..+++|+.|+++. + ++|+.
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence 999999999998655544 8899999999999999986544 5789999999999822 1 67899
Q ss_pred EEeccCccCCCCchhhhcCcc------ccEEeccCCccceecCcccccc-------------------------------
Q 043038 145 LNLRSNKFHGPLPTRFCDLAI------LQILDIADNNLSGAIPNYINNV------------------------------- 187 (271)
Q Consensus 145 L~l~~n~l~~~~~~~~~~l~~------L~~L~l~~n~l~~~~~~~~~~~------------------------------- 187 (271)
|+++.|.+++..|..+..+.. |+.|++++|.+.+..+..+...
T Consensus 179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~ 258 (844)
T 3j0a_A 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258 (844)
T ss_dssp CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence 999999998877776665554 9999999998775555444321
Q ss_pred -------cCCcc----ccccccccccccccccchhhhhhhhceec---cccchhhHHHHHhhHhhhhhcCCcccccccHh
Q 043038 188 -------TGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVV---SREEVVEYNEILNLVMVTIVSRNDLLKNVPLE 253 (271)
Q Consensus 188 -------~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 253 (271)
+.++. .|.+.+. +.........+..+.+. .....+..+..+++|+.|++++|.+.+..|..
T Consensus 259 ~f~~l~~~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 333 (844)
T 3j0a_A 259 TFAGLARSSVRHLDLSHGFVFSL-----NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN 333 (844)
T ss_dssp TTTTTTTSCCCEEECTTCCCCEE-----CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCS
T ss_pred hhhccccCCccEEECCCCccccc-----ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHH
Confidence 11221 2222221 11111112222222222 22233455677889999999999998777889
Q ss_pred hhccCCCCEEEccCCCCC
Q 043038 254 VRNLKATQSLNFSHNTFT 271 (271)
Q Consensus 254 l~~l~~L~~L~l~~n~i~ 271 (271)
|..+++|+.|++++|.|+
T Consensus 334 ~~~l~~L~~L~L~~N~i~ 351 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKNHIA 351 (844)
T ss_dssp CSSCTTCCEEECCSCCCC
T ss_pred hcCCCCCCEEECCCCCCC
Confidence 999999999999999874
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=1.1e-24 Score=195.75 Aligned_cols=137 Identities=20% Similarity=0.185 Sum_probs=89.4
Q ss_pred cccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEc
Q 043038 9 QLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKL 88 (271)
Q Consensus 9 ~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 88 (271)
..+++++++|.+.+.++...+++++|++++|.+++..+..+. ++++|++|++++|.+++..|.+|.++++|++|++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDIS----FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTT----TCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhc----cCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 346777777777754333346777777777777664333333 3777777777777777555677777777777777
Q ss_pred cCCcccccCCcccccCCCccEEEccCCcccc-ccCccccCCCCccEEec----------CCCCcc--cEEEeccCcc
Q 043038 89 SNNKFIGNLPNSFGSLAFLVWLDLGKNRLFG-TIPATLKNCTALESLDV----------ERFSRM--VVLNLRSNKF 152 (271)
Q Consensus 89 ~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~-~~~~~~~~l~~L~~L~l----------~~~~~L--~~L~l~~n~l 152 (271)
++|+++ .+|.. .+++|+.|++++|.+.+ ..|..+..+++|+.|++ ..+++| +.|++++|.+
T Consensus 108 s~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 108 SHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp TTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSC
T ss_pred CCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccc
Confidence 777776 44444 56777777777777764 23456777777777776 222334 7777777666
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=4.4e-24 Score=179.47 Aligned_cols=206 Identities=20% Similarity=0.220 Sum_probs=169.5
Q ss_pred CCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCcc
Q 043038 29 SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLV 108 (271)
Q Consensus 29 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 108 (271)
.+++.|++++|.++. +|..+.. +++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|+
T Consensus 81 ~~l~~L~L~~n~l~~-lp~~l~~----l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 81 PGRVALELRSVPLPQ-FPDQAFR----LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLR 153 (328)
T ss_dssp TTCCEEEEESSCCSS-CCSCGGG----GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCC
T ss_pred cceeEEEccCCCchh-cChhhhh----CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCC
Confidence 689999999999984 6655544 899999999999999 88999999999999999999999 7888899999999
Q ss_pred EEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceecCccccccc
Q 043038 109 WLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVT 188 (271)
Q Consensus 109 ~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 188 (271)
.|++++|...+.+|..+....-... +..+++|+.|++++|.++ .+|..+..+++|+.|++++|.++ .+|..+..++
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~--~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~ 229 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGE--HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLP 229 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCC--EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCT
T ss_pred EEECCCCCCccccChhHhhccchhh--hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCC
Confidence 9999998887788876654111111 134567788889999998 78889999999999999999998 5777788888
Q ss_pred CCcc----ccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEE
Q 043038 189 GMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLN 264 (271)
Q Consensus 189 ~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 264 (271)
.|+. .|.+.+. +| ..++.+++|+.|++++|.+.+.+|.++..+++|+.|+
T Consensus 230 ~L~~L~Ls~n~~~~~----~p----------------------~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 283 (328)
T 4fcg_A 230 KLEELDLRGCTALRN----YP----------------------PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283 (328)
T ss_dssp TCCEEECTTCTTCCB----CC----------------------CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEE
T ss_pred CCCEEECcCCcchhh----hH----------------------HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEe
Confidence 8877 3444442 22 2224678899999999999899999999999999999
Q ss_pred ccCCCCC
Q 043038 265 FSHNTFT 271 (271)
Q Consensus 265 l~~n~i~ 271 (271)
+++|++.
T Consensus 284 L~~n~~~ 290 (328)
T 4fcg_A 284 LRGCVNL 290 (328)
T ss_dssp CTTCTTC
T ss_pred CCCCCch
Confidence 9999763
No 42
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=1.7e-24 Score=194.55 Aligned_cols=86 Identities=24% Similarity=0.265 Sum_probs=69.4
Q ss_pred CccCCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCC-CCCcccc
Q 043038 3 NLTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQG-ELPDCWM 78 (271)
Q Consensus 3 ~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~ 78 (271)
+|+++++|++|++++|.+.+..|.. +++|++|++++|.++. +|.. .+++|++|++++|.++. ..|..|.
T Consensus 71 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~------~l~~L~~L~Ls~N~l~~l~~p~~~~ 143 (562)
T 3a79_B 71 DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCC------PMASLRHLDLSFNDFDVLPVCKEFG 143 (562)
T ss_dssp GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECSC------CCTTCSEEECCSSCCSBCCCCGGGG
T ss_pred hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCcc------ccccCCEEECCCCCccccCchHhhc
Confidence 5788899999999999998776765 4689999999999874 5544 37889999999999874 2457888
Q ss_pred CCCCCCEEEccCCcccc
Q 043038 79 SDQNLKILKLSNNKFIG 95 (271)
Q Consensus 79 ~l~~L~~L~l~~n~~~~ 95 (271)
++++|++|++++|+++.
T Consensus 144 ~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 144 NLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp GCTTCCEEEEECSBCCT
T ss_pred ccCcccEEecCCCcccc
Confidence 88899999988888763
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.6e-24 Score=194.76 Aligned_cols=249 Identities=15% Similarity=0.126 Sum_probs=165.4
Q ss_pred CCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCC
Q 043038 6 KFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQN 82 (271)
Q Consensus 6 ~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 82 (271)
.+..++.+++++|.+...++.. +++|++|++++|.+++..+..+. .+++|++|++++|.+++..|..|.++++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA----YAHTIQKLYMGFNAIRYLPPHVFQNVPL 124 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTT----TCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhc----CCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence 4577899999999887655543 67999999999998875444444 4899999999999999777778899999
Q ss_pred CCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec----------CCCCcccEEEeccCcc
Q 043038 83 LKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV----------ERFSRMVVLNLRSNKF 152 (271)
Q Consensus 83 L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l----------~~~~~L~~L~l~~n~l 152 (271)
|++|++++|.++...+..|..+++|+.|++++|.+.+..|..+..+++|+.|++ ..+++|+.|++++|.+
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCC
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcc
Confidence 999999999998555555788999999999999998777777888888888887 3456777777777776
Q ss_pred CCCCchhhhcCccccEEeccCCccceecCcccccccCCcc-ccccccccccccccccchhhhhhhhceec---cccchhh
Q 043038 153 HGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT-TNSFSRSAQQHLHVPLDVDVILMEKASVV---SREEVVE 228 (271)
Q Consensus 153 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 228 (271)
++ +.....|+.|++++|.+....+....++..|.. .|.+.+.. .......+..+.+. ..+..+.
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~-------~l~~l~~L~~L~Ls~N~l~~~~~~ 272 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA-------WLLNYPGLVEVDLSYNELEKIMYH 272 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCG-------GGGGCTTCSEEECCSSCCCEEESG
T ss_pred cc-----ccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCCh-------hhccCCCCCEEECCCCccCCCCHH
Confidence 53 122345666666666665333222222332222 33333310 00001111111111 1112233
Q ss_pred HHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038 229 YNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271 (271)
Q Consensus 229 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 271 (271)
.++.+++|+.|++++|.+.+ +|..+..+++|+.|++++|.++
T Consensus 273 ~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~ 314 (597)
T 3oja_B 273 PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL 314 (597)
T ss_dssp GGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC
T ss_pred HhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC
Confidence 34556667777777777654 5656666777777777777653
No 44
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.9e-23 Score=170.82 Aligned_cols=201 Identities=21% Similarity=0.224 Sum_probs=154.3
Q ss_pred cccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEc
Q 043038 9 QLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKL 88 (271)
Q Consensus 9 ~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 88 (271)
..+.++++++.+...+....++++.|++++|.++...+. .|.++++|++|++++|.++...+..|..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSK----AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTT----SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHH----HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 467899999999864433456899999999998863333 3445899999999999998555566788999999999
Q ss_pred cCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccE
Q 043038 89 SNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQI 168 (271)
Q Consensus 89 ~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 168 (271)
++|.++...+..+..+++|+.|++++|.+.+..+..+..++ +|++|++++|.+++..+..+..+++|+.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 161 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT-----------KLTYLSLGYNELQSLPKGVFDKLTSLKE 161 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT-----------TCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc-----------CCCEEECCCCcCCccCHhHccCCcccce
Confidence 99999866666778899999999999999855555555555 4556668999998666666888999999
Q ss_pred EeccCCccceecCcccccccCCccccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCcccc
Q 043038 169 LDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLK 248 (271)
Q Consensus 169 L~l~~n~l~~~~~~~~~~~~~L~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 248 (271)
|++++|++++..+..+.. +++|+.|++++|.+.+
T Consensus 162 L~L~~n~l~~~~~~~~~~----------------------------------------------l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 162 LRLYNNQLKRVPEGAFDK----------------------------------------------LTELKTLKLDNNQLKR 195 (270)
T ss_dssp EECCSSCCSCCCTTTTTT----------------------------------------------CTTCCEEECCSSCCSC
T ss_pred eEecCCcCcEeChhHhcc----------------------------------------------CCCcCEEECCCCcCCc
Confidence 999999987443333333 4456778888888776
Q ss_pred cccHhhhccCCCCEEEccCCCC
Q 043038 249 NVPLEVRNLKATQSLNFSHNTF 270 (271)
Q Consensus 249 ~~~~~l~~l~~L~~L~l~~n~i 270 (271)
..+..+..+++|+.|++++|.+
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 196 VPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCB
T ss_pred CCHHHhccccCCCEEEecCCCe
Confidence 5555677788888888888765
No 45
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=9.7e-24 Score=173.89 Aligned_cols=233 Identities=21% Similarity=0.170 Sum_probs=165.6
Q ss_pred CCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcc-cCCCCCccccCCC
Q 043038 6 KFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNY-LQGELPDCWMSDQ 81 (271)
Q Consensus 6 ~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~ 81 (271)
-.+++++|++++|.+.+..+.. +++|++|++++|.+++..+..+. .+++|++|++++|. ++...+..|..++
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~l~~n~~l~~~~~~~~~~l~ 105 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT----GLALLEQLDLSDNAQLRSVDPATFHGLG 105 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT----TCTTCCEEECCSCTTCCCCCTTTTTTCT
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcC----CccCCCEEeCCCCCCccccCHHHhcCCc
Confidence 3468999999999998766554 46899999999998875454444 48999999999997 7755688899999
Q ss_pred CCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec-------------CCCCcccEEEec
Q 043038 82 NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV-------------ERFSRMVVLNLR 148 (271)
Q Consensus 82 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l-------------~~~~~L~~L~l~ 148 (271)
+|++|++++|.+++..+..+..+++|+.+++++|.+.+..+..+..+++|+.|++ ..+++|+.|+++
T Consensus 106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185 (285)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECC
Confidence 9999999999998777778888999999999999998554455777777777765 334566666777
Q ss_pred cCccCCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceecccc
Q 043038 149 SNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSRE 224 (271)
Q Consensus 149 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (271)
+|.+++..|..+..+++|+.|++++|.+++..+..+..++.|+. .|.+...
T Consensus 186 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~------------------------- 240 (285)
T 1ozn_A 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD------------------------- 240 (285)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS-------------------------
T ss_pred CCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC-------------------------
Confidence 77666555666666667777777777666443344555555544 3333321
Q ss_pred chhhHHHHHhhHhhhhhcCCcccccccHhhhc--cCCCCEEEccCCC
Q 043038 225 EVVEYNEILNLVMVTIVSRNDLLKNVPLEVRN--LKATQSLNFSHNT 269 (271)
Q Consensus 225 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--l~~L~~L~l~~n~ 269 (271)
....+....++.+..+.+.+....|..+.+ +..++..++.+|.
T Consensus 241 --~~~~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~ 285 (285)
T 1ozn_A 241 --CRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA 285 (285)
T ss_dssp --GGGHHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred --CCcHHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence 000122344566667777777677887754 6777777777763
No 46
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=8.5e-24 Score=173.45 Aligned_cols=218 Identities=17% Similarity=0.085 Sum_probs=161.5
Q ss_pred EEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCC
Q 043038 12 FRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNN 91 (271)
Q Consensus 12 ~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 91 (271)
..+..+..+...+....+++++|++++|.+++..+..+ .++++|++|++++|.++...+..|..+++|++|++++|
T Consensus 11 ~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSF----FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTT----TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred eEEecCCCccccCCCCCCCccEEECCCCcccccCHhHh----ccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence 45666666654333334579999999999886444333 44889999999999998666668889999999999999
Q ss_pred cccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCC-CchhhhcCccccEEe
Q 043038 92 KFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGP-LPTRFCDLAILQILD 170 (271)
Q Consensus 92 ~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~ 170 (271)
.++...+..+..+++|+.|++++|.+.+..+..+..++ +|++|++++|.+++. +|..+..+++|+.|+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----------~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK-----------TLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCT-----------TCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchhcccCC-----------CCCEEECcCCccceecCchhhccCCCCCEEE
Confidence 99877777888899999999999988754443454444 455666889998753 588899999999999
Q ss_pred ccCCccceecCcccccccCCcc--------ccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhc
Q 043038 171 IADNNLSGAIPNYINNVTGMVT--------TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVS 242 (271)
Q Consensus 171 l~~n~l~~~~~~~~~~~~~L~~--------~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 242 (271)
+++|++++..+..+..+..+.. .|.+.+.....+ ...+|+.|+++
T Consensus 156 Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~---------------------------~~~~L~~L~L~ 208 (276)
T 2z62_A 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF---------------------------KEIRLKELALD 208 (276)
T ss_dssp CCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS---------------------------CSCCEEEEECC
T ss_pred CCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc---------------------------CCCcccEEECC
Confidence 9999998666666666655542 334433211111 12368999999
Q ss_pred CCcccccccHhhhccCCCCEEEccCCCCC
Q 043038 243 RNDLLKNVPLEVRNLKATQSLNFSHNTFT 271 (271)
Q Consensus 243 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 271 (271)
+|.+.+..+..|..+++|+.|++++|.++
T Consensus 209 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 209 TNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp SSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CCceeecCHhHhcccccccEEEccCCccc
Confidence 99998765666799999999999999874
No 47
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=2e-23 Score=172.49 Aligned_cols=202 Identities=24% Similarity=0.232 Sum_probs=161.6
Q ss_pred ccCCCcccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCC
Q 043038 4 LTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNL 83 (271)
Q Consensus 4 ~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 83 (271)
++++++++.++++++.+...++...++++.|++++|.+++..+..+. .+++|++|++++|.++ .++.. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~----~l~~L~~L~L~~n~l~-~~~~~-~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLM----PYTRLTQLNLDRAELT-KLQVD-GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGT----TCTTCCEEECTTSCCC-EEECC-SCCTTC
T ss_pred ccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhh----cCCCCCEEECCCCccC-cccCC-CCCCcC
Confidence 67889999999999999876555567999999999999875454444 5999999999999998 44443 788999
Q ss_pred CEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcC
Q 043038 84 KILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDL 163 (271)
Q Consensus 84 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 163 (271)
++|++++|+++ .+|..+..+++|+.|++++|.+++..+..+..+++ |+.|++++|.+++..+..|..+
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~-----------L~~L~L~~N~l~~~~~~~~~~l 147 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE-----------LQELYLKGNELKTLPPGLLTPT 147 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTT-----------CCEEECTTSCCCCCCTTTTTTC
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCC-----------CCEEECCCCCCCccChhhcccc
Confidence 99999999998 77878889999999999999998554456665554 5566699999987777778899
Q ss_pred ccccEEeccCCccceecCcccccccCCccccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcC
Q 043038 164 AILQILDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSR 243 (271)
Q Consensus 164 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 243 (271)
++|+.|++++|++++..+..+. .+++|+.|++++
T Consensus 148 ~~L~~L~L~~N~l~~l~~~~~~----------------------------------------------~l~~L~~L~L~~ 181 (290)
T 1p9a_G 148 PKLEKLSLANNNLTELPAGLLN----------------------------------------------GLENLDTLLLQE 181 (290)
T ss_dssp TTCCEEECTTSCCSCCCTTTTT----------------------------------------------TCTTCCEEECCS
T ss_pred cCCCEEECCCCcCCccCHHHhc----------------------------------------------CcCCCCEEECCC
Confidence 9999999999999833322223 344567788888
Q ss_pred CcccccccHhhhccCCCCEEEccCCCC
Q 043038 244 NDLLKNVPLEVRNLKATQSLNFSHNTF 270 (271)
Q Consensus 244 n~l~~~~~~~l~~l~~L~~L~l~~n~i 270 (271)
|.+. .+|..+..+++|+.+++++|.+
T Consensus 182 N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 182 NSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp SCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CcCC-ccChhhcccccCCeEEeCCCCc
Confidence 8886 4788888888888888888865
No 48
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=1.9e-25 Score=186.58 Aligned_cols=233 Identities=19% Similarity=0.167 Sum_probs=157.5
Q ss_pred cCCCcccEEECcCCCCCCCcccc-CCCccEEEccCCccc-cccchhhh---hhccCCCcccEEEccCcccCCCCCccc--
Q 043038 5 TKFTQLLFRSLDSNNMSGLLPLI-SSNLVYLGLSDNSFL-GSISHFLC---DKINETKRLEALKLNDNYLQGELPDCW-- 77 (271)
Q Consensus 5 ~~~~~L~~L~l~~n~~~~~~~~~-~~~L~~L~l~~n~~~-~~~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~-- 77 (271)
+..++|+.+++++|.+ .+|.. ...++.|++++|.++ ..+|.... ..+.++++|++|++++|.+++..|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 3455677777777777 44443 234777777777763 23443332 011136777777777777776666655
Q ss_pred cCCCCCCEEEccCCcccccCCcccccC-----CCccEEEccCCccccccCccccCCCCccEEec----------------
Q 043038 78 MSDQNLKILKLSNNKFIGNLPNSFGSL-----AFLVWLDLGKNRLFGTIPATLKNCTALESLDV---------------- 136 (271)
Q Consensus 78 ~~l~~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l---------------- 136 (271)
..+++|++|++++|++++. |..+..+ ++|+.|++++|.+.+..|..+..+++|+.|++
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 6777777777777777754 6656555 77777777777777555567777777777776
Q ss_pred -CCCCcccEEEeccCccCCC--Cc-hhhhcCccccEEeccCCccceecC-cccccccCCcc----ccccccccccccccc
Q 043038 137 -ERFSRMVVLNLRSNKFHGP--LP-TRFCDLAILQILDIADNNLSGAIP-NYINNVTGMVT----TNSFSRSAQQHLHVP 207 (271)
Q Consensus 137 -~~~~~L~~L~l~~n~l~~~--~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~----~n~~~~~~~~~~~~~ 207 (271)
..+++|++|++++|.+++. .+ ..+..+++|+.|++++|++++..| ..+..++.|+. .|.+.. +|..
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----ip~~ 271 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-----VPKG 271 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS-----CCSS
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh-----hhhh
Confidence 2456788888999998731 12 334567899999999999986553 34444556655 455553 2211
Q ss_pred cchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038 208 LDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271 (271)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 271 (271)
+. ++|+.|++++|++.+. |. +..+++|+.|++++|.|+
T Consensus 272 ----------------------~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 272 ----------------------LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp ----------------------CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred ----------------------cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 01 6789999999999874 66 999999999999999985
No 49
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=7.9e-23 Score=179.76 Aligned_cols=164 Identities=24% Similarity=0.347 Sum_probs=96.3
Q ss_pred CCCccCCCcccEEECcCCCCCCCccc-cCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccC
Q 043038 1 MPNLTKFTQLLFRSLDSNNMSGLLPL-ISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMS 79 (271)
Q Consensus 1 ~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 79 (271)
+|.+..+++|++|++++|.+.+..+- .+++|++|++++|.+.+..+ +.++++|++|++++|.++. .+. +..
T Consensus 61 l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~-~~~-~~~ 132 (466)
T 1o6v_A 61 IDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP------LANLTNLTGLTLFNNQITD-IDP-LKN 132 (466)
T ss_dssp CTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCC-CGG-GTT
T ss_pred CcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh------hcCCCCCCEEECCCCCCCC-ChH-HcC
Confidence 35677788888888888888766542 15678888888888775322 3347778888888877773 333 667
Q ss_pred CCCCCEEEccCCcccccCCc--------------------ccccCCCccEEEccCCccccccCccccCCCCccEEec---
Q 043038 80 DQNLKILKLSNNKFIGNLPN--------------------SFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV--- 136 (271)
Q Consensus 80 l~~L~~L~l~~n~~~~~~~~--------------------~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l--- 136 (271)
+++|++|++++|.+.+ .+. .+..+++|+.+++++|.+.+ + ..+..+++|+.|++
T Consensus 133 l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n 209 (466)
T 1o6v_A 133 LTNLNRLELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD-I-SVLAKLTNLESLIATNN 209 (466)
T ss_dssp CTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSS
T ss_pred CCCCCEEECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC-C-hhhccCCCCCEEEecCC
Confidence 7777777777776653 221 13344555555555555542 2 22444555555554
Q ss_pred --------CCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccc
Q 043038 137 --------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177 (271)
Q Consensus 137 --------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 177 (271)
..+++|+.|++++|.+++ + ..+..+++|+.|++++|.+.
T Consensus 210 ~l~~~~~~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~ 256 (466)
T 1o6v_A 210 QISDITPLGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQIS 256 (466)
T ss_dssp CCCCCGGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCC
T ss_pred cccccccccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccc
Confidence 223445555555555542 1 23444555555555555554
No 50
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=1.5e-23 Score=188.57 Aligned_cols=124 Identities=20% Similarity=0.160 Sum_probs=62.5
Q ss_pred ccCCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCC
Q 043038 4 LTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSD 80 (271)
Q Consensus 4 ~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 80 (271)
|.++++|++|++++|.+.+..|.. +++|++|++++|.++...|..+. ++++|++|++++|.++...+..|..+
T Consensus 48 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~l~~~~~~~l 123 (570)
T 2z63_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS----GLSSLQKLVAVETNLASLENFPIGHL 123 (570)
T ss_dssp TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT----TCTTCCEEECTTSCCCCSTTCSCTTC
T ss_pred hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhc----CccccccccccccccccCCCcccccc
Confidence 455555555555555555443333 23555555555555442222222 35555555555555553333345555
Q ss_pred CCCCEEEccCCcccc-cCCcccccCCCccEEEccCCccccccCccccCCCCc
Q 043038 81 QNLKILKLSNNKFIG-NLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTAL 131 (271)
Q Consensus 81 ~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L 131 (271)
++|++|++++|.++. ..|..+..+++|+.|++++|.+.+..+..+..+++|
T Consensus 124 ~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred ccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 555555555555553 235555555556666665555554333344433333
No 51
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=8.9e-24 Score=189.24 Aligned_cols=166 Identities=22% Similarity=0.213 Sum_probs=133.1
Q ss_pred CcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCC
Q 043038 8 TQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLK 84 (271)
Q Consensus 8 ~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 84 (271)
+++++|++++|.+.+..|.. +++|++|++++|.+++..|..+. ++++|++|++++|.+++..+..|.++++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 101 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFY----SLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTT----TCTTCCEEECTTSCCCSCCHHHHTTCTTCC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcc----ccccCCEEECCCCccCccCHHHhccCCCCc
Confidence 57999999999998776655 46899999999998875554444 489999999999999866666789999999
Q ss_pred EEEccCCccccc-CCcccccCCCccEEEccCCccccccC-ccccCCCCccEEec-------------CCCCcccEEEecc
Q 043038 85 ILKLSNNKFIGN-LPNSFGSLAFLVWLDLGKNRLFGTIP-ATLKNCTALESLDV-------------ERFSRMVVLNLRS 149 (271)
Q Consensus 85 ~L~l~~n~~~~~-~~~~~~~l~~L~~l~l~~n~l~~~~~-~~~~~l~~L~~L~l-------------~~~~~L~~L~l~~ 149 (271)
+|++++|.+++. .|..+..+++|+.|++++|...+.+| ..+..+++|+.|++ ..+++|+.|+++.
T Consensus 102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181 (549)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred EEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEeccc
Confidence 999999998752 45678889999999999998444555 57888888888887 4466788899998
Q ss_pred CccCCCCchhh-hcCccccEEeccCCccce
Q 043038 150 NKFHGPLPTRF-CDLAILQILDIADNNLSG 178 (271)
Q Consensus 150 n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~ 178 (271)
|.++ ..|..+ ..+++|+.|++++|++++
T Consensus 182 n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 182 SESA-FLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp SBST-THHHHHHHSTTTBSEEEEESCBCTT
T ss_pred Cccc-ccchhhHhhcccccEEEccCCcccc
Confidence 8886 445443 568899999999999875
No 52
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=1.9e-23 Score=187.86 Aligned_cols=232 Identities=18% Similarity=0.184 Sum_probs=175.1
Q ss_pred CccCCCcccEEECcCCCCCCCccccC--CCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCC
Q 043038 3 NLTKFTQLLFRSLDSNNMSGLLPLIS--SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSD 80 (271)
Q Consensus 3 ~~~~~~~L~~L~l~~n~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 80 (271)
.++.+++|+.|++++|.+.+ +|..+ .+|+.|++++|.+.. +|.. .++.|++|++++|.+....+. ..+
T Consensus 277 ~~~~l~~L~~L~l~~~~l~~-l~~~~~~~~L~~L~l~~n~~~~-l~~~------~l~~L~~L~l~~n~~~~~~~~--~~~ 346 (570)
T 2z63_A 277 LFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQ-FPTL------KLKSLKRLTFTSNKGGNAFSE--VDL 346 (570)
T ss_dssp TTGGGTTCSEEEEESCEECS-CCBCCSCCCCSEEEEESCBCSS-CCBC------BCSSCCEEEEESCBSCCBCCC--CBC
T ss_pred hhcCcCcccEEEecCccchh-hhhhhccCCccEEeeccCcccc-cCcc------cccccCEEeCcCCcccccccc--ccC
Confidence 35667888889998888774 44332 178888888888873 4431 367888888888887644433 567
Q ss_pred CCCCEEEccCCcccccC--CcccccCCCccEEEccCCccccccCccccCCCCccEEec--------------CCCCcccE
Q 043038 81 QNLKILKLSNNKFIGNL--PNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV--------------ERFSRMVV 144 (271)
Q Consensus 81 ~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l--------------~~~~~L~~ 144 (271)
++|++|++++|.+++.. +..+..+++|+.+++++|.+.+ .+..+..+++|+.|++ ..+++|++
T Consensus 347 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 425 (570)
T 2z63_A 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425 (570)
T ss_dssp TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred CCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-ccccccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence 88888888888877433 5667778888888888888773 4444777888887776 34567888
Q ss_pred EEeccCccCCCCchhhhcCccccEEeccCCccc-eecCcccccccCCcc----ccccccccccccccccchhhhhhhhce
Q 043038 145 LNLRSNKFHGPLPTRFCDLAILQILDIADNNLS-GAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKAS 219 (271)
Q Consensus 145 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (271)
|++++|.+++..|..+..+++|+.|++++|.++ +.+|..+..++.|+. .|.+.+..
