Query 043039
Match_columns 949
No_of_seqs 477 out of 4649
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 12:13:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043039.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043039hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.2E-85 2.5E-90 771.4 45.5 831 3-913 2-856 (889)
2 PLN03210 Resistant to P. syrin 100.0 5.3E-61 1.2E-65 597.9 51.9 669 171-918 181-908 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 9.8E-43 2.1E-47 373.1 15.3 279 179-464 1-286 (287)
4 PLN00113 leucine-rich repeat r 99.9 5.1E-24 1.1E-28 267.6 16.9 349 540-916 92-465 (968)
5 PLN00113 leucine-rich repeat r 99.9 4.3E-24 9.3E-29 268.2 16.1 147 541-689 164-314 (968)
6 KOG0444 Cytoskeletal regulator 99.9 1.2E-26 2.7E-31 244.9 -6.0 318 540-916 54-375 (1255)
7 KOG0444 Cytoskeletal regulator 99.9 8.9E-25 1.9E-29 231.0 -4.7 294 542-897 79-380 (1255)
8 KOG4194 Membrane glycoprotein 99.9 2.7E-23 5.9E-28 218.8 4.2 267 541-832 78-350 (873)
9 KOG0472 Leucine-rich repeat pr 99.8 1.8E-23 3.8E-28 210.9 -6.9 141 546-690 73-213 (565)
10 KOG4194 Membrane glycoprotein 99.8 1.2E-21 2.6E-26 206.5 3.7 342 540-912 101-448 (873)
11 PLN03210 Resistant to P. syrin 99.8 1.8E-19 3.8E-24 226.0 21.0 334 541-919 532-885 (1153)
12 KOG0472 Leucine-rich repeat pr 99.8 1.2E-22 2.6E-27 204.9 -11.8 342 542-914 46-469 (565)
13 KOG0618 Serine/threonine phosp 99.7 9.8E-20 2.1E-24 202.9 -5.4 101 543-646 47-147 (1081)
14 KOG0618 Serine/threonine phosp 99.6 6.1E-18 1.3E-22 188.8 -5.2 322 562-914 43-418 (1081)
15 PRK15387 E3 ubiquitin-protein 99.6 9.2E-15 2E-19 169.6 14.7 253 545-891 205-457 (788)
16 PRK15387 E3 ubiquitin-protein 99.5 3.5E-14 7.5E-19 164.9 13.3 257 564-915 201-457 (788)
17 PRK15370 E3 ubiquitin-protein 99.5 2.4E-14 5.1E-19 167.6 12.0 199 566-834 180-378 (754)
18 PRK15370 E3 ubiquitin-protein 99.5 7E-14 1.5E-18 163.7 11.1 246 542-861 179-424 (754)
19 KOG0617 Ras suppressor protein 99.5 1.3E-15 2.9E-20 136.3 -5.0 145 541-689 33-179 (264)
20 KOG0617 Ras suppressor protein 99.5 1.3E-15 2.9E-20 136.4 -5.4 131 558-691 27-158 (264)
21 PRK04841 transcriptional regul 99.4 2E-11 4.4E-16 153.1 25.6 293 173-517 13-332 (903)
22 PRK00411 cdc6 cell division co 99.4 1.6E-10 3.5E-15 129.6 30.0 316 172-507 28-375 (394)
23 KOG4658 Apoptotic ATPase [Sign 99.3 3.9E-13 8.5E-18 159.9 4.3 254 560-838 519-785 (889)
24 KOG4237 Extracellular matrix p 99.3 1.6E-13 3.4E-18 139.6 0.0 261 554-834 59-357 (498)
25 TIGR03015 pepcterm_ATPase puta 99.2 1.1E-09 2.4E-14 116.0 22.0 182 201-387 43-242 (269)
26 TIGR02928 orc1/cdc6 family rep 99.2 6.1E-09 1.3E-13 115.6 29.0 301 173-493 14-351 (365)
27 COG2909 MalT ATP-dependent tra 99.2 1.9E-09 4.2E-14 121.6 22.6 298 173-519 18-340 (894)
28 cd00116 LRR_RI Leucine-rich re 99.2 1.9E-12 4E-17 141.4 -1.9 113 561-673 20-150 (319)
29 KOG4237 Extracellular matrix p 99.2 1.3E-12 2.7E-17 133.1 -3.0 257 569-834 51-333 (498)
30 PF01637 Arch_ATPase: Archaeal 99.2 1.7E-10 3.6E-15 119.7 11.4 195 176-382 1-233 (234)
31 PRK00080 ruvB Holliday junctio 99.1 4.3E-09 9.2E-14 114.1 20.1 278 173-492 24-310 (328)
32 KOG0532 Leucine-rich repeat (L 99.1 4.5E-12 9.7E-17 135.1 -3.5 196 561-810 72-270 (722)
33 TIGR00635 ruvB Holliday juncti 99.1 4.4E-09 9.5E-14 113.4 19.1 275 174-492 4-289 (305)
34 cd00116 LRR_RI Leucine-rich re 99.1 2E-11 4.2E-16 133.4 -0.2 129 543-673 25-178 (319)
35 PF05729 NACHT: NACHT domain 99.1 1.4E-09 3.1E-14 105.9 12.2 144 202-350 1-163 (166)
36 KOG4341 F-box protein containi 98.9 1.3E-10 2.7E-15 119.9 -3.0 313 588-948 139-465 (483)
37 KOG0532 Leucine-rich repeat (L 98.9 9E-11 2E-15 125.3 -4.5 138 548-691 105-242 (722)
38 PTZ00112 origin recognition co 98.9 9.1E-08 2E-12 109.1 18.3 214 173-388 754-987 (1164)
39 PF14580 LRR_9: Leucine-rich r 98.8 2E-09 4.4E-14 102.6 3.9 127 560-692 15-149 (175)
40 PRK06893 DNA replication initi 98.8 2.2E-07 4.8E-12 94.7 17.3 153 202-385 40-205 (229)
41 PTZ00202 tuzin; Provisional 98.8 1.9E-06 4.1E-11 91.4 23.4 171 168-350 256-434 (550)
42 COG4886 Leucine-rich repeat (L 98.7 8E-09 1.7E-13 116.1 5.0 199 567-818 96-295 (394)
43 PRK13342 recombination factor 98.7 3.5E-07 7.6E-12 102.3 16.9 177 174-384 12-197 (413)
44 KOG3207 Beta-tubulin folding c 98.7 4.5E-09 9.8E-14 109.2 1.4 209 541-790 121-340 (505)
45 PF14580 LRR_9: Leucine-rich r 98.7 1.9E-08 4.2E-13 95.9 5.1 120 541-666 19-146 (175)
46 COG3899 Predicted ATPase [Gene 98.7 7.2E-07 1.6E-11 107.5 19.6 257 176-444 2-325 (849)
47 TIGR03420 DnaA_homol_Hda DnaA 98.7 6.2E-07 1.3E-11 92.1 16.5 171 179-386 22-204 (226)
48 PRK07003 DNA polymerase III su 98.7 1.5E-06 3.3E-11 99.1 20.4 184 174-384 16-222 (830)
49 PRK14961 DNA polymerase III su 98.7 1.3E-06 2.8E-11 95.8 19.5 180 174-380 16-217 (363)
50 COG2256 MGS1 ATPase related to 98.6 2.4E-07 5.1E-12 96.4 12.0 153 199-378 46-207 (436)
51 PRK04195 replication factor C 98.6 3.4E-06 7.4E-11 96.3 22.7 248 174-463 14-272 (482)
52 PF13401 AAA_22: AAA domain; P 98.6 6.2E-08 1.3E-12 89.9 6.8 118 200-319 3-125 (131)
53 KOG1259 Nischarin, modulator o 98.6 6.7E-09 1.5E-13 102.2 -0.2 127 560-692 280-408 (490)
54 PRK14949 DNA polymerase III su 98.6 1.6E-06 3.5E-11 100.9 18.5 183 174-383 16-220 (944)
55 PRK12402 replication factor C 98.6 2E-06 4.4E-11 94.4 18.1 198 174-382 15-225 (337)
56 KOG1909 Ran GTPase-activating 98.6 1.2E-08 2.7E-13 103.2 0.4 238 559-834 25-309 (382)
57 PRK05564 DNA polymerase III su 98.6 2.5E-06 5.3E-11 91.9 17.9 179 174-382 4-189 (313)
58 COG1474 CDC6 Cdc6-related prot 98.6 4.7E-06 1E-10 90.1 19.9 207 175-384 18-239 (366)
59 PF05496 RuvB_N: Holliday junc 98.6 1.2E-06 2.5E-11 85.4 13.4 178 174-384 24-222 (233)
60 PRK12323 DNA polymerase III su 98.5 1.8E-06 4E-11 97.2 16.7 183 174-383 16-225 (700)
61 PRK14963 DNA polymerase III su 98.5 4.1E-07 9E-12 102.7 11.8 197 174-380 14-214 (504)
62 PF13191 AAA_16: AAA ATPase do 98.5 1.1E-07 2.4E-12 94.3 6.6 77 175-256 1-82 (185)
63 PRK14960 DNA polymerase III su 98.5 2.9E-06 6.3E-11 95.8 18.0 181 174-381 15-217 (702)
64 KOG1259 Nischarin, modulator o 98.5 1.6E-08 3.4E-13 99.7 -0.7 132 539-676 282-415 (490)
65 PRK00440 rfc replication facto 98.5 5.6E-06 1.2E-10 90.2 18.3 182 174-381 17-201 (319)
66 cd00009 AAA The AAA+ (ATPases 98.5 1.2E-06 2.7E-11 83.2 11.7 125 177-321 1-131 (151)
67 PF13173 AAA_14: AAA domain 98.5 8.5E-07 1.8E-11 81.5 9.6 119 202-342 3-127 (128)
68 PLN03025 replication factor C 98.5 4.1E-06 8.9E-11 90.4 16.5 181 174-379 13-196 (319)
69 PRK06645 DNA polymerase III su 98.5 8.3E-06 1.8E-10 91.8 19.0 198 174-380 21-226 (507)
70 PRK14957 DNA polymerase III su 98.5 6.1E-06 1.3E-10 93.4 18.0 185 174-385 16-223 (546)
71 PRK14956 DNA polymerase III su 98.4 3.7E-06 8E-11 92.5 14.9 195 174-380 18-219 (484)
72 PRK08691 DNA polymerase III su 98.4 5.4E-06 1.2E-10 94.7 16.7 182 174-382 16-219 (709)
73 KOG2028 ATPase related to the 98.4 4.9E-06 1.1E-10 84.8 14.5 157 199-377 160-330 (554)
74 KOG3207 Beta-tubulin folding c 98.4 1.2E-07 2.6E-12 98.9 2.5 38 775-813 245-284 (505)
75 PRK14964 DNA polymerase III su 98.4 9.2E-06 2E-10 90.6 17.4 181 174-380 13-214 (491)
76 PRK07994 DNA polymerase III su 98.4 8.5E-06 1.8E-10 93.7 17.6 194 174-383 16-220 (647)
77 COG4886 Leucine-rich repeat (L 98.4 2.3E-07 5E-12 104.3 4.9 122 564-689 116-238 (394)
78 KOG1909 Ran GTPase-activating 98.4 9.3E-09 2E-13 104.1 -5.7 257 583-891 26-310 (382)
79 PRK14962 DNA polymerase III su 98.4 9E-06 2E-10 91.2 16.9 201 174-401 14-240 (472)
80 PRK14951 DNA polymerase III su 98.4 1.1E-05 2.4E-10 92.6 17.9 182 174-382 16-224 (618)
81 TIGR02903 spore_lon_C ATP-depe 98.4 0.00013 2.8E-09 85.3 27.0 202 174-385 154-397 (615)
82 PRK08727 hypothetical protein; 98.4 1.7E-05 3.8E-10 81.1 17.3 148 202-380 42-201 (233)
83 PRK14958 DNA polymerase III su 98.4 1.2E-05 2.6E-10 91.3 17.5 182 174-381 16-218 (509)
84 TIGR02397 dnaX_nterm DNA polym 98.3 2.7E-05 5.8E-10 86.2 19.9 183 174-384 14-219 (355)
85 PRK08903 DnaA regulatory inact 98.3 1.3E-05 2.7E-10 82.3 15.8 171 177-387 22-203 (227)
86 PRK07940 DNA polymerase III su 98.3 1.5E-05 3.2E-10 87.3 16.8 183 174-383 5-213 (394)
87 PRK13341 recombination factor 98.3 6.9E-06 1.5E-10 96.6 14.9 172 174-378 28-212 (725)
88 PRK05896 DNA polymerase III su 98.3 1.2E-05 2.5E-10 91.1 15.9 196 174-385 16-223 (605)
89 PRK08084 DNA replication initi 98.3 2.4E-05 5.2E-10 80.2 17.0 172 176-384 25-210 (235)
90 cd01128 rho_factor Transcripti 98.3 1E-06 2.2E-11 89.9 6.7 88 201-289 16-112 (249)
91 PRK09112 DNA polymerase III su 98.3 1.8E-05 3.9E-10 85.4 16.6 197 173-384 22-241 (351)
92 PRK09087 hypothetical protein; 98.3 1.1E-05 2.3E-10 81.8 13.9 141 202-383 45-195 (226)
93 PRK14969 DNA polymerase III su 98.3 2.5E-05 5.4E-10 89.4 17.6 184 174-383 16-221 (527)
94 TIGR00678 holB DNA polymerase 98.3 2.7E-05 5.9E-10 77.1 15.5 90 279-378 95-186 (188)
95 PRK07471 DNA polymerase III su 98.3 4.1E-05 8.9E-10 83.2 18.0 192 174-384 19-239 (365)
96 PF00308 Bac_DnaA: Bacterial d 98.3 2.2E-05 4.7E-10 79.2 14.9 163 200-382 33-207 (219)
97 KOG0989 Replication factor C, 98.2 1.9E-05 4.1E-10 79.3 13.9 182 174-376 36-223 (346)
98 PRK14955 DNA polymerase III su 98.2 2.5E-05 5.5E-10 86.7 16.6 199 174-381 16-226 (397)
99 PF05621 TniB: Bacterial TniB 98.2 3.3E-05 7.1E-10 79.2 15.9 197 180-379 43-257 (302)
100 PRK09111 DNA polymerase III su 98.2 3.7E-05 7.9E-10 88.7 18.2 197 174-383 24-233 (598)
101 PRK05642 DNA replication initi 98.2 4.8E-05 1E-09 77.8 16.7 154 202-386 46-211 (234)
102 KOG2227 Pre-initiation complex 98.2 2.4E-05 5.2E-10 83.1 14.6 224 172-399 148-386 (529)
103 PRK14952 DNA polymerase III su 98.2 5.8E-05 1.3E-09 86.5 18.7 186 174-386 13-223 (584)
104 PLN03150 hypothetical protein; 98.2 3.4E-06 7.4E-11 99.3 9.0 103 566-670 420-525 (623)
105 PRK14959 DNA polymerase III su 98.2 4.9E-05 1.1E-09 86.7 17.8 187 174-387 16-225 (624)
106 PRK14950 DNA polymerase III su 98.2 3.7E-05 8.1E-10 89.7 17.0 195 174-383 16-221 (585)
107 PF13855 LRR_8: Leucine rich r 98.1 3.3E-06 7.2E-11 65.8 5.1 57 588-647 2-60 (61)
108 PRK09376 rho transcription ter 98.1 4.6E-06 9.9E-11 88.4 7.5 99 185-289 158-265 (416)
109 PRK07764 DNA polymerase III su 98.1 8.8E-05 1.9E-09 88.6 19.1 179 174-380 15-218 (824)
110 COG3903 Predicted ATPase [Gene 98.1 3.7E-06 8E-11 88.5 6.4 235 200-445 13-257 (414)
111 TIGR01242 26Sp45 26S proteasom 98.1 2.4E-05 5.2E-10 86.2 13.1 181 172-377 120-328 (364)
112 PRK11331 5-methylcytosine-spec 98.1 1.4E-05 3E-10 86.9 10.6 119 174-304 175-297 (459)
113 PRK08451 DNA polymerase III su 98.1 0.00017 3.6E-09 81.5 19.4 179 174-383 14-218 (535)
114 PLN03150 hypothetical protein; 98.1 5E-06 1.1E-10 97.9 7.8 100 588-689 419-521 (623)
115 PRK14970 DNA polymerase III su 98.1 0.00014 3E-09 80.5 18.8 180 174-380 17-206 (367)
116 PF13855 LRR_8: Leucine rich r 98.1 4E-06 8.8E-11 65.4 4.7 59 564-625 1-61 (61)
117 PRK14087 dnaA chromosomal repl 98.1 4.6E-05 9.9E-10 85.5 14.8 169 201-385 141-321 (450)
118 PRK14953 DNA polymerase III su 98.1 0.00021 4.5E-09 80.9 20.0 183 174-383 16-220 (486)
119 PRK07133 DNA polymerase III su 98.1 0.00015 3.2E-09 84.2 19.0 182 174-383 18-220 (725)
120 PRK14954 DNA polymerase III su 98.1 9.8E-05 2.1E-09 85.3 17.2 194 174-378 16-223 (620)
121 PHA02544 44 clamp loader, smal 98.1 5.9E-05 1.3E-09 81.8 14.6 148 174-348 21-171 (316)
122 KOG2982 Uncharacterized conser 98.0 3.6E-06 7.8E-11 83.5 4.2 226 568-831 49-287 (418)
123 KOG2120 SCF ubiquitin ligase, 98.0 1.8E-07 3.8E-12 92.6 -4.9 162 738-914 205-374 (419)
124 CHL00181 cbbX CbbX; Provisiona 98.0 0.00029 6.3E-09 74.2 18.7 137 202-354 60-213 (287)
125 PRK06305 DNA polymerase III su 98.0 0.00023 5E-09 80.0 19.0 181 174-382 17-222 (451)
126 PF14516 AAA_35: AAA-like doma 98.0 0.0016 3.5E-08 70.4 24.8 202 172-390 9-246 (331)
127 PRK14971 DNA polymerase III su 98.0 0.0002 4.4E-09 83.3 18.7 180 174-380 17-219 (614)
128 KOG4341 F-box protein containi 98.0 2E-07 4.4E-12 96.7 -5.3 291 564-895 138-442 (483)
129 PRK14948 DNA polymerase III su 98.0 0.00029 6.2E-09 82.0 19.4 196 174-383 16-222 (620)
130 KOG0531 Protein phosphatase 1, 98.0 8.7E-07 1.9E-11 99.6 -1.3 120 564-689 72-192 (414)
131 TIGR00767 rho transcription te 97.9 3.2E-05 6.9E-10 82.7 9.4 88 201-289 168-264 (415)
132 TIGR02881 spore_V_K stage V sp 97.9 0.0002 4.2E-09 75.0 15.4 162 175-352 7-193 (261)
133 TIGR02880 cbbX_cfxQ probable R 97.9 0.00032 6.9E-09 74.0 16.6 134 203-352 60-210 (284)
134 PRK06647 DNA polymerase III su 97.9 0.00044 9.6E-09 79.5 19.0 193 174-382 16-219 (563)
135 KOG2543 Origin recognition com 97.9 0.00061 1.3E-08 70.9 17.9 167 173-349 5-192 (438)
136 COG2255 RuvB Holliday junction 97.9 0.00028 6.2E-09 70.3 14.7 175 174-381 26-221 (332)
137 TIGR03345 VI_ClpV1 type VI sec 97.9 0.00013 2.8E-09 88.4 15.0 154 174-350 187-363 (852)
138 PRK14965 DNA polymerase III su 97.9 0.00034 7.3E-09 81.3 17.9 182 174-383 16-221 (576)
139 PRK14088 dnaA chromosomal repl 97.9 0.00025 5.5E-09 79.6 16.2 162 201-381 130-303 (440)
140 TIGR00362 DnaA chromosomal rep 97.9 0.0004 8.7E-09 77.9 17.7 161 201-381 136-308 (405)
141 PF05673 DUF815: Protein of un 97.9 0.00032 7E-09 69.6 14.7 127 170-323 23-154 (249)
142 PRK06620 hypothetical protein; 97.9 0.00024 5.1E-09 71.4 13.8 134 202-380 45-186 (214)
143 PRK03992 proteasome-activating 97.9 0.00011 2.4E-09 81.3 12.2 160 173-352 130-317 (389)
144 PRK05563 DNA polymerase III su 97.9 0.0008 1.7E-08 77.8 19.6 179 174-380 16-217 (559)
145 KOG0531 Protein phosphatase 1, 97.8 3.3E-06 7.2E-11 94.9 -0.2 102 585-692 70-171 (414)
146 PF12799 LRR_4: Leucine Rich r 97.8 2.4E-05 5.1E-10 55.7 4.2 38 614-652 2-39 (44)
147 PRK00149 dnaA chromosomal repl 97.8 0.00053 1.2E-08 77.9 17.5 161 201-381 148-320 (450)
148 PRK12422 chromosomal replicati 97.8 0.0011 2.3E-08 74.3 18.9 154 201-376 141-306 (445)
149 PRK15386 type III secretion pr 97.8 6.7E-05 1.5E-09 80.7 8.5 64 583-654 48-112 (426)
150 KOG4579 Leucine-rich repeat (L 97.8 4.4E-06 9.5E-11 73.3 -0.6 106 567-676 30-139 (177)
151 KOG0991 Replication factor C, 97.7 0.00056 1.2E-08 65.8 13.1 105 174-305 27-138 (333)
152 PRK14086 dnaA chromosomal repl 97.7 0.0016 3.4E-08 74.3 19.0 159 202-380 315-485 (617)
153 PRK07399 DNA polymerase III su 97.7 0.0015 3.2E-08 69.7 17.5 197 174-383 4-221 (314)
154 PF12799 LRR_4: Leucine Rich r 97.7 4.4E-05 9.5E-10 54.3 4.0 40 587-629 1-40 (44)
155 TIGR02639 ClpA ATP-dependent C 97.7 0.00037 8.1E-09 83.9 14.5 155 174-350 182-358 (731)
156 COG0593 DnaA ATPase involved i 97.7 0.0016 3.5E-08 70.4 17.4 137 200-355 112-262 (408)
157 PRK15386 type III secretion pr 97.7 4.7E-05 1E-09 81.9 5.8 61 563-630 51-112 (426)
158 PF00004 AAA: ATPase family as 97.7 0.00016 3.4E-09 67.0 8.4 96 204-319 1-111 (132)
159 PRK05707 DNA polymerase III su 97.7 0.00098 2.1E-08 71.5 15.1 97 279-383 105-203 (328)
160 KOG2982 Uncharacterized conser 97.6 8.4E-06 1.8E-10 81.0 -0.8 77 589-671 47-132 (418)
161 PRK10536 hypothetical protein; 97.6 0.001 2.2E-08 67.1 13.5 136 174-321 55-214 (262)
162 TIGR00763 lon ATP-dependent pr 97.6 0.0022 4.8E-08 77.8 19.0 166 173-350 319-505 (775)
163 COG3267 ExeA Type II secretory 97.6 0.0032 6.8E-08 62.4 16.1 179 200-385 50-247 (269)
164 CHL00095 clpC Clp protease ATP 97.6 0.00065 1.4E-08 82.9 14.2 155 174-349 179-353 (821)
165 PRK08116 hypothetical protein; 97.6 0.00034 7.4E-09 72.9 10.2 103 202-319 115-220 (268)
166 COG0542 clpA ATP-binding subun 97.6 0.0019 4E-08 75.2 16.8 123 174-307 491-620 (786)
167 KOG2120 SCF ubiquitin ligase, 97.5 9.4E-07 2E-11 87.6 -8.9 163 744-917 186-352 (419)
168 smart00382 AAA ATPases associa 97.5 0.00049 1.1E-08 64.6 9.9 88 202-293 3-91 (148)
169 KOG4579 Leucine-rich repeat (L 97.5 2.2E-05 4.9E-10 68.9 0.1 93 560-656 49-142 (177)
170 KOG1859 Leucine-rich repeat pr 97.5 4.6E-06 9.9E-11 92.5 -5.2 118 566-690 166-286 (1096)
171 PRK08769 DNA polymerase III su 97.5 0.0038 8.3E-08 66.3 16.8 96 279-384 112-209 (319)
172 TIGR00602 rad24 checkpoint pro 97.5 0.0009 2E-08 77.3 12.8 51 173-224 83-133 (637)
173 TIGR03689 pup_AAA proteasome A 97.5 0.0012 2.5E-08 74.3 13.2 167 174-350 182-378 (512)
174 PF13177 DNA_pol3_delta2: DNA 97.5 0.0015 3.2E-08 62.6 12.1 139 178-338 1-162 (162)
175 PRK10787 DNA-binding ATP-depen 97.4 0.0011 2.3E-08 79.5 13.2 166 173-350 321-506 (784)
176 TIGR03346 chaperone_ClpB ATP-d 97.4 0.001 2.2E-08 81.5 13.2 156 174-350 173-349 (852)
177 COG0466 Lon ATP-dependent Lon 97.4 0.0016 3.5E-08 73.5 13.4 167 172-350 321-508 (782)
178 PTZ00454 26S protease regulato 97.4 0.0025 5.5E-08 70.2 14.8 158 174-351 145-330 (398)
179 TIGR03345 VI_ClpV1 type VI sec 97.4 0.0017 3.8E-08 78.8 14.7 136 174-319 566-718 (852)
180 PF10443 RNA12: RNA12 protein; 97.4 0.011 2.3E-07 63.9 18.8 212 179-402 1-298 (431)
181 KOG2004 Mitochondrial ATP-depe 97.4 0.0072 1.6E-07 68.1 17.9 167 172-350 409-596 (906)
182 PTZ00361 26 proteosome regulat 97.4 0.00071 1.5E-08 75.0 10.3 158 174-351 183-368 (438)
183 PRK10865 protein disaggregatio 97.4 0.0017 3.6E-08 79.2 14.4 154 174-350 178-354 (857)
184 TIGR02640 gas_vesic_GvpN gas v 97.4 0.0055 1.2E-07 64.0 16.4 151 181-349 9-197 (262)
185 PRK08058 DNA polymerase III su 97.4 0.0041 8.9E-08 67.2 15.6 148 176-349 7-181 (329)
186 PF01695 IstB_IS21: IstB-like 97.4 0.00017 3.6E-09 70.1 4.1 99 202-319 48-149 (178)
187 PRK11034 clpA ATP-dependent Cl 97.3 0.003 6.5E-08 75.2 15.0 156 175-350 187-362 (758)
188 COG1373 Predicted ATPase (AAA+ 97.3 0.0034 7.4E-08 69.5 14.6 134 181-346 24-163 (398)
189 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0041 8.9E-08 76.2 16.6 136 174-319 565-717 (852)
190 PRK10865 protein disaggregatio 97.3 0.0032 6.9E-08 76.9 15.4 136 174-319 568-720 (857)
191 PRK08181 transposase; Validate 97.3 0.0013 2.7E-08 68.2 10.3 100 203-320 108-209 (269)
192 KOG1859 Leucine-rich repeat pr 97.3 7.3E-06 1.6E-10 90.9 -7.0 126 541-673 164-292 (1096)
193 PF04665 Pox_A32: Poxvirus A32 97.3 0.0011 2.4E-08 66.6 8.9 112 202-319 14-137 (241)
194 PRK12377 putative replication 97.3 0.00044 9.5E-09 70.6 6.0 101 202-319 102-205 (248)
195 CHL00176 ftsH cell division pr 97.3 0.0045 9.9E-08 72.3 15.0 177 174-375 183-386 (638)
196 KOG3665 ZYG-1-like serine/thre 97.3 0.00023 5.1E-09 83.6 4.5 128 541-673 122-263 (699)
197 KOG1514 Origin recognition com 97.3 0.012 2.7E-07 66.3 17.4 207 174-387 396-625 (767)
198 TIGR02639 ClpA ATP-dependent C 97.2 0.0036 7.7E-08 75.6 14.4 122 174-307 454-580 (731)
199 PRK06090 DNA polymerase III su 97.2 0.013 2.8E-07 62.3 16.6 93 279-383 107-201 (319)
200 PRK06871 DNA polymerase III su 97.2 0.017 3.6E-07 61.5 17.4 179 183-380 11-200 (325)
201 PF02562 PhoH: PhoH-like prote 97.2 0.0012 2.6E-08 64.8 8.1 132 178-321 4-157 (205)
202 COG2812 DnaX DNA polymerase II 97.2 0.00082 1.8E-08 75.0 7.7 189 174-378 16-215 (515)
203 PRK08939 primosomal protein Dn 97.1 0.0021 4.5E-08 68.2 9.9 122 178-319 135-260 (306)
204 COG1223 Predicted ATPase (AAA+ 97.1 0.005 1.1E-07 60.6 11.3 158 174-351 121-298 (368)
205 PRK08118 topology modulation p 97.1 0.00023 5E-09 68.5 2.1 34 203-236 3-37 (167)
206 PRK07952 DNA replication prote 97.1 0.0032 6.8E-08 64.2 10.4 118 182-319 84-204 (244)
207 COG5238 RNA1 Ran GTPase-activa 97.1 0.00036 7.8E-09 68.8 3.1 45 630-674 86-134 (388)
208 PRK04132 replication factor C 97.1 0.014 3E-07 69.8 16.6 153 209-381 574-729 (846)
209 PRK06921 hypothetical protein; 97.0 0.0025 5.3E-08 66.4 9.0 100 201-319 117-224 (266)
210 PRK06526 transposase; Provisio 97.0 0.0015 3.3E-08 67.2 7.3 100 202-320 99-201 (254)
211 COG5238 RNA1 Ran GTPase-activa 97.0 0.00079 1.7E-08 66.5 4.7 91 559-650 25-133 (388)
212 PRK13531 regulatory ATPase Rav 97.0 0.0035 7.7E-08 69.2 10.3 152 175-349 21-193 (498)
213 TIGR01241 FtsH_fam ATP-depende 97.0 0.014 3E-07 67.3 15.5 185 173-382 54-266 (495)
214 KOG3665 ZYG-1-like serine/thre 97.0 0.00035 7.6E-09 82.1 2.4 32 657-689 170-201 (699)
215 KOG2228 Origin recognition com 97.0 0.0095 2.1E-07 61.2 12.1 172 175-350 25-219 (408)
216 smart00763 AAA_PrkA PrkA AAA d 97.0 0.00072 1.6E-08 71.8 4.4 50 175-224 52-101 (361)
217 PRK11889 flhF flagellar biosyn 97.0 0.0075 1.6E-07 64.6 11.9 114 200-315 240-357 (436)
218 COG0470 HolB ATPase involved i 97.0 0.0049 1.1E-07 67.3 11.2 146 175-340 2-171 (325)
219 PRK07993 DNA polymerase III su 97.0 0.031 6.7E-07 60.2 16.8 94 279-381 107-202 (334)
220 PRK04296 thymidine kinase; Pro 96.9 0.0024 5.2E-08 63.0 7.7 113 202-321 3-117 (190)
221 PRK06964 DNA polymerase III su 96.9 0.021 4.5E-07 61.4 15.2 93 279-383 131-225 (342)
222 PRK09183 transposase/IS protei 96.9 0.0041 8.8E-08 64.6 9.1 100 202-319 103-205 (259)
223 PF00158 Sigma54_activat: Sigm 96.9 0.0054 1.2E-07 58.8 9.0 131 176-319 1-143 (168)
224 PRK11034 clpA ATP-dependent Cl 96.8 0.0085 1.9E-07 71.4 12.4 120 174-306 458-583 (758)
225 PF07693 KAP_NTPase: KAP famil 96.8 0.072 1.6E-06 58.0 18.7 43 180-225 2-44 (325)
226 CHL00095 clpC Clp protease ATP 96.8 0.0054 1.2E-07 75.0 10.7 136 174-319 509-661 (821)
227 KOG2035 Replication factor C, 96.8 0.011 2.3E-07 59.1 10.5 206 176-403 15-258 (351)
228 KOG1644 U2-associated snRNP A' 96.8 0.0017 3.7E-08 61.6 4.9 79 589-672 44-125 (233)
229 KOG1644 U2-associated snRNP A' 96.8 0.002 4.3E-08 61.1 5.3 97 566-667 44-147 (233)
230 PRK12608 transcription termina 96.8 0.0086 1.9E-07 64.1 10.7 102 182-289 119-229 (380)
231 KOG0744 AAA+-type ATPase [Post 96.8 0.023 4.9E-07 58.1 13.0 79 202-290 178-260 (423)
232 PF14532 Sigma54_activ_2: Sigm 96.8 0.002 4.4E-08 59.9 5.3 107 177-319 1-109 (138)
233 PF00910 RNA_helicase: RNA hel 96.8 0.0029 6.3E-08 55.7 6.0 21 204-224 1-21 (107)
234 PRK06835 DNA replication prote 96.8 0.0033 7.3E-08 67.2 7.4 102 202-319 184-288 (329)
235 PRK07261 topology modulation p 96.7 0.0031 6.8E-08 61.0 6.5 65 203-290 2-67 (171)
236 KOG0741 AAA+-type ATPase [Post 96.7 0.034 7.3E-07 60.6 14.4 150 198-373 535-704 (744)
237 PTZ00494 tuzin-like protein; P 96.7 0.57 1.2E-05 50.7 23.2 170 169-350 366-544 (664)
238 TIGR02237 recomb_radB DNA repa 96.7 0.0055 1.2E-07 61.9 8.4 49 199-250 10-58 (209)
239 COG1484 DnaC DNA replication p 96.7 0.0042 9E-08 64.1 7.4 81 201-298 105-185 (254)
240 KOG0733 Nuclear AAA ATPase (VC 96.7 0.028 6.1E-07 62.4 13.5 158 174-351 190-375 (802)
241 TIGR02902 spore_lonB ATP-depen 96.7 0.01 2.3E-07 68.4 11.2 44 175-224 66-109 (531)
242 PRK05541 adenylylsulfate kinas 96.7 0.0071 1.5E-07 59.1 8.5 37 200-238 6-42 (176)
243 PRK08699 DNA polymerase III su 96.7 0.019 4.2E-07 61.5 12.4 71 279-349 112-184 (325)
244 cd01120 RecA-like_NTPases RecA 96.6 0.01 2.2E-07 57.1 9.5 40 203-244 1-40 (165)
245 KOG1969 DNA replication checkp 96.6 0.0065 1.4E-07 68.6 8.7 90 198-305 323-412 (877)
246 PRK05800 cobU adenosylcobinami 96.6 0.0037 8.1E-08 60.1 6.0 154 203-380 3-169 (170)
247 PRK09361 radB DNA repair and r 96.6 0.0068 1.5E-07 62.0 8.2 45 200-247 22-66 (225)
248 PF07728 AAA_5: AAA domain (dy 96.6 0.00082 1.8E-08 62.8 1.2 88 204-304 2-89 (139)
249 COG2607 Predicted ATPase (AAA+ 96.5 0.088 1.9E-06 51.8 14.5 122 171-319 57-182 (287)
250 COG2884 FtsE Predicted ATPase 96.5 0.043 9.4E-07 51.9 11.9 57 271-327 146-204 (223)
251 COG1875 NYN ribonuclease and A 96.5 0.012 2.5E-07 61.3 8.9 134 176-320 226-388 (436)
252 PHA02244 ATPase-like protein 96.5 0.015 3.2E-07 62.1 9.8 22 203-224 121-142 (383)
253 cd01394 radB RadB. The archaea 96.5 0.0074 1.6E-07 61.4 7.5 43 200-244 18-60 (218)
254 TIGR01243 CDC48 AAA family ATP 96.5 0.022 4.7E-07 69.1 12.7 180 174-378 178-382 (733)
255 cd01123 Rad51_DMC1_radA Rad51_ 96.5 0.015 3.3E-07 59.9 9.9 89 200-289 18-124 (235)
256 cd00561 CobA_CobO_BtuR ATP:cor 96.4 0.014 3E-07 54.8 8.5 116 202-320 3-138 (159)
257 cd03214 ABC_Iron-Siderophores_ 96.4 0.03 6.5E-07 54.9 11.3 119 202-323 26-161 (180)
258 PLN00020 ribulose bisphosphate 96.4 0.063 1.4E-06 57.0 13.8 26 199-224 146-171 (413)
259 KOG0735 AAA+-type ATPase [Post 96.4 0.03 6.5E-07 63.2 11.9 133 200-350 430-586 (952)
260 PF13207 AAA_17: AAA domain; P 96.4 0.0025 5.3E-08 57.9 3.1 22 203-224 1-22 (121)
261 CHL00195 ycf46 Ycf46; Provisio 96.4 0.035 7.7E-07 62.8 12.8 159 174-352 228-407 (489)
262 KOG2739 Leucine-rich acidic nu 96.4 0.0013 2.9E-08 65.2 1.3 81 566-647 45-127 (260)
263 PF08423 Rad51: Rad51; InterP 96.4 0.011 2.4E-07 61.2 8.1 56 201-257 38-97 (256)
264 COG1136 SalX ABC-type antimicr 96.4 0.044 9.6E-07 54.5 11.9 56 271-326 151-209 (226)
265 COG1222 RPT1 ATP-dependent 26S 96.4 0.13 2.8E-06 53.8 15.4 187 175-387 152-371 (406)
266 cd01393 recA_like RecA is a b 96.4 0.015 3.3E-07 59.5 9.2 90 200-290 18-124 (226)
267 TIGR01650 PD_CobS cobaltochela 96.4 0.14 2.9E-06 54.3 16.0 157 176-350 47-233 (327)
268 cd01131 PilT Pilus retraction 96.3 0.0086 1.9E-07 59.6 6.7 111 202-324 2-113 (198)
269 cd03247 ABCC_cytochrome_bd The 96.3 0.022 4.8E-07 55.7 9.6 117 202-324 29-161 (178)
270 cd03238 ABC_UvrA The excision 96.3 0.031 6.8E-07 54.0 10.4 121 202-334 22-161 (176)
271 cd03228 ABCC_MRP_Like The MRP 96.3 0.033 7.1E-07 54.1 10.4 117 202-325 29-160 (171)
272 KOG1051 Chaperone HSP104 and r 96.2 0.027 5.9E-07 66.8 11.2 136 174-320 562-710 (898)
273 PRK12724 flagellar biosynthesi 96.2 0.03 6.6E-07 61.0 10.7 102 200-305 222-326 (432)
274 PRK15455 PrkA family serine pr 96.2 0.0032 7E-08 70.3 3.4 50 175-224 77-126 (644)
275 TIGR01243 CDC48 AAA family ATP 96.2 0.084 1.8E-06 64.1 15.7 157 174-350 453-635 (733)
276 PF13671 AAA_33: AAA domain; P 96.2 0.02 4.3E-07 53.7 8.2 22 203-224 1-22 (143)
277 PRK13695 putative NTPase; Prov 96.2 0.0083 1.8E-07 58.4 5.8 22 203-224 2-23 (174)
278 TIGR03499 FlhF flagellar biosy 96.2 0.017 3.6E-07 60.9 8.5 87 200-289 193-281 (282)
279 cd00544 CobU Adenosylcobinamid 96.2 0.014 3.1E-07 56.0 7.2 149 204-378 2-167 (169)
280 TIGR02238 recomb_DMC1 meiotic 96.2 0.014 2.9E-07 62.2 7.8 58 200-258 95-156 (313)
281 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.2 0.046 9.9E-07 51.2 10.5 104 202-324 27-131 (144)
282 COG0542 clpA ATP-binding subun 96.2 0.079 1.7E-06 62.1 14.3 154 175-350 171-346 (786)
283 PF13604 AAA_30: AAA domain; P 96.1 0.014 3E-07 58.0 7.0 105 202-321 19-132 (196)
284 PRK12726 flagellar biosynthesi 96.1 0.052 1.1E-06 58.2 11.5 91 199-291 204-296 (407)
285 PRK12723 flagellar biosynthesi 96.1 0.043 9.4E-07 60.0 11.1 106 200-307 173-283 (388)
286 PRK05703 flhF flagellar biosyn 96.1 0.053 1.1E-06 60.5 12.0 103 201-305 221-326 (424)
287 PF00448 SRP54: SRP54-type pro 96.1 0.018 3.8E-07 56.9 7.4 89 201-291 1-94 (196)
288 cd03216 ABC_Carb_Monos_I This 96.1 0.032 7E-07 53.6 9.0 116 202-324 27-146 (163)
289 TIGR01817 nifA Nif-specific re 96.0 0.1 2.2E-06 60.9 14.7 134 172-319 194-340 (534)
290 KOG0731 AAA+-type ATPase conta 96.0 0.1 2.2E-06 60.8 14.1 182 174-379 311-520 (774)
291 PF07724 AAA_2: AAA domain (Cd 96.0 0.0056 1.2E-07 58.9 3.5 42 201-244 3-45 (171)
292 PRK00771 signal recognition pa 96.0 0.058 1.3E-06 60.0 11.8 89 199-290 93-185 (437)
293 COG4608 AppF ABC-type oligopep 96.0 0.061 1.3E-06 54.5 10.8 124 202-328 40-178 (268)
294 PRK06696 uridine kinase; Valid 96.0 0.0086 1.9E-07 61.0 4.9 44 178-224 2-45 (223)
295 cd03222 ABC_RNaseL_inhibitor T 96.0 0.07 1.5E-06 51.7 10.8 102 202-324 26-136 (177)
296 PRK12727 flagellar biosynthesi 96.0 0.03 6.5E-07 62.6 9.2 90 200-291 349-439 (559)
297 COG1419 FlhF Flagellar GTP-bin 96.0 0.049 1.1E-06 58.5 10.5 105 200-307 202-310 (407)
298 cd01125 repA Hexameric Replica 95.9 0.081 1.8E-06 54.5 12.0 142 203-344 3-198 (239)
299 cd03223 ABCD_peroxisomal_ALDP 95.9 0.091 2E-06 50.6 11.6 118 202-324 28-152 (166)
300 PRK14974 cell division protein 95.9 0.059 1.3E-06 57.8 11.0 113 200-315 139-259 (336)
301 PRK14722 flhF flagellar biosyn 95.9 0.056 1.2E-06 58.6 10.9 89 201-291 137-226 (374)
302 PRK06067 flagellar accessory p 95.9 0.036 7.8E-07 57.0 9.2 87 199-290 23-130 (234)
303 KOG0730 AAA+-type ATPase [Post 95.9 0.075 1.6E-06 60.0 11.9 173 174-367 434-631 (693)
304 TIGR02239 recomb_RAD51 DNA rep 95.9 0.04 8.6E-07 58.9 9.7 58 200-258 95-156 (316)
305 PRK07132 DNA polymerase III su 95.9 0.38 8.3E-06 50.8 16.8 129 200-349 17-161 (299)
306 KOG2123 Uncharacterized conser 95.9 0.0008 1.7E-08 66.7 -2.9 99 563-666 18-123 (388)
307 TIGR02012 tigrfam_recA protein 95.9 0.02 4.4E-07 60.6 7.3 84 200-290 54-143 (321)
308 KOG0924 mRNA splicing factor A 95.9 0.075 1.6E-06 59.6 11.6 129 202-336 372-529 (1042)
309 PLN03186 DNA repair protein RA 95.9 0.036 7.8E-07 59.6 9.2 58 200-258 122-183 (342)
310 cd01133 F1-ATPase_beta F1 ATP 95.8 0.029 6.2E-07 57.8 7.9 86 202-289 70-172 (274)
311 KOG0733 Nuclear AAA ATPase (VC 95.8 0.088 1.9E-06 58.6 11.7 155 201-377 545-718 (802)
312 PRK11608 pspF phage shock prot 95.8 0.031 6.7E-07 60.4 8.5 133 175-319 7-150 (326)
313 PLN03187 meiotic recombination 95.8 0.037 8E-07 59.5 8.8 58 200-258 125-186 (344)
314 cd00983 recA RecA is a bacter 95.8 0.024 5.3E-07 60.0 7.3 84 200-290 54-143 (325)
315 cd03246 ABCC_Protease_Secretio 95.8 0.057 1.2E-06 52.5 9.5 118 202-324 29-160 (173)
316 PRK09354 recA recombinase A; P 95.7 0.027 5.8E-07 60.2 7.5 84 200-290 59-148 (349)
317 KOG2739 Leucine-rich acidic nu 95.7 0.0029 6.3E-08 62.9 0.2 91 771-863 60-154 (260)
318 cd03230 ABC_DR_subfamily_A Thi 95.7 0.054 1.2E-06 52.6 9.2 117 202-324 27-159 (173)
319 PRK04301 radA DNA repair and r 95.7 0.05 1.1E-06 58.7 9.7 57 200-257 101-161 (317)
320 COG0468 RecA RecA/RadA recombi 95.7 0.049 1.1E-06 56.3 9.0 89 198-289 57-150 (279)
321 COG4618 ArpD ABC-type protease 95.7 0.049 1.1E-06 59.5 9.2 22 202-223 363-384 (580)
322 COG1618 Predicted nucleotide k 95.7 0.0093 2E-07 54.6 3.3 25 202-226 6-30 (179)
323 PRK15429 formate hydrogenlyase 95.7 0.044 9.6E-07 66.0 10.2 134 174-319 376-520 (686)
324 PRK08233 hypothetical protein; 95.7 0.03 6.4E-07 55.1 7.3 24 201-224 3-26 (182)
325 PRK08533 flagellar accessory p 95.7 0.078 1.7E-06 54.0 10.5 48 201-252 24-71 (230)
326 cd01122 GP4d_helicase GP4d_hel 95.6 0.11 2.3E-06 54.9 11.8 52 201-255 30-81 (271)
327 cd03115 SRP The signal recogni 95.6 0.073 1.6E-06 51.7 9.7 86 203-290 2-92 (173)
328 PF03215 Rad17: Rad17 cell cyc 95.6 0.09 1.9E-06 60.0 11.6 60 175-239 20-79 (519)
329 PTZ00035 Rad51 protein; Provis 95.6 0.07 1.5E-06 57.6 10.3 58 199-257 116-177 (337)
330 cd03229 ABC_Class3 This class 95.6 0.06 1.3E-06 52.6 8.8 120 202-324 27-165 (178)
331 PF00560 LRR_1: Leucine Rich R 95.5 0.006 1.3E-07 35.9 1.0 19 615-633 2-20 (22)
332 TIGR00708 cobA cob(I)alamin ad 95.5 0.074 1.6E-06 50.6 8.8 117 202-320 6-140 (173)
333 PF08298 AAA_PrkA: PrkA AAA do 95.5 0.015 3.3E-07 61.3 4.6 51 173-223 60-110 (358)
334 PF05659 RPW8: Arabidopsis bro 95.5 0.24 5.3E-06 45.9 12.0 83 2-84 3-86 (147)
335 PF03969 AFG1_ATPase: AFG1-lik 95.5 0.042 9.1E-07 59.7 8.2 109 200-323 61-170 (362)
336 KOG1532 GTPase XAB1, interacts 95.5 0.051 1.1E-06 54.1 7.8 89 198-289 16-124 (366)
337 KOG0734 AAA+-type ATPase conta 95.5 0.079 1.7E-06 57.9 9.9 54 174-227 304-363 (752)
338 PRK10867 signal recognition pa 95.5 0.13 2.9E-06 57.1 12.1 26 199-224 98-123 (433)
339 TIGR02974 phageshock_pspF psp 95.5 0.054 1.2E-06 58.5 8.8 131 176-319 1-143 (329)
340 TIGR00959 ffh signal recogniti 95.5 0.17 3.7E-06 56.2 12.8 25 200-224 98-122 (428)
341 cd02025 PanK Pantothenate kina 95.5 0.045 9.8E-07 55.3 7.7 22 203-224 1-22 (220)
342 cd01124 KaiC KaiC is a circadi 95.4 0.035 7.5E-07 54.9 6.8 44 204-251 2-45 (187)
343 COG0572 Udk Uridine kinase [Nu 95.4 0.03 6.4E-07 55.0 5.8 78 199-281 6-85 (218)
344 TIGR02236 recomb_radA DNA repa 95.4 0.064 1.4E-06 57.8 9.1 57 200-257 94-154 (310)
345 cd03217 ABC_FeS_Assembly ABC-t 95.4 0.11 2.5E-06 51.7 10.2 52 273-324 115-168 (200)
346 COG0464 SpoVK ATPases of the A 95.3 0.25 5.3E-06 57.3 14.4 133 199-351 274-424 (494)
347 PF03308 ArgK: ArgK protein; 95.3 0.028 6.2E-07 56.4 5.5 66 182-251 14-79 (266)
348 PRK05439 pantothenate kinase; 95.3 0.086 1.9E-06 55.7 9.4 26 198-223 83-108 (311)
349 COG2842 Uncharacterized ATPase 95.3 0.45 9.7E-06 48.9 13.9 98 202-307 95-192 (297)
350 PRK06731 flhF flagellar biosyn 95.3 0.12 2.5E-06 53.7 10.2 113 201-315 75-191 (270)
351 COG1121 ZnuC ABC-type Mn/Zn tr 95.3 0.068 1.5E-06 54.1 8.1 122 202-323 31-202 (254)
352 TIGR00064 ftsY signal recognit 95.3 0.17 3.6E-06 53.0 11.4 89 200-291 71-165 (272)
353 PF00485 PRK: Phosphoribulokin 95.3 0.058 1.2E-06 53.6 7.7 80 203-284 1-87 (194)
354 PRK13539 cytochrome c biogenes 95.3 0.12 2.7E-06 51.9 10.2 62 274-338 139-202 (207)
355 PRK09270 nucleoside triphospha 95.3 0.079 1.7E-06 54.2 8.9 26 199-224 31-56 (229)
356 PRK05973 replicative DNA helic 95.2 0.21 4.5E-06 50.6 11.4 113 201-320 64-193 (237)
357 cd03369 ABCC_NFT1 Domain 2 of 95.2 0.31 6.7E-06 48.9 12.9 52 273-324 136-188 (207)
358 PF13238 AAA_18: AAA domain; P 95.2 0.014 3E-07 53.5 2.8 21 204-224 1-21 (129)
359 PRK07667 uridine kinase; Provi 95.2 0.025 5.4E-07 56.1 4.7 38 183-224 3-40 (193)
360 TIGR02858 spore_III_AA stage I 95.2 0.1 2.3E-06 54.1 9.5 115 200-324 110-233 (270)
361 cd03282 ABC_MSH4_euk MutS4 hom 95.1 0.049 1.1E-06 54.2 6.7 118 201-327 29-158 (204)
362 COG1703 ArgK Putative periplas 95.1 0.028 6E-07 57.3 4.9 56 199-254 49-104 (323)
363 cd03215 ABC_Carb_Monos_II This 95.1 0.11 2.5E-06 50.9 9.3 52 273-324 115-168 (182)
364 PRK05022 anaerobic nitric oxid 95.1 0.077 1.7E-06 61.4 9.2 135 173-319 186-331 (509)
365 PRK00889 adenylylsulfate kinas 95.1 0.11 2.5E-06 50.5 9.1 24 201-224 4-27 (175)
366 PF12775 AAA_7: P-loop contain 95.1 0.027 5.9E-07 58.8 4.9 94 183-296 22-116 (272)
367 COG0563 Adk Adenylate kinase a 95.1 0.034 7.5E-07 53.8 5.3 22 203-224 2-23 (178)
368 PRK10733 hflB ATP-dependent me 95.1 0.16 3.5E-06 60.3 11.9 157 175-351 153-336 (644)
369 COG0396 sufC Cysteine desulfur 95.1 0.37 8E-06 47.4 12.0 55 279-333 161-217 (251)
370 COG1126 GlnQ ABC-type polar am 95.1 0.31 6.7E-06 47.5 11.3 54 272-325 146-201 (240)
371 cd00267 ABC_ATPase ABC (ATP-bi 95.1 0.093 2E-06 50.0 8.2 116 202-325 26-145 (157)
372 TIGR00554 panK_bact pantothena 95.0 0.093 2E-06 55.0 8.7 25 199-223 60-84 (290)
373 cd03281 ABC_MSH5_euk MutS5 hom 95.0 0.041 8.9E-07 55.3 5.8 23 201-223 29-51 (213)
374 PTZ00088 adenylate kinase 1; P 95.0 0.022 4.7E-07 57.7 3.8 22 203-224 8-29 (229)
375 KOG0739 AAA+-type ATPase [Post 95.0 0.59 1.3E-05 47.5 13.5 97 174-291 133-236 (439)
376 TIGR03864 PQQ_ABC_ATP ABC tran 95.0 0.15 3.2E-06 52.5 10.1 60 273-334 143-205 (236)
377 cd03244 ABCC_MRP_domain2 Domai 95.0 0.27 5.9E-06 50.0 11.9 23 202-224 31-53 (221)
378 cd03251 ABCC_MsbA MsbA is an e 94.9 0.39 8.4E-06 49.4 13.1 59 274-334 150-209 (234)
379 PRK13540 cytochrome c biogenes 94.9 0.21 4.6E-06 49.8 10.8 53 273-325 138-192 (200)
380 cd03263 ABC_subfamily_A The AB 94.9 0.15 3.3E-06 51.8 9.9 52 274-325 145-197 (220)
381 cd02019 NK Nucleoside/nucleoti 94.9 0.018 3.8E-07 45.9 2.4 22 203-224 1-22 (69)
382 cd03245 ABCC_bacteriocin_expor 94.9 0.27 6E-06 49.9 11.8 23 202-224 31-53 (220)
383 KOG0728 26S proteasome regulat 94.9 0.84 1.8E-05 45.0 14.0 190 175-385 147-365 (404)
384 TIGR03881 KaiC_arch_4 KaiC dom 94.9 0.15 3.4E-06 52.1 10.0 41 200-242 19-59 (229)
385 COG1124 DppF ABC-type dipeptid 94.9 0.37 8E-06 47.9 11.7 55 272-326 151-208 (252)
386 PTZ00301 uridine kinase; Provi 94.9 0.043 9.2E-07 54.8 5.5 24 201-224 3-26 (210)
387 TIGR00235 udk uridine kinase. 94.8 0.024 5.2E-07 57.0 3.5 25 200-224 5-29 (207)
388 PRK10247 putative ABC transpor 94.8 0.32 7E-06 49.5 11.9 60 273-334 148-210 (225)
389 cd03226 ABC_cobalt_CbiO_domain 94.8 0.22 4.8E-06 49.9 10.5 23 202-224 27-49 (205)
390 PF10236 DAP3: Mitochondrial r 94.8 0.6 1.3E-05 49.9 14.2 49 331-380 258-306 (309)
391 PRK05480 uridine/cytidine kina 94.8 0.024 5.2E-07 57.2 3.5 25 200-224 5-29 (209)
392 PF08433 KTI12: Chromatin asso 94.8 0.034 7.3E-07 57.8 4.6 23 202-224 2-24 (270)
393 PF00154 RecA: recA bacterial 94.8 0.064 1.4E-06 56.7 6.6 83 201-290 53-141 (322)
394 TIGR03878 thermo_KaiC_2 KaiC d 94.8 0.065 1.4E-06 55.8 6.7 41 200-242 35-75 (259)
395 KOG2123 Uncharacterized conser 94.7 0.00076 1.7E-08 66.8 -7.1 83 774-858 39-123 (388)
396 TIGR03522 GldA_ABC_ATP gliding 94.7 0.21 4.6E-06 53.4 10.8 52 273-324 144-196 (301)
397 cd03283 ABC_MutS-like MutS-lik 94.7 0.24 5.2E-06 49.2 10.4 22 202-223 26-47 (199)
398 PRK13538 cytochrome c biogenes 94.7 0.39 8.4E-06 48.1 12.0 23 202-224 28-50 (204)
399 TIGR03877 thermo_KaiC_1 KaiC d 94.7 0.12 2.6E-06 53.1 8.5 48 200-251 20-67 (237)
400 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.7 0.22 4.8E-06 50.7 10.3 23 202-224 49-71 (224)
401 PRK04328 hypothetical protein; 94.7 0.13 2.9E-06 53.2 8.7 41 200-242 22-62 (249)
402 cd02027 APSK Adenosine 5'-phos 94.7 0.11 2.3E-06 49.1 7.3 22 203-224 1-22 (149)
403 PRK06002 fliI flagellum-specif 94.6 0.12 2.6E-06 57.2 8.5 86 201-289 165-263 (450)
404 cd03235 ABC_Metallic_Cations A 94.6 0.48 1.1E-05 47.8 12.5 23 202-224 26-48 (213)
405 TIGR00390 hslU ATP-dependent p 94.6 0.085 1.8E-06 57.3 7.1 80 174-255 12-103 (441)
406 cd03254 ABCC_Glucan_exporter_l 94.5 0.42 9.1E-06 48.9 12.1 59 274-334 151-210 (229)
407 cd01121 Sms Sms (bacterial rad 94.5 0.11 2.3E-06 56.9 7.9 82 200-289 81-167 (372)
408 cd03264 ABC_drug_resistance_li 94.5 0.3 6.4E-06 49.3 10.7 22 203-224 27-48 (211)
409 cd03237 ABC_RNaseL_inhibitor_d 94.5 0.36 7.8E-06 49.8 11.4 23 202-224 26-48 (246)
410 PRK05986 cob(I)alamin adenolsy 94.5 0.15 3.3E-06 49.3 7.9 118 201-320 22-158 (191)
411 COG1102 Cmk Cytidylate kinase 94.5 0.073 1.6E-06 49.0 5.3 44 203-259 2-45 (179)
412 PRK14723 flhF flagellar biosyn 94.5 0.24 5.2E-06 58.5 11.0 88 201-290 185-273 (767)
413 PF00006 ATP-synt_ab: ATP synt 94.5 0.14 3.1E-06 51.1 8.0 84 202-289 16-114 (215)
414 PRK06762 hypothetical protein; 94.4 0.03 6.5E-07 54.1 3.1 23 202-224 3-25 (166)
415 cd03213 ABCG_EPDR ABCG transpo 94.4 0.41 8.9E-06 47.4 11.3 23 202-224 36-58 (194)
416 TIGR03740 galliderm_ABC gallid 94.4 0.33 7.1E-06 49.5 10.8 51 274-324 136-188 (223)
417 cd03231 ABC_CcmA_heme_exporter 94.4 0.27 5.8E-06 49.1 9.9 23 202-224 27-49 (201)
418 COG1428 Deoxynucleoside kinase 94.4 0.028 6E-07 54.4 2.6 24 201-224 4-27 (216)
419 PRK06547 hypothetical protein; 94.4 0.036 7.8E-07 53.4 3.4 26 199-224 13-38 (172)
420 COG0714 MoxR-like ATPases [Gen 94.4 0.088 1.9E-06 57.2 6.9 108 175-305 25-137 (329)
421 PRK14721 flhF flagellar biosyn 94.3 0.19 4.1E-06 55.5 9.2 89 200-290 190-279 (420)
422 TIGR01420 pilT_fam pilus retra 94.3 0.12 2.7E-06 56.2 7.9 111 202-323 123-233 (343)
423 PRK06995 flhF flagellar biosyn 94.3 0.24 5.3E-06 55.6 10.2 88 201-290 256-344 (484)
424 cd03253 ABCC_ATM1_transporter 94.3 0.45 9.7E-06 49.0 11.7 60 273-334 148-208 (236)
425 PRK09580 sufC cysteine desulfu 94.3 0.45 9.8E-06 49.4 11.8 23 202-224 28-50 (248)
426 TIGR01425 SRP54_euk signal rec 94.3 0.56 1.2E-05 51.9 12.8 26 199-224 98-123 (429)
427 TIGR01069 mutS2 MutS2 family p 94.3 0.036 7.9E-07 66.6 3.9 23 201-223 322-344 (771)
428 cd03252 ABCC_Hemolysin The ABC 94.2 0.64 1.4E-05 47.9 12.7 50 275-324 151-201 (237)
429 cd03232 ABC_PDR_domain2 The pl 94.2 0.35 7.5E-06 47.9 10.3 23 202-224 34-56 (192)
430 PRK13543 cytochrome c biogenes 94.2 0.55 1.2E-05 47.4 12.0 23 202-224 38-60 (214)
431 PF07726 AAA_3: ATPase family 94.2 0.027 5.9E-07 50.1 2.1 27 204-232 2-28 (131)
432 COG5635 Predicted NTPase (NACH 94.2 0.061 1.3E-06 66.0 5.8 137 202-343 223-371 (824)
433 PF01583 APS_kinase: Adenylyls 94.2 0.053 1.1E-06 50.8 3.9 36 201-238 2-37 (156)
434 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.1 0.41 8.9E-06 49.3 11.0 58 275-334 152-210 (238)
435 PRK05917 DNA polymerase III su 94.1 1.1 2.4E-05 46.8 13.9 59 279-337 94-154 (290)
436 PRK09544 znuC high-affinity zi 94.1 0.48 1E-05 49.2 11.5 23 202-224 31-53 (251)
437 PF06745 KaiC: KaiC; InterPro 94.1 0.095 2.1E-06 53.5 6.2 86 200-289 18-124 (226)
438 PRK03839 putative kinase; Prov 94.1 0.035 7.6E-07 54.4 2.9 22 203-224 2-23 (180)
439 cd03233 ABC_PDR_domain1 The pl 94.1 0.55 1.2E-05 46.9 11.5 23 202-224 34-56 (202)
440 PRK14269 phosphate ABC transpo 94.1 0.7 1.5E-05 47.9 12.6 23 202-224 29-51 (246)
441 PRK04040 adenylate kinase; Pro 94.1 0.041 8.9E-07 54.0 3.2 23 202-224 3-25 (188)
442 PRK13650 cbiO cobalt transport 94.0 0.44 9.6E-06 50.3 11.1 52 273-324 151-205 (279)
443 PRK14527 adenylate kinase; Pro 94.0 0.11 2.3E-06 51.5 6.0 25 200-224 5-29 (191)
444 PHA00729 NTP-binding motif con 94.0 0.049 1.1E-06 54.2 3.5 25 200-224 16-40 (226)
445 cd02028 UMPK_like Uridine mono 93.9 0.075 1.6E-06 51.8 4.8 22 203-224 1-22 (179)
446 cd03300 ABC_PotA_N PotA is an 93.9 0.4 8.7E-06 49.1 10.4 23 202-224 27-49 (232)
447 PRK11388 DNA-binding transcrip 93.9 0.22 4.7E-06 59.7 9.6 131 174-319 325-466 (638)
448 PRK11247 ssuB aliphatic sulfon 93.9 0.68 1.5E-05 48.2 12.1 23 202-224 39-61 (257)
449 smart00534 MUTSac ATPase domai 93.9 0.51 1.1E-05 46.4 10.6 20 203-222 1-20 (185)
450 PRK00625 shikimate kinase; Pro 93.9 0.039 8.5E-07 53.2 2.6 22 203-224 2-23 (173)
451 cd03240 ABC_Rad50 The catalyti 93.9 0.49 1.1E-05 47.3 10.6 60 273-334 132-195 (204)
452 PRK10820 DNA-binding transcrip 93.9 0.15 3.2E-06 59.1 7.8 132 174-319 204-348 (520)
453 TIGR03498 FliI_clade3 flagella 93.9 0.17 3.6E-06 56.0 7.8 85 202-289 141-239 (418)
454 TIGR02314 ABC_MetN D-methionin 93.9 0.3 6.5E-06 53.0 9.7 53 273-325 151-206 (343)
455 TIGR02788 VirB11 P-type DNA tr 93.9 0.14 3E-06 54.9 7.1 112 202-323 145-256 (308)
456 TIGR01188 drrA daunorubicin re 93.9 0.37 8.1E-06 51.6 10.4 23 202-224 20-42 (302)
457 PHA02774 E1; Provisional 93.9 0.29 6.2E-06 55.4 9.5 50 182-240 420-469 (613)
458 PRK08972 fliI flagellum-specif 93.8 0.2 4.3E-06 55.2 8.2 84 202-289 163-261 (444)
459 PRK08927 fliI flagellum-specif 93.8 0.22 4.8E-06 55.1 8.6 85 201-289 158-257 (442)
460 PRK09519 recA DNA recombinatio 93.8 0.12 2.6E-06 61.2 6.9 84 200-290 59-148 (790)
461 TIGR01360 aden_kin_iso1 adenyl 93.8 0.048 1E-06 53.9 3.2 25 200-224 2-26 (188)
462 COG1066 Sms Predicted ATP-depe 93.8 0.13 2.8E-06 54.9 6.4 96 183-291 79-179 (456)
463 cd01129 PulE-GspE PulE/GspE Th 93.8 0.3 6.5E-06 50.9 9.2 81 202-292 81-161 (264)
464 COG4088 Predicted nucleotide k 93.8 1 2.2E-05 43.5 11.6 23 202-224 2-24 (261)
465 PRK00279 adk adenylate kinase; 93.8 0.12 2.6E-06 52.2 6.2 22 203-224 2-23 (215)
466 COG1131 CcmA ABC-type multidru 93.8 0.57 1.2E-05 49.7 11.4 23 202-224 32-54 (293)
467 PRK13537 nodulation ABC transp 93.8 0.38 8.3E-06 51.5 10.2 23 202-224 34-56 (306)
468 PRK07276 DNA polymerase III su 93.8 1.9 4E-05 45.3 14.9 69 279-348 103-173 (290)
469 COG1936 Predicted nucleotide k 93.8 0.046 1E-06 51.0 2.7 20 203-222 2-21 (180)
470 PRK06793 fliI flagellum-specif 93.8 0.36 7.8E-06 53.4 10.0 120 201-325 156-291 (432)
471 cd01136 ATPase_flagellum-secre 93.7 0.33 7.2E-06 51.7 9.4 84 202-289 70-168 (326)
472 TIGR03411 urea_trans_UrtD urea 93.7 0.53 1.2E-05 48.6 11.0 52 273-324 154-206 (242)
473 PRK05201 hslU ATP-dependent pr 93.7 0.15 3.3E-06 55.5 6.9 51 174-224 15-73 (443)
474 TIGR00968 3a0106s01 sulfate AB 93.7 0.48 1E-05 48.8 10.5 23 202-224 27-49 (237)
475 COG2274 SunT ABC-type bacterio 93.7 0.63 1.4E-05 55.4 12.6 22 202-223 500-521 (709)
476 TIGR00150 HI0065_YjeE ATPase, 93.7 0.089 1.9E-06 47.8 4.4 41 181-225 6-46 (133)
477 cd03287 ABC_MSH3_euk MutS3 hom 93.7 0.74 1.6E-05 46.4 11.4 118 201-326 31-160 (222)
478 KOG1947 Leucine rich repeat pr 93.6 0.0064 1.4E-07 70.6 -4.0 171 739-920 184-368 (482)
479 TIGR03575 selen_PSTK_euk L-ser 93.6 0.77 1.7E-05 49.3 11.9 21 204-224 2-22 (340)
480 PRK15453 phosphoribulokinase; 93.6 0.27 5.8E-06 50.7 8.0 77 200-278 4-88 (290)
481 cd03248 ABCC_TAP TAP, the Tran 93.6 1 2.2E-05 46.0 12.5 59 274-334 162-221 (226)
482 PF13479 AAA_24: AAA domain 93.5 0.18 4E-06 50.8 6.8 20 202-221 4-23 (213)
483 PRK09435 membrane ATPase/prote 93.5 0.25 5.4E-06 52.9 8.1 26 199-224 54-79 (332)
484 PRK14528 adenylate kinase; Pro 93.5 0.16 3.5E-06 49.9 6.2 23 202-224 2-24 (186)
485 cd02023 UMPK Uridine monophosp 93.5 0.045 9.8E-07 54.6 2.4 22 203-224 1-22 (198)
486 cd02024 NRK1 Nicotinamide ribo 93.5 0.047 1E-06 53.2 2.3 22 203-224 1-22 (187)
487 cd01135 V_A-ATPase_B V/A-type 93.4 0.34 7.3E-06 49.9 8.5 88 202-289 70-175 (276)
488 cd03250 ABCC_MRP_domain1 Domai 93.4 1.8 4E-05 43.2 14.0 23 202-224 32-54 (204)
489 TIGR02322 phosphon_PhnN phosph 93.4 0.057 1.2E-06 52.9 2.9 23 202-224 2-24 (179)
490 KOG1947 Leucine rich repeat pr 93.4 0.01 2.2E-07 68.9 -2.9 173 719-914 192-373 (482)
491 PRK13647 cbiO cobalt transport 93.4 0.75 1.6E-05 48.5 11.5 23 202-224 32-54 (274)
492 COG4240 Predicted kinase [Gene 93.4 0.24 5.3E-06 48.2 6.8 83 198-281 47-134 (300)
493 cd03289 ABCC_CFTR2 The CFTR su 93.4 1.1 2.5E-05 47.0 12.7 23 202-224 31-53 (275)
494 cd01132 F1_ATPase_alpha F1 ATP 93.3 0.16 3.5E-06 52.2 6.1 84 202-289 70-170 (274)
495 KOG0743 AAA+-type ATPase [Post 93.3 1.7 3.7E-05 47.4 13.8 23 202-224 236-258 (457)
496 TIGR01359 UMP_CMP_kin_fam UMP- 93.3 0.049 1.1E-06 53.5 2.3 22 203-224 1-22 (183)
497 PF03205 MobB: Molybdopterin g 93.3 0.098 2.1E-06 48.5 4.1 39 202-241 1-39 (140)
498 PRK15177 Vi polysaccharide exp 93.3 0.97 2.1E-05 45.5 11.7 23 202-224 14-36 (213)
499 COG2019 AdkA Archaeal adenylat 93.3 0.075 1.6E-06 49.1 3.2 24 201-224 4-27 (189)
500 PRK09280 F0F1 ATP synthase sub 93.3 0.32 7E-06 54.1 8.7 88 201-289 144-247 (463)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-85 Score=771.41 Aligned_cols=831 Identities=27% Similarity=0.438 Sum_probs=595.4
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhHhhhhhHHHH
Q 043039 3 DAIVSAVLKQLNSTAVEEAKEQVRLVTGVEKEVKRLQDNLEAIQAVLADAERRQVKEEHVRLWLDKLKQASYDIDDVLDE 82 (949)
Q Consensus 3 ~~~v~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~l~~~~~~~ed~ld~ 82 (949)
++.++..++++.. .+.+++..+.+.++.+..|++.+..++.++++|+.++.....+..|.+.+++.+|++||+++.
T Consensus 2 ~~~~s~~~~~~~~----~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~ 77 (889)
T KOG4658|consen 2 GACVSFGVEKLDQ----LLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWL 77 (889)
T ss_pred CeEEEEehhhHHH----HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666665 788888889999999999999999999999999999988889999999999999999999999
Q ss_pred HHHhhhcccccCCccchhhhhhhhcccccCCCCcccCcchhhhHHHHHHHHHHHHHHHHHHHhhcccCCccc----ccCC
Q 043039 83 WNTARGKLQNEGVDADNALSFLQKLCSSFFPAASCFGFEQLFLRRDIAKKIKEMNETLDNISRQKDTFNLSV----TRSK 158 (949)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i~~~~~~~~~~~----~~~~ 158 (949)
|.....+.+..+.... .....++. |++ .++++.+..+..+.+++..+.+....+.... ....
T Consensus 78 ~~v~~~~~~~~~~l~~-~~~~~~~~---------c~~----~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~ 143 (889)
T KOG4658|consen 78 FLVEEIERKANDLLST-RSVERQRL---------CLC----GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGES 143 (889)
T ss_pred HHHHHHHHHHhHHhhh-hHHHHHHH---------hhh----hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceeccccc
Confidence 9877654432211000 00001111 111 2333444444444444444444333332211 0000
Q ss_pred CccCCCcccccccccCccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcc-cccccceEEEE
Q 043039 159 EDKSERTQSTALINVSEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDAD-VSNNFNVMIWV 237 (949)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv 237 (949)
.......++.+..+... ||.++.++++.+.|..++ ..+++|+||||+||||||++++|+.. ++.+|+.++||
T Consensus 144 ~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV 216 (889)
T KOG4658|consen 144 LDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWV 216 (889)
T ss_pred ccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEE
Confidence 11112234444444445 999999999999998754 28999999999999999999999987 89999999999
Q ss_pred EeCCCCCHHHHHHHHHHhcCCCCCCCcc--hHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEE
Q 043039 238 CVSDPFDVFRVWKAIIENLDGYTPDLGE--LNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILV 315 (949)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~--~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv 315 (949)
.||+.++...++.+|++.++.......+ .+.+...+.+.|+++||+|||||||+. .+|+.+..++|...+||+|++
T Consensus 217 ~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~Kvvl 294 (889)
T KOG4658|consen 217 VVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVL 294 (889)
T ss_pred EEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEE
Confidence 9999999999999999998875443322 367888999999999999999999998 569999999999999999999
Q ss_pred EccchhhHhh-hcCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHHhhhccCCCHH
Q 043039 316 TTRKETVARM-IGSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIGSLLRFKKARE 394 (949)
Q Consensus 316 Ttr~~~v~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~ 394 (949)
|||++.|+.. +++...++++.|+++|||.+|++.+|.... ...+.+.++|++|+++|+|+|||+.++|+.|+.+.+..
T Consensus 295 TTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~ 373 (889)
T KOG4658|consen 295 TTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQ 373 (889)
T ss_pred EeccHhhhhccccCCccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHH
Confidence 9999999998 788889999999999999999999986533 33455999999999999999999999999999999999
Q ss_pred HHHHHHhhhccc----hhhhccchHHHHHhccCCCChhHHHHHhhhcccCCCcccChhhHHHHHHHcCccccCC-Chhhh
Q 043039 395 EWQSILDSEIWQ----VEEFEKNLLPALLLSYNDLPNEIKRCFSYCAVLPKECYVDRDELIKLWMAQGYIDQKG-NKEME 469 (949)
Q Consensus 395 ~w~~~l~~~~~~----~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~a~fp~~~~i~~~~li~~w~aeg~i~~~~-~~~~~ 469 (949)
+|+.+.+...+. .++..+.+++++.+||+.||++.|.||+|||+||+||.|+++.|+.+|+||||+.... +..+
T Consensus 374 eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~- 452 (889)
T KOG4658|consen 374 EWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETA- 452 (889)
T ss_pred HHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccch-
Confidence 999998865444 2333578999999999999999999999999999999999999999999999998844 4455
Q ss_pred hHHHHHHHHHHHHHHhccCcccccccCCCCEeEEEEchhHHHHHHHhhh-----hhheeeccC-CCCCCCcccccccCCc
Q 043039 470 MEMEMVGERYFDLLAKRSFFQEFEKHEEGNVKRYKMHDIVHGFAQLLTK-----VECAAMEVG-SVGEPPLLRNICYEKL 543 (949)
Q Consensus 470 ~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~hdlv~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~ 543 (949)
++.|..|+++|+++++++..... ++..+|+|||+||++|.+++. .+..+...+ +..+.| ....+..+
T Consensus 453 ---~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~--~~~~~~~~ 525 (889)
T KOG4658|consen 453 ---EDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIP--QVKSWNSV 525 (889)
T ss_pred ---hcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccc--cccchhhe
Confidence 89999999999999999986654 566889999999999999998 555444332 333333 34455789
Q ss_pred eEEEEEeccCCCCcccccCCCCceEEEecCCC--CCCcc-hhhccCCceeEEEeCCccccccccccccccCCCCCCeeee
Q 043039 544 RHSILVLHYNASFPVSIFNAKKLRSLLIQGYS--LQHMP-SFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKL 620 (949)
Q Consensus 544 r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~--l~~l~-~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L 620 (949)
|+++++++....++.. ..+++|++|.+.+|. +..++ .+|..++.|++|||++|.. +..+|++|++|.+||||++
T Consensus 526 rr~s~~~~~~~~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~--l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 526 RRMSLMNNKIEHIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS--LSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred eEEEEeccchhhccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc--cCcCChHHhhhhhhhcccc
Confidence 9999999887765444 456789999999996 55554 4688999999999998775 8899999999999999999
Q ss_pred cccCCcccchhhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccccCCcCCCCCCCCcccCccceecCCCcc
Q 043039 621 FFVGIEELPETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEFVAVSGGGKY 700 (949)
Q Consensus 621 ~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~ 700 (949)
+++.++.+|.++.+|++|++|++..+..+..+|.....|++||+|.+.+.....-...++.+.+|++|..+. ......
T Consensus 603 ~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls-~~~~s~- 680 (889)
T KOG4658|consen 603 SDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLS-ITISSV- 680 (889)
T ss_pred cCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhe-eecchh-
Confidence 999999999999999999999999988777777767779999999966544222112344445555554332 111110
Q ss_pred CCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCc
Q 043039 701 GSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLES 780 (949)
Q Consensus 701 ~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 780 (949)
.....+..+..|..+...+.+.++ ........+..+.+|+.|.+..+...+............ ..++++..
T Consensus 681 -~~~e~l~~~~~L~~~~~~l~~~~~-----~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~---~~f~~l~~ 751 (889)
T KOG4658|consen 681 -LLLEDLLGMTRLRSLLQSLSIEGC-----SKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVL---LCFPNLSK 751 (889)
T ss_pred -HhHhhhhhhHHHHHHhHhhhhccc-----ccceeecccccccCcceEEEEcCCCchhhcccccccchh---hhHHHHHH
Confidence 000111111122111111111110 011122345556677777776665542200000000000 01334555
Q ss_pred eEEeccccCCCCCchhhcccCCcEEEEeccCCCCC-CCCCCCCCCcceeeecCCCCcEEeCCcccCCCCCCCCcccee-e
Q 043039 781 LQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEI-MPPLGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKF-T 858 (949)
Q Consensus 781 L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~-~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L-~ 858 (949)
+.+.+|.... .+.|....++|+.|.+..|...+. +|....+..+..+.+ .|+++..+ .
T Consensus 752 ~~~~~~~~~r-~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~-------------------~f~~~~~l~~ 811 (889)
T KOG4658|consen 752 VSILNCHMLR-DLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELIL-------------------PFNKLEGLRM 811 (889)
T ss_pred HHhhcccccc-ccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEe-------------------ccccccccee
Confidence 5555555444 555655666677777766665443 333444444443222 45555556 4
Q ss_pred eccccccccccccccccccccccceeccccCccCcCCCCCCCCCCCcceEEEccC
Q 043039 859 LWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKMLPDQVLRSTTLKKLEINDC 913 (949)
Q Consensus 859 l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 913 (949)
+.+++++..+...|- .++.|+.+.+..||+++++|. +..+.+.+|
T Consensus 812 ~~~l~~l~~i~~~~l---~~~~l~~~~ve~~p~l~~~P~-------~~~~~i~~~ 856 (889)
T KOG4658|consen 812 LCSLGGLPQLYWLPL---SFLKLEELIVEECPKLGKLPL-------LSTLTIVGC 856 (889)
T ss_pred eecCCCCceeEeccc---CccchhheehhcCcccccCcc-------ccccceecc
Confidence 555565555544433 355588888888888777764 444555555
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5.3e-61 Score=597.89 Aligned_cols=669 Identities=22% Similarity=0.287 Sum_probs=479.7
Q ss_pred cccCccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEe---CCC-----
Q 043039 171 INVSEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCV---SDP----- 242 (949)
Q Consensus 171 ~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~----- 242 (949)
.+.+.+|||+++++++..+|... ..++++|+||||||+||||||+++|+. +..+|+..+|+.. +..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~~--l~~~F~g~vfv~~~~v~~~~~~~~ 254 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFSR--LSRQFQSSVFIDRAFISKSMEIYS 254 (1153)
T ss_pred cccccccchHHHHHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHHH--HhhcCCeEEEeeccccccchhhcc
Confidence 34567999999999999998643 246899999999999999999999985 6778988887742 110
Q ss_pred ------CC-HHHHHHHHHHhcCCCC-CCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEE
Q 043039 243 ------FD-VFRVWKAIIENLDGYT-PDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKIL 314 (949)
Q Consensus 243 ------~~-~~~~~~~i~~~l~~~~-~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 314 (949)
++ ...++.+++.++.... ..... ...+++.++++|+||||||||+. ..|+.+.......++||+||
T Consensus 255 ~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrII 328 (1153)
T PLN03210 255 SANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRII 328 (1153)
T ss_pred cccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEE
Confidence 11 1234444554443221 11111 14567788999999999999875 66888776655567899999
Q ss_pred EEccchhhHhhhcCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHHhhhccCCCHH
Q 043039 315 VTTRKETVARMIGSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIGSLLRFKKARE 394 (949)
Q Consensus 315 vTtr~~~v~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~ 394 (949)
||||++.++..++...+|+++.+++++||++|+++||+... .+..+.+++++|+++|+|+|||++++|++|+. ++..
T Consensus 329 iTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~ 405 (1153)
T PLN03210 329 VITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKE 405 (1153)
T ss_pred EEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHH
Confidence 99999999987777889999999999999999999997543 34578899999999999999999999999985 4789
Q ss_pred HHHHHHhhhccchhhhccchHHHHHhccCCCCh-hHHHHHhhhcccCCCcccChhhHHHHHHHcCccccCCChhhhhHHH
Q 043039 395 EWQSILDSEIWQVEEFEKNLLPALLLSYNDLPN-EIKRCFSYCAVLPKECYVDRDELIKLWMAQGYIDQKGNKEMEMEME 473 (949)
Q Consensus 395 ~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~cf~~~a~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~ 473 (949)
+|..++.+... ..+.+|.++|++||+.|++ ..|.||+++|+|+++..++ .+..|.+.+....
T Consensus 406 ~W~~~l~~L~~---~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------- 468 (1153)
T PLN03210 406 DWMDMLPRLRN---GLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------- 468 (1153)
T ss_pred HHHHHHHHHHh---CccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------
Confidence 99999987443 2345799999999999987 5999999999999886553 4677777654321
Q ss_pred HHHHHHHHHHHhccCcccccccCCCCEeEEEEchhHHHHHHHhhhhhhe-------eecc---------C-C--------
Q 043039 474 MVGERYFDLLAKRSFFQEFEKHEEGNVKRYKMHDIVHGFAQLLTKVECA-------AMEV---------G-S-------- 528 (949)
Q Consensus 474 ~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~hdlv~~~~~~~~~~~~~-------~~~~---------~-~-------- 528 (949)
..-++.|++++|++... .++.|||+++++++.+.+.+.. .... + +
T Consensus 469 ---~~~l~~L~~ksLi~~~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~ 538 (1153)
T PLN03210 469 ---NIGLKNLVDKSLIHVRE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGIT 538 (1153)
T ss_pred ---hhChHHHHhcCCEEEcC-------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEE
Confidence 11278899999997632 2489999999999988765421 0000 0 0
Q ss_pred -----CCC--CCcccccccCCceEEEEEeccC-------CCCcccccCC-CCceEEEecCCCCCCcchhhccCCceeEEE
Q 043039 529 -----VGE--PPLLRNICYEKLRHSILVLHYN-------ASFPVSIFNA-KKLRSLLIQGYSLQHMPSFFDQLTCLRALR 593 (949)
Q Consensus 529 -----~~~--~~~~~~~~~~~~r~l~l~~~~~-------~~l~~~~~~~-~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~ 593 (949)
... +....+....+++.+.+..+.. ..+|..+..+ .+||.|.+.++++..+|..| .+.+|+.|+
T Consensus 539 l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~ 617 (1153)
T PLN03210 539 LDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQ 617 (1153)
T ss_pred eccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEE
Confidence 000 0000011122333333332211 1234444444 45888888888888888766 567889999
Q ss_pred eCCccccccccccccccCCCCCCeeeecccC-CcccchhhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCC-Ccc
Q 043039 594 IGKYGDDAIERIPNGIEKLIHLRYLKLFFVG-IEELPETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFD-EDD 671 (949)
Q Consensus 594 L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~-i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~-~~~ 671 (949)
+.++. +..+|.++..+++|++|+|+++. +..+| .++.+++|++|+|++|..+..+|..++++++|+.|+++ |+.
T Consensus 618 L~~s~---l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~ 693 (1153)
T PLN03210 618 MQGSK---LEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCEN 693 (1153)
T ss_pred CcCcc---ccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCC
Confidence 98887 78888888889999999998765 66666 47888999999999988888899999999999999965 467
Q ss_pred cccCCcCCCCCCCCcccCccceecCCCccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEE
Q 043039 672 LDYMPKGMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELE 751 (949)
Q Consensus 672 l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~ 751 (949)
+..+|.++ ++++|+.|++..+..... .+ ... .+|. .+.+.+.. +..+. ....+++|..|.+.
T Consensus 694 L~~Lp~~i-~l~sL~~L~Lsgc~~L~~-~p---~~~------~nL~-~L~L~~n~-i~~lP-----~~~~l~~L~~L~l~ 755 (1153)
T PLN03210 694 LEILPTGI-NLKSLYRLNLSGCSRLKS-FP---DIS------TNIS-WLDLDETA-IEEFP-----SNLRLENLDELILC 755 (1153)
T ss_pred cCccCCcC-CCCCCCEEeCCCCCCccc-cc---ccc------CCcC-eeecCCCc-ccccc-----cccccccccccccc
Confidence 88888776 788888887654211100 00 001 1111 22222211 11111 11245677777776
Q ss_pred ecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCCCCCCCCCCCCcceeeec
Q 043039 752 FDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMPPLGKLQSLEVLDIW 831 (949)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~ 831 (949)
.+.......... ...+.....+++|+.|+|++|.....+|.+++++++|+.|+|++|...+.+|....+++|+.|+|+
T Consensus 756 ~~~~~~l~~~~~--~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls 833 (1153)
T PLN03210 756 EMKSEKLWERVQ--PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLS 833 (1153)
T ss_pred ccchhhcccccc--ccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECC
Confidence 543211100000 000111223578999999999877779999999999999999999888888876689999999999
Q ss_pred CCCCcEEeCCcccCCCCCCCCccceeeeccccccccccccccccccccccceeccccCccCcCCCCCCCCCCCcceEEEc
Q 043039 832 EMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKMLPDQVLRSTTLKKLEIN 911 (949)
Q Consensus 832 ~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 911 (949)
+|..+..++. ..++|+.|.+.+. .+...|..+..+++|+.|+|++|++++.+|..+..+++|+.++++
T Consensus 834 ~c~~L~~~p~--------~~~nL~~L~Ls~n----~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~ 901 (1153)
T PLN03210 834 GCSRLRTFPD--------ISTNISDLNLSRT----GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFS 901 (1153)
T ss_pred CCCccccccc--------cccccCEeECCCC----CCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecC
Confidence 9987654432 3467888887652 234456667789999999999999999999988899999999999
Q ss_pred cCCChhH
Q 043039 912 DCPILEK 918 (949)
Q Consensus 912 ~c~~l~~ 918 (949)
+|++|++
T Consensus 902 ~C~~L~~ 908 (1153)
T PLN03210 902 DCGALTE 908 (1153)
T ss_pred CCccccc
Confidence 9998864
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=9.8e-43 Score=373.10 Aligned_cols=279 Identities=39% Similarity=0.665 Sum_probs=226.5
Q ss_pred chhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCC
Q 043039 179 RNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDG 258 (949)
Q Consensus 179 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 258 (949)
||.++++|.++|.... .+.++|+|+||||+||||||.+++++...+.+|+.++|+.++...+...++..|+.+++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998743 478999999999999999999999987788999999999999999999999999999987
Q ss_pred CCC---CCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccchhhHhhhcC-cceEeC
Q 043039 259 YTP---DLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKETVARMIGS-TCVISI 334 (949)
Q Consensus 259 ~~~---~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~-~~~~~l 334 (949)
... ...+.+.....+.+.|+++++||||||||+. ..|+.+...++....|++||||||+..++..+.. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 743 3467778999999999999999999999876 5788888888888889999999999999877665 679999
Q ss_pred CCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHHhhhccCCCHHHHHHHHhhhccchhh---hc
Q 043039 335 EELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIGSLLRFKKAREEWQSILDSEIWQVEE---FE 411 (949)
Q Consensus 335 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~l~~~~~~~~~---~~ 411 (949)
++|+.++|++||.+.++... ....+...+.+++|+++|+|+|||++++|++|+.+.+..+|..+++.......+ ..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999997655 223445577899999999999999999999997666778899988764444322 34
Q ss_pred cchHHHHHhccCCCChhHHHHHhhhcccCCCcccChhhHHHHHHHcCccccCC
Q 043039 412 KNLLPALLLSYNDLPNEIKRCFSYCAVLPKECYVDRDELIKLWMAQGYIDQKG 464 (949)
Q Consensus 412 ~~i~~~l~~sy~~L~~~~k~cf~~~a~fp~~~~i~~~~li~~w~aeg~i~~~~ 464 (949)
..++.++.+||+.||++.|.||+|||+||+++.|+++.++++|+++|||...+
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~~ 286 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSKH 286 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC---
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcccC
Confidence 67999999999999999999999999999999999999999999999998653
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=5.1e-24 Score=267.58 Aligned_cols=349 Identities=21% Similarity=0.248 Sum_probs=194.7
Q ss_pred cCCceEEEEEeccCC-CCccccc-CCCCceEEEecCCCCCC-cchhhccCCceeEEEeCCccccccccccccccCCCCCC
Q 043039 540 YEKLRHSILVLHYNA-SFPVSIF-NAKKLRSLLIQGYSLQH-MPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLR 616 (949)
Q Consensus 540 ~~~~r~l~l~~~~~~-~l~~~~~-~~~~Lr~L~l~~~~l~~-l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~ 616 (949)
.+.++.+.+.++... .+|..+. .+++|++|++++|.+.. +|. ..+++|++|+|++|.. ...+|..++++++|+
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~--~~~~p~~~~~l~~L~ 167 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNML--SGEIPNDIGSFSSLK 167 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcc--cccCChHHhcCCCCC
Confidence 355666666655543 3454433 66667777766666542 332 3456666666666652 234566666677777
Q ss_pred eeeecccCCc-ccchhhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccc-cCCcCCCCCCCCcccCcccee
Q 043039 617 YLKLFFVGIE-ELPETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLD-YMPKGMGSLTGLRTLSEFVAV 694 (949)
Q Consensus 617 ~L~L~~~~i~-~lp~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~-~~p~~i~~l~~L~~L~~~~~~ 694 (949)
+|++++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|.+. .+|..++++++|++|++..+.
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence 7777766654 55666667777777777766655566666677777777776666655 456666666777766644321
Q ss_pred cCCCccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCC
Q 043039 695 SGGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRP 774 (949)
Q Consensus 695 ~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~ 774 (949)
.. ......+..+.+|. .+.+....-.. .....+..+++|+.|++++|...+. ++..+..
T Consensus 248 l~----~~~p~~l~~l~~L~----~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~---------~p~~~~~ 306 (968)
T PLN00113 248 LT----GPIPSSLGNLKNLQ----YLFLYQNKLSG----PIPPSIFSLQKLISLDLSDNSLSGE---------IPELVIQ 306 (968)
T ss_pred ec----cccChhHhCCCCCC----EEECcCCeeec----cCchhHhhccCcCEEECcCCeeccC---------CChhHcC
Confidence 11 11112222222222 22222111000 0111234455666666666554432 3444555
Q ss_pred CCCcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCCCCCC-CCCCCCcceeeecCCCCcEEeCCcc----------
Q 043039 775 HPNLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMPP-LGKLQSLEVLDIWEMHGIKRVGDEV---------- 843 (949)
Q Consensus 775 ~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~~~~---------- 843 (949)
+++|+.|++++|.+.+.+|.++..+++|+.|++++|.+...+|. ++.+++|+.|++++|.-...++..+
T Consensus 307 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ 386 (968)
T PLN00113 307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI 386 (968)
T ss_pred CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEE
Confidence 56666666666665555555566666666666666655544443 5555666666665544211111111
Q ss_pred ------cCCC---CCCCCccceeeeccccccccccccccccccccccceeccccCccCcCCCCCCCCCCCcceEEEccCC
Q 043039 844 ------LGIE---IIAFPRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKMLPDQVLRSTTLKKLEINDCP 914 (949)
Q Consensus 844 ------~~~~---~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 914 (949)
.+.. ...+++|+.|.+.++. .....|..+..+++|+.|++++|.....+|..+..+++|+.|++++|.
T Consensus 387 l~~n~l~~~~p~~~~~~~~L~~L~L~~n~---l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 463 (968)
T PLN00113 387 LFSNSLEGEIPKSLGACRSLRRVRLQDNS---FSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463 (968)
T ss_pred CcCCEecccCCHHHhCCCCCCEEECcCCE---eeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCce
Confidence 0000 1145666777665532 222345566778888888888887666777767778889999998886
Q ss_pred Ch
Q 043039 915 IL 916 (949)
Q Consensus 915 ~l 916 (949)
..
T Consensus 464 ~~ 465 (968)
T PLN00113 464 FF 465 (968)
T ss_pred ee
Confidence 43
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=4.3e-24 Score=268.24 Aligned_cols=147 Identities=24% Similarity=0.277 Sum_probs=68.0
Q ss_pred CCceEEEEEeccCC-CCcccccCCCCceEEEecCCCCC-CcchhhccCCceeEEEeCCccccccccccccccCCCCCCee
Q 043039 541 EKLRHSILVLHYNA-SFPVSIFNAKKLRSLLIQGYSLQ-HMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYL 618 (949)
Q Consensus 541 ~~~r~l~l~~~~~~-~l~~~~~~~~~Lr~L~l~~~~l~-~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L 618 (949)
.+++.+.+.++... .+|..+.++++|++|++++|.+. .+|..+.++++|+.|+|++|.. ...+|..++++++|++|
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l--~~~~p~~l~~l~~L~~L 241 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL--SGEIPYEIGGLTSLNHL 241 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc--CCcCChhHhcCCCCCEE
Confidence 34444444444322 23444444555555555554443 2344444455555555554442 22344444555555555
Q ss_pred eecccCCc-ccchhhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccc-cCCcCCCCCCCCcccC
Q 043039 619 KLFFVGIE-ELPETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLD-YMPKGMGSLTGLRTLS 689 (949)
Q Consensus 619 ~L~~~~i~-~lp~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~-~~p~~i~~l~~L~~L~ 689 (949)
++++|.+. .+|..++++++|++|++++|.....+|..+.++++|++|++++|.+. .+|..+.++++|+.|+
T Consensus 242 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 314 (968)
T PLN00113 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH 314 (968)
T ss_pred ECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEE
Confidence 55555443 34444555555555555544433344444445555555554444443 2334444444444444
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=1.2e-26 Score=244.92 Aligned_cols=318 Identities=21% Similarity=0.271 Sum_probs=151.6
Q ss_pred cCCceEEEEEeccCCCCcccccCCCCceEEEecCCCCC--CcchhhccCCceeEEEeCCccccccccccccccCCCCCCe
Q 043039 540 YEKLRHSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQ--HMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRY 617 (949)
Q Consensus 540 ~~~~r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~--~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~ 617 (949)
.+++.|+++.++....+...+..++.||++.+..|+++ .+|..+-.+..|.+|||+.|. +.+.|..+...+++-.
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq---L~EvP~~LE~AKn~iV 130 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ---LREVPTNLEYAKNSIV 130 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhh---hhhcchhhhhhcCcEE
Confidence 34555555555555554555555555555555555544 345444555555555555555 5555555555555555
Q ss_pred eeecccCCcccchhhc-CCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccccCC-cCCCCCCCCcccCccceec
Q 043039 618 LKLFFVGIEELPETFC-ELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMP-KGMGSLTGLRTLSEFVAVS 695 (949)
Q Consensus 618 L~L~~~~i~~lp~~l~-~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p-~~i~~l~~L~~L~~~~~~~ 695 (949)
|+||+|+|.++|.++. +|..|-+|||++|. ++.+|+.+..|.+|++|.+++|.+..+. ..+..|++|++|.+...
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~T-- 207 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNT-- 207 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccc--
Confidence 5555555555554432 55555555555554 5555555555555555555555444321 12233344444432220
Q ss_pred CCCccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCC
Q 043039 696 GGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPH 775 (949)
Q Consensus 696 ~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~ 775 (949)
........ ..+..+.+|..++++.|.+.. +|+.+-.+
T Consensus 208 -qRTl~N~P--------------------------------tsld~l~NL~dvDlS~N~Lp~----------vPecly~l 244 (1255)
T KOG0444|consen 208 -QRTLDNIP--------------------------------TSLDDLHNLRDVDLSENNLPI----------VPECLYKL 244 (1255)
T ss_pred -cchhhcCC--------------------------------CchhhhhhhhhccccccCCCc----------chHHHhhh
Confidence 00000001 123334445555555544332 34444444
Q ss_pred CCcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCCCCCCCCCCCCcceeeecCCCCcEEeCCcccCCCCCCCCccc
Q 043039 776 PNLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMPPLGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLK 855 (949)
Q Consensus 776 ~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~ 855 (949)
++|+.|+|++|.++. +......-.+|++|+|+.|++...+..+..|+.|+.|.+.++. +. +-+ .+.+..+|.
T Consensus 245 ~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~Nk-L~-----FeG-iPSGIGKL~ 316 (1255)
T KOG0444|consen 245 RNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNK-LT-----FEG-IPSGIGKLI 316 (1255)
T ss_pred hhhheeccCcCceee-eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCc-cc-----ccC-Cccchhhhh
Confidence 555555555555544 3333333445555555555443333334555555555553322 11 000 011222333
Q ss_pred eeeeccccccccccccccccccccccceeccccCccCcCCCCCCCCCCCcceEEEccCCCh
Q 043039 856 KFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKMLPDQVLRSTTLKKLEINDCPIL 916 (949)
Q Consensus 856 ~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 916 (949)
.|......+ +.+...|+++..|+.|+.|.|+.| .|..+|+.|.-++.|+.|++.+||+|
T Consensus 317 ~Levf~aan-N~LElVPEglcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 317 QLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhHHHHhhc-cccccCchhhhhhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCc
Confidence 333322222 223444556666666666666444 44456666666666666666666654
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=8.9e-25 Score=231.00 Aligned_cols=294 Identities=26% Similarity=0.320 Sum_probs=225.8
Q ss_pred CceEEEEEeccC--CCCcccccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccc-cCCCCCCee
Q 043039 542 KLRHSILVLHYN--ASFPVSIFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGI-EKLIHLRYL 618 (949)
Q Consensus 542 ~~r~l~l~~~~~--~~l~~~~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i-~~l~~L~~L 618 (949)
.+|.+.+..+.. ..+|..+..+..|.+|+|+.|.+...|..+..-+++-+|+|++|. |+.+|..+ -+|..|-+|
T Consensus 79 ~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~---IetIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN---IETIPNSLFINLTDLLFL 155 (1255)
T ss_pred hhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc---cccCCchHHHhhHhHhhh
Confidence 445554444432 456999999999999999999999999999999999999999999 99999874 489999999
Q ss_pred eecccCCcccchhhcCCCCCcEEeecCCCCCCcc-ccccccCCCCCeeeCCCccc--ccCCcCCCCCCCCcccCccceec
Q 043039 619 KLFFVGIEELPETFCELFNLQNLDLRRCSKFKRL-PQNIGKLVNLRHLIFDEDDL--DYMPKGMGSLTGLRTLSEFVAVS 695 (949)
Q Consensus 619 ~L~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~l--~~~p~~i~~l~~L~~L~~~~~~~ 695 (949)
|||+|.+..+|+.+..|.+||+|+|++|+ +..+ -..+-.+++|++|.+++++- ..+|.++..|.+|..++++.|
T Consensus 156 DLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-- 232 (1255)
T KOG0444|consen 156 DLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-- 232 (1255)
T ss_pred ccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc--
Confidence 99999999999999999999999999998 3322 12233466777887777654 478999999999999885541
Q ss_pred CCCccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCC
Q 043039 696 GGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPH 775 (949)
Q Consensus 696 ~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~ 775 (949)
. |+ .+. ..+..+.+|+.|+|+.|.+... --.....
T Consensus 233 --~--------------Lp------------~vP-------ecly~l~~LrrLNLS~N~iteL----------~~~~~~W 267 (1255)
T KOG0444|consen 233 --N--------------LP------------IVP-------ECLYKLRNLRRLNLSGNKITEL----------NMTEGEW 267 (1255)
T ss_pred --C--------------CC------------cch-------HHHhhhhhhheeccCcCceeee----------eccHHHH
Confidence 1 11 111 1245667888999998877642 1112234
Q ss_pred CCcCceEEeccccCCCCCchhhcccCCcEEEEeccCCC--CCCCCCCCCCCcceeeecCCCCcEEeCCcccCCCCCCCCc
Q 043039 776 PNLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKC--EIMPPLGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPR 853 (949)
Q Consensus 776 ~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~--~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~ 853 (949)
.+|++|+++.|+++. +|..++.++.|+.|.+.+|.+. +++..+|.|.+|+++...++. ++-.+. +...+++
T Consensus 268 ~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPE-----glcRC~k 340 (1255)
T KOG0444|consen 268 ENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPE-----GLCRCVK 340 (1255)
T ss_pred hhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCch-----hhhhhHH
Confidence 689999999999998 9999999999999999999753 344459999999999997754 333333 3337889
Q ss_pred cceeeeccccccccccccccccccccccceeccccCccCcCCCC
Q 043039 854 LKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKMLPD 897 (949)
Q Consensus 854 L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 897 (949)
|+.|.+.. +. +...|+.+--+|.|+.|+++.||+|..-|.
T Consensus 341 L~kL~L~~---Nr-LiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 341 LQKLKLDH---NR-LITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred HHHhcccc---cc-eeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 99998854 22 334567777899999999999999987664
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=2.7e-23 Score=218.83 Aligned_cols=267 Identities=19% Similarity=0.210 Sum_probs=152.3
Q ss_pred CCceEEEEEeccCCCC-cccccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCcccccccccc-ccccCCCCCCee
Q 043039 541 EKLRHSILVLHYNASF-PVSIFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIP-NGIEKLIHLRYL 618 (949)
Q Consensus 541 ~~~r~l~l~~~~~~~l-~~~~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp-~~i~~l~~L~~L 618 (949)
...+.+.+.++.+..+ +..|.++++|+.+.+.+|.++.+|.+.....+|+.|+|.+|. |..+. +++..++.||.|
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~---I~sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL---ISSVTSEELSALPALRSL 154 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccc---cccccHHHHHhHhhhhhh
Confidence 5667777777776655 455678888888888888888888855566678888888877 44442 357777788888
Q ss_pred eecccCCcccc-hhhcCCCCCcEEeecCCCCCCccc-cccccCCCCCeeeCCCcccccCCc-CCCCCCCCcccCccceec
Q 043039 619 KLFFVGIEELP-ETFCELFNLQNLDLRRCSKFKRLP-QNIGKLVNLRHLIFDEDDLDYMPK-GMGSLTGLRTLSEFVAVS 695 (949)
Q Consensus 619 ~L~~~~i~~lp-~~l~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~~p~-~i~~l~~L~~L~~~~~~~ 695 (949)
||+.|.|+++| +++..-.++++|+|++|. +..+- ..+..+.+|-.|.++.|+++.+|. .+.+|+.|+.|++..|
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN-- 231 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN-- 231 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc--
Confidence 88888888776 445555778888888877 44443 356667777777788888887774 4566777777775442
Q ss_pred CCCccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCC
Q 043039 696 GGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPH 775 (949)
Q Consensus 696 ~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~ 775 (949)
..-....-.+++|..|.++. +.-.+...+.+ ..+..+.+++.|+|..|.+... --.++-.+
T Consensus 232 --~irive~ltFqgL~Sl~nlk--lqrN~I~kL~D------G~Fy~l~kme~l~L~~N~l~~v---------n~g~lfgL 292 (873)
T KOG4194|consen 232 --RIRIVEGLTFQGLPSLQNLK--LQRNDISKLDD------GAFYGLEKMEHLNLETNRLQAV---------NEGWLFGL 292 (873)
T ss_pred --ceeeehhhhhcCchhhhhhh--hhhcCcccccC------cceeeecccceeecccchhhhh---------hccccccc
Confidence 11111122333333333221 10011111111 1234445555555555544321 12233444
Q ss_pred CCcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCCCCCC-CCCCCCcceeeecC
Q 043039 776 PNLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMPP-LGKLQSLEVLDIWE 832 (949)
Q Consensus 776 ~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~ 832 (949)
+.|+.|+|++|.+....++.+..+++|+.|+|++|.+....+. +..|..|+.|.|+.
T Consensus 293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~ 350 (873)
T KOG4194|consen 293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSH 350 (873)
T ss_pred chhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccc
Confidence 5555555555555443344444455555555555544432222 44444445554443
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=1.8e-23 Score=210.90 Aligned_cols=141 Identities=26% Similarity=0.366 Sum_probs=74.7
Q ss_pred EEEEeccCCCCcccccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCC
Q 043039 546 SILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGI 625 (949)
Q Consensus 546 l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i 625 (949)
+.++++....+|+++..+..+..|+.+.|.+..+|.....+..|+.|+.+.|. ...+|++++.+..|..|+..+|++
T Consensus 73 l~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~---~~el~~~i~~~~~l~dl~~~~N~i 149 (565)
T KOG0472|consen 73 LNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE---LKELPDSIGRLLDLEDLDATNNQI 149 (565)
T ss_pred EEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc---eeecCchHHHHhhhhhhhcccccc
Confidence 34444444444555555555555555555555555555555555555555555 445555555555555555555555
Q ss_pred cccchhhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccccCCcCCCCCCCCcccCc
Q 043039 626 EELPETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSE 690 (949)
Q Consensus 626 ~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~ 690 (949)
+++|+.+..+.+|..|++.+|. +.++|+..-.+++|++|+...|.++.+|..++.|.+|..|++
T Consensus 150 ~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL 213 (565)
T KOG0472|consen 150 SSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYL 213 (565)
T ss_pred ccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHh
Confidence 5555555555555555555544 444554444455555555555555555555555555555543
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.2e-21 Score=206.55 Aligned_cols=342 Identities=20% Similarity=0.230 Sum_probs=248.4
Q ss_pred cCCceEEEEEeccCCCCcccccCCCCceEEEecCCCCCCcc-hhhccCCceeEEEeCCccccccccccc-cccCCCCCCe
Q 043039 540 YEKLRHSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMP-SFFDQLTCLRALRIGKYGDDAIERIPN-GIEKLIHLRY 617 (949)
Q Consensus 540 ~~~~r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~-~~~~~l~~Lr~L~L~~~~~~~~~~lp~-~i~~l~~L~~ 617 (949)
.++++.+.+..+....+|.......+|..|+|.+|.++++. +.++-++.||+|||+.|. +..+|. ++..-.++++
T Consensus 101 l~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~---is~i~~~sfp~~~ni~~ 177 (873)
T KOG4194|consen 101 LPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL---ISEIPKPSFPAKVNIKK 177 (873)
T ss_pred CCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch---hhcccCCCCCCCCCceE
Confidence 46788888888888888887777888999999999998874 467888999999999998 777764 4666689999
Q ss_pred eeecccCCcccc-hhhcCCCCCcEEeecCCCCCCcccccc-ccCCCCCeeeCCCcccccCC-cCCCCCCCCcccCcccee
Q 043039 618 LKLFFVGIEELP-ETFCELFNLQNLDLRRCSKFKRLPQNI-GKLVNLRHLIFDEDDLDYMP-KGMGSLTGLRTLSEFVAV 694 (949)
Q Consensus 618 L~L~~~~i~~lp-~~l~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~L~l~~~~l~~~p-~~i~~l~~L~~L~~~~~~ 694 (949)
|+|++|.|+.+- ..|..|.+|-+|.|++|. +..+|... .+|++|+.|++..|.|..+. -.+..|.+|+.|.+..
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqr-- 254 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQR-- 254 (873)
T ss_pred EeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhh--
Confidence 999999999874 568888999999999988 88888654 55999999999999887552 3478888999888544
Q ss_pred cCCCccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCC
Q 043039 695 SGGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRP 774 (949)
Q Consensus 695 ~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~ 774 (949)
++........+-.+.++..|. +....+..+ ....+.+++.|+.|++++|.+... -..+++.
T Consensus 255 --N~I~kL~DG~Fy~l~kme~l~--L~~N~l~~v------n~g~lfgLt~L~~L~lS~NaI~ri---------h~d~Wsf 315 (873)
T KOG4194|consen 255 --NDISKLDDGAFYGLEKMEHLN--LETNRLQAV------NEGWLFGLTSLEQLDLSYNAIQRI---------HIDSWSF 315 (873)
T ss_pred --cCcccccCcceeeecccceee--cccchhhhh------hcccccccchhhhhccchhhhhee---------ecchhhh
Confidence 222111122222233333221 111111111 123467889999999999987654 4566778
Q ss_pred CCCcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCCCCCC-CCCCCCcceeeecCCCCcEEeCCcccCCCCCCCCc
Q 043039 775 HPNLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMPP-LGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPR 853 (949)
Q Consensus 775 ~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~ 853 (949)
+++|+.|+|++|.++.--+..+..+..|+.|.|+.|.+...-.. |..+.+|+.|+|+++. +....++ ......++|+
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~-ls~~IED-aa~~f~gl~~ 393 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIED-AAVAFNGLPS 393 (873)
T ss_pred cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe-EEEEEec-chhhhccchh
Confidence 89999999999999983456677899999999999987654443 7789999999998876 3332222 1111225788
Q ss_pred cceeeeccccccccccccccccccccccceeccccCccCcCCCCCCCCCCCcceEEEcc
Q 043039 854 LKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKMLPDQVLRSTTLKKLEIND 912 (949)
Q Consensus 854 L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~ 912 (949)
|++|.+.+ .+++.+.. ..+..+++|+.|+|.+|+.-..-|..+.++ .|++|.+..
T Consensus 394 LrkL~l~g-Nqlk~I~k--rAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 394 LRKLRLTG-NQLKSIPK--RAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hhheeecC-ceeeecch--hhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 88888866 23333332 346689999999999997666667777777 888887654
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.82 E-value=1.8e-19 Score=226.00 Aligned_cols=334 Identities=21% Similarity=0.278 Sum_probs=248.1
Q ss_pred CCceEEEEEeccCCCC---cccccCCCCceEEEecCCCCC-------CcchhhccCC-ceeEEEeCCccccccccccccc
Q 043039 541 EKLRHSILVLHYNASF---PVSIFNAKKLRSLLIQGYSLQ-------HMPSFFDQLT-CLRALRIGKYGDDAIERIPNGI 609 (949)
Q Consensus 541 ~~~r~l~l~~~~~~~l---~~~~~~~~~Lr~L~l~~~~l~-------~l~~~~~~l~-~Lr~L~L~~~~~~~~~~lp~~i 609 (949)
..++++++.......+ +..|.++++|+.|.+.++... .+|..|..++ .||.|++.++. +..+|..+
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~---l~~lP~~f 608 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP---LRCMPSNF 608 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC---CCCCCCcC
Confidence 3556666654443322 346788999999999765321 3566666654 69999999988 88999877
Q ss_pred cCCCCCCeeeecccCCcccchhhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCC-cccccCCcCCCCCCCCccc
Q 043039 610 EKLIHLRYLKLFFVGIEELPETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDE-DDLDYMPKGMGSLTGLRTL 688 (949)
Q Consensus 610 ~~l~~L~~L~L~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~-~~l~~~p~~i~~l~~L~~L 688 (949)
.+.+|+.|+++++.+..+|..+..+++|+.|+|++|..+..+| .++.+++|+.|++.+ +.+..+|..++++++|+.|
T Consensus 609 -~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 609 -RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred -CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 5789999999999999999999999999999999998888888 588999999999754 5688999999999999999
Q ss_pred CccceecCCCccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHH
Q 043039 689 SEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAI 768 (949)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 768 (949)
++..+..... . ...+ .++.|. .+.+.+|..+..+. ....+|+.|+++.+.+.. +
T Consensus 687 ~L~~c~~L~~-L---p~~i----~l~sL~-~L~Lsgc~~L~~~p-------~~~~nL~~L~L~~n~i~~----------l 740 (1153)
T PLN03210 687 DMSRCENLEI-L---PTGI----NLKSLY-RLNLSGCSRLKSFP-------DISTNISWLDLDETAIEE----------F 740 (1153)
T ss_pred eCCCCCCcCc-c---CCcC----CCCCCC-EEeCCCCCCccccc-------cccCCcCeeecCCCcccc----------c
Confidence 8665211111 1 1111 233333 55566665544332 124678899998876542 2
Q ss_pred hhcCCCCCCcCceEEeccccCC------CC-CchhhcccCCcEEEEeccCCCCCCCC-CCCCCCcceeeecCCCCcEEeC
Q 043039 769 IEALRPHPNLESLQISFYEVKA------RF-PNWILSLNKLRMLCLSFCKKCEIMPP-LGKLQSLEVLDIWEMHGIKRVG 840 (949)
Q Consensus 769 ~~~l~~~~~L~~L~L~~~~~~~------~~-p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~ 840 (949)
+..+ .+++|++|.+.++.... .+ |.....+++|+.|+|++|.....+|. ++++++|+.|+|.+|..++.++
T Consensus 741 P~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP 819 (1153)
T PLN03210 741 PSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP 819 (1153)
T ss_pred cccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence 3322 46788888887754322 01 12223467999999999987776665 8999999999999999888776
Q ss_pred CcccCCCCCCCCccceeeeccccccccccccccccccccccceeccccCccCcCCCCCCCCCCCcceEEEccCCChhHH
Q 043039 841 DEVLGIEIIAFPRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKMLPDQVLRSTTLKKLEINDCPILEKS 919 (949)
Q Consensus 841 ~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~ 919 (949)
... .+++|+.|.+.+|..+..+. . ..++|+.|+|++| .++.+|..+..+++|+.|++.+|++++..
T Consensus 820 ~~~------~L~sL~~L~Ls~c~~L~~~p---~---~~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 820 TGI------NLESLESLDLSGCSRLRTFP---D---ISTNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred CCC------CccccCEEECCCCCcccccc---c---cccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCcc
Confidence 533 57899999999988765443 2 2468999999988 78899999999999999999999998763
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.80 E-value=1.2e-22 Score=204.95 Aligned_cols=342 Identities=21% Similarity=0.249 Sum_probs=233.2
Q ss_pred CceEEEEEeccCCCCcccccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeec
Q 043039 542 KLRHSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLF 621 (949)
Q Consensus 542 ~~r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~ 621 (949)
.+..+.+.++....+.+.+.++..|.+|.+..|.+..+|..+..+..++.|+.+.|. +..+|..++.+..|+.|+.+
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~---ls~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK---LSELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccch---HhhccHHHhhhhhhhhhhcc
Confidence 345566666777666777888999999999999999999889899999999999998 88999999999999999999
Q ss_pred ccCCcccchhhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccccCCcCCCCCCCCcccCccceecCCCccC
Q 043039 622 FVGIEELPETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEFVAVSGGGKYG 701 (949)
Q Consensus 622 ~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~ 701 (949)
+|.+.++|++++.+..|+.|+..+|+ +..+|.+++++.+|..|++.+|+++.+|+..-+++.|++|+...|.- .
T Consensus 123 ~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L-----~ 196 (565)
T KOG0472|consen 123 SNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLL-----E 196 (565)
T ss_pred ccceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhh-----h
Confidence 99999999999999999999999887 88999999999999999999999999988777799999998543211 1
Q ss_pred CCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCce
Q 043039 702 SKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESL 781 (949)
Q Consensus 702 ~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 781 (949)
.....+..+..|..|- +. .....+...+.+|..|.+|.++.|.+... -.+....+++|..|
T Consensus 197 tlP~~lg~l~~L~~Ly--L~--------~Nki~~lPef~gcs~L~Elh~g~N~i~~l---------pae~~~~L~~l~vL 257 (565)
T KOG0472|consen 197 TLPPELGGLESLELLY--LR--------RNKIRFLPEFPGCSLLKELHVGENQIEML---------PAEHLKHLNSLLVL 257 (565)
T ss_pred cCChhhcchhhhHHHH--hh--------hcccccCCCCCccHHHHHHHhcccHHHhh---------HHHHhcccccceee
Confidence 1233444444443210 10 00111112344555666666655543321 11223455666666
Q ss_pred EEeccccCCCCCchhhcccCCcEEEEeccCCCCCCCCCCCCCCcceeeecCCCC--------------------------
Q 043039 782 QISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMPPLGKLQSLEVLDIWEMHG-------------------------- 835 (949)
Q Consensus 782 ~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~-------------------------- 835 (949)
+|..|.+.. .|..+.-+.+|.+|++++|.+..-++.+|++ +|+.|.+.|++-
T Consensus 258 DLRdNklke-~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~d 335 (565)
T KOG0472|consen 258 DLRDNKLKE-VPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDD 335 (565)
T ss_pred ecccccccc-CchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccC
Confidence 666666666 6666666666666777666666555566666 666666666641
Q ss_pred --------------------------------------cEEeCCcccCCC------------------CCCCCccceeee
Q 043039 836 --------------------------------------IKRVGDEVLGIE------------------IIAFPRLKKFTL 859 (949)
Q Consensus 836 --------------------------------------l~~~~~~~~~~~------------------~~~f~~L~~L~l 859 (949)
++.++.+++... +..++.++.+.-
T Consensus 336 glS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT 415 (565)
T KOG0472|consen 336 GLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVT 415 (565)
T ss_pred CCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHH
Confidence 111111111000 001111111110
Q ss_pred ccccccccccccccccccccccceeccccCccCcCCCCCCCCCCCcceEEEccCC
Q 043039 860 WSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKMLPDQVLRSTTLKKLEINDCP 914 (949)
Q Consensus 860 ~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 914 (949)
.-..+++...+.|..+.++++|..|++++| .+..+|..++.+..|+.|+|+.|.
T Consensus 416 ~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~Nr 469 (565)
T KOG0472|consen 416 DLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNR 469 (565)
T ss_pred HHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheecccccc
Confidence 001122334455666788999999999887 789999988999999999999884
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.72 E-value=9.8e-20 Score=202.91 Aligned_cols=101 Identities=24% Similarity=0.325 Sum_probs=58.8
Q ss_pred ceEEEEEeccCCCCcccccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecc
Q 043039 543 LRHSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFF 622 (949)
Q Consensus 543 ~r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~ 622 (949)
++.+.+.++....+|..+..+.+|+.|.++.|.+..+|....++++|++|.|.+|. ...+|.++..+++|+||++++
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~---l~~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNR---LQSLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccch---hhcCchhHHhhhcccccccch
Confidence 45555555555555555555556666666665555555555555566666665555 555555566666666666666
Q ss_pred cCCcccchhhcCCCCCcEEeecCC
Q 043039 623 VGIEELPETFCELFNLQNLDLRRC 646 (949)
Q Consensus 623 ~~i~~lp~~l~~L~~L~~L~L~~~ 646 (949)
|.+..+|..+..+..+..++.++|
T Consensus 124 N~f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 124 NHFGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred hccCCCchhHHhhhHHHHHhhhcc
Confidence 665555555555555555555555
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.63 E-value=6.1e-18 Score=188.82 Aligned_cols=322 Identities=23% Similarity=0.314 Sum_probs=160.1
Q ss_pred CCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccchhhcCCCCCcEE
Q 043039 562 NAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPETFCELFNLQNL 641 (949)
Q Consensus 562 ~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L~~L 641 (949)
++-+|++|++++|.+...|..+..+.+|+.|+++.|. +..+|.++.++.+|++|+|.+|.+..+|.++..+++|++|
T Consensus 43 ~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~---i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~L 119 (1081)
T KOG0618|consen 43 KRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY---IRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYL 119 (1081)
T ss_pred heeeeEEeeccccccccCCchhhhHHHHhhcccchhh---HhhCchhhhhhhcchhheeccchhhcCchhHHhhhccccc
Confidence 3444666666666666666666666666666666666 6666666666666666666666666666666666666666
Q ss_pred eecCCCCCCccccccccCCCCCeeeCCCc-ccccCCcCCCCCCCCcccCccceecCCCccCCCccCcccccc---c--cc
Q 043039 642 DLRRCSKFKRLPQNIGKLVNLRHLIFDED-DLDYMPKGMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRH---M--NH 715 (949)
Q Consensus 642 ~L~~~~~l~~lp~~i~~L~~L~~L~l~~~-~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~---L--~~ 715 (949)
+++.|. ...+|..+..++.+..+..++| .+..++ .+. ++.+++-.+...... ...+..++. | +.
T Consensus 120 dlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg----~~~-ik~~~l~~n~l~~~~----~~~i~~l~~~ldLr~N~ 189 (1081)
T KOG0618|consen 120 DLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLG----QTS-IKKLDLRLNVLGGSF----LIDIYNLTHQLDLRYNE 189 (1081)
T ss_pred ccchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhc----ccc-chhhhhhhhhcccch----hcchhhhheeeecccch
Confidence 666665 5556666655555555555444 111111 111 222222111111110 001111111 0 00
Q ss_pred CCCceEEccCCCCCChhhhhhh---cccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCC
Q 043039 716 LRGSLKIRGLGNVTDVDAAKNA---ELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARF 792 (949)
Q Consensus 716 L~~~l~i~~~~~l~~~~~~~~~---~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~ 792 (949)
+. .+.+..+..++.+....+. .-...++|+.|..++|.+... ..-..+.+|++++++.+++.. +
T Consensus 190 ~~-~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~-----------~~~p~p~nl~~~dis~n~l~~-l 256 (1081)
T KOG0618|consen 190 ME-VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTL-----------DVHPVPLNLQYLDISHNNLSN-L 256 (1081)
T ss_pred hh-hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceee-----------ccccccccceeeecchhhhhc-c
Confidence 00 1112222222222211110 011234555555555544321 111223466777777766666 6
Q ss_pred CchhhcccCCcEEEEeccCC-----------------------CCCCCCCCCCCCcceeeecCCCCcEEeCCcccC----
Q 043039 793 PNWILSLNKLRMLCLSFCKK-----------------------CEIMPPLGKLQSLEVLDIWEMHGIKRVGDEVLG---- 845 (949)
Q Consensus 793 p~~~~~l~~L~~L~L~~~~~-----------------------~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~---- 845 (949)
|+|++.+++|+.|...+|.+ .-..+.++.+.+|++|+|..+. +..++..+..