T Consensus 426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~------------------- 486 (570)
T 2z63_A 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS------------------- 486 (570)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-------------------
T ss_pred EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCC-------------------
Confidence 889999888777888888889999999999886 467888888877776 44454431
Q ss_pred eccccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038 220 VVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271 (271)
Q Consensus 220 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 271 (271)
+..+..+++|+.|++++|.+.+..|..|..+++|+.|++++|.++
T Consensus 487 -------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 487 -------PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp -------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred -------hhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 222346789999999999998877788999999999999999874
No 53
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=4.4e-23 Score=168.89 Aligned_cols=207 Identities=20% Similarity=0.194 Sum_probs=163.2
Q ss_pred ccCCCcccEEECcCCCCCCCccc-cCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCC
Q 043038 4 LTKFTQLLFRSLDSNNMSGLLPL-ISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQN 82 (271)
Q Consensus 4 ~~~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 82 (271)
+.++++|+.|++++|.+.....- .+++|++|++++|.+++ ++ .+..+++|++|++++|.+++..+..|..+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~-~~-----~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 110 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-IS-----ALKELTNLTYLILTGNQLQSLPNGVFDKLTN 110 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC-CG-----GGTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC-ch-----hhcCCCCCCEEECCCCccCccChhHhcCCcC
Confidence 45678899999999988754322 26899999999999876 32 3445899999999999999666777889999
Q ss_pred CCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhc
Q 043038 83 LKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCD 162 (271)
Q Consensus 83 L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 162 (271)
|++|++++|++++..+..+..+++|+.|++++|.+.+..+..+..++ +|+.|++++|.+++..+..+..
T Consensus 111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----------~L~~L~l~~n~l~~~~~~~~~~ 179 (272)
T 3rfs_A 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT-----------NLTELDLSYNQLQSLPEGVFDK 179 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----------TCCEEECCSSCCCCCCTTTTTT
T ss_pred CCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc-----------cCCEEECCCCCcCccCHHHhcC
Confidence 99999999999966667788899999999999998854444455555 4556669999998777777888
Q ss_pred CccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhh
Q 043038 163 LAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMV 238 (271)
Q Consensus 163 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 238 (271)
+++|+.|++++|++++..+..+..++.|+. .|.+.+ .+++++.
T Consensus 180 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---------------------------------~~~~l~~ 226 (272)
T 3rfs_A 180 LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---------------------------------TCPGIRY 226 (272)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC---------------------------------CTTTTHH
T ss_pred CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc---------------------------------cCcHHHH
Confidence 999999999999998766666777777766 444443 3567888
Q ss_pred hhhcCCcccccccHhhhccCCC
Q 043038 239 TIVSRNDLLKNVPLEVRNLKAT 260 (271)
Q Consensus 239 L~L~~n~l~~~~~~~l~~l~~L 260 (271)
++++.|.+.+.+|.++..++..
T Consensus 227 l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 227 LSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp HHHHHHHTGGGBBCTTSCBCGG
T ss_pred HHHHHHhCCCcccCcccccCCC
Confidence 9999999999899888776553
No 54
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=1e-22 Score=178.39 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=28.7
Q ss_pred HHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038 231 EILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271 (271)
Q Consensus 231 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 271 (271)
+.+++|+.|++++|++.+ ++ +..+++|+.|++++|+|+
T Consensus 315 ~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 315 SQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp TTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCC
T ss_pred hhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCC
Confidence 455777888888888776 33 778888888888888774
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=8e-23 Score=179.06 Aligned_cols=188 Identities=22% Similarity=0.228 Sum_probs=157.4
Q ss_pred CcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCC
Q 043038 8 TQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLK 84 (271)
Q Consensus 8 ~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 84 (271)
++++.|++++|.+.+..|.. +++|++|++++|.+++..+..+. ++++|++|++++|.++...+..|..+++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 150 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN----GLASLNTLELFDNWLTVIPSGAFEYLSKLR 150 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT----TCTTCCEEECCSSCCSBCCTTTSSSCTTCC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhcc----CcccCCEEECCCCcCCccChhhhcccCCCC
Confidence 57999999999999876665 46899999999999875444444 499999999999999966667789999999
Q ss_pred EEEccCCcccccCCcccccCCCccEEEccCCccccccC-ccccCCCCccEEec-----------CCCCcccEEEeccCcc
Q 043038 85 ILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIP-ATLKNCTALESLDV-----------ERFSRMVVLNLRSNKF 152 (271)
Q Consensus 85 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~-~~~~~l~~L~~L~l-----------~~~~~L~~L~l~~n~l 152 (271)
+|++++|.++...+..|..+++|+.|++++|...+.++ ..+..+++|+.|++ ..+++|+.|++++|.+
T Consensus 151 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCC
T ss_pred EEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcC
Confidence 99999999996666688899999999999854433444 45778999999988 4467899999999999
Q ss_pred CCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccc
Q 043038 153 HGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRS 199 (271)
Q Consensus 153 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~ 199 (271)
++..|..|..+++|+.|++++|++++..+..+..+++|+. .|.+.+.
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 281 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc
Confidence 9888899999999999999999999888888888888877 5666653
No 56
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=1.9e-22 Score=177.28 Aligned_cols=161 Identities=24% Similarity=0.334 Sum_probs=84.3
Q ss_pred ccCCCcccEEECcCCCCCCCcccc-CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCC--------
Q 043038 4 LTKFTQLLFRSLDSNNMSGLLPLI-SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELP-------- 74 (271)
Q Consensus 4 ~~~~~~L~~L~l~~n~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-------- 74 (271)
++++++|++|++++|.+.+..+-. +++|++|++++|.+++. +. +.++++|++|++++|.++. ++
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~-~~-----~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L 158 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI-DP-----LKNLTNLNRLELSSNTISD-ISALSGLTSL 158 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-GG-----GTTCTTCSEEEEEEEEECC-CGGGTTCTTC
T ss_pred hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCC-hH-----HcCCCCCCEEECCCCccCC-ChhhccCCcc
Confidence 556667777777777666554411 45666666666666542 21 2335555566555555542 11
Q ss_pred ------------ccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec------
Q 043038 75 ------------DCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV------ 136 (271)
Q Consensus 75 ------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l------ 136 (271)
..+..+++|++|++++|.++. .+ .+..+++|+.+++++|.+.+..| ++.+++|+.|++
T Consensus 159 ~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 234 (466)
T 1o6v_A 159 QQLSFGNQVTDLKPLANLTTLERLDISSNKVSD-IS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 234 (466)
T ss_dssp SEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred cEeecCCcccCchhhccCCCCCEEECcCCcCCC-Ch-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc
Confidence 124455566666666666552 22 35555666666666666553322 444555555554
Q ss_pred -----CCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccc
Q 043038 137 -----ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177 (271)
Q Consensus 137 -----~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 177 (271)
..+++|+.|++++|.+++..+ +..+++|+.|++++|.++
T Consensus 235 ~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 278 (466)
T 1o6v_A 235 DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 278 (466)
T ss_dssp CCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC
T ss_pred cchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC
Confidence 223445555555555543222 444455555555555544
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=1.4e-22 Score=176.84 Aligned_cols=188 Identities=23% Similarity=0.223 Sum_probs=155.7
Q ss_pred CcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCC
Q 043038 8 TQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLK 84 (271)
Q Consensus 8 ~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 84 (271)
+.++.|++++|.+....+.. +++|++|++++|.++...+..+ .++++|++|++++|.++...+..|..+++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 139 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAF----NGLANLNTLELFDNRLTTIPNGAFVYLSKLK 139 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGG----TTCSSCCEEECCSSCCSSCCTTTSCSCSSCC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhc----cCCccCCEEECCCCcCCeeCHhHhhccccCc
Confidence 56899999999998776655 4689999999999886444444 4589999999999999965666789999999
Q ss_pred EEEccCCcccccCCcccccCCCccEEEccCCccccccC-ccccCCCCccEEec-----------CCCCcccEEEeccCcc
Q 043038 85 ILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIP-ATLKNCTALESLDV-----------ERFSRMVVLNLRSNKF 152 (271)
Q Consensus 85 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~-~~~~~l~~L~~L~l-----------~~~~~L~~L~l~~n~l 152 (271)
+|++++|.++...+..|..+++|+.|++++|...+.++ ..+..+++|+.|++ ..+++|+.|++++|.+
T Consensus 140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCC
T ss_pred eeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCcc
Confidence 99999999986666788899999999999855433444 46788999999988 4467899999999999
Q ss_pred CCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccc
Q 043038 153 HGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRS 199 (271)
Q Consensus 153 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~ 199 (271)
++..|..|..+++|+.|++++|++++..+..+..+++|+. .|.+.+.
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 270 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc
Confidence 9877889999999999999999999888888888888877 5666654
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=6e-22 Score=164.72 Aligned_cols=226 Identities=23% Similarity=0.256 Sum_probs=166.2
Q ss_pred ccCCCcccEEECcCCCCCCCc--ccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCC-ccc
Q 043038 4 LTKFTQLLFRSLDSNNMSGLL--PLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELP-DCW 77 (271)
Q Consensus 4 ~~~~~~L~~L~l~~n~~~~~~--~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~ 77 (271)
|+++++|++|++++|.+.... +.. +++|++|++++|.++. +|. .+..+++|++|++++|.++...+ ..+
T Consensus 48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~ 122 (306)
T 2z66_A 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSS----NFLGLEQLEHLDFQHSNLKQMSEFSVF 122 (306)
T ss_dssp TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEE----EEETCTTCCEEECTTSEEESSTTTTTT
T ss_pred hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-Chh----hcCCCCCCCEEECCCCcccccccchhh
Confidence 789999999999999987432 222 5799999999999875 443 34459999999999999985443 578
Q ss_pred cCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCcccc-ccCccccCCCCccEEec-------------CCCCccc
Q 043038 78 MSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFG-TIPATLKNCTALESLDV-------------ERFSRMV 143 (271)
Q Consensus 78 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~-~~~~~~~~l~~L~~L~l-------------~~~~~L~ 143 (271)
..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+ ..|..+..+++|+.|++ ..+++|+
T Consensus 123 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 202 (306)
T 2z66_A 123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202 (306)
T ss_dssp TTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCC
Confidence 899999999999999987788889999999999999999985 47788888888888876 3456777
Q ss_pred EEEeccCccCCCCchhhhcCccccEEeccCCccceecCccccccc-CCcc----ccccccccccccccccchhhhhhhhc
Q 043038 144 VLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVT-GMVT----TNSFSRSAQQHLHVPLDVDVILMEKA 218 (271)
Q Consensus 144 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~ 218 (271)
.|++++|.+++..+..+..+++|+.|++++|.+++..|..+..++ .|+. .|.+.+.
T Consensus 203 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~------------------- 263 (306)
T 2z66_A 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT------------------- 263 (306)
T ss_dssp EEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS-------------------
T ss_pred EEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc-------------------
Confidence 888888877765566677777788888888877766666666553 4544 4444431
Q ss_pred eeccccchhhHHHHHhhHhhhhhcCCcccccccHhhhccC
Q 043038 219 SVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLK 258 (271)
Q Consensus 219 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 258 (271)
-....+...+...+.+.+..+.+....|..+++.+
T Consensus 264 -----c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~ 298 (306)
T 2z66_A 264 -----CEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP 298 (306)
T ss_dssp -----GGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCB
T ss_pred -----cChHHHHHHHHhhhhhhccccccccCCchhhCCce
Confidence 01111223344455555556666556677766544
No 59
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=3.6e-22 Score=174.93 Aligned_cols=248 Identities=19% Similarity=0.163 Sum_probs=160.7
Q ss_pred CCCccCCCcccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCC
Q 043038 1 MPNLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSD 80 (271)
Q Consensus 1 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 80 (271)
+|+++++++|++|++++|.+.+..-..+++|++|++++|.+++ ++ +.++++|++|++++|.+++ ++ +..+
T Consensus 57 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~-~~------~~~l~~L~~L~L~~N~l~~-l~--~~~l 126 (457)
T 3bz5_A 57 MTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTN-LD------VTPLTKLTYLNCDTNKLTK-LD--VSQN 126 (457)
T ss_dssp CTTGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-CC------CTTCTTCCEEECCSSCCSC-CC--CTTC
T ss_pred ChhhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCce-ee------cCCCCcCCEEECCCCcCCe-ec--CCCC
Confidence 3678889999999999999987533336789999999999886 33 4458899999999999884 44 7788
Q ss_pred CCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec----------CCCCcccEEEeccC
Q 043038 81 QNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV----------ERFSRMVVLNLRSN 150 (271)
Q Consensus 81 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l----------~~~~~L~~L~l~~n 150 (271)
++|++|++++|++++. + +..+++|+.+++++|...+.+ .+..+++|+.|++ ..+++|+.|++++|
T Consensus 127 ~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N 201 (457)
T 3bz5_A 127 PLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTN 201 (457)
T ss_dssp TTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSS
T ss_pred CcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceeccccCCCCCEEECcCC
Confidence 8999999999988853 2 666777777777777544333 3556666666665 34556777777777
Q ss_pred ccCCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchh--hhhhhhceec---
Q 043038 151 KFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVD--VILMEKASVV--- 221 (271)
Q Consensus 151 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~--~~~~~~~~~~--- 221 (271)
.+++. .+..+++|+.|++++|++++ +| +..++.|+. .|.+.+.+...++...... ...+..++..
T Consensus 202 ~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~ 275 (457)
T 3bz5_A 202 NITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNT 275 (457)
T ss_dssp CCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCT
T ss_pred cCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCc
Confidence 77643 25666677777777777764 44 445555554 4555543221111100000 0000111111
Q ss_pred cccchhhHHHHHhhHhhhhhcCCcccccccH--------hhhccCCCCEEEccCCCCC
Q 043038 222 SREEVVEYNEILNLVMVTIVSRNDLLKNVPL--------EVRNLKATQSLNFSHNTFT 271 (271)
Q Consensus 222 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--------~l~~l~~L~~L~l~~n~i~ 271 (271)
..+.++ .+.+++|+.|++++|...+.+|. .+..+++|++|++++|+|+
T Consensus 276 ~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~ 331 (457)
T 3bz5_A 276 QLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELT 331 (457)
T ss_dssp TCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCS
T ss_pred cCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccc
Confidence 111122 24678899999999987665554 2567788999999998875
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=6.8e-23 Score=180.99 Aligned_cols=211 Identities=17% Similarity=0.131 Sum_probs=156.3
Q ss_pred CCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCC
Q 043038 6 KFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQN 82 (271)
Q Consensus 6 ~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 82 (271)
.+++|+.|++++|.+.+..|.. +++|++|++++|.+++..| +..+++|++|++++|.++ .++ ..++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~-~l~----~~~~ 100 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQ-ELL----VGPS 100 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE------CTTCTTCCEEECCSSEEE-EEE----ECTT
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc------cccCCCCCEEEecCCcCC-CCC----CCCC
Confidence 4458999999999998877655 4689999999999876444 445889999999999887 333 2378
Q ss_pred CCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhh-
Q 043038 83 LKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFC- 161 (271)
Q Consensus 83 L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~- 161 (271)
|++|++++|.+++..+. .+++|+.|++++|.+.+..|..+..+++ |+.|++++|.+++..|..+.
T Consensus 101 L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~-----------L~~L~Ls~N~l~~~~~~~l~~ 166 (487)
T 3oja_A 101 IETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSR-----------VQYLDLKLNEIDTVNFAELAA 166 (487)
T ss_dssp CCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSS-----------EEEEECTTSCCCEEEGGGGGG
T ss_pred cCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCC-----------CCEEECCCCCCCCcChHHHhh
Confidence 99999999998854433 3578999999999988666666665554 44566888888876666665
Q ss_pred cCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHh
Q 043038 162 DLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVM 237 (271)
Q Consensus 162 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 237 (271)
.+++|+.|++++|.+++. +. ...++.|+. .|.+.+.+. .+..+++|+
T Consensus 167 ~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~---------------------------~~~~l~~L~ 217 (487)
T 3oja_A 167 SSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP---------------------------EFQSAAGVT 217 (487)
T ss_dssp GTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG---------------------------GGGGGTTCS
T ss_pred hCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCCCH---------------------------hHcCCCCcc
Confidence 678888888888888754 22 223555554 455544211 124678899
Q ss_pred hhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038 238 VTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271 (271)
Q Consensus 238 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 271 (271)
.|++++|.+.+ +|..+..+++|+.|++++|.++
T Consensus 218 ~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 218 WISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred EEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 99999999975 8888999999999999999864
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=7.1e-23 Score=171.30 Aligned_cols=211 Identities=18% Similarity=0.138 Sum_probs=138.4
Q ss_pred CCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCC
Q 043038 6 KFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQN 82 (271)
Q Consensus 6 ~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 82 (271)
.+++|++|++++|.+.+..|.. +++|++|++++|.+++..+ +..+++|++|++++|.++ .++ ..++
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~l~~L~~L~Ls~n~l~-~l~----~~~~ 100 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQ-ELL----VGPS 100 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE------ETTCTTCCEEECCSSEEE-EEE----ECTT
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh------hhhcCCCCEEECcCCccc-ccc----CCCC
Confidence 3456777777777777655543 4577777777777765332 334777777777777776 222 2367
Q ss_pred CCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhh-
Q 043038 83 LKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFC- 161 (271)
Q Consensus 83 L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~- 161 (271)
|++|++++|.+++..+. .+++|+.+++++|.+.+..+..+..++ +|++|++++|.+++..+..+.
T Consensus 101 L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~-----------~L~~L~Ls~N~l~~~~~~~~~~ 166 (317)
T 3o53_A 101 IETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRS-----------RVQYLDLKLNEIDTVNFAELAA 166 (317)
T ss_dssp CCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGS-----------SEEEEECTTSCCCEEEGGGGGG
T ss_pred cCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccC-----------CCCEEECCCCCCCcccHHHHhh
Confidence 77777777777643322 246677777777777644444444444 556666888888765555553
Q ss_pred cCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHh
Q 043038 162 DLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVM 237 (271)
Q Consensus 162 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 237 (271)
.+++|+.|++++|.+++. +.. ..++.|+. .|.+.+... .+..+++|+
T Consensus 167 ~l~~L~~L~L~~N~l~~~-~~~-~~l~~L~~L~Ls~N~l~~l~~---------------------------~~~~l~~L~ 217 (317)
T 3o53_A 167 SSDTLEHLNLQYNFIYDV-KGQ-VVFAKLKTLDLSSNKLAFMGP---------------------------EFQSAAGVT 217 (317)
T ss_dssp GTTTCCEEECTTSCCCEE-ECC-CCCTTCCEEECCSSCCCEECG---------------------------GGGGGTTCS
T ss_pred ccCcCCEEECCCCcCccc-ccc-cccccCCEEECCCCcCCcchh---------------------------hhcccCccc
Confidence 678888888888888743 322 22445544 444444211 123578889
Q ss_pred hhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038 238 VTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271 (271)
Q Consensus 238 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 271 (271)
.|++++|.+. .+|..+..+++|+.|++++|.++
T Consensus 218 ~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 218 WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp EEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred EEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 9999999987 47888889999999999999874
No 62
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=2.3e-22 Score=176.06 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=20.1
Q ss_pred HhhHhhhhhcCCcccc--cccHhhhcc-------------CCCCEEEccCCCCC
Q 043038 233 LNLVMVTIVSRNDLLK--NVPLEVRNL-------------KATQSLNFSHNTFT 271 (271)
Q Consensus 233 ~~~L~~L~L~~n~l~~--~~~~~l~~l-------------~~L~~L~l~~n~i~ 271 (271)
+++|+.|++++|.+.+ .+|.++..+ ++|+.|++++|.++
T Consensus 356 l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 356 PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp CTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred hhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 5778888888888877 678888777 78888888888764
No 63
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=2e-22 Score=167.99 Aligned_cols=218 Identities=17% Similarity=0.151 Sum_probs=135.3
Q ss_pred cccEEECcCCCCCCCc-c---cc--CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCC----cccc
Q 043038 9 QLLFRSLDSNNMSGLL-P---LI--SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELP----DCWM 78 (271)
Q Consensus 9 ~L~~L~l~~n~~~~~~-~---~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~ 78 (271)
.++.+.+.++.+.... . .. +++|++|++++|.+++..|..+.. ..+++|++|++++|.+++..+ ..+.
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLE--ATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSS--CCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhh--ccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 4566677666654211 1 11 346778888888777655544311 336777788888887774333 3344
Q ss_pred CCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccc--cCc--cccCCCCccEEecCCCCcccEEEeccCccCC
Q 043038 79 SDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGT--IPA--TLKNCTALESLDVERFSRMVVLNLRSNKFHG 154 (271)
Q Consensus 79 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~--~~~--~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~ 154 (271)
.+++|++|++++|.+++..+..+..+++|+.|++++|.+.+. ++. .+..++ +|++|++++|.++
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~-----------~L~~L~Ls~N~l~- 210 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP-----------AIQNLALRNTGME- 210 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC-----------CCCSCBCCSSCCC-
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCC-----------CCCEEECCCCCCC-
Confidence 577788888888877766666777777788888888776532 111 112333 3444446777765
Q ss_pred CCch----hhhcCccccEEeccCCccceecCcccccc---cCCcc----ccccccccccccccccchhhhhhhhceeccc
Q 043038 155 PLPT----RFCDLAILQILDIADNNLSGAIPNYINNV---TGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSR 223 (271)
Q Consensus 155 ~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (271)
.++. .+..+++|++|++++|++++..|..+..+ +.|+. .|.+... |..
T Consensus 211 ~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-----p~~---------------- 269 (310)
T 4glp_A 211 TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-----PKG---------------- 269 (310)
T ss_dssp CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-----CSC----------------
T ss_pred chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-----hhh----------------
Confidence 2333 24556677777777777765555555544 34444 3444431 210
Q ss_pred cchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038 224 EEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271 (271)
Q Consensus 224 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 271 (271)
..++|+.|++++|++.+ +|. +..+++|+.|++++|.|+
T Consensus 270 --------~~~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 270 --------LPAKLRVLDLSSNRLNR-APQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp --------CCSCCSCEECCSCCCCS-CCC-TTSCCCCSCEECSSTTTS
T ss_pred --------hcCCCCEEECCCCcCCC-Cch-hhhCCCccEEECcCCCCC
Confidence 12568999999999986 444 688999999999999985
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=1.4e-22 Score=171.99 Aligned_cols=239 Identities=16% Similarity=0.094 Sum_probs=152.1
Q ss_pred CcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCC
Q 043038 8 TQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLK 84 (271)
Q Consensus 8 ~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 84 (271)
+++++|++++|.+.+..+.. +++|++|++++|.+++..+..+. ++++|++|++++|.++...+..|..+++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS----SLGSLEHLDLSYNYLSNLSSSWFKPLSSLT 127 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT----TCTTCCEEECCSSCCSSCCHHHHTTCTTCS
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcC----CCCCCCEEECCCCcCCcCCHhHhCCCccCC
Confidence 47888899988888665533 46888899998888764444443 488889999998888844444578888899
Q ss_pred EEEccCCcccccCC-cccccCCCccEEEccCCc-cccccCccccCCCCccEEec-------------CCCCcccEEEecc
Q 043038 85 ILKLSNNKFIGNLP-NSFGSLAFLVWLDLGKNR-LFGTIPATLKNCTALESLDV-------------ERFSRMVVLNLRS 149 (271)
Q Consensus 85 ~L~l~~n~~~~~~~-~~~~~l~~L~~l~l~~n~-l~~~~~~~~~~l~~L~~L~l-------------~~~~~L~~L~l~~ 149 (271)
+|++++|+++...+ ..+..+++|+.+++++|. +.+..+..+..+++|+.|++ ..+++|++|++++
T Consensus 128 ~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 207 (353)
T 2z80_A 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207 (353)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred EEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCC
Confidence 99999888884333 367788888899988884 55444567778888888877 4457888999999
Q ss_pred CccCCCCchhhhcCccccEEeccCCccceecCccccc---ccCCcc----ccccccccccccccccchhhhhhhhceec-
Q 043038 150 NKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINN---VTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVV- 221 (271)
Q Consensus 150 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~- 221 (271)
|.++...+..+..+++|+.|++++|.+++..+..+.. ...+.. .+.+.+.....+|..+ .....+..+++.
T Consensus 208 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l-~~l~~L~~L~Ls~ 286 (353)
T 2z80_A 208 KQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL-NQISGLLELEFSR 286 (353)
T ss_dssp SCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHH-HTCTTCCEEECCS
T ss_pred CccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHH-hcccCCCEEECCC
Confidence 9986433333456788999999999887544333221 111111 2222221111111100 001111111111
Q ss_pred -cccchhhH-HHHHhhHhhhhhcCCccccccc
Q 043038 222 -SREEVVEY-NEILNLVMVTIVSRNDLLKNVP 251 (271)
Q Consensus 222 -~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~ 251 (271)
....++.. ++.+++|+.|++++|.+.++.|
T Consensus 287 N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 287 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 11223322 3678899999999999987654
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.87 E-value=4.5e-23 Score=172.52 Aligned_cols=204 Identities=23% Similarity=0.215 Sum_probs=154.3
Q ss_pred CccCCCcccEEECcCCCCCCCcccc-CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCC
Q 043038 3 NLTKFTQLLFRSLDSNNMSGLLPLI-SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQ 81 (271)
Q Consensus 3 ~~~~~~~L~~L~l~~n~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 81 (271)
.|+++++|++|++++|.+.+..+-. +++|++|++++|.+++ ++ . .++|++|++++|.++...+. .++
T Consensus 53 ~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~-l~----~----~~~L~~L~l~~n~l~~~~~~---~~~ 120 (317)
T 3o53_A 53 DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE-LL----V----GPSIETLHAANNNISRVSCS---RGQ 120 (317)
T ss_dssp HHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE-EE----E----CTTCCEEECCSSCCSEEEEC---CCS
T ss_pred HhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc-cc----C----CCCcCEEECCCCccCCcCcc---ccC
Confidence 3678999999999999998765522 6799999999999876 22 2 57899999999998844333 367
Q ss_pred CCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCcccc-CCCCccEEec-----------CCCCcccEEEecc
Q 043038 82 NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLK-NCTALESLDV-----------ERFSRMVVLNLRS 149 (271)
Q Consensus 82 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~-~l~~L~~L~l-----------~~~~~L~~L~l~~ 149 (271)
+|++|++++|++++..+..+..+++|+.|++++|.+.+..+..+. .+++|+.|++ ..+++|+.|++++
T Consensus 121 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~ 200 (317)
T 3o53_A 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSS 200 (317)
T ss_dssp SCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCS
T ss_pred CCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCC
Confidence 899999999999866677788889999999999998866566554 6788888887 3367888899999
Q ss_pred CccCCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceeccccc
Q 043038 150 NKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREE 225 (271)
Q Consensus 150 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (271)
|.+++ +|..+..+++|+.|++++|+++ .+|..+..++.|+. .|.+.. ..
T Consensus 201 N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~-------------------------~~ 253 (317)
T 3o53_A 201 NKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC-------------------------GT 253 (317)
T ss_dssp SCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBH-------------------------HH
T ss_pred CcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccC-------------------------cC
Confidence 99874 5556888889999999999888 56777776666655 333331 12
Q ss_pred hhhHHHHHhhHhhhhhcCCc
Q 043038 226 VVEYNEILNLVMVTIVSRND 245 (271)
Q Consensus 226 ~~~~~~~~~~L~~L~L~~n~ 245 (271)
.+.++..+++|+.++++++.