T Consensus 257 p~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~ 335 (1081)
T KOG0618|consen 257 PEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNA 335 (1081)
T ss_pred hHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhH
Confidence 67776666666666655543 3334446678999999997665 4433322111
Q ss_pred -----------------CCCCCCCccceeeeccccccccccccccccccccccceeccccCccCcCCCC-CCCCCCCcce
Q 043039 846 -----------------IEIIAFPRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKMLPD-QVLRSTTLKK 907 (949)
Q Consensus 846 -----------------~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~ 907 (949)
.+...++.|..|.+.+ ..+++-++. .+..+++|+.|+|++| .|.++|. .+.++..|++
T Consensus 336 ~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan-N~Ltd~c~p--~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~Lee 411 (1081)
T KOG0618|consen 336 SLNTLNVSSNKLSTLPSYEENNHAALQELYLAN-NHLTDSCFP--VLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEE 411 (1081)
T ss_pred HHHHHhhhhccccccccccchhhHHHHHHHHhc-Ccccccchh--hhccccceeeeeeccc-ccccCCHHHHhchHHhHH
Confidence 0111333444444433 122332222 2335666666666666 5666664 3445566666
Q ss_pred EEEccCC
Q 043039 908 LEINDCP 914 (949)
Q Consensus 908 L~l~~c~ 914 (949)
|+++||.
T Consensus 412 L~LSGNk 418 (1081)
T KOG0618|consen 412 LNLSGNK 418 (1081)
T ss_pred Hhcccch
Confidence 6666664
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.59 E-value=9.2e-15 Score=169.63 Aligned_cols=253 Identities=16% Similarity=0.136 Sum_probs=138.0
Q ss_pred EEEEEeccCCCCcccccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccC
Q 043039 545 HSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVG 624 (949)
Q Consensus 545 ~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~ 624 (949)
.+.+..+.+..+|..+. ++|+.|.+.+|.++.+|. .+++|+.|+|++|. +..+|.. .++|+.|++++|.
T Consensus 205 ~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~---LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 205 VLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ---LTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred EEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCc---cCcccCc---ccccceeeccCCc
Confidence 44555555556665553 367777777777776665 24567777777776 5566542 3466777777777
Q ss_pred CcccchhhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccccCCcCCCCCCCCcccCccceecCCCccCCCc
Q 043039 625 IEELPETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEFVAVSGGGKYGSKA 704 (949)
Q Consensus 625 i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~ 704 (949)
+..+|... .+|+.|++++|. +..+|.. +++|+.|++++|+++.+|.... +|+.|.+.. +.
T Consensus 274 L~~Lp~lp---~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~---~L~~L~Ls~----N~------ 333 (788)
T PRK15387 274 LTHLPALP---SGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLASLPALPS---ELCKLWAYN----NQ------ 333 (788)
T ss_pred hhhhhhch---hhcCEEECcCCc-ccccccc---ccccceeECCCCccccCCCCcc---ccccccccc----Cc------
Confidence 77666532 456677777765 6666642 3567777777777766664322 233333211 00
Q ss_pred cCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEe
Q 043039 705 CNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQIS 784 (949)
Q Consensus 705 ~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~ 784 (949)
+. .++. ...+|+.|++++|.+... +. .+++|+.|+++
T Consensus 334 -----------L~------~LP~-------------lp~~Lq~LdLS~N~Ls~L----------P~---lp~~L~~L~Ls 370 (788)
T PRK15387 334 -----------LT------SLPT-------------LPSGLQELSVSDNQLASL----------PT---LPSELYKLWAY 370 (788)
T ss_pred -----------cc------cccc-------------cccccceEecCCCccCCC----------CC---CCcccceehhh
Confidence 00 0000 013566777777665431 11 13467777777
Q ss_pred ccccCCCCCchhhcccCCcEEEEeccCCCCCCCCCCCCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceeeeccccc
Q 043039 785 FYEVKARFPNWILSLNKLRMLCLSFCKKCEIMPPLGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDG 864 (949)
Q Consensus 785 ~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~ 864 (949)
+|.+.. +|.. .++|+.|+|++|.+.. +|.. .++|+.|+++++. ++.++. .+.+|+.|.+.+
T Consensus 371 ~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l--~s~L~~LdLS~N~-LssIP~--------l~~~L~~L~Ls~--- 431 (788)
T PRK15387 371 NNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL--PSELKELMVSGNR-LTSLPM--------LPSGLLSLSVYR--- 431 (788)
T ss_pred cccccc-Cccc---ccccceEEecCCcccC-CCCc--ccCCCEEEccCCc-CCCCCc--------chhhhhhhhhcc---
Confidence 777665 6653 2467777777776553 3321 2467777776654 222211 223444444433
Q ss_pred cccccccccccccccccceeccccCcc
Q 043039 865 WEEWEFIEENITIMPQLNSLAIRDCSK 891 (949)
Q Consensus 865 l~~~~~~~~~~~~l~~L~~L~l~~c~~ 891 (949)
+. +..+|..+..+++|+.|+|++|+.
T Consensus 432 Nq-Lt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 432 NQ-LTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred Cc-ccccChHHhhccCCCeEECCCCCC
Confidence 11 223344455566666666666644
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.54 E-value=3.5e-14 Score=164.88 Aligned_cols=257 Identities=18% Similarity=0.186 Sum_probs=154.4
Q ss_pred CCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccchhhcCCCCCcEEee
Q 043039 564 KKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPETFCELFNLQNLDL 643 (949)
Q Consensus 564 ~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L~~L~L 643 (949)
.+-..|+++++.++.+|..+. ++|+.|++.+|. ++.+|. .+++|++|++++|+++.+|.. .++|+.|++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~---Lt~LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNN---LTSLPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCc---CCCCCC---CCCCCcEEEecCCccCcccCc---ccccceeec
Confidence 335567777777777776553 367777887776 666664 246778888888877777743 356777788
Q ss_pred cCCCCCCccccccccCCCCCeeeCCCcccccCCcCCCCCCCCcccCccceecCCCccCCCccCcccccccccCCCceEEc
Q 043039 644 RRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKIR 723 (949)
Q Consensus 644 ~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~ 723 (949)
++|. +..+|.. ..+|+.|++++|+++.+|.. +++|+.|++..| . +.
T Consensus 270 s~N~-L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N----~-----------------L~------ 315 (788)
T PRK15387 270 FSNP-LTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN----Q-----------------LA------ 315 (788)
T ss_pred cCCc-hhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCC----c-----------------cc------
Confidence 7776 6666642 24567777777777777653 355666664321 1 00
Q ss_pred cCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhhcccCCc
Q 043039 724 GLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWILSLNKLR 803 (949)
Q Consensus 724 ~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~ 803 (949)
.++. ...+|..|.+++|.+.. ++. .+.+|+.|+|++|.+.. +|.. .++|+
T Consensus 316 ~Lp~-------------lp~~L~~L~Ls~N~L~~----------LP~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~ 365 (788)
T PRK15387 316 SLPA-------------LPSELCKLWAYNNQLTS----------LPT---LPSGLQELSVSDNQLAS-LPTL---PSELY 365 (788)
T ss_pred cCCC-------------CcccccccccccCcccc----------ccc---cccccceEecCCCccCC-CCCC---Ccccc
Confidence 0000 01234555666655432 111 12467788888777776 6653 35677
Q ss_pred EEEEeccCCCCCCCCCCCCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceeeeccccccccccccccccccccccce
Q 043039 804 MLCLSFCKKCEIMPPLGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEWEFIEENITIMPQLNS 883 (949)
Q Consensus 804 ~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~ 883 (949)
.|++++|.+.. +|.+ .++|+.|++++|. +..++ ..+++|+.|++++.. +. .+|. ...+|+.
T Consensus 366 ~L~Ls~N~L~~-LP~l--~~~L~~LdLs~N~-Lt~LP--------~l~s~L~~LdLS~N~-Ls---sIP~---l~~~L~~ 426 (788)
T PRK15387 366 KLWAYNNRLTS-LPAL--PSGLKELIVSGNR-LTSLP--------VLPSELKELMVSGNR-LT---SLPM---LPSGLLS 426 (788)
T ss_pred eehhhcccccc-Cccc--ccccceEEecCCc-ccCCC--------CcccCCCEEEccCCc-CC---CCCc---chhhhhh
Confidence 77777776553 4432 3467777776654 22222 123567777665531 22 2222 1346777
Q ss_pred eccccCccCcCCCCCCCCCCCcceEEEccCCC
Q 043039 884 LAIRDCSKLKMLPDQVLRSTTLKKLEINDCPI 915 (949)
Q Consensus 884 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 915 (949)
|++++| .++.+|..+..+++|+.|++++|+.
T Consensus 427 L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 427 LSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred hhhccC-cccccChHHhhccCCCeEECCCCCC
Confidence 778776 5677777777777888888887774
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.54 E-value=2.4e-14 Score=167.59 Aligned_cols=199 Identities=17% Similarity=0.279 Sum_probs=102.1
Q ss_pred ceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccchhhcCCCCCcEEeecC
Q 043039 566 LRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPETFCELFNLQNLDLRR 645 (949)
Q Consensus 566 Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L~~L~L~~ 645 (949)
...|.++++.++.+|..+. ++|+.|+|++|. +..+|..+. .+|++|++++|.++.+|..+. .+|+.|+|++
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~---LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP--EQITTLILDNNE---LKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCCcCcCCcccc--cCCcEEEecCCC---CCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcC
Confidence 3445555555555554332 345556665555 555554433 356666666666655555432 3466666666
Q ss_pred CCCCCccccccccCCCCCeeeCCCcccccCCcCCCCCCCCcccCccceecCCCccCCCccCcccccccccCCCceEEccC
Q 043039 646 CSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKIRGL 725 (949)
Q Consensus 646 ~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~ 725 (949)
|. +..+|..+. .+|+.|++++|+++.+|..+. ++|+.|++..| . ++.+...
T Consensus 251 N~-L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N----~--------------Lt~LP~~------ 301 (754)
T PRK15370 251 NR-ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN----S--------------IRTLPAH------ 301 (754)
T ss_pred Cc-cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC----c--------------cccCccc------
Confidence 55 445555443 356666666666665554442 24555543221 0 0000000
Q ss_pred CCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhhcccCCcEE
Q 043039 726 GNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWILSLNKLRML 805 (949)
Q Consensus 726 ~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L 805 (949)
+ .++|+.|++++|.+.. ++..+ +++|+.|++++|.++. +|..+. ++|+.|
T Consensus 302 -------------l--p~sL~~L~Ls~N~Lt~----------LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L 351 (754)
T PRK15370 302 -------------L--PSGITHLNVQSNSLTA----------LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVL 351 (754)
T ss_pred -------------c--hhhHHHHHhcCCcccc----------CCccc--cccceeccccCCcccc-CChhhc--CcccEE
Confidence 0 0134444555544332 11111 2578888888887776 776553 678888
Q ss_pred EEeccCCCCCCCCCCCCCCcceeeecCCC
Q 043039 806 CLSFCKKCEIMPPLGKLQSLEVLDIWEMH 834 (949)
Q Consensus 806 ~L~~~~~~~~~~~l~~l~~L~~L~L~~~~ 834 (949)
+|++|.+......+ .++|+.|+|++|.
T Consensus 352 ~Ls~N~L~~LP~~l--p~~L~~LdLs~N~ 378 (754)
T PRK15370 352 DVSKNQITVLPETL--PPTITTLDVSRNA 378 (754)
T ss_pred ECCCCCCCcCChhh--cCCcCEEECCCCc
Confidence 88887655322222 2567777776654
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.49 E-value=7e-14 Score=163.67 Aligned_cols=246 Identities=19% Similarity=0.265 Sum_probs=172.5
Q ss_pred CceEEEEEeccCCCCcccccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeec
Q 043039 542 KLRHSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLF 621 (949)
Q Consensus 542 ~~r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~ 621 (949)
+...+.+.......+|..+ .++|+.|++++|.++.+|..+. ++|+.|++++|. +..+|..+. .+|+.|+|+
T Consensus 179 ~~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~---LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI--PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ---LTSIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCcCCccc--ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc---cccCChhhh--ccccEEECc
Confidence 3445666666666667655 3579999999999999987553 589999999998 778887654 479999999
Q ss_pred ccCCcccchhhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccccCCcCCCCCCCCcccCccceecCCCccC
Q 043039 622 FVGIEELPETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEFVAVSGGGKYG 701 (949)
Q Consensus 622 ~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~ 701 (949)
+|.+..+|..+. .+|+.|++++|. +..+|..+. .+|++|++++|+++.+|..+. ++|+.|++.. +.
T Consensus 250 ~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~----N~--- 315 (754)
T PRK15370 250 INRITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQS----NS--- 315 (754)
T ss_pred CCccCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcC----Cc---
Confidence 999999998775 589999999876 778887664 589999999999998886653 3566666432 11
Q ss_pred CCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCce
Q 043039 702 SKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESL 781 (949)
Q Consensus 702 ~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 781 (949)
+. . ++. ...++|+.|.+++|.+.. ++..+ +++|+.|
T Consensus 316 --------------Lt-~-----LP~------------~l~~sL~~L~Ls~N~Lt~----------LP~~l--~~sL~~L 351 (754)
T PRK15370 316 --------------LT-A-----LPE------------TLPPGLKTLEAGENALTS----------LPASL--PPELQVL 351 (754)
T ss_pred --------------cc-c-----CCc------------cccccceeccccCCcccc----------CChhh--cCcccEE
Confidence 10 0 000 012467888888887653 23333 3689999
Q ss_pred EEeccccCCCCCchhhcccCCcEEEEeccCCCCCCCCCCCCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceeeecc
Q 043039 782 QISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMPPLGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWS 861 (949)
Q Consensus 782 ~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~ 861 (949)
++++|.+.. +|..+ .++|+.|+|++|.+...++.+. ++|+.|++++|. +..++..+... ...+|.+..|.+.+
T Consensus 352 ~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~-L~~LP~sl~~~-~~~~~~l~~L~L~~ 424 (754)
T PRK15370 352 DVSKNQITV-LPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQASRNN-LVRLPESLPHF-RGEGPQPTRIIVEY 424 (754)
T ss_pred ECCCCCCCc-CChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCC-cccCchhHHHH-hhcCCCccEEEeeC
Confidence 999999886 88765 3789999999998775444333 478999998865 43343322111 01235555555543
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=1.3e-15 Score=136.33 Aligned_cols=145 Identities=29% Similarity=0.473 Sum_probs=100.0
Q ss_pred CCceEEEEEeccCCCCcccccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeee
Q 043039 541 EKLRHSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKL 620 (949)
Q Consensus 541 ~~~r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L 620 (949)
..+.++.++++....+|+.+..+.+|..|.+++|.++.+|..++.++.||.|++.-|. +..+|.+++.++.|+.|||
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr---l~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR---LNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh---hhcCccccCCCchhhhhhc
Confidence 4555666666666666667777777777777777777777667777777777776665 5566777777777777777
Q ss_pred cccCCc--ccchhhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccccCCcCCCCCCCCcccC
Q 043039 621 FFVGIE--ELPETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLS 689 (949)
Q Consensus 621 ~~~~i~--~lp~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~ 689 (949)
++|++. .+|..|..+.-|+-|.|++|. .+.+|.++++|++|+.|.+..|.+-++|+.++.++.|+.|.
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELH 179 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHh
Confidence 777665 466666666666677777665 66677777777777777766666667777777777666665
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.45 E-value=1.3e-15 Score=136.38 Aligned_cols=131 Identities=28% Similarity=0.426 Sum_probs=119.0
Q ss_pred ccccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccchhhcCCCC
Q 043039 558 VSIFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPETFCELFN 637 (949)
Q Consensus 558 ~~~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~ 637 (949)
..+.+++++..|.++.|.++.+|..+..+.+|++|++++|. ++++|.+++.|+.|+.|++.-|.+..+|..|+.++-
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq---ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~ 103 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ---IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPA 103 (264)
T ss_pred ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch---hhhcChhhhhchhhhheecchhhhhcCccccCCCch
Confidence 35567888999999999999998889999999999999998 999999999999999999999999999999999999
Q ss_pred CcEEeecCCCCC-CccccccccCCCCCeeeCCCcccccCCcCCCCCCCCcccCcc
Q 043039 638 LQNLDLRRCSKF-KRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEF 691 (949)
Q Consensus 638 L~~L~L~~~~~l-~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~ 691 (949)
|++|||.+|..- ..+|..+..++.|+-|+++.|.+..+|..++++++||.|.+.
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lr 158 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLR 158 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeec
Confidence 999999987733 358999999999999999999999999999999999998743
No 21
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.41 E-value=2e-11 Score=153.08 Aligned_cols=293 Identities=16% Similarity=0.196 Sum_probs=179.8
Q ss_pred cCccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeC-CCCCHHHHHHH
Q 043039 173 VSEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVS-DPFDVFRVWKA 251 (949)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~ 251 (949)
.+.++-|.+-.+.+.+ ....+++.|+|++|.||||++.++... +..++|+++. ...+...+...
T Consensus 13 ~~~~~~R~rl~~~l~~---------~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~ 77 (903)
T PRK04841 13 LHNTVVRERLLAKLSG---------ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASY 77 (903)
T ss_pred ccccCcchHHHHHHhc---------ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHH
Confidence 4457777766655532 124679999999999999999998863 2269999996 44566677777
Q ss_pred HHHhcCCCCCC-------------CcchHHHHHHHHhhhC--CceEEEEEeCCCCCCcccHHHHHHh-hhccCCCcEEEE
Q 043039 252 IIENLDGYTPD-------------LGELNTLHQLINNRIG--GKKVLLVLDDVWTEDGNKWESFQRC-LINAHRGSKILV 315 (949)
Q Consensus 252 i~~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~~~~~l~~~-l~~~~~gs~iiv 315 (949)
++..+...... ..+...+...+...+. +.+++|||||+...+......+... +.....+.++||
T Consensus 78 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~ 157 (903)
T PRK04841 78 LIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVV 157 (903)
T ss_pred HHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEE
Confidence 77766421111 0122223333333332 6799999999976543444433334 444456678989
Q ss_pred EccchhhH---hhhcCcceEeCC----CCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHHhhhc
Q 043039 316 TTRKETVA---RMIGSTCVISIE----ELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIGSLLR 388 (949)
Q Consensus 316 Ttr~~~v~---~~~~~~~~~~l~----~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~ 388 (949)
|||...-. .........++. +|+.+|+.++|....... -..+.+.+|.+.|+|.|+++..++..++
T Consensus 158 ~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-------~~~~~~~~l~~~t~Gwp~~l~l~~~~~~ 230 (903)
T PRK04841 158 LSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-------IEAAESSRLCDDVEGWATALQLIALSAR 230 (903)
T ss_pred EeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC-------CCHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 99984221 111122345566 999999999998764321 1244567899999999999999887775
Q ss_pred cCCC-HHHHHHHHhhhccchhh-hccchHHHHH-hccCCCChhHHHHHhhhcccCCCcccChhhHHHHHHHcCccccCCC
Q 043039 389 FKKA-REEWQSILDSEIWQVEE-FEKNLLPALL-LSYNDLPNEIKRCFSYCAVLPKECYVDRDELIKLWMAQGYIDQKGN 465 (949)
Q Consensus 389 ~~~~-~~~w~~~l~~~~~~~~~-~~~~i~~~l~-~sy~~L~~~~k~cf~~~a~fp~~~~i~~~~li~~w~aeg~i~~~~~ 465 (949)
.... ..... . .... ....+...+. -.++.||+..+..+...|+++. ++.+ +.. .+..
T Consensus 231 ~~~~~~~~~~---~----~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~~---~~~~-l~~-----~l~~---- 290 (903)
T PRK04841 231 QNNSSLHDSA---R----RLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLRS---MNDA-LIV-----RVTG---- 290 (903)
T ss_pred hCCCchhhhh---H----hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccccc---CCHH-HHH-----HHcC----
Confidence 4321 11110 0 1111 1123444433 3378999999999999999873 3322 221 1111
Q ss_pred hhhhhHHHHHHHHHHHHHHhccCcccccccCCCCEeEEEEchhHHHHHHHhh
Q 043039 466 KEMEMEMEMVGERYFDLLAKRSFFQEFEKHEEGNVKRYKMHDIVHGFAQLLT 517 (949)
Q Consensus 466 ~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~hdlv~~~~~~~~ 517 (949)
.+.+...++++.+.+++.....+ .+ ..|+.|++++++.....
T Consensus 291 -------~~~~~~~L~~l~~~~l~~~~~~~-~~--~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 -------EENGQMRLEELERQGLFIQRMDD-SG--EWFRYHPLFASFLRHRC 332 (903)
T ss_pred -------CCcHHHHHHHHHHCCCeeEeecC-CC--CEEehhHHHHHHHHHHH
Confidence 11235678899999986532211 11 24778999999887654
No 22
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.41 E-value=1.6e-10 Score=129.63 Aligned_cols=316 Identities=14% Similarity=0.091 Sum_probs=186.5
Q ss_pred ccCccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHH
Q 043039 172 NVSEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKA 251 (949)
Q Consensus 172 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 251 (949)
.++.++||++++++|...+...-. ......+.|+|++|+|||++++.++++.......-.++++++....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 456799999999999999854321 123345789999999999999999986433332345677888877888899999
Q ss_pred HHHhcCCC-CC-CCcchHHHHHHHHhhhC--CceEEEEEeCCCCCC----cccHHHHHHhhhccCCCcE--EEEEccchh
Q 043039 252 IIENLDGY-TP-DLGELNTLHQLINNRIG--GKKVLLVLDDVWTED----GNKWESFQRCLINAHRGSK--ILVTTRKET 321 (949)
Q Consensus 252 i~~~l~~~-~~-~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~----~~~~~~l~~~l~~~~~gs~--iivTtr~~~ 321 (949)
++.++... .+ .....+.+...+.+.+. +++.+||||+++... ...+..+...+.. ..+++ +|.++....
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcc
Confidence 99998752 22 22345566666666664 567899999997632 1222233222222 22333 566666543
Q ss_pred hHhhhc-------CcceEeCCCCChHhHHHHHHHHhhcc--CCCCCchhHHHHHHHHHHhcCCCchHHHHHHhhhc----
Q 043039 322 VARMIG-------STCVISIEELSEPECWSLFKRFAFLN--RSRSDCKQLEEIGRKITWKCKGLPLAVKTIGSLLR---- 388 (949)
Q Consensus 322 v~~~~~-------~~~~~~l~~l~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~---- 388 (949)
+..... ....+.+.+++.++..+++..++... .....+..++.+++......|..+.|+..+-....
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 332211 12468899999999999999886322 11123334444444444445667777777654321
Q ss_pred c-CC--CHHHHHHHHhhhccchhhhccchHHHHHhccCCCChhHHHHHhhhcccCC--CcccChhhHHHH--HHHcCccc
Q 043039 389 F-KK--AREEWQSILDSEIWQVEEFEKNLLPALLLSYNDLPNEIKRCFSYCAVLPK--ECYVDRDELIKL--WMAQGYID 461 (949)
Q Consensus 389 ~-~~--~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~a~fp~--~~~i~~~~li~~--w~aeg~i~ 461 (949)
. .. +.+....+.... -.....-.+..||.+.|..+..++...+ ...+....+... .+++.+-.
T Consensus 265 ~~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~ 334 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY 334 (394)
T ss_pred cCCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC
Confidence 1 11 345555544431 0122344578999988876655543321 123444444422 22221111
Q ss_pred cCCChhhhhHHHHHHHHHHHHHHhccCcccccc--cCCCCEeEEEEch
Q 043039 462 QKGNKEMEMEMEMVGERYFDLLAKRSFFQEFEK--HEEGNVKRYKMHD 507 (949)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~--~~~~~~~~~~~hd 507 (949)
..-+ ......++..|...+++..... +..|+.+.++++.
T Consensus 335 ~~~~-------~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~~ 375 (394)
T PRK00411 335 EPRT-------HTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLSY 375 (394)
T ss_pred CcCc-------HHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEecC
Confidence 1101 2234668999999999987543 3345555665553
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.35 E-value=3.9e-13 Score=159.87 Aligned_cols=254 Identities=22% Similarity=0.238 Sum_probs=159.6
Q ss_pred ccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccc-cccCCCCCCeeeecccC-CcccchhhcCCCC
Q 043039 560 IFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPN-GIEKLIHLRYLKLFFVG-IEELPETFCELFN 637 (949)
Q Consensus 560 ~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~-i~~lp~~l~~L~~ 637 (949)
..+....|...+.+|.+..++.. ..++.|++|-+.++.. .+..++. .|..++.|++|||++|. +.++|.+|++|-+
T Consensus 519 ~~~~~~~rr~s~~~~~~~~~~~~-~~~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIEHIAGS-SENPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred ccchhheeEEEEeccchhhccCC-CCCCccceEEEeecch-hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 34557889999999888777663 3556899999988752 1334443 47789999999999875 7899999999999
Q ss_pred CcEEeecCCCCCCccccccccCCCCCeeeCCCccc-ccCCcCCCCCCCCcccCccceecCCCccCCCccCcccccccccC
Q 043039 638 LQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDL-DYMPKGMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHL 716 (949)
Q Consensus 638 L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l-~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L 716 (949)
|++|+++++. +..+|.++++|++|.+|++..+.- ..+|..+..|++|++|.++... .......+.++..|..|
T Consensus 597 LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-----~~~~~~~l~el~~Le~L 670 (889)
T KOG4658|consen 597 LRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-----LSNDKLLLKELENLEHL 670 (889)
T ss_pred hhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-----cccchhhHHhhhcccch
Confidence 9999999987 899999999999999999776543 3444445569999999976522 11223344444444444
Q ss_pred CCceEEccCCCCCChhhhhhhcccCCCCCCe----EEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCC
Q 043039 717 RGSLKIRGLGNVTDVDAAKNAELEKKKNLIS----LELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARF 792 (949)
Q Consensus 717 ~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~----L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~ 792 (949)
. .+.+..... .....+..+..|.+ +.+..+.. ......+..+.+|+.|.+.+|++....
T Consensus 671 ~-~ls~~~~s~------~~~e~l~~~~~L~~~~~~l~~~~~~~----------~~~~~~~~~l~~L~~L~i~~~~~~e~~ 733 (889)
T KOG4658|consen 671 E-NLSITISSV------LLLEDLLGMTRLRSLLQSLSIEGCSK----------RTLISSLGSLGNLEELSILDCGISEIV 733 (889)
T ss_pred h-hheeecchh------HhHhhhhhhHHHHHHhHhhhhccccc----------ceeecccccccCcceEEEEcCCCchhh
Confidence 3 222221111 00011112222221 11111111 113445566777888888877775422
Q ss_pred Cchhh-----c-ccCCcEEEEeccCCCCCCCCCCCCCCcceeeecCCCCcEE
Q 043039 793 PNWIL-----S-LNKLRMLCLSFCKKCEIMPPLGKLQSLEVLDIWEMHGIKR 838 (949)
Q Consensus 793 p~~~~-----~-l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~ 838 (949)
..|.. . ++++..+...+|.....+.+.-..|+|+.|.+..|+.+++
T Consensus 734 ~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~ 785 (889)
T KOG4658|consen 734 IEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLED 785 (889)
T ss_pred cccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEeccccccc
Confidence 22321 1 4456666666666555555555567777777777765443
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.34 E-value=1.6e-13 Score=139.57 Aligned_cols=261 Identities=21% Similarity=0.225 Sum_probs=161.8
Q ss_pred CCCcccccCCCCceEEEecCCCCCCcch-hhccCCceeEEEeCCccccccccc-cccccCCCCCCeeeecc-cCCcccch
Q 043039 554 ASFPVSIFNAKKLRSLLIQGYSLQHMPS-FFDQLTCLRALRIGKYGDDAIERI-PNGIEKLIHLRYLKLFF-VGIEELPE 630 (949)
Q Consensus 554 ~~l~~~~~~~~~Lr~L~l~~~~l~~l~~-~~~~l~~Lr~L~L~~~~~~~~~~l-p~~i~~l~~L~~L~L~~-~~i~~lp~ 630 (949)
..+|..+ .+.-..+.|..|.++.+|. .|+.+++||.|||++|. |+.| |+.|.+|..|..|-+.+ |+|+.+|.
T Consensus 59 ~eVP~~L--P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~---Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 59 TEVPANL--PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN---ISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred ccCcccC--CCcceEEEeccCCcccCChhhccchhhhceecccccc---hhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 3445443 2456677888888888865 68888888888888888 6665 67788888887766655 77888884
Q ss_pred -hhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccccCCc-CCCCCCCCcccCccceecCCCccCCCccCcc
Q 043039 631 -TFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPK-GMGSLTGLRTLSEFVAVSGGGKYGSKACNLD 708 (949)
Q Consensus 631 -~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~ 708 (949)
.|.+|..||.|.+.-|..-......+..|++|..|.+..|.+..+++ .+..+.+++++.+..+-.. ..+.++
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~i------cdCnL~ 207 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFI------CDCNLP 207 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccc------cccccc
Confidence 47788888888888877444445667888888888888888888877 5777777777764332100 011111
Q ss_pred cccccc-----cCCC---------------ceEE----ccCCCC------CC--hhhhhhhcccCCCCCCeEEEEecCCC
Q 043039 709 GLRHMN-----HLRG---------------SLKI----RGLGNV------TD--VDAAKNAELEKKKNLISLELEFDKEE 756 (949)
Q Consensus 709 ~L~~L~-----~L~~---------------~l~i----~~~~~l------~~--~~~~~~~~l~~~~~L~~L~l~~~~~~ 756 (949)
.+.... ...| .+.- ..++.+ .. ........+..+++|++|++++|.+.
T Consensus 208 wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~ 287 (498)
T KOG4237|consen 208 WLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT 287 (498)
T ss_pred hhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence 111000 0000 0000 000000 00 00011123677889999999988876
Q ss_pred CcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCCCCCC-CCCCCCcceeeecCCC
Q 043039 757 EEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMPP-LGKLQSLEVLDIWEMH 834 (949)
Q Consensus 757 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~ 834 (949)
.. -..+|.....++.|.|..|.+...-...+..+..|+.|+|.+|++....|. |..+..|..|.|-.++
T Consensus 288 ~i---------~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 288 RI---------EDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hh---------hhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 54 334566667777777777766542223344677777777777777665554 6667777777775443
No 25
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.23 E-value=1.1e-09 Score=115.98 Aligned_cols=182 Identities=17% Similarity=0.141 Sum_probs=118.1
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHH----h-
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLIN----N- 275 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~----~- 275 (949)
.+++.|+|++|+||||+++.+++..... .+ .+.|+ +....+..+++..++..++..... .+.......+. .
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHH
Confidence 4588999999999999999999863321 11 22333 334567788899999888765332 22222223332 2
Q ss_pred hhCCceEEEEEeCCCCCCcccHHHHHHhhhcc---CCCcEEEEEccchhhHhhhc----------CcceEeCCCCChHhH
Q 043039 276 RIGGKKVLLVLDDVWTEDGNKWESFQRCLINA---HRGSKILVTTRKETVARMIG----------STCVISIEELSEPEC 342 (949)
Q Consensus 276 ~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~---~~gs~iivTtr~~~v~~~~~----------~~~~~~l~~l~~~~~ 342 (949)
...+++.+||+||+|..+...++.+....... .....|++|.... ....+. ....+.+.+++.+|.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 22678899999999987666666665432211 2223456666542 221111 134678999999999
Q ss_pred HHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHHhhh
Q 043039 343 WSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIGSLL 387 (949)
Q Consensus 343 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 387 (949)
.+++...+...+......-..+..+.|++.++|.|..+..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999998875433221222345788999999999999999988776
No 26
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.23 E-value=6.1e-09 Score=115.64 Aligned_cols=301 Identities=12% Similarity=0.089 Sum_probs=170.5
Q ss_pred cCccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccc-ccc---ceEEEEEeCCCCCHHHH
Q 043039 173 VSEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVS-NNF---NVMIWVCVSDPFDVFRV 248 (949)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f---~~~~wv~~~~~~~~~~~ 248 (949)
+..++||++++++|..+|..... ....+.+.|+|++|+|||++++.++++.... ... -.++|+++....+...+
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 34799999999999999864221 1234578999999999999999998752211 111 24678888877788899
Q ss_pred HHHHHHhcC---CCCC-CCcchHHHHHHHHhhhC--CceEEEEEeCCCCCCc---ccHHHHHHhh-hccC--CCcEEEEE
Q 043039 249 WKAIIENLD---GYTP-DLGELNTLHQLINNRIG--GKKVLLVLDDVWTEDG---NKWESFQRCL-INAH--RGSKILVT 316 (949)
Q Consensus 249 ~~~i~~~l~---~~~~-~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~---~~~~~l~~~l-~~~~--~gs~iivT 316 (949)
+..|++++. ...+ ...+..+....+.+.+. +++++||||+++.... .....+.... .... ....+|.+
T Consensus 92 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 92 LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEE
Confidence 999999884 2222 11233444555555553 6689999999976521 1112222110 1111 22345555
Q ss_pred ccchhhHhhhc-------CcceEeCCCCChHhHHHHHHHHhhcc-CCCCCchhHHHHHHHHHHhcCCCchHH-HHHHhhh
Q 043039 317 TRKETVARMIG-------STCVISIEELSEPECWSLFKRFAFLN-RSRSDCKQLEEIGRKITWKCKGLPLAV-KTIGSLL 387 (949)
Q Consensus 317 tr~~~v~~~~~-------~~~~~~l~~l~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~g~Plal-~~~~~~l 387 (949)
|........+. ....+.+.+.+.++..+++..++... ....-.++..+.+.+++....|.|-.+ ..+-...
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~ 251 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAG 251 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 54433221111 12468899999999999999887421 111122333445556677777887443 3322211
Q ss_pred ----ccC---CCHHHHHHHHhhhccchhhhccchHHHHHhccCCCChhHHHHHhhhcccC--CCcccChhhHHHHHH--H
Q 043039 388 ----RFK---KAREEWQSILDSEIWQVEEFEKNLLPALLLSYNDLPNEIKRCFSYCAVLP--KECYVDRDELIKLWM--A 456 (949)
Q Consensus 388 ----~~~---~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~a~fp--~~~~i~~~~li~~w~--a 456 (949)
..+ -+.+....+.... -.....-.+..||.+.+..+..++..- .+..+....+...+- +
T Consensus 252 ~~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~ 321 (365)
T TIGR02928 252 EIAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVC 321 (365)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 111 1333333333321 012234456788988886665544221 333455555555321 2
Q ss_pred cCc-cccCCChhhhhHHHHHHHHHHHHHHhccCccccc
Q 043039 457 QGY-IDQKGNKEMEMEMEMVGERYFDLLAKRSFFQEFE 493 (949)
Q Consensus 457 eg~-i~~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~ 493 (949)
+.+ +.+.+ +.....++..|...+++....
T Consensus 322 ~~~~~~~~~--------~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 322 EDIGVDPLT--------QRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HhcCCCCCc--------HHHHHHHHHHHHhcCCeEEEE
Confidence 211 11111 344577889999999998754
No 27
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.19 E-value=1.9e-09 Score=121.63 Aligned_cols=298 Identities=20% Similarity=0.232 Sum_probs=192.2
Q ss_pred cCccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCC-CCCHHHHHHH
Q 043039 173 VSEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSD-PFDVFRVWKA 251 (949)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~ 251 (949)
+...+-|.+- .+.|... .+.+.+.|..++|.|||||+.++... ...-..+.|.+.+. +.+...+..-
T Consensus 18 ~~~~v~R~rL----~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~~---~~~~~~v~Wlslde~dndp~rF~~y 85 (894)
T COG2909 18 PDNYVVRPRL----LDRLRRA-----NDYRLILISAPAGFGKTTLLAQWREL---AADGAAVAWLSLDESDNDPARFLSY 85 (894)
T ss_pred cccccccHHH----HHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHHh---cCcccceeEeecCCccCCHHHHHHH
Confidence 3445556554 4444332 36799999999999999999998751 22345699999864 5678888888
Q ss_pred HHHhcCCCCCCCc-------------chHHHHHHHHhhhC--CceEEEEEeCCCCCCccc-HHHHHHhhhccCCCcEEEE
Q 043039 252 IIENLDGYTPDLG-------------ELNTLHQLINNRIG--GKKVLLVLDDVWTEDGNK-WESFQRCLINAHRGSKILV 315 (949)
Q Consensus 252 i~~~l~~~~~~~~-------------~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~~-~~~l~~~l~~~~~gs~iiv 315 (949)
++..++.-.++.. +...+...+...+. .++..+||||..-..... ...+...+....++-.+||
T Consensus 86 Li~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv 165 (894)
T COG2909 86 LIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVV 165 (894)
T ss_pred HHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEE
Confidence 8888874433322 23334444444443 568999999985433233 3345555666778889999
Q ss_pred EccchhhHhhh---cCcceEeCC----CCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHHhhhc
Q 043039 316 TTRKETVARMI---GSTCVISIE----ELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIGSLLR 388 (949)
Q Consensus 316 Ttr~~~v~~~~---~~~~~~~l~----~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~ 388 (949)
|||++.-...- -....+++. .|+.+|+-++|...... +-.+...+.+.....|-+-|+..++-.++
T Consensus 166 ~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l-------~Ld~~~~~~L~~~teGW~~al~L~aLa~~ 238 (894)
T COG2909 166 TSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL-------PLDAADLKALYDRTEGWAAALQLIALALR 238 (894)
T ss_pred EeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC-------CCChHHHHHHHhhcccHHHHHHHHHHHcc
Confidence 99996543211 112344444 58999999999886521 12244567888999999999999998887
Q ss_pred cCCCHHHHHHHHhhhccchhhhccchHH-HHHhccCCCChhHHHHHhhhcccCCCcccChhhHHHHHHHcCccccCCChh
Q 043039 389 FKKAREEWQSILDSEIWQVEEFEKNLLP-ALLLSYNDLPNEIKRCFSYCAVLPKECYVDRDELIKLWMAQGYIDQKGNKE 467 (949)
Q Consensus 389 ~~~~~~~w~~~l~~~~~~~~~~~~~i~~-~l~~sy~~L~~~~k~cf~~~a~fp~~~~i~~~~li~~w~aeg~i~~~~~~~ 467 (949)
.+.+.+.-...+... .+-+.+ ..+=-++.||+++|..++-||+++.-. ..|......
T Consensus 239 ~~~~~~q~~~~LsG~-------~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f~----~eL~~~Ltg----------- 296 (894)
T COG2909 239 NNTSAEQSLRGLSGA-------ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRFN----DELCNALTG----------- 296 (894)
T ss_pred CCCcHHHHhhhccch-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhh----HHHHHHHhc-----------
Confidence 444444433333311 111111 122236889999999999999986532 223322211
Q ss_pred hhhHHHHHHHHHHHHHHhccCcccccccCCCCEeEEEEchhHHHHHHHhhhh
Q 043039 468 MEMEMEMVGERYFDLLAKRSFFQEFEKHEEGNVKRYKMHDIVHGFAQLLTKV 519 (949)
Q Consensus 468 ~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~hdlv~~~~~~~~~~ 519 (949)
++.+..++++|.+++++-..-++.. .-|+.|.+..+|.......
T Consensus 297 -----~~ng~amLe~L~~~gLFl~~Ldd~~---~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 297 -----EENGQAMLEELERRGLFLQRLDDEG---QWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred -----CCcHHHHHHHHHhCCCceeeecCCC---ceeehhHHHHHHHHhhhcc
Confidence 3456778999999998764333322 3589999999998766543
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.18 E-value=1.9e-12 Score=141.44 Aligned_cols=113 Identities=19% Similarity=0.228 Sum_probs=55.5
Q ss_pred cCCCCceEEEecCCCCC-----CcchhhccCCceeEEEeCCcccc----ccccccccccCCCCCCeeeecccCCc-ccch
Q 043039 561 FNAKKLRSLLIQGYSLQ-----HMPSFFDQLTCLRALRIGKYGDD----AIERIPNGIEKLIHLRYLKLFFVGIE-ELPE 630 (949)
Q Consensus 561 ~~~~~Lr~L~l~~~~l~-----~l~~~~~~l~~Lr~L~L~~~~~~----~~~~lp~~i~~l~~L~~L~L~~~~i~-~lp~ 630 (949)
..+..|+.|.+.++.++ .++..+...+.|+.|+++++... .+..++..+..+++|++|++++|.+. ..+.
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 34455666666666653 23444555555666666655421 01122334555666666666666554 2233
Q ss_pred hhcCCCC---CcEEeecCCCCCC----ccccccccC-CCCCeeeCCCcccc
Q 043039 631 TFCELFN---LQNLDLRRCSKFK----RLPQNIGKL-VNLRHLIFDEDDLD 673 (949)
Q Consensus 631 ~l~~L~~---L~~L~L~~~~~l~----~lp~~i~~L-~~L~~L~l~~~~l~ 673 (949)
.+..+.+ |++|++++|.... .+...+..+ ++|+.|++++|.++
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 3333333 6666666655221 122333444 55555555555444
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.18 E-value=1.3e-12 Score=133.12 Aligned_cols=257 Identities=20% Similarity=0.266 Sum_probs=158.7
Q ss_pred EEecCCCCCCcchhhccCCceeEEEeCCccccccccccc-cccCCCCCCeeeecccCCccc-chhhcCCCCCcEEeecCC
Q 043039 569 LLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPN-GIEKLIHLRYLKLFFVGIEEL-PETFCELFNLQNLDLRRC 646 (949)
Q Consensus 569 L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~l-p~~l~~L~~L~~L~L~~~ 646 (949)
.+.++-.++.+|..+.. .-..+.|..|. |..+|+ +|+.+++||.|||+.|.|+.+ |..|.+|.+|-.|-+.++
T Consensus 51 VdCr~~GL~eVP~~LP~--~tveirLdqN~---I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLPP--ETVEIRLDQNQ---ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred EEccCCCcccCcccCCC--cceEEEeccCC---cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcC
Confidence 34455567777764432 45668888888 889986 589999999999999999988 788999999999988886
Q ss_pred CCCCccccc-cccCCCCCeeeCCCcccccCCc-CCCCCCCCcccCccceecCCCccCCCccCcccccccccCC---Cc-e
Q 043039 647 SKFKRLPQN-IGKLVNLRHLIFDEDDLDYMPK-GMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLR---GS-L 720 (949)
Q Consensus 647 ~~l~~lp~~-i~~L~~L~~L~l~~~~l~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~---~~-l 720 (949)
..++.+|+. +++|..|+.|.++-|++..++. .+..|++|..|.++++....- . ...+..+..++.+. +. .
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i-~---~~tf~~l~~i~tlhlA~np~i 201 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSI-C---KGTFQGLAAIKTLHLAQNPFI 201 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhh-c---cccccchhccchHhhhcCccc
Confidence 669999964 7899999999988888887764 578899999998887432211 0 11233333332221 11 1
Q ss_pred EEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhh-----------------hcHHHHhhcCCCCCCcCceEE
Q 043039 721 KIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDE-----------------VNHQAIIEALRPHPNLESLQI 783 (949)
Q Consensus 721 ~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-----------------~~~~~~~~~l~~~~~L~~L~L 783 (949)
...+++.+...........+.........+.+.......... .+...-...|..+++|+.|+|
T Consensus 202 cdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnl 281 (498)
T KOG4237|consen 202 CDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNL 281 (498)
T ss_pred cccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEecc
Confidence 122222222221111111111111111111111111000000 000001112566788888888
Q ss_pred eccccCCCCCchhhcccCCcEEEEeccCCCCCCCC-CCCCCCcceeeecCCC
Q 043039 784 SFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMPP-LGKLQSLEVLDIWEMH 834 (949)
Q Consensus 784 ~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~ 834 (949)
++|.++..-+.|+.....++.|.|..|++...-.. |..+..|+.|+|.++.
T Consensus 282 snN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~ 333 (498)
T KOG4237|consen 282 SNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQ 333 (498)
T ss_pred CCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCe
Confidence 88888875577787888888888888865443222 6777888888887665
No 30
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.16 E-value=1.7e-10 Score=119.75 Aligned_cols=195 Identities=19% Similarity=0.183 Sum_probs=101.4
Q ss_pred cccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHH---
Q 043039 176 VCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAI--- 252 (949)
Q Consensus 176 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i--- 252 (949)
|+||++|+++|.+++... ..+.+.|+|+.|+|||+|++.+.+.. +..-..++|+........ .....+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~--~~~~~~~~y~~~~~~~~~-~~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINEL--KEKGYKVVYIDFLEESNE-SSLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHC--T--EECCCHHCCTTBSHH-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHh--hhcCCcEEEEecccchhh-hHHHHHHHH
Confidence 799999999999999653 24588999999999999999998853 111113444444333322 222222
Q ss_pred -----------HHhcCCCC------CCCcchHHHHHHHHhhh--CCceEEEEEeCCCCCC------cccHHHHHHhhhc-
Q 043039 253 -----------IENLDGYT------PDLGELNTLHQLINNRI--GGKKVLLVLDDVWTED------GNKWESFQRCLIN- 306 (949)
Q Consensus 253 -----------~~~l~~~~------~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~------~~~~~~l~~~l~~- 306 (949)
...+.... ............+.+.+ .+++++||+||+.... ..-...+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 11111110 01112222223333333 2445999999995432 1112233333433
Q ss_pred -cCCCcEEEEEccchhhHhh--------hcCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCc
Q 043039 307 -AHRGSKILVTTRKETVARM--------IGSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLP 377 (949)
Q Consensus 307 -~~~gs~iivTtr~~~v~~~--------~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 377 (949)
......+|+++....+... .+....+.+++|+.+++++++...+-.. . .- +.-.+..++|+..+||+|
T Consensus 152 ~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~-~~-~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 152 LSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-I-KL-PFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp ---TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-H
T ss_pred cccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-h-cc-cCCHHHHHHHHHHhCCCH
Confidence 1233345555554433322 2234469999999999999999876432 1 11 223555689999999999
Q ss_pred hHHHH
Q 043039 378 LAVKT 382 (949)
Q Consensus 378 lal~~ 382 (949)
..|..
T Consensus 229 ~~l~~ 233 (234)
T PF01637_consen 229 RYLQE 233 (234)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88764
No 31
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.11 E-value=4.3e-09 Score=114.10 Aligned_cols=278 Identities=18% Similarity=0.164 Sum_probs=140.9
Q ss_pred cCccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 043039 173 VSEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAI 252 (949)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 252 (949)
-.+|+|+++.++.+..++..... .....+.+.|+|++|+||||+|+.+.+... ..+ .++... .......+..+
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l~--~~~---~~~~~~-~~~~~~~l~~~ 96 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEMG--VNI---RITSGP-ALEKPGDLAAI 96 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHhC--CCe---EEEecc-cccChHHHHHH
Confidence 35699999999999888864321 123355788999999999999999998632 221 112211 11111222222
Q ss_pred HHhcCCCCC-CCcch----HHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccchhhHhhhc
Q 043039 253 IENLDGYTP-DLGEL----NTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKETVARMIG 327 (949)
Q Consensus 253 ~~~l~~~~~-~~~~~----~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~ 327 (949)
+..+....- -.++. ....+.+...+.+.+..+|+|+..+... +...+ .+.+-|..|++...+...+.
T Consensus 97 l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~-----~~~~l---~~~~li~at~~~~~l~~~L~ 168 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARS-----IRLDL---PPFTLIGATTRAGLLTSPLR 168 (328)
T ss_pred HHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccc-----eeecC---CCceEEeecCCcccCCHHHH
Confidence 222211000 00000 0011122222233333333433321100 00001 12344555666443332221
Q ss_pred C--cceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHHhhhccCCCHHHHHHHHhhhcc
Q 043039 328 S--TCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIGSLLRFKKAREEWQSILDSEIW 405 (949)
Q Consensus 328 ~--~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~l~~~~~ 405 (949)
. ...+++++++.++..+++.+.+...+.. ...+.+..|++.|+|.|-.+..+...+. .|....... .
T Consensus 169 sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~----~~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~~-~ 237 (328)
T PRK00080 169 DRFGIVQRLEFYTVEELEKIVKRSARILGVE----IDEEGALEIARRSRGTPRIANRLLRRVR------DFAQVKGDG-V 237 (328)
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHHHcCCC----cCHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCCC-C
Confidence 1 2468999999999999999887654322 2245678899999999965544443221 222211110 0
Q ss_pred chhhhccchHHHHHhccCCCChhHHHHHh-hhcccCCCcccChhhHHHHHHHcCccccCCChhhhhHHHHHHHHHHH-HH
Q 043039 406 QVEEFEKNLLPALLLSYNDLPNEIKRCFS-YCAVLPKECYVDRDELIKLWMAQGYIDQKGNKEMEMEMEMVGERYFD-LL 483 (949)
Q Consensus 406 ~~~~~~~~i~~~l~~sy~~L~~~~k~cf~-~~a~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~~~~l~-~L 483 (949)
-....-......+...+..|++..+.-+. ....|+.+ .+..+.+-... ... ...++..++ .|
T Consensus 238 I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g~~---------~~~~~~~~e~~L 301 (328)
T PRK00080 238 ITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------GEE---------RDTIEDVYEPYL 301 (328)
T ss_pred CCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------CCC---------cchHHHHhhHHH
Confidence 00111223445667788889887777664 55666654 34433322111 111 223344455 67
Q ss_pred HhccCcccc
Q 043039 484 AKRSFFQEF 492 (949)
Q Consensus 484 ~~~sll~~~ 492 (949)
++.+|++..
T Consensus 302 i~~~li~~~ 310 (328)
T PRK00080 302 IQQGFIQRT 310 (328)
T ss_pred HHcCCcccC
Confidence 888888643
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.10 E-value=4.5e-12 Score=135.06 Aligned_cols=196 Identities=24% Similarity=0.353 Sum_probs=157.0
Q ss_pred cCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccchhhcCCCCCcE
Q 043039 561 FNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPETFCELFNLQN 640 (949)
Q Consensus 561 ~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L~~ 640 (949)
..+..-...+++.|.+..+|..+..|..|..|.|+.|. +..+|..+++|..|+||+|+.|+++.+|..+|.|+ |+.
T Consensus 72 ~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~---~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNC---IRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKV 147 (722)
T ss_pred ccccchhhhhccccccccCchHHHHHHHHHHHHHHhcc---ceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-cee
Confidence 44556677889999999999989999999999999988 88999999999999999999999999999999987 999
Q ss_pred EeecCCCCCCccccccccCCCCCeeeCCCcccccCCcCCCCCCCCcccCccceecCCCccCCCccCcccccccccCCCce
Q 043039 641 LDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSL 720 (949)
Q Consensus 641 L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l 720 (949)
|-+++|+ +..+|..++.+..|.+|+.++|.+..+|..++.+.+|+.|.+.. +. +..+.
T Consensus 148 li~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR----n~--------------l~~lp--- 205 (722)
T KOG0532|consen 148 LIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR----NH--------------LEDLP--- 205 (722)
T ss_pred EEEecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh----hh--------------hhhCC---
Confidence 9999987 99999999999999999999999999999999999999997433 11 00010
Q ss_pred EEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhh---
Q 043039 721 KIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWIL--- 797 (949)
Q Consensus 721 ~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~--- 797 (949)
..+. .-.|..|++++|++.. +|-.|..++.|++|.|.+|.+.. -|..++
T Consensus 206 ----------------~El~-~LpLi~lDfScNkis~----------iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kG 257 (722)
T KOG0532|consen 206 ----------------EELC-SLPLIRLDFSCNKISY----------LPVDFRKMRHLQVLQLENNPLQS-PPAQICEKG 257 (722)
T ss_pred ----------------HHHh-CCceeeeecccCceee----------cchhhhhhhhheeeeeccCCCCC-ChHHHHhcc
Confidence 0111 2367788888888764 56778888889999998888876 455554
Q ss_pred cccCCcEEEEecc
Q 043039 798 SLNKLRMLCLSFC 810 (949)
Q Consensus 798 ~l~~L~~L~L~~~ 810 (949)
...-.++|+..-|
T Consensus 258 kVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 258 KVHIFKYLSTQAC 270 (722)
T ss_pred ceeeeeeecchhc
Confidence 2233455666666
No 33
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.09 E-value=4.4e-09 Score=113.43 Aligned_cols=275 Identities=16% Similarity=0.135 Sum_probs=141.2
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAII 253 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 253 (949)
.+|+|+++.+++|..++..... .......+.++|++|+|||+||+.+.+... ..+ ..+........ ..+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~--~~~---~~~~~~~~~~~-~~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEMG--VNL---KITSGPALEKP-GDLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CCE---EEeccchhcCc-hhHHHHH
Confidence 3699999999999998864321 123345678999999999999999988632 222 11221111111 1122222
Q ss_pred HhcCCCC----CCCcc-hHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccchhhHhhhc-
Q 043039 254 ENLDGYT----PDLGE-LNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKETVARMIG- 327 (949)
Q Consensus 254 ~~l~~~~----~~~~~-~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~- 327 (949)
..+.... ++... .....+.+...+.+.+..+|+|+..+.. .+ .. ...+.+-|..||+...+...+.
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~---~~---~~~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSAR--SV---RL---DLPPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcccc--ce---ee---cCCCeEEEEecCCccccCHHHHh
Confidence 2222110 00000 0111222333334444445555443221 00 00 1112444555666544433221
Q ss_pred -CcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHHhhhccCCCHHHHHHH--Hhhhc
Q 043039 328 -STCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIGSLLRFKKAREEWQSI--LDSEI 404 (949)
Q Consensus 328 -~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~--l~~~~ 404 (949)
....+.+++++.++..+++.+.+...+.. ...+....|++.|+|.|-.+..++..+ |... ....
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~----~~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~- 215 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVE----IEPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQK- 215 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCC----cCHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCC-
Confidence 13467899999999999999887643321 224566789999999997665444432 1111 0100
Q ss_pred cchhhhccchHHHHHhccCCCChhHHHHHh-hhcccCCCcccChhhHHHHHHHcCccccCCChhhhhHHHHHHHHHHH-H
Q 043039 405 WQVEEFEKNLLPALLLSYNDLPNEIKRCFS-YCAVLPKECYVDRDELIKLWMAQGYIDQKGNKEMEMEMEMVGERYFD-L 482 (949)
Q Consensus 405 ~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~-~~a~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~~~~l~-~ 482 (949)
.-....-......+...|..+++..+.-+. .++.+..+ .+....+-... |. . ...+...++ .
T Consensus 216 ~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~---~---------~~~~~~~~e~~ 279 (305)
T TIGR00635 216 IINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE---D---------ADTIEDVYEPY 279 (305)
T ss_pred CcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC---C---------cchHHHhhhHH
Confidence 000111122333366778889888777665 44555433 33332222111 11 0 233456667 6
Q ss_pred HHhccCcccc
Q 043039 483 LAKRSFFQEF 492 (949)
Q Consensus 483 L~~~sll~~~ 492 (949)
|++.++++..
T Consensus 280 Li~~~li~~~ 289 (305)
T TIGR00635 280 LLQIGFLQRT 289 (305)
T ss_pred HHHcCCcccC
Confidence 9999999643
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.07 E-value=2e-11 Score=133.38 Aligned_cols=129 Identities=17% Similarity=0.108 Sum_probs=66.9
Q ss_pred ceEEEEEeccCC-----CCcccccCCCCceEEEecCCCCCC-------cchhhccCCceeEEEeCCcccccccccccccc
Q 043039 543 LRHSILVLHYNA-----SFPVSIFNAKKLRSLLIQGYSLQH-------MPSFFDQLTCLRALRIGKYGDDAIERIPNGIE 610 (949)
Q Consensus 543 ~r~l~l~~~~~~-----~l~~~~~~~~~Lr~L~l~~~~l~~-------l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~ 610 (949)
++.+.+..+... .++..+...+.++.|.++++.+.. ++..+..+++|+.|++++|.. ....+..+.
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~~~~~~~~~ 102 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL--GPDGCGVLE 102 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC--ChhHHHHHH
Confidence 555555554432 123344455666666666665441 223455566677777766652 112223333
Q ss_pred CCC---CCCeeeecccCCc-----ccchhhcCC-CCCcEEeecCCCCCC----ccccccccCCCCCeeeCCCcccc
Q 043039 611 KLI---HLRYLKLFFVGIE-----ELPETFCEL-FNLQNLDLRRCSKFK----RLPQNIGKLVNLRHLIFDEDDLD 673 (949)
Q Consensus 611 ~l~---~L~~L~L~~~~i~-----~lp~~l~~L-~~L~~L~L~~~~~l~----~lp~~i~~L~~L~~L~l~~~~l~ 673 (949)
.+. +|++|++++|.+. .++..+..+ ++|+.|++++|.... .++..+..+.+|++|++++|.++
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 333 3777777766654 223344555 666777777666321 23334455556666665555443
No 35
>PF05729 NACHT: NACHT domain
Probab=99.05 E-value=1.4e-09 Score=105.89 Aligned_cols=144 Identities=19% Similarity=0.290 Sum_probs=90.5
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccc----cceEEEEEeCCCCCHH---HHHHHHHHhcCCCCCCCcchHHHHHHHH
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNN----FNVMIWVCVSDPFDVF---RVWKAIIENLDGYTPDLGELNTLHQLIN 274 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 274 (949)
|++.|+|.+|+||||+++.++.+...... +..++|+..+...... .+...+..+..... .........+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~~~~- 76 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEELLQEL- 76 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHHHHHHH-
Confidence 48899999999999999998876332222 4567777776544432 33333333333211 1111111111
Q ss_pred hhhCCceEEEEEeCCCCCCcc-------cHHH-HHHhhhc-cCCCcEEEEEccchhh---HhhhcCcceEeCCCCChHhH
Q 043039 275 NRIGGKKVLLVLDDVWTEDGN-------KWES-FQRCLIN-AHRGSKILVTTRKETV---ARMIGSTCVISIEELSEPEC 342 (949)
Q Consensus 275 ~~l~~~~~LlVlDdv~~~~~~-------~~~~-l~~~l~~-~~~gs~iivTtr~~~v---~~~~~~~~~~~l~~l~~~~~ 342 (949)
.-+.++++||+|++++.... .+.. +...+.. ..+++++|||+|.... .........+.+.+|++++.
T Consensus 77 -~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 77 -LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred -HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 12578999999999764321 1222 2233333 3578999999999666 33344456899999999999
Q ss_pred HHHHHHHh
Q 043039 343 WSLFKRFA 350 (949)
Q Consensus 343 ~~l~~~~~ 350 (949)
.+++.++.
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99998764
No 36
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.87 E-value=1.3e-10 Score=119.89 Aligned_cols=313 Identities=16% Similarity=0.166 Sum_probs=188.7
Q ss_pred ceeEEEeCCccccccccccccccCCCCCCeeeecccC-Cc--ccchhhcCCCCCcEEeecCCCCCCccc--cccccCCCC
Q 043039 588 CLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVG-IE--ELPETFCELFNLQNLDLRRCSKFKRLP--QNIGKLVNL 662 (949)
Q Consensus 588 ~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~-i~--~lp~~l~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L 662 (949)
.||.|.+.++.......+-.....+++++.|++.+|. ++ .+-.--..+++|++|++..|..+.... .....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 5888889888754444554556678888888888876 32 111222357788888888887665421 123456777
Q ss_pred CeeeCCC-cccccCCcCCCCCCCCcccCccceecCCCccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccC
Q 043039 663 RHLIFDE-DDLDYMPKGMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEK 741 (949)
Q Consensus 663 ~~L~l~~-~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~ 741 (949)
.+|+++. ..++. .+++.+ ..+++.+.. +...+|...... +....-..
T Consensus 219 ~~lNlSwc~qi~~--------~gv~~~------------------~rG~~~l~~----~~~kGC~e~~le--~l~~~~~~ 266 (483)
T KOG4341|consen 219 KYLNLSWCPQISG--------NGVQAL------------------QRGCKELEK----LSLKGCLELELE--ALLKAAAY 266 (483)
T ss_pred HHhhhccCchhhc--------CcchHH------------------hccchhhhh----hhhcccccccHH--HHHHHhcc
Confidence 8877443 22222 111111 011111111 111122222111 11111123
Q ss_pred CCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchh--hcccCCcEEEEeccCCCCCCCC-
Q 043039 742 KKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWI--LSLNKLRMLCLSFCKKCEIMPP- 818 (949)
Q Consensus 742 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~--~~l~~L~~L~L~~~~~~~~~~~- 818 (949)
+..+.++++..|...++ ..+...-..+..|+.|..+++...+..+-|- .+.++|+.|-+..|+.......
T Consensus 267 ~~~i~~lnl~~c~~lTD-------~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft 339 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTD-------EDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT 339 (483)
T ss_pred ChHhhccchhhhccccc-------hHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhh
Confidence 44455555555533222 1122233346788999988887654333332 2679999999999986554332
Q ss_pred -C-CCCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceeeeccccccccccc--cccccccccccceeccccCccCcC
Q 043039 819 -L-GKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEWEF--IEENITIMPQLNSLAIRDCSKLKM 894 (949)
Q Consensus 819 -l-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~--~~~~~~~l~~L~~L~l~~c~~l~~ 894 (949)
+ .+.+.|+.+++.+|..+.+. . .......+|.|+.|.+..|...++... ....-..+..|+.|++++||.++.