T Consensus 254 ~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 254 LRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp HHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhccccceEEECCCch
Confidence 34455667778888877443
No 66
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=5.4e-22 Score=162.42 Aligned_cols=198 Identities=18% Similarity=0.166 Sum_probs=149.5
Q ss_pred CcccEEECcCCCCCCCcccc-CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEE
Q 043038 8 TQLLFRSLDSNNMSGLLPLI-SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKIL 86 (271)
Q Consensus 8 ~~L~~L~l~~n~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 86 (271)
.++..+++.++.+.+..... +++++.|++++|.++. ++. +..+++|++|++++|.+++ . ..+..+++|++|
T Consensus 19 ~~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~-----l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L 90 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKS-VQG-----IQYLPNVRYLALGGNKLHD-I-SALKELTNLTYL 90 (272)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCC-CTT-----GGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEE
T ss_pred HHHHHHHhcCcccccccccccccceeeeeeCCCCccc-ccc-----cccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEE
Confidence 34444566666665544332 6799999999999875 332 3448999999999999984 3 478899999999
Q ss_pred EccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccc
Q 043038 87 KLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAIL 166 (271)
Q Consensus 87 ~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 166 (271)
++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++ |++|++++|.+++..+..+..+++|
T Consensus 91 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-----------L~~L~L~~n~l~~~~~~~~~~l~~L 159 (272)
T 3rfs_A 91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN-----------LTYLNLAHNQLQSLPKGVFDKLTNL 159 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT-----------CCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCC-----------CCEEECCCCccCccCHHHhccCccC
Confidence 99999999766777889999999999999998554444555554 5566699999987777778899999
Q ss_pred cEEeccCCccceecCcccccccCCccccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCcc
Q 043038 167 QILDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDL 246 (271)
Q Consensus 167 ~~L~l~~n~l~~~~~~~~~~~~~L~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l 246 (271)
+.|++++|++++..+..+.. +++|+.|++++|.+
T Consensus 160 ~~L~l~~n~l~~~~~~~~~~----------------------------------------------l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 160 TELDLSYNQLQSLPEGVFDK----------------------------------------------LTQLKDLRLYQNQL 193 (272)
T ss_dssp CEEECCSSCCCCCCTTTTTT----------------------------------------------CTTCCEEECCSSCC
T ss_pred CEEECCCCCcCccCHHHhcC----------------------------------------------CccCCEEECCCCcC
Confidence 99999999998544443343 44566677777877
Q ss_pred cccccHhhhccCCCCEEEccCCCC
Q 043038 247 LKNVPLEVRNLKATQSLNFSHNTF 270 (271)
Q Consensus 247 ~~~~~~~l~~l~~L~~L~l~~n~i 270 (271)
.+..+..+..+++|+.|++++|.+
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CccCHHHHhCCcCCCEEEccCCCc
Confidence 766666677788888888877765
No 67
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=4.1e-21 Score=155.32 Aligned_cols=163 Identities=20% Similarity=0.176 Sum_probs=127.5
Q ss_pred CcccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEE
Q 043038 8 TQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILK 87 (271)
Q Consensus 8 ~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 87 (271)
...+.++++++.+...++...++++.|++++|.+++..+..+. ++++|++|++++|.+++..+..|..+++|++|+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFR----GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTT----TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhc----CcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 3467899999988865544456899999999999875554444 489999999999999877777788999999999
Q ss_pred ccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCcccc
Q 043038 88 LSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQ 167 (271)
Q Consensus 88 l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 167 (271)
+++|.++...+..|..+++|+.|++++|.+++..+..+..++ +|+.|++++|.+++..+..+..+++|+
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----------~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 158 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT-----------KLKELRLNTNQLQSIPAGAFDKLTNLQ 158 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----------TCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCC-----------cccEEECcCCcCCccCHHHcCcCcCCC
Confidence 999999866667788899999999999998844333445444 455666899999866666788899999
Q ss_pred EEeccCCccceecCcccc
Q 043038 168 ILDIADNNLSGAIPNYIN 185 (271)
Q Consensus 168 ~L~l~~n~l~~~~~~~~~ 185 (271)
.|++++|++++..+..+.
T Consensus 159 ~L~L~~N~l~~~~~~~~~ 176 (251)
T 3m19_A 159 TLSLSTNQLQSVPHGAFD 176 (251)
T ss_dssp EEECCSSCCSCCCTTTTT
T ss_pred EEECCCCcCCccCHHHHh
Confidence 999999998854443333
No 68
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=1.2e-23 Score=184.45 Aligned_cols=262 Identities=19% Similarity=0.176 Sum_probs=178.3
Q ss_pred cccEEECcCCCCCCC----cccc---CCCccEEEccCCccccccchhhhhhcc-CCCcccEEEccCcccCCC----CCcc
Q 043038 9 QLLFRSLDSNNMSGL----LPLI---SSNLVYLGLSDNSFLGSISHFLCDKIN-ETKRLEALKLNDNYLQGE----LPDC 76 (271)
Q Consensus 9 ~L~~L~l~~n~~~~~----~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~----~~~~ 76 (271)
+|++|++++|.+... ++.. +++|++|++++|.+++..+..+...+. ..++|++|++++|.++.. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 699999999998842 3433 468999999999987655555555432 356799999999998753 3556
Q ss_pred ccCCCCCCEEEccCCcccccCCcccc-----cCCCccEEEccCCccccc----cCccccCCCCccEEec-----------
Q 043038 77 WMSDQNLKILKLSNNKFIGNLPNSFG-----SLAFLVWLDLGKNRLFGT----IPATLKNCTALESLDV----------- 136 (271)
Q Consensus 77 ~~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~l~l~~n~l~~~----~~~~~~~l~~L~~L~l----------- 136 (271)
+..+++|++|++++|.++...+..+. ..++|+.|++++|.+.+. ++..+..+++|+.|++
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 67788999999999988744333332 256899999999988753 4666777888999988
Q ss_pred -------CCCCcccEEEeccCccCCC----CchhhhcCccccEEeccCCccceecCcccccc-----cCCcc----cccc
Q 043038 137 -------ERFSRMVVLNLRSNKFHGP----LPTRFCDLAILQILDIADNNLSGAIPNYINNV-----TGMVT----TNSF 196 (271)
Q Consensus 137 -------~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-----~~L~~----~n~~ 196 (271)
..+++|++|++++|.+++. ++..+..+++|+.|++++|.+.+..+..+... +.|+. .|.+
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence 1367899999999998743 56677778999999999998864433333221 34444 4555
Q ss_pred ccccccccccccchhhhhhhhceecc---ccchhhHH-HH----HhhHhhhhhcCCcccc----cccHhhhccCCCCEEE
Q 043038 197 SRSAQQHLHVPLDVDVILMEKASVVS---REEVVEYN-EI----LNLVMVTIVSRNDLLK----NVPLEVRNLKATQSLN 264 (271)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~----~~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~ 264 (271)
.+.+...++..+. ....+..+++.. .......+ .. .++|+.|++++|.+.+ .+|..+..+++|++|+
T Consensus 326 ~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~ 404 (461)
T 1z7x_W 326 TAACCSHFSSVLA-QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 404 (461)
T ss_dssp BGGGHHHHHHHHH-HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEE
T ss_pred chHHHHHHHHHHh-hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEE
Confidence 5432222221110 111222222221 11111222 22 4589999999999976 6888999999999999
Q ss_pred ccCCCCC
Q 043038 265 FSHNTFT 271 (271)
Q Consensus 265 l~~n~i~ 271 (271)
+++|+|+
T Consensus 405 l~~N~i~ 411 (461)
T 1z7x_W 405 LSNNCLG 411 (461)
T ss_dssp CCSSSCC
T ss_pred CCCCCCC
Confidence 9999875
No 69
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=5.6e-23 Score=176.45 Aligned_cols=235 Identities=17% Similarity=0.148 Sum_probs=159.2
Q ss_pred ccCCCcccEEECcCCCCCCCccc-------cCCCccEEEccCCccc---cccchh---hhhhccCCCcccEEEccCcccC
Q 043038 4 LTKFTQLLFRSLDSNNMSGLLPL-------ISSNLVYLGLSDNSFL---GSISHF---LCDKINETKRLEALKLNDNYLQ 70 (271)
Q Consensus 4 ~~~~~~L~~L~l~~n~~~~~~~~-------~~~~L~~L~l~~n~~~---~~~~~~---~~~~~~~~~~L~~L~l~~n~l~ 70 (271)
+.++++|+.|++++|.+....+. .+++|++|++++|.+. +.+|.. +...+..+++|++|++++|.++
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 45678888999999888765332 2568899999886543 333432 2334566888999999999888
Q ss_pred C----CCCccccCCCCCCEEEccCCcccccCCcc----cccC---------CCccEEEccCCcccc-ccC---ccccCCC
Q 043038 71 G----ELPDCWMSDQNLKILKLSNNKFIGNLPNS----FGSL---------AFLVWLDLGKNRLFG-TIP---ATLKNCT 129 (271)
Q Consensus 71 ~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~----~~~l---------~~L~~l~l~~n~l~~-~~~---~~~~~l~ 129 (271)
. .++..+..+++|++|++++|.++...+.. +..+ ++|+.|++++|.+.+ .++ ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 5 35667788889999999998886333322 3333 788999999988762 333 2333444
Q ss_pred CccEEecCCCCcccEEEeccCccCC-----CCchhhhcCccccEEeccCCccc----eecCcccccccCCcc----cccc
Q 043038 130 ALESLDVERFSRMVVLNLRSNKFHG-----PLPTRFCDLAILQILDIADNNLS----GAIPNYINNVTGMVT----TNSF 196 (271)
Q Consensus 130 ~L~~L~l~~~~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~~~~L~~----~n~~ 196 (271)
+|+.|++++|.++. ..+..+..+++|+.|++++|.++ +.+|..+..++.|+. .|.+
T Consensus 188 -----------~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i 256 (386)
T 2ca6_A 188 -----------LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256 (386)
T ss_dssp -----------TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred -----------CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC
Confidence 45566688887762 12336677888888888888885 456666666776665 3444
Q ss_pred ccccccccccccchhhhhhhhceeccccchhhHHHH--HhhHhhhhhcCCcccc----cccHhh-hccCCCCEEEccCCC
Q 043038 197 SRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEI--LNLVMVTIVSRNDLLK----NVPLEV-RNLKATQSLNFSHNT 269 (271)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~~L~L~~n~l~~----~~~~~l-~~l~~L~~L~l~~n~ 269 (271)
.+.+... ++..+.. +++|+.|++++|.+.+ .+|..+ ..+++|+.|++++|.
T Consensus 257 ~~~~~~~----------------------l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 257 SARGAAA----------------------VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CHHHHHH----------------------HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred chhhHHH----------------------HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 3321111 1122222 6889999999999987 488888 668999999999998
Q ss_pred CC
Q 043038 270 FT 271 (271)
Q Consensus 270 i~ 271 (271)
|+
T Consensus 315 l~ 316 (386)
T 2ca6_A 315 FS 316 (386)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 70
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=1.2e-20 Score=152.58 Aligned_cols=156 Identities=21% Similarity=0.199 Sum_probs=128.0
Q ss_pred CcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCC
Q 043038 8 TQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLK 84 (271)
Q Consensus 8 ~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 84 (271)
+.++.|++++|.+.+..+.. +++|++|++++|.+++..+..+. .+++|++|++++|.++...+..|..+++|+
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 110 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD----DLTELGTLGLANNQLASLPLGVFDHLTQLD 110 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT----TCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc----cCCcCCEEECCCCcccccChhHhcccCCCC
Confidence 57899999999999877755 46899999999999875544444 489999999999999966677888999999
Q ss_pred EEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCc
Q 043038 85 ILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLA 164 (271)
Q Consensus 85 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 164 (271)
+|++++|+++...+..|..+++|+.|++++|.+++..+..+..+++ |+.|++++|.+++..+..+..++
T Consensus 111 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-----------L~~L~L~~N~l~~~~~~~~~~l~ 179 (251)
T 3m19_A 111 KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN-----------LQTLSLSTNQLQSVPHGAFDRLG 179 (251)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-----------CCEEECCSSCCSCCCTTTTTTCT
T ss_pred EEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC-----------CCEEECCCCcCCccCHHHHhCCC
Confidence 9999999999666666788999999999999998544445655554 55666999999977777888999
Q ss_pred cccEEeccCCccce
Q 043038 165 ILQILDIADNNLSG 178 (271)
Q Consensus 165 ~L~~L~l~~n~l~~ 178 (271)
+|+.+++++|.+.+
T Consensus 180 ~L~~L~l~~N~~~c 193 (251)
T 3m19_A 180 KLQTITLFGNQFDC 193 (251)
T ss_dssp TCCEEECCSCCBCT
T ss_pred CCCEEEeeCCceeC
Confidence 99999999999874
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=3.5e-22 Score=176.42 Aligned_cols=176 Identities=25% Similarity=0.244 Sum_probs=140.2
Q ss_pred CccCCCcccEEECcCCCCCCCcccc-CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCC
Q 043038 3 NLTKFTQLLFRSLDSNNMSGLLPLI-SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQ 81 (271)
Q Consensus 3 ~~~~~~~L~~L~l~~n~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 81 (271)
.|+++++|++|++++|.+.+..|-. +++|++|++++|.+++ +| . .+.|++|++++|.+++..+. .++
T Consensus 53 ~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~-l~----~----~~~L~~L~L~~N~l~~~~~~---~l~ 120 (487)
T 3oja_A 53 DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE-LL----V----GPSIETLHAANNNISRVSCS---RGQ 120 (487)
T ss_dssp GGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE-EE----E----CTTCCEEECCSSCCCCEEEC---CCS
T ss_pred HHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC-CC----C----CCCcCEEECcCCcCCCCCcc---ccC
Confidence 4789999999999999998766622 6799999999999886 22 2 47899999999999854433 457
Q ss_pred CCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCcccc-CCCCccEEec-----------CCCCcccEEEecc
Q 043038 82 NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLK-NCTALESLDV-----------ERFSRMVVLNLRS 149 (271)
Q Consensus 82 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~-~l~~L~~L~l-----------~~~~~L~~L~l~~ 149 (271)
+|+.|++++|.+++..|..+..+++|+.|++++|.+.+..|..+. .+++|+.|++ ..+++|+.|++++
T Consensus 121 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~ 200 (487)
T 3oja_A 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSS 200 (487)
T ss_dssp SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCS
T ss_pred CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCC
Confidence 899999999999977777888899999999999999877777775 6888888887 3367788888888
Q ss_pred CccCCCCchhhhcCccccEEeccCCccceecCcccccccCCcc
Q 043038 150 NKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT 192 (271)
Q Consensus 150 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 192 (271)
|.+++ +|..+..+++|+.|++++|.++ .+|..+..++.|..
T Consensus 201 N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~ 241 (487)
T 3oja_A 201 NKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241 (487)
T ss_dssp SCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCE
T ss_pred CCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCE
Confidence 88874 4455778888888888888887 46666666665554
No 72
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=8.7e-21 Score=166.04 Aligned_cols=235 Identities=21% Similarity=0.274 Sum_probs=146.4
Q ss_pred CcccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEE
Q 043038 8 TQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILK 87 (271)
Q Consensus 8 ~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 87 (271)
++|+.|++++|.+.+ +|..+++|++|++++|.+++ ++.. .++|++|++++|.++ .+| .|..+++|++|+
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~-l~~~-------~~~L~~L~L~~n~l~-~lp-~~~~l~~L~~L~ 159 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKA-LSDL-------PPLLEYLGVSNNQLE-KLP-ELQNSSFLKIID 159 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSC-CCSC-------CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEE
T ss_pred CCCCEEEccCCcCCc-cccccCCCcEEECCCCccCc-ccCC-------CCCCCEEECcCCCCC-CCc-ccCCCCCCCEEE
Confidence 456666666666655 44445566666666666654 2211 257889999999888 466 588889999999
Q ss_pred ccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCC---------CCcccEEEeccCccCCCCch
Q 043038 88 LSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVER---------FSRMVVLNLRSNKFHGPLPT 158 (271)
Q Consensus 88 l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~---------~~~L~~L~l~~n~l~~~~~~ 158 (271)
+++|++++ +|..+ ++|+.+++++|.+.+ +| .+..+++|+.|+++. .++|+.|++++|.++ .+|
T Consensus 160 l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~-~lp- 231 (454)
T 1jl5_A 160 VDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE-ELP- 231 (454)
T ss_dssp CCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-SCC-
T ss_pred CCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCC-ccc-
Confidence 99998883 55433 578899999998884 56 578888888888722 347889999999887 566
Q ss_pred hhhcCccccEEeccCCccceecCcccccccCCcc-ccccccccccccccccc-hh------------hhhhhhceec--c
Q 043038 159 RFCDLAILQILDIADNNLSGAIPNYINNVTGMVT-TNSFSRSAQQHLHVPLD-VD------------VILMEKASVV--S 222 (271)
Q Consensus 159 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~-~n~~~~~~~~~~~~~~~-~~------------~~~~~~~~~~--~ 222 (271)
.+..+++|+.|++++|+++ .+|..+.++..|.. .|.+.+.+.. +.... .+ ...+..+.+. .
T Consensus 232 ~~~~l~~L~~L~l~~N~l~-~l~~~~~~L~~L~l~~N~l~~l~~~--~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~ 308 (454)
T 1jl5_A 232 ELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPEL--PQSLTFLDVSENIFSGLSELPPNLYYLNASSNE 308 (454)
T ss_dssp CCTTCTTCCEEECCSSCCS-SCCSCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSEESCCCTTCCEEECCSSC
T ss_pred ccCCCCCCCEEECCCCcCC-cccccccccCEEECCCCcccccCcc--cCcCCEEECcCCccCcccCcCCcCCEEECcCCc
Confidence 4788888999999998887 45554444443333 4444442110 00000 00 0000111110 0
Q ss_pred ccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038 223 REEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271 (271)
Q Consensus 223 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 271 (271)
...++. ..++|+.|++++|.+.+ +|.. +++|+.|++++|+++
T Consensus 309 l~~i~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~ 350 (454)
T 1jl5_A 309 IRSLCD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA 350 (454)
T ss_dssp CSEECC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred CCcccC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc
Confidence 000110 11467777787777765 5543 577888888888764
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.86 E-value=3e-21 Score=158.19 Aligned_cols=156 Identities=22% Similarity=0.154 Sum_probs=118.9
Q ss_pred CcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCC
Q 043038 8 TQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLK 84 (271)
Q Consensus 8 ~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 84 (271)
+.+++|++++|.+.+..+.. +++|++|++++|.++...+..+ .++++|++|++++|.++...+..|.++++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY----QSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTT----TTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHc----cCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence 45999999999998766644 4689999999999876443333 4589999999999999866778899999999
Q ss_pred EEEccCCcccccCCcccccCCCccEEEccCCccccc-cCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcC
Q 043038 85 ILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGT-IPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDL 163 (271)
Q Consensus 85 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~-~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 163 (271)
+|++++|.+....+..+..+++|+.|++++|.+.+. +|..+..+++|+.|+ +++|.+++..+..+..+
T Consensus 104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~-----------Ls~N~l~~~~~~~~~~l 172 (276)
T 2z62_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD-----------LSSNKIQSIYCTDLRVL 172 (276)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE-----------CCSSCCCEECGGGGHHH
T ss_pred EEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEE-----------CCCCCCCcCCHHHhhhh
Confidence 999999999866666788999999999999998752 577777777666555 66666654444455544
Q ss_pred cccc----EEeccCCccce
Q 043038 164 AILQ----ILDIADNNLSG 178 (271)
Q Consensus 164 ~~L~----~L~l~~n~l~~ 178 (271)
..++ .+++++|.+++
T Consensus 173 ~~L~~l~l~L~ls~n~l~~ 191 (276)
T 2z62_A 173 HQMPLLNLSLDLSLNPMNF 191 (276)
T ss_dssp HTCTTCCEEEECCSSCCCE
T ss_pred hhccccceeeecCCCcccc
Confidence 4444 56666666653
No 74
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=2.3e-23 Score=182.68 Aligned_cols=174 Identities=20% Similarity=0.194 Sum_probs=102.1
Q ss_pred ccCCCcccEEECcCCCCCCC----cccc---CCCccEEEccCCccccccchhhhhhccCCC-cccEEEccCcccCC----
Q 043038 4 LTKFTQLLFRSLDSNNMSGL----LPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETK-RLEALKLNDNYLQG---- 71 (271)
Q Consensus 4 ~~~~~~L~~L~l~~n~~~~~----~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~---- 71 (271)
+..+++|++|++++|.+... ++.. +++|++|++++|.+++..+..+...+.... +|++|++++|.++.
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 34566777777777776632 2222 357777777777766544444443322221 57777777777663
Q ss_pred CCCccccCCCCCCEEEccCCcccccCCcccc-----cCCCccEEEccCCccccc----cCccccCCCCccEEecC-----
Q 043038 72 ELPDCWMSDQNLKILKLSNNKFIGNLPNSFG-----SLAFLVWLDLGKNRLFGT----IPATLKNCTALESLDVE----- 137 (271)
Q Consensus 72 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~l~l~~n~l~~~----~~~~~~~l~~L~~L~l~----- 137 (271)
.++..+..+++|++|++++|.++...+..+. ..++|+.|++++|.+.+. ++..+..+++|+.|+++
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 2356666777777777777776533222221 234577777777766642 23444556667777661
Q ss_pred -------------CCCcccEEEeccCccCCC----CchhhhcCccccEEeccCCccc
Q 043038 138 -------------RFSRMVVLNLRSNKFHGP----LPTRFCDLAILQILDIADNNLS 177 (271)
Q Consensus 138 -------------~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~ 177 (271)
..++|+.|++++|.+++. ++..+..+++|+.|++++|.+.
T Consensus 184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 134677777777776643 3455556666777777766654
No 75
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=9.4e-23 Score=173.62 Aligned_cols=229 Identities=18% Similarity=0.177 Sum_probs=111.4
Q ss_pred ccEEECcCCCCCCCcc----cc---CC-CccEEEccCCccccccchhhhhhccCC-CcccEEEccCcccCCCCCcc----
Q 043038 10 LLFRSLDSNNMSGLLP----LI---SS-NLVYLGLSDNSFLGSISHFLCDKINET-KRLEALKLNDNYLQGELPDC---- 76 (271)
Q Consensus 10 L~~L~l~~n~~~~~~~----~~---~~-~L~~L~l~~n~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~---- 76 (271)
|++|++++|.+.+..+ .. ++ +|++|++++|.+++..+..+...+... ++|++|++++|.++...+..
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 5566666665554433 11 23 556666666655554444444433333 55666666666555333332
Q ss_pred ccCC-CCCCEEEccCCcccccCCcccc----c-CCCccEEEccCCccccccCc----cccCCCCccEEecCCCCcccEEE
Q 043038 77 WMSD-QNLKILKLSNNKFIGNLPNSFG----S-LAFLVWLDLGKNRLFGTIPA----TLKNCTALESLDVERFSRMVVLN 146 (271)
Q Consensus 77 ~~~l-~~L~~L~l~~n~~~~~~~~~~~----~-l~~L~~l~l~~n~l~~~~~~----~~~~l~~L~~L~l~~~~~L~~L~ 146 (271)
+... ++|++|++++|.++...+..+. . .++|+.|++++|.+.+..+. .+...+ ++|+.|+
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~----------~~L~~L~ 173 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP----------ANVNSLN 173 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSC----------TTCCEEE
T ss_pred HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCC----------ccccEee
Confidence 2222 4566666666655533332222 1 13556666666555532211 112221 2556666
Q ss_pred eccCccCCCCchhhh----cC-ccccEEeccCCcccee----cCccccc-ccCCcc----ccccccccccccccccchhh
Q 043038 147 LRSNKFHGPLPTRFC----DL-AILQILDIADNNLSGA----IPNYINN-VTGMVT----TNSFSRSAQQHLHVPLDVDV 212 (271)
Q Consensus 147 l~~n~l~~~~~~~~~----~l-~~L~~L~l~~n~l~~~----~~~~~~~-~~~L~~----~n~~~~~~~~~~~~~~~~~~ 212 (271)
+++|.+++..+..++ .. ++|+.|++++|.+++. ++..+.. .+.|+. .|.+.+.+...+
T Consensus 174 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l-------- 245 (362)
T 3goz_A 174 LRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENL-------- 245 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHH--------
T ss_pred ecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHH--------
Confidence 777777655444333 33 4677777777776531 2222322 123333 343333211111
Q ss_pred hhhhhceeccccchhhHHHHHhhHhhhhhcCCccccc-------ccHhhhccCCCCEEEccCCCC
Q 043038 213 ILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKN-------VPLEVRNLKATQSLNFSHNTF 270 (271)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-------~~~~l~~l~~L~~L~l~~n~i 270 (271)
......+++|+.|++++|.+.+. ++..+..+++|+.||+++|.+
T Consensus 246 --------------~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 246 --------------KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp --------------HHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred --------------HHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 11113456677777777763322 233455666777777777765
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=7.3e-21 Score=158.45 Aligned_cols=190 Identities=18% Similarity=0.277 Sum_probs=125.7
Q ss_pred cCCCcccEEECcCCCCCCCcccc--CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCC
Q 043038 5 TKFTQLLFRSLDSNNMSGLLPLI--SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQN 82 (271)
Q Consensus 5 ~~~~~L~~L~l~~n~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 82 (271)
.++++|+.|++++|.+... |.. +++|++|++++|.+++ ++. +..+++|++|++++|.++ .++ .+..+++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l-~~~~~l~~L~~L~L~~n~i~~-~~~-----~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~ 108 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITD-LAP-----LKNLTKITELELSGNPLK-NVS-AIAGLQS 108 (308)
T ss_dssp HHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCC-CGG-----GTTCCSCCEEECCSCCCS-CCG-GGTTCTT
T ss_pred HHcCCcCEEEeeCCCccCc-hhhhccCCCCEEEccCCcCCC-Chh-----HccCCCCCEEEccCCcCC-Cch-hhcCCCC
Confidence 3466777888887777643 222 5677888888887765 222 334777888888888777 333 5677777
Q ss_pred CCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhc
Q 043038 83 LKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCD 162 (271)
Q Consensus 83 L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 162 (271)
|++|++++|.+++ .+. +..+++|+.|++++|.+.+ ++. +.. +++|+.|++++|.+++ ++. +..
T Consensus 109 L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~-----------l~~L~~L~l~~n~l~~-~~~-l~~ 171 (308)
T 1h6u_A 109 IKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP-LAG-----------LTNLQYLSIGNAQVSD-LTP-LAN 171 (308)
T ss_dssp CCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGG-----------CTTCCEEECCSSCCCC-CGG-GTT
T ss_pred CCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc-ccC-----------CCCccEEEccCCcCCC-Chh-hcC
Confidence 8888888887773 333 6777778888888877763 332 333 3345566677777764 333 677
Q ss_pred CccccEEeccCCccceecCcccccccCCccccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhc
Q 043038 163 LAILQILDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVS 242 (271)
Q Consensus 163 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 242 (271)
+++|+.|++++|.+++ ++. +. .+++|+.|+++
T Consensus 172 l~~L~~L~l~~n~l~~-~~~-l~----------------------------------------------~l~~L~~L~L~ 203 (308)
T 1h6u_A 172 LSKLTTLKADDNKISD-ISP-LA----------------------------------------------SLPNLIEVHLK 203 (308)
T ss_dssp CTTCCEEECCSSCCCC-CGG-GG----------------------------------------------GCTTCCEEECT
T ss_pred CCCCCEEECCCCccCc-Chh-hc----------------------------------------------CCCCCCEEEcc
Confidence 7778888888777763 221 22 35567778888
Q ss_pred CCcccccccHhhhccCCCCEEEccCCCC
Q 043038 243 RNDLLKNVPLEVRNLKATQSLNFSHNTF 270 (271)
Q Consensus 243 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i 270 (271)
+|.+.+.. .+..+++|+.|++++|.+
T Consensus 204 ~N~l~~~~--~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 204 NNQISDVS--PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp TSCCCBCG--GGTTCTTCCEEEEEEEEE
T ss_pred CCccCccc--cccCCCCCCEEEccCCee
Confidence 88876533 377788888888887765
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.85 E-value=2.4e-22 Score=167.74 Aligned_cols=201 Identities=17% Similarity=0.142 Sum_probs=126.6
Q ss_pred CCCcccEEECcCCCCCCCcccc-----CCCccEEEccCCccccccchhhhhhc-cCCCcccEEEccCcccCCCCCccccC
Q 043038 6 KFTQLLFRSLDSNNMSGLLPLI-----SSNLVYLGLSDNSFLGSISHFLCDKI-NETKRLEALKLNDNYLQGELPDCWMS 79 (271)
Q Consensus 6 ~~~~L~~L~l~~n~~~~~~~~~-----~~~L~~L~l~~n~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~ 79 (271)
++++|++|++++|.+.+..|.. +++|++|++++|.+++. |..+.... ..+++|++|++++|++++..+..|..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 4667777777777777655543 34677777777777664 54433310 00266777777777777555566777
Q ss_pred CCCCCEEEccCCccccc--CCccc--ccCCCccEEEccCCcccc--ccCccccCCCCccEEecCCCCcccEEEeccCccC
Q 043038 80 DQNLKILKLSNNKFIGN--LPNSF--GSLAFLVWLDLGKNRLFG--TIPATLKNCTALESLDVERFSRMVVLNLRSNKFH 153 (271)
Q Consensus 80 l~~L~~L~l~~n~~~~~--~~~~~--~~l~~L~~l~l~~n~l~~--~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~ 153 (271)
+++|++|++++|++.+. .+..+ ..+++|+.|++++|.+.+ ..+..+. ..+++|+.|++++|.++
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~----------~~l~~L~~L~Ls~N~l~ 241 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA----------AARVQLQGLDLSHNSLR 241 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH----------HTTCCCSEEECTTSCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH----------hcCCCCCEEECCCCcCC
Confidence 77777777777775432 12222 566777777777777662 1111111 12345667778888888
Q ss_pred CCCc-hhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceeccccchhh
Q 043038 154 GPLP-TRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVE 228 (271)
Q Consensus 154 ~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (271)
+..| ..+..+++|+.|++++|+++ .+|..+. ++|+. .|.+.+. |.
T Consensus 242 ~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-----p~---------------------- 291 (312)
T 1wwl_A 242 DAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-----PS---------------------- 291 (312)
T ss_dssp SSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-----CC----------------------
T ss_pred cccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-----hh----------------------
Confidence 6554 44556788999999999887 6776665 34443 5555553 11
Q ss_pred HHHHHhhHhhhhhcCCcccc
Q 043038 229 YNEILNLVMVTIVSRNDLLK 248 (271)
Q Consensus 229 ~~~~~~~L~~L~L~~n~l~~ 248 (271)
+..+++|+.|++++|.+.+
T Consensus 292 -~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 292 -PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -TTTSCEEEEEECTTCTTTC
T ss_pred -HhhCCCCCEEeccCCCCCC
Confidence 1357789999999999875
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=1.6e-21 Score=156.53 Aligned_cols=202 Identities=15% Similarity=0.179 Sum_probs=140.0
Q ss_pred CccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcc-cCCCCCccccCCCCCCEEEccC-CcccccCCcc
Q 043038 23 LLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNY-LQGELPDCWMSDQNLKILKLSN-NKFIGNLPNS 100 (271)
Q Consensus 23 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~ 100 (271)
.+|...+++++|++++|.++...+..+ ..+++|++|++++|. ++...+.+|.++++|++|++++ |+++...+..
T Consensus 25 ~ip~~~~~l~~L~l~~n~l~~i~~~~~----~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 25 RIPSLPPSTQTLKLIETHLRTIPSHAF----SNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp SCCCCCTTCCEEEEESCCCSEECTTTT----TTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccCCCCCcccEEEEeCCcceEECHHHc----cCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 344434589999999999876333333 348899999999996 8755556888899999999998 8888666677
Q ss_pred cccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccC-ccCCCCchhhhcCcccc-EEeccCCccce
Q 043038 101 FGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSN-KFHGPLPTRFCDLAILQ-ILDIADNNLSG 178 (271)
Q Consensus 101 ~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~~ 178 (271)
|..+++|+.+++++|.+.+ +|. +..+++|+ .|+.|++++| .+++..+..|..+++|+ .+++++|+++
T Consensus 101 f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~--------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~- 169 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKM-FPD-LTKVYSTD--------IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT- 169 (239)
T ss_dssp EECCTTCCEEEEEEECCCS-CCC-CTTCCBCC--------SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-
T ss_pred hCCCCCCCEEeCCCCCCcc-ccc-cccccccc--------cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-
Confidence 8888999999999998884 565 55555443 2347778888 88765566688888888 9999988887
Q ss_pred ecCcccccccCCcc----ccc-cccccccccccccchhhhhhhhceeccccchhhHHHHH-hhHhhhhhcCCcccccccH
Q 043038 179 AIPNYINNVTGMVT----TNS-FSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEIL-NLVMVTIVSRNDLLKNVPL 252 (271)
Q Consensus 179 ~~~~~~~~~~~L~~----~n~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~ 252 (271)
.+|........|+. .|. +...+. ..+..+ ++|+.|++++|.+.+ +|.
T Consensus 170 ~i~~~~~~~~~L~~L~L~~n~~l~~i~~--------------------------~~~~~l~~~L~~L~l~~N~l~~-l~~ 222 (239)
T 2xwt_C 170 SVQGYAFNGTKLDAVYLNKNKYLTVIDK--------------------------DAFGGVYSGPSLLDVSQTSVTA-LPS 222 (239)
T ss_dssp EECTTTTTTCEEEEEECTTCTTCCEECT--------------------------TTTTTCSBCCSEEECTTCCCCC-CCC
T ss_pred ccCHhhcCCCCCCEEEcCCCCCcccCCH--------------------------HHhhccccCCcEEECCCCcccc-CCh
Confidence 55543322234433 331 333211 111345 677888888888864 554
Q ss_pred hhhccCCCCEEEccCC
Q 043038 253 EVRNLKATQSLNFSHN 268 (271)
Q Consensus 253 ~l~~l~~L~~L~l~~n 268 (271)
. .+++|+.|+++++
T Consensus 223 ~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 223 K--GLEHLKELIARNT 236 (239)
T ss_dssp T--TCTTCSEEECTTC
T ss_pred h--HhccCceeeccCc
Confidence 4 6778888888775
No 79
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=2.5e-20 Score=168.40 Aligned_cols=225 Identities=22% Similarity=0.247 Sum_probs=126.1
Q ss_pred CcccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEE
Q 043038 8 TQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILK 87 (271)
Q Consensus 8 ~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 87 (271)
++|+.|++++|.+.. +|..+++|++|++++|.++. +|. .+++|++|++++|.++ .+|. .+++|+.|+
T Consensus 61 ~~L~~L~L~~N~l~~-lp~~l~~L~~L~Ls~N~l~~-lp~-------~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~ 127 (622)
T 3g06_A 61 AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTS-LPV-------LPPGLLELSIFSNPLT-HLPA---LPSGLCKLW 127 (622)
T ss_dssp TTCSEEEECSCCCSC-CCCCCTTCCEEEECSCCCSC-CCC-------CCTTCCEEEECSCCCC-CCCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCCCC-CCCcCCCCCEEEcCCCcCCc-CCC-------CCCCCCEEECcCCcCC-CCCC---CCCCcCEEE
Confidence 455666666666553 33345566666666666553 332 1455666666666665 3333 345566666
Q ss_pred ccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec---------CCCCcccEEEeccCccCCCCch
Q 043038 88 LSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV---------ERFSRMVVLNLRSNKFHGPLPT 158 (271)
Q Consensus 88 l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l---------~~~~~L~~L~l~~n~l~~~~~~ 158 (271)
+++|+++ .+|.. +++|+.|++++|.+. .+|.. .++|+.|++ ..+++|+.|++++|.+++ +|.
T Consensus 128 L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~-~l~~~---~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~ 198 (622)
T 3g06_A 128 IFGNQLT-SLPVL---PPGLQELSVSDNQLA-SLPAL---PSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPT 198 (622)
T ss_dssp CCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC
T ss_pred CCCCCCC-cCCCC---CCCCCEEECcCCcCC-CcCCc---cCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCC
Confidence 6666665 33332 356667777776666 33432 233444443 223566777777777663 332
Q ss_pred hhhcCccccEEeccCCccceecCcccccccCCcc-ccccccccccccccccchhhhhhhhceec--cccchhhHHHHHhh
Q 043038 159 RFCDLAILQILDIADNNLSGAIPNYINNVTGMVT-TNSFSRSAQQHLHVPLDVDVILMEKASVV--SREEVVEYNEILNL 235 (271)
Q Consensus 159 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 235 (271)
. .++|+.|++++|.++ .+|..+.++..|.. .|.+.+.+ ... ..+..+.+. ....++. .+++
T Consensus 199 ~---~~~L~~L~L~~N~l~-~l~~~~~~L~~L~Ls~N~L~~lp-----~~l----~~L~~L~Ls~N~L~~lp~---~~~~ 262 (622)
T 3g06_A 199 L---PSELYKLWAYNNRLT-SLPALPSGLKELIVSGNRLTSLP-----VLP----SELKELMVSGNRLTSLPM---LPSG 262 (622)
T ss_dssp C---CTTCCEEECCSSCCS-SCCCCCTTCCEEECCSSCCSCCC-----CCC----TTCCEEECCSSCCSCCCC---CCTT
T ss_pred c---cchhhEEECcCCccc-ccCCCCCCCCEEEccCCccCcCC-----CCC----CcCcEEECCCCCCCcCCc---cccc
Confidence 2 345666666666665 44444333333333 45454422 100 111111111 1122222 4678
Q ss_pred HhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038 236 VMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271 (271)
Q Consensus 236 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 271 (271)
|+.|++++|.+. .+|..+..+++|+.|++++|.|+
T Consensus 263 L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 263 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCC
T ss_pred CcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCC
Confidence 999999999997 68999999999999999999875
No 80
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=1.8e-20 Score=147.23 Aligned_cols=182 Identities=21% Similarity=0.125 Sum_probs=139.0
Q ss_pred ccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEcc
Q 043038 10 LLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLS 89 (271)
Q Consensus 10 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 89 (271)
-+.++++++.+........+++++|++++|.++...+..+ ..+++|++|++++|+++...+..|..+++|++|+++
T Consensus 9 ~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVF----DELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTT----TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhh----cccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 3577888888876555556789999999999886333333 348999999999999986556667889999999999
Q ss_pred CCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEE
Q 043038 90 NNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQIL 169 (271)
Q Consensus 90 ~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 169 (271)
+|.++...+..+..+++|+.|++++|.+.+..+..+..++ +|+.|++++|.+++..+..+..+++|+.+
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLT-----------QLKDLRLYQNQLKSVPDGVFDRLTSLQYI 153 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----------TCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCC-----------cCCEEECCCCccceeCHHHhccCCCccEE
Confidence 9999866566678899999999999998854444455444 45566689999986666668889999999
Q ss_pred eccCCccceecCcccccccCCccccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCccccc
Q 043038 170 DIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKN 249 (271)
Q Consensus 170 ~l~~n~l~~~~~~~~~~~~~L~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 249 (271)
++++|.+.+. +++++.|+++.|.+.+.
T Consensus 154 ~l~~N~~~~~-----------------------------------------------------~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 154 WLHDNPWDCT-----------------------------------------------------CPGIRYLSEWINKHSGV 180 (208)
T ss_dssp ECCSCCBCCC-----------------------------------------------------TTTTHHHHHHHHHCTTT
T ss_pred EecCCCeecC-----------------------------------------------------CCCHHHHHHHHHhCCce
Confidence 9999876532 33456777778888888
Q ss_pred ccHhhhccCC
Q 043038 250 VPLEVRNLKA 259 (271)
Q Consensus 250 ~~~~l~~l~~ 259 (271)
+|.+++.++.
T Consensus 181 ip~~~~~l~~ 190 (208)
T 2o6s_A 181 VRNSAGSVAP 190 (208)
T ss_dssp BBCTTSSBCT
T ss_pred eeccCccccC
Confidence 8877776654
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=2.1e-20 Score=150.04 Aligned_cols=123 Identities=13% Similarity=0.092 Sum_probs=97.3
Q ss_pred CcccEEECcCCCCCCCcccc---CCCccEEEccCCc-cccccchhhhhhccCCCcccEEEccC-cccCCCCCccccCCCC
Q 043038 8 TQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNS-FLGSISHFLCDKINETKRLEALKLND-NYLQGELPDCWMSDQN 82 (271)
Q Consensus 8 ~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~ 82 (271)
+.++.|++++|.+.+..+.. +++|++|++++|. ++...+.. |.++++|++|++++ |.++...+..|.++++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~----f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~ 106 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS----FYNLSKVTHIEIRNTRNLTYIDPDALKELPL 106 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTT----EESCTTCCEEEEEEETTCCEECTTSEECCTT
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhH----cCCCcCCcEEECCCCCCeeEcCHHHhCCCCC
Confidence 47999999999998766644 5689999999997 76533323 44589999999998 9998666678999999
Q ss_pred CCEEEccCCcccccCCcccccCCCcc---EEEccCC-ccccccCccccCCCCcc-EEec
Q 043038 83 LKILKLSNNKFIGNLPNSFGSLAFLV---WLDLGKN-RLFGTIPATLKNCTALE-SLDV 136 (271)
Q Consensus 83 L~~L~l~~n~~~~~~~~~~~~l~~L~---~l~l~~n-~l~~~~~~~~~~l~~L~-~L~l 136 (271)
|++|++++|++++ +|. +..+++|+ .+++++| .+.+..+..+..+++|+ .+++
T Consensus 107 L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l 163 (239)
T 2xwt_C 107 LKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163 (239)
T ss_dssp CCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEEC
T ss_pred CCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEc
Confidence 9999999999984 665 77888888 9999999 88854445566677666 6654
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.83 E-value=1.5e-19 Score=147.62 Aligned_cols=176 Identities=26% Similarity=0.273 Sum_probs=138.7
Q ss_pred CcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCC
Q 043038 8 TQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLK 84 (271)
Q Consensus 8 ~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 84 (271)
+.++.|++++|.+.+..+.. +++|++|++++|.++. ++.. .|..+++|++|++++|.++...+..|..+++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 112 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAG---IFKELKNLETLWVTDNKLQALPIGVFDQLVNLA 112 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTT---TTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChh---hhcCCCCCCEEECCCCcCCcCCHhHcccccCCC
Confidence 46999999999998776654 4699999999999986 3322 234589999999999999966667788999999
Q ss_pred EEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCc
Q 043038 85 ILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLA 164 (271)
Q Consensus 85 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 164 (271)
+|++++|.++...+..|..+++|+.|++++|.+.+..+..+..+++ |+.|++++|.+++..+..|..++
T Consensus 113 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-----------L~~L~L~~n~l~~~~~~~~~~l~ 181 (270)
T 2o6q_A 113 ELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS-----------LKELRLYNNQLKRVPEGAFDKLT 181 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-----------CCEEECCSSCCSCCCTTTTTTCT
T ss_pred EEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcc-----------cceeEecCCcCcEeChhHhccCC
Confidence 9999999999777777889999999999999998443344555554 55666888988876666788889
Q ss_pred cccEEeccCCccceecCcccccccCCcc----cccccc
Q 043038 165 ILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSR 198 (271)
Q Consensus 165 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~ 198 (271)
+|+.|++++|++++..+..+..++.|+. .|.+..
T Consensus 182 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 9999999999988555555676777665 455543
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.83 E-value=5.9e-20 Score=151.61 Aligned_cols=177 Identities=19% Similarity=0.175 Sum_probs=142.4
Q ss_pred CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCc
Q 043038 28 SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFL 107 (271)
Q Consensus 28 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 107 (271)
+++++.++++++.++. +|..++ +.++.|++++|.++...+..|..+++|++|++++|.++.. +. ...+++|
T Consensus 9 l~~l~~l~~~~~~l~~-ip~~~~------~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L 79 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTA-LPPDLP------KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVL 79 (290)
T ss_dssp STTCCEEECTTSCCSS-CCSCCC------TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTC
T ss_pred cCCccEEECCCCCCCc-CCCCCC------CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcC
Confidence 5688999999999975 554432 5789999999999877778899999999999999999843 33 2678999
Q ss_pred cEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceecCcccccc
Q 043038 108 VWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNV 187 (271)
Q Consensus 108 ~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 187 (271)
+.|++++|.+. .+|..+..++ +|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+.
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~-----------~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-- 145 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLP-----------ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT-- 145 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCT-----------TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTT--
T ss_pred CEEECCCCcCC-cCchhhccCC-----------CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcc--
Confidence 99999999988 6776655554 455666999999977778899999999999999999843333322
Q ss_pred cCCccccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccC
Q 043038 188 TGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSH 267 (271)
Q Consensus 188 ~~L~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 267 (271)
.+++|+.|++++|++.+..+..|..+++|+.|++++
T Consensus 146 --------------------------------------------~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 181 (290)
T 1p9a_G 146 --------------------------------------------PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181 (290)
T ss_dssp --------------------------------------------TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred --------------------------------------------cccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCC
Confidence 345678899999999875555678999999999999
Q ss_pred CCCC
Q 043038 268 NTFT 271 (271)
Q Consensus 268 n~i~ 271 (271)
|+|+
T Consensus 182 N~l~ 185 (290)
T 1p9a_G 182 NSLY 185 (290)
T ss_dssp SCCC
T ss_pred CcCC
Confidence 9875
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=5.6e-21 Score=159.28 Aligned_cols=203 Identities=15% Similarity=0.089 Sum_probs=144.4
Q ss_pred CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccc--cCCCCCCEEEccCCcccccCC----ccccc
Q 043038 30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCW--MSDQNLKILKLSNNKFIGNLP----NSFGS 103 (271)
Q Consensus 30 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~~~~ 103 (271)
.++.+.+.++.++...-..+...+ .+++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVL-AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHH-HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhc-ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 578889988887532111122211 25679999999999998888887 889999999999999986544 33456
Q ss_pred CCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCC--C--chhhhcCccccEEeccCCcccee
Q 043038 104 LAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGP--L--PTRFCDLAILQILDIADNNLSGA 179 (271)
Q Consensus 104 l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~--~--~~~~~~l~~L~~L~l~~n~l~~~ 179 (271)
+++|+.|++++|.+.+..+..+..+++ |++|++++|.+.+. . +..+..+++|++|++++|+++ .
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~-----------L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ 211 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPA-----------LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-T 211 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTT-----------CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-C
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCC-----------CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-c
Confidence 899999999999998666666665554 55666999987532 1 122367889999999999997 3
Q ss_pred cCc----ccccccCCcc----ccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCccccccc
Q 043038 180 IPN----YINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVP 251 (271)
Q Consensus 180 ~~~----~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 251 (271)
++. .+..++.|+. .|.+.+..+..+... ..+++|+.|++++|.+. .+|
T Consensus 212 l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~-----------------------~~~~~L~~L~Ls~N~l~-~lp 267 (310)
T 4glp_A 212 PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC-----------------------MWSSALNSLNLSFAGLE-QVP 267 (310)
T ss_dssp HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC-----------------------CCCTTCCCEECCSSCCC-SCC
T ss_pred hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc-----------------------cCcCcCCEEECCCCCCC-chh
Confidence 333 2345566655 666665421111100 12368999999999997 578
Q ss_pred HhhhccCCCCEEEccCCCCC
Q 043038 252 LEVRNLKATQSLNFSHNTFT 271 (271)
Q Consensus 252 ~~l~~l~~L~~L~l~~n~i~ 271 (271)
..+. ++|++|++++|+|+
T Consensus 268 ~~~~--~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 268 KGLP--AKLRVLDLSSNRLN 285 (310)
T ss_dssp SCCC--SCCSCEECCSCCCC
T ss_pred hhhc--CCCCEEECCCCcCC
Confidence 7764 89999999999885
No 85
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=2.2e-19 Score=160.53 Aligned_cols=184 Identities=24% Similarity=0.343 Sum_probs=138.6
Q ss_pred cccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEc
Q 043038 9 QLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKL 88 (271)
Q Consensus 9 ~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 88 (271)
+++.|++++|.+.+..+..+++|++|++++|.++. +| . .+++|++|++++|.+++ +|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~-ip-~------~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALIS-LP-E------LPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSC-CC-C------CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcc-cc-c------ccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 78999999999987444457899999999999984 66 1 26899999999999995 776 655 9999999
Q ss_pred cCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccE
Q 043038 89 SNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQI 168 (271)
Q Consensus 89 ~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 168 (271)
++|.+++ +|. .+++|+.|++++|.+++ +|. . +++|+.|++++|.+++ +|. +. ++|+.
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~-----------l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~ 184 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---L-----------PTSLEVLSVRNNQLTF-LPE-LP--ESLEA 184 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---C-----------CTTCCEEECCSSCCSC-CCC-CC--TTCCE
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---c-----------CCCcCEEECCCCCCCC-cch-hh--CCCCE
Confidence 9999985 655 57899999999999884 554 2 2456677799999985 666 55 89999
Q ss_pred EeccCCccceecCcccccccCCccccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCcccc
Q 043038 169 LDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLK 248 (271)
Q Consensus 169 L~l~~n~l~~~~~~~~~~~~~L~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 248 (271)
|++++|.++ .+|. +.. .|. ...+.|+.|++++|.+.
T Consensus 185 L~Ls~N~L~-~lp~-~~~--~L~---------------------------------------~~~~~L~~L~Ls~N~l~- 220 (571)
T 3cvr_A 185 LDVSTNLLE-SLPA-VPV--RNH---------------------------------------HSEETEIFFRCRENRIT- 220 (571)
T ss_dssp EECCSSCCS-SCCC-CC-------------------------------------------------CCEEEECCSSCCC-
T ss_pred EECcCCCCC-chhh-HHH--hhh---------------------------------------cccccceEEecCCCcce-
Confidence 999999998 6665 332 210 12334567777777775
Q ss_pred cccHhhhccCCCCEEEccCCCCC
Q 043038 249 NVPLEVRNLKATQSLNFSHNTFT 271 (271)
Q Consensus 249 ~~~~~l~~l~~L~~L~l~~n~i~ 271 (271)
.+|..+..+++|+.|++++|.|+
T Consensus 221 ~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 221 HIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp CCCGGGGGSCTTEEEECCSSSCC
T ss_pred ecCHHHhcCCCCCEEEeeCCcCC
Confidence 37777767777777777777764
No 86
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=3.3e-19 Score=161.13 Aligned_cols=222 Identities=21% Similarity=0.225 Sum_probs=162.9
Q ss_pred cccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEc
Q 043038 9 QLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKL 88 (271)
Q Consensus 9 ~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 88 (271)
.++.|++++|.+...++...++|++|++++|.++. +|. .+++|++|++++|.++ .+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~-lp~-------~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTS-LPA-------LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSC-CCC-------CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcCccChhhCCCCcEEEecCCCCCC-CCC-------cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 58899999999984433345799999999999985 554 2689999999999998 5665 6789999999
Q ss_pred cCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec---------CCCCcccEEEeccCccCCCCchh
Q 043038 89 SNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV---------ERFSRMVVLNLRSNKFHGPLPTR 159 (271)
Q Consensus 89 ~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l---------~~~~~L~~L~l~~n~l~~~~~~~ 159 (271)
++|.++ .+|. .+++|+.|++++|.++ .+|.. +++|+.|++ ..+++|+.|++++|.+++ +|
T Consensus 109 s~N~l~-~l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~-l~-- 177 (622)
T 3g06_A 109 FSNPLT-HLPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTS-LP-- 177 (622)
T ss_dssp CSCCCC-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CC--
T ss_pred cCCcCC-CCCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCC-Cc--
Confidence 999998 4554 5688999999999998 56654 477888887 234578999999999984 55
Q ss_pred hhcCccccEEeccCCccceecCcccccccCCcc-ccccccccccccccccchhhhhhhhceec--cccchhhHHHHHhhH
Q 043038 160 FCDLAILQILDIADNNLSGAIPNYINNVTGMVT-TNSFSRSAQQHLHVPLDVDVILMEKASVV--SREEVVEYNEILNLV 236 (271)
Q Consensus 160 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L 236 (271)
..+++|+.|++++|.++ .+|..+.++..|.. .|.+...+ ... ..+..+.+. ....++ ..+++|
T Consensus 178 -~~~~~L~~L~Ls~N~l~-~l~~~~~~L~~L~L~~N~l~~l~-----~~~----~~L~~L~Ls~N~L~~lp---~~l~~L 243 (622)
T 3g06_A 178 -MLPSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLP-----ALP----SGLKELIVSGNRLTSLP---VLPSEL 243 (622)
T ss_dssp -CCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSSCC-----CCC----TTCCEEECCSSCCSCCC---CCCTTC
T ss_pred -ccCCCCcEEECCCCCCC-CCCCccchhhEEECcCCcccccC-----CCC----CCCCEEEccCCccCcCC---CCCCcC
Confidence 45678999999999998 56666555555544 55555432 111 111111111 112222 345788
Q ss_pred hhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038 237 MVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271 (271)
Q Consensus 237 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 271 (271)
+.|++++|.+.+ +|. .+++|+.|++++|+|+
T Consensus 244 ~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~ 274 (622)
T 3g06_A 244 KELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT 274 (622)
T ss_dssp CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC
T ss_pred cEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC
Confidence 999999998864 665 6788999999999875
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.81 E-value=1.2e-20 Score=158.87 Aligned_cols=172 Identities=18% Similarity=0.142 Sum_probs=87.3
Q ss_pred CcccEEECcCCCCCCCcccc--CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCE
Q 043038 8 TQLLFRSLDSNNMSGLLPLI--SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKI 85 (271)
Q Consensus 8 ~~L~~L~l~~n~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 85 (271)
+.++.+++++|.+.+..+.. +++|++|++++|.+++. .++..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~---~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~ 146 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS---TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 146 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHH---HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHH---HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCE
Confidence 44555555555554443332 23555555555554321 12222233555555555555554444444555555555
Q ss_pred EEccCC-ccccc-CCcccccCCCccEEEccCC-ccccc-cCccccCCCCccEEecCCCCcccEEEeccC--ccC-CCCch
Q 043038 86 LKLSNN-KFIGN-LPNSFGSLAFLVWLDLGKN-RLFGT-IPATLKNCTALESLDVERFSRMVVLNLRSN--KFH-GPLPT 158 (271)
Q Consensus 86 L~l~~n-~~~~~-~~~~~~~l~~L~~l~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n--~l~-~~~~~ 158 (271)
|++++| .+++. .+..+..+++|+.|++++| .+++. ++..+..++ ++|++|++++| .++ +.++.
T Consensus 147 L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~----------~~L~~L~l~~~~~~~~~~~l~~ 216 (336)
T 2ast_B 147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS----------ETITQLNLSGYRKNLQKSDLST 216 (336)
T ss_dssp EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC----------TTCCEEECCSCGGGSCHHHHHH
T ss_pred EECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc----------cCCCEEEeCCCcccCCHHHHHH
Confidence 555555 34321 2333444555555555555 44422 233333333 04556667777 343 24455
Q ss_pred hhhcCccccEEeccCCc-cceecCcccccccCCcc
Q 043038 159 RFCDLAILQILDIADNN-LSGAIPNYINNVTGMVT 192 (271)
Q Consensus 159 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~ 192 (271)
.+..+++|+.|++++|. +++..+..+..+++|+.
T Consensus 217 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~ 251 (336)
T 2ast_B 217 LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 251 (336)
T ss_dssp HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence 66677778888887777 55455556666666555
No 88
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=9.6e-19 Score=138.58 Aligned_cols=155 Identities=16% Similarity=0.160 Sum_probs=129.1
Q ss_pred ccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEcc
Q 043038 10 LLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLS 89 (271)
Q Consensus 10 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 89 (271)
-+.+++++|.+...++.....+++|++++|.++...+.. .|..+++|++|++++|.++...+..|..+++|++|+++
T Consensus 13 ~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~---~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATG---IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCC---CGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchh---hhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 358999999998654444568899999999998743422 23348999999999999996667789999999999999
Q ss_pred CCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEE
Q 043038 90 NNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQIL 169 (271)
Q Consensus 90 ~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 169 (271)
+|++++..+..|..+++|+.|++++|.+.+..|..+..+++ |+.|++++|.+++..|..|..+++|+.|
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-----------L~~L~L~~N~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS-----------VRLLSLYDNQITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTT-----------CSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCcc-----------CCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence 99999777777999999999999999999666777766655 4566699999998778899999999999
Q ss_pred eccCCccce
Q 043038 170 DIADNNLSG 178 (271)
Q Consensus 170 ~l~~n~l~~ 178 (271)
++++|.+.+
T Consensus 159 ~L~~N~l~c 167 (220)
T 2v70_A 159 NLLANPFNC 167 (220)
T ss_dssp ECCSCCEEC
T ss_pred EecCcCCcC
Confidence 999999874
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=9.3e-21 Score=162.60 Aligned_cols=222 Identities=16% Similarity=0.173 Sum_probs=158.9
Q ss_pred CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccC---CCCCccc-------cCCCCCCEEEccCCcccc--
Q 043038 28 SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQ---GELPDCW-------MSDQNLKILKLSNNKFIG-- 95 (271)
Q Consensus 28 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~---~~~~~~~-------~~l~~L~~L~l~~n~~~~-- 95 (271)
+++|++|++++|.++...+..++..+..+++|++|++++|.+. +.+|..+ ..+++|++|++++|.++.
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 4689999999999988777777777888999999999997543 3445444 688999999999999985
Q ss_pred --cCCcccccCCCccEEEccCCccccccCccccCC-CCccEEec-CCCCcccEEEeccCccC-CCCc---hhhhcCcccc
Q 043038 96 --NLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNC-TALESLDV-ERFSRMVVLNLRSNKFH-GPLP---TRFCDLAILQ 167 (271)
Q Consensus 96 --~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l-~~L~~L~l-~~~~~L~~L~l~~n~l~-~~~~---~~~~~l~~L~ 167 (271)
.++..+..+++|+.|++++|.+.+..+..+... ..+....+ ...++|++|++++|.++ +..+ ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 356678889999999999999874433333321 10000000 00146778889999997 3344 4677889999
Q ss_pred EEeccCCccce-----ecCcccccccCCcc----ccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhh
Q 043038 168 ILDIADNNLSG-----AIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMV 238 (271)
Q Consensus 168 ~L~l~~n~l~~-----~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 238 (271)
.|++++|.++. ..+..+..++.|+. .|.+...+. ..++..+..+++|+.