T Consensus 340 ~l~rn~~~Le~l~~e~~~~~~d~--t-L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d 416 (483)
T KOG4341|consen 340 MLGRNCPHLERLDLEECGLITDG--T-LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD 416 (483)
T ss_pred hhhcCChhhhhhcccccceehhh--h-HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH
Confidence 3 36899999999888754322 1 111223789999999998877665522 112234688899999999998873
Q ss_pred -CCCCCCCCCCcceEEEccCCChhHHhhhhcCCCCCccccCcccccCCccccccC
Q 043039 895 -LPDQVLRSTTLKKLEINDCPILEKSFKEAAGDERSKISCIPIVIIDSRYVQIDR 948 (949)
Q Consensus 895 -lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~ 948 (949)
.-..+..+++|+.+++.+|..+++.-.. +..+|+|+++++.+|+|+.+
T Consensus 417 ~~Le~l~~c~~Leri~l~~~q~vtk~~i~------~~~~~lp~i~v~a~~a~~t~ 465 (483)
T KOG4341|consen 417 ATLEHLSICRNLERIELIDCQDVTKEAIS------RFATHLPNIKVHAYFAPVTP 465 (483)
T ss_pred HHHHHHhhCcccceeeeechhhhhhhhhH------HHHhhCccceehhhccCCCC
Confidence 2234567889999999999998764433 46799999999999999864
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.87 E-value=9e-11 Score=125.31 Aligned_cols=138 Identities=25% Similarity=0.370 Sum_probs=117.4
Q ss_pred EEeccCCCCcccccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcc
Q 043039 548 LVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEE 627 (949)
Q Consensus 548 l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~ 627 (949)
+..+.+-.+|..+.++..|..|+++.|.++.+|..++.|+ |++|.+++|+ ++.+|+.++.+.+|..||.+.|.+..
T Consensus 105 Ly~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk---l~~lp~~ig~~~tl~~ld~s~nei~s 180 (722)
T KOG0532|consen 105 LYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK---LTSLPEEIGLLPTLAHLDVSKNEIQS 180 (722)
T ss_pred HHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc---cccCCcccccchhHHHhhhhhhhhhh
Confidence 3334444557888888899999999999998888777766 8999999988 88899999988999999999999999
Q ss_pred cchhhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccccCCcCCCCCCCCcccCcc
Q 043039 628 LPETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEF 691 (949)
Q Consensus 628 lp~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~ 691 (949)
+|+.+++|.+|+.|+++.|. +..+|..+. .-.|..||++||++..+|..|.+|+.||+|.+-
T Consensus 181 lpsql~~l~slr~l~vrRn~-l~~lp~El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 181 LPSQLGYLTSLRDLNVRRNH-LEDLPEELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLE 242 (722)
T ss_pred chHHhhhHHHHHHHHHhhhh-hhhCCHHHh-CCceeeeecccCceeecchhhhhhhhheeeeec
Confidence 99999999999999999987 888888888 557888999999999999999999999988643
No 38
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.85 E-value=9.1e-08 Score=109.09 Aligned_cols=214 Identities=12% Similarity=0.064 Sum_probs=132.6
Q ss_pred cCccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCccc---cccc--ceEEEEEeCCCCCHHH
Q 043039 173 VSEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADV---SNNF--NVMIWVCVSDPFDVFR 247 (949)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~f--~~~~wv~~~~~~~~~~ 247 (949)
+..+.|||+|+++|...|...-. +.....++.|+|++|+|||+.++.|.+.... .... -.+++|.+..-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 45788999999999999865332 1223367889999999999999999865211 1111 2367888877778888
Q ss_pred HHHHHHHhcCCCCC-CCcchHHHHHHHHhhhC---CceEEEEEeCCCCCCcccHHHHHHhhh-ccCCCcEEEE--Eccch
Q 043039 248 VWKAIIENLDGYTP-DLGELNTLHQLINNRIG---GKKVLLVLDDVWTEDGNKWESFQRCLI-NAHRGSKILV--TTRKE 320 (949)
Q Consensus 248 ~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~---~~~~LlVlDdv~~~~~~~~~~l~~~l~-~~~~gs~iiv--Ttr~~ 320 (949)
++..|.+++....+ ...........+...+. +...+||||+++.-....-+.|...+. ....+++|+| +|...
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 99999998854333 22233334444444432 234699999996532112222333332 1234556555 33221
Q ss_pred --------hhHhhhcCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHHhhhc
Q 043039 321 --------TVARMIGSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIGSLLR 388 (949)
Q Consensus 321 --------~v~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~ 388 (949)
.+...++ ...+...+.+.++-.+++..++......-++..++-+|+.+++..|..-.||.++-.+..
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 1112222 224677999999999999999864333334555666666666666777777777665553
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.83 E-value=2e-09 Score=102.56 Aligned_cols=127 Identities=24% Similarity=0.298 Sum_probs=52.5
Q ss_pred ccCCCCceEEEecCCCCCCcchhhc-cCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccchhh-cCCCC
Q 043039 560 IFNAKKLRSLLIQGYSLQHMPSFFD-QLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPETF-CELFN 637 (949)
Q Consensus 560 ~~~~~~Lr~L~l~~~~l~~l~~~~~-~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l-~~L~~ 637 (949)
..++.+++.|++.+|.++.+.. +. .+.+|++|+|++|. +..++ .+..+++|+.|++++|.|+.++..+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~---I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQ---ITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPN 89 (175)
T ss_dssp ---------------------S---TT-TT--EEE-TTS-----S--T-T----TT--EEE--SS---S-CHHHHHH-TT
T ss_pred cccccccccccccccccccccc-hhhhhcCCCEEECCCCC---Ccccc-CccChhhhhhcccCCCCCCccccchHHhCCc
Confidence 3456678999999999887765 44 57889999999998 77764 4778999999999999999887655 36899
Q ss_pred CcEEeecCCCCCCccc--cccccCCCCCeeeCCCcccccCCc----CCCCCCCCcccCccc
Q 043039 638 LQNLDLRRCSKFKRLP--QNIGKLVNLRHLIFDEDDLDYMPK----GMGSLTGLRTLSEFV 692 (949)
Q Consensus 638 L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~l~~~p~----~i~~l~~L~~L~~~~ 692 (949)
|++|++++|. +..+- ..+..+++|++|++.+|.+...+. -+..+++|+.|+...
T Consensus 90 L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 90 LQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp --EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 9999999887 54443 356788999999999888875542 256788888888544
No 40
>PRK06893 DNA replication initiation factor; Validated
Probab=98.79 E-value=2.2e-07 Score=94.75 Aligned_cols=153 Identities=14% Similarity=0.143 Sum_probs=95.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCce
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKK 281 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 281 (949)
+.+.|+|++|+|||+|++.+++... .....+.|+++.... .... .+.+.++ +.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~--~~~~~~~y~~~~~~~---~~~~---------------------~~~~~~~-~~ 92 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYL--LNQRTAIYIPLSKSQ---YFSP---------------------AVLENLE-QQ 92 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEeeHHHhh---hhhH---------------------HHHhhcc-cC
Confidence 5789999999999999999998632 223345666654210 0000 1111122 23
Q ss_pred EEEEEeCCCCCC-cccHHH-HHHhhhcc-CCCcEEEE-Eccc---------hhhHhhhcCcceEeCCCCChHhHHHHHHH
Q 043039 282 VLLVLDDVWTED-GNKWES-FQRCLINA-HRGSKILV-TTRK---------ETVARMIGSTCVISIEELSEPECWSLFKR 348 (949)
Q Consensus 282 ~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~iiv-Ttr~---------~~v~~~~~~~~~~~l~~l~~~~~~~l~~~ 348 (949)
-+||+||+|... ...|.. +...+... ..|+.+|| |++. +.+...+.....+++++++.++.++++.+
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~ 172 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQR 172 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHH
Confidence 489999998742 234553 44434332 23555655 4443 35555555567899999999999999999
Q ss_pred HhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHHh
Q 043039 349 FAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIGS 385 (949)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 385 (949)
.+...+-. --.++..-|++++.|..-++..+-.
T Consensus 173 ~a~~~~l~----l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 173 NAYQRGIE----LSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHcCCC----CCHHHHHHHHHhccCCHHHHHHHHH
Confidence 88754322 2256677788888877666554443
No 41
>PTZ00202 tuzin; Provisional
Probab=98.76 E-value=1.9e-06 Score=91.41 Aligned_cols=171 Identities=14% Similarity=0.178 Sum_probs=107.0
Q ss_pred ccccccCccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 043039 168 TALINVSEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFR 247 (949)
Q Consensus 168 ~~~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 247 (949)
..+.+.+.|+||++++.++...|...+. ...+++.|+|++|+|||||++.+..... ...++++.. +..+
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~-----~~qL~vNpr---g~eE 324 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG-----MPAVFVDVR---GTED 324 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC-----ceEEEECCC---CHHH
Confidence 3455667899999999999999965432 2346999999999999999999987522 123333333 6799
Q ss_pred HHHHHHHhcCCCCCCC-cc-hHHHHHHHHhh-hC-CceEEEEEeCCCCCCc-ccHHHHHHhhhccCCCcEEEEEccchhh
Q 043039 248 VWKAIIENLDGYTPDL-GE-LNTLHQLINNR-IG-GKKVLLVLDDVWTEDG-NKWESFQRCLINAHRGSKILVTTRKETV 322 (949)
Q Consensus 248 ~~~~i~~~l~~~~~~~-~~-~~~~~~~l~~~-l~-~~~~LlVlDdv~~~~~-~~~~~l~~~l~~~~~gs~iivTtr~~~v 322 (949)
++..++.+|+.+.... .+ .+.+.+.+.+. -. +++.+||+-==+..+. .-+++.. .|.....-|.|++---.+.+
T Consensus 325 lLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evplesl 403 (550)
T PTZ00202 325 TLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESL 403 (550)
T ss_pred HHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhc
Confidence 9999999999743221 11 23333333332 12 6777777764322111 1122221 23444456778876554443
Q ss_pred Hhhh---cCcceEeCCCCChHhHHHHHHHHh
Q 043039 323 ARMI---GSTCVISIEELSEPECWSLFKRFA 350 (949)
Q Consensus 323 ~~~~---~~~~~~~l~~l~~~~~~~l~~~~~ 350 (949)
.-.. ..-..|-+.+++.++|.++-.+..
T Consensus 404 t~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 404 TIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred chhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 2211 124578899999999998877654
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.73 E-value=8e-09 Score=116.12 Aligned_cols=199 Identities=31% Similarity=0.330 Sum_probs=133.8
Q ss_pred eEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCC-CCCeeeecccCCcccchhhcCCCCCcEEeecC
Q 043039 567 RSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLI-HLRYLKLFFVGIEELPETFCELFNLQNLDLRR 645 (949)
Q Consensus 567 r~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~-~L~~L~L~~~~i~~lp~~l~~L~~L~~L~L~~ 645 (949)
..+.+..+.+......+..++.+..|++.++. +..+|...+.+. +|+.|++++|.+..+|..+..+++|+.|+++.
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~---i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 96 PSLDLNLNRLRSNISELLELTNLTSLDLDNNN---ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred ceeeccccccccCchhhhcccceeEEecCCcc---cccCccccccchhhcccccccccchhhhhhhhhccccccccccCC
Confidence 35667776663333335566788888888888 888888777774 89999999999888888888899999999998
Q ss_pred CCCCCccccccccCCCCCeeeCCCcccccCCcCCCCCCCCcccCccceecCCCccCCCccCcccccccccCCCceEEccC
Q 043039 646 CSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKIRGL 725 (949)
Q Consensus 646 ~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~ 725 (949)
|. +..+|...+.+++|+.|++++|.+..+|..+..+..|+.|.+.. +.. ...+.
T Consensus 173 N~-l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~----N~~----~~~~~----------------- 226 (394)
T COG4886 173 ND-LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSN----NSI----IELLS----------------- 226 (394)
T ss_pred ch-hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcC----Ccc----eecch-----------------
Confidence 88 88888877788889999988888888887776666677776433 110 00000
Q ss_pred CCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhhcccCCcEE
Q 043039 726 GNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWILSLNKLRML 805 (949)
Q Consensus 726 ~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L 805 (949)
.+..++++..|.+..+.... .+..+..+++++.|++++|.+.. ++. ++.+.+|+.|
T Consensus 227 ------------~~~~~~~l~~l~l~~n~~~~----------~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L 282 (394)
T COG4886 227 ------------SLSNLKNLSGLELSNNKLED----------LPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLREL 282 (394)
T ss_pred ------------hhhhcccccccccCCceeee----------ccchhccccccceeccccccccc-ccc-ccccCccCEE
Confidence 11222333333333333221 13344556667777777777666 554 6677777777
Q ss_pred EEeccCCCCCCCC
Q 043039 806 CLSFCKKCEIMPP 818 (949)
Q Consensus 806 ~L~~~~~~~~~~~ 818 (949)
+++++.....++.
T Consensus 283 ~~s~n~~~~~~~~ 295 (394)
T COG4886 283 DLSGNSLSNALPL 295 (394)
T ss_pred eccCccccccchh
Confidence 7777766655554
No 43
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.70 E-value=3.5e-07 Score=102.28 Aligned_cols=177 Identities=18% Similarity=0.222 Sum_probs=105.3
Q ss_pred CccccchhHHHH---HHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHH
Q 043039 174 SEVCGRNEEKNA---LKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWK 250 (949)
Q Consensus 174 ~~~~Gr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 250 (949)
.+++|++..+.. +..++... ..+.+.++|++|+||||+|+.+++.. ...| +.++....-.+.++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~~--~~~~-----~~l~a~~~~~~~ir 78 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGAT--DAPF-----EALSAVTSGVKDLR 78 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHHh--CCCE-----EEEecccccHHHHH
Confidence 358888877665 77777432 34567889999999999999998852 2222 22221111111111
Q ss_pred HHHHhcCCCCCCCcchHHHHHHHHhh-hCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEE--ccchh--hHhh
Q 043039 251 AIIENLDGYTPDLGELNTLHQLINNR-IGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVT--TRKET--VARM 325 (949)
Q Consensus 251 ~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT--tr~~~--v~~~ 325 (949)
. +.+..... ..+++.+|++|+++.......+.+...+.. |..++|. |.+.. +...
T Consensus 79 ~-----------------ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 79 E-----------------VIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPA 138 (413)
T ss_pred H-----------------HHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHH
Confidence 1 22222111 245788999999987655555556555433 4555553 33322 1111
Q ss_pred -hcCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHH
Q 043039 326 -IGSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIG 384 (949)
Q Consensus 326 -~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 384 (949)
......+.+.+++.++...++.+.+....... .....+..+.|++.|+|.|..+..+.
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 12246899999999999999988653311100 02234567788899999987665443
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=4.5e-09 Score=109.24 Aligned_cols=209 Identities=18% Similarity=0.177 Sum_probs=134.1
Q ss_pred CCceEEEEEeccCCCCc--ccccCCCCceEEEecCCCCCC---cchhhccCCceeEEEeCCcccccccccccc--ccCCC
Q 043039 541 EKLRHSILVLHYNASFP--VSIFNAKKLRSLLIQGYSLQH---MPSFFDQLTCLRALRIGKYGDDAIERIPNG--IEKLI 613 (949)
Q Consensus 541 ~~~r~l~l~~~~~~~l~--~~~~~~~~Lr~L~l~~~~l~~---l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~--i~~l~ 613 (949)
.++|.+++.+......+ .....|++++.|+|+.|-+.. +..+...+++|+.|+|+.|. +....++ -..++
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr---l~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR---LSNFISSNTTLLLS 197 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc---ccCCccccchhhhh
Confidence 56677777666554433 356789999999999997653 44567889999999999887 3222221 33688
Q ss_pred CCCeeeecccCCc--ccchhhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccccCCc--CCCCCCCCcccC
Q 043039 614 HLRYLKLFFVGIE--ELPETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPK--GMGSLTGLRTLS 689 (949)
Q Consensus 614 ~L~~L~L~~~~i~--~lp~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~--~i~~l~~L~~L~ 689 (949)
+|+.|.|+.|+++ .+-..+..+++|+.|+|..|..+..--....-++.|+.|++++|++-.++. .++.++.|..|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 9999999999987 344445578899999999985333333344557789999999988887773 467777777776
Q ss_pred ccceecCCCccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHh
Q 043039 690 EFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAII 769 (949)
Q Consensus 690 ~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 769 (949)
+.. .+ ...+...+.........+++|+.|.+..|++.+. ..+
T Consensus 278 ls~----tg--------------------------i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w--------~sl 319 (505)
T KOG3207|consen 278 LSS----TG--------------------------IASIAEPDVESLDKTHTFPKLEYLNISENNIRDW--------RSL 319 (505)
T ss_pred ccc----cC--------------------------cchhcCCCccchhhhcccccceeeecccCccccc--------ccc
Confidence 432 21 0011111111111234567788888887776432 123
Q ss_pred hcCCCCCCcCceEEeccccCC
Q 043039 770 EALRPHPNLESLQISFYEVKA 790 (949)
Q Consensus 770 ~~l~~~~~L~~L~L~~~~~~~ 790 (949)
..+..+++|+.|.+.++.+..
T Consensus 320 ~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 320 NHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred chhhccchhhhhhcccccccc
Confidence 344555677777766666553
No 45
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.68 E-value=1.9e-08 Score=95.87 Aligned_cols=120 Identities=24% Similarity=0.238 Sum_probs=53.9
Q ss_pred CCceEEEEEeccCCCCccccc-CCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccc-cCCCCCCee
Q 043039 541 EKLRHSILVLHYNASFPVSIF-NAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGI-EKLIHLRYL 618 (949)
Q Consensus 541 ~~~r~l~l~~~~~~~l~~~~~-~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i-~~l~~L~~L 618 (949)
.+.+.+.+.++.+..+. .+. .+.+|+.|++++|.++.++. +..++.|+.|++++|. +..++..+ ..+++|+.|
T Consensus 19 ~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~---I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNR---ISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S--TT-----TT--EEE--SS------S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccc-chhhhhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCC---CCccccchHHhCCcCCEE
Confidence 45688888888877643 444 57899999999999999876 8889999999999999 77776555 469999999
Q ss_pred eecccCCcccc--hhhcCCCCCcEEeecCCCCCCcccc----ccccCCCCCeee
Q 043039 619 KLFFVGIEELP--ETFCELFNLQNLDLRRCSKFKRLPQ----NIGKLVNLRHLI 666 (949)
Q Consensus 619 ~L~~~~i~~lp--~~l~~L~~L~~L~L~~~~~l~~lp~----~i~~L~~L~~L~ 666 (949)
++++|.|..+- ..+..+++|++|+|.+|+ +...+. .+..+++|+.||
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEET
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeC
Confidence 99999988653 567789999999999998 544442 468899999998
No 46
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.68 E-value=7.2e-07 Score=107.51 Aligned_cols=257 Identities=15% Similarity=0.167 Sum_probs=153.9
Q ss_pred cccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEE---EEEeCCCC---CHHHHH
Q 043039 176 VCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMI---WVCVSDPF---DVFRVW 249 (949)
Q Consensus 176 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~---wv~~~~~~---~~~~~~ 249 (949)
++||+.+++.|...+..... +...++.+.|..|||||+|+++|... +.+.+...+ +-....+. .....+
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q~~~~ipl~~lvq~~ 76 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQFERNIPLSPLVQAF 76 (849)
T ss_pred CCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhcccccCCCchHHHHHHH
Confidence 78999999999999976543 45569999999999999999999874 222211111 11111221 223344
Q ss_pred HHHHHhcCCCCCC-----------------------------------------CcchHH-----HHHHHHhhh-CCceE
Q 043039 250 KAIIENLDGYTPD-----------------------------------------LGELNT-----LHQLINNRI-GGKKV 282 (949)
Q Consensus 250 ~~i~~~l~~~~~~-----------------------------------------~~~~~~-----~~~~l~~~l-~~~~~ 282 (949)
++++.++...... ...... ....+.... +.++.
T Consensus 77 r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~pl 156 (849)
T COG3899 77 RDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPL 156 (849)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCe
Confidence 4444443111000 000000 111222222 35699
Q ss_pred EEEEeCCCCCCcccHHHHHHhhhccC------CCcEEEEEccch--hhHhhhcCcceEeCCCCChHhHHHHHHHHhhccC
Q 043039 283 LLVLDDVWTEDGNKWESFQRCLINAH------RGSKILVTTRKE--TVARMIGSTCVISIEELSEPECWSLFKRFAFLNR 354 (949)
Q Consensus 283 LlVlDdv~~~~~~~~~~l~~~l~~~~------~gs~iivTtr~~--~v~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~ 354 (949)
++|+||+...|.....-+........ +..-.+.|.+.. .+...-.....+.+.||+..+...+........
T Consensus 157 Vi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~- 235 (849)
T COG3899 157 VIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT- 235 (849)
T ss_pred EEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc-
Confidence 99999996666555554444333322 111122333332 111222334689999999999999998876432
Q ss_pred CCCCchhHHHHHHHHHHhcCCCchHHHHHHhhhccC------CCHHHHHHHHhhhccchhhhccchHHHHHhccCCCChh
Q 043039 355 SRSDCKQLEEIGRKITWKCKGLPLAVKTIGSLLRFK------KAREEWQSILDSEIWQVEEFEKNLLPALLLSYNDLPNE 428 (949)
Q Consensus 355 ~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~------~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~ 428 (949)
.....+..+.|+++..|+|+.+..+-..+... .+...|..-... .......++ +...+..-.+.||..
T Consensus 236 ----~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~~~~~~~~-vv~~l~~rl~kL~~~ 309 (849)
T COG3899 236 ----KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LGILATTDA-VVEFLAARLQKLPGT 309 (849)
T ss_pred ----ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cCCchhhHH-HHHHHHHHHhcCCHH
Confidence 22335677889999999999999988887643 223344332211 111222223 666788999999999
Q ss_pred HHHHHhhhcccCCCcc
Q 043039 429 IKRCFSYCAVLPKECY 444 (949)
Q Consensus 429 ~k~cf~~~a~fp~~~~ 444 (949)
.|..+...|++...+.
T Consensus 310 t~~Vl~~AA~iG~~F~ 325 (849)
T COG3899 310 TREVLKAAACIGNRFD 325 (849)
T ss_pred HHHHHHHHHHhCccCC
Confidence 9999999999987654
No 47
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.67 E-value=6.2e-07 Score=92.14 Aligned_cols=171 Identities=17% Similarity=0.145 Sum_probs=103.0
Q ss_pred chhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCC
Q 043039 179 RNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDG 258 (949)
Q Consensus 179 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 258 (949)
.+..++.+..++.. ...+.+.|+|++|+|||+||+.+++... ......++++++.-.+. ...
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~~--~~~~~~~~i~~~~~~~~---~~~------- 83 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAAE--ERGKSAIYLPLAELAQA---DPE------- 83 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEeHHHHHHh---HHH-------
Confidence 45577888877642 2346889999999999999999987532 22334566665432110 000
Q ss_pred CCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcc-c-HHHHHHhhhc-cCCCcEEEEEccchh---------hHhhh
Q 043039 259 YTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGN-K-WESFQRCLIN-AHRGSKILVTTRKET---------VARMI 326 (949)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~-~-~~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~ 326 (949)
+...+++ .-+||+||++..... . ...+...+.. ...+.++|+||+... +...+
T Consensus 84 --------------~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 84 --------------VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred --------------HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 1111222 238999999765332 2 3345544433 123457999888532 12222
Q ss_pred cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHHhh
Q 043039 327 GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIGSL 386 (949)
Q Consensus 327 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 386 (949)
.....+++.+++.++...++...+-..... --.+..+.|++.+.|.|..+..+-..
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~----~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGLQ----LPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 224579999999999999998765332221 22455577777899998877766433
No 48
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.66 E-value=1.5e-06 Score=99.09 Aligned_cols=184 Identities=14% Similarity=0.157 Sum_probs=117.0
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccc-------------------cccceE
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVS-------------------NNFNVM 234 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~ 234 (949)
.+++|.+..++.|.+++.... -.+.+.++|..|+||||+|+.+.+...-. +.|..+
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 468999999999999986532 34677799999999999998776542110 112123
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHh-hhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEE
Q 043039 235 IWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINN-RIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKI 313 (949)
Q Consensus 235 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 313 (949)
++++.+....+. +...+.+.... -..++.-++|||+++......++.+...+..-....++
T Consensus 91 iEIDAas~rgVD------------------dIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~F 152 (830)
T PRK07003 91 VEMDAASNRGVD------------------EMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKF 152 (830)
T ss_pred EEecccccccHH------------------HHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEE
Confidence 333332221111 11111211111 11244558999999887767788888888776667888
Q ss_pred EEEccchh-hHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCc-hHHHHHH
Q 043039 314 LVTTRKET-VARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLP-LAVKTIG 384 (949)
Q Consensus 314 ivTtr~~~-v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~ 384 (949)
|+||++.. +...+ .....++++.++.++..+.+.+.+..++.. ...+..+.|++.++|.. -|+..+-
T Consensus 153 ILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~----id~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 153 ILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA----FEPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred EEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 88887743 33222 235689999999999999998876543321 22455677888898865 4555433
No 49
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=1.3e-06 Score=95.82 Aligned_cols=180 Identities=16% Similarity=0.202 Sum_probs=112.3
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCccccc-------------------ccceE
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSN-------------------NFNVM 234 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~ 234 (949)
.+++|.+..++.+.+.+.... -.+.+.++|+.|+||||+|+.+.+...-.. .+...
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 468999999999999886432 346789999999999999999876421000 01111
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhh-hCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEE
Q 043039 235 IWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNR-IGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKI 313 (949)
Q Consensus 235 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 313 (949)
.++..+....+ .+...+.+.+... ..+++-++|+|+++......++.+...+.......++
T Consensus 91 ~~~~~~~~~~v------------------~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~f 152 (363)
T PRK14961 91 IEIDAASRTKV------------------EEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKF 152 (363)
T ss_pred EEecccccCCH------------------HHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 22221111111 1111222211111 1244569999999877656677888877766667777
Q ss_pred EEEccch-hhHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHH
Q 043039 314 LVTTRKE-TVARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAV 380 (949)
Q Consensus 314 ivTtr~~-~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 380 (949)
|++|.+. .+...+ +....+++.+++.++..+.+...+...+.. -..+.+..|++.++|.|-.+
T Consensus 153 Il~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~----i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 153 ILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESID----TDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred EEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 7777553 333332 224689999999999999888876443321 12455677888999988543
No 50
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.64 E-value=2.4e-07 Score=96.36 Aligned_cols=153 Identities=22% Similarity=0.283 Sum_probs=93.0
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHH-Hhhh
Q 043039 199 NAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLI-NNRI 277 (949)
Q Consensus 199 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l 277 (949)
+.+.-..+||++|+||||||+.+... ....|. .++...+- ..++..+.+.- +...
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f~-----~~sAv~~g-----------------vkdlr~i~e~a~~~~~ 101 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGT--TNAAFE-----ALSAVTSG-----------------VKDLREIIEEARKNRL 101 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHh--hCCceE-----Eecccccc-----------------HHHHHHHHHHHHHHHh
Confidence 35677889999999999999999885 333442 22222221 22333333333 2334
Q ss_pred CCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEE--EccchhhH--hh-hcCcceEeCCCCChHhHHHHHHHHhhc
Q 043039 278 GGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILV--TTRKETVA--RM-IGSTCVISIEELSEPECWSLFKRFAFL 352 (949)
Q Consensus 278 ~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v~--~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~ 352 (949)
.+++.+|++|.|..-+-.+.+.+ ||..-+|.-|+| ||.++... .. .....++.+++|+.++..+++.+.+..
T Consensus 102 ~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~ 178 (436)
T COG2256 102 LGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLD 178 (436)
T ss_pred cCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhh
Confidence 58999999999976443444333 455566877777 66654322 11 234679999999999999999884432
Q ss_pred cCCCCC---chhHHHHHHHHHHhcCCCch
Q 043039 353 NRSRSD---CKQLEEIGRKITWKCKGLPL 378 (949)
Q Consensus 353 ~~~~~~---~~~~~~~~~~i~~~~~g~Pl 378 (949)
....-. ..-.+++...++..++|=--
T Consensus 179 ~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 179 EERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred hhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 221111 11224455667777777543
No 51
>PRK04195 replication factor C large subunit; Provisional
Probab=98.63 E-value=3.4e-06 Score=96.33 Aligned_cols=248 Identities=17% Similarity=0.177 Sum_probs=140.6
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAII 253 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 253 (949)
.+++|+++.++++.+|+..... +...+.+.|+|++|+||||+|+.++++.. |+ ++-+++++..+.. ....++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~-~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTAD-VIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHH-HHHHHH
Confidence 4699999999999999975432 12267899999999999999999998631 22 3334444432222 222222
Q ss_pred HhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCc----ccHHHHHHhhhccCCCcEEEEEccchh-hHh-hh-
Q 043039 254 ENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDG----NKWESFQRCLINAHRGSKILVTTRKET-VAR-MI- 326 (949)
Q Consensus 254 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~-~~- 326 (949)
....... .....++-+||+|+++.... ..+..+...+.. .+..||+|+.+.. ... .+
T Consensus 86 ~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 86 GEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHh
Confidence 2211100 00113577999999976432 335556655543 2344666665421 111 11
Q ss_pred cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHHhhhccCC---CHHHHHHHHhhh
Q 043039 327 GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIGSLLRFKK---AREEWQSILDSE 403 (949)
Q Consensus 327 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~---~~~~w~~~l~~~ 403 (949)
.....+.+.+++.++....+.+.+...+...+ .++...|++.++|-.-.+......+..+. +.+....+..
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~-- 223 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGIECD----DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR-- 223 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc--
Confidence 23467899999999999988887754433222 45667888889887665543333332221 2333332221
Q ss_pred ccchhhhccchHHHHHhccC-CCChhHHHHHhhhcccCCCcccChhhHHHHHHHcCccccC
Q 043039 404 IWQVEEFEKNLLPALLLSYN-DLPNEIKRCFSYCAVLPKECYVDRDELIKLWMAQGYIDQK 463 (949)
Q Consensus 404 ~~~~~~~~~~i~~~l~~sy~-~L~~~~k~cf~~~a~fp~~~~i~~~~li~~w~aeg~i~~~ 463 (949)
.+...+++.++..-+. .-+......+..+ .++. ..+-.|+.|.++...
T Consensus 224 ----~d~~~~if~~l~~i~~~k~~~~a~~~~~~~-------~~~~-~~i~~~l~en~~~~~ 272 (482)
T PRK04195 224 ----RDREESIFDALDAVFKARNADQALEASYDV-------DEDP-DDLIEWIDENIPKEY 272 (482)
T ss_pred ----CCCCCCHHHHHHHHHCCCCHHHHHHHHHcc-------cCCH-HHHHHHHHhcccccc
Confidence 1223456666665554 2222333322211 2233 346789999997754
No 52
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.62 E-value=6.2e-08 Score=89.95 Aligned_cols=118 Identities=20% Similarity=0.230 Sum_probs=79.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccc---cccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhh
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVS---NNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNR 276 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 276 (949)
+.+++.|+|.+|+|||++++++.++.... ..-..++|+.+....+...+...|+.+++...........+.+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34689999999999999999998752110 003456799998888999999999999997766645666666777777
Q ss_pred hCCc-eEEEEEeCCCCC-CcccHHHHHHhhhccCCCcEEEEEccc
Q 043039 277 IGGK-KVLLVLDDVWTE-DGNKWESFQRCLINAHRGSKILVTTRK 319 (949)
Q Consensus 277 l~~~-~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~ 319 (949)
+... ..+||+|+++.- ....++.+.... + ..+.+||+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~-~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLL-N-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHT-C-SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHH-h-CCCCeEEEEECh
Confidence 7644 469999999654 333334443322 2 566778887765
No 53
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.61 E-value=6.7e-09 Score=102.24 Aligned_cols=127 Identities=21% Similarity=0.234 Sum_probs=105.7
Q ss_pred ccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccchhhcCCCCCc
Q 043039 560 IFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPETFCELFNLQ 639 (949)
Q Consensus 560 ~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L~ 639 (949)
+..++.|.+|++++|.++.+....+-.+.+|+|+++.|. +..+-+ +..|++|..|||++|.++++-..=.+|-|.+
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~---i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR---IRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIK 355 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccc---eeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEe
Confidence 445678899999999999988888888999999999998 655543 7889999999999999887765556788999
Q ss_pred EEeecCCCCCCccccccccCCCCCeeeCCCcccccCC--cCCCCCCCCcccCccc
Q 043039 640 NLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMP--KGMGSLTGLRTLSEFV 692 (949)
Q Consensus 640 ~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p--~~i~~l~~L~~L~~~~ 692 (949)
+|.|.+|. ++.+ +.+++|-+|..||+.+|+|..+. .+||+|++|++|.+..
T Consensus 356 tL~La~N~-iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 356 TLKLAQNK-IETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred eeehhhhh-Hhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcC
Confidence 99999987 6666 47889999999999999988664 5799999999987554
No 54
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=1.6e-06 Score=100.95 Aligned_cols=183 Identities=15% Similarity=0.199 Sum_probs=117.3
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCccccc-------------------ccceE
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSN-------------------NFNVM 234 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~ 234 (949)
.+++|.+..++.|.+++.... -.+.+.++|+.|+||||+|+.+.+...-.. .|.-+
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 468999999999999986532 245678999999999999999987521110 01112
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHh-hhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEE
Q 043039 235 IWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINN-RIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKI 313 (949)
Q Consensus 235 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 313 (949)
+++.......+ .+.+.+...+.. ...+++-++|||++.......++.+...+.......++
T Consensus 91 iEidAas~~kV------------------DdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 91 IEVDAASRTKV------------------DDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred EEeccccccCH------------------HHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 22222111111 122222222221 12466779999999888777888888888766666777
Q ss_pred EEEccc-hhhHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHH
Q 043039 314 LVTTRK-ETVARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTI 383 (949)
Q Consensus 314 ivTtr~-~~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 383 (949)
|++|.+ ..+...+ .....+++++++.++...++.+.+...+. ....+....|++.++|.|--+..+
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI----~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL----PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 776655 3343332 23578999999999999999887643221 122456778899999988644433
No 55
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.57 E-value=2e-06 Score=94.42 Aligned_cols=198 Identities=13% Similarity=0.129 Sum_probs=111.3
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCccccccc-ceEEEEEeCCCCCH-HHHHH-
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNF-NVMIWVCVSDPFDV-FRVWK- 250 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~-~~~~~- 250 (949)
..++|++..++.+..++... ..+.+.++|++|+||||+|+.+.+...- ..+ ...+.+++++-.+. ...+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELYG-DPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhcC-cccccceEEechhhhhhcchhhhhc
Confidence 46899999999999988543 2345789999999999999998775211 111 12344444321100 00000
Q ss_pred --HHHHhcCCC-CCCCcchHHHHHHHH---hhh--CCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccchh-
Q 043039 251 --AIIENLDGY-TPDLGELNTLHQLIN---NRI--GGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKET- 321 (949)
Q Consensus 251 --~i~~~l~~~-~~~~~~~~~~~~~l~---~~l--~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~- 321 (949)
.....++.. .......+.....+. ... ...+-+||+||+..........+...+......+++|+||....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 000000000 000001111222221 111 13445899999976544445556666655555677888875432
Q ss_pred hHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHH
Q 043039 322 VARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKT 382 (949)
Q Consensus 322 v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 382 (949)
+...+ .....+++.+++.++...++.+.+...+.. -..+....+++.++|.+-.+..
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~----~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD----YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 22222 224578889999999999998876543322 2255667788888887655543
No 56
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.57 E-value=1.2e-08 Score=103.25 Aligned_cols=238 Identities=19% Similarity=0.181 Sum_probs=123.8
Q ss_pred cccCCCCceEEEecCCCCC-----CcchhhccCCceeEEEeCCcccc-ccccccc-------cccCCCCCCeeeecccCC
Q 043039 559 SIFNAKKLRSLLIQGYSLQ-----HMPSFFDQLTCLRALRIGKYGDD-AIERIPN-------GIEKLIHLRYLKLFFVGI 625 (949)
Q Consensus 559 ~~~~~~~Lr~L~l~~~~l~-----~l~~~~~~l~~Lr~L~L~~~~~~-~~~~lp~-------~i~~l~~L~~L~L~~~~i 625 (949)
.+.....+..++|+||.+. .+...+.+.+.||..++++.... ....+|+ .+-.+++|++||||+|.+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 4456677888999999875 35556777788898888865311 1223343 344667888888888875
Q ss_pred c-----ccchhhcCCCCCcEEeecCCCCCCccc--------------cccccCCCCCeeeCCCcccccCCc-----CCCC
Q 043039 626 E-----ELPETFCELFNLQNLDLRRCSKFKRLP--------------QNIGKLVNLRHLIFDEDDLDYMPK-----GMGS 681 (949)
Q Consensus 626 ~-----~lp~~l~~L~~L~~L~L~~~~~l~~lp--------------~~i~~L~~L~~L~l~~~~l~~~p~-----~i~~ 681 (949)
. .+-.-+..++.|++|.|.+|. +...- +-+.+-++|+++..+.|.+...+. .+..
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS 183 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence 5 122334567778888888776 33111 112334455555555554443221 1222
Q ss_pred CCCCcccCccceecCCCccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchh
Q 043039 682 LTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDED 761 (949)
Q Consensus 682 l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 761 (949)
.+.|+.+.+.. ++ +. -... ......+..|++|+.|+|..|.....
T Consensus 184 ~~~leevr~~q----N~-----------------I~----------~eG~-~al~eal~~~~~LevLdl~DNtft~e--- 228 (382)
T KOG1909|consen 184 HPTLEEVRLSQ----NG-----------------IR----------PEGV-TALAEALEHCPHLEVLDLRDNTFTLE--- 228 (382)
T ss_pred ccccceEEEec----cc-----------------cc----------Cchh-HHHHHHHHhCCcceeeecccchhhhH---
Confidence 22333332111 00 00 0000 12223455666666666666654422
Q ss_pred hhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhh-----cccCCcEEEEeccCCCCCC-----CCCCCCCCcceeeec
Q 043039 762 EVNHQAIIEALRPHPNLESLQISFYEVKARFPNWIL-----SLNKLRMLCLSFCKKCEIM-----PPLGKLQSLEVLDIW 831 (949)
Q Consensus 762 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~-----~l~~L~~L~L~~~~~~~~~-----~~l~~l~~L~~L~L~ 831 (949)
+...+...++.+++|+.|+++.|.+...--..+. ..|+|+.|.|.+|.+...- -.....|.|+.|+|.
T Consensus 229 --gs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLn 306 (382)
T KOG1909|consen 229 --GSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLN 306 (382)
T ss_pred --HHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCC
Confidence 2233444555566666666666665442221111 3566666666666543211 013345666666666
Q ss_pred CCC
Q 043039 832 EMH 834 (949)
Q Consensus 832 ~~~ 834 (949)
+|.
T Consensus 307 gN~ 309 (382)
T KOG1909|consen 307 GNR 309 (382)
T ss_pred ccc
Confidence 655
No 57
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=2.5e-06 Score=91.94 Aligned_cols=179 Identities=17% Similarity=0.215 Sum_probs=117.6
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcC----cccccccceEEEEEe-CCCCCHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYND----ADVSNNFNVMIWVCV-SDPFDVFRV 248 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~----~~~~~~f~~~~wv~~-~~~~~~~~~ 248 (949)
.+++|-+..++.+..++.... -.+...++|+.|+||||+|+.++.. .....|.|...|... +....+.+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 357899999999999986432 3568889999999999999888763 122345565555442 22222222
Q ss_pred HHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccchhhH-hhh-
Q 043039 249 WKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKETVA-RMI- 326 (949)
Q Consensus 249 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~~~- 326 (949)
.+++.+.+.. .-..+++=++|+|+++......++.+...+.....++.+|++|.+.+.. ..+
T Consensus 78 ir~~~~~~~~----------------~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IRNIIEEVNK----------------KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHHhc----------------CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 2222222211 1112455678888887776678999999998878889999888764322 222
Q ss_pred cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHH
Q 043039 327 GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKT 382 (949)
Q Consensus 327 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 382 (949)
.....+.+.++++++....+.+...+ .. .+.+..++..++|.|.-+..
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~----~~----~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYND----IK----EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcC----CC----HHHHHHHHHHcCCCHHHHHH
Confidence 23568999999999998888665311 11 23366788899998865543
No 58
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=4.7e-06 Score=90.13 Aligned_cols=207 Identities=15% Similarity=0.156 Sum_probs=131.1
Q ss_pred ccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHH
Q 043039 175 EVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIE 254 (949)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 254 (949)
.+.+|+++++++...|...-. +..+.-+.|+|.+|+|||+.++.+....+....-..+++|++-...+..+++..|+.
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHH
Confidence 489999999999998865443 222334899999999999999999986333222222899999999999999999999
Q ss_pred hcCCCCCCCcchHHHHHHHHhhhC--CceEEEEEeCCCCCCcccHHHHHHhhhccC-CCcEE--EEEccchhhHh-----
Q 043039 255 NLDGYTPDLGELNTLHQLINNRIG--GKKVLLVLDDVWTEDGNKWESFQRCLINAH-RGSKI--LVTTRKETVAR----- 324 (949)
Q Consensus 255 ~l~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~gs~i--ivTtr~~~v~~----- 324 (949)
+++..........+..+.+.+.+. ++.++||||++.......-+.+...+.... ..++| |..+.+.....
T Consensus 96 ~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~r 175 (366)
T COG1474 96 KLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPR 175 (366)
T ss_pred HcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhh
Confidence 998554444555666666666664 689999999996532221133444333322 23443 33444333222
Q ss_pred ---hhcCcceEeCCCCChHhHHHHHHHHhhccCC-CCCchhHHHHHHHHHHhcC-CCchHHHHHH
Q 043039 325 ---MIGSTCVISIEELSEPECWSLFKRFAFLNRS-RSDCKQLEEIGRKITWKCK-GLPLAVKTIG 384 (949)
Q Consensus 325 ---~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~-g~Plal~~~~ 384 (949)
.++. ..+...+-+.+|-.+++..++-..-. ........+.+..++..-+ ---.|+..+.
T Consensus 176 v~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 176 VKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred hhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 2222 34788899999999999988743211 1222333333444444444 4445554443
No 59
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.55 E-value=1.2e-06 Score=85.35 Aligned_cols=178 Identities=21% Similarity=0.292 Sum_probs=96.6
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAII 253 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 253 (949)
.+|+|.+..++.+.-++..... ..+...-+.+||++|+||||||.-+.++ ....|. +.+... +
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~~---i-------- 86 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGPA---I-------- 86 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECCC------------
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccchh---h--------
Confidence 5799999988887666543211 2245677899999999999999999986 333442 222211 0
Q ss_pred HhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccC--------CCcE-----------EE
Q 043039 254 ENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAH--------RGSK-----------IL 314 (949)
Q Consensus 254 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~--------~gs~-----------ii 314 (949)
....++...+.. ++ ++-+|.+|++..-.....+.+..++.++. +++| |=
T Consensus 87 ----------~k~~dl~~il~~-l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTlig 154 (233)
T PF05496_consen 87 ----------EKAGDLAAILTN-LK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIG 154 (233)
T ss_dssp -----------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEE
T ss_pred ----------hhHHHHHHHHHh-cC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEee
Confidence 011112222222 22 34578889997765444555555554321 1111 22
Q ss_pred EEccchhhHhhhcCc--ceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHH
Q 043039 315 VTTRKETVARMIGST--CVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIG 384 (949)
Q Consensus 315 vTtr~~~v~~~~~~~--~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 384 (949)
-|||.-.+...+... -..+++..+.+|-.++..+.+..-. .+-..+.+.+|++++.|-|--..-+-
T Consensus 155 ATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~----i~i~~~~~~~Ia~rsrGtPRiAnrll 222 (233)
T PF05496_consen 155 ATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN----IEIDEDAAEEIARRSRGTPRIANRLL 222 (233)
T ss_dssp EESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHH
T ss_pred eeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC----CCcCHHHHHHHHHhcCCChHHHHHHH
Confidence 377765544433332 2457999999999999988764322 33457788999999999996544433
No 60
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=1.8e-06 Score=97.19 Aligned_cols=183 Identities=14% Similarity=0.171 Sum_probs=115.2
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccc------------------------c
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVS------------------------N 229 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~------------------------~ 229 (949)
.++||-+..++.|.+++.... -.+.+.++|..|+||||+|+.+.+...-. +
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAG 90 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcC
Confidence 469999999999999997543 34678899999999999998886531110 0
Q ss_pred ccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHh-hhCCceEEEEEeCCCCCCcccHHHHHHhhhccC
Q 043039 230 NFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINN-RIGGKKVLLVLDDVWTEDGNKWESFQRCLINAH 308 (949)
Q Consensus 230 ~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~ 308 (949)
.|.-+++++.+....+ ++..++.+.+.. -..++.-++|||+++......++.+...+..-.
T Consensus 91 ~hpDviEIdAas~~gV------------------DdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP 152 (700)
T PRK12323 91 RFVDYIEMDAASNRGV------------------DEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPP 152 (700)
T ss_pred CCCcceEecccccCCH------------------HHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCC
Confidence 1111222222211111 112222222211 123556699999998877777888888776655
Q ss_pred CCcEEEEEccc-hhhHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHH
Q 043039 309 RGSKILVTTRK-ETVARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTI 383 (949)
Q Consensus 309 ~gs~iivTtr~-~~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 383 (949)
.++++|++|.+ ..+...+ .....+.++.++.++..+.+.+.+...+.. ...+..+.|++.++|.|.....+
T Consensus 153 ~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~----~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 153 EHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA----HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred CCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 56666665554 4444333 235689999999999999988776433221 12345577899999999654433
No 61
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=4.1e-07 Score=102.72 Aligned_cols=197 Identities=18% Similarity=0.175 Sum_probs=115.1
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAII 253 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 253 (949)
.+++|-+..++.|..++.... -.+.+.++|++|+||||+|+.+.+...-.+.+....|.+.+.. .+......-+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCce
Confidence 358999999999999886542 3467799999999999999988775321112211222221100 0000000000
Q ss_pred HhcCCC-CCCCcchHHHHHHHHh-hhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccc-hhhHhhh-cCc
Q 043039 254 ENLDGY-TPDLGELNTLHQLINN-RIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRK-ETVARMI-GST 329 (949)
Q Consensus 254 ~~l~~~-~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~-~~~ 329 (949)
..+... .....+..++...+.. -..+++-++|+|+++......++.+...+......+.+|++|.. ..+...+ ...
T Consensus 88 ~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 88 LEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred EEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce
Confidence 001110 0001112222222221 12345669999999877666788888887765556666666544 3333333 235
Q ss_pred ceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHH
Q 043039 330 CVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAV 380 (949)
Q Consensus 330 ~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 380 (949)
..+++.+++.++....+.+.+...+... ..+....|++.++|.+--+
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi~i----~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGREA----EPEALQLVARLADGAMRDA 214 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 6899999999999999998875443222 2456778889999988544
No 62
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.54 E-value=1.1e-07 Score=94.31 Aligned_cols=77 Identities=23% Similarity=0.343 Sum_probs=42.4
Q ss_pred ccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCC-----CCHHHHH
Q 043039 175 EVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDP-----FDVFRVW 249 (949)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~ 249 (949)
.|+||+++++++.+.|. .. .....+.+.|+|.+|+|||+|+++++......+.+ ++.+.+... .....++
T Consensus 1 ~fvgR~~e~~~l~~~l~-~~--~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 75 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLD-AA--QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY--VISINCDDSERNPYSPFRSAL 75 (185)
T ss_dssp --TT-HHHHHHHHHTTG-GT--SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT----EEEEEEETTTS-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-HH--HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE--EEEEEEeccccchhhHHHHHH
Confidence 48999999999999996 22 23456899999999999999999988864333222 333333332 1235555
Q ss_pred HHHHHhc
Q 043039 250 KAIIENL 256 (949)
Q Consensus 250 ~~i~~~l 256 (949)
++++.++
T Consensus 76 ~~l~~~~ 82 (185)
T PF13191_consen 76 RQLIDQL 82 (185)
T ss_dssp HHHS---
T ss_pred HHHHHHh
Confidence 5555553
No 63
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=2.9e-06 Score=95.84 Aligned_cols=181 Identities=16% Similarity=0.175 Sum_probs=115.0
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccc-------------------cccceE
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVS-------------------NNFNVM 234 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~ 234 (949)
.+++|.+...+.|.+++.... -.+.+.++|+.|+||||+|+.+.+...-. +.|--+
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 469999999999999996432 34788999999999999999887641100 111112
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHH-hhhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEE
Q 043039 235 IWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLIN-NRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKI 313 (949)
Q Consensus 235 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 313 (949)
+.+..+....+ .+...+...+. .-..+++-++|+|++........+.+...+.....+.++
T Consensus 90 iEIDAAs~~~V------------------ddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~F 151 (702)
T PRK14960 90 IEIDAASRTKV------------------EDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKF 151 (702)
T ss_pred EEecccccCCH------------------HHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEE
Confidence 22222211111 11112221111 112356669999999877666777888887766667788
Q ss_pred EEEccch-hhHhh-hcCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHH
Q 043039 314 LVTTRKE-TVARM-IGSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVK 381 (949)
Q Consensus 314 ivTtr~~-~v~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 381 (949)
|++|.+. .+... ......+++++++.++..+.+.+.+...+... ..+....|++.++|.+..+.
T Consensus 152 ILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~i----d~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 152 LFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAA----DQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred EEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 8877653 22222 23356899999999999999988775443322 24556778888999775443
No 64
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.51 E-value=1.6e-08 Score=99.70 Aligned_cols=132 Identities=24% Similarity=0.258 Sum_probs=109.5
Q ss_pred ccCCceEEEEEeccCCCCcccccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCee
Q 043039 539 CYEKLRHSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYL 618 (949)
Q Consensus 539 ~~~~~r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L 618 (949)
.|+.+..+.++++.+..+..+..-.+++|.|+++.|.+..+.. +..+++|..|||++|. +..+-..-.+|-+.+.|
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~---Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL---LAECVGWHLKLGNIKTL 357 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch---hHhhhhhHhhhcCEeee
Confidence 3466777788888877777777888999999999999888776 8889999999999998 55554444578889999
Q ss_pred eecccCCcccchhhcCCCCCcEEeecCCCCCCccc--cccccCCCCCeeeCCCcccccCC
Q 043039 619 KLFFVGIEELPETFCELFNLQNLDLRRCSKFKRLP--QNIGKLVNLRHLIFDEDDLDYMP 676 (949)
Q Consensus 619 ~L~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~l~~~p 676 (949)
.|++|.|..+ +.+.+|.+|..||+++|+ ++.+. ..|++|+-|+++.+.+|.+..+|
T Consensus 358 ~La~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 358 KLAQNKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred ehhhhhHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 9999998877 578899999999999988 66654 47899999999999888887665
No 65
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.48 E-value=5.6e-06 Score=90.21 Aligned_cols=182 Identities=14% Similarity=0.150 Sum_probs=107.8
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccc-eEEEEEeCCCCCHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFN-VMIWVCVSDPFDVFRVWKAI 252 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 252 (949)
.+++|+++.++.+..++... ..+.+.++|.+|+||||+|+.+.+..... .+. ..+-++.+....... ..+.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~-~~~~~~i~~~~~~~~~~~~-~~~~ 88 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELYGE-DWRENFLELNASDERGIDV-IRNK 88 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHcCC-ccccceEEeccccccchHH-HHHH
Confidence 45889999999999998542 23357999999999999999998752111 111 111122222221111 1111
Q ss_pred HHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccch-hhHhhh-cCcc
Q 043039 253 IENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKE-TVARMI-GSTC 330 (949)
Q Consensus 253 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~ 330 (949)
+..+....+ .....+-++|+|+++.........+...+......+++|+++... .+.... ....
T Consensus 89 i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~ 154 (319)
T PRK00440 89 IKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCA 154 (319)
T ss_pred HHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhh
Confidence 111100000 001235689999997654445566777766655667788777542 221111 2234
Q ss_pred eEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHH
Q 043039 331 VISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVK 381 (949)
Q Consensus 331 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 381 (949)
.+++.+++.++...++...+...+..- ..+....+++.++|.+.-+.
T Consensus 155 ~~~~~~l~~~ei~~~l~~~~~~~~~~i----~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 155 VFRFSPLKKEAVAERLRYIAENEGIEI----TDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 789999999999999888775433222 24466778888998876543
No 66
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.48 E-value=1.2e-06 Score=83.23 Aligned_cols=125 Identities=20% Similarity=0.193 Sum_probs=74.7
Q ss_pred ccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhc
Q 043039 177 CGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENL 256 (949)
Q Consensus 177 ~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 256 (949)
+|+++.+..+...+... ..+.+.|+|++|+|||++++.+++... ..-..++++...+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47888999999988643 245788999999999999999998632 222346666665433322211111000
Q ss_pred CCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhcc------CCCcEEEEEccchh
Q 043039 257 DGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINA------HRGSKILVTTRKET 321 (949)
Q Consensus 257 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~------~~gs~iivTtr~~~ 321 (949)
............++.++|+||++.........+...+... ..+..||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999764323333444444332 35778888888653
No 67
>PF13173 AAA_14: AAA domain
Probab=98.46 E-value=8.5e-07 Score=81.49 Aligned_cols=119 Identities=24% Similarity=0.307 Sum_probs=78.6
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCce
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKK 281 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 281 (949)
+++.|.|+.|+||||++++++.+.. ....+++++..+....... +.+ ..+.+.+....++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~----------------~~~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA----------------DPD-LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh----------------hhh-hHHHHHHhhccCC
Confidence 5899999999999999999987522 3355777776653321110 000 2233333333467
Q ss_pred EEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccchhhHhh------hcCcceEeCCCCChHhH
Q 043039 282 VLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKETVARM------IGSTCVISIEELSEPEC 342 (949)
Q Consensus 282 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~------~~~~~~~~l~~l~~~~~ 342 (949)
.+|+||++... ..|......+.+..+..+|++|+.+...... .+....+++.||+-.|.
T Consensus 63 ~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 89999999665 4677766666665566799999998665532 12245788999987763
No 68
>PLN03025 replication factor C subunit; Provisional
Probab=98.46 E-value=4.1e-06 Score=90.42 Aligned_cols=181 Identities=14% Similarity=0.153 Sum_probs=107.9
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccc-eEEEEEeCCCCCHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFN-VMIWVCVSDPFDVFRVWKAI 252 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 252 (949)
.+++|.++.++.|..++... ..+-+.++|++|+||||+|+.+.+... ...|. .++-+..++..... .++++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHH-HHHHH
Confidence 35889999899888887542 233467899999999999999887521 11221 12222333222221 12222
Q ss_pred HHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccch-hhHhhh-cCcc
Q 043039 253 IENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKE-TVARMI-GSTC 330 (949)
Q Consensus 253 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~ 330 (949)
++.+..... ..-.++.-++|+|+++.........+...+......+++|+++... .+...+ ....
T Consensus 85 i~~~~~~~~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 85 IKMFAQKKV-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHHHhccc-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 221110000 0002346699999998776556666776665555667788777542 222111 1235
Q ss_pred eEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchH
Q 043039 331 VISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLA 379 (949)
Q Consensus 331 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 379 (949)
.+++.+++.++....+...+...+..-. .+....|++.++|-.-.
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMRQ 196 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 7899999999999998887754333222 34567788888876643
No 69
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.45 E-value=8.3e-06 Score=91.79 Aligned_cols=198 Identities=16% Similarity=0.192 Sum_probs=114.1
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccce-EEEEEeCCCCCHHHHHHH-
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNV-MIWVCVSDPFDVFRVWKA- 251 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~- 251 (949)
.+++|-+..+..|...+.... -.+.+.++|+.|+||||+|+.+++...-...... -.+..+....+-..+...
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCC
Confidence 358999999999988775432 2467889999999999999998764211100000 000000000000000000
Q ss_pred --HHHhcCC-CCCCCcchHHHHHHHH-hhhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEc-cchhhHhhh
Q 043039 252 --IIENLDG-YTPDLGELNTLHQLIN-NRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTT-RKETVARMI 326 (949)
Q Consensus 252 --i~~~l~~-~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~~~ 326 (949)
-+..+.. ......+...+.+... .-+.+++-++|+|+++......++.+...+......+.+|++| +.+.+...+
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI 175 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATI 175 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHH
Confidence 0000000 0011122222222221 1123567799999998876677888888887766666766544 444554433
Q ss_pred c-CcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHH
Q 043039 327 G-STCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAV 380 (949)
Q Consensus 327 ~-~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 380 (949)
. ....+++.+++.++....+.+.+...+... ..+....|++.++|.+.-+
T Consensus 176 ~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i----e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 176 ISRCQRYDLRRLSFEEIFKLLEYITKQENLKT----DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HhcceEEEccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 2 346799999999999999998875443222 2445667888899877444
No 70
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=6.1e-06 Score=93.40 Aligned_cols=185 Identities=18% Similarity=0.232 Sum_probs=115.5
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCccc-------------------ccccceE
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADV-------------------SNNFNVM 234 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-------------------~~~f~~~ 234 (949)
.+++|.+..++.|...+.... -.+.+.++|+.|+||||+|+.+.+...- .+.|..+
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 458999999999999986432 3466889999999999999988763110 0112223
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHh-hhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEE
Q 043039 235 IWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINN-RIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKI 313 (949)
Q Consensus 235 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 313 (949)
+++.......+. +.+.+.+.+.. -..+++-++|+|++.......++.+...+......+++
T Consensus 91 ieidaas~~gvd------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGVE------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 333322222221 22222222221 12356679999999877667788888888776666666
Q ss_pred EEEccc-hhhHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCch-HHHHHHh
Q 043039 314 LVTTRK-ETVARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPL-AVKTIGS 385 (949)
Q Consensus 314 ivTtr~-~~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 385 (949)
|++|.+ ..+...+ .....+++.+++.++....+.+.+...+.. ...+....|++.++|-+- |+..+-.
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~----~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENIN----SDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 655543 4444332 335789999999999988888765433221 224455678888998664 4444433
No 71
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=3.7e-06 Score=92.45 Aligned_cols=195 Identities=15% Similarity=0.173 Sum_probs=114.7
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAII 253 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 253 (949)
.+++|.+..+..|..++.... -.+.+.++|+.|+||||+|+.+.+...-..... ...+....+-..+.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~---~~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCENPIG---NEPCNECTSCLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcccccC---ccccCCCcHHHHHHccCC
Confidence 458999999999999986532 235689999999999999999987521110000 000111111111111110
Q ss_pred Hh---cCC-CCCCCcchHHHHHHHHh-hhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccc-hhhHhhh-
Q 043039 254 EN---LDG-YTPDLGELNTLHQLINN-RIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRK-ETVARMI- 326 (949)
Q Consensus 254 ~~---l~~-~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~- 326 (949)
.. +.. ......+..++.+.+.. ...++.-++|+|+++......++.+...+........+|++|.. ..+...+
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 00 010 00111223333333322 12456679999999887777788887777554445555555544 4444333
Q ss_pred cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHH
Q 043039 327 GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAV 380 (949)
Q Consensus 327 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 380 (949)
.....+.+.+++.++..+.+.+.+...+.. ...+....|++.++|.+.-.
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~----~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIENVQ----YDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCChHHHH
Confidence 235679999999999999888876543321 22456678899999988433
No 72
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.42 E-value=5.4e-06 Score=94.70 Aligned_cols=182 Identities=12% Similarity=0.164 Sum_probs=112.5
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccc-------------------cccceE
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVS-------------------NNFNVM 234 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~ 234 (949)
.+++|.+..++.|.+++.... -.+.+.++|+.|+||||+|+.+.+...-. +.|.-+
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 469999999999999997532 34678999999999999998886641100 011111
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHh-hhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEE
Q 043039 235 IWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINN-RIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKI 313 (949)
Q Consensus 235 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 313 (949)
+.+..+....+ .++..+...... -..+++-++|+|++........+.+...+......+++
T Consensus 91 lEidaAs~~gV------------------d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~f 152 (709)
T PRK08691 91 LEIDAASNTGI------------------DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (709)
T ss_pred EEEeccccCCH------------------HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEE
Confidence 22222211111 112222221111 12245668999999776555667777777665556777
Q ss_pred EEEccch-hhHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHH
Q 043039 314 LVTTRKE-TVARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKT 382 (949)
Q Consensus 314 ivTtr~~-~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 382 (949)
|++|.+. .+...+ +....+++.+++.++....+.+.+-..+.. ...+....|++.++|.+.-+..
T Consensus 153 ILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~----id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 153 ILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA----YEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred EEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC----cCHHHHHHHHHHhCCCHHHHHH
Confidence 7777543 232221 234578888999999999998877543322 2245667888899998854433
No 73
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.42 E-value=4.9e-06 Score=84.79 Aligned_cols=157 Identities=19% Similarity=0.218 Sum_probs=98.5
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhC
Q 043039 199 NAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIG 278 (949)
Q Consensus 199 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 278 (949)
+....+.+||++|+||||||+.+....+... +.||..|....-..-.++|+++-.. ...+.