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~----------------------~~l~~~l~~~~~L~~ 248 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS----------------------SALAIALKSWPNLRE 248 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH----------------------HHHHHHGGGCTTCCE
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHH----------------------HHHHHHHccCCCcCE
Confidence 99999999872 23336667777766 343332100 112333356789999
Q ss_pred hhhcCCccccc----ccHhhhc--cCCCCEEEccCCCCC
Q 043038 239 TIVSRNDLLKN----VPLEVRN--LKATQSLNFSHNTFT 271 (271)
Q Consensus 239 L~L~~n~l~~~----~~~~l~~--l~~L~~L~l~~n~i~ 271 (271)
|+|++|.+.+. ++..+.. +++|+.|++++|.|+
T Consensus 249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence 99999999765 5677754 999999999999875
No 90
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=4e-19 Score=161.28 Aligned_cols=213 Identities=17% Similarity=0.056 Sum_probs=155.9
Q ss_pred EEECcCCCCCCCccccC-CCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccC
Q 043038 12 FRSLDSNNMSGLLPLIS-SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSN 90 (271)
Q Consensus 12 ~L~l~~n~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 90 (271)
..+.++-.++.+ |..+ +++++|++++|.++...+..+ .++++|++|++++|.|+...+.+|.++++|++|++++
T Consensus 35 ~~~c~~~~l~~v-P~~lp~~~~~LdLs~N~i~~l~~~~f----~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~ 109 (635)
T 4g8a_A 35 TYQCMELNFYKI-PDNLPFSTKNLDLSFNPLRHLGSYSF----FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 109 (635)
T ss_dssp EEECTTSCCSSC-CSSSCTTCCEEECTTSCCCEECTTTT----TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred EEECCCCCcCcc-CCCCCcCCCEEEeeCCCCCCCCHHHH----hCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccC
Confidence 457777777754 4444 589999999999987444444 4599999999999999966677899999999999999
Q ss_pred CcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCC-CCchhhhcCccccEE
Q 043038 91 NKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHG-PLPTRFCDLAILQIL 169 (271)
Q Consensus 91 n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L 169 (271)
|+++...++.|.++++|+.|++++|.+++..+..++.+++ |++|++++|.+++ ..|..+..++.|++|
T Consensus 110 N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~-----------L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 178 (635)
T 4g8a_A 110 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT-----------LKELNVAHNLIQSFKLPEYFSNLTNLEHL 178 (635)
T ss_dssp CCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTT-----------CCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred CcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcc-----------cCeeccccCccccCCCchhhccchhhhhh
Confidence 9999666678999999999999999998544445665554 5566699999975 357888999999999
Q ss_pred eccCCccceecCcccccccCCcc--------ccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhh
Q 043038 170 DIADNNLSGAIPNYINNVTGMVT--------TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIV 241 (271)
Q Consensus 170 ~l~~n~l~~~~~~~~~~~~~L~~--------~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 241 (271)
++++|++++..+..+..+..+.. .|.+... +... .....++.+++
T Consensus 179 ~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i-----~~~~----------------------~~~~~~~~l~l 231 (635)
T 4g8a_A 179 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-----QPGA----------------------FKEIRLHKLTL 231 (635)
T ss_dssp ECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE-----CTTT----------------------TTTCEEEEEEE
T ss_pred cccCccccccccccccchhhhhhhhhhhhcccCccccc-----Cccc----------------------ccchhhhhhhh
Confidence 99999999777777766655443 2222221 1000 01223455677
Q ss_pred cCCcccc-cccHhhhccCCCCEEEccC
Q 043038 242 SRNDLLK-NVPLEVRNLKATQSLNFSH 267 (271)
Q Consensus 242 ~~n~l~~-~~~~~l~~l~~L~~L~l~~ 267 (271)
.+|.... ..+..+..+..++...+..
T Consensus 232 ~~n~~~~~~~~~~~~~l~~l~~~~l~~ 258 (635)
T 4g8a_A 232 RNNFDSLNVMKTCIQGLAGLEVHRLVL 258 (635)
T ss_dssp ESCCSSHHHHHHHHHTTTTCEEEEEEE
T ss_pred hcccccccccchhhcCCcccccccccc
Confidence 7776543 3456678888888776643
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=2e-18 Score=143.71 Aligned_cols=163 Identities=19% Similarity=0.366 Sum_probs=120.7
Q ss_pred CCCccCCCcccEEECcCCCCCCCccc-cCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccC
Q 043038 1 MPNLTKFTQLLFRSLDSNNMSGLLPL-ISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMS 79 (271)
Q Consensus 1 ~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 79 (271)
+|++.++++|++|++++|.+.+..+- .+++|++|++++|.+++ ++ .+..+++|++|++++|.++ .++. +..
T Consensus 56 l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~-~~-----~~~~l~~L~~L~l~~n~l~-~~~~-l~~ 127 (308)
T 1h6u_A 56 IEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN-VS-----AIAGLQSIKTLDLTSTQIT-DVTP-LAG 127 (308)
T ss_dssp CTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC-CG-----GGTTCTTCCEEECTTSCCC-CCGG-GTT
T ss_pred chhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCC-ch-----hhcCCCCCCEEECCCCCCC-Cchh-hcC
Confidence 46788999999999999999876652 25799999999999986 33 3555999999999999998 4443 889
Q ss_pred CCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec-----------CCCCcccEEEec
Q 043038 80 DQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV-----------ERFSRMVVLNLR 148 (271)
Q Consensus 80 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l-----------~~~~~L~~L~l~ 148 (271)
+++|++|++++|.+++ .+. +..+++|+.|++++|.+.+ ++. +..+++|+.|++ ..+++|++|+++
T Consensus 128 l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~ 203 (308)
T 1h6u_A 128 LSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLK 203 (308)
T ss_dssp CTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECT
T ss_pred CCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEcc
Confidence 9999999999999984 433 8889999999999999984 444 666777666664 233455555555
Q ss_pred cCccCCCCchhhhcCccccEEeccCCccc
Q 043038 149 SNKFHGPLPTRFCDLAILQILDIADNNLS 177 (271)
Q Consensus 149 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 177 (271)
+|.+++. + .+..+++|+.|++++|.++
T Consensus 204 ~N~l~~~-~-~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 204 NNQISDV-S-PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp TSCCCBC-G-GGTTCTTCCEEEEEEEEEE
T ss_pred CCccCcc-c-cccCCCCCCEEEccCCeee
Confidence 5555532 2 2455555555555555554
No 92
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=1.3e-18 Score=137.75 Aligned_cols=152 Identities=18% Similarity=0.213 Sum_probs=126.1
Q ss_pred cEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccC
Q 043038 11 LFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSN 90 (271)
Q Consensus 11 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 90 (271)
+.++++++.+...+....++++.|++++|.++...+.. |..+++|++|++++|.++...|..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~----~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGA----FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTS----STTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhH----hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 67899999888654444569999999999998643333 44589999999999999977789999999999999999
Q ss_pred CcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEEe
Q 043038 91 NKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILD 170 (271)
Q Consensus 91 n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 170 (271)
|.++...+..|..+++|+.|++++|.+.+..|..+..+++ |+.|++++|.+++..+..|..+++|+.++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-----------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN-----------LNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-----------CCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCC-----------CCEEECCCCcCCEECHHHHhCCCCCCEEE
Confidence 9999555566788999999999999998666666666554 45666999999977777899999999999
Q ss_pred ccCCccc
Q 043038 171 IADNNLS 177 (271)
Q Consensus 171 l~~n~l~ 177 (271)
+++|.+.
T Consensus 159 L~~N~~~ 165 (220)
T 2v9t_B 159 LAQNPFI 165 (220)
T ss_dssp CCSSCEE
T ss_pred eCCCCcC
Confidence 9999986
No 93
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=3.5e-18 Score=136.20 Aligned_cols=153 Identities=21% Similarity=0.137 Sum_probs=126.2
Q ss_pred ccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEcc
Q 043038 10 LLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLS 89 (271)
Q Consensus 10 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 89 (271)
-+.++++++.+...++...+++++|++++|.+++..|..+. .+++|++|++++|.++...+..|..+++|++|+++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFD----SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTT----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhh----CccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 45789999888765554567999999999999875555444 48999999999999985555678899999999999
Q ss_pred CCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEE
Q 043038 90 NNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQIL 169 (271)
Q Consensus 90 ~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 169 (271)
+|+++...+..|..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+++..+..+..+++|+.+
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~-----------L~~L~L~~N~l~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTH-----------LTHLALDQNQLKSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTT-----------CSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCC-----------CCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 99999666667888999999999999998 77877766555 4566699999987666778899999999
Q ss_pred eccCCccce
Q 043038 170 DIADNNLSG 178 (271)
Q Consensus 170 ~l~~n~l~~ 178 (271)
++++|.+.+
T Consensus 165 ~l~~N~~~c 173 (229)
T 3e6j_A 165 YLFGNPWDC 173 (229)
T ss_dssp ECTTSCBCT
T ss_pred EeeCCCccC
Confidence 999998874
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=1.1e-18 Score=136.97 Aligned_cols=161 Identities=22% Similarity=0.194 Sum_probs=128.6
Q ss_pred CCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCC
Q 043038 7 FTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNL 83 (271)
Q Consensus 7 ~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 83 (271)
.+++++|++++|.+.+..+.. +++|++|++++|.++...+.. |..+++|++|++++|.++...+..|..+++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 102 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV----FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL 102 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhh----cCCCCCcCEEECCCCcCCccCHhHhcCccCC
Confidence 467999999999999766654 579999999999998633333 3358999999999999996666678899999
Q ss_pred CEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcC
Q 043038 84 KILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDL 163 (271)
Q Consensus 84 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 163 (271)
++|++++|++++..+..+..+++|+.+++++|.+++..+..+..+++ |+.|++++|.+.+ .+
T Consensus 103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~-----------L~~L~l~~N~~~~-------~~ 164 (208)
T 2o6s_A 103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS-----------LQYIWLHDNPWDC-------TC 164 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT-----------CCEEECCSCCBCC-------CT
T ss_pred CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCC-----------ccEEEecCCCeec-------CC
Confidence 99999999999666666888999999999999998544444555554 5566688887764 34
Q ss_pred ccccEEeccCCccceecCcccccccC
Q 043038 164 AILQILDIADNNLSGAIPNYINNVTG 189 (271)
Q Consensus 164 ~~L~~L~l~~n~l~~~~~~~~~~~~~ 189 (271)
+.++.+++..|+++|.+|..++.++.
T Consensus 165 ~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 165 PGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCHHHHHHHHHhCCceeeccCccccC
Confidence 57888889899998888888877654
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.77 E-value=6.5e-20 Score=156.08 Aligned_cols=229 Identities=19% Similarity=0.142 Sum_probs=165.2
Q ss_pred EEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCC-cccEEEccCcccCCCCCccccCC-----CC
Q 043038 12 FRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETK-RLEALKLNDNYLQGELPDCWMSD-----QN 82 (271)
Q Consensus 12 ~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l-----~~ 82 (271)
.+++++|.+.+.+|.. .++|++|++++|.+++..+..+...+..++ +|++|++++|.++...+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 4688999999888766 346999999999999877766777777788 89999999999986666666664 89
Q ss_pred CCEEEccCCcccccCCcccc----cC-CCccEEEccCCccccccCccccCCCCccEEecCC-CCcccEEEeccCccCCCC
Q 043038 83 LKILKLSNNKFIGNLPNSFG----SL-AFLVWLDLGKNRLFGTIPATLKNCTALESLDVER-FSRMVVLNLRSNKFHGPL 156 (271)
Q Consensus 83 L~~L~l~~n~~~~~~~~~~~----~l-~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~-~~~L~~L~l~~n~l~~~~ 156 (271)
|++|++++|.+++..+..+. .. ++|+.|++++|.+.+..+..+...- .. .++|++|++++|.+++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l-------~~~~~~L~~L~Ls~N~l~~~~ 154 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF-------SNLPASITSLNLRGNDLGIKS 154 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHH-------TTSCTTCCEEECTTSCGGGSC
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHH-------HhCCCceeEEEccCCcCCHHH
Confidence 99999999999866555443 34 8999999999999855444433210 11 235778889999998644
Q ss_pred ch----hhhcCc-cccEEeccCCccceecCcccc----cc-cCCcc----ccccccccccccccccchhhhhhhhceecc
Q 043038 157 PT----RFCDLA-ILQILDIADNNLSGAIPNYIN----NV-TGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVS 222 (271)
Q Consensus 157 ~~----~~~~l~-~L~~L~l~~n~l~~~~~~~~~----~~-~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (271)
+. .+...+ +|+.|++++|++++..+..+. .+ +.|+. .|.+...+..
T Consensus 155 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~-------------------- 214 (362)
T 3goz_A 155 SDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA-------------------- 214 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH--------------------
T ss_pred HHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHH--------------------
Confidence 43 345555 999999999999865554333 22 35554 4444432111
Q ss_pred ccchhhHHHH-HhhHhhhhhcCCccccccc----HhhhccCCCCEEEccCCC
Q 043038 223 REEVVEYNEI-LNLVMVTIVSRNDLLKNVP----LEVRNLKATQSLNFSHNT 269 (271)
Q Consensus 223 ~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~l~~n~ 269 (271)
.++..+.. .++|+.|++++|.+.+..+ ..+..+++|+.|++++|.
T Consensus 215 --~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 215 --ELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp --HHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred --HHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 12222233 3589999999999987554 344678999999999987
No 96
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=5.6e-19 Score=150.23 Aligned_cols=153 Identities=21% Similarity=0.186 Sum_probs=109.8
Q ss_pred cEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccC
Q 043038 11 LFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSN 90 (271)
Q Consensus 11 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 90 (271)
+.++++++.+...+......++.|++++|.++...+..+. ..+++|++|++++|.++...+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~---~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTP---TRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSS---SCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhh---hcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 5788888888764333345788888888888764333332 0478888888888888855666788888888888888
Q ss_pred CcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhh---hcCcccc
Q 043038 91 NKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRF---CDLAILQ 167 (271)
Q Consensus 91 n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~---~~l~~L~ 167 (271)
|+++...+..|..+++|+.|++++|.+.+..+..+..+++ |+.|++++|.+++..+..| ..+++|+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~-----------L~~L~L~~N~l~~l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ-----------LQKLYLSQNQISRFPVELIKDGNKLPKLM 166 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT-----------CCEEECCSSCCCSCCGGGTC----CTTCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCccc-----------CCEEECCCCcCCeeCHHHhcCcccCCcCC
Confidence 8888666667788888888888888887555556655554 4455588888875444444 5678888
Q ss_pred EEeccCCccc
Q 043038 168 ILDIADNNLS 177 (271)
Q Consensus 168 ~L~l~~n~l~ 177 (271)
.|++++|+++
T Consensus 167 ~L~L~~N~l~ 176 (361)
T 2xot_A 167 LLDLSSNKLK 176 (361)
T ss_dssp EEECCSSCCC
T ss_pred EEECCCCCCC
Confidence 8888888887
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=9.6e-19 Score=144.45 Aligned_cols=125 Identities=26% Similarity=0.265 Sum_probs=57.0
Q ss_pred CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCc
Q 043038 28 SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFL 107 (271)
Q Consensus 28 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 107 (271)
+++++.|++++|.++. ++. +..+++|++|++++|.+++ .+. +..+++|++|++++|.++. ++ .+..+++|
T Consensus 45 l~~L~~L~l~~~~i~~-~~~-----~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L 114 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKS-VQG-----IQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKL 114 (291)
T ss_dssp HHTCCEEECTTSCCCC-CTT-----GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTC
T ss_pred cCcccEEEccCCCccc-Chh-----HhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCC
Confidence 3455555555555443 211 2224555555555555542 222 4455555555555555542 22 24455555
Q ss_pred cEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccc
Q 043038 108 VWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177 (271)
Q Consensus 108 ~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 177 (271)
+.|++++|.+.+ + ..+..+ ++|+.|++++|.+++. ..+..+++|+.|++++|+++
T Consensus 115 ~~L~L~~n~i~~-~-~~l~~l-----------~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 115 KSLSLEHNGISD-I-NGLVHL-----------PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp CEEECTTSCCCC-C-GGGGGC-----------TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred CEEECCCCcCCC-C-hhhcCC-----------CCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence 555555555442 1 122222 2333344555555432 34445555555555555554
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.77 E-value=1.1e-19 Score=152.77 Aligned_cols=218 Identities=14% Similarity=0.167 Sum_probs=154.0
Q ss_pred cccEEECcCCCCCCCccccC--CCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCC-CCccccCCCCCCE
Q 043038 9 QLLFRSLDSNNMSGLLPLIS--SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGE-LPDCWMSDQNLKI 85 (271)
Q Consensus 9 ~L~~L~l~~n~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~ 85 (271)
.++.++++++.+....-..+ ++++.+++++|.+.+..+. +..+++|++|++++|.++.. ++..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~-----~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAE-----HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCS-----CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCCHHHHHhhhhccceEEEcCCccccccchh-----hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 46788888887763221223 6888899999888775444 22478899999999888744 6677788889999
Q ss_pred EEccCCcccccCCcccccCCCccEEEccCC-ccccc-cCccccCCCCccEEecCCCCcccEEEeccC-ccCCC-Cchhhh
Q 043038 86 LKLSNNKFIGNLPNSFGSLAFLVWLDLGKN-RLFGT-IPATLKNCTALESLDVERFSRMVVLNLRSN-KFHGP-LPTRFC 161 (271)
Q Consensus 86 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n-~l~~~-~~~~~~ 161 (271)
|++++|.+++..+..+..+++|+.|++++| .+++. ++..+..++ +|++|++++| .+++. ++..+.
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~-----------~L~~L~l~~~~~l~~~~~~~~~~ 191 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS-----------RLDELNLSWCFDFTEKHVQVAVA 191 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT-----------TCCEEECCCCTTCCHHHHHHHHH
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC-----------CCCEEcCCCCCCcChHHHHHHHH
Confidence 999998887666777778888999999888 56542 444455444 4556668888 88743 567788
Q ss_pred cCc-cccEEeccCCc--cc-eecCcccccccCCcc----ccc-cccccccccccccchhhhhhhhceeccccchhhHHHH
Q 043038 162 DLA-ILQILDIADNN--LS-GAIPNYINNVTGMVT----TNS-FSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEI 232 (271)
Q Consensus 162 ~l~-~L~~L~l~~n~--l~-~~~~~~~~~~~~L~~----~n~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (271)
.++ +|+.|++++|. ++ +.++..+..+++|+. .+. +.+. .+..+..
T Consensus 192 ~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~--------------------------~~~~l~~ 245 (336)
T 2ast_B 192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND--------------------------CFQEFFQ 245 (336)
T ss_dssp HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG--------------------------GGGGGGG
T ss_pred hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHH--------------------------HHHHHhC
Confidence 899 99999999994 44 345566666776666 233 2221 1112245
Q ss_pred HhhHhhhhhcCCc-ccccccHhhhccCCCCEEEccCC
Q 043038 233 LNLVMVTIVSRND-LLKNVPLEVRNLKATQSLNFSHN 268 (271)
Q Consensus 233 ~~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n 268 (271)
+++|+.|++++|. +.+.....+..+++|+.|++++|
T Consensus 246 l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 246 LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 6889999999995 44444456888999999999988
No 99
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=5e-18 Score=144.33 Aligned_cols=155 Identities=27% Similarity=0.240 Sum_probs=76.6
Q ss_pred ccEEECcCCCCCCCcccc----CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCE
Q 043038 10 LLFRSLDSNNMSGLLPLI----SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKI 85 (271)
Q Consensus 10 L~~L~l~~n~~~~~~~~~----~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 85 (271)
++.|++++|.+.+..+.. +++|++|++++|.++...+..+ ..+++|++|++++|.++...+..|..+++|+.
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF----VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV 116 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTT----TTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhc----cCCCCCCEEECCCCcCCcCCHHHhCCCcCCCE
Confidence 555566666555443332 3455566666665554222222 23555666666666555334444555555666
Q ss_pred EEccCCcccccCCcccccCCCccEEEccCCccccccCcccc-CCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCc
Q 043038 86 LKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLK-NCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLA 164 (271)
Q Consensus 86 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~-~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 164 (271)
|++++|+++...+..|..+++|+.|++++|.+. .+|..+. .+ ..+++|+.|++++|.+++..+..+..++
T Consensus 117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~--------~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 187 (361)
T 2xot_A 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDG--------NKLPKLMLLDLSSNKLKKLPLTDLQKLP 187 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC------------CTTCCEEECCSSCCCCCCHHHHHHSC
T ss_pred EECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCc--------ccCCcCCEEECCCCCCCccCHHHhhhcc
Confidence 666666555444555555555666666665555 2333221 00 1123344444555555544344455554
Q ss_pred c--ccEEeccCCccc
Q 043038 165 I--LQILDIADNNLS 177 (271)
Q Consensus 165 ~--L~~L~l~~n~l~ 177 (271)
. ++.+++++|.+.
T Consensus 188 ~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 188 AWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHHTTEECCSSCEE
T ss_pred HhhcceEEecCCCcc
Confidence 3 245555555543
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=132.50 Aligned_cols=139 Identities=20% Similarity=0.220 Sum_probs=104.1
Q ss_pred CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCC-ccccCCCCCCEEEccCCcccccCCcccccCCCcc
Q 043038 30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELP-DCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLV 108 (271)
Q Consensus 30 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 108 (271)
.-+.+++++|.++. +|..++ ..+++|++++|.++...+ ..|..+++|++|++++|++++..+..|..+++|+
T Consensus 12 ~~~~l~~s~n~l~~-iP~~~~------~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 84 (220)
T 2v70_A 12 EGTTVDCSNQKLNK-IPEHIP------QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVN 84 (220)
T ss_dssp ETTEEECCSSCCSS-CCSCCC------TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCCEeEeCCCCccc-CccCCC------CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCC
Confidence 44688888888875 665443 356889999998885433 4578888999999999988866666788888899
Q ss_pred EEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceecCccccc
Q 043038 109 WLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINN 186 (271)
Q Consensus 109 ~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 186 (271)
.|++++|.+.+..+..+..+++ |++|++++|.+++..|..|..+++|+.|++++|++++..|..+..
T Consensus 85 ~L~Ls~N~l~~~~~~~~~~l~~-----------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 151 (220)
T 2v70_A 85 EILLTSNRLENVQHKMFKGLES-----------LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151 (220)
T ss_dssp EEECCSSCCCCCCGGGGTTCSS-----------CCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTT
T ss_pred EEECCCCccCccCHhHhcCCcC-----------CCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcC
Confidence 9999999888555555655554 445558888888777788888888888999888888555555443
No 101
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=1.9e-19 Score=162.49 Aligned_cols=185 Identities=15% Similarity=0.104 Sum_probs=117.5
Q ss_pred CCCcccEEECcCCCCCCCc-------cccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCcccc
Q 043038 6 KFTQLLFRSLDSNNMSGLL-------PLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWM 78 (271)
Q Consensus 6 ~~~~L~~L~l~~n~~~~~~-------~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 78 (271)
.+++|++|++++|.+.+.. +..+++|+.|++++|.+++.....+...+.++++|++|++++|.+. .++..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHh
Confidence 5678888888888775542 2235788888888888764333445555555788888888888776 3455555
Q ss_pred CCCCCCEEEccC---------------------------CcccccCCcccccCCCccEEEccCCccccccC-ccccCCCC
Q 043038 79 SDQNLKILKLSN---------------------------NKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIP-ATLKNCTA 130 (271)
Q Consensus 79 ~l~~L~~L~l~~---------------------------n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~-~~~~~l~~ 130 (271)
.+++|++|+++. +... .+|..+..+++|+.|++++|.+.+... ..+..+++
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN 319 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence 555666665542 2111 344455667789999998888654333 33567888
Q ss_pred ccEEec-------------CCCCcccEEEecc-----------CccCCC-CchhhhcCccccEEeccCCccceecCcccc
Q 043038 131 LESLDV-------------ERFSRMVVLNLRS-----------NKFHGP-LPTRFCDLAILQILDIADNNLSGAIPNYIN 185 (271)
Q Consensus 131 L~~L~l-------------~~~~~L~~L~l~~-----------n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 185 (271)
|+.|++ ..+++|+.|++++ +.+++. ++.....+++|+.|+++.+.+++..+..+.
T Consensus 320 L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~ 399 (592)
T 3ogk_B 320 LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399 (592)
T ss_dssp CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred CCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence 888877 4467888888883 455432 222234577788888877777654444443
Q ss_pred c-ccCCcc
Q 043038 186 N-VTGMVT 192 (271)
Q Consensus 186 ~-~~~L~~ 192 (271)
. +++|+.
T Consensus 400 ~~~~~L~~ 407 (592)
T 3ogk_B 400 TYLKNLCD 407 (592)
T ss_dssp HHCCSCCE
T ss_pred hhCCCCcE
Confidence 3 444444
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=9.3e-18 Score=132.90 Aligned_cols=137 Identities=22% Similarity=0.284 Sum_probs=107.3
Q ss_pred CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccE
Q 043038 30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVW 109 (271)
Q Consensus 30 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 109 (271)
.-+.++.+++.++. +|..++ +.+++|++++|.++...+..|..+++|++|++++|+++...|..|..+++|+.
T Consensus 12 ~~~~v~c~~~~l~~-iP~~l~------~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~ 84 (220)
T 2v9t_B 12 SNNIVDCRGKGLTE-IPTNLP------ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS 84 (220)
T ss_dssp ETTEEECTTSCCSS-CCSSCC------TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCE
T ss_pred CCCEEEcCCCCcCc-CCCccC------cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCE
Confidence 34678888888875 565433 57899999999998666668888999999999999998777888999999999
Q ss_pred EEccCCccccccCcc-ccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceecCcccc
Q 043038 110 LDLGKNRLFGTIPAT-LKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYIN 185 (271)
Q Consensus 110 l~l~~n~l~~~~~~~-~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 185 (271)
|++++|.++ .+|.. +..++ +|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+.
T Consensus 85 L~Ls~N~l~-~l~~~~f~~l~-----------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 149 (220)
T 2v9t_B 85 LVLYGNKIT-ELPKSLFEGLF-----------SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149 (220)
T ss_dssp EECCSSCCC-CCCTTTTTTCT-----------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred EECCCCcCC-ccCHhHccCCC-----------CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHh
Confidence 999999988 44543 44444 455666899999877788888999999999999998854443333
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=6.1e-18 Score=131.64 Aligned_cols=152 Identities=17% Similarity=0.206 Sum_probs=105.3
Q ss_pred cCCCcccEEECcCCCCCCCcc-ccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCC
Q 043038 5 TKFTQLLFRSLDSNNMSGLLP-LISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNL 83 (271)
Q Consensus 5 ~~~~~L~~L~l~~n~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 83 (271)
+++++|+.|++++|.+..... ..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+..+..+++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~-~~-----~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATN-YN-----PISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSC-CG-----GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCc-ch-----hhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 356678888888887774321 125688888888886653 21 23447888888888888876567777888888
Q ss_pred CEEEccCCcccccCCcccccCCCccEEEccCCc-cccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhc
Q 043038 84 KILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNR-LFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCD 162 (271)
Q Consensus 84 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~-l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 162 (271)
++|++++|++++..+..+..+++|+.|++++|. +. .+| .+..++ +|+.|++++|.+++ ++ .+..
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~-----------~L~~L~l~~n~i~~-~~-~l~~ 179 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLP-----------ELKSLNIQFDGVHD-YR-GIED 179 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCS-----------SCCEEECTTBCCCC-CT-TGGG
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCC-----------CCCEEECCCCCCcC-hH-Hhcc
Confidence 888888888876566777788888888888887 54 444 344443 45566688888874 33 6777
Q ss_pred CccccEEeccCCccc
Q 043038 163 LAILQILDIADNNLS 177 (271)
Q Consensus 163 l~~L~~L~l~~n~l~ 177 (271)
+++|+.|++++|++.
T Consensus 180 l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 180 FPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSCCEEEECBC---
T ss_pred CCCCCEEEeeCcccC
Confidence 888888888888875
No 104
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.75 E-value=6.8e-18 Score=142.93 Aligned_cols=182 Identities=16% Similarity=0.167 Sum_probs=118.3
Q ss_pred cEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCC-CccccCCCCCCE-EEc
Q 043038 11 LFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGEL-PDCWMSDQNLKI-LKL 88 (271)
Q Consensus 11 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~-L~l 88 (271)
+.++.+++.++..+....+++++|++++|.++. +|. ++|.++++|++|++++|.+...+ +.+|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~-i~~---~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRV-IQK---GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSE-ECT---TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCC-cCH---HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 567888888875433334689999999999875 432 23445889999999999875444 456788887665 556
Q ss_pred cCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec--------------CC-CCcccEEEeccCccC
Q 043038 89 SNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV--------------ER-FSRMVVLNLRSNKFH 153 (271)
Q Consensus 89 ~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l--------------~~-~~~L~~L~l~~n~l~ 153 (271)
.+|+++...|..|..+++|+.+++++|.+....+..+....++..+++ .. ...++.|++++|.++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 678888666778888899999999999887443333444444555544 11 124667777777776
Q ss_pred CCCchhhhcCccccEEeccC-CccceecC-cccccccCCcc----cccccc
Q 043038 154 GPLPTRFCDLAILQILDIAD-NNLSGAIP-NYINNVTGMVT----TNSFSR 198 (271)
Q Consensus 154 ~~~~~~~~~l~~L~~L~l~~-n~l~~~~~-~~~~~~~~L~~----~n~~~~ 198 (271)
. ++.......+++.+++.+ |.++ .+| ..+..+++|+. .|.+..
T Consensus 168 ~-i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 168 E-IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp E-ECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCC
T ss_pred C-CChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCc
Confidence 3 444333445677777764 5555 444 34566666655 455554
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1e-17 Score=130.40 Aligned_cols=151 Identities=15% Similarity=0.180 Sum_probs=114.9
Q ss_pred CCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEe
Q 043038 56 TKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLD 135 (271)
Q Consensus 56 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~ 135 (271)
+++|++|++++|.++ .+| .+..+++|++|++++|.++ .. ..+..+++|+.|++++|.+.+..+..+..+++
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~----- 113 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTS----- 113 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTT-----
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cc-hhhhcCCCCCEEEeECCccCcccChhhcCCCC-----
Confidence 678889999999888 666 5788889999999999775 33 46778889999999999888656666655554
Q ss_pred cCCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCc-cceecCcccccccCCccccccccccccccccccchhhhh
Q 043038 136 VERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNN-LSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVIL 214 (271)
Q Consensus 136 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~~n~~~~~~~~~~~~~~~~~~~~ 214 (271)
|++|++++|.+++..+..+..+++|+.|++++|. ++ .++ .+.
T Consensus 114 ------L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~----------------------------- 156 (197)
T 4ezg_A 114 ------LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLK----------------------------- 156 (197)
T ss_dssp ------CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGG-----------------------------
T ss_pred ------CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhc-----------------------------
Confidence 4566688898887678888889999999999987 54 333 222
Q ss_pred hhhceeccccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038 215 MEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271 (271)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 271 (271)
.+++|+.|++++|.+.+ ++ .+..+++|+.|++++|+|.
T Consensus 157 -----------------~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 157 -----------------TLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp -----------------GCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred -----------------CCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 35567889999999865 44 7889999999999999874
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=3.5e-17 Score=130.40 Aligned_cols=133 Identities=25% Similarity=0.229 Sum_probs=104.3
Q ss_pred CCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCcc
Q 043038 29 SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLV 108 (271)
Q Consensus 29 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 108 (271)
+..+.++.+++.++. +|..+ .++|++|++++|.+++..|..|..+++|++|++++|+++...+..|..+++|+
T Consensus 19 Cs~~~v~c~~~~l~~-ip~~~------~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 91 (229)
T 3e6j_A 19 CSGTTVDCRSKRHAS-VPAGI------PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT 91 (229)
T ss_dssp EETTEEECTTSCCSS-CCSCC------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EeCCEeEccCCCcCc-cCCCC------CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcC
Confidence 466788888888875 66543 36889999999999877788888999999999999999855556678899999
Q ss_pred EEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceec
Q 043038 109 WLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAI 180 (271)
Q Consensus 109 ~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 180 (271)
.|++++|.+++..+..+..+++ |+.|++++|.++ .+|..+..+++|+.|++++|++++..
T Consensus 92 ~L~Ls~N~l~~l~~~~~~~l~~-----------L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~ 151 (229)
T 3e6j_A 92 VLDLGTNQLTVLPSAVFDRLVH-----------LKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIP 151 (229)
T ss_dssp EEECCSSCCCCCCTTTTTTCTT-----------CCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCC
T ss_pred EEECCCCcCCccChhHhCcchh-----------hCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccC
Confidence 9999999988443444455544 456668899998 67888888999999999999887433
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=2.6e-17 Score=135.79 Aligned_cols=160 Identities=21% Similarity=0.287 Sum_probs=111.6
Q ss_pred ccCCCcccEEECcCCCCCCCccc-cCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCC
Q 043038 4 LTKFTQLLFRSLDSNNMSGLLPL-ISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQN 82 (271)
Q Consensus 4 ~~~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 82 (271)
+.++++|+.|++++|.+.....- .+++|++|++++|.+++. +. +.++++|++|++++|.++ .++ .+..+++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~-~~-----l~~l~~L~~L~l~~n~l~-~~~-~l~~l~~ 113 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI-KP-----LANLKNLGWLFLDENKVK-DLS-SLKDLKK 113 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC-GG-----GTTCTTCCEEECCSSCCC-CGG-GGTTCTT
T ss_pred hhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCC-cc-----cccCCCCCEEECCCCcCC-CCh-hhccCCC
Confidence 44677888899988888754221 257889999999988763 22 445888999999999887 343 3788888
Q ss_pred CCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec-----------CCCCcccEEEeccCc
Q 043038 83 LKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV-----------ERFSRMVVLNLRSNK 151 (271)
Q Consensus 83 L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l-----------~~~~~L~~L~l~~n~ 151 (271)
|++|++++|+++. + ..+..+++|+.|++++|.+.+ + ..+..+++|+.|++ ..+++|+.|++++|.
T Consensus 114 L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 114 LKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH 189 (291)
T ss_dssp CCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred CCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCc
Confidence 9999999988874 3 457788889999999888874 3 45666666666664 234556666666666
Q ss_pred cCCCCchhhhcCccccEEeccCCccc
Q 043038 152 FHGPLPTRFCDLAILQILDIADNNLS 177 (271)
Q Consensus 152 l~~~~~~~~~~l~~L~~L~l~~n~l~ 177 (271)
+++ ++ .+..+++|+.|++++|.+.
T Consensus 190 i~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 190 ISD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred CCC-Ch-hhccCCCCCEEECcCCccc
Confidence 653 33 3556666666666666655
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=7.5e-18 Score=151.99 Aligned_cols=147 Identities=23% Similarity=0.316 Sum_probs=72.3
Q ss_pred CCCcccEEECcCCCCCCCccc-cCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCC
Q 043038 6 KFTQLLFRSLDSNNMSGLLPL-ISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLK 84 (271)
Q Consensus 6 ~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 84 (271)
++++|+.|++++|.+....+- .+++|+.|++++|.+.+..+ +..+++|+.|++++|.++ .++ .+..+++|+
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~ 112 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP------LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLK 112 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG------GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCC
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh------hccCCCCCEEECcCCCCC-CCh-hhccCCCCC
Confidence 445555555555555432211 14455555555555554222 223555555555555555 222 345555555
Q ss_pred EEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCc
Q 043038 85 ILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLA 164 (271)
Q Consensus 85 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 164 (271)
.|++++|.+.. + +.+..+++|+.|++++|.+.+ + ..+..+ ++|+.|++++|.+++..| +..++
T Consensus 113 ~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l-----------~~L~~L~Ls~N~l~~~~~--l~~l~ 175 (605)
T 1m9s_A 113 SLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLSRL-----------TKLDTLSLEDNQISDIVP--LAGLT 175 (605)
T ss_dssp EEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC-C-GGGGSC-----------TTCSEEECCSSCCCCCGG--GTTCT
T ss_pred EEEecCCCCCC-C-ccccCCCccCEEECCCCccCC-c-hhhccc-----------CCCCEEECcCCcCCCchh--hccCC
Confidence 55555555552 2 235555555555555555542 1 222222 233344455555553333 55555
Q ss_pred cccEEeccCCccc
Q 043038 165 ILQILDIADNNLS 177 (271)
Q Consensus 165 ~L~~L~l~~n~l~ 177 (271)
+|+.|++++|.++
T Consensus 176 ~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 176 KLQNLYLSKNHIS 188 (605)
T ss_dssp TCCEEECCSSCCC
T ss_pred CCCEEECcCCCCC
Confidence 6666666665554
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=8.7e-18 Score=151.57 Aligned_cols=144 Identities=23% Similarity=0.230 Sum_probs=87.6
Q ss_pred ccEEECcCCCCCCCcccc-CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEc
Q 043038 10 LLFRSLDSNNMSGLLPLI-SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKL 88 (271)
Q Consensus 10 L~~L~l~~n~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 88 (271)
+..+.+..+.+.+..+.. +++|+.|++++|.+.. ++. +..+++|+.|++++|.+++. +. +..+++|+.|++
T Consensus 23 l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~-l~~-----l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~L 94 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKS-VQG-----IQYLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCC-CTT-----GGGCTTCCEEECTTSCCCCC-GG-GGGCTTCCEEEC
T ss_pred HHHHhccCCCcccccchhcCCCCCEEECcCCCCCC-ChH-----HccCCCCCEEEeeCCCCCCC-hh-hccCCCCCEEEC
Confidence 334455555555443322 5677777777777654 221 33367777777777777633 33 667777777777
Q ss_pred cCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccE
Q 043038 89 SNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQI 168 (271)
Q Consensus 89 ~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 168 (271)
++|.+.. ++ .+..+++|+.|++++|.+.+ + +.+..+ ++|+.|++++|.+++. ..+..+++|+.
T Consensus 95 s~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l-----------~~L~~L~Ls~N~l~~l--~~l~~l~~L~~ 157 (605)
T 1m9s_A 95 DENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHL-----------PQLESLYLGNNKITDI--TVLSRLTKLDT 157 (605)
T ss_dssp CSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGC-----------TTCSEEECCSSCCCCC--GGGGSCTTCSE
T ss_pred cCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCC-----------CccCEEECCCCccCCc--hhhcccCCCCE
Confidence 7777763 33 46667777777777777663 2 223333 3444555777777643 45667777777
Q ss_pred EeccCCccce
Q 043038 169 LDIADNNLSG 178 (271)
Q Consensus 169 L~l~~n~l~~ 178 (271)
|++++|.+.+
T Consensus 158 L~Ls~N~l~~ 167 (605)
T 1m9s_A 158 LSLEDNQISD 167 (605)
T ss_dssp EECCSSCCCC
T ss_pred EECcCCcCCC
Confidence 7777777764
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.70 E-value=1.5e-16 Score=142.21 Aligned_cols=147 Identities=24% Similarity=0.340 Sum_probs=112.0
Q ss_pred CCcccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEE
Q 043038 7 FTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKIL 86 (271)
Q Consensus 7 ~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 86 (271)
+++|+.|++++|.+.. +|..+++|++|++++|.+++ +|. ++ .+|++|++++|.+++ +|. .+++|+.|
T Consensus 79 ~~~L~~L~Ls~N~l~~-ip~~l~~L~~L~Ls~N~l~~-ip~-l~------~~L~~L~Ls~N~l~~-lp~---~l~~L~~L 145 (571)
T 3cvr_A 79 PPQITVLEITQNALIS-LPELPASLEYLDACDNRLST-LPE-LP------ASLKHLDVDNNQLTM-LPE---LPALLEYI 145 (571)
T ss_dssp CTTCSEEECCSSCCSC-CCCCCTTCCEEECCSSCCSC-CCC-CC------TTCCEEECCSSCCSC-CCC---CCTTCCEE
T ss_pred cCCCCEEECcCCCCcc-cccccCCCCEEEccCCCCCC-cch-hh------cCCCEEECCCCcCCC-CCC---cCccccEE
Confidence 3679999999999984 55667899999999999987 665 33 289999999999994 666 67899999
Q ss_pred EccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccc
Q 043038 87 KLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAIL 166 (271)
Q Consensus 87 ~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 166 (271)
++++|.+++ +|. .+++|+.|++++|.+++ +|. +. + +|+.|++++|.++ .+|. +.. +|
T Consensus 146 ~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~-----------~L~~L~Ls~N~L~-~lp~-~~~--~L 202 (571)
T 3cvr_A 146 NADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--E-----------SLEALDVSTNLLE-SLPA-VPV--RN 202 (571)
T ss_dssp ECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--T-----------TCCEEECCSSCCS-SCCC-CC-----
T ss_pred eCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--C-----------CCCEEECcCCCCC-chhh-HHH--hh
Confidence 999999984 555 57899999999999984 666 43 3 4556668888887 4555 443 56
Q ss_pred -------cEEeccCCccceecCcccccccCC
Q 043038 167 -------QILDIADNNLSGAIPNYINNVTGM 190 (271)
Q Consensus 167 -------~~L~l~~n~l~~~~~~~~~~~~~L 190 (271)
+.|++++|.++ .+|..+..++.|
T Consensus 203 ~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L 232 (571)
T 3cvr_A 203 HHSEETEIFFRCRENRIT-HIPENILSLDPT 232 (571)
T ss_dssp -----CCEEEECCSSCCC-CCCGGGGGSCTT
T ss_pred hcccccceEEecCCCcce-ecCHHHhcCCCC
Confidence 88888888887 566655444433
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=5.9e-17 Score=131.76 Aligned_cols=146 Identities=20% Similarity=0.288 Sum_probs=91.0
Q ss_pred CCcccEEECcCCCCCCCccc-cCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCE
Q 043038 7 FTQLLFRSLDSNNMSGLLPL-ISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKI 85 (271)
Q Consensus 7 ~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 85 (271)
+.++..++++++.+.+..+. .+++|++|++++|.++. ++ .+..+++|++|++++|.+++ ++. +..+++|++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~-l~-----~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~ 89 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS-LA-----GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC-CT-----TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCE
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc-ch-----HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCE
Confidence 44555666777766654321 25677777777777764 33 23347777777777777773 333 677777777
Q ss_pred EEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCcc
Q 043038 86 LKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAI 165 (271)
Q Consensus 86 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 165 (271)
|++++|++++ ++. +.. ++|+.|++++|.+++ ++ .+..+ ++|+.|++++|.+++ ++ .+..+++
T Consensus 90 L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l-----------~~L~~L~Ls~N~i~~-~~-~l~~l~~ 151 (263)
T 1xeu_A 90 LSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHL-----------KNLEILSIRNNKLKS-IV-MLGFLSK 151 (263)
T ss_dssp EECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTC-----------TTCCEEECTTSCCCB-CG-GGGGCTT
T ss_pred EECCCCccCC-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCc-----------ccccEEECCCCcCCC-Ch-HHccCCC
Confidence 7777777763 333 222 677777777777763 32 23333 344555577777764 33 5667777
Q ss_pred ccEEeccCCccce
Q 043038 166 LQILDIADNNLSG 178 (271)
Q Consensus 166 L~~L~l~~n~l~~ 178 (271)
|+.|++++|++++
T Consensus 152 L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 152 LEVLDLHGNEITN 164 (263)
T ss_dssp CCEEECTTSCCCB
T ss_pred CCEEECCCCcCcc
Confidence 7777777777763
No 112
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.68 E-value=2.8e-18 Score=154.87 Aligned_cols=183 Identities=16% Similarity=0.136 Sum_probs=109.7
Q ss_pred CCCcccEEECcCCCCCCCcccc----CC-CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCC----CCcc
Q 043038 6 KFTQLLFRSLDSNNMSGLLPLI----SS-NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGE----LPDC 76 (271)
Q Consensus 6 ~~~~L~~L~l~~n~~~~~~~~~----~~-~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~ 76 (271)
++++|++|++++|.+.+..+.. ++ +|++|++++|.. ..+..+......+++|++|++++|.+++. ++..
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~--~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 187 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG--FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE--EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC--cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence 5667777777777665443222 22 377777777662 11222332233478888888888877643 2334
Q ss_pred ccCCCCCCEEEccCCcccc----cCCcccccCCCccEEEccCCccccccCccccCCCCccEEecC---------------
Q 043038 77 WMSDQNLKILKLSNNKFIG----NLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVE--------------- 137 (271)
Q Consensus 77 ~~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~--------------- 137 (271)
+..+++|++|++++|.+++ .++..+..+++|+.|++++|.+. .++..+..+++|+.++++
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 4567788888888887762 23334556788888888888776 356666667777766652
Q ss_pred -CCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceecC-cccccccCCcc
Q 043038 138 -RFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIP-NYINNVTGMVT 192 (271)
Q Consensus 138 -~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~ 192 (271)
.+++|+.++++++.. +.+|..+..+++|+.|++++|.+++... ..+..+++|+.
T Consensus 267 ~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~ 322 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV 322 (592)
T ss_dssp CCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCE
T ss_pred hccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCE
Confidence 334566666665433 2455566666777777777776543222 22344444444
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=3.3e-16 Score=127.33 Aligned_cols=151 Identities=25% Similarity=0.277 Sum_probs=121.0
Q ss_pred CccCCCcccEEECcCCCCCCCcc-ccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCC
Q 043038 3 NLTKFTQLLFRSLDSNNMSGLLP-LISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQ 81 (271)
Q Consensus 3 ~~~~~~~L~~L~l~~n~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 81 (271)
.+.++++|+.|++++|.+..... ..+++|++|++++|.+++ ++. +..+++|++|++++|+++ .++.. .. +
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~-~~~-----l~~l~~L~~L~L~~N~l~-~l~~~-~~-~ 106 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISD-LSP-----LKDLTKLEELSVNRNRLK-NLNGI-PS-A 106 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG-----GTTCSSCCEEECCSSCCS-CCTTC-CC-S
T ss_pred chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCC-Chh-----hccCCCCCEEECCCCccC-CcCcc-cc-C
Confidence 46678999999999999885432 126799999999999987 332 445999999999999998 45443 33 8
Q ss_pred CCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhh
Q 043038 82 NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFC 161 (271)
Q Consensus 82 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~ 161 (271)
+|+.|++++|++++ .+ .+..+++|+.|++++|.+++ ++ .+..++ +|+.|++++|.+++. ..+.
T Consensus 107 ~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~-----------~L~~L~L~~N~i~~~--~~l~ 169 (263)
T 1xeu_A 107 CLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLS-----------KLEVLDLHGNEITNT--GGLT 169 (263)
T ss_dssp SCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCT-----------TCCEEECTTSCCCBC--TTST
T ss_pred cccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCC-----------CCCEEECCCCcCcch--HHhc
Confidence 99999999999984 43 58899999999999999984 43 444444 556777999999865 6788
Q ss_pred cCccccEEeccCCcccee
Q 043038 162 DLAILQILDIADNNLSGA 179 (271)
Q Consensus 162 ~l~~L~~L~l~~n~l~~~ 179 (271)
.+++|+.|++++|.+.+.
T Consensus 170 ~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 170 RLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TCCCCCEEEEEEEEEECC
T ss_pred cCCCCCEEeCCCCcccCC
Confidence 899999999999999743
No 114
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=2.3e-17 Score=152.09 Aligned_cols=161 Identities=24% Similarity=0.237 Sum_probs=90.2
Q ss_pred CcccEEECcCCCCCCCccccCCCccEEEccCCccccccc-----hhhhhhccCCCcccEEEccCcccCCCCCccccCCCC
Q 043038 8 TQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSIS-----HFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQN 82 (271)
Q Consensus 8 ~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 82 (271)
++++.|++.+|.+...... .++.++++.+.+..... ...++.+..++.|+.|++++|.+. .+|..+..+++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~---~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQA---LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF 248 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred CccceEEeeCCCCCcchhh---HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence 3466677777766653222 23333444443322110 012233445788888888888887 66666668888
Q ss_pred CCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhc
Q 043038 83 LKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCD 162 (271)
Q Consensus 83 L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 162 (271)
|++|++++|.++ .+|..+..+++|+.|++++|.++ .+|..++.+++|+ +|++++|.++ .+|..|..
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~-----------~L~L~~N~l~-~lp~~~~~ 314 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK-----------YFYFFDNMVT-TLPWEFGN 314 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCS-----------EEECCSSCCC-CCCSSTTS
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCC-----------EEECCCCCCC-ccChhhhc
Confidence 888888888888 77777888888888888888888 6777776665544 5557888886 66777888
Q ss_pred CccccEEeccCCccceecCccccc
Q 043038 163 LAILQILDIADNNLSGAIPNYINN 186 (271)
Q Consensus 163 l~~L~~L~l~~n~l~~~~~~~~~~ 186 (271)
+++|+.|++++|.+++.+|..+..
T Consensus 315 l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 315 LCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp CTTCCCEECTTSCCCSHHHHHHHH
T ss_pred CCCccEEeCCCCccCCCChHHHhh
Confidence 888888888888887666665543
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=4.6e-16 Score=117.78 Aligned_cols=137 Identities=26% Similarity=0.210 Sum_probs=108.3
Q ss_pred CCCccEEEccCCccc-cccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCC
Q 043038 28 SSNLVYLGLSDNSFL-GSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAF 106 (271)
Q Consensus 28 ~~~L~~L~l~~n~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 106 (271)
.++++.|++++|.++ +.+|..+. .+++|++|++++|.++.. ..+..+++|++|++++|++++.+|..+..+++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~----~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTA----EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCG----GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred cccCCEEECCCCCCChhhHHHHHH----hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence 368999999999987 44555443 488999999999999844 77888999999999999998667777777999
Q ss_pred ccEEEccCCccccccC--ccccCCCCccEEecCCCCcccEEEeccCccCCCCc---hhhhcCccccEEeccCCccceecC
Q 043038 107 LVWLDLGKNRLFGTIP--ATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLP---TRFCDLAILQILDIADNNLSGAIP 181 (271)
Q Consensus 107 L~~l~l~~n~l~~~~~--~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~ 181 (271)
|+.|++++|.+.+ ++ ..+..++ +|+.|++++|.+++..+ ..+..+++|+.|++++|.+. ..|
T Consensus 97 L~~L~Ls~N~l~~-~~~~~~l~~l~-----------~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~ 163 (168)
T 2ell_A 97 LTHLNLSGNKLKD-ISTLEPLKKLE-----------CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAP 163 (168)
T ss_dssp CCEEECBSSSCCS-SGGGGGGSSCS-----------CCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCC
T ss_pred CCEEeccCCccCc-chhHHHHhcCC-----------CCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcc
Confidence 9999999999884 33 4454444 45567799999986544 47889999999999999887 555
Q ss_pred cc
Q 043038 182 NY 183 (271)
Q Consensus 182 ~~ 183 (271)
..
T Consensus 164 ~~ 165 (168)
T 2ell_A 164 DS 165 (168)
T ss_dssp SS
T ss_pred cc
Confidence 43
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=9.6e-16 Score=118.66 Aligned_cols=132 Identities=23% Similarity=0.224 Sum_probs=91.9
Q ss_pred cEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccC
Q 043038 11 LFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSN 90 (271)
Q Consensus 11 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 90 (271)
+.++++++.+...+.....++++|++++|.+++..+.. .+..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDG---LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCcc---ccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67788888876443333457888888888877633321 123477888888888888866677788888888888888
Q ss_pred CcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCC
Q 043038 91 NKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPL 156 (271)
Q Consensus 91 n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~ 156 (271)
|++++..+..|..+++|+.|++++|.+++..|..+..+++ |++|++++|.+++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-----------L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS-----------LTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTT-----------CCEEECTTCCBCCSG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCC-----------CCEEEeCCCCccCcC
Confidence 8887666666777888888888888877666666655544 345557777776543
No 117
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=4.6e-16 Score=131.65 Aligned_cols=100 Identities=16% Similarity=0.106 Sum_probs=76.0
Q ss_pred CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCC-cccccCCCcc
Q 043038 30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLP-NSFGSLAFLV 108 (271)
Q Consensus 30 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~ 108 (271)
.-++++-+++.++. +|..++ +++++|++++|+|+...+.+|.++++|++|++++|++...++ ..|.+++++.
T Consensus 10 ~~~~v~C~~~~Lt~-iP~~l~------~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~ 82 (350)
T 4ay9_X 10 SNRVFLCQESKVTE-IPSDLP------RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH 82 (350)
T ss_dssp ETTEEEEESTTCCS-CCTTCC------TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCC
T ss_pred eCCEEEecCCCCCc-cCcCcC------CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhh
Confidence 34667888888875 776543 579999999999995445689999999999999999864454 5678888877
Q ss_pred E-EEccCCccccccCccccCCCCccEEec
Q 043038 109 W-LDLGKNRLFGTIPATLKNCTALESLDV 136 (271)
Q Consensus 109 ~-l~l~~n~l~~~~~~~~~~l~~L~~L~l 136 (271)
+ +.+..|.+....|..+..+++|+.+++
T Consensus 83 ~~l~~~~N~l~~l~~~~f~~l~~L~~L~l 111 (350)
T 4ay9_X 83 EIRIEKANNLLYINPEAFQNLPNLQYLLI 111 (350)
T ss_dssp EEEEEEETTCCEECTTSBCCCTTCCEEEE
T ss_pred hhhcccCCcccccCchhhhhccccccccc
Confidence 6 456678888555667777777766654
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.64 E-value=1.2e-15 Score=118.15 Aligned_cols=132 Identities=23% Similarity=0.262 Sum_probs=110.4
Q ss_pred CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCc-cccCCCCCCEEEccCCcccccCCcccccCCCcc
Q 043038 30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPD-CWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLV 108 (271)
Q Consensus 30 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 108 (271)
.-+++++++|.++. +|..++ ..+++|++++|.++...+. .|..+++|++|++++|.+++..|..|..+++|+
T Consensus 9 ~~~~l~~s~~~l~~-ip~~~~------~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 81 (192)
T 1w8a_A 9 EGTTVDCTGRGLKE-IPRDIP------LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ 81 (192)
T ss_dssp ETTEEECTTSCCSS-CCSCCC------TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CCCEEEcCCCCcCc-CccCCC------CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC
Confidence 45789999999965 665443 3899999999999855443 488999999999999999977788999999999
Q ss_pred EEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCcccee
Q 043038 109 WLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGA 179 (271)
Q Consensus 109 ~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 179 (271)
.|++++|.+++..+..+..+++ |++|++++|.+++..|..+..+++|+.|++++|.+.+.
T Consensus 82 ~L~Ls~N~l~~~~~~~~~~l~~-----------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 82 ELQLGENKIKEISNKMFLGLHQ-----------LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp EEECCSCCCCEECSSSSTTCTT-----------CCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred EEECCCCcCCccCHHHhcCCCC-----------CCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 9999999999666655665554 55666999999988888999999999999999998754
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=7.3e-15 Score=113.78 Aligned_cols=128 Identities=20% Similarity=0.198 Sum_probs=83.5
Q ss_pred cEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccC
Q 043038 11 LFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSN 90 (271)
Q Consensus 11 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 90 (271)
+.++++++.+...++...+++++|++++|.++. +|..+ ..+++|++|++++|.++...+..|.++++|++|++++
T Consensus 13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~-ip~~~----~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTL-VPKEL----SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSSCCSCCCTTCCEEECCSSCCCS-CCGGG----GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCch-hHHHh----hcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 567777777765433334577778888777763 55333 3477777778877777755566677777777777777
Q ss_pred CcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCC
Q 043038 91 NKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHG 154 (271)
Q Consensus 91 n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~ 154 (271)
|+++...+..|..+++|+.|++++|.++...+..+..+++ |+.|++++|.+..
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-----------L~~L~L~~N~~~C 140 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA-----------LSHLAIGANPLYC 140 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT-----------CCEEECCSSCEEC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCcc-----------ccEEEeCCCCeec
Confidence 7777655666777777777777777777332223444433 3444566666653
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=9.8e-18 Score=150.27 Aligned_cols=193 Identities=20% Similarity=0.225 Sum_probs=118.6
Q ss_pred cCCCcccEEECcCCCCCCCcccc---CCCccEEEccCCc-------------cccccchhhhhhccCCCcccEEE-ccCc
Q 043038 5 TKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNS-------------FLGSISHFLCDKINETKRLEALK-LNDN 67 (271)
Q Consensus 5 ~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~-------------~~~~~~~~~~~~~~~~~~L~~L~-l~~n 67 (271)
...++|+.|++++|.+. .+|.. +++|+.|++++|. ..+..|.. +..+++|+.|+ ++.|
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~----l~~l~~L~~L~~l~~n 420 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET----LQYFSTLKAVDPMRAA 420 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHH----HHHHHHHHHHCGGGHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHH----HHHHHhcccCcchhhc
Confidence 45667777788877775 44544 3467777776554 22222222 22355566665 4444
Q ss_pred ccCCCCCc------cccC--CCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCC
Q 043038 68 YLQGELPD------CWMS--DQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERF 139 (271)
Q Consensus 68 ~l~~~~~~------~~~~--l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~ 139 (271)
.+. .++. .+.. ...|+.|++++|.++ .+|. +..+++|+.|++++|.++ .+|..++.+++|+
T Consensus 421 ~~~-~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~------- 489 (567)
T 1dce_A 421 YLD-DLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLE------- 489 (567)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCC-------
T ss_pred ccc-hhhhhhhhcccccccCccCceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCC-------
Confidence 322 1110 0000 124777888888877 3555 777788888888888877 6777666655444
Q ss_pred CcccEEEeccCccCCCCchhhhcCccccEEeccCCccceec-CcccccccCCccccccccccccccccccchhhhhhhhc
Q 043038 140 SRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAI-PNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKA 218 (271)
Q Consensus 140 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~~n~~~~~~~~~~~~~~~~~~~~~~~~ 218 (271)
.|++++|.+++ +| .+..+++|+.|++++|++++.. |..+.
T Consensus 490 ----~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~--------------------------------- 530 (567)
T 1dce_A 490 ----VLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLV--------------------------------- 530 (567)
T ss_dssp ----EEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGG---------------------------------
T ss_pred ----EEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHh---------------------------------
Confidence 44577788774 55 6777788888888888877443 55444
Q ss_pred eeccccchhhHHHHHhhHhhhhhcCCccccccc---HhhhccCCCCEEEc
Q 043038 219 SVVSREEVVEYNEILNLVMVTIVSRNDLLKNVP---LEVRNLKATQSLNF 265 (271)
Q Consensus 219 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l 265 (271)
.+++|+.|++++|.+.+..| ..+..+++|+.|++
T Consensus 531 -------------~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 531 -------------SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -------------GCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -------------cCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 34556778888888876433 23455888888874
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=5.3e-15 Score=114.57 Aligned_cols=129 Identities=24% Similarity=0.268 Sum_probs=108.6
Q ss_pred CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccE
Q 043038 30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVW 109 (271)
Q Consensus 30 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 109 (271)
.-++++.+++.++. +|..+ .+.+++|++++|.++ .+|..|..+++|+.|++++|.++...+..|..+++|+.