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~---------------~~~l~ 220 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN---------------EKSLT 220 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH---------------HHhhh
Confidence 4577889999999999999999998643322 5677766544444444444444211 12345
Q ss_pred CceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEE--EccchhhH---hhhcCcceEeCCCCChHhHHHHHHHHhh--
Q 043039 279 GKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILV--TTRKETVA---RMIGSTCVISIEELSEPECWSLFKRFAF-- 351 (949)
Q Consensus 279 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v~---~~~~~~~~~~l~~l~~~~~~~l~~~~~~-- 351 (949)
++|.+|.+|.|..-...+. ..++|...+|.-++| ||.++... ..+....++.++.|..++-..++.+...
T Consensus 221 krkTilFiDEiHRFNksQQ---D~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l 297 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQQ---DTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASL 297 (554)
T ss_pred cceeEEEeHHhhhhhhhhh---hcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhh
Confidence 7899999999954222222 234677778887777 66665432 2234567899999999999998887443
Q ss_pred -ccCC---CCCc---hhHHHHHHHHHHhcCCCc
Q 043039 352 -LNRS---RSDC---KQLEEIGRKITWKCKGLP 377 (949)
Q Consensus 352 -~~~~---~~~~---~~~~~~~~~i~~~~~g~P 377 (949)
.... ..+. .....+.+-++..|.|-.
T Consensus 298 ~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 298 GDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred ccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 1111 1111 123445666777777754
No 74
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.2e-07 Score=98.88 Aligned_cols=38 Identities=24% Similarity=0.171 Sum_probs=20.3
Q ss_pred CCCcCceEEeccccCCCCC--chhhcccCCcEEEEeccCCC
Q 043039 775 HPNLESLQISFYEVKARFP--NWILSLNKLRMLCLSFCKKC 813 (949)
Q Consensus 775 ~~~L~~L~L~~~~~~~~~p--~~~~~l~~L~~L~L~~~~~~ 813 (949)
+..|+.|+|++|++.. ++ ...+.++.|..|+++.|.+.
T Consensus 245 ~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIA 284 (505)
T ss_pred hhHHhhccccCCcccc-cccccccccccchhhhhccccCcc
Confidence 3456666666665554 44 23345556666666555543
No 75
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=9.2e-06 Score=90.57 Aligned_cols=181 Identities=18% Similarity=0.168 Sum_probs=115.6
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCc----cc---------------ccccceE
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDA----DV---------------SNNFNVM 234 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~----~~---------------~~~f~~~ 234 (949)
.+++|.+..++.|.+.+.... -.+.+.++|+.|+||||+|+.+.... .. .+.+.-+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 468999999999988886432 24578899999999999998876520 00 0112223
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEE
Q 043039 235 IWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKIL 314 (949)
Q Consensus 235 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 314 (949)
+.++.+....+.+ .+++++.... .-..+++-++|+|++........+.+...+..-.+.+++|
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~----------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCY----------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHh----------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 4444443333322 1222222110 0112455689999997766667788888887766677777
Q ss_pred EEccc-hhhHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHH
Q 043039 315 VTTRK-ETVARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAV 380 (949)
Q Consensus 315 vTtr~-~~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 380 (949)
++|.. +.+...+ .....+++.+++.++..+.+.+.+...+... ..+....|++.++|.+..+
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i----~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH----DEESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 76644 4444333 3356899999999999999988875443322 2455677888898877543
No 76
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=8.5e-06 Score=93.70 Aligned_cols=194 Identities=14% Similarity=0.192 Sum_probs=115.6
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAII 253 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 253 (949)
.+++|-+..++.|.+.+.... -.+.+.++|..|+||||+|+.+.+...-...+. ..+...-..-+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHH
Confidence 468999999999999886532 245678999999999999998876421100000 00000001111111
Q ss_pred Hh-------cCCCC-CCCcchHHHHHHHHh-hhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccc-hhhH
Q 043039 254 EN-------LDGYT-PDLGELNTLHQLINN-RIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRK-ETVA 323 (949)
Q Consensus 254 ~~-------l~~~~-~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 323 (949)
.. +.... ...++...+.+.+.. -..+++-++|+|+++.......+.+...+.......++|++|.+ ..+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 00 00000 111122222222221 12466779999999887777888888888766566666666655 4343
Q ss_pred hhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHH
Q 043039 324 RMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTI 383 (949)
Q Consensus 324 ~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 383 (949)
..+ .....+.+.+++.++....+.+.+...+.. ...+....|++.++|.+--+..+
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~----~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIP----FEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 332 235789999999999999998876432221 12445677888999988644433
No 77
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.39 E-value=2.3e-07 Score=104.30 Aligned_cols=122 Identities=27% Similarity=0.448 Sum_probs=56.5
Q ss_pred CCceEEEecCCCCCCcchhhccCC-ceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccchhhcCCCCCcEEe
Q 043039 564 KKLRSLLIQGYSLQHMPSFFDQLT-CLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPETFCELFNLQNLD 642 (949)
Q Consensus 564 ~~Lr~L~l~~~~l~~l~~~~~~l~-~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L~~L~ 642 (949)
+.+..|.+.++.+..++.....+. +|+.|+++++. +..+|..++.+++|+.|++++|.+..+|...+.+++|+.|+
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~---i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK---IESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccc---hhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 444445555544444444333332 45555555444 44444444455555555555555555444444444555555
Q ss_pred ecCCCCCCccccccccCCCCCeeeCCCcccccCCcCCCCCCCCcccC
Q 043039 643 LRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLS 689 (949)
Q Consensus 643 L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~ 689 (949)
+++|. +..+|..+..+..|+.|.++.|.+...+..+.+++++..|.
T Consensus 193 ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~ 238 (394)
T COG4886 193 LSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLE 238 (394)
T ss_pred ccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccc
Confidence 55444 44444444444444444444443333333444444444443
No 78
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.39 E-value=9.3e-09 Score=104.14 Aligned_cols=257 Identities=18% Similarity=0.139 Sum_probs=134.5
Q ss_pred hccCCceeEEEeCCccccc--cccccccccCCCCCCeeeecccC----Ccccchh-------hcCCCCCcEEeecCCCCC
Q 043039 583 FDQLTCLRALRIGKYGDDA--IERIPNGIEKLIHLRYLKLFFVG----IEELPET-------FCELFNLQNLDLRRCSKF 649 (949)
Q Consensus 583 ~~~l~~Lr~L~L~~~~~~~--~~~lp~~i~~l~~L~~L~L~~~~----i~~lp~~-------l~~L~~L~~L~L~~~~~l 649 (949)
...+..+..++|++|.... .+.+-..+.+.++|+.-++++-. ..++|+. +...++|++||||+|.+-
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 4566778888888876210 11233446666777777777543 2244443 334567777777777643
Q ss_pred Ccccc----ccccCCCCCeeeCCCcccccCCcCCCCCCCCcccCccceecCCCccCCCccCcccccccccCCCceEEccC
Q 043039 650 KRLPQ----NIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKIRGL 725 (949)
Q Consensus 650 ~~lp~----~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~ 725 (949)
..-+. -+.++..|++|++.+|.+...-.+ . ....+.+|.
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~--~---------------------l~~al~~l~-------------- 148 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGG--R---------------------LGRALFELA-------------- 148 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHH--H---------------------HHHHHHHHH--------------
Confidence 33322 234455666666555443311000 0 000111111
Q ss_pred CCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCC----CchhhcccC
Q 043039 726 GNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARF----PNWILSLNK 801 (949)
Q Consensus 726 ~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~----p~~~~~l~~ 801 (949)
.+....+.+.|+.+....|...+. +...+-..|..++.|+.+.+..|.+...- -..+..+++
T Consensus 149 ---------~~kk~~~~~~Lrv~i~~rNrlen~-----ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~ 214 (382)
T KOG1909|consen 149 ---------VNKKAASKPKLRVFICGRNRLENG-----GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPH 214 (382)
T ss_pred ---------HHhccCCCcceEEEEeeccccccc-----cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCc
Confidence 112234556777777777766543 33445556666777888887777654311 122346778
Q ss_pred CcEEEEeccCCCCCCC-----CCCCCCCcceeeecCCCCcEEeCCc-ccCCCCCCCCccceeeecccccccc-ccccccc
Q 043039 802 LRMLCLSFCKKCEIMP-----PLGKLQSLEVLDIWEMHGIKRVGDE-VLGIEIIAFPRLKKFTLWSLDGWEE-WEFIEEN 874 (949)
Q Consensus 802 L~~L~L~~~~~~~~~~-----~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~~~f~~L~~L~l~~l~~l~~-~~~~~~~ 874 (949)
|+.|+|.+|.+...-. .+..+|+|+.|++.+|. ++.-+.. +.......+|+|+.|.+.++.--.+ .......
T Consensus 215 LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~ 293 (382)
T KOG1909|consen 215 LEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAAC 293 (382)
T ss_pred ceeeecccchhhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHH
Confidence 8888888776543211 25667788888888776 2222211 1111122467777777655321111 1111112
Q ss_pred cccccccceeccccCcc
Q 043039 875 ITIMPQLNSLAIRDCSK 891 (949)
Q Consensus 875 ~~~l~~L~~L~l~~c~~ 891 (949)
+...|.|..|+|+.|..
T Consensus 294 ~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 294 MAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhcchhhHHhcCCcccc
Confidence 33577888888888843
No 79
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=9e-06 Score=91.20 Aligned_cols=201 Identities=19% Similarity=0.245 Sum_probs=116.0
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCccccc-------------------ccceE
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSN-------------------NFNVM 234 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~ 234 (949)
.+++|.+...+.|...+.... -.+.+.++|++|+||||+|+.+.+...-.. .+..+
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 459999988888888876432 346688999999999999999876421100 01112
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHh-hhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEE
Q 043039 235 IWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINN-RIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKI 313 (949)
Q Consensus 235 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 313 (949)
+.++.+....+. +...+.+.+.. ...+++-++|+|+++.......+.+...+........+
T Consensus 89 ~el~aa~~~gid------------------~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 89 IELDAASNRGID------------------EIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred EEEeCcccCCHH------------------HHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 222222211111 11111121111 12355679999999655444556676666554444555
Q ss_pred EEEccc-hhhHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcC-CCchHHHHHHhhhcc-
Q 043039 314 LVTTRK-ETVARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCK-GLPLAVKTIGSLLRF- 389 (949)
Q Consensus 314 ivTtr~-~~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~Plal~~~~~~l~~- 389 (949)
|++|.+ ..+...+ .....+++.+++.++....+.+.+...+..-. .+....|++.++ +.+.|+..+..+...
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~----~eal~~Ia~~s~GdlR~aln~Le~l~~~~ 226 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID----REALSFIAKRASGGLRDALTMLEQVWKFS 226 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 545443 3343333 23568999999999999988887754332222 445667777775 556777766654332
Q ss_pred -C-CCHHHHHHHHh
Q 043039 390 -K-KAREEWQSILD 401 (949)
Q Consensus 390 -~-~~~~~w~~~l~ 401 (949)
+ -+.+....++.
T Consensus 227 ~~~It~e~V~~~l~ 240 (472)
T PRK14962 227 EGKITLETVHEALG 240 (472)
T ss_pred CCCCCHHHHHHHHc
Confidence 1 24455554443
No 80
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=1.1e-05 Score=92.56 Aligned_cols=182 Identities=14% Similarity=0.187 Sum_probs=112.6
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccc------------------------c
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVS------------------------N 229 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~------------------------~ 229 (949)
.+++|-+..++.|.+++.... -.+.+.++|+.|+||||+|+.+.+...-. +
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g 90 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSG 90 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcC
Confidence 458999999999999987543 34678999999999999998885431100 0
Q ss_pred ccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHh-hhCCceEEEEEeCCCCCCcccHHHHHHhhhccC
Q 043039 230 NFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINN-RIGGKKVLLVLDDVWTEDGNKWESFQRCLINAH 308 (949)
Q Consensus 230 ~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~ 308 (949)
.+.-+++++......+ ++..++.+.+.. -..++.-++|||+++......++.+...+..-.
T Consensus 91 ~h~D~~eldaas~~~V------------------d~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP 152 (618)
T PRK14951 91 RFVDYTELDAASNRGV------------------DEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPP 152 (618)
T ss_pred CCCceeecCcccccCH------------------HHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCC
Confidence 1111122222111111 111112211111 112445589999998887777888888776655
Q ss_pred CCcEEEEEccc-hhhHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHH
Q 043039 309 RGSKILVTTRK-ETVARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKT 382 (949)
Q Consensus 309 ~gs~iivTtr~-~~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 382 (949)
...++|++|.+ ..+...+ .....+++++++.++..+.+.+.+...+... ..+....|++.++|.+--+..
T Consensus 153 ~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i----e~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 153 EYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA----EPQALRLLARAARGSMRDALS 224 (618)
T ss_pred CCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 66677666543 4443332 3357899999999999999988765433222 245567788889987755443
No 81
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.37 E-value=0.00013 Score=85.29 Aligned_cols=202 Identities=21% Similarity=0.174 Sum_probs=116.1
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCccccccc---ceEEEEEeCC---CCCHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNF---NVMIWVCVSD---PFDVFR 247 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~---~~~~~~ 247 (949)
++++|++..+..+...+... ....+.|+|++|+||||+|+.+++.......+ ...-|+.+.. ..+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 35889999999888877432 24568999999999999999998764322222 1223443321 112222
Q ss_pred HHHHH---------------HHhcCCCC----------------CCCcch-HHHHHHHHhhhCCceEEEEEeCCCCCCcc
Q 043039 248 VWKAI---------------IENLDGYT----------------PDLGEL-NTLHQLINNRIGGKKVLLVLDDVWTEDGN 295 (949)
Q Consensus 248 ~~~~i---------------~~~l~~~~----------------~~~~~~-~~~~~~l~~~l~~~~~LlVlDdv~~~~~~ 295 (949)
+...+ +...+... .+...+ ...+..+.+.++++++.++-|+.|..+..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 21111 11111100 001111 23456777888888888888877777666
Q ss_pred cHHHHHHhhhccCCCcEEEE--Eccchhh-Hhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHH
Q 043039 296 KWESFQRCLINAHRGSKILV--TTRKETV-ARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITW 371 (949)
Q Consensus 296 ~~~~l~~~l~~~~~gs~iiv--Ttr~~~v-~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 371 (949)
.|..+...+....+...|+| ||++... ...+ .....+.+.+++.++.+.++.+.+...... -..++.+.|.+
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~----ls~eal~~L~~ 383 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH----LAAGVEELIAR 383 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHH
Confidence 78777766666655555555 5664332 1111 123467889999999999999876432211 11334444555
Q ss_pred hcCCCchHHHHHHh
Q 043039 372 KCKGLPLAVKTIGS 385 (949)
Q Consensus 372 ~~~g~Plal~~~~~ 385 (949)
.+..-+-|+..++.
T Consensus 384 ys~~gRraln~L~~ 397 (615)
T TIGR02903 384 YTIEGRKAVNILAD 397 (615)
T ss_pred CCCcHHHHHHHHHH
Confidence 55433455554443
No 82
>PRK08727 hypothetical protein; Validated
Probab=98.36 E-value=1.7e-05 Score=81.06 Aligned_cols=148 Identities=15% Similarity=0.086 Sum_probs=87.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCce
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKK 281 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 281 (949)
..+.|+|..|+|||+|++.+++.... ....+.|+++.+ ....+. ..+. .+ .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~--~~~~~~y~~~~~------~~~~~~-----------------~~~~-~l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQ--AGRSSAYLPLQA------AAGRLR-----------------DALE-AL-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEeHHH------hhhhHH-----------------HHHH-HH-hcC
Confidence 45999999999999999999876322 223456666432 111100 1111 11 123
Q ss_pred EEEEEeCCCCCCc-ccHHH-HHHhhhc-cCCCcEEEEEccch---------hhHhhhcCcceEeCCCCChHhHHHHHHHH
Q 043039 282 VLLVLDDVWTEDG-NKWES-FQRCLIN-AHRGSKILVTTRKE---------TVARMIGSTCVISIEELSEPECWSLFKRF 349 (949)
Q Consensus 282 ~LlVlDdv~~~~~-~~~~~-l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~l~~~~~~~l~~~~ 349 (949)
-+||+||+..... ..|.. +...+.. ..+|..||+|++.. .+...+.....+++++++.++-.+++.++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 4999999964321 22332 3332222 13466799999852 22233334568999999999999999987
Q ss_pred hhccCCCCCchhHHHHHHHHHHhcCCCchHH
Q 043039 350 AFLNRSRSDCKQLEEIGRKITWKCKGLPLAV 380 (949)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 380 (949)
+...+- .--.+....|++.+.|-.-++
T Consensus 175 a~~~~l----~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 175 AQRRGL----ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHcCC----CCCHHHHHHHHHhCCCCHHHH
Confidence 754322 122555667777787655444
No 83
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=1.2e-05 Score=91.26 Aligned_cols=182 Identities=14% Similarity=0.180 Sum_probs=113.8
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCccc-------------------ccccceE
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADV-------------------SNNFNVM 234 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-------------------~~~f~~~ 234 (949)
.+++|-+..++.|.+++.... -.+.+.++|+.|+||||+|+.+.+...- .+.|.-+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 458999999999999996542 3457889999999999999888663110 0112223
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEE
Q 043039 235 IWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKIL 314 (949)
Q Consensus 235 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 314 (949)
+.+..+....+.++ +++++.+.- .-..++.-++|+|+++.......+.+...+......+++|
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPY----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhh----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 33333322222221 222222111 1123555689999998877677888888887766677777
Q ss_pred EEccc-hhhHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHH
Q 043039 315 VTTRK-ETVARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVK 381 (949)
Q Consensus 315 vTtr~-~~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 381 (949)
++|.+ ..+...+ .....+++++++.++....+.+.+-..+...+ .+....|++.++|.+.-+.
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~----~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE----NAALDLLARAANGSVRDAL 218 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHH
Confidence 76654 3333222 22457889999999988877776643332222 3445678888988875443
No 84
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.35 E-value=2.7e-05 Score=86.17 Aligned_cols=183 Identities=13% Similarity=0.171 Sum_probs=112.3
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCccc--c------------------cccce
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADV--S------------------NNFNV 233 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~--~------------------~~f~~ 233 (949)
.+++|.+..++.+..++.... -.+.+.++|++|+||||+|+.+.....- . .+++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 458999999999999886432 3467889999999999999887654110 0 12222
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHh-hhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcE
Q 043039 234 MIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINN-RIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSK 312 (949)
Q Consensus 234 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 312 (949)
+++..+...... +...+.+.+.. -..+++-++|+|++........+.+...+......+.
T Consensus 89 -~~~~~~~~~~~~------------------~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 89 -IEIDAASNNGVD------------------DIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred -EEeeccccCCHH------------------HHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 233222111111 11122222211 1224455899999976554556777777755555677
Q ss_pred EEEEccchh-hHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHH
Q 043039 313 ILVTTRKET-VARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIG 384 (949)
Q Consensus 313 iivTtr~~~-v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 384 (949)
+|++|.+.. +...+ .....+++.++++++..+++..++-..+... ..+.+..+++.++|.|..+....
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i----~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI----EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCChHHHHHHH
Confidence 777765533 23222 2245788899999999999988775433211 24567788889999886655443
No 85
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.34 E-value=1.3e-05 Score=82.27 Aligned_cols=171 Identities=18% Similarity=0.149 Sum_probs=97.9
Q ss_pred ccchh-HHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHh
Q 043039 177 CGRNE-EKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIEN 255 (949)
Q Consensus 177 ~Gr~~-~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 255 (949)
.|... .+..+.++.... ...+.+.|+|..|+|||+||+.+++..... . ..+.+++...... .
T Consensus 22 ~~~~~~~~~~l~~~~~~~-----~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-~-~~~~~i~~~~~~~------~---- 84 (227)
T PRK08903 22 AGENAELVARLRELAAGP-----VADRFFYLWGEAGSGRSHLLQALVADASYG-G-RNARYLDAASPLL------A---- 84 (227)
T ss_pred cCCcHHHHHHHHHHHhcc-----CCCCeEEEECCCCCCHHHHHHHHHHHHHhC-C-CcEEEEehHHhHH------H----
Confidence 35543 344454544321 123578899999999999999998852111 1 2344555433110 0
Q ss_pred cCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhcc-CCCc-EEEEEccchhhHh--------h
Q 043039 256 LDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINA-HRGS-KILVTTRKETVAR--------M 325 (949)
Q Consensus 256 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~iivTtr~~~v~~--------~ 325 (949)
+ ... ...-+||+||+...+......+...+... ..+. .||+|++...... .
T Consensus 85 ~------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr 145 (227)
T PRK08903 85 F------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTR 145 (227)
T ss_pred H------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHH
Confidence 0 011 12347899999654433334455555332 2344 3666666432211 2
Q ss_pred hcCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHHhhh
Q 043039 326 IGSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIGSLL 387 (949)
Q Consensus 326 ~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 387 (949)
+.....+++.++++++-..++.+.+-..+. .--.+..+.+++.+.|.+..+..+-..+
T Consensus 146 ~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v----~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 146 LGWGLVYELKPLSDADKIAALKAAAAERGL----QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HhcCeEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 222368899999998877777765432222 1224567778888999998887766554
No 86
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.33 E-value=1.5e-05 Score=87.30 Aligned_cols=183 Identities=13% Similarity=0.130 Sum_probs=111.0
Q ss_pred CccccchhHHHHHHHHHccCCCC----CCCCeEEEEEEecCCChHHHHHHHHHcCccc-------------------ccc
Q 043039 174 SEVCGRNEEKNALKGKLLSETAE----QPNAIQVISLVGMGGIGKTTLAQLAYNDADV-------------------SNN 230 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-------------------~~~ 230 (949)
.+++|-+..++.|.+++...... ...-.+.+.++|+.|+|||++|+.+.....- ..|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 35889999999999999764310 0113467889999999999999887653100 001
Q ss_pred cceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHh-hhCCceEEEEEeCCCCCCcccHHHHHHhhhccCC
Q 043039 231 FNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINN-RIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHR 309 (949)
Q Consensus 231 f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 309 (949)
.| +.++..... .....+...+.+.+.. -..+++-++|+|+++.......+.+...+.....
T Consensus 85 pD-~~~i~~~~~-----------------~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~ 146 (394)
T PRK07940 85 PD-VRVVAPEGL-----------------SIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPP 146 (394)
T ss_pred CC-EEEeccccc-----------------cCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCC
Confidence 11 112211100 0001112222222211 1124555888899988776677778877766566
Q ss_pred CcEEEEEccc-hhhHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHH
Q 043039 310 GSKILVTTRK-ETVARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTI 383 (949)
Q Consensus 310 gs~iivTtr~-~~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 383 (949)
+..+|++|.+ ..+...+ .....+.+.+++.++..+.+..... .. .+.+..++..++|.|.....+
T Consensus 147 ~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-----~~----~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 147 RTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-----VD----PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 6767776666 3444333 2356899999999999988875321 11 344677899999999655443
No 87
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.32 E-value=6.9e-06 Score=96.58 Aligned_cols=172 Identities=19% Similarity=0.277 Sum_probs=97.6
Q ss_pred CccccchhHHH---HHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHH
Q 043039 174 SEVCGRNEEKN---ALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWK 250 (949)
Q Consensus 174 ~~~~Gr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 250 (949)
.+|+|.+..+. .+...+... ....+.++|++|+||||+|+.+++. ...+|. .++... ..+
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~------~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i----- 90 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD------RVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGV----- 90 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhh-----
Confidence 45889988774 455555432 3456789999999999999999985 333331 111110 000
Q ss_pred HHHHhcCCCCCCCcchHHHHHHHHhhh--CCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEE--ccch--hhHh
Q 043039 251 AIIENLDGYTPDLGELNTLHQLINNRI--GGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVT--TRKE--TVAR 324 (949)
Q Consensus 251 ~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT--tr~~--~v~~ 324 (949)
.+.........+.+ .+++.++||||++.-....++.+...+. .|+.++|+ |.+. .+..
T Consensus 91 -------------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 91 -------------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred -------------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 11111222222222 2467799999997655455555554433 35555553 3332 1222
Q ss_pred hh-cCcceEeCCCCChHhHHHHHHHHhhccCC---CCCchhHHHHHHHHHHhcCCCch
Q 043039 325 MI-GSTCVISIEELSEPECWSLFKRFAFLNRS---RSDCKQLEEIGRKITWKCKGLPL 378 (949)
Q Consensus 325 ~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~g~Pl 378 (949)
.. .....+.+.+++.++...++.+.+-.... .....-..+....|++.+.|..-
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 11 22457999999999999999887641000 01112234556778888887643
No 88
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=1.2e-05 Score=91.15 Aligned_cols=196 Identities=17% Similarity=0.217 Sum_probs=112.2
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAII 253 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 253 (949)
.+++|++..++.+.+++.... -.+.+.++|+.|+||||+|+.+.+...-.. |.... ........+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHHHH
Confidence 468999999999999886432 346788999999999999998876411000 11100 011111111111
Q ss_pred Hh-------cCCCC-CCCcchHHHHHHHHhh-hCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccc-hhhH
Q 043039 254 EN-------LDGYT-PDLGELNTLHQLINNR-IGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRK-ETVA 323 (949)
Q Consensus 254 ~~-------l~~~~-~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 323 (949)
.. +.... ....+.+.+...+... ..+++-++|+|+++......++.+...+......+.+|++|.. ..+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 10 00000 0111122222222211 1233447999999876666778888887665556666655543 3333
Q ss_pred hhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCch-HHHHHHh
Q 043039 324 RMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPL-AVKTIGS 385 (949)
Q Consensus 324 ~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 385 (949)
..+ .....+++.+++.++....+...+...+.... .+.+..+++.++|.+- |+..+-.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is----~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE----DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 222 33568999999999999988887644332111 4456778888999664 4444443
No 89
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.31 E-value=2.4e-05 Score=80.15 Aligned_cols=172 Identities=17% Similarity=0.156 Sum_probs=99.2
Q ss_pred cccc-hhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHH
Q 043039 176 VCGR-NEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIE 254 (949)
Q Consensus 176 ~~Gr-~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 254 (949)
++|. ...+..+..+.... ..+.+.|+|+.|+|||+|++.+++... .....+.++++.....
T Consensus 25 ~~~~n~~a~~~l~~~~~~~------~~~~l~l~Gp~G~GKThLl~a~~~~~~--~~~~~v~y~~~~~~~~---------- 86 (235)
T PRK08084 25 YPGDNDSLLAALQNALRQE------HSGYIYLWSREGAGRSHLLHAACAELS--QRGRAVGYVPLDKRAW---------- 86 (235)
T ss_pred ccCccHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEEHHHHhh----------
Confidence 4463 33455555554321 235789999999999999999887532 2223456666543100
Q ss_pred hcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCc-ccHHH-HHHhhhcc-CCC-cEEEEEccch---------h
Q 043039 255 NLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDG-NKWES-FQRCLINA-HRG-SKILVTTRKE---------T 321 (949)
Q Consensus 255 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-~~~~~-l~~~l~~~-~~g-s~iivTtr~~---------~ 321 (949)
......+.+.+ --+|++||+..... ..|+. +...+... ..| .++|+||+.. .
T Consensus 87 ----------~~~~~~~~~~~-----~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~ 151 (235)
T PRK08084 87 ----------FVPEVLEGMEQ-----LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPD 151 (235)
T ss_pred ----------hhHHHHHHhhh-----CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHH
Confidence 00111111111 13889999965321 23443 33333221 223 4799999853 2
Q ss_pred hHhhhcCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHH
Q 043039 322 VARMIGSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIG 384 (949)
Q Consensus 322 v~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 384 (949)
+...+....++++.+++.++-.+++.+++...+- .--+++..-|++.+.|..-++..+-
T Consensus 152 L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~----~l~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 152 LASRLDWGQIYKLQPLSDEEKLQALQLRARLRGF----ELPEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred HHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHhhcCCHHHHHHHH
Confidence 3334444578999999999999999887643321 2235667778888877665554443
No 90
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.31 E-value=1e-06 Score=89.91 Aligned_cols=88 Identities=23% Similarity=0.146 Sum_probs=61.6
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCC--CCHHHHHHHHHHhcCCCCCCCcch------HHHHHH
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDP--FDVFRVWKAIIENLDGYTPDLGEL------NTLHQL 272 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~------~~~~~~ 272 (949)
-..++|+|++|+|||||++.++++.... +|+.++|+.+..+ +++.++++.+...+-....+.... ......
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999985444 8999999997766 899999999844432221111111 112222
Q ss_pred HHhh-hCCceEEEEEeCC
Q 043039 273 INNR-IGGKKVLLVLDDV 289 (949)
Q Consensus 273 l~~~-l~~~~~LlVlDdv 289 (949)
.... -.+++.++++|++
T Consensus 95 a~~~~~~G~~vll~iDei 112 (249)
T cd01128 95 AKRLVEHGKDVVILLDSI 112 (249)
T ss_pred HHHHHHCCCCEEEEEECH
Confidence 2222 2489999999999
No 91
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=1.8e-05 Score=85.43 Aligned_cols=197 Identities=15% Similarity=0.151 Sum_probs=116.4
Q ss_pred cCccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccc--cccceEEEEEeCCCCCHHHHHH
Q 043039 173 VSEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVS--NNFNVMIWVCVSDPFDVFRVWK 250 (949)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~ 250 (949)
...++|-++..+.+...+.... ..+.+.|+|+.|+||||+|..+.+..--. ..+... ....+..-....+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHH
Confidence 3468999999999999996542 45678999999999999998887641110 001111 0011111111222
Q ss_pred HHHHh-------cCCCC-C------CCcchHHHHHHHHhhh-----CCceEEEEEeCCCCCCcccHHHHHHhhhccCCCc
Q 043039 251 AIIEN-------LDGYT-P------DLGELNTLHQLINNRI-----GGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGS 311 (949)
Q Consensus 251 ~i~~~-------l~~~~-~------~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 311 (949)
.+... +..+. . ..-..+++. .+.+++ .+++-++|+|+++..+....+.+...+.....+.
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 22221 11000 0 011123322 233333 3566799999998887777788888876644455
Q ss_pred EEEEEc-cchhhHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHH
Q 043039 312 KILVTT-RKETVARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIG 384 (949)
Q Consensus 312 ~iivTt-r~~~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 384 (949)
.+|++| +...+...+ .....+.+.+++.++..+++.+..... . ...+....|++.++|.|.....+.
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~----~--~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ----G--SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc----C--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 555544 443333332 224689999999999999998743211 1 113446788999999998665443
No 92
>PRK09087 hypothetical protein; Validated
Probab=98.30 E-value=1.1e-05 Score=81.78 Aligned_cols=141 Identities=15% Similarity=0.148 Sum_probs=87.2
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCce
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKK 281 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 281 (949)
+.+.|+|+.|+|||+|++.++.... ..+++.. .+..+++..+ .+
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~~---------------------~~-- 88 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANAA---------------------AE-- 88 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHhh---------------------hc--
Confidence 5689999999999999999887521 1133321 1111111111 11
Q ss_pred EEEEEeCCCCCCcccHHHHHHhhhc-cCCCcEEEEEccc---------hhhHhhhcCcceEeCCCCChHhHHHHHHHHhh
Q 043039 282 VLLVLDDVWTEDGNKWESFQRCLIN-AHRGSKILVTTRK---------ETVARMIGSTCVISIEELSEPECWSLFKRFAF 351 (949)
Q Consensus 282 ~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtr~---------~~v~~~~~~~~~~~l~~l~~~~~~~l~~~~~~ 351 (949)
-+|++||+.... ..-+.+...+.. ...|..||+|++. +.....+....++++++++.++-.+++.+++.
T Consensus 89 ~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 89 GPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred CeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 278889995432 122334443322 2336679999874 33444455567999999999999999999885
Q ss_pred ccCCCCCchhHHHHHHHHHHhcCCCchHHHHH
Q 043039 352 LNRSRSDCKQLEEIGRKITWKCKGLPLAVKTI 383 (949)
Q Consensus 352 ~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 383 (949)
..+- .--+++..-|++++.|..-++..+
T Consensus 168 ~~~~----~l~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 168 DRQL----YVDPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HcCC----CCCHHHHHHHHHHhhhhHHHHHHH
Confidence 4322 122566777888887777666543
No 93
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=2.5e-05 Score=89.41 Aligned_cols=184 Identities=16% Similarity=0.206 Sum_probs=111.9
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccc-------------------cccceE
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVS-------------------NNFNVM 234 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~ 234 (949)
.+++|-+..++.+..++.... -.+.+.++|+.|+||||+|+.+.....-. +.|.-+
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 458999999999999986532 34667899999999999998886541100 011122
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEE
Q 043039 235 IWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKIL 314 (949)
Q Consensus 235 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 314 (949)
+++..+....+.. .+++++.... .-..+++-++|+|+++.......+.+...+......+.+|
T Consensus 91 ~ei~~~~~~~vd~-ir~l~~~~~~----------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fI 153 (527)
T PRK14969 91 IEVDAASNTQVDA-MRELLDNAQY----------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFI 153 (527)
T ss_pred eEeeccccCCHHH-HHHHHHHHhh----------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEE
Confidence 2232221111111 1112211110 1113566799999998776666777888876655666677
Q ss_pred EEccc-hhhHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCch-HHHHH
Q 043039 315 VTTRK-ETVARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPL-AVKTI 383 (949)
Q Consensus 315 vTtr~-~~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 383 (949)
++|.+ +.+...+ .....+++++++.++..+.+.+.+...+.. ...+....|++.++|.+- |+..+
T Consensus 154 L~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~----~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 154 LATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP----FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 66644 3332221 224688999999999998888766433221 124456778888999775 44443
No 94
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.25 E-value=2.7e-05 Score=77.13 Aligned_cols=90 Identities=14% Similarity=0.157 Sum_probs=65.0
Q ss_pred CceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccch-hhHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCC
Q 043039 279 GKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKE-TVARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSR 356 (949)
Q Consensus 279 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 356 (949)
+.+-++|+||+.......++.+...+....+.+.+|++|++. .+...+ .....+++.+++.++..+++.+..
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~g------ 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQG------ 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHcC------
Confidence 456689999997766566778888887666667777777653 332222 224689999999999998888761
Q ss_pred CCchhHHHHHHHHHHhcCCCch
Q 043039 357 SDCKQLEEIGRKITWKCKGLPL 378 (949)
Q Consensus 357 ~~~~~~~~~~~~i~~~~~g~Pl 378 (949)
.. .+.+..|++.++|.|.
T Consensus 169 i~----~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 169 IS----EEAAELLLALAGGSPG 186 (188)
T ss_pred CC----HHHHHHHHHHcCCCcc
Confidence 11 4567889999999885
No 95
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=4.1e-05 Score=83.15 Aligned_cols=192 Identities=13% Similarity=0.072 Sum_probs=113.5
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccc--cc------eEEEEEeCCCCCH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNN--FN------VMIWVCVSDPFDV 245 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--f~------~~~wv~~~~~~~~ 245 (949)
.+++|.++..+.+.+.+.... -.+.+.++|+.|+||+|+|..+.+..--... .. ...-+ .....
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~--~~~c~- 90 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAI--DPDHP- 90 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccC--CCCCh-
Confidence 468999999999999986543 3567899999999999999776543100000 00 00000 00000
Q ss_pred HHHHHHHHHh-------cCCC--CC-----CCcchHHHHHHHHhhh-----CCceEEEEEeCCCCCCcccHHHHHHhhhc
Q 043039 246 FRVWKAIIEN-------LDGY--TP-----DLGELNTLHQLINNRI-----GGKKVLLVLDDVWTEDGNKWESFQRCLIN 306 (949)
Q Consensus 246 ~~~~~~i~~~-------l~~~--~~-----~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~ 306 (949)
.-+.+... +... .. ..-..+++. .+.+.+ .+.+-++|+|+++..+....+.+...+..
T Consensus 91 --~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEe 167 (365)
T PRK07471 91 --VARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE 167 (365)
T ss_pred --HHHHHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhc
Confidence 01111100 0000 00 001123322 222222 25667999999988887778888888876
Q ss_pred cCCCcEEEEEccch-hhHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHH
Q 043039 307 AHRGSKILVTTRKE-TVARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIG 384 (949)
Q Consensus 307 ~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 384 (949)
-..++.+|++|.+. .+...+ .....+.+.+++.++..+++...... .. .+....++..++|.|.....+.
T Consensus 168 pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 168 PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-----LP---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-----CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 65667777777664 333332 23568999999999999999876421 11 1122678889999998665543
No 96
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.25 E-value=2.2e-05 Score=79.24 Aligned_cols=163 Identities=15% Similarity=0.217 Sum_probs=93.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGG 279 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 279 (949)
....+.|+|..|+|||.|.+++++.......-..++++++ .++...+...+... .. ..+.+.+++
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~------~~f~~~~~~~~~~~-----~~----~~~~~~~~~ 97 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA------EEFIREFADALRDG-----EI----EEFKDRLRS 97 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH------HHHHHHHHHHHHTT-----SH----HHHHHHHCT
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH------HHHHHHHHHHHHcc-----cc----hhhhhhhhc
Confidence 3446899999999999999999986322212224556554 34555555554431 12 223344443
Q ss_pred ceEEEEEeCCCCCCcc-cHHH-HHHhhhc-cCCCcEEEEEccch---------hhHhhhcCcceEeCCCCChHhHHHHHH
Q 043039 280 KKVLLVLDDVWTEDGN-KWES-FQRCLIN-AHRGSKILVTTRKE---------TVARMIGSTCVISIEELSEPECWSLFK 347 (949)
Q Consensus 280 ~~~LlVlDdv~~~~~~-~~~~-l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~l~~~~~~~l~~ 347 (949)
-=+|++||++..... .|.+ +...+.. ...|.+||+|++.. .+...+.....+++.+.+.++..+++.
T Consensus 98 -~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~ 176 (219)
T PF00308_consen 98 -ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQ 176 (219)
T ss_dssp -SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHH
T ss_pred -CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHH
Confidence 338899999654322 2322 3333322 23567899999652 233344455689999999999999999
Q ss_pred HHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHH
Q 043039 348 RFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKT 382 (949)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 382 (949)
+++...+-. --++++.-|++.+.+..-.+..
T Consensus 177 ~~a~~~~~~----l~~~v~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 177 KKAKERGIE----LPEEVIEYLARRFRRDVRELEG 207 (219)
T ss_dssp HHHHHTT------S-HHHHHHHHHHTTSSHHHHHH
T ss_pred HHHHHhCCC----CcHHHHHHHHHhhcCCHHHHHH
Confidence 988654332 2355666677777655544443
No 97
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.25 E-value=1.9e-05 Score=79.33 Aligned_cols=182 Identities=15% Similarity=0.216 Sum_probs=114.5
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEE-EEEeCCCCCHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMI-WVCVSDPFDVFRVWKAI 252 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~i 252 (949)
.+++|-+..+.-|.+.+... .......+|++|.|||+-|..+....--...|.+++ -.++|...... +
T Consensus 36 de~~gQe~vV~~L~~a~~~~------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-----v 104 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRR------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-----V 104 (346)
T ss_pred HhhcchHHHHHHHHHHHhhc------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-----c
Confidence 46899999999999998752 467889999999999999988776522233454333 23333322211 0
Q ss_pred HHhcCCCCCCCcchHHHHHHHHhhhC--Cce-EEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccch-hhHhhh-c
Q 043039 253 IENLDGYTPDLGELNTLHQLINNRIG--GKK-VLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKE-TVARMI-G 327 (949)
Q Consensus 253 ~~~l~~~~~~~~~~~~~~~~l~~~l~--~~~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~ 327 (949)
.+ ....+...+.....+... -++ -.||||+++....+.|..++..+......++.|+.+..- .+...+ .
T Consensus 105 vr------~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 105 VR------EKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred hh------hhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 00 001111111111111100 123 389999999988899999999998877777776666552 222222 2
Q ss_pred CcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCC
Q 043039 328 STCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGL 376 (949)
Q Consensus 328 ~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 376 (949)
....+..++|..++...-+...+-.++...+ .+..+.|++.++|-
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d----~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGVDID----DDALKLIAKISDGD 223 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCc
Confidence 2457889999999999988888765544333 45566788888774
No 98
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=2.5e-05 Score=86.73 Aligned_cols=199 Identities=12% Similarity=0.132 Sum_probs=111.9
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEE-eCCCCCHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVC-VSDPFDVFRVWKAI 252 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 252 (949)
.+++|.+..++.|..++.... -.+.+.++|+.|+||||+|..+.+...-...+....|.. ...+...-..-+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 468999999999999886432 245688999999999999988876421111010000000 00000000111111
Q ss_pred HHhcCC-----CCCCCcchHHHHHHHHhh----hCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEcc-chhh
Q 043039 253 IENLDG-----YTPDLGELNTLHQLINNR----IGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTR-KETV 322 (949)
Q Consensus 253 ~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v 322 (949)
...... ........+.+.+..... ..+++-++|+|++.......++.+...+....+.+.+|++|. ...+
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 100000 000111122222221111 224556899999977665678888888876666777666553 3444
Q ss_pred Hhhhc-CcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHH
Q 043039 323 ARMIG-STCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVK 381 (949)
Q Consensus 323 ~~~~~-~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 381 (949)
...+. ....+++.++++++..+.+...+-..+. .-..+.+..|++.++|.+--+.
T Consensus 171 ~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~----~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 171 PATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI----SVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 33222 2357899999999998888877643221 1225667888999999775443
No 99
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.24 E-value=3.3e-05 Score=79.17 Aligned_cols=197 Identities=17% Similarity=0.106 Sum_probs=121.6
Q ss_pred hhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccc----cccceEEEEEeCCCCCHHHHHHHHHHh
Q 043039 180 NEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVS----NNFNVMIWVCVSDPFDVFRVWKAIIEN 255 (949)
Q Consensus 180 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~ 255 (949)
.+.++++.++|..+. ....+.+.|+|..|+|||++++++....... ..--.|+.|.+...++...++..|+.+
T Consensus 43 ~~~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~ 119 (302)
T PF05621_consen 43 KEALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEA 119 (302)
T ss_pred HHHHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHH
Confidence 355777777776553 3455679999999999999999987642111 111257788888999999999999999
Q ss_pred cCCCCCCCcchHHHHHHHHhhhCC-ceEEEEEeCCCCC---CcccHHH---HHHhhhccCCCcEEEEEccchhhHhh---
Q 043039 256 LDGYTPDLGELNTLHQLINNRIGG-KKVLLVLDDVWTE---DGNKWES---FQRCLINAHRGSKILVTTRKETVARM--- 325 (949)
Q Consensus 256 l~~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~---~~~~~~~---l~~~l~~~~~gs~iivTtr~~~v~~~--- 325 (949)
++.+.........+...+...++. +-=+||+|++.+. ...+... ....+.+.-.=+-|.|-|+.---+-.
T Consensus 120 lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~ 199 (302)
T PF05621_consen 120 LGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDP 199 (302)
T ss_pred hCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCH
Confidence 998876666666666665555552 2338999999652 1112222 23333333344556666664221111
Q ss_pred --hcCcceEeCCCCChH-hHHHHHHHHhhccCC-CCCchhHHHHHHHHHHhcCCCchH
Q 043039 326 --IGSTCVISIEELSEP-ECWSLFKRFAFLNRS-RSDCKQLEEIGRKITWKCKGLPLA 379 (949)
Q Consensus 326 --~~~~~~~~l~~l~~~-~~~~l~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~g~Pla 379 (949)
.+...++.+.....+ +...|+......-.- ....-...+++..|...++|+.=-
T Consensus 200 QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~ 257 (302)
T PF05621_consen 200 QLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGE 257 (302)
T ss_pred HHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHH
Confidence 112346677776654 445555443221110 112234577899999999998733
No 100
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=3.7e-05 Score=88.66 Aligned_cols=197 Identities=14% Similarity=0.157 Sum_probs=115.4
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccc--eEEEEEeCCCCCHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFN--VMIWVCVSDPFDVFRVWKA 251 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~ 251 (949)
.+++|.+..++.|.+++.... -.+.+.++|+.|+||||+|+.+.+...-..... ...+-.+... ..-+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c----~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG----EHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc----HHHHH
Confidence 468999999999999996532 345788999999999999998876421110000 0000000000 00111
Q ss_pred HHHhc-------CC-CCCCCcchHHHHHHHHhh-hCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEcc-chh
Q 043039 252 IIENL-------DG-YTPDLGELNTLHQLINNR-IGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTR-KET 321 (949)
Q Consensus 252 i~~~l-------~~-~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~ 321 (949)
|...- .. ......+..++.+.+... ..+++-++|+|++........+.+...+..-..++++|++|. .+.
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 11110 00 001112222232222211 224455899999977766667778888877666777766553 344
Q ss_pred hHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHH
Q 043039 322 VARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTI 383 (949)
Q Consensus 322 v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 383 (949)
+...+ .....+++..++.++....+.+.+...+... ..+....|++.++|.+.-+...
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i----~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV----EDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 43333 2356899999999999999988765433222 2356678888999988655443
No 101
>PRK05642 DNA replication initiation factor; Validated
Probab=98.22 E-value=4.8e-05 Score=77.82 Aligned_cols=154 Identities=16% Similarity=0.187 Sum_probs=92.4
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCce
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKK 281 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 281 (949)
..+.|+|..|+|||.|++.+++... ..-..++|++..+ +... .. .+.+.+++-.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~--~~~~~v~y~~~~~------~~~~--------------~~----~~~~~~~~~d 99 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFE--QRGEPAVYLPLAE------LLDR--------------GP----ELLDNLEQYE 99 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEeeHHH------HHhh--------------hH----HHHHhhhhCC
Confidence 5789999999999999999987522 1223466776542 1110 01 1222222222
Q ss_pred EEEEEeCCCCCC-cccHHH-HHHhhhc-cCCCcEEEEEccchhh---------HhhhcCcceEeCCCCChHhHHHHHHHH
Q 043039 282 VLLVLDDVWTED-GNKWES-FQRCLIN-AHRGSKILVTTRKETV---------ARMIGSTCVISIEELSEPECWSLFKRF 349 (949)
Q Consensus 282 ~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTtr~~~v---------~~~~~~~~~~~l~~l~~~~~~~l~~~~ 349 (949)
++|+||+.... ...|.. +...+.. ..+|.+||+|++...- ...+....++++.+++.++-.+++..+
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 68899996432 134443 4444432 2346679998875322 122233467899999999999999977
Q ss_pred hhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHHhh
Q 043039 350 AFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIGSL 386 (949)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 386 (949)
+...+-. --.++..-|++++.|-.-++..+-..
T Consensus 179 a~~~~~~----l~~ev~~~L~~~~~~d~r~l~~~l~~ 211 (234)
T PRK05642 179 ASRRGLH----LTDEVGHFILTRGTRSMSALFDLLER 211 (234)
T ss_pred HHHcCCC----CCHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 6543211 12567777888887776555544433
No 102
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.22 E-value=2.4e-05 Score=83.11 Aligned_cols=224 Identities=14% Similarity=0.091 Sum_probs=134.2
Q ss_pred ccCccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHH
Q 043039 172 NVSEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKA 251 (949)
Q Consensus 172 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 251 (949)
.+..++||+.++..+.+|+...- +....+.+.|.|.+|.|||.+...++.+......--.++++.+..-.....++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hl--e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHL--ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhh--hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 45679999999999999987544 2345678899999999999999999987432222235677777766777788888
Q ss_pred HHHhcCCCCCCCcchHHHHHHHHhhhCC--ceEEEEEeCCCCCCcccHHHHHHhhh-ccCCCcEEEEEccc------hhh
Q 043039 252 IIENLDGYTPDLGELNTLHQLINNRIGG--KKVLLVLDDVWTEDGNKWESFQRCLI-NAHRGSKILVTTRK------ETV 322 (949)
Q Consensus 252 i~~~l~~~~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~~~~~~l~~~l~-~~~~gs~iivTtr~------~~v 322 (949)
|...+...........+..+.+.++..+ ..+|+|+|..+.-.......+...|. +.-+++|+|+.--- +..
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 8777621111111113444555555543 36899999985432222222222222 22355665553221 111
Q ss_pred Hhhh-----cCcceEeCCCCChHhHHHHHHHHhhccCCC-CCchhHHHHHHHHHHhcCCCchHHHHHHhhhccCCCHHHH
Q 043039 323 ARMI-----GSTCVISIEELSEPECWSLFKRFAFLNRSR-SDCKQLEEIGRKITWKCKGLPLAVKTIGSLLRFKKAREEW 396 (949)
Q Consensus 323 ~~~~-----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w 396 (949)
...+ -....+...+-+.++..++|..+.-..... ..+..++-.|++++...|.+--|+.+.-+.+. -...+|
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiE--I~E~e~ 383 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIE--IAEIEK 383 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHH--HHHHHH
Confidence 1111 124578889999999999999987543322 12234555555555555666666666555442 123455
Q ss_pred HHH
Q 043039 397 QSI 399 (949)
Q Consensus 397 ~~~ 399 (949)
+..
T Consensus 384 r~~ 386 (529)
T KOG2227|consen 384 RKI 386 (529)
T ss_pred hhc
Confidence 555
No 103
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=5.8e-05 Score=86.49 Aligned_cols=186 Identities=13% Similarity=0.139 Sum_probs=115.3
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCccccccc---------------------c
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNF---------------------N 232 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---------------------~ 232 (949)
.+++|.+..++.|.+++.... -.+.+.++|+.|+||||+|+.+.+...-.... .
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~ 87 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSI 87 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCc
Confidence 468999999999999996532 34678899999999999998887641100000 0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhh-hCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCc
Q 043039 233 VMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNR-IGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGS 311 (949)
Q Consensus 233 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 311 (949)
.++.+..+... ..++..++.+.+... ..+++-++|+|++........+.+...+..-....
T Consensus 88 dvieidaas~~------------------gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~ 149 (584)
T PRK14952 88 DVVELDAASHG------------------GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHL 149 (584)
T ss_pred eEEEecccccc------------------CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCe
Confidence 11122211111 112222222222211 12455589999998877777888888887766666
Q ss_pred EEEEEcc-chhhHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCch-HHHHHHhh
Q 043039 312 KILVTTR-KETVARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPL-AVKTIGSL 386 (949)
Q Consensus 312 ~iivTtr-~~~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~~ 386 (949)
.+|++|. ...+...+ .....+++..++.++..+.+.+.+...+...+ .+....|++.++|.+- |+..+-.+
T Consensus 150 ~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~----~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 150 IFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD----DAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred EEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 6666554 34444332 23568999999999999888877654332122 3456778888998774 44444433
No 104
>PLN03150 hypothetical protein; Provisional
Probab=98.20 E-value=3.4e-06 Score=99.30 Aligned_cols=103 Identities=20% Similarity=0.369 Sum_probs=55.3
Q ss_pred ceEEEecCCCCC-CcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCc-ccchhhcCCCCCcEEee
Q 043039 566 LRSLLIQGYSLQ-HMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIE-ELPETFCELFNLQNLDL 643 (949)
Q Consensus 566 Lr~L~l~~~~l~-~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~-~lp~~l~~L~~L~~L~L 643 (949)
++.|+|++|.+. .+|..+..+++|+.|+|++|.. ...+|..++.+++|++|+|++|.+. .+|..+++|++|++|+|
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l--~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSI--RGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcc--cCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 455555555554 3455555556666666665552 2245555556666666666666554 45555566666666666
Q ss_pred cCCCCCCccccccccC-CCCCeeeCCCc
Q 043039 644 RRCSKFKRLPQNIGKL-VNLRHLIFDED 670 (949)
Q Consensus 644 ~~~~~l~~lp~~i~~L-~~L~~L~l~~~ 670 (949)
++|.....+|..++.+ .++..+++.+|
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCC
Confidence 6555444555555432 23444444433
No 105
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=4.9e-05 Score=86.68 Aligned_cols=187 Identities=14% Similarity=0.178 Sum_probs=114.6
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCccccccc-------------------ceE
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNF-------------------NVM 234 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-------------------~~~ 234 (949)
.+++|-+..++.|.+.+.... -.+.+.++|+.|+||||+|+.+.+...-.... .-+
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv 90 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDV 90 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCce
Confidence 458899988899998886432 24678899999999999999887652110000 002
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHh-hhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEE
Q 043039 235 IWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINN-RIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKI 313 (949)
Q Consensus 235 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 313 (949)
+++.......+ .+.+.+.+.+.. -..+++-+||+|++.......++.+...+........+
T Consensus 91 ~eId~a~~~~I------------------d~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~if 152 (624)
T PRK14959 91 VEIDGASNRGI------------------DDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTF 152 (624)
T ss_pred EEEecccccCH------------------HHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEE
Confidence 22221111111 111222222211 12355679999999877666677788877654445666
Q ss_pred EEEccc-hhhHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCc-hHHHHHHhhh
Q 043039 314 LVTTRK-ETVARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLP-LAVKTIGSLL 387 (949)
Q Consensus 314 ivTtr~-~~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~~~l 387 (949)
|++|.. ..+...+ .....+++.+++.++....+...+...+.. -..+.++.|++.++|.+ .|+..+...+
T Consensus 153 ILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~----id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 153 VLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD----YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred EEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 665554 4443332 234588999999999999998876543321 22456677888898865 6777665444
No 106
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=3.7e-05 Score=89.65 Aligned_cols=195 Identities=13% Similarity=0.170 Sum_probs=114.0
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAII 253 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 253 (949)
.+++|.+..++.|..++.... -.+.+.++|+.|+||||+|+.+.+...-..... -....+.....+.|.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 468999999999999886432 345778999999999999998876421000000 000111112222222
Q ss_pred HhcCCC--------CCCCcchHHHHHHHHhh-hCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccc-hhhH
Q 043039 254 ENLDGY--------TPDLGELNTLHQLINNR-IGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRK-ETVA 323 (949)
Q Consensus 254 ~~l~~~--------~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 323 (949)
...... .....+..++.+.+... ..+++-++|+|++........+.+...+......+.+|++|.+ ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 211100 00011122222222211 1245668999999766556677787777665566777766644 3333
Q ss_pred hhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHH
Q 043039 324 RMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTI 383 (949)
Q Consensus 324 ~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 383 (949)
..+ .....+.+..++.++....+...+...+... ..+.+..|++.++|.+..+...
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i----~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINL----EPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 322 2245788999999999988888765433211 2456778889999988655443
No 107
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.15 E-value=3.3e-06 Score=65.84 Aligned_cols=57 Identities=28% Similarity=0.443 Sum_probs=34.5
Q ss_pred ceeEEEeCCccccccccccc-cccCCCCCCeeeecccCCcccc-hhhcCCCCCcEEeecCCC
Q 043039 588 CLRALRIGKYGDDAIERIPN-GIEKLIHLRYLKLFFVGIEELP-ETFCELFNLQNLDLRRCS 647 (949)
Q Consensus 588 ~Lr~L~L~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp-~~l~~L~~L~~L~L~~~~ 647 (949)
+|++|++++|. +..+|. .+.++++|++|++++|.++.+| ..+..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~---l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNK---LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSST---ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCC---CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666665 555553 4556666666666666666654 345666666666666654
No 108
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.14 E-value=4.6e-06 Score=88.42 Aligned_cols=99 Identities=19% Similarity=0.114 Sum_probs=65.9
Q ss_pred HHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCC--CHHHHHHHHHHhcCCCCCC
Q 043039 185 ALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPF--DVFRVWKAIIENLDGYTPD 262 (949)
Q Consensus 185 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~ 262 (949)
++++.+..-. .-+..+|+|++|+||||||+.+|++.... +|+..+||.+.+.. .+.++++.+...+-....+
T Consensus 158 rvID~l~PIG-----kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d 231 (416)
T PRK09376 158 RIIDLIAPIG-----KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFD 231 (416)
T ss_pred eeeeeecccc-----cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCC
Confidence 4566654322 33467899999999999999999975444 89999999998887 7888888886433222222
Q ss_pred CcchH------HHHHHHHhh-hCCceEEEEEeCC
Q 043039 263 LGELN------TLHQLINNR-IGGKKVLLVLDDV 289 (949)
Q Consensus 263 ~~~~~------~~~~~l~~~-l~~~~~LlVlDdv 289 (949)
..... ......+.. -.+++++|++|++
T Consensus 232 ~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsI 265 (416)
T PRK09376 232 EPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSI 265 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEECh
Confidence 11111 111112222 2589999999999
No 109
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=8.8e-05 Score=88.59 Aligned_cols=179 Identities=12% Similarity=0.114 Sum_probs=113.0
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccc----------------------ccc
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVS----------------------NNF 231 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----------------------~~f 231 (949)
.+++|.+..++.|..++.... -.+.+.++|+.|+||||+|+.+.+...-. .++
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 468999999999999997532 34678899999999999998886542100 011
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHH-hhhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCC
Q 043039 232 NVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLIN-NRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRG 310 (949)
Q Consensus 232 ~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 310 (949)
+ ++++.......+ ++...+.+.+. .-..+++-++|||+++......++.|...+..-...
T Consensus 90 d-v~eidaas~~~V------------------d~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~ 150 (824)
T PRK07764 90 D-VTEIDAASHGGV------------------DDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEH 150 (824)
T ss_pred c-EEEecccccCCH------------------HHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCC
Confidence 1 122222111111 12222222111 122355558999999888777888888888776667
Q ss_pred cEEEEEccc-hhhHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHH
Q 043039 311 SKILVTTRK-ETVARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAV 380 (949)
Q Consensus 311 s~iivTtr~-~~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 380 (949)
+.+|++|.+ ..+...+ .....|++..++.++..+++.+.+-..+.. ...+....|++.++|.+..+
T Consensus 151 ~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~----id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 151 LKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP----VEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred eEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 777766644 3444433 235689999999999988888765333221 12344567888899987433
No 110
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.13 E-value=3.7e-06 Score=88.46 Aligned_cols=235 Identities=23% Similarity=0.232 Sum_probs=152.2
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCccccccc-ceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVSNNF-NVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIG 278 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 278 (949)
..+.+.++|.|||||||++-++.. ...-| +.+.++....-.+...+.-.+...++..... -+.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHh
Confidence 457899999999999999988887 34456 5677777777777777666666666654322 1223344555667
Q ss_pred CceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccchhhHhhhcCcceEeCCCCChH-hHHHHHHHHhhccCCC-
Q 043039 279 GKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKETVARMIGSTCVISIEELSEP-ECWSLFKRFAFLNRSR- 356 (949)
Q Consensus 279 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~~l~~~-~~~~l~~~~~~~~~~~- 356 (949)
++|.++|+||..+.- +.-..+...+..+...-.|+.|+|..... .......+.+|+.. ++.++|...+......
T Consensus 87 ~rr~llvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHLL-DACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccce
Confidence 789999999984321 12222333344445555788888875433 34556777777765 7888888776432221
Q ss_pred CCchhHHHHHHHHHHhcCCCchHHHHHHhhhccCCCHHHHHHHHhhhccchh-------hhccchHHHHHhccCCCChhH
Q 043039 357 SDCKQLEEIGRKITWKCKGLPLAVKTIGSLLRFKKAREEWQSILDSEIWQVE-------EFEKNLLPALLLSYNDLPNEI 429 (949)
Q Consensus 357 ~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~l~~~~~~~~-------~~~~~i~~~l~~sy~~L~~~~ 429 (949)
.-...-.....+|.++..|.|++|..+++..+.- ...+-.+.+......+. --.....+.+.+||.-|....
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 1122335567789999999999999999888642 22222222222111111 112456789999999999988
Q ss_pred HHHHhhhcccCCCccc
Q 043039 430 KRCFSYCAVLPKECYV 445 (949)
Q Consensus 430 k~cf~~~a~fp~~~~i 445 (949)
+.-|.-++.|...+..
T Consensus 242 ~~~~~rLa~~~g~f~~ 257 (414)
T COG3903 242 RALFGRLAVFVGGFDL 257 (414)
T ss_pred HHHhcchhhhhhhhcc
Confidence 8888888888766543
No 111
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.12 E-value=2.4e-05 Score=86.23 Aligned_cols=181 Identities=12% Similarity=0.132 Sum_probs=99.9
Q ss_pred ccCccccchhHHHHHHHHHccCCCC-------CCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCC
Q 043039 172 NVSEVCGRNEEKNALKGKLLSETAE-------QPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFD 244 (949)
Q Consensus 172 ~~~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 244 (949)
...++.|+++.+++|.+.+...-.. +-...+-+.++|++|+|||++|+.+++. ....| +.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~--- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG--- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch---
Confidence 3456899999999999877432110 0123456899999999999999999986 33333 22211
Q ss_pred HHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCC-----------cccHHHHHHhh---hc--cC
Q 043039 245 VFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTED-----------GNKWESFQRCL---IN--AH 308 (949)
Q Consensus 245 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----------~~~~~~l~~~l---~~--~~ 308 (949)
.. +.....+ .....+...+...-...+.+|++|+++... ......+...+ .. ..
T Consensus 190 -~~----l~~~~~g-----~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 190 -SE----LVRKYIG-----EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred -HH----HHHHhhh-----HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 11 1111100 011111222222223567899999996421 11122233333 11 13
Q ss_pred CCcEEEEEccchhhHh-hh----cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCc
Q 043039 309 RGSKILVTTRKETVAR-MI----GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLP 377 (949)
Q Consensus 309 ~gs~iivTtr~~~v~~-~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 377 (949)
.+.+||.||....... .+ .....+.+...+.++..++|..++...... .... ...+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCC----HHHHHHHcCCCC
Confidence 4667888887543221 11 124578999999999999999887543221 1122 345566676654
No 112
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.11 E-value=1.4e-05 Score=86.88 Aligned_cols=119 Identities=12% Similarity=0.085 Sum_probs=76.8
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAII 253 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 253 (949)
.++++.++..+.+...|... +.+.++|++|+|||++|+.+++.......|+.+.||.++..++..+++..+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 45788899999999998643 3678899999999999999988644445678899999999888766554321
Q ss_pred HhcCCCCCCCc-chHHHHHHHHhhh--CCceEEEEEeCCCCCCccc-HHHHHHhh
Q 043039 254 ENLDGYTPDLG-ELNTLHQLINNRI--GGKKVLLVLDDVWTEDGNK-WESFQRCL 304 (949)
Q Consensus 254 ~~l~~~~~~~~-~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~~~~-~~~l~~~l 304 (949)
- ....-. ......+.+.+.- .++++++|+|++...+.+. +.++...+
T Consensus 247 P----~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lL 297 (459)
T PRK11331 247 P----NGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLM 297 (459)
T ss_pred C----CCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhc
Confidence 1 000000 0111222233322 2468999999996654332 34444433
No 113
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=0.00017 Score=81.45 Aligned_cols=179 Identities=15% Similarity=0.161 Sum_probs=113.6
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcc----cc----------------cccce
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDAD----VS----------------NNFNV 233 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~----~~----------------~~f~~ 233 (949)
.+++|-+...+.|...+.... -.++..++|+.|+||||+|+.+.+..- .. .|++
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d- 87 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID- 87 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-
Confidence 458999999999999986432 346778999999999999987765310 00 0111
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHh----hhCCceEEEEEeCCCCCCcccHHHHHHhhhccCC
Q 043039 234 MIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINN----RIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHR 309 (949)
Q Consensus 234 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 309 (949)
++++..+.... .+.+.+.+.. -..+++-++|+|++........+.+...+.....
T Consensus 88 v~eldaas~~g---------------------Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~ 146 (535)
T PRK08451 88 IIEMDAASNRG---------------------IDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPS 146 (535)
T ss_pred EEEeccccccC---------------------HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCC
Confidence 22222111111 2222222221 0114556899999988776777888888876666
Q ss_pred CcEEEEEccch-hhHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHH
Q 043039 310 GSKILVTTRKE-TVARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTI 383 (949)
Q Consensus 310 gs~iivTtr~~-~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 383 (949)
.+++|++|.+. .+...+ .....+++.+++.++....+.+.+...+... ..+.+..|++.++|.+.-+..+
T Consensus 147 ~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i----~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 147 YVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY----EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred ceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCcHHHHHHH
Confidence 77777777653 222222 2256899999999999998887765433222 2456778888999988554443
No 114
>PLN03150 hypothetical protein; Provisional
Probab=98.10 E-value=5e-06 Score=97.89 Aligned_cols=100 Identities=27% Similarity=0.407 Sum_probs=84.7
Q ss_pred ceeEEEeCCccccccccccccccCCCCCCeeeecccCCc-ccchhhcCCCCCcEEeecCCCCCCccccccccCCCCCeee
Q 043039 588 CLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIE-ELPETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLI 666 (949)
Q Consensus 588 ~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~-~lp~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 666 (949)
.++.|+|++|.. ...+|..++++++|++|+|++|.+. .+|..++.+++|+.|+|++|.....+|..+++|++|++|+
T Consensus 419 ~v~~L~L~~n~L--~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGL--RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCc--cccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 478899999883 3468889999999999999999987 7899999999999999999997778999999999999999
Q ss_pred CCCcccc-cCCcCCCCC-CCCcccC
Q 043039 667 FDEDDLD-YMPKGMGSL-TGLRTLS 689 (949)
Q Consensus 667 l~~~~l~-~~p~~i~~l-~~L~~L~ 689 (949)
+++|.+. .+|..++.+ .++..++
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~ 521 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFN 521 (623)
T ss_pred CcCCcccccCChHHhhccccCceEE
Confidence 9999887 677777653 3444444
No 115
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=0.00014 Score=80.54 Aligned_cols=180 Identities=15% Similarity=0.229 Sum_probs=105.8
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccc------cccce-EEEEEeCCCCCHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVS------NNFNV-MIWVCVSDPFDVF 246 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~------~~f~~-~~wv~~~~~~~~~ 246 (949)
.+++|.+..++.+...+.... -.+.+.++|++|+||||+|+.+.+...-. ..|.. ++.+.......+
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~- 90 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV- 90 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-
Confidence 458999999999999986432 34688899999999999999887642110 11111 111111110111
Q ss_pred HHHHHHHHhcCCCCCCCcchHHHHHHHHh-hhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccc-hhhHh
Q 043039 247 RVWKAIIENLDGYTPDLGELNTLHQLINN-RIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRK-ETVAR 324 (949)
Q Consensus 247 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~ 324 (949)
.+...+.+.+.. -..+++-++|+|++.......++.+...+......+.+|++|.. ..+..
T Consensus 91 -----------------~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~ 153 (367)
T PRK14970 91 -----------------DDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153 (367)
T ss_pred -----------------HHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCH
Confidence 111111111111 11244558999999765545566777666554445566665543 23322
Q ss_pred hh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHH
Q 043039 325 MI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAV 380 (949)
Q Consensus 325 ~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 380 (949)
.+ .....+++.++++++....+...+...+..- ..+.+..+++.++|.+-.+
T Consensus 154 ~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i----~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 154 TILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKF----EDDALHIIAQKADGALRDA 206 (367)
T ss_pred HHHhcceeEecCCccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHhCCCCHHHH
Confidence 22 2345789999999999999988775433211 2456777888888866533
No 116
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.10 E-value=4e-06 Score=65.35 Aligned_cols=59 Identities=29% Similarity=0.462 Sum_probs=52.4
Q ss_pred CCceEEEecCCCCCCcch-hhccCCceeEEEeCCccccccccccc-cccCCCCCCeeeecccCC
Q 043039 564 KKLRSLLIQGYSLQHMPS-FFDQLTCLRALRIGKYGDDAIERIPN-GIEKLIHLRYLKLFFVGI 625 (949)
Q Consensus 564 ~~Lr~L~l~~~~l~~l~~-~~~~l~~Lr~L~L~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~i 625 (949)
++|++|++++|.++.+|. .|.++++|++|++++|. +..++. .+.++++|++|++++|.|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~---l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN---LTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS---ESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc---cCccCHHHHcCCCCCCEEeCcCCcC
Confidence 578999999999999874 78999999999999998 777764 689999999999999975
No 117
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.10 E-value=4.6e-05 Score=85.53 Aligned_cols=169 Identities=17% Similarity=0.100 Sum_probs=103.3
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCc
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGK 280 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 280 (949)
...+.|+|..|+|||+|++++.+.......-..+++++. .++...+...+.... .....+.+.++.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~~-------~~~~~~~~~~~~- 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKTH-------KEIEQFKNEICQ- 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHhh-------hHHHHHHHHhcc-
Confidence 346899999999999999999885222122233455544 356666666554210 112233333333
Q ss_pred eEEEEEeCCCCCCc--ccHHHHHHhhhc-cCCCcEEEEEccch---------hhHhhhcCcceEeCCCCChHhHHHHHHH
Q 043039 281 KVLLVLDDVWTEDG--NKWESFQRCLIN-AHRGSKILVTTRKE---------TVARMIGSTCVISIEELSEPECWSLFKR 348 (949)
Q Consensus 281 ~~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~l~~~~~~~l~~~ 348 (949)
.-+||+||+..... ...+.+...+.. ...|..||+|+... .+...+...-++++++++.++..+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 34888999965431 122334444432 23455788887642 2223334455788999999999999999
Q ss_pred HhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHHh
Q 043039 349 FAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIGS 385 (949)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 385 (949)
++-..+. ...--.++..-|++.++|.|-.+..+..
T Consensus 287 ~~~~~gl--~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 287 EIKNQNI--KQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHhcCC--CCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 8854321 0123367788899999999987766553
No 118
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=0.00021 Score=80.87 Aligned_cols=183 Identities=14% Similarity=0.188 Sum_probs=110.6
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcc----cc---------------cccceE
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDAD----VS---------------NNFNVM 234 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~----~~---------------~~f~~~ 234 (949)
.+++|.+..++.+.+++.... -.+.+.++|+.|+||||+|+.+..... .. +.|..+
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 358899999999999996532 345678899999999999988766311 00 011112
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHh-hhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEE
Q 043039 235 IWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINN-RIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKI 313 (949)
Q Consensus 235 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 313 (949)
+++..+.... ..+.+.+.+.+.. -..+++-++|+|+++.......+.+...+....+...+
T Consensus 91 ~eidaas~~g------------------vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 91 IEIDAASNRG------------------IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEEeCccCCC------------------HHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 2222211111 1112222222221 12356679999999776555677777777665556666
Q ss_pred EEEccc-hhhHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHH
Q 043039 314 LVTTRK-ETVARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTI 383 (949)
Q Consensus 314 ivTtr~-~~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 383 (949)
|++|.. ..+...+ .....+.+.+++.++....+.+.+-..+... ..+.+..|++.++|.+..+...
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i----d~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY----EEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 665543 3333222 2345889999999999988888764433222 2355677888899977644443
No 119
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=0.00015 Score=84.21 Aligned_cols=182 Identities=16% Similarity=0.193 Sum_probs=111.0
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCccccc-----------------ccceEEE
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSN-----------------NFNVMIW 236 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-----------------~f~~~~w 236 (949)
.+++|.+..++.|..++.... -.+.+.++|+.|+||||+|+.+....--.. +++ +++
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~D-vie 91 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLD-IIE 91 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCc-EEE
Confidence 458999999999999996532 356778999999999999988865310000 000 111
Q ss_pred EEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhh-hCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEE
Q 043039 237 VCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNR-IGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILV 315 (949)
Q Consensus 237 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv 315 (949)
+..... ....+.+.+.+.+... ..+++-++|+|++.......+..+...+......+.+|+
T Consensus 92 idaasn------------------~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifIL 153 (725)
T PRK07133 92 MDAASN------------------NGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFIL 153 (725)
T ss_pred Eecccc------------------CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEE
Confidence 111000 0111222333332221 235666999999987766678888877766555555555
Q ss_pred Ec-cchhhHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCch-HHHHH
Q 043039 316 TT-RKETVARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPL-AVKTI 383 (949)
Q Consensus 316 Tt-r~~~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 383 (949)
+| +...+...+ .....+++.+++.++....+...+...+... ..+.+..|++.++|.+- |+..+
T Consensus 154 aTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i----d~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 154 ATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISY----EKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred EcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 55 444444332 3356899999999999988887654333211 13456778889988764 44433
No 120
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=9.8e-05 Score=85.32 Aligned_cols=194 Identities=13% Similarity=0.196 Sum_probs=109.6
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEE-eCCCCCHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVC-VSDPFDVFRVWKAI 252 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 252 (949)
.+++|-+..+..|.+++.... -.+.+.++|+.|+||||+|+.+.+...-...++...|.. +......-..-+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 468999999999999886432 345688999999999999988765421111010000100 00000000111111
Q ss_pred HHh-------cCCCCCCCcchHHHHHHHHhh----hCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEcc-ch
Q 043039 253 IEN-------LDGYTPDLGELNTLHQLINNR----IGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTR-KE 320 (949)
Q Consensus 253 ~~~-------l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~ 320 (949)
... +.+ ......+++.+.+... ..+++-++|+|+++.......+.+...+..-...+.+|++|. ..
T Consensus 91 ~~g~~~n~~~~d~--~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~ 168 (620)
T PRK14954 91 DAGTSLNISEFDA--ASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELH 168 (620)
T ss_pred hccCCCCeEEecc--cccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChh
Confidence 000 000 0111122332222211 234455899999977666667778888766555666665554 34
Q ss_pred hhHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCch
Q 043039 321 TVARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPL 378 (949)
Q Consensus 321 ~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 378 (949)
.+...+ .....+++.+++.++....+.+.+...+.. -..+.++.|++.++|..-
T Consensus 169 kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~----I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 169 KIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ----IDADALQLIARKAQGSMR 223 (620)
T ss_pred hhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHhCCCHH
Confidence 443332 335689999999999888887766432221 124567788889999554
No 121
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.06 E-value=5.9e-05 Score=81.84 Aligned_cols=148 Identities=14% Similarity=0.180 Sum_probs=87.7
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAII 253 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 253 (949)
.+++|.++..+.+..++... .-.+++.++|++|+||||+|+.+++.. .. .+..++.+. .... ..++.+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~~--~~---~~~~i~~~~-~~~~-~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNEV--GA---EVLFVNGSD-CRID-FVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHh--Cc---cceEeccCc-ccHH-HHHHHH
Confidence 56899999999999998642 235688889999999999999998752 11 233444443 2211 111111
Q ss_pred HhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCC-CcccHHHHHHhhhccCCCcEEEEEccchh-hHhhh-cCcc
Q 043039 254 ENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTE-DGNKWESFQRCLINAHRGSKILVTTRKET-VARMI-GSTC 330 (949)
Q Consensus 254 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~-~~~~ 330 (949)
..... . ..+.+.+-++|+|++... .......+...+.....++++|+||.... +...+ ....
T Consensus 89 ~~~~~-------------~--~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 89 TRFAS-------------T--VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred HHHHH-------------h--hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 11000 0 001134558999999755 22233445555555566788999887532 11111 2234
Q ss_pred eEeCCCCChHhHHHHHHH
Q 043039 331 VISIEELSEPECWSLFKR 348 (949)
Q Consensus 331 ~~~l~~l~~~~~~~l~~~ 348 (949)
.+.+...+.++..+++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 677777778777766554
No 122
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=3.6e-06 Score=83.52 Aligned_cols=226 Identities=16% Similarity=0.103 Sum_probs=118.3
Q ss_pred EEEecCCCCCCcch---hhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccchhh-cCCCCCcEEee
Q 043039 568 SLLIQGYSLQHMPS---FFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPETF-CELFNLQNLDL 643 (949)
Q Consensus 568 ~L~l~~~~l~~l~~---~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l-~~L~~L~~L~L 643 (949)
.|.+.++.+....+ +-..++.++.|||.+|......++-.-+.+|++|++|+|++|.+..-..++ -.+.+|++|-|
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVL 128 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVL 128 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEE
Confidence 44455555543322 124566677777777763222333333557777777777777654222222 24556777777
Q ss_pred cCCCC-CCccccccccCCCCCeeeCCCcccccCCcCCCCCCCCcccCccceecCCCccCCCccCcccccccccCCCceEE
Q 043039 644 RRCSK-FKRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKI 722 (949)
Q Consensus 644 ~~~~~-l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i 722 (949)
.++.. .....+.+..+++++.|.++.|++.. ++.-. +. ...... .+. +++.
T Consensus 129 NgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq-------------~n~Dd----~c-~e~~s~---~v~-------tlh~ 180 (418)
T KOG2982|consen 129 NGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQ-------------LNLDD----NC-IEDWST---EVL-------TLHQ 180 (418)
T ss_pred cCCCCChhhhhhhhhcchhhhhhhhccchhhh-------------hcccc----cc-ccccch---hhh-------hhhc
Confidence 76541 12233344555566666554443321 11000 00 000000 111 1111
Q ss_pred ccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCC-CCCchhhcccC
Q 043039 723 RGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKA-RFPNWILSLNK 801 (949)
Q Consensus 723 ~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~-~~p~~~~~l~~ 801 (949)
..|.. ......+..-..++++.++-+..|++.+. ..-.+..+++.+..|+|+.+++.. .--+.+..++.
T Consensus 181 ~~c~~--~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~--------s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~ 250 (418)
T KOG2982|consen 181 LPCLE--QLWLNKNKLSRIFPNVNSVFVCEGPLKTE--------SSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQ 250 (418)
T ss_pred CCcHH--HHHHHHHhHHhhcccchheeeecCcccch--------hhcccCCCCCcchhhhhcccccccHHHHHHHcCCch
Confidence 11110 00011111223468888888888876543 133456778888899998877543 01223447899
Q ss_pred CcEEEEeccCCCCCCCC-------CCCCCCcceeeec
Q 043039 802 LRMLCLSFCKKCEIMPP-------LGKLQSLEVLDIW 831 (949)
Q Consensus 802 L~~L~L~~~~~~~~~~~-------l~~l~~L~~L~L~ 831 (949)
|..|.+.++++.+.+.. ++.|++++.|+=+
T Consensus 251 l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 251 LVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 99999999998776543 5678888887654
No 123
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=1.8e-07 Score=92.58 Aligned_cols=162 Identities=19% Similarity=0.222 Sum_probs=106.8
Q ss_pred cccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCC--CchhhcccCCcEEEEeccCCCCC
Q 043039 738 ELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARF--PNWILSLNKLRMLCLSFCKKCEI 815 (949)
Q Consensus 738 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~ 815 (949)
.++.|.+|+.|++.++.+.+. +...+..-.+|+.|+|++|.+.... .-.+.+++.|..|+|+.|.....
T Consensus 205 iLs~C~kLk~lSlEg~~LdD~---------I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~ 275 (419)
T KOG2120|consen 205 ILSQCSKLKNLSLEGLRLDDP---------IVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTE 275 (419)
T ss_pred HHHHHHhhhhccccccccCcH---------HHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccch
Confidence 356677888888887776654 5556666778888888888764422 22244788888888888875543
Q ss_pred CCC--C-CCCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceeeeccccccccccccccccccccccceeccccCccC
Q 043039 816 MPP--L-GKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKL 892 (949)
Q Consensus 816 ~~~--l-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l 892 (949)
.-. + .--++|..|+|+||.. .+...........+|+|..|+++++-.++...+ ..+..|+.|++|.++.|..+
T Consensus 276 ~Vtv~V~hise~l~~LNlsG~rr--nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~--~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 276 KVTVAVAHISETLTQLNLSGYRR--NLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF--QEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred hhhHHHhhhchhhhhhhhhhhHh--hhhhhHHHHHHHhCCceeeeccccccccCchHH--HHHHhcchheeeehhhhcCC
Confidence 211 1 1236788888888752 122211122233688899999988777665332 34668999999999999765
Q ss_pred cCCCC---CCCCCCCcceEEEccCC
Q 043039 893 KMLPD---QVLRSTTLKKLEINDCP 914 (949)
Q Consensus 893 ~~lp~---~~~~l~~L~~L~l~~c~ 914 (949)
. |. .+...|+|.+|++.+|-
T Consensus 352 ~--p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 352 I--PETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred C--hHHeeeeccCcceEEEEecccc
Confidence 4 33 24567889999998874
No 124
>CHL00181 cbbX CbbX; Provisional
Probab=98.04 E-value=0.00029 Score=74.16 Aligned_cols=137 Identities=13% Similarity=0.120 Sum_probs=75.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCce
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKK 281 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 281 (949)
..+.++|++|+||||+|+.++......+.-...-|+.++. . ++.....+.. .......+.+. . .
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~----~l~~~~~g~~-----~~~~~~~l~~a-~--g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----D----DLVGQYIGHT-----APKTKEVLKKA-M--G 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----H----HHHHHHhccc-----hHHHHHHHHHc-c--C
Confidence 3478899999999999999976421111111112444441 1 1222221111 11122233332 2 2
Q ss_pred EEEEEeCCCCC---------CcccHHHHHHhhhccCCCcEEEEEccchhhHhhh--------cCcceEeCCCCChHhHHH
Q 043039 282 VLLVLDDVWTE---------DGNKWESFQRCLINAHRGSKILVTTRKETVARMI--------GSTCVISIEELSEPECWS 344 (949)
Q Consensus 282 ~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~--------~~~~~~~l~~l~~~~~~~ 344 (949)
-+|++|++... ..+..+.+...+.....+.+||+++......... .....+.+.+++.++..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 49999999642 1122333444454444566777777644332211 113478999999999999
Q ss_pred HHHHHhhccC
Q 043039 345 LFKRFAFLNR 354 (949)
Q Consensus 345 l~~~~~~~~~ 354 (949)
++...+....
T Consensus 204 I~~~~l~~~~ 213 (287)
T CHL00181 204 IAKIMLEEQQ 213 (287)
T ss_pred HHHHHHHHhc
Confidence 9988875433
No 125
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=0.00023 Score=79.96 Aligned_cols=181 Identities=15% Similarity=0.194 Sum_probs=109.1
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccc---------------------cccc
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVS---------------------NNFN 232 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---------------------~~f~ 232 (949)
.+++|.+..++.+.+++.... -.+.+.++|+.|+||||+|+.+.+...-. .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 468999999999999986432 24678899999999999998886531100 0111
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHh-hhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCc
Q 043039 233 VMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINN-RIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGS 311 (949)
Q Consensus 233 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 311 (949)
.+++.......+ .+...+.+.+.. ...+++-++|+|++........+.+...+......+
T Consensus 92 -~~~i~g~~~~gi------------------d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 -VLEIDGASHRGI------------------EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred -eEEeeccccCCH------------------HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 111111111111 111222221111 112556689999997655455667777776655566
Q ss_pred EEEEEccc-hhhHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCch-HHHH
Q 043039 312 KILVTTRK-ETVARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPL-AVKT 382 (949)
Q Consensus 312 ~iivTtr~-~~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~ 382 (949)
.+|++|.. ..+...+ .....+++.++++++....+.+.+-..+.. ...+.+..|++.++|.+- |+..
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~----i~~~al~~L~~~s~gdlr~a~~~ 222 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE----TSREALLPIARAAQGSLRDAESL 222 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 77776643 3333222 235689999999999998888776433221 224567788889998664 4333
No 126
>PF14516 AAA_35: AAA-like domain
Probab=98.04 E-value=0.0016 Score=70.45 Aligned_cols=202 Identities=13% Similarity=0.097 Sum_probs=117.8
Q ss_pred ccCccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCC-----CCHH
Q 043039 172 NVSEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDP-----FDVF 246 (949)
Q Consensus 172 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~ 246 (949)
+.+.-|+|...-+++.+.+... -..+.|.|+-.+|||+|...+.+..+.. .| .++++++..- .+..
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLE 79 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHH
Confidence 3344678886777777777543 2489999999999999999988763332 33 4557776542 3455
Q ss_pred HHHHHHHH----hcCCCCC--C-----CcchHHHHHHHHhhh---CCceEEEEEeCCCCCCc--ccHHHHHHhh----hc
Q 043039 247 RVWKAIIE----NLDGYTP--D-----LGELNTLHQLINNRI---GGKKVLLVLDDVWTEDG--NKWESFQRCL----IN 306 (949)
Q Consensus 247 ~~~~~i~~----~l~~~~~--~-----~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~--~~~~~l~~~l----~~ 306 (949)
+.++.+.. +++.... + ..........+.+.+ .+++.+|+||+++..-. ...+++...+ ..
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~ 159 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQ 159 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHh
Confidence 55555544 4443211 0 111122333344432 26899999999965321 1112222222 21
Q ss_pred cC----CCcEEEEEccchhh---Hh----hhcCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCC
Q 043039 307 AH----RGSKILVTTRKETV---AR----MIGSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKG 375 (949)
Q Consensus 307 ~~----~gs~iivTtr~~~v---~~----~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 375 (949)
.. ...-.+|...+.+. .. .......++|++++.+|...|+.++... .. ....++|...+||
T Consensus 160 ~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~----~~----~~~~~~l~~~tgG 231 (331)
T PF14516_consen 160 RKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE----FS----QEQLEQLMDWTGG 231 (331)
T ss_pred cccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc----CC----HHHHHHHHHHHCC
Confidence 11 11112222222111 11 1122357899999999999999887432 11 2227889999999
Q ss_pred CchHHHHHHhhhccC
Q 043039 376 LPLAVKTIGSLLRFK 390 (949)
Q Consensus 376 ~Plal~~~~~~l~~~ 390 (949)
+|.-+..++..+...
T Consensus 232 hP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 232 HPYLVQKACYLLVEE 246 (331)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999998653
No 127
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.0002 Score=83.27 Aligned_cols=180 Identities=16% Similarity=0.189 Sum_probs=112.2
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcc---------------------cccccc
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDAD---------------------VSNNFN 232 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---------------------~~~~f~ 232 (949)
.+++|.+..++.|..++.... -.+.+.++|+.|+||||+|+.+..... ...+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 468999999999999986532 346788999999999999987655311 011233
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcE
Q 043039 233 VMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSK 312 (949)
Q Consensus 233 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 312 (949)
. ..+..+....+..+ +++++++... -..+++=++|+|++.......++.+...+..-..++.
T Consensus 92 ~-~~ld~~~~~~vd~I-r~li~~~~~~----------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ti 153 (614)
T PRK14971 92 I-HELDAASNNSVDDI-RNLIEQVRIP----------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAI 153 (614)
T ss_pred e-EEecccccCCHHHH-HHHHHHHhhC----------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeE
Confidence 1 22222221111111 1111111100 0123455889999987766778888888877666777
Q ss_pred EEEEc-cchhhHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHH
Q 043039 313 ILVTT-RKETVARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAV 380 (949)
Q Consensus 313 iivTt-r~~~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 380 (949)
+|++| +...+...+ .....+++.+++.++....+.+.+...+... ..+.+..|++.++|-.--+
T Consensus 154 fIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i----~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 154 FILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITA----EPEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 66655 444444333 3356899999999999998888765433221 2345677888899866533
No 128
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.02 E-value=2e-07 Score=96.73 Aligned_cols=291 Identities=16% Similarity=0.106 Sum_probs=173.0
Q ss_pred CCceEEEecCCCC---CCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccC-Cccc--chhhcCCCC
Q 043039 564 KKLRSLLIQGYSL---QHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVG-IEEL--PETFCELFN 637 (949)
Q Consensus 564 ~~Lr~L~l~~~~l---~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~-i~~l--p~~l~~L~~ 637 (949)
..|+.|.+.|+.- ..+..+...++++..|.+.+|.......+-..-..+++|++|+|..|. ++.. -.....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4578888888753 345556678999999999998742222223334478999999999864 4422 223347899
Q ss_pred CcEEeecCCCCCCc--cccccccCCCCCeeeCCCcccccCCcCCCCCCCCcccCccceecCCCccCCCccCccccccccc
Q 043039 638 LQNLDLRRCSKFKR--LPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNH 715 (949)
Q Consensus 638 L~~L~L~~~~~l~~--lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~ 715 (949)
|++|+++.|..+.. +-.....+..|+.+...++ ... .|+.|.... .....+.
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC--~e~--------~le~l~~~~------------~~~~~i~---- 271 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC--LEL--------ELEALLKAA------------AYCLEIL---- 271 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhccc--ccc--------cHHHHHHHh------------ccChHhh----
Confidence 99999999985543 1111122222222221110 000 011111000 0000000
Q ss_pred CCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcC-CCCCCcCceEEeccccCCCC-C
Q 043039 716 LRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEAL-RPHPNLESLQISFYEVKARF-P 793 (949)
Q Consensus 716 L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~L~~~~~~~~~-p 793 (949)
.+.+..|..+++.... ..-..+..|+.|..+.+...++ .....+ ...++|+.|-+.+|...+.. -
T Consensus 272 ---~lnl~~c~~lTD~~~~--~i~~~c~~lq~l~~s~~t~~~d--------~~l~aLg~~~~~L~~l~l~~c~~fsd~~f 338 (483)
T KOG4341|consen 272 ---KLNLQHCNQLTDEDLW--LIACGCHALQVLCYSSCTDITD--------EVLWALGQHCHNLQVLELSGCQQFSDRGF 338 (483)
T ss_pred ---ccchhhhccccchHHH--HHhhhhhHhhhhcccCCCCCch--------HHHHHHhcCCCceEEEeccccchhhhhhh
Confidence 1122233334433211 1223567778887776654322 233333 45688999999888632211 1
Q ss_pred chhh-cccCCcEEEEeccCCCCC--CCC-CCCCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceeeecccccccccc
Q 043039 794 NWIL-SLNKLRMLCLSFCKKCEI--MPP-LGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEWE 869 (949)
Q Consensus 794 ~~~~-~l~~L~~L~L~~~~~~~~--~~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~ 869 (949)
..++ +.+.|+.+++.+|..... +.. -.++|.|+.|.|+.|..+++.+.............|+.|.+.+++..++..
T Consensus 339 t~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~ 418 (483)
T KOG4341|consen 339 TMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT 418 (483)
T ss_pred hhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH
Confidence 1222 678899999998864332 233 347899999999999988777666666556678889999999998877644
Q ss_pred ccccccccccccceeccccCccCcCC
Q 043039 870 FIEENITIMPQLNSLAIRDCSKLKML 895 (949)
Q Consensus 870 ~~~~~~~~l~~L~~L~l~~c~~l~~l 895 (949)
. ..+..+++|+.+++-+|...+.-
T Consensus 419 L--e~l~~c~~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 419 L--EHLSICRNLERIELIDCQDVTKE 442 (483)
T ss_pred H--HHHhhCcccceeeeechhhhhhh
Confidence 3 34568899999999999887743
No 129
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00029 Score=82.04 Aligned_cols=196 Identities=14% Similarity=0.169 Sum_probs=111.7
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAII 253 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 253 (949)
.+++|.+...+.|..++.... -.+.+.++|+.|+||||+|+.+.+...-. ..+... ..........+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~~----~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKPT----PEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCCC----CCCCcccHHHHHHh
Confidence 458899999999999987532 23567899999999999999887652110 000000 00111111222221
Q ss_pred HhcCC-----CCCCCcchHHHHHHHHhh----hCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccc-hhhH
Q 043039 254 ENLDG-----YTPDLGELNTLHQLINNR----IGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRK-ETVA 323 (949)
Q Consensus 254 ~~l~~-----~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 323 (949)
..... ........+.+.+.+... ..+++-++|+|+++......++.+...+..-...+.+|++|.+ ..+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 11110 000111122222222111 1245568999999877666778888887765555666655544 3333
Q ss_pred hhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHH
Q 043039 324 RMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTI 383 (949)
Q Consensus 324 ~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 383 (949)
..+ .....+++..++.++....+...+...+.... .+.+..|++.++|.+..+..+
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is----~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE----PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 332 23567888899999988888776643322111 345778888999987554433
No 130
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.00 E-value=8.7e-07 Score=99.63 Aligned_cols=120 Identities=23% Similarity=0.330 Sum_probs=60.4
Q ss_pred CCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccchhhcCCCCCcEEee
Q 043039 564 KKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPETFCELFNLQNLDL 643 (949)
Q Consensus 564 ~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L~~L~L 643 (949)
..+..+.+..|.+..+-..+..+++|..|++.+|. +..+...+..+++|++|++++|.|+.+. .+..+..|+.|++
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~---i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNK---IEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccc---hhhcccchhhhhcchheecccccccccc-chhhccchhhhee
Confidence 33444444444444432334455556666665555 4444433555566666666666655552 3445555666666
Q ss_pred cCCCCCCccccccccCCCCCeeeCCCcccccCCcC-CCCCCCCcccC
Q 043039 644 RRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKG-MGSLTGLRTLS 689 (949)
Q Consensus 644 ~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~-i~~l~~L~~L~ 689 (949)
++|. +..++ .+..+++|+.+++++|.++.+... +..+.+|+.+.
T Consensus 148 ~~N~-i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~ 192 (414)
T KOG0531|consen 148 SGNL-ISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELD 192 (414)
T ss_pred ccCc-chhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHh
Confidence 6655 44333 334455566666655555554332 34444444444
No 131
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.95 E-value=3.2e-05 Score=82.66 Aligned_cols=88 Identities=20% Similarity=0.106 Sum_probs=62.1
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCC--CCHHHHHHHHHHhcCCCCCCCcch------HHHHHH
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDP--FDVFRVWKAIIENLDGYTPDLGEL------NTLHQL 272 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~------~~~~~~ 272 (949)
-..++|+|++|+|||||++.+++.... ++|+..+||.+.++ .++.++++.+...+-....+.... ..+.+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 357899999999999999999997433 37999999999866 799999999965543332222111 111222
Q ss_pred HHhh-hCCceEEEEEeCC
Q 043039 273 INNR-IGGKKVLLVLDDV 289 (949)
Q Consensus 273 l~~~-l~~~~~LlVlDdv 289 (949)
.+.. -.+++++|++|++
T Consensus 247 Ae~~~~~GkdVVLlIDEi 264 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSI 264 (415)
T ss_pred HHHHHHcCCCeEEEEECh
Confidence 2222 3589999999999
No 132
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.95 E-value=0.0002 Score=75.00 Aligned_cols=162 Identities=13% Similarity=0.145 Sum_probs=81.6
Q ss_pred ccccchhHHHHHHHHHcc---------CCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCH
Q 043039 175 EVCGRNEEKNALKGKLLS---------ETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDV 245 (949)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~---------~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 245 (949)
.++|.+..++++.+.... ......+...-+.++|++|+||||+|+.+++.....+......++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 478888777666543211 1111233456678999999999999999876421111111111222221
Q ss_pred HHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCC--------cccHHHHHHhhhccCCCcEEEEEc
Q 043039 246 FRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTED--------GNKWESFQRCLINAHRGSKILVTT 317 (949)
Q Consensus 246 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTt 317 (949)
.+ +....-+. ........+.+. . .-+|++|++..-. ....+.+...+........+|+++
T Consensus 83 ~~----l~~~~~g~-----~~~~~~~~~~~a-~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 83 AD----LVGEYIGH-----TAQKTREVIKKA-L--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred HH----hhhhhccc-----hHHHHHHHHHhc-c--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 11 11111110 011222233322 1 2489999996421 112233444443333334556665
Q ss_pred cchhhHh------hh-cC-cceEeCCCCChHhHHHHHHHHhhc
Q 043039 318 RKETVAR------MI-GS-TCVISIEELSEPECWSLFKRFAFL 352 (949)
Q Consensus 318 r~~~v~~------~~-~~-~~~~~l~~l~~~~~~~l~~~~~~~ 352 (949)
...+... .. .. ...+.+++++.++..+++.+.+..
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 4433211 11 11 246889999999999999887753
No 133
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.93 E-value=0.00032 Score=73.97 Aligned_cols=134 Identities=15% Similarity=0.137 Sum_probs=73.0
Q ss_pred EEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceE
Q 043039 203 VISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKV 282 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 282 (949)
-+.++|++|+|||++|+.+.......+.....-|+.++. . +++..+.+.. .......+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~----~l~~~~~g~~-----~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----D----DLVGQYIGHT-----APKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----H----HHhHhhcccc-----hHHHHHHHHHc---cCc
Confidence 578999999999999977765321111111112333332 1 2222222211 11222233332 235
Q ss_pred EEEEeCCCCC---------CcccHHHHHHhhhccCCCcEEEEEccchhhHhhh--c------CcceEeCCCCChHhHHHH
Q 043039 283 LLVLDDVWTE---------DGNKWESFQRCLINAHRGSKILVTTRKETVARMI--G------STCVISIEELSEPECWSL 345 (949)
Q Consensus 283 LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~--~------~~~~~~l~~l~~~~~~~l 345 (949)
+|+||++... ....++.+...+.....+.+||+++......... . ....+++.+++.+|..++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8999999632 1122344555555555566777776543222111 1 134789999999999999
Q ss_pred HHHHhhc
Q 043039 346 FKRFAFL 352 (949)
Q Consensus 346 ~~~~~~~ 352 (949)
+.+++-.
T Consensus 204 ~~~~l~~ 210 (284)
T TIGR02880 204 AGLMLKE 210 (284)
T ss_pred HHHHHHH
Confidence 9887643
No 134
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00044 Score=79.53 Aligned_cols=193 Identities=15% Similarity=0.190 Sum_probs=112.6
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAII 253 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 253 (949)
.+++|-+..++.|..++.... -.+.+.++|+.|+||||+|+.+.+...-...... ..+....+- +.|.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHHH
Confidence 468999999999999996532 3467889999999999999998774211000000 000000000 0000
Q ss_pred Hh-------cCCCC-CCCcchHHHHHHHHh-hhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccc-hhhH
Q 043039 254 EN-------LDGYT-PDLGELNTLHQLINN-RIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRK-ETVA 323 (949)
Q Consensus 254 ~~-------l~~~~-~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 323 (949)
.. +.+.. ....+...+.+.+.. -..+++-++|+|++.......++.+...+......+.+|++|.. ..+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 00 00000 111122222222221 12355668999999877666777788877765566777666644 3333
Q ss_pred hhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHH
Q 043039 324 RMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKT 382 (949)
Q Consensus 324 ~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 382 (949)
..+ .....+++.+++.++..+.+.+.+...+.. -..+.+..|++.++|.+..+..
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~----id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK----YEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 332 224578999999999988888876543322 2245667788889998754433
No 135
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.93 E-value=0.00061 Score=70.87 Aligned_cols=167 Identities=17% Similarity=0.235 Sum_probs=104.8
Q ss_pred cCccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 043039 173 VSEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAI 252 (949)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 252 (949)
++.|.+|+.++..+..++..... --+..|.|+|-+|.|||.+.+++++.. -...+|+++-+.++.+-++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~-----n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKL-----NLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhc-----CCcceeeehHHhccHHHHHHHH
Confidence 46789999999999998865431 234567999999999999999999864 2246899999999999999999
Q ss_pred HHhcCCCCCCCc--c-----hHHHHHHHHh--hhC--CceEEEEEeCCCCCCcccHHH-HHHhh---hc-cCCCcEEEEE
Q 043039 253 IENLDGYTPDLG--E-----LNTLHQLINN--RIG--GKKVLLVLDDVWTEDGNKWES-FQRCL---IN-AHRGSKILVT 316 (949)
Q Consensus 253 ~~~l~~~~~~~~--~-----~~~~~~~l~~--~l~--~~~~LlVlDdv~~~~~~~~~~-l~~~l---~~-~~~gs~iivT 316 (949)
+.+.+..+.+.. + .......+.+ ... ++.++|||||++.-. +.+. +...+ .. .+...-+|++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lr--D~~a~ll~~l~~L~el~~~~~i~iil 154 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALR--DMDAILLQCLFRLYELLNEPTIVIIL 154 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhh--ccchHHHHHHHHHHHHhCCCceEEEE
Confidence 999863222211 1 1112222332 122 568999999995421 1111 11111 11 1112334454
Q ss_pred ccchhhH---hhhcCc--ceEeCCCCChHhHHHHHHHH
Q 043039 317 TRKETVA---RMIGST--CVISIEELSEPECWSLFKRF 349 (949)
Q Consensus 317 tr~~~v~---~~~~~~--~~~~l~~l~~~~~~~l~~~~ 349 (949)
+....-. ..++.. .++....-+.+|..+++.+.
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 4432211 123433 35666778889998888653
No 136
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.92 E-value=0.00028 Score=70.34 Aligned_cols=175 Identities=21% Similarity=0.247 Sum_probs=101.4
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAII 253 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 253 (949)
.+|+|.+...+++.-++..... ..+.+--+.++|++|.||||||.-+.++..+ .+. ++......-..-+..|+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv--n~k----~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANELGV--NLK----ITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC--CeE----ecccccccChhhHHHHH
Confidence 4699999999988887765433 4456677899999999999999999986322 221 11111111111112222
Q ss_pred HhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhc--------cCCCcEEE-----------
Q 043039 254 ENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLIN--------AHRGSKIL----------- 314 (949)
Q Consensus 254 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~--------~~~gs~ii----------- 314 (949)
.. |+. .=++.+|.+.......-+-+...+.+ .++++|.|
T Consensus 99 t~---------------------Le~-~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 99 TN---------------------LEE-GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred hc---------------------CCc-CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEee
Confidence 22 222 22556677655432222222222221 12333332
Q ss_pred EEccchhhHhhhcC--cceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHH
Q 043039 315 VTTRKETVARMIGS--TCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVK 381 (949)
Q Consensus 315 vTtr~~~v~~~~~~--~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 381 (949)
-|||.-.+.+.+.. .-+.+++.-+.+|-.++..+.+..-+. .-..+.+.+|+++..|-|--..
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i----~i~~~~a~eIA~rSRGTPRIAn 221 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI----EIDEEAALEIARRSRGTPRIAN 221 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC----CCChHHHHHHHHhccCCcHHHH
Confidence 28886444433222 236778888999999999988743332 2336678889999999995443
No 137
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.91 E-value=0.00013 Score=88.40 Aligned_cols=154 Identities=20% Similarity=0.253 Sum_probs=85.4
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccc---cc-cceEE-EEEeCCCCCHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVS---NN-FNVMI-WVCVSDPFDVFRV 248 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~-f~~~~-wv~~~~~~~~~~~ 248 (949)
..++||+.++.+++..|.... ..-+.++|.+|+||||+|+.+....... .. ....+ .+.++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh-------
Confidence 458999999999999997543 2345699999999999999888742111 00 11222 233221
Q ss_pred HHHHHHhcCCCCCCCcchHH-HHHHHHhhh-CCceEEEEEeCCCCCC-------cccHHH-HHHhhhccCCC-cEEEEEc
Q 043039 249 WKAIIENLDGYTPDLGELNT-LHQLINNRI-GGKKVLLVLDDVWTED-------GNKWES-FQRCLINAHRG-SKILVTT 317 (949)
Q Consensus 249 ~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l-~~~~~LlVlDdv~~~~-------~~~~~~-l~~~l~~~~~g-s~iivTt 317 (949)
+........+.+. +...+.+.- .+++.+|++|++..-. ..+... +...+ ..| -++|-||
T Consensus 254 -------l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l---~~G~l~~IgaT 323 (852)
T TIGR03345 254 -------LQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL---ARGELRTIAAT 323 (852)
T ss_pred -------hhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh---hCCCeEEEEec
Confidence 1100011112222 222222221 2568999999995421 111111 22222 233 4566666
Q ss_pred cchhhHhhh-------cCcceEeCCCCChHhHHHHHHHHh
Q 043039 318 RKETVARMI-------GSTCVISIEELSEPECWSLFKRFA 350 (949)
Q Consensus 318 r~~~v~~~~-------~~~~~~~l~~l~~~~~~~l~~~~~ 350 (949)
...+....+ .....+.+.+++.++..+++....
T Consensus 324 T~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred CHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 654332111 124589999999999999975543
No 138
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00034 Score=81.30 Aligned_cols=182 Identities=13% Similarity=0.175 Sum_probs=110.6
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCccccc--------------------ccce
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSN--------------------NFNV 233 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------------------~f~~ 233 (949)
.+++|.+..++.|.+++.... -.+.+.++|+.|+||||+|+.+.+...-.. +++
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d- 89 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVD- 89 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCC-
Confidence 468999999999999986432 346778999999999999988866411000 111
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhh-hCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcE
Q 043039 234 MIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNR-IGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSK 312 (949)
Q Consensus 234 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 312 (949)
++.+.......+ .+.+++...+... ..+++-++|+|+++.......+.+...+..-...+.
T Consensus 90 ~~eid~~s~~~v------------------~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~ 151 (576)
T PRK14965 90 VFEIDGASNTGV------------------DDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVK 151 (576)
T ss_pred eeeeeccCccCH------------------HHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeE
Confidence 111111111111 1222222222211 124455899999987766677788888876656666
Q ss_pred EEEEcc-chhhHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCc-hHHHHH
Q 043039 313 ILVTTR-KETVARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLP-LAVKTI 383 (949)
Q Consensus 313 iivTtr-~~~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~ 383 (949)
+|++|. ...+...+ .....+++.+++.++....+...+...+... ..+....|++.++|.. .|+..+
T Consensus 152 fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i----~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 152 FIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI----SDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred EEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 666554 44444333 2356788999999998888877654333212 2445667888888865 444444
No 139
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.91 E-value=0.00025 Score=79.56 Aligned_cols=162 Identities=14% Similarity=0.151 Sum_probs=94.9
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCc
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGK 280 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 280 (949)
...+.|+|.+|+|||+|++.+.+.......-..++|++.+ ++..++...+... ..+. +.+..+.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~------~f~~~~~~~~~~~-----~~~~----f~~~~~~~ 194 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLVDSMKEG-----KLNE----FREKYRKK 194 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHhcc-----cHHH----HHHHHHhc
Confidence 4459999999999999999999863221111346677643 4555665555321 1222 22233334
Q ss_pred eEEEEEeCCCCCCc-ccH-HHHHHhhhc-cCCCcEEEEEccc-hhh--------HhhhcCcceEeCCCCChHhHHHHHHH
Q 043039 281 KVLLVLDDVWTEDG-NKW-ESFQRCLIN-AHRGSKILVTTRK-ETV--------ARMIGSTCVISIEELSEPECWSLFKR 348 (949)
Q Consensus 281 ~~LlVlDdv~~~~~-~~~-~~l~~~l~~-~~~gs~iivTtr~-~~v--------~~~~~~~~~~~l~~l~~~~~~~l~~~ 348 (949)
.-+|++||+..... ..+ ..+...+.. ...|..||+||.. +.- ...+.....+++++.+.+.-..++.+
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHH
Confidence 55899999964311 111 233333322 1234578888853 221 12223345789999999999999998
Q ss_pred HhhccCCCCCchhHHHHHHHHHHhcCCCchHHH
Q 043039 349 FAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVK 381 (949)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 381 (949)
++...... --.++...|++.+.|.--.+.
T Consensus 275 ~~~~~~~~----l~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 275 MLEIEHGE----LPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHhcCCC----CCHHHHHHHHhccccCHHHHH
Confidence 87543221 125567778888877654443
No 140
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.90 E-value=0.0004 Score=77.90 Aligned_cols=161 Identities=16% Similarity=0.191 Sum_probs=93.6
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCc
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGK 280 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 280 (949)
...+.|+|..|+|||+|++++++.......-..++++++. ++...+...+... ..... .+.+++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~~~----~~~~~~- 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE------KFTNDFVNALRNN-----KMEEF----KEKYRS- 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH------HHHHHHHHHHHcC-----CHHHH----HHHHHh-
Confidence 3568999999999999999999863222112345666543 3344444444321 12222 222322
Q ss_pred eEEEEEeCCCCCCccc--HHHHHHhhhcc-CCCcEEEEEccch-h--------hHhhhcCcceEeCCCCChHhHHHHHHH
Q 043039 281 KVLLVLDDVWTEDGNK--WESFQRCLINA-HRGSKILVTTRKE-T--------VARMIGSTCVISIEELSEPECWSLFKR 348 (949)
Q Consensus 281 ~~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~gs~iivTtr~~-~--------v~~~~~~~~~~~l~~l~~~~~~~l~~~ 348 (949)
.-+|||||++...... .+.+...+... ..|..||+|+... . +...+.....+.+.+.+.++-..++.+
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHH
Confidence 2388999996532211 12233333221 2355688888642 1 112222234789999999999999999
Q ss_pred HhhccCCCCCchhHHHHHHHHHHhcCCCchHHH
Q 043039 349 FAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVK 381 (949)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 381 (949)
++...+.. --.++...|++.+.|.+-.+.
T Consensus 280 ~~~~~~~~----l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 280 KAEEEGLE----LPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHcCCC----CCHHHHHHHHHhcCCCHHHHH
Confidence 88543321 225667778888887765443
No 141
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.90 E-value=0.00032 Score=69.62 Aligned_cols=127 Identities=22% Similarity=0.298 Sum_probs=73.9
Q ss_pred ccccCccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHH
Q 043039 170 LINVSEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVW 249 (949)
Q Consensus 170 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 249 (949)
.+.-..++|-|+..+.|.+-...--. .....-+.+||..|+|||++++++.+....++ .--|.+.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~--------- 87 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQ--GLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVS--------- 87 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHc--CCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEEC---------
Confidence 34456799999998888774322111 12344567899999999999999987422221 1111222
Q ss_pred HHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCC-CCcccHHHHHHhhhcc----CCCcEEEEEccchhhH
Q 043039 250 KAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWT-EDGNKWESFQRCLINA----HRGSKILVTTRKETVA 323 (949)
Q Consensus 250 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~----~~gs~iivTtr~~~v~ 323 (949)
..+..++..+.+.++. +..||+|.+||+-= +....+..+.+.+..+ .....|..||..+...
T Consensus 88 ----------k~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 88 ----------KEDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred ----------HHHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 1223345555555553 46799999999842 2334566677766432 2333444455444443
No 142
>PRK06620 hypothetical protein; Validated
Probab=97.88 E-value=0.00024 Score=71.35 Aligned_cols=134 Identities=13% Similarity=0.074 Sum_probs=78.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCce
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKK 281 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 281 (949)
+.+.|+|++|+|||+|++.+.+... . .++. ..+.. + +..+ ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~---------------------~-------~~~~-~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFN---------------------E-------EILE-KY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhc---------------------h-------hHHh-cC
Confidence 5789999999999999999887521 1 1111 00000 0 0011 23
Q ss_pred EEEEEeCCCCCCcccHHHHHHhhhc-cCCCcEEEEEccchh-------hHhhhcCcceEeCCCCChHhHHHHHHHHhhcc
Q 043039 282 VLLVLDDVWTEDGNKWESFQRCLIN-AHRGSKILVTTRKET-------VARMIGSTCVISIEELSEPECWSLFKRFAFLN 353 (949)
Q Consensus 282 ~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtr~~~-------v~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~ 353 (949)
-++++||+..... ..+...+.. ...|..||+|++... ....+....++++++++.++-..++.+.+...
T Consensus 87 d~lliDdi~~~~~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 87 NAFIIEDIENWQE---PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CEEEEeccccchH---HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 4788999953211 123222221 135678999998532 22333444589999999999888888776432
Q ss_pred CCCCCchhHHHHHHHHHHhcCCCchHH
Q 043039 354 RSRSDCKQLEEIGRKITWKCKGLPLAV 380 (949)
Q Consensus 354 ~~~~~~~~~~~~~~~i~~~~~g~Plal 380 (949)
+- .--+++.+-|++++.|---.+
T Consensus 164 ~l----~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 164 SV----TISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred CC----CCCHHHHHHHHHHccCCHHHH
Confidence 21 122556677777776654443
No 143
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.86 E-value=0.00011 Score=81.28 Aligned_cols=160 Identities=15% Similarity=0.189 Sum_probs=89.9
Q ss_pred cCccccchhHHHHHHHHHccCCCC-------CCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCH
Q 043039 173 VSEVCGRNEEKNALKGKLLSETAE-------QPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDV 245 (949)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 245 (949)
..++.|+++.++++.+.+...-.. +-...+-|.++|++|+|||++|+++++.. ...| +.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~--~~~~-----i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET--NATF-----IRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh--CCCE-----EEeeh----
Confidence 346899999999998876421110 11234568999999999999999999852 2222 22211
Q ss_pred HHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCC-----------CcccHHHHHHhhhc-----cCC
Q 043039 246 FRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTE-----------DGNKWESFQRCLIN-----AHR 309 (949)
Q Consensus 246 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~~~~~~~l~~~l~~-----~~~ 309 (949)
.+ +.....+. ....+...+...-...+.+|+||+++.- +......+...+.. ...
T Consensus 199 ~~----l~~~~~g~-----~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 199 SE----LVQKFIGE-----GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred HH----HhHhhccc-----hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 11 11111110 1111222222222356789999999642 01112223333321 123
Q ss_pred CcEEEEEccchhhHh-hh----cCcceEeCCCCChHhHHHHHHHHhhc
Q 043039 310 GSKILVTTRKETVAR-MI----GSTCVISIEELSEPECWSLFKRFAFL 352 (949)
Q Consensus 310 gs~iivTtr~~~v~~-~~----~~~~~~~l~~l~~~~~~~l~~~~~~~ 352 (949)
+..||.||....... .+ .-+..+.+...+.++..++|..+...
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~ 317 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRK 317 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhcc
Confidence 566777877643322 11 12457999999999999999987643
No 144
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.0008 Score=77.79 Aligned_cols=179 Identities=14% Similarity=0.168 Sum_probs=108.4
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccc--------------------cccce
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVS--------------------NNFNV 233 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--------------------~~f~~ 233 (949)
.+++|.+...+.+.+++.... -.+.+.++|+.|+||||+|+.+.....-. .+++
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~d- 89 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMD- 89 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCC-
Confidence 469999999999999997542 34677889999999999998876531100 0111
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhh-hCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcE
Q 043039 234 MIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNR-IGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSK 312 (949)
Q Consensus 234 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 312 (949)
++.++.+....+ .+...+...+... ..+++-++|+|++.......++.+...+........
T Consensus 90 v~eidaas~~~v------------------d~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~i 151 (559)
T PRK05563 90 VIEIDAASNNGV------------------DEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVI 151 (559)
T ss_pred eEEeeccccCCH------------------HHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeE
Confidence 112221111111 1122222222211 235566899999987666677778777765555555
Q ss_pred EEEEcc-chhhHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHH
Q 043039 313 ILVTTR-KETVARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAV 380 (949)
Q Consensus 313 iivTtr-~~~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 380 (949)
+|++|. ...+...+ .....+++.+++.++....+...+...+...+ .+.+..|++.++|.+..+
T Consensus 152 fIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~----~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 152 FILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE----DEALRLIARAAEGGMRDA 217 (559)
T ss_pred EEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 565553 33333322 23467889999999998888887643332122 355667788888877543
No 145
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.84 E-value=3.3e-06 Score=94.95 Aligned_cols=102 Identities=29% Similarity=0.384 Sum_probs=81.8
Q ss_pred cCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccchhhcCCCCCcEEeecCCCCCCccccccccCCCCCe
Q 043039 585 QLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRH 664 (949)
Q Consensus 585 ~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 664 (949)
.+..++.+.+..+. +..+-..++.+.+|++|++.+|.|..+...+..+++|++|++++|. +..+. .+..++.|+.
T Consensus 70 ~l~~l~~l~l~~n~---i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~-~l~~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQNL---IAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLE-GLSTLTLLKE 144 (414)
T ss_pred HhHhHHhhccchhh---hhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-ccccc-chhhccchhh
Confidence 45566667777776 6665556889999999999999999887668899999999999988 66664 5788888999
Q ss_pred eeCCCcccccCCcCCCCCCCCcccCccc
Q 043039 665 LIFDEDDLDYMPKGMGSLTGLRTLSEFV 692 (949)
Q Consensus 665 L~l~~~~l~~~p~~i~~l~~L~~L~~~~ 692 (949)
|++.+|.+..++ ++..+++|+.+++..
T Consensus 145 L~l~~N~i~~~~-~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 145 LNLSGNLISDIS-GLESLKSLKLLDLSY 171 (414)
T ss_pred heeccCcchhcc-CCccchhhhcccCCc
Confidence 999999998774 566688888887443
No 146
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.84 E-value=2.4e-05 Score=55.68 Aligned_cols=38 Identities=29% Similarity=0.401 Sum_probs=21.5
Q ss_pred CCCeeeecccCCcccchhhcCCCCCcEEeecCCCCCCcc
Q 043039 614 HLRYLKLFFVGIEELPETFCELFNLQNLDLRRCSKFKRL 652 (949)
Q Consensus 614 ~L~~L~L~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~l 652 (949)
+|++|++++|+|+.+|+.+++|++|++|++++|. +..+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCC
Confidence 4566666666666666556666666666666655 4433
No 147
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.83 E-value=0.00053 Score=77.91 Aligned_cols=161 Identities=16% Similarity=0.148 Sum_probs=94.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCc
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGK 280 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 280 (949)
...+.|+|.+|+|||+|++.+.+.......-..+++++.. ++...+...+... ... .+.+.++ +
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~----~~~~~~~-~ 211 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TME----EFKEKYR-S 211 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cHH----HHHHHHh-c
Confidence 3568999999999999999999863222112345566544 2333444443221 112 2223333 2
Q ss_pred eEEEEEeCCCCCCcc--cHHHHHHhhhc-cCCCcEEEEEccchh---------hHhhhcCcceEeCCCCChHhHHHHHHH
Q 043039 281 KVLLVLDDVWTEDGN--KWESFQRCLIN-AHRGSKILVTTRKET---------VARMIGSTCVISIEELSEPECWSLFKR 348 (949)
Q Consensus 281 ~~LlVlDdv~~~~~~--~~~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~~~~l~~l~~~~~~~l~~~ 348 (949)
.-+|||||+...... ..+.+...+.. ...|..||+||.... +...+.....+++++.+.++-..++.+
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHH
Confidence 348999999653211 12233333322 123456888886531 122333345899999999999999999
Q ss_pred HhhccCCCCCchhHHHHHHHHHHhcCCCchHHH
Q 043039 349 FAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVK 381 (949)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 381 (949)
++...+. .--.++...|++.+.|..-.+.
T Consensus 292 ~~~~~~~----~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 292 KAEEEGI----DLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHcCC----CCCHHHHHHHHcCcCCCHHHHH
Confidence 8854322 1225667888888888776443
No 148
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.80 E-value=0.0011 Score=74.32 Aligned_cols=154 Identities=18% Similarity=0.121 Sum_probs=87.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCc
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGK 280 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 280 (949)
...+.|+|+.|+|||+|++.+.+.... ....+++++. ..+...+...+... .. +.+++..+.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~--~~~~v~yi~~------~~f~~~~~~~l~~~-----~~----~~f~~~~~~- 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRE--SGGKILYVRS------ELFTEHLVSAIRSG-----EM----QRFRQFYRN- 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHH--cCCCEEEeeH------HHHHHHHHHHHhcc-----hH----HHHHHHccc-
Confidence 356889999999999999999986322 2233555553 23444444444321 11 223333333
Q ss_pred eEEEEEeCCCCCCccc--HHHHHHhhhc-cCCCcEEEEEccch---------hhHhhhcCcceEeCCCCChHhHHHHHHH
Q 043039 281 KVLLVLDDVWTEDGNK--WESFQRCLIN-AHRGSKILVTTRKE---------TVARMIGSTCVISIEELSEPECWSLFKR 348 (949)
Q Consensus 281 ~~LlVlDdv~~~~~~~--~~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~l~~~~~~~l~~~ 348 (949)
.-++++||+....... .+.+...+.. ...|..||+||... .+...+.....+++.+++.++...++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 3488889996532211 2233333321 12355788888642 1122233346889999999999999998
Q ss_pred HhhccCCCCCchhHHHHHHHHHHhcCCC
Q 043039 349 FAFLNRSRSDCKQLEEIGRKITWKCKGL 376 (949)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 376 (949)
++...+..- -.++..-|++.+.|.
T Consensus 283 k~~~~~~~l----~~evl~~la~~~~~d 306 (445)
T PRK12422 283 KAEALSIRI----EETALDFLIEALSSN 306 (445)
T ss_pred HHHHcCCCC----CHHHHHHHHHhcCCC
Confidence 875433211 244455565555543
No 149
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.78 E-value=6.7e-05 Score=80.70 Aligned_cols=64 Identities=20% Similarity=0.322 Sum_probs=38.9
Q ss_pred hccCCceeEEEeCCccccccccccccccCCCCCCeeeecccC-CcccchhhcCCCCCcEEeecCCCCCCcccc
Q 043039 583 FDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVG-IEELPETFCELFNLQNLDLRRCSKFKRLPQ 654 (949)
Q Consensus 583 ~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~-i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~ 654 (949)
+..+.+++.|++++|. +..+|. -..+|+.|.+++|. +..+|..+. .+|+.|++++|..+..+|.
T Consensus 48 ~~~~~~l~~L~Is~c~---L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDCD---IESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHhcCCCEEEeCCCC---CcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc
Confidence 4456777777777775 666662 12357777776643 555665442 4677777777755666664
No 150
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.76 E-value=4.4e-06 Score=73.25 Aligned_cols=106 Identities=20% Similarity=0.262 Sum_probs=57.3
Q ss_pred eEEEecCCCCCCcchh---hccCCceeEEEeCCcccccccccccccc-CCCCCCeeeecccCCcccchhhcCCCCCcEEe
Q 043039 567 RSLLIQGYSLQHMPSF---FDQLTCLRALRIGKYGDDAIERIPNGIE-KLIHLRYLKLFFVGIEELPETFCELFNLQNLD 642 (949)
Q Consensus 567 r~L~l~~~~l~~l~~~---~~~l~~Lr~L~L~~~~~~~~~~lp~~i~-~l~~L~~L~L~~~~i~~lp~~l~~L~~L~~L~ 642 (949)
..++|++|.+-.+++. +....+|...+|++|. +...|..+. +.+.++.|+|++|.|+.+|..+..++.|+.|+
T Consensus 30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~---fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG---FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhcccccchhhHHHHHHHHHhCCceEEEEecccch---hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 3444555544433332 2334445555666655 555554443 23355666666666666666666666666666
Q ss_pred ecCCCCCCccccccccCCCCCeeeCCCcccccCC
Q 043039 643 LRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMP 676 (949)
Q Consensus 643 L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p 676 (949)
++.|+ +...|.-|..|.+|..|+...|.+..+|
T Consensus 107 l~~N~-l~~~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 107 LRFNP-LNAEPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred cccCc-cccchHHHHHHHhHHHhcCCCCccccCc
Confidence 66655 5555555555666666665555555444
No 151
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.75 E-value=0.00056 Score=65.83 Aligned_cols=105 Identities=14% Similarity=0.184 Sum_probs=64.4
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAII 253 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 253 (949)
.++||.|+.++++.-+-.+ +..+-+.|.||+|+||||-+..+.+..--...-+.+.-.++|++..