T Consensus 11 ~~~~l~~~~~~l~~-ip~~~------~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~ 82 (193)
T 2wfh_A 11 LDTVVRCSNKGLKV-LPKGI------PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT 82 (193)
T ss_dssp ETTEEECTTSCCSS-CCSCC------CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCEEEcCCCCCCc-CCCCC------CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCE
Confidence 34688999999875 66543 257999999999998 78889999999999999999999777778999999999
Q ss_pred EEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccc
Q 043038 110 LDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177 (271)
Q Consensus 110 l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 177 (271)
|++++|.+++..+..+..+++ |+.|++++|.++...+..|..+++|+.+++++|.+.
T Consensus 83 L~Ls~N~l~~i~~~~f~~l~~-----------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 83 LILSYNRLRCIPPRTFDGLKS-----------LRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCTT-----------CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EECCCCccCEeCHHHhCCCCC-----------CCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 999999999655556666554 556669999998666667889999999999999886
No 122
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.61 E-value=8.9e-17 Score=145.03 Aligned_cols=40 Identities=13% Similarity=0.034 Sum_probs=23.5
Q ss_pred HHHhhHhhhhhcCCcccccccH-hhhccCCCCEEEccCCCC
Q 043038 231 EILNLVMVTIVSRNDLLKNVPL-EVRNLKATQSLNFSHNTF 270 (271)
Q Consensus 231 ~~~~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~i 270 (271)
..+++|+.|++++|.+++..+. .+..+++|+.|++++|.+
T Consensus 478 ~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 478 SGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred hcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 4456666666666666443333 334566666666666654
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=1.8e-15 Score=112.11 Aligned_cols=127 Identities=24% Similarity=0.173 Sum_probs=77.4
Q ss_pred CCccEEEccCCccc-cccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCc
Q 043038 29 SNLVYLGLSDNSFL-GSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFL 107 (271)
Q Consensus 29 ~~L~~L~l~~n~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 107 (271)
++++.|++++|.++ +.+|..+ ..+++|++|++++|.++.. ..+..+++|++|++++|.+++.+|..+..+++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~----~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLT----DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCC----TTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred ccCeEEEccCCcCChhHHHHHH----hhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 45666666666665 3344332 2366777777777777633 556667777777777777765456556567777
Q ss_pred cEEEccCCccccc-cCccccCCCCccEEecCCCCcccEEEeccCccCCCCc---hhhhcCccccEEecc
Q 043038 108 VWLDLGKNRLFGT-IPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLP---TRFCDLAILQILDIA 172 (271)
Q Consensus 108 ~~l~l~~n~l~~~-~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~ 172 (271)
+.+++++|.+.+. .+..+..++ +|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~-----------~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLE-----------NLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCT-----------TCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEECCCCcCCChHHHHHHhhCC-----------CCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777777776632 124444443 34455577777765444 356677777777765
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=4.7e-15 Score=112.16 Aligned_cols=131 Identities=21% Similarity=0.174 Sum_probs=105.5
Q ss_pred CCCcccEEECcCCCCC-CCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCC
Q 043038 6 KFTQLLFRSLDSNNMS-GLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQ 81 (271)
Q Consensus 6 ~~~~L~~L~l~~n~~~-~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 81 (271)
..++++.|++++|.+. +.+|.. +++|++|++++|.++.. ..+..+++|++|++++|.++...|..+..++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC------SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh------hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 4578999999999998 566655 56999999999999863 4455699999999999999966888888899
Q ss_pred CCCEEEccCCcccccC-CcccccCCCccEEEccCCccccccC---ccccCCCCccEEecCCCCcccEEEeccCccC
Q 043038 82 NLKILKLSNNKFIGNL-PNSFGSLAFLVWLDLGKNRLFGTIP---ATLKNCTALESLDVERFSRMVVLNLRSNKFH 153 (271)
Q Consensus 82 ~L~~L~l~~n~~~~~~-~~~~~~l~~L~~l~l~~n~l~~~~~---~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~ 153 (271)
+|++|++++|.+++.. +..+..+++|+.+++++|.+.+..+ ..+..+++|+ +|++++|.++
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~-----------~L~l~~n~~~ 160 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT-----------YLDGYDREDQ 160 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCC-----------EETTEETTSC
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCc-----------EecCCCCChh
Confidence 9999999999998432 2678899999999999999984333 2566566555 5557888776
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=1.4e-14 Score=110.56 Aligned_cols=105 Identities=23% Similarity=0.186 Sum_probs=60.2
Q ss_pred ccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEcc
Q 043038 10 LLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLS 89 (271)
Q Consensus 10 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 89 (271)
.+.++++++.+........++++.|++++|.+++..+..+ ..+++|++|++++|.++...+..|..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVF----DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTT----TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHh----cCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 3556666666654433334566666666666654222222 235666666666666664444445666666666666
Q ss_pred CCcccccCCcccccCCCccEEEccCCccc
Q 043038 90 NNKFIGNLPNSFGSLAFLVWLDLGKNRLF 118 (271)
Q Consensus 90 ~n~~~~~~~~~~~~l~~L~~l~l~~n~l~ 118 (271)
+|++++..+..+..+++|+.+++++|.++
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 113 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLK 113 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcce
Confidence 66666444444555666666666666665
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.59 E-value=2e-15 Score=126.69 Aligned_cols=182 Identities=13% Similarity=0.108 Sum_probs=126.4
Q ss_pred CCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCcc----ccccCccccCCCCc
Q 043038 56 TKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRL----FGTIPATLKNCTAL 131 (271)
Q Consensus 56 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l----~~~~~~~~~~l~~L 131 (271)
+++|+++++.+ .++...+.+|.++++|+.++++.|.+....+..|....++..+....+.. .......+..+..+
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 78899999988 77755667888899999999998887756666777766666666555221 10011222223333
Q ss_pred c--------------------------EEec-------------CCCCcccEEEeccCccCCCCchhhhcCccccEEecc
Q 043038 132 E--------------------------SLDV-------------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIA 172 (271)
Q Consensus 132 ~--------------------------~L~l-------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 172 (271)
+ .+.+ ..+++|+.+++++|.++...+.+|..+.+|+.+++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 2 2222 127789999999988886666778889999999998
Q ss_pred CCccceecCcccccccCCc-c---ccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCcccc
Q 043038 173 DNNLSGAIPNYINNVTGMV-T---TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLK 248 (271)
Q Consensus 173 ~n~l~~~~~~~~~~~~~L~-~---~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 248 (271)
+| ++...+.+|.++..|+ . .+.+..++ ...|.+|++|+.++++.|.+..
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~~l~~I~--------------------------~~aF~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPASVTAIE--------------------------FGAFMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECTTCCEEC--------------------------TTTTTTCTTEEEEEECSSCCCE
T ss_pred cc-cceehHHHhhCChhccEEEEEcccceEEc--------------------------hhhhhCCccCCEEEeCCCccCc
Confidence 87 6645567788888877 4 22333221 1223578999999999999987
Q ss_pred cccHhhhccCCCCEEEc
Q 043038 249 NVPLEVRNLKATQSLNF 265 (271)
Q Consensus 249 ~~~~~l~~l~~L~~L~l 265 (271)
..+..|.+|++|+.++.
T Consensus 312 I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 312 LGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECTTTTCTTCCCCEEEC
T ss_pred cchhhhcCCcchhhhcc
Confidence 67779999999999874
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=3.9e-15 Score=110.32 Aligned_cols=125 Identities=23% Similarity=0.183 Sum_probs=103.7
Q ss_pred CCCcccEEECcCCCCC-CCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCC
Q 043038 6 KFTQLLFRSLDSNNMS-GLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQ 81 (271)
Q Consensus 6 ~~~~L~~L~l~~n~~~-~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 81 (271)
..++++.|++++|.+. +.+|.. +++|++|++++|.+++. ..+..+++|++|++++|.+++..|..+..++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC------TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc------hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 4578999999999998 566654 57999999999999863 4456699999999999999966888888899
Q ss_pred CCCEEEccCCccccc-CCcccccCCCccEEEccCCccccccC---ccccCCCCccEEec
Q 043038 82 NLKILKLSNNKFIGN-LPNSFGSLAFLVWLDLGKNRLFGTIP---ATLKNCTALESLDV 136 (271)
Q Consensus 82 ~L~~L~l~~n~~~~~-~~~~~~~l~~L~~l~l~~n~l~~~~~---~~~~~l~~L~~L~l 136 (271)
+|++|++++|.+++. .+..+..+++|+.+++++|.+.+..+ ..+..+++|+.|++
T Consensus 89 ~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 89 NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 999999999999853 23678899999999999999985443 36777888877763
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=1.8e-14 Score=109.91 Aligned_cols=133 Identities=20% Similarity=0.161 Sum_probs=106.6
Q ss_pred CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccE
Q 043038 30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVW 109 (271)
Q Consensus 30 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 109 (271)
..+.++++++.++. +|..+ .+.+++|++++|.++...+..|..+++|++|++++|.++...+..+..+++|+.
T Consensus 8 ~~~~l~~~~~~l~~-~p~~~------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 80 (177)
T 2o6r_A 8 SGTEIRCNSKGLTS-VPTGI------PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTI 80 (177)
T ss_dssp ETTEEECCSSCCSS-CCTTC------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCEEEecCCCCcc-CCCCC------CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCE
Confidence 46788999999875 55433 368999999999999666667889999999999999999666666789999999
Q ss_pred EEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceec
Q 043038 110 LDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAI 180 (271)
Q Consensus 110 l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 180 (271)
|++++|.+++..+..+..++ +|++|++++|.+++..+..+..+++|+.+++++|.+.+..
T Consensus 81 L~l~~N~l~~~~~~~~~~l~-----------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 81 LYLHENKLQSLPNGVFDKLT-----------QLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp EECCSSCCCCCCTTTTTTCT-----------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred EECCCCCccccCHHHhhCCc-----------ccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 99999999854444455555 4556669999998666666788999999999999987543
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=2.1e-17 Score=148.15 Aligned_cols=175 Identities=19% Similarity=0.176 Sum_probs=109.0
Q ss_pred CCccEEEccCCccccccchhhhhhccCCCcccEEEccCcc-------------cCCCCCccccCCCCCCEEE-ccCCccc
Q 043038 29 SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNY-------------LQGELPDCWMSDQNLKILK-LSNNKFI 94 (271)
Q Consensus 29 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~-l~~n~~~ 94 (271)
++++.|++++|.++. +|..+.. +++|++|++++|. ..+..|..+..+++|+.|+ ++.|.+.
T Consensus 349 ~~L~~L~Ls~n~L~~-Lp~~i~~----l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 349 EQLFRCELSVEKSTV-LQSELES----CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp TTSSSCCCCHHHHHH-HHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccceeccCChhhHHh-hHHHHHH----HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 466667777777653 4444443 6667777766553 2334455555666666666 4444332
Q ss_pred ccCCc------cccc--CCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccc
Q 043038 95 GNLPN------SFGS--LAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAIL 166 (271)
Q Consensus 95 ~~~~~------~~~~--l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 166 (271)
.++. .+.. ...|+.|++++|.++ .+|. ++.++ +|+.|++++|.++ .+|..++.+++|
T Consensus 424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~~l~-----------~L~~L~Ls~N~l~-~lp~~~~~l~~L 488 (567)
T 1dce_A 424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLL-----------LVTHLDLSHNRLR-ALPPALAALRCL 488 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GGGGT-----------TCCEEECCSSCCC-CCCGGGGGCTTC
T ss_pred -hhhhhhhhcccccccCccCceEEEecCCCCC-CCcC-ccccc-----------cCcEeecCccccc-ccchhhhcCCCC
Confidence 1100 0110 124666777777666 3443 44443 3444557777776 566677777777
Q ss_pred cEEeccCCccceecCcccccccCCccccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCcc
Q 043038 167 QILDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDL 246 (271)
Q Consensus 167 ~~L~l~~n~l~~~~~~~~~~~~~L~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l 246 (271)
+.|++++|.+++ +| .++ .+++|+.|+|++|.+
T Consensus 489 ~~L~Ls~N~l~~-lp-~l~----------------------------------------------~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 489 EVLQASDNALEN-VD-GVA----------------------------------------------NLPRLQELLLCNNRL 520 (567)
T ss_dssp CEEECCSSCCCC-CG-GGT----------------------------------------------TCSSCCEEECCSSCC
T ss_pred CEEECCCCCCCC-Cc-ccC----------------------------------------------CCCCCcEEECCCCCC
Confidence 777777777763 33 222 456678899999999
Q ss_pred cccc-cHhhhccCCCCEEEccCCCCC
Q 043038 247 LKNV-PLEVRNLKATQSLNFSHNTFT 271 (271)
Q Consensus 247 ~~~~-~~~l~~l~~L~~L~l~~n~i~ 271 (271)
.+.. |..+..+++|+.|++++|.|+
T Consensus 521 ~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 521 QQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp CSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 8865 999999999999999999874
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.56 E-value=1.8e-15 Score=139.48 Aligned_cols=139 Identities=26% Similarity=0.298 Sum_probs=106.1
Q ss_pred CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCc
Q 043038 28 SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFL 107 (271)
Q Consensus 28 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 107 (271)
+..|+.|++++|.+.. +|..+. +++.|++|+|++|.++ .+|..|..+++|++|++++|+++ .+|..+..+++|
T Consensus 223 l~~L~~L~Ls~n~l~~-l~~~~~----~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 295 (727)
T 4b8c_D 223 DQLWHALDLSNLQIFN-ISANIF----KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL 295 (727)
T ss_dssp CCCCCEEECTTSCCSC-CCGGGG----GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC
T ss_pred CCCCcEEECCCCCCCC-CChhhc----CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC
Confidence 4689999999999874 665444 3889999999999998 88888999999999999999998 778889999999
Q ss_pred cEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCc-cccEEeccCCccceecCcccc
Q 043038 108 VWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLA-ILQILDIADNNLSGAIPNYIN 185 (271)
Q Consensus 108 ~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~ 185 (271)
+.|++++|.+. .+|..++.+++|+ .|++++|.+++.+|..+.... ....+++++|.+++.+|..+.
T Consensus 296 ~~L~L~~N~l~-~lp~~~~~l~~L~-----------~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~ 362 (727)
T 4b8c_D 296 KYFYFFDNMVT-TLPWEFGNLCNLQ-----------FLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERR 362 (727)
T ss_dssp SEEECCSSCCC-CCCSSTTSCTTCC-----------CEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--
T ss_pred CEEECCCCCCC-ccChhhhcCCCcc-----------EEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccc
Confidence 99999999987 7787777766555 444788888776666665432 122356666766666665443
No 131
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.55 E-value=6.2e-16 Score=139.49 Aligned_cols=107 Identities=18% Similarity=0.036 Sum_probs=63.2
Q ss_pred CCCcccEEECcCCCCCCCccc----cCCCccEEEccCC-ccccccchhhhhhccCCCcccEEEccCcccCCCCCccc---
Q 043038 6 KFTQLLFRSLDSNNMSGLLPL----ISSNLVYLGLSDN-SFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCW--- 77 (271)
Q Consensus 6 ~~~~L~~L~l~~n~~~~~~~~----~~~~L~~L~l~~n-~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--- 77 (271)
.+++|+.|++++|.+.+..+. .+++|++|++++| .++.. .+...+.++++|++|++++|.+++..+..+
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~---~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTD---GLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHH---HHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHH---HHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 567888888888877654332 2568888888887 43321 122222247788888888887664333322
Q ss_pred -cCCCCCCEEEccCCc--ccc-cCCcccccCCCccEEEccCC
Q 043038 78 -MSDQNLKILKLSNNK--FIG-NLPNSFGSLAFLVWLDLGKN 115 (271)
Q Consensus 78 -~~l~~L~~L~l~~n~--~~~-~~~~~~~~l~~L~~l~l~~n 115 (271)
..+++|++|++++|. +.. .++..+..+++|+.|++++|
T Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 255677788877775 210 01111233567777777666
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=2e-14 Score=109.60 Aligned_cols=130 Identities=19% Similarity=0.174 Sum_probs=91.2
Q ss_pred CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCc
Q 043038 28 SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFL 107 (271)
Q Consensus 28 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 107 (271)
..+++.|++++|.++. ++.... ..++|++|++++|.+++ + ..|..+++|++|++++|.++...+..+..+++|
T Consensus 18 ~~~L~~L~l~~n~l~~-i~~~~~----~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV-IENLGA----TLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp TTSCEEEECTTSCCCS-CCCGGG----GTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCceEEEeeCCCCch-hHHhhh----cCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 3477778888877764 333211 13478888888888873 3 567788888888888888885444555778888
Q ss_pred cEEEccCCccccccCc--cccCCCCccEEecCCCCcccEEEeccCccCCCCch----hhhcCccccEEeccCCccc
Q 043038 108 VWLDLGKNRLFGTIPA--TLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPT----RFCDLAILQILDIADNNLS 177 (271)
Q Consensus 108 ~~l~l~~n~l~~~~~~--~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~ 177 (271)
+.|++++|.+. .+|. .+..++ +|+.|++++|.++ ..|. .+..+++|+.+++++|...
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~-----------~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLK-----------SLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCT-----------TCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCC-----------CCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 88888888886 4554 444443 4556668888887 3454 4788889999999888765
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=4.2e-14 Score=107.78 Aligned_cols=112 Identities=20% Similarity=0.164 Sum_probs=69.2
Q ss_pred CccCCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccC
Q 043038 3 NLTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMS 79 (271)
Q Consensus 3 ~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 79 (271)
.+.++.+|+.|++++|.+... |.. .++|++|++++|.+++. ..+..+++|++|++++|.++...+..|..
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~------~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 86 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICRIGEGLDQA 86 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE------CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred hcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc------cccccCCCCCEEECCCCcccccCcchhhc
Confidence 345566677777777766643 322 23677777777776641 23444677777777777776333344466
Q ss_pred CCCCCEEEccCCcccccCCc--ccccCCCccEEEccCCccccccCc
Q 043038 80 DQNLKILKLSNNKFIGNLPN--SFGSLAFLVWLDLGKNRLFGTIPA 123 (271)
Q Consensus 80 l~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~l~l~~n~l~~~~~~ 123 (271)
+++|++|++++|+++ .+|. .+..+++|+.+++++|.+. ..|.
T Consensus 87 l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~ 130 (176)
T 1a9n_A 87 LPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKH 130 (176)
T ss_dssp CTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTT
T ss_pred CCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHh
Confidence 777777777777775 3443 5666677777777777766 3444
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=2.9e-13 Score=102.55 Aligned_cols=104 Identities=18% Similarity=0.115 Sum_probs=47.9
Q ss_pred cEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccC
Q 043038 11 LFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSN 90 (271)
Q Consensus 11 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 90 (271)
+.+++++|.+...+....+++++|++++|.+++..|..+. .+++|++|++++|+++...+..|..+++|++|++++
T Consensus 12 ~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~----~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFD----RLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTT----TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhc----CcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4455555555443222234555555555555443232222 244555555555555433333444455555555555
Q ss_pred CcccccCCcccccCCCccEEEccCCccc
Q 043038 91 NKFIGNLPNSFGSLAFLVWLDLGKNRLF 118 (271)
Q Consensus 91 n~~~~~~~~~~~~l~~L~~l~l~~n~l~ 118 (271)
|+++...+..|..+++|+.+++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5554333333444455555555555443
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=7.5e-13 Score=100.65 Aligned_cols=61 Identities=30% Similarity=0.305 Sum_probs=29.6
Q ss_pred cccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccc
Q 043038 58 RLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLF 118 (271)
Q Consensus 58 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~ 118 (271)
.|++|++++|.+++..|..|..+++|++|++++|++++..+..|..+++|+.|++++|.+.
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~ 94 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc
Confidence 4455555555554333444455555555555555554333333444555555555555554
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=1.1e-15 Score=118.91 Aligned_cols=107 Identities=22% Similarity=0.233 Sum_probs=59.9
Q ss_pred CCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEe
Q 043038 56 TKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLD 135 (271)
Q Consensus 56 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~ 135 (271)
++.|++|++++|.++ .+| .+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+ +| .+..++
T Consensus 47 l~~L~~L~ls~n~l~-~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~------ 115 (198)
T 1ds9_A 47 LKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLV------ 115 (198)
T ss_dssp TTTCSEEECSEEEES-CCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHH------
T ss_pred CCCCCEEECCCCCCc-ccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCC------
Confidence 666666666666666 344 5566666666666666666 455555555666666666666653 33 233222
Q ss_pred cCCCCcccEEEeccCccCCCCc-hhhhcCccccEEeccCCccce
Q 043038 136 VERFSRMVVLNLRSNKFHGPLP-TRFCDLAILQILDIADNNLSG 178 (271)
Q Consensus 136 l~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~ 178 (271)
+|+.|++++|.+++..+ ..+..+++|+.+++++|.+.+
T Consensus 116 -----~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 116 -----NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp -----HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred -----CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 34444466666653211 245566666666666666553
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=5e-15 Score=115.17 Aligned_cols=151 Identities=20% Similarity=0.217 Sum_probs=116.8
Q ss_pred ccCCCcccEEECcCCCCCCCccc------c---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCC
Q 043038 4 LTKFTQLLFRSLDSNNMSGLLPL------I---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELP 74 (271)
Q Consensus 4 ~~~~~~L~~L~l~~n~~~~~~~~------~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 74 (271)
+.+...++.++++++.+.+..|. . +++|++|++++|.+++ +| .+.. +++|++|++++|.++ .+|
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~----l~~L~~L~l~~n~l~-~l~ 86 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG----MENLRILSLGRNLIK-KIE 86 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH----HTTCCEEEEEEEEEC-SCS
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc----CCCCCEEECCCCCcc-ccc
Confidence 34456777788888888877665 3 6799999999999987 56 4443 899999999999998 778
Q ss_pred ccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCc--cccCCCCccEEecCCCCcccEEEeccCcc
Q 043038 75 DCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPA--TLKNCTALESLDVERFSRMVVLNLRSNKF 152 (271)
Q Consensus 75 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~--~~~~l~~L~~L~l~~~~~L~~L~l~~n~l 152 (271)
..+..+++|++|++++|++++ +| .+..+++|+.+++++|.+.+ ++. .+..++ +|++|++++|.+
T Consensus 87 ~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~-----------~L~~L~l~~N~l 152 (198)
T 1ds9_A 87 NLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALD-----------KLEDLLLAGNPL 152 (198)
T ss_dssp SHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTT-----------TCSEEEECSCHH
T ss_pred chhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc-hhHHHHHhcCC-----------CCCEEEecCCcc
Confidence 887788999999999999984 44 58888999999999999883 332 444444 556677999998
Q ss_pred CCCCch----------hhhcCccccEEeccCCccc
Q 043038 153 HGPLPT----------RFCDLAILQILDIADNNLS 177 (271)
Q Consensus 153 ~~~~~~----------~~~~l~~L~~L~l~~n~l~ 177 (271)
++..|. .+..+++|+.|+ ++.++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 153 YNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 754433 377888999887 55554
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=2.3e-12 Score=97.58 Aligned_cols=107 Identities=21% Similarity=0.203 Sum_probs=64.0
Q ss_pred CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccE
Q 043038 30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVW 109 (271)
Q Consensus 30 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 109 (271)
..+.+++++|.++. +|..+ .+.+++|++++|.+++..|..|..+++|++|++++|+++...+..|..+++|+.
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~------~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGI------PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCC------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCEEEeCCCCcCc-cCccC------CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCE
Confidence 45667777777664 44332 246677777777776555666667777777777777776444455566677777
Q ss_pred EEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCC
Q 043038 110 LDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHG 154 (271)
Q Consensus 110 l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~ 154 (271)
|++++|.+++..+..+..+++ |+.|++++|.++.
T Consensus 83 L~L~~N~l~~~~~~~~~~l~~-----------L~~L~L~~N~~~c 116 (170)
T 3g39_A 83 LSLNDNQLKSIPRGAFDNLKS-----------LTHIWLLNNPWDC 116 (170)
T ss_dssp EECCSSCCCCCCTTTTTTCTT-----------CCEEECCSSCBCT
T ss_pred EECCCCccCEeCHHHhcCCCC-----------CCEEEeCCCCCCC
Confidence 777777666333333444433 3344466666654
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=5.1e-12 Score=96.01 Aligned_cols=104 Identities=22% Similarity=0.268 Sum_probs=86.6
Q ss_pred ccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCc-cccCCCCccEEecC
Q 043038 59 LEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPA-TLKNCTALESLDVE 137 (271)
Q Consensus 59 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~-~~~~l~~L~~L~l~ 137 (271)
-+.+++++|.++ .+|..+. +.|+.|++++|++++..|..|..+++|+.|++++|.+++ +|. .+..++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~-------- 81 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLT-------- 81 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCT--------
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcc--------
Confidence 478899999998 7777653 889999999999997778889999999999999999994 454 345555
Q ss_pred CCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccc
Q 043038 138 RFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177 (271)
Q Consensus 138 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 177 (271)
+|+.|++++|.+++..+..|..+++|+.|++++|.+.
T Consensus 82 ---~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 82 ---QLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp ---TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ---hhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 4556669999999666666999999999999999987
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.32 E-value=1e-12 Score=110.04 Aligned_cols=170 Identities=10% Similarity=0.006 Sum_probs=115.1
Q ss_pred CccccC--------CCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCC-------
Q 043038 74 PDCWMS--------DQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVER------- 138 (271)
Q Consensus 74 ~~~~~~--------l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~------- 138 (271)
+.+|.+ +++|+.+++.. .++...+..|.++++|+.+++..|.+....+..+..+.++..+....
T Consensus 86 ~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~ 164 (329)
T 3sb4_A 86 AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFK 164 (329)
T ss_dssp TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTS
T ss_pred HHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcc
Confidence 456777 99999999999 77756677899999999999999988755566777777666665421
Q ss_pred ----------CCccc-EEEe-------------------------ccCccCCCCchhhhcCccccEEeccCCccceecCc
Q 043038 139 ----------FSRMV-VLNL-------------------------RSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPN 182 (271)
Q Consensus 139 ----------~~~L~-~L~l-------------------------~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 182 (271)
+..|+ .+.+ .++-...........+++|+.+++++|+++.....
T Consensus 165 ~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~ 244 (329)
T 3sb4_A 165 NRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDF 244 (329)
T ss_dssp TTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTT
T ss_pred ccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHh
Confidence 12222 1222 11100000000111378999999999999855566
Q ss_pred ccccccCCcc---ccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHh-hhhhcCCcccccccHhhhccC
Q 043038 183 YINNVTGMVT---TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVM-VTIVSRNDLLKNVPLEVRNLK 258 (271)
Q Consensus 183 ~~~~~~~L~~---~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~l~~l~ 258 (271)
+|.++..|+. .+.+..++. ..|.++++|+ .+++.+ .+....+..|.+|+
T Consensus 245 aF~~~~~L~~l~l~~ni~~I~~--------------------------~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~ 297 (329)
T 3sb4_A 245 TFAQKKYLLKIKLPHNLKTIGQ--------------------------RVFSNCGRLAGTLELPA-SVTAIEFGAFMGCD 297 (329)
T ss_dssp TTTTCTTCCEEECCTTCCEECT--------------------------TTTTTCTTCCEEEEECT-TCCEECTTTTTTCT
T ss_pred hhhCCCCCCEEECCcccceehH--------------------------HHhhCChhccEEEEEcc-cceEEchhhhhCCc
Confidence 7888888877 222333211 2234788898 999987 67666678999999
Q ss_pred CCCEEEccCCCCC
Q 043038 259 ATQSLNFSHNTFT 271 (271)
Q Consensus 259 ~L~~L~l~~n~i~ 271 (271)
+|+.+++++|+++
T Consensus 298 ~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 298 NLRYVLATGDKIT 310 (329)
T ss_dssp TEEEEEECSSCCC
T ss_pred cCCEEEeCCCccC
Confidence 9999999988764
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=6.3e-14 Score=119.35 Aligned_cols=138 Identities=17% Similarity=0.102 Sum_probs=66.2
Q ss_pred CCccEEEccCCccccccchhhhhhccCC-CcccEEEccCcccCCCCCccc-cCCCCCCEEEccCCcccccCCccc-----
Q 043038 29 SNLVYLGLSDNSFLGSISHFLCDKINET-KRLEALKLNDNYLQGELPDCW-MSDQNLKILKLSNNKFIGNLPNSF----- 101 (271)
Q Consensus 29 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~----- 101 (271)
+.++.|++++|.++......+...+... +.|++|++++|.++......+ ..+.+|+.|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 3566666666666543333444433322 466666666666542221221 223456666666666653222222
Q ss_pred ccCCCccEEEccCCccccc----cCccccCCCCccEEecCCCCcccEEEeccCccCCC----CchhhhcCccccEEeccC
Q 043038 102 GSLAFLVWLDLGKNRLFGT----IPATLKNCTALESLDVERFSRMVVLNLRSNKFHGP----LPTRFCDLAILQILDIAD 173 (271)
Q Consensus 102 ~~l~~L~~l~l~~n~l~~~----~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~ 173 (271)
...++|+.|++++|.+++. ++..+..+ ++|++|++++|.+++. ++..+...+.|+.|++++
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~-----------~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~ 220 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGN-----------TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY 220 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTC-----------SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcC-----------CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCC
Confidence 1235566666666665432 11122222 2344444666665421 133344455666666666
Q ss_pred Cccc
Q 043038 174 NNLS 177 (271)
Q Consensus 174 n~l~ 177 (271)
|.++
T Consensus 221 N~i~ 224 (372)
T 3un9_A 221 NGAG 224 (372)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6554
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=7.6e-13 Score=112.63 Aligned_cols=164 Identities=20% Similarity=0.108 Sum_probs=116.0
Q ss_pred CCcccEEECcCCCCCCCcccc--------CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccc-
Q 043038 7 FTQLLFRSLDSNNMSGLLPLI--------SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCW- 77 (271)
Q Consensus 7 ~~~L~~L~l~~n~~~~~~~~~--------~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~- 77 (271)
++.++.|++++|.++...... .++|+.|++++|.++......+... +++|++|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~---L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPV---FLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHH---HHTEEEEECCSSCCCHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHH---HHhccHhhcCCCCCCHHHHHHHH
Confidence 467899999999987543221 2589999999999875444444332 4579999999999974333333
Q ss_pred ----cCCCCCCEEEccCCccccc----CCcccccCCCccEEEccCCcccccc----CccccCCCCccEEecCCCCcccEE
Q 043038 78 ----MSDQNLKILKLSNNKFIGN----LPNSFGSLAFLVWLDLGKNRLFGTI----PATLKNCTALESLDVERFSRMVVL 145 (271)
Q Consensus 78 ----~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~l~l~~n~l~~~~----~~~~~~l~~L~~L~l~~~~~L~~L 145 (271)
...++|++|++++|.++.. ++..+...++|+.|++++|.+.+.. +..+... ++|+.|
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~-----------~~L~~L 216 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN-----------RQLQEL 216 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGC-----------SCCCEE
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcC-----------CCcCeE
Confidence 2468899999999998742 3344567889999999999987532 2333333 356677
Q ss_pred EeccCccCCC----CchhhhcCccccEEeccCCccceecCccc
Q 043038 146 NLRSNKFHGP----LPTRFCDLAILQILDIADNNLSGAIPNYI 184 (271)
Q Consensus 146 ~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 184 (271)
++++|.+++. ++..+...+.|+.|++++|.++......+
T Consensus 217 ~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 217 NVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp ECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 7999998743 33445567899999999999874433333
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.25 E-value=6.8e-11 Score=101.55 Aligned_cols=130 Identities=15% Similarity=0.121 Sum_probs=55.4
Q ss_pred cccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec-
Q 043038 58 RLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV- 136 (271)
Q Consensus 58 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l- 136 (271)
.|+++.+.. .++...+.+|.++.+|+.++++.|.++......|. ..+|+.+.+..+ ++......+..+++|+.+++
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 345555443 33323334455555555555555444422222232 344455544432 22122233444444444443
Q ss_pred -----------CCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccc-----eecCcccccccCCcc
Q 043038 137 -----------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS-----GAIPNYINNVTGMVT 192 (271)
Q Consensus 137 -----------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~~~~L~~ 192 (271)
.. .+|+.+.+. +.++.....+|..+++|+.+.+.++.+. .....+|..|.+|+.