T Consensus 27 ~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRG--------- 91 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERG--------- 91 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccc---------
Confidence 4689999999999877643 3456688999999999998877766411111113344334443332
Q ss_pred HhcCCCCCCCcchHHHHHHHHhhh-------CCceEEEEEeCCCCCCcccHHHHHHhhh
Q 043039 254 ENLDGYTPDLGELNTLHQLINNRI-------GGKKVLLVLDDVWTEDGNKWESFQRCLI 305 (949)
Q Consensus 254 ~~l~~~~~~~~~~~~~~~~l~~~l-------~~~~~LlVlDdv~~~~~~~~~~l~~~l~ 305 (949)
.+.+...++.+- .++.-+||||.+++........+++...
T Consensus 92 ------------IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtME 138 (333)
T KOG0991|consen 92 ------------IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTME 138 (333)
T ss_pred ------------cHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHH
Confidence 223333333221 2555689999998875555555665543
No 152
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.74 E-value=0.0016 Score=74.28 Aligned_cols=159 Identities=12% Similarity=0.107 Sum_probs=92.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCce
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKK 281 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 281 (949)
..+.|+|..|+|||.|++.+++.......-..+++++.. ++..++...+... ..+ .+++.++. -
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitae------ef~~el~~al~~~-----~~~----~f~~~y~~-~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSE------EFTNEFINSIRDG-----KGD----SFRRRYRE-M 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHHHHHHhc-----cHH----HHHHHhhc-C
Confidence 458999999999999999999863221112345566543 3444444443221 111 22233332 2
Q ss_pred EEEEEeCCCCCCcc-cH-HHHHHhhhcc-CCCcEEEEEccch---------hhHhhhcCcceEeCCCCChHhHHHHHHHH
Q 043039 282 VLLVLDDVWTEDGN-KW-ESFQRCLINA-HRGSKILVTTRKE---------TVARMIGSTCVISIEELSEPECWSLFKRF 349 (949)
Q Consensus 282 ~LlVlDdv~~~~~~-~~-~~l~~~l~~~-~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~l~~~~~~~l~~~~ 349 (949)
=+|||||+...... .| +.+...+... ..|..|||||+.. .+...+....+++|...+.+.-..++.++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 47889999654222 22 2233333322 2355688988752 22333444568999999999999999998
Q ss_pred hhccCCCCCchhHHHHHHHHHHhcCCCchHH
Q 043039 350 AFLNRSRSDCKQLEEIGRKITWKCKGLPLAV 380 (949)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 380 (949)
+....-.. -.+++.-|++++.+..-.|
T Consensus 459 a~~r~l~l----~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 459 AVQEQLNA----PPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHhcCCCC----CHHHHHHHHHhccCCHHHH
Confidence 85433222 2556666777766554333
No 153
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=0.0015 Score=69.71 Aligned_cols=197 Identities=13% Similarity=0.151 Sum_probs=113.2
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCc---cc----------ccccceEEEEEeC
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDA---DV----------SNNFNVMIWVCVS 240 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~---~~----------~~~f~~~~wv~~~ 240 (949)
.+++|.+...+.+...+.... -.+...++|+.|+||+++|..+.+.. .. ...+.-..|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 358999999999999996542 24789999999999999997765431 00 1122223444321
Q ss_pred CCCCHHHHHHHHHHhcC--CCCCCC---cchHHHHHHHHhh-hCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEE
Q 043039 241 DPFDVFRVWKAIIENLD--GYTPDL---GELNTLHQLINNR-IGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKIL 314 (949)
Q Consensus 241 ~~~~~~~~~~~i~~~l~--~~~~~~---~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 314 (949)
...+-..+-.+-++..+ ...... ++.+.+.+.+... ..+++-++|+|+++.......+.+...+..-. .+.+|
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fI 157 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLI 157 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEE
Confidence 10000000011111111 000011 1222222222211 23556699999998877777888888885544 44555
Q ss_pred EEccc-hhhHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHH
Q 043039 315 VTTRK-ETVARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTI 383 (949)
Q Consensus 315 vTtr~-~~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 383 (949)
++|.+ ..+...+ .....+++.++++++..+.+.+...... . ......++..++|.|..+..+
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~---~----~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI---L----NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc---c----hhHHHHHHHHcCCCHHHHHHH
Confidence 55544 4444443 3367899999999999999988642111 0 111357788899999765543
No 154
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.72 E-value=4.4e-05 Score=54.29 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=29.7
Q ss_pred CceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccc
Q 043039 587 TCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELP 629 (949)
Q Consensus 587 ~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp 629 (949)
++|++|++++|. +..+|..+++|++|++|++++|.++.+|
T Consensus 1 ~~L~~L~l~~N~---i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQ---ITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS----SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCC---CcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 367888888887 7777777888888888888888877665
No 155
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.71 E-value=0.00037 Score=83.91 Aligned_cols=155 Identities=21% Similarity=0.238 Sum_probs=85.4
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcc---ccccc-ceEEEEEeCCCCCHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDAD---VSNNF-NVMIWVCVSDPFDVFRVW 249 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~~~~~~~~~~~ 249 (949)
..++||++++++++..|.... ..-+.++|++|+|||++|+.+..... +...+ ...+|. ++ ...
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~~----~~~-- 248 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-LD----MGS-- 248 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-ec----HHH--
Confidence 358999999999999986543 23457999999999999998877521 11111 223332 11 111
Q ss_pred HHHHHhcCCCCCCCcchHHHHHHHHhhh-CCceEEEEEeCCCCCC---------cccHHHHHHhhhccCCC-cEEEEEcc
Q 043039 250 KAIIENLDGYTPDLGELNTLHQLINNRI-GGKKVLLVLDDVWTED---------GNKWESFQRCLINAHRG-SKILVTTR 318 (949)
Q Consensus 250 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~g-s~iivTtr 318 (949)
+.. + .....+.+.....+.+.+ ..++.+|++|++..-. .+..+.+...+. .| -++|-+|.
T Consensus 249 --l~a---~-~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~IgaTt 319 (731)
T TIGR02639 249 --LLA---G-TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRCIGSTT 319 (731)
T ss_pred --Hhh---h-ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEEEEecC
Confidence 111 0 001122333333333333 3468899999995321 011222333332 23 34555555
Q ss_pred chhhHh------hh-cCcceEeCCCCChHhHHHHHHHHh
Q 043039 319 KETVAR------MI-GSTCVISIEELSEPECWSLFKRFA 350 (949)
Q Consensus 319 ~~~v~~------~~-~~~~~~~l~~l~~~~~~~l~~~~~ 350 (949)
..+... .+ .....+.+..++.++..+++....
T Consensus 320 ~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 320 YEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 432211 11 123578999999999999998654
No 156
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.70 E-value=0.0016 Score=70.41 Aligned_cols=137 Identities=18% Similarity=0.226 Sum_probs=83.7
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccccccc--eEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhh
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVSNNFN--VMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRI 277 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 277 (949)
....+.|||..|.|||.|++++.+. ...... .+++++. .....+++..+.. .-.+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~~s------e~f~~~~v~a~~~---------~~~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYLTS------EDFTNDFVKALRD---------NEMEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEeccH------HHHHHHHHHHHHh---------hhHHHHHHhh
Confidence 4678999999999999999999986 333333 3444332 2344444444322 1123344443
Q ss_pred CCceEEEEEeCCCCCCc-cc-HHHHHHhhhc-cCCCcEEEEEccc---------hhhHhhhcCcceEeCCCCChHhHHHH
Q 043039 278 GGKKVLLVLDDVWTEDG-NK-WESFQRCLIN-AHRGSKILVTTRK---------ETVARMIGSTCVISIEELSEPECWSL 345 (949)
Q Consensus 278 ~~~~~LlVlDdv~~~~~-~~-~~~l~~~l~~-~~~gs~iivTtr~---------~~v~~~~~~~~~~~l~~l~~~~~~~l 345 (949)
.-=++++||++--.. +. -+++...+.. ...|..||+|++. +.+...+...-.+++.+.+.+....+
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 233899999964211 11 2234443332 2234489999965 23334445567899999999999999
Q ss_pred HHHHhhccCC
Q 043039 346 FKRFAFLNRS 355 (949)
Q Consensus 346 ~~~~~~~~~~ 355 (949)
+.+++...+.
T Consensus 253 L~kka~~~~~ 262 (408)
T COG0593 253 LRKKAEDRGI 262 (408)
T ss_pred HHHHHHhcCC
Confidence 9998755443
No 157
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.70 E-value=4.7e-05 Score=81.87 Aligned_cols=61 Identities=23% Similarity=0.388 Sum_probs=27.9
Q ss_pred CCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeeccc-CCcccch
Q 043039 563 AKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFV-GIEELPE 630 (949)
Q Consensus 563 ~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~-~i~~lp~ 630 (949)
|.+++.|++++|.+..+|. + -.+|+.|.+++|.. +..+|+.+ ..+|++|++++| .+..+|.
T Consensus 51 ~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~n--LtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV-L--PNELTEITIENCNN--LTTLPGSI--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred hcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCC--cccCCchh--hhhhhheEccCccccccccc
Confidence 4455555555555554442 1 11355555555443 34444333 134555555554 3444443
No 158
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.67 E-value=0.00016 Score=67.00 Aligned_cols=96 Identities=20% Similarity=0.132 Sum_probs=52.7
Q ss_pred EEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCC-ceE
Q 043039 204 ISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGG-KKV 282 (949)
Q Consensus 204 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~ 282 (949)
|.|+|++|+||||+|+.+++... ..++.++.+.-. .. ........+...+.+.-.. ++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~-----~~~~~i~~~~~~--------------~~-~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG-----FPFIEIDGSELI--------------SS-YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT-----SEEEEEETTHHH--------------TS-STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhcc-----cccccccccccc--------------cc-cccccccccccccccccccccce
Confidence 57999999999999999998632 123444444211 00 1111222233333332223 489
Q ss_pred EEEEeCCCCCCccc-----------HHHHHHhhhccC---CCcEEEEEccc
Q 043039 283 LLVLDDVWTEDGNK-----------WESFQRCLINAH---RGSKILVTTRK 319 (949)
Q Consensus 283 LlVlDdv~~~~~~~-----------~~~l~~~l~~~~---~gs~iivTtr~ 319 (949)
+|++||++...... ...+...+.... .+..||.||..
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 99999996543222 334444444332 23566667766
No 159
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.00098 Score=71.45 Aligned_cols=97 Identities=13% Similarity=0.134 Sum_probs=67.5
Q ss_pred CceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccch-hhHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCC
Q 043039 279 GKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKE-TVARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSR 356 (949)
Q Consensus 279 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 356 (949)
+++-++|+|+++.......+.+...+..-..++.+|+||.+. .+...+ .....+.+.+++.+++.+.+......
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~---- 180 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE---- 180 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc----
Confidence 334455779999888788888888887666677788887774 333333 33568999999999999988765311
Q ss_pred CCchhHHHHHHHHHHhcCCCchHHHHH
Q 043039 357 SDCKQLEEIGRKITWKCKGLPLAVKTI 383 (949)
Q Consensus 357 ~~~~~~~~~~~~i~~~~~g~Plal~~~ 383 (949)
.. .+.+..++..++|.|.....+
T Consensus 181 ~~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 SD----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CC----hHHHHHHHHHcCCCHHHHHHH
Confidence 11 233456788999999755544
No 160
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=8.4e-06 Score=80.98 Aligned_cols=77 Identities=25% Similarity=0.212 Sum_probs=42.6
Q ss_pred eeEEEeCCccccccccccc--ccc-CCCCCCeeeecccCCcc---cchhhcCCCCCcEEeecCCCCC---CccccccccC
Q 043039 589 LRALRIGKYGDDAIERIPN--GIE-KLIHLRYLKLFFVGIEE---LPETFCELFNLQNLDLRRCSKF---KRLPQNIGKL 659 (949)
Q Consensus 589 Lr~L~L~~~~~~~~~~lp~--~i~-~l~~L~~L~L~~~~i~~---lp~~l~~L~~L~~L~L~~~~~l---~~lp~~i~~L 659 (949)
+..|.+.++. +...-+ .++ ...+++.|||.+|.|+. +-.-+.+|+.|++|+|+.|+.. ..+| -.+
T Consensus 47 ~ellvln~~~---id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~ 120 (418)
T KOG2982|consen 47 LELLVLNGSI---IDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPL 120 (418)
T ss_pred hhhheecCCC---CCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccc
Confidence 3455566665 322211 232 46678888888888773 3344457777788888776621 1122 233
Q ss_pred CCCCeeeCCCcc
Q 043039 660 VNLRHLIFDEDD 671 (949)
Q Consensus 660 ~~L~~L~l~~~~ 671 (949)
.+|+.|-++++.
T Consensus 121 ~nl~~lVLNgT~ 132 (418)
T KOG2982|consen 121 KNLRVLVLNGTG 132 (418)
T ss_pred cceEEEEEcCCC
Confidence 455555555543
No 161
>PRK10536 hypothetical protein; Provisional
Probab=97.62 E-value=0.001 Score=67.14 Aligned_cols=136 Identities=16% Similarity=0.198 Sum_probs=77.3
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEe----CC-----CCC
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCV----SD-----PFD 244 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~----~~-----~~~ 244 (949)
..+.+|......+..++... .++.+.|++|+|||+||.++..+.-..+.|+.++-..- ++ +-+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 44778889999999988532 38999999999999999887664222334554443211 11 112
Q ss_pred HHHH----HHHHHHhcCCCCCCCcchHHHHH----H----HHhhhCCceE---EEEEeCCCCCCcccHHHHHHhhhccCC
Q 043039 245 VFRV----WKAIIENLDGYTPDLGELNTLHQ----L----INNRIGGKKV---LLVLDDVWTEDGNKWESFQRCLINAHR 309 (949)
Q Consensus 245 ~~~~----~~~i~~~l~~~~~~~~~~~~~~~----~----l~~~l~~~~~---LlVlDdv~~~~~~~~~~l~~~l~~~~~ 309 (949)
..+- +..+...+..-.. ....+.... . =..+++++.+ +||+|++.+.+. ..+...+...+.
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~~-~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~---~~~k~~ltR~g~ 202 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRLG-ASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA---AQMKMFLTRLGE 202 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH---HHHHHHHhhcCC
Confidence 2221 2222222211000 001111110 0 0145667665 999999977654 445555666678
Q ss_pred CcEEEEEccchh
Q 043039 310 GSKILVTTRKET 321 (949)
Q Consensus 310 gs~iivTtr~~~ 321 (949)
+|++|+|--..+
T Consensus 203 ~sk~v~~GD~~Q 214 (262)
T PRK10536 203 NVTVIVNGDITQ 214 (262)
T ss_pred CCEEEEeCChhh
Confidence 999999976543
No 162
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.61 E-value=0.0022 Score=77.82 Aligned_cols=166 Identities=15% Similarity=0.134 Sum_probs=87.1
Q ss_pred cCccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 043039 173 VSEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAI 252 (949)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 252 (949)
..+++|.++..+++.+++............++.++|++|+|||++|+.+.+. ....|- -++++...+..++...
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~~---~i~~~~~~~~~~i~g~- 392 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKFV---RFSLGGVRDEAEIRGH- 392 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCeE---EEeCCCcccHHHHcCC-
Confidence 3458899999999998765321111223357999999999999999999885 222332 2223332233222110
Q ss_pred HHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcc----cHHHHHHhhhcc---------------CCCcEE
Q 043039 253 IENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGN----KWESFQRCLINA---------------HRGSKI 313 (949)
Q Consensus 253 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~l~~~---------------~~gs~i 313 (949)
.... .......+.+.+...-.. +-+|+||+++..... ..+.+...+.+. ..+.-+
T Consensus 393 ----~~~~-~g~~~g~i~~~l~~~~~~-~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~ 466 (775)
T TIGR00763 393 ----RRTY-VGAMPGRIIQGLKKAKTK-NPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIF 466 (775)
T ss_pred ----CCce-eCCCCchHHHHHHHhCcC-CCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEE
Confidence 0000 001122233344433233 337899999654221 123333333210 012334
Q ss_pred EEEccchh-hHhh-hcCcceEeCCCCChHhHHHHHHHHh
Q 043039 314 LVTTRKET-VARM-IGSTCVISIEELSEPECWSLFKRFA 350 (949)
Q Consensus 314 ivTtr~~~-v~~~-~~~~~~~~l~~l~~~~~~~l~~~~~ 350 (949)
|.||.... +... .....++++.+++.++-.+++..+.
T Consensus 467 I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 467 IATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 44554422 1111 1234588999999988888887654
No 163
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.59 E-value=0.0032 Score=62.42 Aligned_cols=179 Identities=16% Similarity=0.214 Sum_probs=107.7
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEe-CCCCCHHHHHHHHHHhcCCCCCCCcchHH----HHHHHH
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCV-SDPFDVFRVWKAIIENLDGYTPDLGELNT----LHQLIN 274 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~----~~~~l~ 274 (949)
+.+++.++|.-|.|||.+++...... .+ +.++-+.+ ....+...+...++..+... ..+.... ..+.+.
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~--~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~--p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASL--NE--DQVAVVVIDKPTLSDATLLEAIVADLESQ--PKVNVNAVLEQIDRELA 123 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhc--CC--CceEEEEecCcchhHHHHHHHHHHHhccC--ccchhHHHHHHHHHHHH
Confidence 45699999999999999999443321 01 11111223 34466777888888888762 2223332 333333
Q ss_pred hhh-CCce-EEEEEeCCCCCCcccHHHHHHhhhccCCCc---EEEEEccch-------hhHhhhc-Ccce-EeCCCCChH
Q 043039 275 NRI-GGKK-VLLVLDDVWTEDGNKWESFQRCLINAHRGS---KILVTTRKE-------TVARMIG-STCV-ISIEELSEP 340 (949)
Q Consensus 275 ~~l-~~~~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs---~iivTtr~~-------~v~~~~~-~~~~-~~l~~l~~~ 340 (949)
+.. +++| ..+++|++.....+..+.++....-...++ +|+.....+ .+..... .... |++.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 333 4677 999999998776666666654432222222 244433221 1111111 1223 899999999
Q ss_pred hHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHHh
Q 043039 341 ECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIGS 385 (949)
Q Consensus 341 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 385 (949)
+...++..+..+... .++---.+....|.....|.|.++..++.
T Consensus 204 ~t~~yl~~~Le~a~~-~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 204 ETGLYLRHRLEGAGL-PEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHhccCC-CcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 999999888766533 22233355667788899999999987764
No 164
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.59 E-value=0.00065 Score=82.92 Aligned_cols=155 Identities=19% Similarity=0.201 Sum_probs=85.0
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcc---ccccc-ceEEEEEeCCCCCHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDAD---VSNNF-NVMIWVCVSDPFDVFRVW 249 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~~~~~~~~~~~ 249 (949)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.++.... +.... ...+|. + +...+
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l- 246 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLL- 246 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHH-
Confidence 358999999999999997543 22456999999999999988876421 11111 233442 1 11111
Q ss_pred HHHHHhcCCCCCCCcchHHHHHHHH-hhhCCceEEEEEeCCCCC-------CcccHHH-HHHhhhccCCCcEEEEEccch
Q 043039 250 KAIIENLDGYTPDLGELNTLHQLIN-NRIGGKKVLLVLDDVWTE-------DGNKWES-FQRCLINAHRGSKILVTTRKE 320 (949)
Q Consensus 250 ~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~-------~~~~~~~-l~~~l~~~~~gs~iivTtr~~ 320 (949)
+.+. .-..+.+.....+. +.-..++.+|++|++..- ....... +...+..+ .-++|-+|...
T Consensus 247 ------~ag~-~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--~l~~IgaTt~~ 317 (821)
T CHL00095 247 ------LAGT-KYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--ELQCIGATTLD 317 (821)
T ss_pred ------hccC-CCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--CcEEEEeCCHH
Confidence 1111 11122333333232 222356899999999421 0011222 22222221 24566666655
Q ss_pred hhHhh------h-cCcceEeCCCCChHhHHHHHHHH
Q 043039 321 TVARM------I-GSTCVISIEELSEPECWSLFKRF 349 (949)
Q Consensus 321 ~v~~~------~-~~~~~~~l~~l~~~~~~~l~~~~ 349 (949)
+.... + .....+.+...+.++...++...
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 43221 1 22357888888999988887653
No 165
>PRK08116 hypothetical protein; Validated
Probab=97.59 E-value=0.00034 Score=72.89 Aligned_cols=103 Identities=24% Similarity=0.233 Sum_probs=60.2
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCce
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKK 281 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 281 (949)
..+.++|.+|+|||.||..+++.... ....++++++ .+++..+........ ..... .+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~--~~~~v~~~~~------~~ll~~i~~~~~~~~--~~~~~----~~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIE--KGVPVIFVNF------PQLLNRIKSTYKSSG--KEDEN----EIIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEEH------HHHHHHHHHHHhccc--cccHH----HHHHHhcCCC
Confidence 35889999999999999999987322 2344666653 345555544433211 11112 2223334334
Q ss_pred EEEEEeCCCCCCcccHHH--HHHhhhc-cCCCcEEEEEccc
Q 043039 282 VLLVLDDVWTEDGNKWES--FQRCLIN-AHRGSKILVTTRK 319 (949)
Q Consensus 282 ~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iivTtr~ 319 (949)
||||||+..+...+|.. +...+.. -.+|..+||||..
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999996544445544 3333332 2355679999875
No 166
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.0019 Score=75.23 Aligned_cols=123 Identities=20% Similarity=0.303 Sum_probs=75.8
Q ss_pred CccccchhHHHHHHHHHccCCCC---CCCCeEEEEEEecCCChHHHHHHHHHcCccccccc---ceEEEEEeCCCCCHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAE---QPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNF---NVMIWVCVSDPFDVFR 247 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~~~~~~ 247 (949)
..++|-+..+..+.+.+.....+ ......+....|+.|||||.||+++... -| +..+-+++|..-.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMSEy~E--- 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMSEYME--- 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechHHHHH---
Confidence 35889999999999887654332 2345578888999999999999988764 33 4445445443211
Q ss_pred HHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceE-EEEEeCCCCCCcccHHHHHHhhhcc
Q 043039 248 VWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKV-LLVLDDVWTEDGNKWESFQRCLINA 307 (949)
Q Consensus 248 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~~~~~~~~l~~~l~~~ 307 (949)
+.-+..|-+..+.---.++ --.+-+..+.++| +|.||++....++.++-+...|.++
T Consensus 563 --kHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 563 --KHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred --HHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 1122333333332211111 1233344556777 9999999887777777777777554
No 167
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=9.4e-07 Score=87.58 Aligned_cols=163 Identities=17% Similarity=0.129 Sum_probs=115.7
Q ss_pred CCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCCCCCC---CC
Q 043039 744 NLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMPP---LG 820 (949)
Q Consensus 744 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~---l~ 820 (949)
.|+.|+++...+.- ..+...++++.+|+.|.|.|+.+...+-..+..-.+|+.|+|+.|.-...... +.
T Consensus 186 Rlq~lDLS~s~it~--------stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~ 257 (419)
T KOG2120|consen 186 RLQHLDLSNSVITV--------STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLS 257 (419)
T ss_pred hhHHhhcchhheeH--------HHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHH
Confidence 57778887765542 23556678899999999999998876666677889999999999965443222 67
Q ss_pred CCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceeeeccccccccccccccccccccccceeccccCccCcCC-CCCC
Q 043039 821 KLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKML-PDQV 899 (949)
Q Consensus 821 ~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~ 899 (949)
++..|..|+|+.|............ .--++|+.|.++++-.+-.......-...+|+|..|+|++|..++.- -..+
T Consensus 258 scs~L~~LNlsWc~l~~~~Vtv~V~---hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~ 334 (419)
T KOG2120|consen 258 SCSRLDELNLSWCFLFTEKVTVAVA---HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 334 (419)
T ss_pred hhhhHhhcCchHhhccchhhhHHHh---hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH
Confidence 8999999999988743322111111 13467899999887655433322222447999999999999888731 1235
Q ss_pred CCCCCcceEEEccCCChh
Q 043039 900 LRSTTLKKLEINDCPILE 917 (949)
Q Consensus 900 ~~l~~L~~L~l~~c~~l~ 917 (949)
..++.|++|.++.|-.+.
T Consensus 335 ~kf~~L~~lSlsRCY~i~ 352 (419)
T KOG2120|consen 335 FKFNYLQHLSLSRCYDII 352 (419)
T ss_pred HhcchheeeehhhhcCCC
Confidence 578899999999998763
No 168
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.54 E-value=0.00049 Score=64.60 Aligned_cols=88 Identities=22% Similarity=0.131 Sum_probs=47.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCc-
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGK- 280 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~- 280 (949)
+.+.|+|++|+||||+|+.+...... ....+++++.+........... ....... ............+.+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP--PGGGVIYIDGEDILEEVLDQLL-LIIVGGK-KASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC--CCCCEEEECCEEccccCHHHHH-hhhhhcc-CCCCCHHHHHHHHHHHHHhcC
Confidence 47899999999999999999886322 2134566655543322222111 0111111 11111222222333333333
Q ss_pred eEEEEEeCCCCCC
Q 043039 281 KVLLVLDDVWTED 293 (949)
Q Consensus 281 ~~LlVlDdv~~~~ 293 (949)
..+|++|+++...
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 4899999997754
No 169
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.51 E-value=2.2e-05 Score=68.94 Aligned_cols=93 Identities=17% Similarity=0.314 Sum_probs=80.4
Q ss_pred ccCCCCceEEEecCCCCCCcchhh-ccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccchhhcCCCCC
Q 043039 560 IFNAKKLRSLLIQGYSLQHMPSFF-DQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPETFCELFNL 638 (949)
Q Consensus 560 ~~~~~~Lr~L~l~~~~l~~l~~~~-~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L 638 (949)
+....+|...++++|.++.+|..| ..++.++.|+|++|. +..+|..+..++.|+.|+++.|.+..+|..+..|.+|
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne---isdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l 125 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE---ISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKL 125 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh---hhhchHHHhhhHHhhhcccccCccccchHHHHHHHhH
Confidence 445677888899999999888755 456789999999998 9999999999999999999999999999999999999
Q ss_pred cEEeecCCCCCCcccccc
Q 043039 639 QNLDLRRCSKFKRLPQNI 656 (949)
Q Consensus 639 ~~L~L~~~~~l~~lp~~i 656 (949)
-.|+..++. ...+|.++
T Consensus 126 ~~Lds~~na-~~eid~dl 142 (177)
T KOG4579|consen 126 DMLDSPENA-RAEIDVDL 142 (177)
T ss_pred HHhcCCCCc-cccCcHHH
Confidence 999999877 77777653
No 170
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.51 E-value=4.6e-06 Score=92.49 Aligned_cols=118 Identities=22% Similarity=0.268 Sum_probs=66.9
Q ss_pred ceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccchh-hcCCCCCcEEeec
Q 043039 566 LRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPET-FCELFNLQNLDLR 644 (949)
Q Consensus 566 Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-l~~L~~L~~L~L~ 644 (949)
|.+.++++|.+..+...+.-++.|+.|+|+.|. +... +.+..|++|+.|||++|.+..+|.- ...+ +|+.|+++
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk---~~~v-~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNK---FTKV-DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhh---hhhh-HHHHhcccccccccccchhccccccchhhh-hheeeeec
Confidence 334444444444444555556667777777776 3333 2466677777777777776666531 2223 27777777
Q ss_pred CCCCCCccccccccCCCCCeeeCCCcccccCCc--CCCCCCCCcccCc
Q 043039 645 RCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPK--GMGSLTGLRTLSE 690 (949)
Q Consensus 645 ~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~--~i~~l~~L~~L~~ 690 (949)
+|. +.+|- +|.+|.+|++||++.|-+....+ -+..|..|..|.+
T Consensus 241 nN~-l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~L 286 (1096)
T KOG1859|consen 241 NNA-LTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWL 286 (1096)
T ss_pred ccH-HHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhh
Confidence 665 55553 56677777777766665543321 1344555555553
No 171
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.0038 Score=66.25 Aligned_cols=96 Identities=9% Similarity=0.086 Sum_probs=68.0
Q ss_pred CceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccc-hhhHhhhc-CcceEeCCCCChHhHHHHHHHHhhccCCC
Q 043039 279 GKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRK-ETVARMIG-STCVISIEELSEPECWSLFKRFAFLNRSR 356 (949)
Q Consensus 279 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~-~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 356 (949)
+++=++|+|+++......-+.+...+..-..++.+|++|.. ..+...+. ....+.+.+++.+++.+.+....
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~------ 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG------ 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC------
Confidence 45669999999887777777788888766667777777765 44444433 35688999999999998886531
Q ss_pred CCchhHHHHHHHHHHhcCCCchHHHHHH
Q 043039 357 SDCKQLEEIGRKITWKCKGLPLAVKTIG 384 (949)
Q Consensus 357 ~~~~~~~~~~~~i~~~~~g~Plal~~~~ 384 (949)
.+ ...+..++..++|.|+....+.
T Consensus 186 ~~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 186 VS----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CC----hHHHHHHHHHcCCCHHHHHHHh
Confidence 11 2225667889999998665443
No 172
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.49 E-value=0.0009 Score=77.35 Aligned_cols=51 Identities=14% Similarity=0.255 Sum_probs=40.6
Q ss_pred cCccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 173 VSEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..+++|-++.++++..|+..... .....+++.|+|++|+||||+++.+...
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35699999999999999865432 1223468999999999999999999875
No 173
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.48 E-value=0.0012 Score=74.35 Aligned_cols=167 Identities=13% Similarity=0.183 Sum_probs=90.1
Q ss_pred CccccchhHHHHHHHHHccCCC-------CCCCCeEEEEEEecCCChHHHHHHHHHcCccccc---ccceEEEEEeCCCC
Q 043039 174 SEVCGRNEEKNALKGKLLSETA-------EQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSN---NFNVMIWVCVSDPF 243 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~f~~~~wv~~~~~~ 243 (949)
.++.|.+..++++.+.+...-. .+-...+-+.++|++|+|||++|+++++...... .+....|+.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 4577899999998887642110 0112345688999999999999999998632110 1123444444331
Q ss_pred CHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhh-hCCceEEEEEeCCCCCC-------cccH-----HHHHHhhhcc--C
Q 043039 244 DVFRVWKAIIENLDGYTPDLGELNTLHQLINNR-IGGKKVLLVLDDVWTED-------GNKW-----ESFQRCLINA--H 308 (949)
Q Consensus 244 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~-------~~~~-----~~l~~~l~~~--~ 308 (949)
+++....+. .......+.+..++. -.+++++|+||+++..- ..+. ..+...+... .
T Consensus 261 -------eLl~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 261 -------ELLNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred -------hhcccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 111111000 001122222222222 23578999999996420 0111 1232223221 1
Q ss_pred CCcEEEEEccchhhHh-hh----cCcceEeCCCCChHhHHHHHHHHh
Q 043039 309 RGSKILVTTRKETVAR-MI----GSTCVISIEELSEPECWSLFKRFA 350 (949)
Q Consensus 309 ~gs~iivTtr~~~v~~-~~----~~~~~~~l~~l~~~~~~~l~~~~~ 350 (949)
.+..||.||....... .+ .-+..+++...+.++..++|.++.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 3444555665443322 11 114568999999999999999886
No 174
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.47 E-value=0.0015 Score=62.57 Aligned_cols=139 Identities=20% Similarity=0.217 Sum_probs=79.4
Q ss_pred cchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCc----ccc--------------cccceEEEEEe
Q 043039 178 GRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDA----DVS--------------NNFNVMIWVCV 239 (949)
Q Consensus 178 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~----~~~--------------~~f~~~~wv~~ 239 (949)
|-++..+.|.+.+.... -.+.+.++|+.|+||+++|..+.+.. ... +...-+.|+..
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 55667777888776433 34578999999999999998775431 110 12223344433
Q ss_pred CCC---CCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEE
Q 043039 240 SDP---FDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVT 316 (949)
Q Consensus 240 ~~~---~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT 316 (949)
... ..+.++ +++...+.... ..+++=++|+||++......++.+...+..-..++++|++
T Consensus 76 ~~~~~~i~i~~i-r~i~~~~~~~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~ 138 (162)
T PF13177_consen 76 DKKKKSIKIDQI-REIIEFLSLSP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILI 138 (162)
T ss_dssp TTSSSSBSHHHH-HHHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEE
T ss_pred ccccchhhHHHH-HHHHHHHHHHH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEE
Confidence 322 222222 13333322211 1234568999999988888899999999888888999998
Q ss_pred ccchh-hHhhh-cCcceEeCCCCC
Q 043039 317 TRKET-VARMI-GSTCVISIEELS 338 (949)
Q Consensus 317 tr~~~-v~~~~-~~~~~~~l~~l~ 338 (949)
|++.. +...+ .....+.+.++|
T Consensus 139 t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 139 TNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp ES-GGGS-HHHHTTSEEEEE----
T ss_pred ECChHHChHHHHhhceEEecCCCC
Confidence 88744 34333 234566666553
No 175
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.45 E-value=0.0011 Score=79.55 Aligned_cols=166 Identities=16% Similarity=0.155 Sum_probs=90.8
Q ss_pred cCccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 043039 173 VSEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAI 252 (949)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 252 (949)
+...+|.++..++|.++|............++.++|++|+||||+|+.+... ....|- -++.+...+..++...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~~---~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKYV---RMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCEE---EEEcCCCCCHHHhccch
Confidence 4568999999999999886322111223457999999999999999999874 222332 23333333332221111
Q ss_pred HHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCccc----HHHHHHhhhccC---------------CCcEE
Q 043039 253 IENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNK----WESFQRCLINAH---------------RGSKI 313 (949)
Q Consensus 253 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~----~~~l~~~l~~~~---------------~gs~i 313 (949)
....+. ....+.+.+.+.- ...-+++||.++...... .+.+...+.+.. .+.-+
T Consensus 396 ~~~~g~------~~G~~~~~l~~~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 RTYIGS------MPGKLIQKMAKVG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred hccCCC------CCcHHHHHHHhcC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 011111 1122333343322 233478999996543221 344555443211 23334
Q ss_pred EEEccchhhHhh-hcCcceEeCCCCChHhHHHHHHHHh
Q 043039 314 LVTTRKETVARM-IGSTCVISIEELSEPECWSLFKRFA 350 (949)
Q Consensus 314 ivTtr~~~v~~~-~~~~~~~~l~~l~~~~~~~l~~~~~ 350 (949)
|.|+....+... .+...++++.+++.++-.++..++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 445544332222 1234578899999999888887765
No 176
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.44 E-value=0.001 Score=81.54 Aligned_cols=156 Identities=18% Similarity=0.209 Sum_probs=83.5
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCccccc---c-cce-EEEEEeCCCCCHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSN---N-FNV-MIWVCVSDPFDVFRV 248 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~-f~~-~~wv~~~~~~~~~~~ 248 (949)
..++||+.++.+++..|.... ..-+.++|++|+|||++|+.+........ . ... ++.++++ .
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~------~- 239 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG------A- 239 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH------H-
Confidence 349999999999999996543 23456899999999999998876521110 0 112 2222221 1
Q ss_pred HHHHHHhcCCCCCCCcchHHHHHHHHhhh-C-CceEEEEEeCCCCCC-----cccHHHHHHhh-hccCCC-cEEEEEccc
Q 043039 249 WKAIIENLDGYTPDLGELNTLHQLINNRI-G-GKKVLLVLDDVWTED-----GNKWESFQRCL-INAHRG-SKILVTTRK 319 (949)
Q Consensus 249 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~-~~~~LlVlDdv~~~~-----~~~~~~l~~~l-~~~~~g-s~iivTtr~ 319 (949)
++. + .....+.+.....+.+.+ + +++.+|++|++..-. ....+ ....+ +....| -++|-+|..
T Consensus 240 ---l~a---~-~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d-~~~~Lk~~l~~g~i~~IgaTt~ 311 (852)
T TIGR03346 240 ---LIA---G-AKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMD-AGNMLKPALARGELHCIGATTL 311 (852)
T ss_pred ---Hhh---c-chhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhH-HHHHhchhhhcCceEEEEeCcH
Confidence 110 0 001112222222222222 2 468999999996421 00111 11112 222233 345555554
Q ss_pred hhhHhh-------hcCcceEeCCCCChHhHHHHHHHHh
Q 043039 320 ETVARM-------IGSTCVISIEELSEPECWSLFKRFA 350 (949)
Q Consensus 320 ~~v~~~-------~~~~~~~~l~~l~~~~~~~l~~~~~ 350 (949)
.+.... ......+.+...+.++...++....
T Consensus 312 ~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 312 DEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 433211 1123578899999999999887654
No 177
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0016 Score=73.48 Aligned_cols=167 Identities=18% Similarity=0.205 Sum_probs=96.4
Q ss_pred ccCccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHH
Q 043039 172 NVSEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKA 251 (949)
Q Consensus 172 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 251 (949)
-+.+-+|-++..++|++.|.-......-+-++++++|++|+|||.|++.++.. ....|-. ++++.-.|..++-..
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~a--l~RkfvR---~sLGGvrDEAEIRGH 395 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKA--LGRKFVR---ISLGGVRDEAEIRGH 395 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHH--hCCCEEE---EecCccccHHHhccc
Confidence 45668899999999999985332222334579999999999999999999885 4444422 233333333221110
Q ss_pred HHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCC----cccHHHHHHhhhcc-C------------CCcEE-
Q 043039 252 IIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTED----GNKWESFQRCLINA-H------------RGSKI- 313 (949)
Q Consensus 252 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----~~~~~~l~~~l~~~-~------------~gs~i- 313 (949)
=-..++ .=...+.+.+++. +.+.=+++||.++... .+.-..+...|.+. + .=|.|
T Consensus 396 RRTYIG------amPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 396 RRTYIG------AMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred cccccc------cCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 000000 1123344444443 4556699999996532 12233344444321 1 11333
Q ss_pred EEEccc-hh-h-HhhhcCcceEeCCCCChHhHHHHHHHHh
Q 043039 314 LVTTRK-ET-V-ARMIGSTCVISIEELSEPECWSLFKRFA 350 (949)
Q Consensus 314 ivTtr~-~~-v-~~~~~~~~~~~l~~l~~~~~~~l~~~~~ 350 (949)
-|||-+ -+ + +..++...++++.+-+++|=.++-+++.
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 344443 22 2 2234557799999999999888777765
No 178
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.43 E-value=0.0025 Score=70.17 Aligned_cols=158 Identities=15% Similarity=0.163 Sum_probs=87.8
Q ss_pred CccccchhHHHHHHHHHccCCC-------CCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETA-------EQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVF 246 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 246 (949)
.++.|-+..+++|.+.+...-. -+-...+-+.++|++|+|||++|+.+++. ....| +.+..+
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f---i~i~~s------ 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF---IRVVGS------ 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEehH------
Confidence 4588998888888876532110 01123567889999999999999999986 22232 222111
Q ss_pred HHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCC----------cccHH-HHHHhh---hc--cCCC
Q 043039 247 RVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTED----------GNKWE-SFQRCL---IN--AHRG 310 (949)
Q Consensus 247 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~~~~-~l~~~l---~~--~~~g 310 (949)
. +.....+. ....+.+.+.......+.+|+||+++... ..... .+...+ .. ...+
T Consensus 214 ~----l~~k~~ge-----~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~ 284 (398)
T PTZ00454 214 E----FVQKYLGE-----GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTN 284 (398)
T ss_pred H----HHHHhcch-----hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCC
Confidence 1 11111110 11122223333334678999999985310 00111 122222 21 2245
Q ss_pred cEEEEEccchhhHhh-h----cCcceEeCCCCChHhHHHHHHHHhh
Q 043039 311 SKILVTTRKETVARM-I----GSTCVISIEELSEPECWSLFKRFAF 351 (949)
Q Consensus 311 s~iivTtr~~~v~~~-~----~~~~~~~l~~l~~~~~~~l~~~~~~ 351 (949)
..||.||........ + .-+..+.+...+.++...+|..+..
T Consensus 285 v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~ 330 (398)
T PTZ00454 285 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITS 330 (398)
T ss_pred EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHh
Confidence 678888876443321 1 1245788988899998888887653
No 179
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.42 E-value=0.0017 Score=78.81 Aligned_cols=136 Identities=21% Similarity=0.312 Sum_probs=78.5
Q ss_pred CccccchhHHHHHHHHHccCCC---CCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETA---EQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWK 250 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 250 (949)
..++|.+..++.+.+.+..... .......++.++|+.|+|||.+|+.+... ..+.....+-++++...+. .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~----~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA----H 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh----h
Confidence 5689999999999998854311 12234568899999999999999887664 2111222333333321111 1
Q ss_pred HHHHhcCCCCCCC---cchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccC-----------CCcEEEEE
Q 043039 251 AIIENLDGYTPDL---GELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAH-----------RGSKILVT 316 (949)
Q Consensus 251 ~i~~~l~~~~~~~---~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivT 316 (949)
. ...+-+..+.- .+...+...+++ ...-+|+||++...++..++.+...+..+. ..+-||+|
T Consensus 640 ~-~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 640 T-VSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred h-hccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 1 11222221111 112223333333 345699999998777777777776665542 45667777
Q ss_pred ccc
Q 043039 317 TRK 319 (949)
Q Consensus 317 tr~ 319 (949)
|..
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 653
No 180
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.42 E-value=0.011 Score=63.90 Aligned_cols=212 Identities=12% Similarity=0.109 Sum_probs=124.3
Q ss_pred chhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHH-HHHHcCcccccccceEEEEEeCCC---CCHHHHHHHHHH
Q 043039 179 RNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLA-QLAYNDADVSNNFNVMIWVCVSDP---FDVFRVWKAIIE 254 (949)
Q Consensus 179 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~ 254 (949)
|.+..++|..||.+.. -..|.|.|+-|.||+.|+ .++..+.+ .++.+++.+- .+-..++..++.
T Consensus 1 R~e~~~~L~~wL~e~~------~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP------NTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCC------CeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHH
Confidence 6678999999997654 258999999999999999 77776521 2556655432 122333344444
Q ss_pred hcC-----------------------CCCCC--C---cchHHHH----HHHHh-------------------hhC---Cc
Q 043039 255 NLD-----------------------GYTPD--L---GELNTLH----QLINN-------------------RIG---GK 280 (949)
Q Consensus 255 ~l~-----------------------~~~~~--~---~~~~~~~----~~l~~-------------------~l~---~~ 280 (949)
+++ +.... . ..+..+. ..+++ +|+ .+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 432 11000 0 1111111 11111 111 23
Q ss_pred eEEEEEeCCCCCC---cccHHHHHHhh--hccCCCcEEEEEccchhhHh----hhc--CcceEeCCCCChHhHHHHHHHH
Q 043039 281 KVLLVLDDVWTED---GNKWESFQRCL--INAHRGSKILVTTRKETVAR----MIG--STCVISIEELSEPECWSLFKRF 349 (949)
Q Consensus 281 ~~LlVlDdv~~~~---~~~~~~l~~~l--~~~~~gs~iivTtr~~~v~~----~~~--~~~~~~l~~l~~~~~~~l~~~~ 349 (949)
+=+||+||+-... ...|+.+...- ....+-.+||++|-+..... .+. ....+.+...+.+.|.++...+
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 5689999995432 11233332221 11234567999988755443 332 2467889999999999999988
Q ss_pred hhccCCC------------CC----chhHHHHHHHHHHhcCCCchHHHHHHhhhccCCCHH-HHHHHHhh
Q 043039 350 AFLNRSR------------SD----CKQLEEIGRKITWKCKGLPLAVKTIGSLLRFKKARE-EWQSILDS 402 (949)
Q Consensus 350 ~~~~~~~------------~~----~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~-~w~~~l~~ 402 (949)
....... .. ......-....++.+||--.-|..+++.++.+.++. .-..+.++
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~q 298 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQ 298 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 7543110 00 012444456778899999999999999999887654 34444443
No 181
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0072 Score=68.09 Aligned_cols=167 Identities=16% Similarity=0.180 Sum_probs=95.2
Q ss_pred ccCccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHH
Q 043039 172 NVSEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKA 251 (949)
Q Consensus 172 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 251 (949)
-+.+-+|.++..++|.+++.-..-.+..+-++++.+|++|||||.+|+.|+.. ....| +-++++.-.|+.++-..
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~A--LnRkF---fRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARA--LNRKF---FRFSVGGMTDVAEIKGH 483 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHH--hCCce---EEEeccccccHHhhccc
Confidence 35667899999999999985433223446689999999999999999999875 22233 22345554455442111
Q ss_pred HHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCC----cccHHHHHHhhhcc-C------------CCcEEE
Q 043039 252 IIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTED----GNKWESFQRCLINA-H------------RGSKIL 314 (949)
Q Consensus 252 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----~~~~~~l~~~l~~~-~------------~gs~ii 314 (949)
=-..++ .-...+++.++.. +...=|+.+|.|+... .+.-..+...+.+. + .=|+|+
T Consensus 484 RRTYVG------AMPGkiIq~LK~v-~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVL 556 (906)
T KOG2004|consen 484 RRTYVG------AMPGKIIQCLKKV-KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVL 556 (906)
T ss_pred ceeeec------cCChHHHHHHHhh-CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheE
Confidence 000011 1123344444443 4455688999995421 12223344444221 1 136666
Q ss_pred EEccchhhH----hhhcCcceEeCCCCChHhHHHHHHHHh
Q 043039 315 VTTRKETVA----RMIGSTCVISIEELSEPECWSLFKRFA 350 (949)
Q Consensus 315 vTtr~~~v~----~~~~~~~~~~l~~l~~~~~~~l~~~~~ 350 (949)
+...-..+. .......+|++.+...+|-.++-.++.
T Consensus 557 FicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 557 FICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 533221111 112335688999988888777666665
No 182
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.41 E-value=0.00071 Score=74.97 Aligned_cols=158 Identities=16% Similarity=0.196 Sum_probs=89.2
Q ss_pred CccccchhHHHHHHHHHccCCCC-------CCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAE-------QPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVF 246 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 246 (949)
.++.|.+..+++|.+.+...-.. +-...+-+.++|++|+|||++|+.+++. ....| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecch-----
Confidence 35789999999888876421100 1123456789999999999999999985 33333 2222111
Q ss_pred HHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCC--------Ccc---cHHHHHHhh---hc--cCCC
Q 043039 247 RVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTE--------DGN---KWESFQRCL---IN--AHRG 310 (949)
Q Consensus 247 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--------~~~---~~~~l~~~l---~~--~~~g 310 (949)
+.....+. ....+...+.....+.+.+|+||+++.. ... ....+...+ .. ...+
T Consensus 253 -----L~~k~~Ge-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 253 -----LIQKYLGD-----GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred -----hhhhhcch-----HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 11111110 1111222333333467889999998421 000 011122222 11 1345
Q ss_pred cEEEEEccchhhHhh-h----cCcceEeCCCCChHhHHHHHHHHhh
Q 043039 311 SKILVTTRKETVARM-I----GSTCVISIEELSEPECWSLFKRFAF 351 (949)
Q Consensus 311 s~iivTtr~~~v~~~-~----~~~~~~~l~~l~~~~~~~l~~~~~~ 351 (949)
.+||.||........ + .....+++...+.++..++|..+..
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 678888876444332 1 1246789999999999999998764
No 183
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.41 E-value=0.0017 Score=79.24 Aligned_cols=154 Identities=19% Similarity=0.240 Sum_probs=83.0
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCccccc---c--cceEEEEEeCCCCCHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSN---N--FNVMIWVCVSDPFDVFRV 248 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~--f~~~~wv~~~~~~~~~~~ 248 (949)
..++||+.++.+++..|.... ..-+.++|.+|+|||++|+.+........ . -..+++++++. +
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l 245 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L 245 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------h
Confidence 359999999999999997543 23466999999999999998877521100 0 11233333321 0
Q ss_pred HHHHHHhcCCCCCCCcchHH-HHHHHHhhh-CCceEEEEEeCCCCCCc-----c--cHHH-HHHhhhccCCC-cEEEEEc
Q 043039 249 WKAIIENLDGYTPDLGELNT-LHQLINNRI-GGKKVLLVLDDVWTEDG-----N--KWES-FQRCLINAHRG-SKILVTT 317 (949)
Q Consensus 249 ~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l-~~~~~LlVlDdv~~~~~-----~--~~~~-l~~~l~~~~~g-s~iivTt 317 (949)
+ .+ .....+.+. +...+.+.- .+++.+|++|++..-.. . +... +...+ ..| -++|-+|
T Consensus 246 ----~---ag-~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l---~~g~l~~IgaT 314 (857)
T PRK10865 246 ----V---AG-AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL---ARGELHCVGAT 314 (857)
T ss_pred ----h---hc-cchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh---hcCCCeEEEcC
Confidence 0 00 011112222 222222211 25689999999954210 0 1112 22222 233 3566566
Q ss_pred cchhhHhhh-------cCcceEeCCCCChHhHHHHHHHHh
Q 043039 318 RKETVARMI-------GSTCVISIEELSEPECWSLFKRFA 350 (949)
Q Consensus 318 r~~~v~~~~-------~~~~~~~l~~l~~~~~~~l~~~~~ 350 (949)
...+....+ ...+.+.+...+.++...++....
T Consensus 315 t~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 315 TLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 554432111 113367777778899988886554
No 184
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.41 E-value=0.0055 Score=63.99 Aligned_cols=151 Identities=15% Similarity=0.088 Sum_probs=77.7
Q ss_pred hHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHH--------
Q 043039 181 EEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAI-------- 252 (949)
Q Consensus 181 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i-------- 252 (949)
+.++++..++... +-+.+.|++|+|||++|+.+... .. ...+.+++....+..+++...
T Consensus 9 ~l~~~~l~~l~~g--------~~vLL~G~~GtGKT~lA~~la~~--lg---~~~~~i~~~~~~~~~dllg~~~~~~~~~~ 75 (262)
T TIGR02640 9 RVTSRALRYLKSG--------YPVHLRGPAGTGKTTLAMHVARK--RD---RPVMLINGDAELTTSDLVGSYAGYTRKKV 75 (262)
T ss_pred HHHHHHHHHHhcC--------CeEEEEcCCCCCHHHHHHHHHHH--hC---CCEEEEeCCccCCHHHHhhhhcccchhhH
Confidence 3455555555432 24568999999999999999863 21 234555666555544443221
Q ss_pred ----HHhcCCCCC---CCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhcc----------------CC
Q 043039 253 ----IENLDGYTP---DLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINA----------------HR 309 (949)
Q Consensus 253 ----~~~l~~~~~---~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~----------------~~ 309 (949)
......... ..+....+. ...+ +...+++|++...+.+.+..+...+..+ ++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~g~l~----~A~~-~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~ 150 (262)
T TIGR02640 76 HDQFIHNVVKLEDIVRQNWVDNRLT----LAVR-EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHP 150 (262)
T ss_pred HHHHHHHhhhhhcccceeecCchHH----HHHH-cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCC
Confidence 110000000 000011111 1111 2468999999876666666666666321 13
Q ss_pred CcEEEEEccchhhHh-------hhcCcceEeCCCCChHhHHHHHHHH
Q 043039 310 GSKILVTTRKETVAR-------MIGSTCVISIEELSEPECWSLFKRF 349 (949)
Q Consensus 310 gs~iivTtr~~~v~~-------~~~~~~~~~l~~l~~~~~~~l~~~~ 349 (949)
+.+||+|+....-.. .......+.+...+.++=.+++.++
T Consensus 151 ~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~ 197 (262)
T TIGR02640 151 EFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAK 197 (262)
T ss_pred CCEEEEeeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHh
Confidence 567888887532110 0011224555555555555555554
No 185
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.38 E-value=0.0041 Score=67.25 Aligned_cols=148 Identities=11% Similarity=0.117 Sum_probs=91.4
Q ss_pred ccc-chhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCccccc--------------------ccceE
Q 043039 176 VCG-RNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSN--------------------NFNVM 234 (949)
Q Consensus 176 ~~G-r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------------------~f~~~ 234 (949)
++| -+..++.+...+.... -.+...++|+.|+||||+|+.+.+..--.. |.|.
T Consensus 7 i~~~q~~~~~~L~~~~~~~~-----l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~- 80 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNR-----LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDV- 80 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCE-
Confidence 556 6667788888775432 356789999999999999988754310000 1111
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHh----hhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCC
Q 043039 235 IWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINN----RIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRG 310 (949)
Q Consensus 235 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 310 (949)
.++.... .....+++.+.+.. -..+.+=++|+|++........+.+...+..-..+
T Consensus 81 ~~i~~~~--------------------~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~ 140 (329)
T PRK08058 81 HLVAPDG--------------------QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGG 140 (329)
T ss_pred EEecccc--------------------ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCC
Confidence 1111100 01112222222211 12345558999999877766777888888776677
Q ss_pred cEEEEEccch-hhHhhh-cCcceEeCCCCChHhHHHHHHHH
Q 043039 311 SKILVTTRKE-TVARMI-GSTCVISIEELSEPECWSLFKRF 349 (949)
Q Consensus 311 s~iivTtr~~-~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~ 349 (949)
+.+|++|.+. .+...+ .....+++.+++.++..+.+...
T Consensus 141 ~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 141 TTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred ceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 8788777653 333333 23568999999999998888653
No 186
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.36 E-value=0.00017 Score=70.11 Aligned_cols=99 Identities=23% Similarity=0.297 Sum_probs=51.3
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCce
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKK 281 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 281 (949)
.-+.++|.+|+|||.||..+.+.... .-..+.|++++ +++..+ ..... ........+.+. + -
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~--~g~~v~f~~~~------~L~~~l----~~~~~-~~~~~~~~~~l~----~-~ 109 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIR--KGYSVLFITAS------DLLDEL----KQSRS-DGSYEELLKRLK----R-V 109 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEEHH------HHHHHH----HCCHC-CTTHCHHHHHHH----T-S
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhcc--CCcceeEeecC------ceeccc----ccccc-ccchhhhcCccc----c-c
Confidence 46899999999999999998875322 22345666543 333333 22211 112222333222 2 2
Q ss_pred EEEEEeCCCCCCcccHHH--HHHhhhcc-CCCcEEEEEccc
Q 043039 282 VLLVLDDVWTEDGNKWES--FQRCLINA-HRGSKILVTTRK 319 (949)
Q Consensus 282 ~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 319 (949)
=||||||+.......|.. +...+... .++ .+||||..
T Consensus 110 dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 110 DLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp SCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred cEecccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 378899997655444433 22222221 223 58888875
No 187
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.34 E-value=0.003 Score=75.19 Aligned_cols=156 Identities=17% Similarity=0.196 Sum_probs=85.0
Q ss_pred ccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccc-cc---cceEEEEEeCCCCCHHHHHH
Q 043039 175 EVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVS-NN---FNVMIWVCVSDPFDVFRVWK 250 (949)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~---f~~~~wv~~~~~~~~~~~~~ 250 (949)
.++||+.++.++...|.... ..-+.++|++|+|||++|+.+....... .. .+..+|.. ++..
T Consensus 187 ~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~--- 252 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGS--- 252 (758)
T ss_pred cCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHH---
Confidence 58999999999999997632 1234689999999999999987642111 01 13344321 1111
Q ss_pred HHHHhcCCCCCCCcchHHHHHHHHhhh-CCceEEEEEeCCCCC--------CcccHHHHHHhhhccCCCcEEEEEccchh
Q 043039 251 AIIENLDGYTPDLGELNTLHQLINNRI-GGKKVLLVLDDVWTE--------DGNKWESFQRCLINAHRGSKILVTTRKET 321 (949)
Q Consensus 251 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 321 (949)
++ .+. .-..+.+.....+.+.+ +.++.+|++|++..- ...+...+...+... ..-+||-+|...+
T Consensus 253 -ll---aG~-~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E 326 (758)
T PRK11034 253 -LL---AGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQE 326 (758)
T ss_pred -Hh---ccc-chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHH
Confidence 11 111 11112222222232222 345779999999531 111222222222221 1234555555444
Q ss_pred hHhhh-------cCcceEeCCCCChHhHHHHHHHHh
Q 043039 322 VARMI-------GSTCVISIEELSEPECWSLFKRFA 350 (949)
Q Consensus 322 v~~~~-------~~~~~~~l~~l~~~~~~~l~~~~~ 350 (949)
....+ .....+.+...+.+++.+++....
T Consensus 327 ~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 327 FSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 32111 123589999999999999998654
No 188
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.34 E-value=0.0034 Score=69.48 Aligned_cols=134 Identities=20% Similarity=0.171 Sum_probs=81.8
Q ss_pred hHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCC
Q 043039 181 EEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYT 260 (949)
Q Consensus 181 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 260 (949)
.-+.++.+.+.. ...++.|.|+-++||||+++.+.... ... .+++...+...-..-+.+
T Consensus 24 ~~~~~l~~~~~~-------~~~i~~i~GpR~~GKTtll~~l~~~~--~~~---~iy~~~~d~~~~~~~l~d--------- 82 (398)
T COG1373 24 KLLPRLIKKLDL-------RPFIILILGPRQVGKTTLLKLLIKGL--LEE---IIYINFDDLRLDRIELLD--------- 82 (398)
T ss_pred hhhHHHHhhccc-------CCcEEEEECCccccHHHHHHHHHhhC--Ccc---eEEEEecchhcchhhHHH---------
Confidence 445555555532 12299999999999999997776641 111 455443331111111111
Q ss_pred CCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccchhhHh-----hh-cCcceEeC
Q 043039 261 PDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKETVAR-----MI-GSTCVISI 334 (949)
Q Consensus 261 ~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~-----~~-~~~~~~~l 334 (949)
........-..++..|+||.|... ..|......+.+..+. +|++|+.+..... .. +....+++
T Consensus 83 --------~~~~~~~~~~~~~~yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l 151 (398)
T COG1373 83 --------LLRAYIELKEREKSYIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLEL 151 (398)
T ss_pred --------HHHHHHHhhccCCceEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEE
Confidence 111111111127889999999665 6798888888777666 8999988755432 21 33568899
Q ss_pred CCCChHhHHHHH
Q 043039 335 EELSEPECWSLF 346 (949)
Q Consensus 335 ~~l~~~~~~~l~ 346 (949)
.||+-.|...+-
T Consensus 152 ~PlSF~Efl~~~ 163 (398)
T COG1373 152 YPLSFREFLKLK 163 (398)
T ss_pred CCCCHHHHHhhc
Confidence 999999887654
No 189
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.33 E-value=0.0041 Score=76.24 Aligned_cols=136 Identities=19% Similarity=0.297 Sum_probs=80.0
Q ss_pred CccccchhHHHHHHHHHccCCCC---CCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAE---QPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWK 250 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 250 (949)
..++|.+..++.+.+.+.....+ ......++.++|+.|+|||++|+.+... ..+.-...+.++++...+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccch---
Confidence 45899999999999988753211 1123467889999999999999998874 211223344555554222111
Q ss_pred HHHHhcCCCCCCC---cchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccC-----------CCcEEEEE
Q 043039 251 AIIENLDGYTPDL---GELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAH-----------RGSKILVT 316 (949)
Q Consensus 251 ~i~~~l~~~~~~~---~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivT 316 (949)
...+-+..+.. .+...+...++. ....+|+||++....+..++.+...+..+. ..+-||+|
T Consensus 640 --~~~l~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~T 714 (852)
T TIGR03346 640 --VARLIGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMT 714 (852)
T ss_pred --HHHhcCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEe
Confidence 11121111111 112223333332 223499999998888778888887775431 23447777
Q ss_pred ccc
Q 043039 317 TRK 319 (949)
Q Consensus 317 tr~ 319 (949)
|..