T Consensus 235 ~~l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~ 304 (401)
T 4fdw_A 235 ENVSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLAR 304 (401)
T ss_dssp TTCCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCE
T ss_pred CCccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCe
Confidence 11 234455452 2233233445555555666655554432 123344455554444
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.22 E-value=1.5e-10 Score=99.34 Aligned_cols=227 Identities=7% Similarity=0.015 Sum_probs=151.6
Q ss_pred ccCCCcccEEECcCCCCCCCccccC--CCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCC
Q 043038 4 LTKFTQLLFRSLDSNNMSGLLPLIS--SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQ 81 (271)
Q Consensus 4 ~~~~~~L~~L~l~~n~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 81 (271)
|.+. +|+.+++..+ +......++ ++|+.+.+.. .++.... .+|.++++|+.+++++|.++.....+|. ..
T Consensus 132 F~~~-~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~----~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~ 203 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKE----DIFYYCYNLKKADLSKTKITKLPASTFV-YA 203 (401)
T ss_dssp TTTC-CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECS----STTTTCTTCCEEECTTSCCSEECTTTTT-TC
T ss_pred cccC-CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehH----HHhhCcccCCeeecCCCcceEechhhEe-ec
Confidence 4554 5777777655 443333333 4788888875 4443222 2344589999999999998855555665 68
Q ss_pred CCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec------------CCCCcccEEEecc
Q 043038 82 NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV------------ERFSRMVVLNLRS 149 (271)
Q Consensus 82 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l------------~~~~~L~~L~l~~ 149 (271)
+|+.+.+..+ ++......|..+++|+.+.+..+ ++......+.. .+|+.+.+ ..+++|+.+++.+
T Consensus 204 ~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 204 GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEES
T ss_pred ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCC
Confidence 9999999855 55455677888999999999875 34233344444 56777765 6678899999988
Q ss_pred CccC-----CCCchhhhcCccccEEeccCCccceecCcccccccCCcc---ccccccccccccccccchhhhhhhhceec
Q 043038 150 NKFH-----GPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT---TNSFSRSAQQHLHVPLDVDVILMEKASVV 221 (271)
Q Consensus 150 n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~---~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (271)
+.+. ...+..|..+++|+.+.+.+ .++.....+|.+|..|+. .+.+..++.
T Consensus 281 ~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~-------------------- 339 (401)
T 4fdw_A 281 STFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPANVTQINF-------------------- 339 (401)
T ss_dssp SCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTTCCEECT--------------------
T ss_pred ccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECccccEEcH--------------------
Confidence 7764 23456788899999999984 466455667777777766 222222211
Q ss_pred cccchhhHHHHHhhHhhhhhcCCcccccccHhhhccC-CCCEEEccCCC
Q 043038 222 SREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLK-ATQSLNFSHNT 269 (271)
Q Consensus 222 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~ 269 (271)
..+..+ +|+.+++.+|.........|.+++ .++.|++..+.
T Consensus 340 ------~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 340 ------SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp ------TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred ------HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 112356 788899988887665566777774 67888876653
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.15 E-value=1.5e-10 Score=97.44 Aligned_cols=106 Identities=19% Similarity=0.137 Sum_probs=83.4
Q ss_pred cEEEccCC-ccccccchhhhhhccCCCcccEEEccC-cccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccE
Q 043038 32 VYLGLSDN-SFLGSISHFLCDKINETKRLEALKLND-NYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVW 109 (271)
Q Consensus 32 ~~L~l~~n-~~~~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 109 (271)
..++.+++ .++. +|. ++ .+++|++|+|++ |.+++..+..|.++++|+.|++++|++++..|..|..+++|+.
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~----~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 84 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LP----GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SC----SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred CEEEcCCCCCCCc-cCC-CC----CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCE
Confidence 45688887 7875 665 44 488999999996 9999666688999999999999999999888888999999999
Q ss_pred EEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCC
Q 043038 110 LDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGP 155 (271)
Q Consensus 110 l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~ 155 (271)
|++++|.+. .+|..+..... |+.|++.+|.++..
T Consensus 85 L~l~~N~l~-~~~~~~~~~~~-----------L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 85 LNLSFNALE-SLSWKTVQGLS-----------LQELVLSGNPLHCS 118 (347)
T ss_dssp EECCSSCCS-CCCSTTTCSCC-----------CCEEECCSSCCCCC
T ss_pred EeCCCCccc-eeCHHHcccCC-----------ceEEEeeCCCccCC
Confidence 999999998 45544332221 55677888988753
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.09 E-value=5.8e-10 Score=93.87 Aligned_cols=102 Identities=20% Similarity=0.111 Sum_probs=80.9
Q ss_pred cEEECcCC-CCCCCcccc--CCCccEEEccC-CccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEE
Q 043038 11 LFRSLDSN-NMSGLLPLI--SSNLVYLGLSD-NSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKIL 86 (271)
Q Consensus 11 ~~L~l~~n-~~~~~~~~~--~~~L~~L~l~~-n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 86 (271)
..++++++ .+.. +|.. +.+|+.|++++ |.+++..+.. |..+++|+.|+|++|.+++..|..|..+++|++|
T Consensus 11 ~~v~~~~~n~l~~-ip~l~~~~~L~~L~l~~~n~l~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 85 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHHLPGAENLTELYIENQQHLQHLELRD----LRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85 (347)
T ss_dssp SCEECCSSCCCTT-TTTSCSCSCCSEEECCSCSSCCEECGGG----SCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred CEEEcCCCCCCCc-cCCCCCCCCeeEEEccCCCCCCCcChhH----hccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence 35688888 7876 4442 24799999996 9988744444 4459999999999999998788889999999999
Q ss_pred EccCCcccccCCcccccCCCccEEEccCCccc
Q 043038 87 KLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLF 118 (271)
Q Consensus 87 ~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~ 118 (271)
++++|++++..+..|..++ |+.|++.+|.+.
T Consensus 86 ~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 86 NLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp ECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred eCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 9999999955555555555 999999999876
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.88 E-value=1.7e-09 Score=91.37 Aligned_cols=143 Identities=19% Similarity=0.158 Sum_probs=79.5
Q ss_pred CCCccEEEccCCccccc-c----chhhhhhccCCCcccEEEccCcc-cCCCCCccccCCCCCCEEEccCCcccccCCccc
Q 043038 28 SSNLVYLGLSDNSFLGS-I----SHFLCDKINETKRLEALKLNDNY-LQGELPDCWMSDQNLKILKLSNNKFIGNLPNSF 101 (271)
Q Consensus 28 ~~~L~~L~l~~n~~~~~-~----~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 101 (271)
+++|+.|.+.+...... + ...+...+..++.|++|.+++|. +. ++. + .+++|+.|++..|.+.......+
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~--l~~-~-~~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS--IGK-K-PRPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB--CCS-C-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce--ecc-c-cCCCCcEEEEecCCCChHHHHHH
Confidence 46888888865432100 0 11133334457888888888773 32 222 3 37788888888887653322233
Q ss_pred c--cCCCccEEEccCC--ccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhh---cCccccEEeccCC
Q 043038 102 G--SLAFLVWLDLGKN--RLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFC---DLAILQILDIADN 174 (271)
Q Consensus 102 ~--~l~~L~~l~l~~n--~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~l~~n 174 (271)
. .+|+|+.|+++.+ ...+. ..+..+..+ +....+++|+.|++.+|.+++..+..+. .+++|+.|++++|
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~--~~~~~l~~~--l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFD--GDMNVFRPL--FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCC--SCGGGTGGG--SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred HHccCCCCcEEEEeccccccccc--hhHHHHHHH--HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence 3 5788888887532 11111 011111111 1112466777888888877643333333 4567888888887
Q ss_pred ccce
Q 043038 175 NLSG 178 (271)
Q Consensus 175 ~l~~ 178 (271)
.+.+
T Consensus 290 ~L~d 293 (362)
T 2ra8_A 290 VLTD 293 (362)
T ss_dssp CCBH
T ss_pred CCCh
Confidence 7763
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.87 E-value=1.8e-09 Score=91.27 Aligned_cols=187 Identities=14% Similarity=0.140 Sum_probs=99.1
Q ss_pred CccEEEccCCcccc-cc---chhhhhhccCCCcccEEEccCcccC---------CCCCccccCCCCCCEEEccCCccccc
Q 043038 30 NLVYLGLSDNSFLG-SI---SHFLCDKINETKRLEALKLNDNYLQ---------GELPDCWMSDQNLKILKLSNNKFIGN 96 (271)
Q Consensus 30 ~L~~L~l~~n~~~~-~~---~~~~~~~~~~~~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~~~~~ 96 (271)
.++.|.+....+.+ .. -..+.....++++|+.|.+...... +.+...+..+++|+.|.+++|.-. .
T Consensus 108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~ 186 (362)
T 2ra8_A 108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-S 186 (362)
T ss_dssp GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-B
T ss_pred hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-e
Confidence 56677777554331 11 1122333334778888887654321 113344556778888888776311 2
Q ss_pred CCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEecc--CccCCC-----Cchhh--hcCcccc
Q 043038 97 LPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRS--NKFHGP-----LPTRF--CDLAILQ 167 (271)
Q Consensus 97 ~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~--n~l~~~-----~~~~~--~~l~~L~ 167 (271)
++. + .+++|+.|++..+.+.......+.. ..+|+|+.|+|+. +...+. +...+ ..+++|+
T Consensus 187 l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~---------~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr 255 (362)
T 2ra8_A 187 IGK-K-PRPNLKSLEIISGGLPDSVVEDILG---------SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLK 255 (362)
T ss_dssp CCS-C-BCTTCSEEEEECSBCCHHHHHHHHH---------SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCC
T ss_pred ecc-c-cCCCCcEEEEecCCCChHHHHHHHH---------ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcC
Confidence 232 3 3678888888777665332222220 1234455555542 221111 11122 2467888
Q ss_pred EEeccCCccceecCcccccccCCccccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCccc
Q 043038 168 ILDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLL 247 (271)
Q Consensus 168 ~L~l~~n~l~~~~~~~~~~~~~L~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 247 (271)
.|++.+|.+.+..+..+... ..+++|+.|+|+.|.+.
T Consensus 256 ~L~L~~~~i~~~~~~~la~a-------------------------------------------~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 256 WLGIVDAEEQNVVVEMFLES-------------------------------------------DILPQLETMDISAGVLT 292 (362)
T ss_dssp EEEEESCTTHHHHHHHHHHC-------------------------------------------SSGGGCSEEECCSSCCB
T ss_pred EEeCCCCCCchHHHHHHHhC-------------------------------------------ccCCCCCEEECCCCCCC
Confidence 88888877753222111100 13567777888777776
Q ss_pred cc----ccHhhhccCCCCEEEccCCCCC
Q 043038 248 KN----VPLEVRNLKATQSLNFSHNTFT 271 (271)
Q Consensus 248 ~~----~~~~l~~l~~L~~L~l~~n~i~ 271 (271)
+. ++..+..+++|+.|++++|.|+
T Consensus 293 d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 293 DEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred hHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 54 3334456778888888777764
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.73 E-value=2.8e-09 Score=81.58 Aligned_cols=118 Identities=14% Similarity=0.172 Sum_probs=76.6
Q ss_pred CCccEEEccCC-ccccccchhhhhhccCCCcccEEEccCcccCCC----CCccccCCCCCCEEEccCCccccc----CCc
Q 043038 29 SNLVYLGLSDN-SFLGSISHFLCDKINETKRLEALKLNDNYLQGE----LPDCWMSDQNLKILKLSNNKFIGN----LPN 99 (271)
Q Consensus 29 ~~L~~L~l~~n-~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~ 99 (271)
+.|++|++++| .++......+...+...+.|++|++++|.++.. +...+...++|++|++++|.++.. +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 57888888888 777655556666666778888888888887632 233445567788888888887732 234
Q ss_pred ccccCCCccEEEc--cCCccccccCccccCCCCccEEecCCCCcccEEEeccCccC
Q 043038 100 SFGSLAFLVWLDL--GKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFH 153 (271)
Q Consensus 100 ~~~~l~~L~~l~l--~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~ 153 (271)
.+...+.|+.|++ ++|.+.+.....+... + ...++|++|++++|.+.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~--L-----~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANM--L-----EKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHH--H-----HHCSSCCEEECCCSSHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHH--H-----HhCCCcCEEeccCCCCC
Confidence 4556677888888 7788764322222110 0 12334566668888775
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.69 E-value=1.1e-07 Score=81.38 Aligned_cols=39 Identities=5% Similarity=-0.147 Sum_probs=28.6
Q ss_pred HHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCC
Q 043038 229 YNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHN 268 (271)
Q Consensus 229 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 268 (271)
.+.+|.+|+.+++..+ +.......|.+|++|+.+++..+
T Consensus 338 aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 338 SFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred hccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 3457788888888765 55555667888999998887654
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.55 E-value=2.8e-08 Score=75.97 Aligned_cols=121 Identities=13% Similarity=0.118 Sum_probs=88.1
Q ss_pred chhhhhhccCCCcccEEEccCc-ccCCC----CCccccCCCCCCEEEccCCccccc----CCcccccCCCccEEEccCCc
Q 043038 46 SHFLCDKINETKRLEALKLNDN-YLQGE----LPDCWMSDQNLKILKLSNNKFIGN----LPNSFGSLAFLVWLDLGKNR 116 (271)
Q Consensus 46 ~~~~~~~~~~~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~l~l~~n~ 116 (271)
.+.+...+...+.|++|++++| .+... +...+...++|++|++++|.++.. +...+...+.|+.|++++|.
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 3445566667899999999999 88632 345566778999999999998742 23345556889999999999
Q ss_pred ccccc----CccccCCCCccEEecCCCCcccEEEe--ccCccCCC----CchhhhcCccccEEeccCCccc
Q 043038 117 LFGTI----PATLKNCTALESLDVERFSRMVVLNL--RSNKFHGP----LPTRFCDLAILQILDIADNNLS 177 (271)
Q Consensus 117 l~~~~----~~~~~~l~~L~~L~l~~~~~L~~L~l--~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~ 177 (271)
+.+.. ...+.. .++|++|++ ++|.++.. +...+...+.|+.|++++|.+.
T Consensus 105 i~~~g~~~l~~~L~~-----------n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 105 ISGSGILALVEALQS-----------NTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CCHHHHHHHHHGGGG-----------CSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCHHHHHHHHHHHHh-----------CCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 87542 223333 345667779 88998743 3455667789999999999986
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.53 E-value=1.4e-06 Score=74.40 Aligned_cols=38 Identities=11% Similarity=0.027 Sum_probs=22.9
Q ss_pred HHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCC
Q 043038 230 NEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHN 268 (271)
Q Consensus 230 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 268 (271)
+.+|.+|+.+.+-.+ +.......|.+|.+|+.+++.++
T Consensus 330 F~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 330 FAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred hhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 345666666666533 44444556677777777776654
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.41 E-value=1.8e-07 Score=75.39 Aligned_cols=39 Identities=28% Similarity=0.285 Sum_probs=19.0
Q ss_pred CCCCCEEEccCCcccc--cCCcccccCCCccEEEccCCccc
Q 043038 80 DQNLKILKLSNNKFIG--NLPNSFGSLAFLVWLDLGKNRLF 118 (271)
Q Consensus 80 l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~l~l~~n~l~ 118 (271)
++.|+.|++++|++++ .++..+..+++|+.|++++|.+.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence 4455555555555543 12233344555555555555554
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.35 E-value=2e-06 Score=73.50 Aligned_cols=133 Identities=11% Similarity=0.034 Sum_probs=69.6
Q ss_pred ccccCCCccEEEccCCccccccCccccCCCCccEEec----------CCCCcccEEEeccCccCCCCchhhhcCccccEE
Q 043038 100 SFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV----------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQIL 169 (271)
Q Consensus 100 ~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l----------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 169 (271)
.|.....++.+.+..+... .....+..+..++.... ..+.+|+.+.+..+ ++.....+|..+.+|+.+
T Consensus 248 ~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i 325 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSI 325 (394)
T ss_dssp TTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred cccccccceeEEcCCCcce-eeccccccccccceeccCceeeccccccccccccccccccc-cceechhhhcCCCCCCEE
Confidence 3444455555555444322 22233344444443332 34456666666543 332334456667777777
Q ss_pred eccCCccceecCcccccccCCcc---ccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCcc
Q 043038 170 DIADNNLSGAIPNYINNVTGMVT---TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDL 246 (271)
Q Consensus 170 ~l~~n~l~~~~~~~~~~~~~L~~---~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l 246 (271)
++.++ ++.....+|.+|.+|+. ...+..++ ..++.+|++|+.+++..+ +
T Consensus 326 ~lp~~-v~~I~~~aF~~c~~L~~i~lp~~l~~I~--------------------------~~aF~~C~~L~~i~lp~~-~ 377 (394)
T 4fs7_A 326 DLPYL-VEEIGKRSFRGCTSLSNINFPLSLRKIG--------------------------ANAFQGCINLKKVELPKR-L 377 (394)
T ss_dssp CCCTT-CCEECTTTTTTCTTCCEECCCTTCCEEC--------------------------TTTBTTCTTCCEEEEEGG-G
T ss_pred EeCCc-ccEEhHHhccCCCCCCEEEECccccEeh--------------------------HHHhhCCCCCCEEEECCC-C
Confidence 77543 44233456666666655 11122111 122357888888888654 3
Q ss_pred cccccHhhhccCCCCEE
Q 043038 247 LKNVPLEVRNLKATQSL 263 (271)
Q Consensus 247 ~~~~~~~l~~l~~L~~L 263 (271)
. .+...|.+|++|+.+
T Consensus 378 ~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 378 E-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp G-GGGGGBCTTCEEEEE
T ss_pred E-EhhheecCCCCCcEE
Confidence 2 345678888888765
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.24 E-value=3.8e-07 Score=73.44 Aligned_cols=99 Identities=24% Similarity=0.204 Sum_probs=67.2
Q ss_pred EEccCCccccccchhhhhhccCCCcccEEEccCcccCC--CCCccccCCCCCCEEEccCCcccccCCcccccCC--CccE
Q 043038 34 LGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQG--ELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLA--FLVW 109 (271)
Q Consensus 34 L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~--~L~~ 109 (271)
++++.|.... ++..+.....+++.|++|++++|.+++ .++..+..+++|+.|++++|++.+. ..+..+. +|+.
T Consensus 148 l~l~~N~~~~-~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~ 224 (267)
T 3rw6_A 148 IDVVLNRRSC-MAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEE 224 (267)
T ss_dssp CCCCTTSHHH-HHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSE
T ss_pred ccccCCHHHH-HHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcce
Confidence 5566664432 333222222358899999999999985 3446667889999999999999843 2344444 8999
Q ss_pred EEccCCccccccCc-------cccCCCCccEEe
Q 043038 110 LDLGKNRLFGTIPA-------TLKNCTALESLD 135 (271)
Q Consensus 110 l~l~~n~l~~~~~~-------~~~~l~~L~~L~ 135 (271)
|++.+|.+.+.+|. .+..+++|+.||
T Consensus 225 L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 225 LWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp EECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred EEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 99999998865542 345567776665
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.20 E-value=4.3e-07 Score=68.22 Aligned_cols=13 Identities=8% Similarity=0.084 Sum_probs=7.3
Q ss_pred CccEEEccCCccc
Q 043038 106 FLVWLDLGKNRLF 118 (271)
Q Consensus 106 ~L~~l~l~~n~l~ 118 (271)
.|+.+++++|.++
T Consensus 62 ~L~~LDLs~~~It 74 (176)
T 3e4g_A 62 KIQAIDATDSCIM 74 (176)
T ss_dssp CEEEEEEESCCCC
T ss_pred eEeEEeCcCCCcc
Confidence 4556666655544
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.16 E-value=7.3e-07 Score=66.94 Aligned_cols=34 Identities=9% Similarity=0.154 Sum_probs=14.4
Q ss_pred CCCEEEccCCcccccCCcccccCCCccEEEccCC
Q 043038 82 NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKN 115 (271)
Q Consensus 82 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n 115 (271)
.|++||+++|.++...-..+..+++|+.|++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 3444444444443222222334444444444444
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.08 E-value=4.5e-05 Score=65.09 Aligned_cols=39 Identities=0% Similarity=-0.119 Sum_probs=29.6
Q ss_pred HHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCC
Q 043038 229 YNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHN 268 (271)
Q Consensus 229 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 268 (271)
.+.+|.+|+.+++..+ +.......|.+|.+|+.+.+..+
T Consensus 306 aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s 344 (394)
T 4gt6_A 306 VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS 344 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT
T ss_pred eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc
Confidence 3457888999988754 54445678999999999998654
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.76 E-value=0.00059 Score=57.64 Aligned_cols=13 Identities=0% Similarity=-0.003 Sum_probs=6.4
Q ss_pred ccCCCcccEEECc
Q 043038 4 LTKFTQLLFRSLD 16 (271)
Q Consensus 4 ~~~~~~L~~L~l~ 16 (271)
|.++.+|+.+++.
T Consensus 65 F~~C~~L~~I~lp 77 (379)
T 4h09_A 65 FNSCYNMTKVTVA 77 (379)
T ss_dssp TTTCTTCCEEEEC
T ss_pred hhCCCCCCEEEeC
Confidence 4444555555543
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.67 E-value=1.3e-05 Score=61.24 Aligned_cols=87 Identities=14% Similarity=0.161 Sum_probs=60.5
Q ss_pred CCccEEEccCC-ccccccchhhhhhccCCCcccEEEccCcccCCC----CCccccCCCCCCEEEccCCcccccC----Cc
Q 043038 29 SNLVYLGLSDN-SFLGSISHFLCDKINETKRLEALKLNDNYLQGE----LPDCWMSDQNLKILKLSNNKFIGNL----PN 99 (271)
Q Consensus 29 ~~L~~L~l~~n-~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~----~~ 99 (271)
+.|+.|++++| .+....-..++..+...+.|++|+|++|.+... +..++..-+.|++|++++|.|+... ..
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 47888888875 776655566777777778888888888888733 3334445678888888888887332 22
Q ss_pred ccccCCCccEEEccCC
Q 043038 100 SFGSLAFLVWLDLGKN 115 (271)
Q Consensus 100 ~~~~l~~L~~l~l~~n 115 (271)
.+..-+.|+.|+++++
T Consensus 121 aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTTTCCCSEEECCCC
T ss_pred HHhhCCceeEEECCCC
Confidence 3444456888888765
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.63 E-value=0.0014 Score=55.29 Aligned_cols=36 Identities=11% Similarity=0.021 Sum_probs=19.8
Q ss_pred HHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEcc
Q 043038 230 NEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFS 266 (271)
Q Consensus 230 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 266 (271)
+.+|.+|+.+.+..+ +.......|.+|.+|+.+.+.
T Consensus 306 F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 306 FMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred hcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 345566666666533 333334556666666666654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.58 E-value=4.3e-05 Score=58.41 Aligned_cols=123 Identities=12% Similarity=0.101 Sum_probs=82.9
Q ss_pred hhhhhhccCCCcccEEEccCc-ccCCC----CCccccCCCCCCEEEccCCcccccC----CcccccCCCccEEEccCCcc
Q 043038 47 HFLCDKINETKRLEALKLNDN-YLQGE----LPDCWMSDQNLKILKLSNNKFIGNL----PNSFGSLAFLVWLDLGKNRL 117 (271)
Q Consensus 47 ~~~~~~~~~~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~l~l~~n~l 117 (271)
..+...+.+-+.|++|++++| .|... +..++..-+.|+.|++++|.++... ...+..-+.|+.|+++.|.+
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 445555566789999999986 77632 3455666789999999999997432 23344557899999999999
Q ss_pred ccccCccccC-CCCccEEecCCCCcccEEEeccC---ccCC----CCchhhhcCccccEEeccCCccc
Q 043038 118 FGTIPATLKN-CTALESLDVERFSRMVVLNLRSN---KFHG----PLPTRFCDLAILQILDIADNNLS 177 (271)
Q Consensus 118 ~~~~~~~~~~-l~~L~~L~l~~~~~L~~L~l~~n---~l~~----~~~~~~~~l~~L~~L~l~~n~l~ 177 (271)
.+.....+.. ++ ..+.|+.|++++| .+.. .+...+...+.|..|+++.|.+.
T Consensus 111 g~~Ga~ala~aL~--------~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 111 TPELLARLLRSTL--------VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp CHHHHHHHHHHTT--------TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred CHHHHHHHHHHHh--------hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 7543332221 11 2334667778754 4432 24456777889999999987654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.85 E-value=0.0028 Score=44.94 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=19.8
Q ss_pred cccEEEccCcccCCCCCccccCCCCCCEEEccCCcc
Q 043038 58 RLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKF 93 (271)
Q Consensus 58 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 93 (271)
.++.|+|++|.|+...+..|..+++|+.|++++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 455555555555533344455555666666666554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.66 E-value=0.0027 Score=45.02 Aligned_cols=36 Identities=25% Similarity=0.269 Sum_probs=18.6
Q ss_pred CCCEEEccCCcccccCCcccccCCCccEEEccCCcc
Q 043038 82 NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRL 117 (271)
Q Consensus 82 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l 117 (271)
+++.|++++|+++...++.|..+++|+.+++.+|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 455555555555533334444555555555555543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=66.16 E-value=8.7 Score=25.25 Aligned_cols=45 Identities=13% Similarity=0.070 Sum_probs=21.1
Q ss_pred cCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccC
Q 043038 69 LQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGK 114 (271)
Q Consensus 69 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~ 114 (271)
++.....+|.++.+|+.+.+..+--. .....|..+.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~v~~-Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPNIGL-LYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTTSSC-CCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCchhe-EcHHHHhccCCccEEEEcC
Confidence 33333445555555555555543221 2333455555555555533
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=55.33 E-value=22 Score=23.26 Aligned_cols=40 Identities=10% Similarity=0.107 Sum_probs=30.3
Q ss_pred hccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCc
Q 043038 52 KINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNK 92 (271)
Q Consensus 52 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 92 (271)
+|.++..|+++.+..+ ++.....+|.++.+|+.+.+....
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence 3445889999988765 343567789999999999988654
Done!