T Consensus 715 Sn~ 717 (852)
T TIGR03346 715 SNL 717 (852)
T ss_pred CCc
Confidence 765
No 190
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.33 E-value=0.0032 Score=76.86 Aligned_cols=136 Identities=20% Similarity=0.280 Sum_probs=77.3
Q ss_pred CccccchhHHHHHHHHHccCCCC---CCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAE---QPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWK 250 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 250 (949)
..++|.+..++.+...+.....+ ......++.++|+.|+|||++|+.+.+.. .+.-...+.++++.-.. .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l--~~~~~~~i~id~se~~~-~---- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM--FDSDDAMVRIDMSEFME-K---- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh--hcCCCcEEEEEhHHhhh-h----
Confidence 45889999999998888643210 12233578899999999999999988642 11122344555543211 1
Q ss_pred HHHHhcCCCCCCC---cchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccC-----------CCcEEEEE
Q 043039 251 AIIENLDGYTPDL---GELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAH-----------RGSKILVT 316 (949)
Q Consensus 251 ~i~~~l~~~~~~~---~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivT 316 (949)
.....+-+..+.. .+...+...++. ...-+|+||++...+...+..+...+..+. ..+.||+|
T Consensus 641 ~~~~~LiG~~pgy~g~~~~g~l~~~v~~---~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~T 717 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEEGGYLTEAVRR---RPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMT 717 (857)
T ss_pred hhHHHHhCCCCcccccchhHHHHHHHHh---CCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEe
Confidence 1122222222211 111222222221 223599999998777777777777765431 22337778
Q ss_pred ccc
Q 043039 317 TRK 319 (949)
Q Consensus 317 tr~ 319 (949)
|..
T Consensus 718 SN~ 720 (857)
T PRK10865 718 SNL 720 (857)
T ss_pred CCc
Confidence 765
No 191
>PRK08181 transposase; Validated
Probab=97.33 E-value=0.0013 Score=68.20 Aligned_cols=100 Identities=19% Similarity=0.111 Sum_probs=55.5
Q ss_pred EEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceE
Q 043039 203 VISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKV 282 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 282 (949)
-+.++|++|+|||.||..+.+... .....++|+++ .+++..+..... ..........+. +.=
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~--~~g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~l~~l~-----~~d 169 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALI--ENGWRVLFTRT------TDLVQKLQVARR-----ELQLESAIAKLD-----KFD 169 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHH--HcCCceeeeeH------HHHHHHHHHHHh-----CCcHHHHHHHHh-----cCC
Confidence 589999999999999999987522 22334555553 344444433211 112222222222 234
Q ss_pred EEEEeCCCCCCcccHH--HHHHhhhccCCCcEEEEEccch
Q 043039 283 LLVLDDVWTEDGNKWE--SFQRCLINAHRGSKILVTTRKE 320 (949)
Q Consensus 283 LlVlDdv~~~~~~~~~--~l~~~l~~~~~gs~iivTtr~~ 320 (949)
|||+||+.......|. .+...+.....+..+||||...
T Consensus 170 LLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 170 LLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 9999999654333332 2444443322223589998853
No 192
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.28 E-value=7.3e-06 Score=90.93 Aligned_cols=126 Identities=18% Similarity=0.160 Sum_probs=91.0
Q ss_pred CCceEEEEEeccCCCCcccccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCcccccccccccc-ccCCCCCCeee
Q 043039 541 EKLRHSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNG-IEKLIHLRYLK 619 (949)
Q Consensus 541 ~~~r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~-i~~l~~L~~L~ 619 (949)
.++...++..|....+..++.-++.|+.|+|+.|.+.... .+..|++|+.|||+.|. +..+|.- ...+. |..|+
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~---L~~vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC---LRHVPQLSMVGCK-LQLLN 238 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch---hccccccchhhhh-heeee
Confidence 4455555565655544556666788899999999888776 57888899999999888 6666642 22333 88899
Q ss_pred ecccCCcccchhhcCCCCCcEEeecCCCCCCccc--cccccCCCCCeeeCCCcccc
Q 043039 620 LFFVGIEELPETFCELFNLQNLDLRRCSKFKRLP--QNIGKLVNLRHLIFDEDDLD 673 (949)
Q Consensus 620 L~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~l~ 673 (949)
+++|.++++ ..+.+|.+|+.||+++|- +.... .-++.|..|+.|++.+|.+-
T Consensus 239 lrnN~l~tL-~gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 239 LRNNALTTL-RGIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ecccHHHhh-hhHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 999988877 367788899999999876 33211 23677888888888888764
No 193
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.28 E-value=0.0011 Score=66.56 Aligned_cols=112 Identities=20% Similarity=0.269 Sum_probs=59.5
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHH----HHHHHHhhh
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNT----LHQLINNRI 277 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~----~~~~l~~~l 277 (949)
-.++|+|..|.||||++..+..+ ....|..+++++-.......+.+.. ..+... ......+. ....+.+..
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~~~n~~~~~~i~p--~~i~~~-~~~e~le~~l~~~k~~I~k~~ 88 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITPEYNNEYYKYIWP--DHIFKV-FDKEELEYILIRQKEKIEKYI 88 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEecCCchhhhhhcch--hhcccc-ccHHHHHHHHHHHHHHHHHHh
Confidence 36789999999999999998876 6668888877765433222221110 111110 01111111 112222222
Q ss_pred ----CCc---eEEEEEeCCCCCCcccHHHHHHhhhcc-CCCcEEEEEccc
Q 043039 278 ----GGK---KVLLVLDDVWTEDGNKWESFQRCLINA-HRGSKILVTTRK 319 (949)
Q Consensus 278 ----~~~---~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtr~ 319 (949)
.++ +.|||+||+-... ..-..+...+..+ +.+.-+|++++.
T Consensus 89 ~k~~~~k~~~~~LiIlDD~~~~~-~k~~~l~~~~~~gRH~~is~i~l~Q~ 137 (241)
T PF04665_consen 89 KKSPQKKNNPRFLIILDDLGDKK-LKSKILRQFFNNGRHYNISIIFLSQS 137 (241)
T ss_pred hhhcccCCCCCeEEEEeCCCCch-hhhHHHHHHHhcccccceEEEEEeee
Confidence 233 8999999995421 1112244444443 334557776665
No 194
>PRK12377 putative replication protein; Provisional
Probab=97.26 E-value=0.00044 Score=70.60 Aligned_cols=101 Identities=22% Similarity=0.153 Sum_probs=56.7
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCce
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKK 281 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 281 (949)
..+.++|.+|+|||+||.++.+... .....++++++. +++..+-..... ...... +.+.+ .+-
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~--~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~~----~l~~l-~~~ 164 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLL--AKGRSVIVVTVP------DVMSRLHESYDN----GQSGEK----FLQEL-CKV 164 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEEEHH------HHHHHHHHHHhc----cchHHH----HHHHh-cCC
Confidence 5789999999999999999998632 233345666654 344444333211 111111 22222 234
Q ss_pred EEEEEeCCCCCCcccHHH--HHHhhhcc-CCCcEEEEEccc
Q 043039 282 VLLVLDDVWTEDGNKWES--FQRCLINA-HRGSKILVTTRK 319 (949)
Q Consensus 282 ~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 319 (949)
=||||||+.......|.. +...+... .+.--+||||..
T Consensus 165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 599999996554444543 33333322 222347888774
No 195
>CHL00176 ftsH cell division protein; Validated
Probab=97.26 E-value=0.0045 Score=72.28 Aligned_cols=177 Identities=16% Similarity=0.208 Sum_probs=95.3
Q ss_pred CccccchhHHHHHHHH---HccCCC---CCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 043039 174 SEVCGRNEEKNALKGK---LLSETA---EQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFR 247 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~---L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 247 (949)
.++.|.++..+++.+. +..... -+....+-+.++|++|+|||++|+.+++... .. |+.++. .+
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~--~p-----~i~is~----s~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE--VP-----FFSISG----SE 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--CC-----eeeccH----HH
Confidence 4578887666555554 332211 0112245689999999999999999988521 12 222221 01
Q ss_pred HHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCC----------cccHHH-HHHhh---hc--cCCCc
Q 043039 248 VWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTED----------GNKWES-FQRCL---IN--AHRGS 311 (949)
Q Consensus 248 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~~~~~-l~~~l---~~--~~~gs 311 (949)
+ .....+ .....+...+.......+++|++|+++.-. ...+.. +...+ .. ...+.
T Consensus 252 f----~~~~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 F----VEMFVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred H----HHHhhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 1 111100 011223334445556788999999995321 112222 22222 11 23455
Q ss_pred EEEEEccchhhHh-hh----cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCC
Q 043039 312 KILVTTRKETVAR-MI----GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKG 375 (949)
Q Consensus 312 ~iivTtr~~~v~~-~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 375 (949)
.||.||....... .+ .-+..+.+...+.++-.++|+.++..... ........+++.+.|
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-----~~d~~l~~lA~~t~G 386 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-----SPDVSLELIARRTPG 386 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-----chhHHHHHHHhcCCC
Confidence 6777776644332 11 12467888889999999999888743111 112234567777776
No 196
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.25 E-value=0.00023 Score=83.58 Aligned_cols=128 Identities=24% Similarity=0.292 Sum_probs=89.1
Q ss_pred CCceEEEEEeccC--CCCcccc-cCCCCceEEEecCCCCC--CcchhhccCCceeEEEeCCccccccccccccccCCCCC
Q 043039 541 EKLRHSILVLHYN--ASFPVSI-FNAKKLRSLLIQGYSLQ--HMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHL 615 (949)
Q Consensus 541 ~~~r~l~l~~~~~--~~l~~~~-~~~~~Lr~L~l~~~~l~--~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L 615 (949)
.+++++.+.+... ..+|..+ .-+|.|++|.+.+-.+. .+...+.++++|+.||+++++ +..+ .+++.|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn---I~nl-~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN---ISNL-SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC---ccCc-HHHhccccH
Confidence 5566666655322 1222222 35799999999886654 234456789999999999998 6666 678999999
Q ss_pred CeeeecccCCcccc--hhhcCCCCCcEEeecCCCCCCccccc-------cccCCCCCeeeCCCcccc
Q 043039 616 RYLKLFFVGIEELP--ETFCELFNLQNLDLRRCSKFKRLPQN-------IGKLVNLRHLIFDEDDLD 673 (949)
Q Consensus 616 ~~L~L~~~~i~~lp--~~l~~L~~L~~L~L~~~~~l~~lp~~-------i~~L~~L~~L~l~~~~l~ 673 (949)
+.|.+++-.+..-+ ..+.+|++|++||+|...... -+.. -..|++||.||.+++.+.
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcchh
Confidence 99999887766432 567789999999999765332 2211 134889999998877665
No 197
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.25 E-value=0.012 Score=66.33 Aligned_cols=207 Identities=14% Similarity=0.116 Sum_probs=128.0
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCc------ccccccceEEEEEeCCCCCHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDA------DVSNNFNVMIWVCVSDPFDVFR 247 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~------~~~~~f~~~~wv~~~~~~~~~~ 247 (949)
..+-+||.+..+|.+++...-.. ...-+.+.|.|.+|+|||..+..|.+.. +.-..|+ .+.|+.-.-....+
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 44779999999999988654321 2344599999999999999999998742 1223443 44566666677999
Q ss_pred HHHHHHHhcCCCCCCCcchHHHHHHHHhhh-----CCceEEEEEeCCCCCCcccHHHHHHhhh-ccCCCcEEEEEcc-c-
Q 043039 248 VWKAIIENLDGYTPDLGELNTLHQLINNRI-----GGKKVLLVLDDVWTEDGNKWESFQRCLI-NAHRGSKILVTTR-K- 319 (949)
Q Consensus 248 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~-~~~~gs~iivTtr-~- 319 (949)
++..|..++.+.... .....+.+..+. +.+..++++|+++..-....+-+...|. +..++||++|-+= +
T Consensus 474 ~Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNT 550 (767)
T KOG1514|consen 474 IYEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANT 550 (767)
T ss_pred HHHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccc
Confidence 999999999875322 222333343333 2567899999985432122333444443 2457787766432 1
Q ss_pred -----h----hhHhhhcCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHHhhh
Q 043039 320 -----E----TVARMIGSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIGSLL 387 (949)
Q Consensus 320 -----~----~v~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 387 (949)
+ .++..++ -..+...+-+.++-.++...+..+.. .-.....+=++++|+.-.|..-.|+...-++.
T Consensus 551 mdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~-~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 551 MDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLD-AFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred ccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchh-hcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 1 1111111 23677788888888888877765432 23344555566677666666666666555444
No 198
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.23 E-value=0.0036 Score=75.59 Aligned_cols=122 Identities=14% Similarity=0.195 Sum_probs=71.9
Q ss_pred CccccchhHHHHHHHHHccCCCC---CCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAE---QPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWK 250 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 250 (949)
..++|.+..++.+.+.+.....+ ......++.++|+.|+|||+||+.+.... +...+.++++...+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~---- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKH---- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhcc----
Confidence 45788888888888887642210 11234578999999999999999998742 2344556655422211
Q ss_pred HHHHhcCCCCC--CCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhcc
Q 043039 251 AIIENLDGYTP--DLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINA 307 (949)
Q Consensus 251 ~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~ 307 (949)
.+...++.... ...+...+.+.+++ ...-+|+||+++...++.++.+...+..+
T Consensus 525 ~~~~lig~~~gyvg~~~~~~l~~~~~~---~p~~VvllDEieka~~~~~~~Ll~~ld~g 580 (731)
T TIGR02639 525 TVSRLIGAPPGYVGFEQGGLLTEAVRK---HPHCVLLLDEIEKAHPDIYNILLQVMDYA 580 (731)
T ss_pred cHHHHhcCCCCCcccchhhHHHHHHHh---CCCeEEEEechhhcCHHHHHHHHHhhccC
Confidence 11112222111 11122223333332 23459999999888777777777776543
No 199
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.21 E-value=0.013 Score=62.26 Aligned_cols=93 Identities=12% Similarity=0.079 Sum_probs=67.7
Q ss_pred CceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccc-hhhHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCC
Q 043039 279 GKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRK-ETVARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSR 356 (949)
Q Consensus 279 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 356 (949)
+.+=++|+|+++.......+.+...+..-.+++.+|++|.+ ..+...+ .....+.+.+++.+++.+.+.... .
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----I- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----C-
Confidence 44558999999888777888898888776677777776665 4454444 336689999999999999886531 1
Q ss_pred CCchhHHHHHHHHHHhcCCCchHHHHH
Q 043039 357 SDCKQLEEIGRKITWKCKGLPLAVKTI 383 (949)
Q Consensus 357 ~~~~~~~~~~~~i~~~~~g~Plal~~~ 383 (949)
. .+..+++.++|.|+....+
T Consensus 182 -~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 -T------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred -c------hHHHHHHHcCCCHHHHHHH
Confidence 1 1345678899999876554
No 200
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.21 E-value=0.017 Score=61.55 Aligned_cols=179 Identities=8% Similarity=0.025 Sum_probs=101.0
Q ss_pred HHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCc-----cc-ccccce--EEEEEeCCCCCHHHHHHHHHH
Q 043039 183 KNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDA-----DV-SNNFNV--MIWVCVSDPFDVFRVWKAIIE 254 (949)
Q Consensus 183 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~-----~~-~~~f~~--~~wv~~~~~~~~~~~~~~i~~ 254 (949)
-+.+...+... .-.+.+.+.|+.|+||+++|+.+.... .. ...-.| .-++..+..+|+..+.-
T Consensus 11 ~~~l~~~~~~~-----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p---- 81 (325)
T PRK06871 11 YQQITQAFQQG-----LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEP---- 81 (325)
T ss_pred HHHHHHHHHcC-----CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcc----
Confidence 44556665432 235678899999999999998875421 10 000000 00011111111110000
Q ss_pred hcCCCCCCCcchHHHHHHHHhh-hCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccch-hhHhhh-cCcce
Q 043039 255 NLDGYTPDLGELNTLHQLINNR-IGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKE-TVARMI-GSTCV 331 (949)
Q Consensus 255 ~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~ 331 (949)
..+..-..++..++.+.+... ..+++=++|+|+++.......+.+...+..-..++.+|++|.+. .+...+ .....
T Consensus 82 -~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~ 160 (325)
T PRK06871 82 -IDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQT 160 (325)
T ss_pred -ccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceE
Confidence 000001112222222222221 23556688999998887778888888887777777888777764 444343 33568
Q ss_pred EeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHH
Q 043039 332 ISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAV 380 (949)
Q Consensus 332 ~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 380 (949)
+.+.+++.+++.+.+..... .. ...+...+..++|.|...
T Consensus 161 ~~~~~~~~~~~~~~L~~~~~-----~~----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQSS-----AE----ISEILTALRINYGRPLLA 200 (325)
T ss_pred EeCCCCCHHHHHHHHHHHhc-----cC----hHHHHHHHHHcCCCHHHH
Confidence 99999999999998887541 11 112455677899999633
No 201
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.20 E-value=0.0012 Score=64.78 Aligned_cols=132 Identities=23% Similarity=0.245 Sum_probs=64.6
Q ss_pred cchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCC--C-------CHH--
Q 043039 178 GRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDP--F-------DVF-- 246 (949)
Q Consensus 178 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~-------~~~-- 246 (949)
.+..+-....+.|.. ..++.+.|++|.|||.||.+..-+.-..+.|+.++++.-.-+ . +..
T Consensus 4 p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 455666667777762 238999999999999999777655434578888777642211 0 000
Q ss_pred --HHHHHHHHhcCCCCCCCcchHHHHHHH------HhhhCCc---eEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEE
Q 043039 247 --RVWKAIIENLDGYTPDLGELNTLHQLI------NNRIGGK---KVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILV 315 (949)
Q Consensus 247 --~~~~~i~~~l~~~~~~~~~~~~~~~~l------~~~l~~~---~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv 315 (949)
-.+..+...+..-. .....+.+.+.- ..+++|+ ..+||+|++.+... .++...+...+.|||||+
T Consensus 76 ~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~---~~~k~ilTR~g~~skii~ 151 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTP---EELKMILTRIGEGSKIII 151 (205)
T ss_dssp --TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--H---HHHHHHHTTB-TT-EEEE
T ss_pred HHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCH---HHHHHHHcccCCCcEEEE
Confidence 01111222222111 111222222210 1445554 45999999976543 345555666788999999
Q ss_pred Eccchh
Q 043039 316 TTRKET 321 (949)
Q Consensus 316 Ttr~~~ 321 (949)
+--..+
T Consensus 152 ~GD~~Q 157 (205)
T PF02562_consen 152 TGDPSQ 157 (205)
T ss_dssp EE----
T ss_pred ecCcee
Confidence 976543
No 202
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.20 E-value=0.00082 Score=74.97 Aligned_cols=189 Identities=15% Similarity=0.191 Sum_probs=112.1
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAII 253 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 253 (949)
++++|-+.....|...+.... -.+--...|+-|+||||+|+-+....--.. | ....++..-..-+.|.
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhh
Confidence 357999999999999997543 234566789999999999987764310000 0 0001111111111111
Q ss_pred Hh--------cCCCCCCCcchHHHHHHHHhhh-CCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccc-hhhH
Q 043039 254 EN--------LDGYTPDLGELNTLHQLINNRI-GGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRK-ETVA 323 (949)
Q Consensus 254 ~~--------l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 323 (949)
.- -..+....++.+++.+.+.-.- +++.=+.|+|.|.-.....|+.+...+..-....+.|+.|.+ ..+.
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 11 0011112233333333333221 344458999999877777888888887666666666666665 4444
Q ss_pred hh-hcCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCch
Q 043039 324 RM-IGSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPL 378 (949)
Q Consensus 324 ~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 378 (949)
.. ....+.+.++.++.++....+...+...+...+ .+....|++..+|...
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e----~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE----EDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCCccC----HHHHHHHHHHcCCChh
Confidence 33 344678999999999999988888754443333 4445556666777543
No 203
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.15 E-value=0.0021 Score=68.23 Aligned_cols=122 Identities=15% Similarity=0.152 Sum_probs=71.0
Q ss_pred cchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcC
Q 043039 178 GRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLD 257 (949)
Q Consensus 178 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 257 (949)
+|........+++..-.. ....+-+.++|..|+|||.||.++++... ..-..+.++++. .++..+.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~~v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGVSSTLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEEEHH------HHHHHHHHHHh
Confidence 455556666666653321 11345789999999999999999998732 222335566553 44455544432
Q ss_pred CCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHH--HHHhh-hcc-CCCcEEEEEccc
Q 043039 258 GYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWES--FQRCL-INA-HRGSKILVTTRK 319 (949)
Q Consensus 258 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~iivTtr~ 319 (949)
.. .... .+.. +. +-=||||||+..+....|.. +...+ ... ..+-.+|+||.-
T Consensus 205 ~~-----~~~~---~l~~-l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 DG-----SVKE---KIDA-VK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred cC-----cHHH---HHHH-hc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 11 1222 2222 22 24489999997766667754 44433 322 245568888874
No 204
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.12 E-value=0.005 Score=60.57 Aligned_cols=158 Identities=18% Similarity=0.200 Sum_probs=93.1
Q ss_pred CccccchhHHH---HHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHH
Q 043039 174 SEVCGRNEEKN---ALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWK 250 (949)
Q Consensus 174 ~~~~Gr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 250 (949)
++++|.++... -|++.|..+..-+.-.++-|..+|++|.|||.+|+++.+..++ .| +.+.. ..
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv--p~-----l~vka-------t~ 186 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--PL-----LLVKA-------TE 186 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC--ce-----EEech-------HH
Confidence 46899887654 4566676555444567789999999999999999999997332 22 11111 11
Q ss_pred HHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCC--------CcccHHHHHHhhh------ccCCCcEEEEE
Q 043039 251 AIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTE--------DGNKWESFQRCLI------NAHRGSKILVT 316 (949)
Q Consensus 251 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--------~~~~~~~l~~~l~------~~~~gs~iivT 316 (949)
-|.+.++. ....+.+...+.-+--++++.+|.++-. -..+..++..+|. ..+.|...|-.
T Consensus 187 liGehVGd------gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaa 260 (368)
T COG1223 187 LIGEHVGD------GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAA 260 (368)
T ss_pred HHHHHhhh------HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEee
Confidence 11122211 1122223333333457899999998431 1122333333332 13457666777
Q ss_pred ccchhhHhhh-cC--cceEeCCCCChHhHHHHHHHHhh
Q 043039 317 TRKETVARMI-GS--TCVISIEELSEPECWSLFKRFAF 351 (949)
Q Consensus 317 tr~~~v~~~~-~~--~~~~~l~~l~~~~~~~l~~~~~~ 351 (949)
|...+..... .+ ...++..--+++|-.+++..++-
T Consensus 261 TN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k 298 (368)
T COG1223 261 TNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAK 298 (368)
T ss_pred cCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHH
Confidence 7766655322 11 34677777788999999998874
No 205
>PRK08118 topology modulation protein; Reviewed
Probab=97.11 E-value=0.00023 Score=68.49 Aligned_cols=34 Identities=32% Similarity=0.684 Sum_probs=27.3
Q ss_pred EEEEEecCCChHHHHHHHHHcCcccc-cccceEEE
Q 043039 203 VISLVGMGGIGKTTLAQLAYNDADVS-NNFNVMIW 236 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~w 236 (949)
.|.|+|++|+||||||+.+++..... -+|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58899999999999999999864443 45677776
No 206
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.11 E-value=0.0032 Score=64.21 Aligned_cols=118 Identities=14% Similarity=0.170 Sum_probs=63.9
Q ss_pred HHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCC
Q 043039 182 EKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTP 261 (949)
Q Consensus 182 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 261 (949)
.+..+.++..... .+...+.++|.+|+|||+||..+.+.... .-..++++++ .+++..+-.....
T Consensus 84 al~~a~~~~~~~~----~~~~~~~l~G~~GtGKThLa~aia~~l~~--~g~~v~~it~------~~l~~~l~~~~~~--- 148 (244)
T PRK07952 84 ALSKARQYVEEFD----GNIASFIFSGKPGTGKNHLAAAICNELLL--RGKSVLIITV------ADIMSAMKDTFSN--- 148 (244)
T ss_pred HHHHHHHHHHhhc----cCCceEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEEH------HHHHHHHHHHHhh---
Confidence 4555555553221 12347899999999999999999886322 2335566643 3444444333221
Q ss_pred CCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHH--HHHhhhcc-CCCcEEEEEccc
Q 043039 262 DLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWES--FQRCLINA-HRGSKILVTTRK 319 (949)
Q Consensus 262 ~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 319 (949)
.....+. +.+.+.. .=+||+||+......+|.. +...+... .+.-.+||||..
T Consensus 149 ~~~~~~~----~l~~l~~-~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 149 SETSEEQ----LLNDLSN-VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred ccccHHH----HHHHhcc-CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 1111122 2233442 3388889997765556664 33333222 123348888774
No 207
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.08 E-value=0.00036 Score=68.82 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=31.1
Q ss_pred hhhcCCCCCcEEeecCCCCCCccccc----cccCCCCCeeeCCCccccc
Q 043039 630 ETFCELFNLQNLDLRRCSKFKRLPQN----IGKLVNLRHLIFDEDDLDY 674 (949)
Q Consensus 630 ~~l~~L~~L~~L~L~~~~~l~~lp~~----i~~L~~L~~L~l~~~~l~~ 674 (949)
+.+-++++||..+|++|.+-...|.. |.+-+.|.||.+++|.+..
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp 134 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGP 134 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCc
Confidence 44557788888888887765555543 4566788888887776543
No 208
>PRK04132 replication factor C small subunit; Provisional
Probab=97.07 E-value=0.014 Score=69.75 Aligned_cols=153 Identities=12% Similarity=0.076 Sum_probs=98.1
Q ss_pred cCCChHHHHHHHHHcCccccccc-ceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEe
Q 043039 209 MGGIGKTTLAQLAYNDADVSNNF-NVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLD 287 (949)
Q Consensus 209 ~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlD 287 (949)
|.++||||+|..++++.- ...+ ..++-+++++...+.. .++++.......+- -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l~-g~~~~~~~lElNASd~rgid~-IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALARELF-GENWRHNFLELNASDERGINV-IREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhhh-cccccCeEEEEeCCCcccHHH-HHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 778999999999998621 1122 2467778887555543 33333322111000 01245799999
Q ss_pred CCCCCCcccHHHHHHhhhccCCCcEEEEEccch-hhHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHH
Q 043039 288 DVWTEDGNKWESFQRCLINAHRGSKILVTTRKE-TVARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEI 365 (949)
Q Consensus 288 dv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 365 (949)
+++.......+.+...+......+++|++|.+. .+...+ .....+.+.+++.++....+...+...+... ..+.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i----~~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL----TEEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC----CHHH
Confidence 999887778888888887655667777776653 333333 2356899999999999888877654322111 1446
Q ss_pred HHHHHHhcCCCchHHH
Q 043039 366 GRKITWKCKGLPLAVK 381 (949)
Q Consensus 366 ~~~i~~~~~g~Plal~ 381 (949)
...|++.++|-+....
T Consensus 714 L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 714 LQAILYIAEGDMRRAI 729 (846)
T ss_pred HHHHHHHcCCCHHHHH
Confidence 7788999999885443
No 209
>PRK06921 hypothetical protein; Provisional
Probab=97.04 E-value=0.0025 Score=66.38 Aligned_cols=100 Identities=21% Similarity=0.324 Sum_probs=55.1
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCc
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGK 280 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 280 (949)
...+.++|..|+|||+||.++.+....+ ....++|++.. +++..+.... +...+.+ +.+. +
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~-~g~~v~y~~~~------~l~~~l~~~~----------~~~~~~~-~~~~-~ 177 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRK-KGVPVLYFPFV------EGFGDLKDDF----------DLLEAKL-NRMK-K 177 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhh-cCceEEEEEHH------HHHHHHHHHH----------HHHHHHH-HHhc-C
Confidence 4578999999999999999998863221 13456676642 2333332221 1111122 2222 2
Q ss_pred eEEEEEeCCC-----CCCcccHHH--HHHhhhcc-CCCcEEEEEccc
Q 043039 281 KVLLVLDDVW-----TEDGNKWES--FQRCLINA-HRGSKILVTTRK 319 (949)
Q Consensus 281 ~~LlVlDdv~-----~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 319 (949)
-=||||||+. .+....|.. +...+... ..+..+||||..
T Consensus 178 ~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 178 VEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3499999993 232334543 44433322 234558888874
No 210
>PRK06526 transposase; Provisional
Probab=97.02 E-value=0.0015 Score=67.21 Aligned_cols=100 Identities=21% Similarity=0.204 Sum_probs=52.7
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCce
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKK 281 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 281 (949)
.-+.++|++|+|||+||..+....... .+ .+.|+ +..+++..+..... .... ...+... .+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~-g~-~v~f~------t~~~l~~~l~~~~~-----~~~~---~~~l~~l--~~~ 160 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQA-GH-RVLFA------TAAQWVARLAAAHH-----AGRL---QAELVKL--GRY 160 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHC-CC-chhhh------hHHHHHHHHHHHHh-----cCcH---HHHHHHh--ccC
Confidence 358999999999999999987653222 22 23333 23344444433211 1111 1222222 234
Q ss_pred EEEEEeCCCCCCcccHH--HHHHhhhcc-CCCcEEEEEccch
Q 043039 282 VLLVLDDVWTEDGNKWE--SFQRCLINA-HRGSKILVTTRKE 320 (949)
Q Consensus 282 ~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtr~~ 320 (949)
-+||+||+.......+. .+...+... .+++ +|+||...
T Consensus 161 dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 161 PLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 58999999654322222 233333322 2344 88888753
No 211
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.01 E-value=0.00079 Score=66.48 Aligned_cols=91 Identities=14% Similarity=0.174 Sum_probs=65.1
Q ss_pred cccCCCCceEEEecCCCCC-----CcchhhccCCceeEEEeCCccccc-cccc-------cccccCCCCCCeeeecccCC
Q 043039 559 SIFNAKKLRSLLIQGYSLQ-----HMPSFFDQLTCLRALRIGKYGDDA-IERI-------PNGIEKLIHLRYLKLFFVGI 625 (949)
Q Consensus 559 ~~~~~~~Lr~L~l~~~~l~-----~l~~~~~~l~~Lr~L~L~~~~~~~-~~~l-------p~~i~~l~~L~~L~L~~~~i 625 (949)
.+.-+..+..++|+||.+. .+...+.+-.+|++.+++.-.... ...+ ...+-+|++|+..+||.|.+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 3344778889999999876 245556677889999887653111 1122 33467899999999999987
Q ss_pred c-ccch----hhcCCCCCcEEeecCCCCCC
Q 043039 626 E-ELPE----TFCELFNLQNLDLRRCSKFK 650 (949)
Q Consensus 626 ~-~lp~----~l~~L~~L~~L~L~~~~~l~ 650 (949)
. ..|+ -|+.-+.|.+|.+++|. +.
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnG-lG 133 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNG-LG 133 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCC-CC
Confidence 6 4444 45677899999999987 44
No 212
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.01 E-value=0.0035 Score=69.19 Aligned_cols=152 Identities=16% Similarity=0.226 Sum_probs=83.5
Q ss_pred ccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHH-H
Q 043039 175 EVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAI-I 253 (949)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i-~ 253 (949)
.++||++.++.+...+.... -|.|.|++|+|||++|+.+.......+.|.... +..+. ..+++..+ +
T Consensus 21 ~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~-~~ftt---p~DLfG~l~i 88 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFAFQNARAFEYLM-TRFST---PEEVFGPLSI 88 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHHhcccCcceeee-eeecC---cHHhcCcHHH
Confidence 48999999999999887643 578999999999999999987432222333211 11111 11221111 1
Q ss_pred HhcCCCCCCCcchHHHHHHHHhhhCC---ceEEEEEeCCCCCCcccHHHHHHhhhccC--C-------CcEEEEEccchh
Q 043039 254 ENLDGYTPDLGELNTLHQLINNRIGG---KKVLLVLDDVWTEDGNKWESFQRCLINAH--R-------GSKILVTTRKET 321 (949)
Q Consensus 254 ~~l~~~~~~~~~~~~~~~~l~~~l~~---~~~LlVlDdv~~~~~~~~~~l~~~l~~~~--~-------gs~iivTtr~~~ 321 (949)
..... .. ...+...+ .--++++|+++.........+...+.... . ..++++++.++-
T Consensus 89 ~~~~~----~g-------~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~L 157 (498)
T PRK13531 89 QALKD----EG-------RYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNEL 157 (498)
T ss_pred hhhhh----cC-------chhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCC
Confidence 11100 00 01111111 11289999999877666777777663221 1 235656555522
Q ss_pred hH------hhhcC-cceEeCCCCChHhH-HHHHHHH
Q 043039 322 VA------RMIGS-TCVISIEELSEPEC-WSLFKRF 349 (949)
Q Consensus 322 v~------~~~~~-~~~~~l~~l~~~~~-~~l~~~~ 349 (949)
.. ..+.. .-.+.+++++.++. .+++...
T Consensus 158 PE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 158 PEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred cccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 21 11111 23678889975444 7777654
No 213
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.98 E-value=0.014 Score=67.26 Aligned_cols=185 Identities=15% Similarity=0.176 Sum_probs=95.0
Q ss_pred cCccccchhHHHHHHHHHc---cCCC---CCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHH
Q 043039 173 VSEVCGRNEEKNALKGKLL---SETA---EQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVF 246 (949)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 246 (949)
-.+++|-++..+++.+++. .... .+....+-+.++|++|+|||++|+.+.+... ..| +.++. .
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~--~~~-----~~i~~----~ 122 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG--VPF-----FSISG----S 122 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC--CCe-----eeccH----H
Confidence 3468898877666655443 1110 0112234588999999999999999988522 122 22221 1
Q ss_pred HHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCC----------cccHHHHHH----hhh--ccCCC
Q 043039 247 RVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTED----------GNKWESFQR----CLI--NAHRG 310 (949)
Q Consensus 247 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~~~~~l~~----~l~--~~~~g 310 (949)
++ .....+. ....+...+.......+.+|+||+++.-. ...+..... .+. ....+
T Consensus 123 ~~----~~~~~g~-----~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 123 DF----VEMFVGV-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred HH----HHHHhcc-----cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 11 1111110 11223333444445678899999995410 011222221 111 12234
Q ss_pred cEEEEEccchhhHh-hh----cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCC-chHHHH
Q 043039 311 SKILVTTRKETVAR-MI----GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGL-PLAVKT 382 (949)
Q Consensus 311 s~iivTtr~~~v~~-~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~ 382 (949)
..||.||....... .+ .-+..+.+...+.++-.++|..+...... ....+ ...+++.+.|. +-.+..
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~~~----l~~la~~t~G~sgadl~~ 266 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APDVD----LKAVARRTPGFSGADLAN 266 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccchh----HHHHHHhCCCCCHHHHHH
Confidence 45666666543221 11 12467889999999999999887643211 11112 34666677663 333433
No 214
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.98 E-value=0.00035 Score=82.14 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=16.6
Q ss_pred ccCCCCCeeeCCCcccccCCcCCCCCCCCcccC
Q 043039 657 GKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLS 689 (949)
Q Consensus 657 ~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~ 689 (949)
.++++|..||+++++++.+ .||++|++|++|.
T Consensus 170 ~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISNL-SGISRLKNLQVLS 201 (699)
T ss_pred hccCccceeecCCCCccCc-HHHhccccHHHHh
Confidence 3445555555555555444 4555555555554
No 215
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.97 E-value=0.0095 Score=61.21 Aligned_cols=172 Identities=17% Similarity=0.219 Sum_probs=95.4
Q ss_pred ccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCH-HHHHHHHH
Q 043039 175 EVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDV-FRVWKAII 253 (949)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~i~ 253 (949)
.++|-.++...+..++..... .++..-+.|+|+.|.|||+|...+..+ .+..-+..+-|........ +-.++.|.
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~--~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSD--IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhh--HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 488988888888888864432 123446789999999999999877765 2222234444555544333 22344444
Q ss_pred Hhc----CCCCCCCcchHHHHHHHHhhhC------CceEEEEEeCCCCCCcccHHH-HHHhhh----ccCCCcEEEEEcc
Q 043039 254 ENL----DGYTPDLGELNTLHQLINNRIG------GKKVLLVLDDVWTEDGNKWES-FQRCLI----NAHRGSKILVTTR 318 (949)
Q Consensus 254 ~~l----~~~~~~~~~~~~~~~~l~~~l~------~~~~LlVlDdv~~~~~~~~~~-l~~~l~----~~~~gs~iivTtr 318 (949)
+|+ ...........+....+-..|+ +-++++|+|.++-..+..-.. +...|. ...|-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 444 3322222222333333333332 346899998885432222122 222221 2345667788998
Q ss_pred chh-------hHhhhcCcceEeCCCCChHhHHHHHHHHh
Q 043039 319 KET-------VARMIGSTCVISIEELSEPECWSLFKRFA 350 (949)
Q Consensus 319 ~~~-------v~~~~~~~~~~~l~~l~~~~~~~l~~~~~ 350 (949)
-.. |-....-..++-++.+.-++...++++..
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 632 22322223355556677778777777655
No 216
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.97 E-value=0.00072 Score=71.80 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=42.6
Q ss_pred ccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 175 EVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
+++|.++.++++++++.....+.....+++.++|++|+||||||+.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 69999999999999997655433445689999999999999999998775
No 217
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.97 E-value=0.0075 Score=64.59 Aligned_cols=114 Identities=11% Similarity=0.100 Sum_probs=60.7
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCC-CHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPF-DVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIG 278 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 278 (949)
+.++|+++|++|+||||++..+..... ..-..+..++..... ...+-+...++.++.+.....+...+.+.+...-.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~--~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH--GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH--HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 457999999999999999988876422 222235555554321 23333444444444332223344555555544322
Q ss_pred C-ceEEEEEeCCCCCC--cccHHHHHHhhhccCCCcEEEE
Q 043039 279 G-KKVLLVLDDVWTED--GNKWESFQRCLINAHRGSKILV 315 (949)
Q Consensus 279 ~-~~~LlVlDdv~~~~--~~~~~~l~~~l~~~~~gs~iiv 315 (949)
. +.=+|++|-..... .....++...+....+...++|
T Consensus 318 ~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLV 357 (436)
T PRK11889 318 EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLT 357 (436)
T ss_pred ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEE
Confidence 1 23478889885432 2234555555543333333444
No 218
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.96 E-value=0.0049 Score=67.29 Aligned_cols=146 Identities=16% Similarity=0.154 Sum_probs=89.3
Q ss_pred ccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCccccc-------------------ccceEE
Q 043039 175 EVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSN-------------------NFNVMI 235 (949)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 235 (949)
.++|-+....++..+..... ...+.+.++|++|+||||+|..+.+...-.. ....+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 36777888888888887443 2344689999999999999988876411000 123445
Q ss_pred EEEeCCCCC---HHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcE
Q 043039 236 WVCVSDPFD---VFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSK 312 (949)
Q Consensus 236 wv~~~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 312 (949)
.+..++... ..+..+++.+....... .++.-++|+|+++....+.-..+...+......++
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 555554443 23333333333222111 35567999999987766666777777766677788
Q ss_pred EEEEccc-hhhHhhhc-CcceEeCCCCChH
Q 043039 313 ILVTTRK-ETVARMIG-STCVISIEELSEP 340 (949)
Q Consensus 313 iivTtr~-~~v~~~~~-~~~~~~l~~l~~~ 340 (949)
+|++|.. ..+...+. ....+++.+.+..
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~~~~~ 171 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKPPSRL 171 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCCchHH
Confidence 8888874 33333332 2456777663333
No 219
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.96 E-value=0.031 Score=60.21 Aligned_cols=94 Identities=11% Similarity=0.054 Sum_probs=67.4
Q ss_pred CceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccc-hhhHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCC
Q 043039 279 GKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRK-ETVARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSR 356 (949)
Q Consensus 279 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 356 (949)
+++=++|+|+++.......+.+...+..-..++.+|++|.+ ..+..++ .....+.+.+++.+++.+.+.....
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~----- 181 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREVT----- 181 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHccC-----
Confidence 56669999999888777888888888776677777777776 4444443 3356889999999999888865321
Q ss_pred CCchhHHHHHHHHHHhcCCCchHHH
Q 043039 357 SDCKQLEEIGRKITWKCKGLPLAVK 381 (949)
Q Consensus 357 ~~~~~~~~~~~~i~~~~~g~Plal~ 381 (949)
.+ .+.+..++..++|.|....
T Consensus 182 ~~----~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 182 MS----QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred CC----HHHHHHHHHHcCCCHHHHH
Confidence 11 2235677889999996443
No 220
>PRK04296 thymidine kinase; Provisional
Probab=96.94 E-value=0.0024 Score=63.00 Aligned_cols=113 Identities=12% Similarity=0.047 Sum_probs=61.4
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCC--CcchHHHHHHHHhhhCC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPD--LGELNTLHQLINNRIGG 279 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 279 (949)
.++.|+|..|.||||+|..+.... ..+...++.+. ..++.......++++++..... ......+.+.+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~--~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY--EERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH--HHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 478899999999999998776642 22233334332 1112222233445555432221 1233444444444 234
Q ss_pred ceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccchh
Q 043039 280 KKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKET 321 (949)
Q Consensus 280 ~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 321 (949)
+.-+||+|.+.--+.++..++...+ ...|..||+|.++..
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 4459999999543222222333332 345778999988744
No 221
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.94 E-value=0.021 Score=61.35 Aligned_cols=93 Identities=13% Similarity=0.153 Sum_probs=65.8
Q ss_pred CceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccc-hhhHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCC
Q 043039 279 GKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRK-ETVARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSR 356 (949)
Q Consensus 279 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 356 (949)
+++=++|+|+++......++.+...+..-.+++.+|++|.+ ..+...+ .....+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 44558999999988888899999988777777776666665 4444443 335789999999999999887642 1
Q ss_pred CCchhHHHHHHHHHHhcCCCchHHHHH
Q 043039 357 SDCKQLEEIGRKITWKCKGLPLAVKTI 383 (949)
Q Consensus 357 ~~~~~~~~~~~~i~~~~~g~Plal~~~ 383 (949)
.. ...++..++|.|.....+
T Consensus 206 ~~-------~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 AD-------ADALLAEAGGAPLAALAL 225 (342)
T ss_pred Ch-------HHHHHHHcCCCHHHHHHH
Confidence 11 123466789999755443
No 222
>PRK09183 transposase/IS protein; Provisional
Probab=96.89 E-value=0.0041 Score=64.59 Aligned_cols=100 Identities=19% Similarity=0.232 Sum_probs=52.4
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCce
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKK 281 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 281 (949)
..+.|+|++|+|||+||..+....... . ..+.++++ .++...+...... .. +...+.+.+ .+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~-G-~~v~~~~~------~~l~~~l~~a~~~-----~~---~~~~~~~~~-~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRA-G-IKVRFTTA------ADLLLQLSTAQRQ-----GR---YKTTLQRGV-MAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHc-C-CeEEEEeH------HHHHHHHHHHHHC-----Cc---HHHHHHHHh-cCC
Confidence 367799999999999999987642222 2 23344432 2333333222111 11 112222222 344
Q ss_pred EEEEEeCCCCCCcccHH--HHHHhhhcc-CCCcEEEEEccc
Q 043039 282 VLLVLDDVWTEDGNKWE--SFQRCLINA-HRGSKILVTTRK 319 (949)
Q Consensus 282 ~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtr~ 319 (949)
-++|+||+.......+. .+...+... ..++ +||||..
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 59999999754333332 243333322 2344 8888875
No 223
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.86 E-value=0.0054 Score=58.83 Aligned_cols=131 Identities=18% Similarity=0.205 Sum_probs=70.6
Q ss_pred cccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHh
Q 043039 176 VCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIEN 255 (949)
Q Consensus 176 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 255 (949)
++|....+.++.+.+..... .. .-|.|+|..|+||+.+|+.+++.... .-...+-|+++. .+...+-.++.-.
T Consensus 1 liG~s~~m~~~~~~~~~~a~---~~-~pVlI~GE~GtGK~~lA~~IH~~s~r--~~~pfi~vnc~~-~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS---SD-LPVLITGETGTGKELLARAIHNNSPR--KNGPFISVNCAA-LPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT---ST-S-EEEECSTTSSHHHHHHHHHHCSTT--TTS-EEEEETTT-S-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhC---CC-CCEEEEcCCCCcHHHHHHHHHHhhhc--ccCCeEEEehhh-hhcchhhhhhhcc
Confidence 47888888888887765432 12 34669999999999999999985221 122334455553 2333333333322
Q ss_pred cCCCCCCC-cchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccC-----------CCcEEEEEccc
Q 043039 256 LDGYTPDL-GELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAH-----------RGSKILVTTRK 319 (949)
Q Consensus 256 l~~~~~~~-~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 319 (949)
-.....+. .... -.+...-.+ -|+||++..........+...+..+. ...|||.||..
T Consensus 74 ~~~~~~~~~~~~~---G~l~~A~~G---tL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 74 EKGAFTGARSDKK---GLLEQANGG---TLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp CSSSSTTTSSEBE---HHHHHTTTS---EEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred ccccccccccccC---Cceeeccce---EEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 22111111 1111 122222122 68899998877666667777775321 25688888875
No 224
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.84 E-value=0.0085 Score=71.41 Aligned_cols=120 Identities=16% Similarity=0.230 Sum_probs=69.6
Q ss_pred CccccchhHHHHHHHHHccCCCC---CCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAE---QPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWK 250 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 250 (949)
..++|-++.++.+.+.+.....+ .......+.++|++|+|||++|+.+.... . ...+.++++......
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~---~~~i~id~se~~~~~---- 528 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERH---- 528 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--C---CCcEEeechhhcccc----
Confidence 35789999999998887632110 12234578999999999999999987752 1 233445554322211
Q ss_pred HHHHhcCCCCCCC---cchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhc
Q 043039 251 AIIENLDGYTPDL---GELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLIN 306 (949)
Q Consensus 251 ~i~~~l~~~~~~~---~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~ 306 (949)
.+ ..+-+..+.. .....+...+++ ...-+|+||+++....+.++.+...+..
T Consensus 529 ~~-~~LiG~~~gyvg~~~~g~L~~~v~~---~p~sVlllDEieka~~~v~~~LLq~ld~ 583 (758)
T PRK11034 529 TV-SRLIGAPPGYVGFDQGGLLTDAVIK---HPHAVLLLDEIEKAHPDVFNLLLQVMDN 583 (758)
T ss_pred cH-HHHcCCCCCcccccccchHHHHHHh---CCCcEEEeccHhhhhHHHHHHHHHHHhc
Confidence 11 2222211111 111122222222 2346999999988777777777776654
No 225
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.81 E-value=0.072 Score=58.03 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCc
Q 043039 180 NEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDA 225 (949)
Q Consensus 180 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 225 (949)
+.-.+.|.+.+.... .....+|+|.|.=|+|||++.+.+.+..
T Consensus 2 ~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 445566777776542 2467899999999999999999987763
No 226
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.81 E-value=0.0054 Score=75.02 Aligned_cols=136 Identities=15% Similarity=0.221 Sum_probs=77.3
Q ss_pred CccccchhHHHHHHHHHccCCC---CCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETA---EQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWK 250 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 250 (949)
..++|-+..++.+.+.+..... ........+.++|+.|+|||+||+.+... .-+.-...+-++.+.-.+...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~--- 583 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHT--- 583 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhcccccc---
Confidence 5689999999999888753221 11223456778999999999999888763 111112334444443222111
Q ss_pred HHHHhcCCCC--CCCcchHHHHHHHHhhhCCce-EEEEEeCCCCCCcccHHHHHHhhhccC-----------CCcEEEEE
Q 043039 251 AIIENLDGYT--PDLGELNTLHQLINNRIGGKK-VLLVLDDVWTEDGNKWESFQRCLINAH-----------RGSKILVT 316 (949)
Q Consensus 251 ~i~~~l~~~~--~~~~~~~~~~~~l~~~l~~~~-~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivT 316 (949)
+..-++.+. ....+...+. +.++.++ -+|+||+++..+++.++.+...+..+. ..+-||+|
T Consensus 584 -~~~l~g~~~gyvg~~~~~~l~----~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 584 -VSKLIGSPPGYVGYNEGGQLT----EAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred -HHHhcCCCCcccCcCccchHH----HHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 111122211 0111222233 3334344 599999998887777777777765431 34556666
Q ss_pred ccc
Q 043039 317 TRK 319 (949)
Q Consensus 317 tr~ 319 (949)
|..
T Consensus 659 sn~ 661 (821)
T CHL00095 659 SNL 661 (821)
T ss_pred CCc
Confidence 654
No 227
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.80 E-value=0.011 Score=59.06 Aligned_cols=206 Identities=13% Similarity=0.151 Sum_probs=117.4
Q ss_pred cccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHH----HcCcccccccceEEEEEeCCC---------
Q 043039 176 VCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLA----YNDADVSNNFNVMIWVCVSDP--------- 242 (949)
Q Consensus 176 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v----~~~~~~~~~f~~~~wv~~~~~--------- 242 (949)
+.++++.-+.+..... +++.+-+.++|+.|.||-|.+..+ |.-.-.+-.-+...|.+.+..
T Consensus 15 l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 6667776777766554 235677889999999999887554 442111223344555554332
Q ss_pred -CC-----------HHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceE-EEEEeCCCCCCcccHHHHHHhhhccCC
Q 043039 243 -FD-----------VFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKV-LLVLDDVWTEDGNKWESFQRCLINAHR 309 (949)
Q Consensus 243 -~~-----------~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~~~~~~~~l~~~l~~~~~ 309 (949)
+. =+-+.++|++++....+ +.. -..+.| ++|+-.+++-..+....+++....-..
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~q-----------ie~-~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQ-----------IET-QGQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcc-----------hhh-ccccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 11 12223333333221110 000 012344 677777766555666677777766667
Q ss_pred CcEEEEEccc-hhhHhhhc-CcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHHhhh
Q 043039 310 GSKILVTTRK-ETVARMIG-STCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIGSLL 387 (949)
Q Consensus 310 gs~iivTtr~-~~v~~~~~-~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 387 (949)
.+|+|+...+ ..+...+. ..-.+++...+++|....+.+.+-.++-..+ .+++.+|+++++|.---...+-..+
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp----~~~l~rIa~kS~~nLRrAllmlE~~ 232 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP----KELLKRIAEKSNRNLRRALLMLEAV 232 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc----HHHHHHHHHHhcccHHHHHHHHHHH
Confidence 7888886554 22222222 2457899999999999999887754432212 7788999999988654333333333
Q ss_pred ccC---------C-CHHHHHHHHhhh
Q 043039 388 RFK---------K-AREEWQSILDSE 403 (949)
Q Consensus 388 ~~~---------~-~~~~w~~~l~~~ 403 (949)
+-+ . ...+|.-++...
T Consensus 233 ~~~n~~~~a~~~~i~~~dWe~~i~e~ 258 (351)
T KOG2035|consen 233 RVNNEPFTANSQVIPKPDWEIYIQEI 258 (351)
T ss_pred HhccccccccCCCCCCccHHHHHHHH
Confidence 211 1 245788776653
No 228
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.80 E-value=0.0017 Score=61.61 Aligned_cols=79 Identities=20% Similarity=0.218 Sum_probs=34.1
Q ss_pred eeEEEeCCccccccccccccccCCCCCCeeeecccCCcccchhhc-CCCCCcEEeecCCCCCCccc--cccccCCCCCee
Q 043039 589 LRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPETFC-ELFNLQNLDLRRCSKFKRLP--QNIGKLVNLRHL 665 (949)
Q Consensus 589 Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~-~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L 665 (949)
.-.+||++|. +..++. +..++.|.+|.|..|.|+.+-+.+. .+++|+.|.|.+|+ +.++- .-+..+++|++|
T Consensus 44 ~d~iDLtdNd---l~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 44 FDAIDLTDND---LRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cceecccccc---hhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCcccee
Confidence 3344555544 333222 3444555555555555554433333 23345555555544 33322 113344455555
Q ss_pred eCCCccc
Q 043039 666 IFDEDDL 672 (949)
Q Consensus 666 ~l~~~~l 672 (949)
.+-+|.+
T Consensus 119 tll~Npv 125 (233)
T KOG1644|consen 119 TLLGNPV 125 (233)
T ss_pred eecCCch
Confidence 4444433
No 229
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.80 E-value=0.002 Score=61.14 Aligned_cols=97 Identities=24% Similarity=0.290 Sum_probs=47.8
Q ss_pred ceEEEecCCCCCCcchhhccCCceeEEEeCCcccccccccccccc-CCCCCCeeeecccCCcccc--hhhcCCCCCcEEe
Q 043039 566 LRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIE-KLIHLRYLKLFFVGIEELP--ETFCELFNLQNLD 642 (949)
Q Consensus 566 Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~-~l~~L~~L~L~~~~i~~lp--~~l~~L~~L~~L~ 642 (949)
...++|.+|.+..++. |..++.|..|.|.+|. |..+-..+. .+++|..|.|.+|.|..+- ..+..+++|++|.
T Consensus 44 ~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNr---It~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNR---ITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cceecccccchhhccc-CCCccccceEEecCCc---ceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 3445555555544443 4555555555555555 444432233 3344555555555555441 2344455566666
Q ss_pred ecCCCCCCcccc----ccccCCCCCeeeC
Q 043039 643 LRRCSKFKRLPQ----NIGKLVNLRHLIF 667 (949)
Q Consensus 643 L~~~~~l~~lp~----~i~~L~~L~~L~l 667 (949)
+-+|+ +...+. -+.++++|+.||.
T Consensus 120 ll~Np-v~~k~~YR~yvl~klp~l~~LDF 147 (233)
T KOG1644|consen 120 LLGNP-VEHKKNYRLYVLYKLPSLRTLDF 147 (233)
T ss_pred ecCCc-hhcccCceeEEEEecCcceEeeh
Confidence 55554 332221 2455566666653
No 230
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.80 E-value=0.0086 Score=64.07 Aligned_cols=102 Identities=20% Similarity=0.146 Sum_probs=64.1
Q ss_pred HHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccce-EEEEEeC-CCCCHHHHHHHHHHhcCCC
Q 043039 182 EKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNV-MIWVCVS-DPFDVFRVWKAIIENLDGY 259 (949)
Q Consensus 182 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~-~~~~~~~~~~~i~~~l~~~ 259 (949)
...++++.+..-. .-..+.|+|.+|+|||||++.+.+... .++-+. ++|+.+. ....+.++++.+...+...
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~i~-~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAAVA-ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 4556888776432 223569999999999999999877521 112233 4666665 4567888888888877654
Q ss_pred CCCCcchHH-----HHHHHHhhh--CCceEEEEEeCC
Q 043039 260 TPDLGELNT-----LHQLINNRI--GGKKVLLVLDDV 289 (949)
Q Consensus 260 ~~~~~~~~~-----~~~~l~~~l--~~~~~LlVlDdv 289 (949)
..+...... ....+.+++ ++++++||+|++
T Consensus 193 t~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 193 TFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 432222111 111122222 489999999998
No 231
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.023 Score=58.09 Aligned_cols=79 Identities=16% Similarity=0.256 Sum_probs=48.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcCccc--ccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADV--SNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGG 279 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 279 (949)
|+|.++|++|.|||+|++++++...+ .+.|....-+.+.. ..+....... ...-...+.++|.+.+.+
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins--------hsLFSKWFsE--SgKlV~kmF~kI~ELv~d 247 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS--------HSLFSKWFSE--SGKLVAKMFQKIQELVED 247 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh--------hHHHHHHHhh--hhhHHHHHHHHHHHHHhC
Confidence 78999999999999999999987443 33443333333322 1222222221 122345566677777765
Q ss_pred ce--EEEEEeCCC
Q 043039 280 KK--VLLVLDDVW 290 (949)
Q Consensus 280 ~~--~LlVlDdv~ 290 (949)
+. +++.+|.|.
T Consensus 248 ~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 248 RGNLVFVLIDEVE 260 (423)
T ss_pred CCcEEEEEeHHHH
Confidence 44 567789884
No 232
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.77 E-value=0.002 Score=59.91 Aligned_cols=107 Identities=15% Similarity=0.192 Sum_probs=64.2
Q ss_pred ccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCccc-ccccceEEEEEeCCCCCHHHHHHHHHHh
Q 043039 177 CGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADV-SNNFNVMIWVCVSDPFDVFRVWKAIIEN 255 (949)
Q Consensus 177 ~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 255 (949)
||+...++++.+.+..-.. ....|.|+|..|+||+++|+.++..... ...|..+ .+...
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~~------------- 60 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCASL------------- 60 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHCT-------------
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhhC-------------
Confidence 5777777777777654321 2246789999999999999998875322 1222111 01110
Q ss_pred cCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhcc-CCCcEEEEEccc
Q 043039 256 LDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINA-HRGSKILVTTRK 319 (949)
Q Consensus 256 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtr~ 319 (949)
. .+.+.+. +.--++|+|+..-+......+...+... ....|+|.||+.
T Consensus 61 ---------~----~~~l~~a---~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 61 ---------P----AELLEQA---KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp ---------C----HHHHHHC---TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred ---------c----HHHHHHc---CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 0 1111111 3345789999887767777787777653 567899999885
No 233
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.77 E-value=0.0029 Score=55.74 Aligned_cols=21 Identities=48% Similarity=0.581 Sum_probs=18.6
Q ss_pred EEEEecCCChHHHHHHHHHcC
Q 043039 204 ISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 204 i~I~G~~GiGKTtLa~~v~~~ 224 (949)
|-|+|.+|+|||++|+.+..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998775
No 234
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.75 E-value=0.0033 Score=67.19 Aligned_cols=102 Identities=19% Similarity=0.197 Sum_probs=56.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCce
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKK 281 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 281 (949)
.-+.++|..|+|||.||..+.+.... .-..++++++.. ++..+...-.. ...+.... .+.+.+ -
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~--~g~~V~y~t~~~------l~~~l~~~~~~---~~~~~~~~----~~~l~~-~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLD--RGKSVIYRTADE------LIEILREIRFN---NDKELEEV----YDLLIN-C 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHH--CCCeEEEEEHHH------HHHHHHHHHhc---cchhHHHH----HHHhcc-C
Confidence 56899999999999999999886322 223566666542 33333221111 01111111 122222 2
Q ss_pred EEEEEeCCCCCCcccHHH--HHHhhhcc-CCCcEEEEEccc
Q 043039 282 VLLVLDDVWTEDGNKWES--FQRCLINA-HRGSKILVTTRK 319 (949)
Q Consensus 282 ~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 319 (949)
=||||||+..+....|.. +...+... ..+-.+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 389999996654444433 43333332 234568998875
No 235
>PRK07261 topology modulation protein; Provisional
Probab=96.74 E-value=0.0031 Score=61.00 Aligned_cols=65 Identities=17% Similarity=0.236 Sum_probs=39.4
Q ss_pred EEEEEecCCChHHHHHHHHHcCcccc-cccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCce
Q 043039 203 VISLVGMGGIGKTTLAQLAYNDADVS-NNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKK 281 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 281 (949)
.|.|+|++|+||||||+.+....... -+.|...|-... ...+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW---------------------QERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc---------------------ccCCHHHHHHHHHHHHhCCC
Confidence 48899999999999999987642221 133445552110 11123445555566666666
Q ss_pred EEEEEeCCC
Q 043039 282 VLLVLDDVW 290 (949)
Q Consensus 282 ~LlVlDdv~ 290 (949)
.|+|+..
T Consensus 61 --wIidg~~ 67 (171)
T PRK07261 61 --WIIDGNY 67 (171)
T ss_pred --EEEcCcc
Confidence 6788873
No 236
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.034 Score=60.62 Aligned_cols=150 Identities=17% Similarity=0.265 Sum_probs=88.0
Q ss_pred CCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhh
Q 043039 198 PNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRI 277 (949)
Q Consensus 198 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 277 (949)
..++..+.+.|++|+|||+||..+... ..|..+--++..+- ++. .+......+.......-
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe~m-------------iG~--sEsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPEDM-------------IGL--SESAKCAHIKKIFEDAY 595 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChHHc-------------cCc--cHHHHHHHHHHHHHHhh
Confidence 345677889999999999999999875 45654443332211 111 01112223334444555
Q ss_pred CCceEEEEEeCCCCCCcccHH------------HHHHhhhcc-CCCcEEEE--EccchhhHhhhcC----cceEeCCCCC
Q 043039 278 GGKKVLLVLDDVWTEDGNKWE------------SFQRCLINA-HRGSKILV--TTRKETVARMIGS----TCVISIEELS 338 (949)
Q Consensus 278 ~~~~~LlVlDdv~~~~~~~~~------------~l~~~l~~~-~~gs~iiv--Ttr~~~v~~~~~~----~~~~~l~~l~ 338 (949)
+..--.||+||+..- -+|- .+.-.+... .+|-|.+| ||..+.+.+.|+- ...+.+..++
T Consensus 596 kS~lsiivvDdiErL--iD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDIERL--LDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcchhhh--hcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 666779999999432 2222 222223222 23445444 7777888887764 4578899888
Q ss_pred h-HhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhc
Q 043039 339 E-PECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKC 373 (949)
Q Consensus 339 ~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 373 (949)
. ++..+.++..-. -.+.+...++++.+.+|
T Consensus 674 ~~~~~~~vl~~~n~-----fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELNI-----FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHccC-----CCcchhHHHHHHHhccc
Confidence 7 777777766431 12334566666666666
No 237
>PTZ00494 tuzin-like protein; Provisional
Probab=96.73 E-value=0.57 Score=50.66 Aligned_cols=170 Identities=13% Similarity=0.175 Sum_probs=106.0
Q ss_pred cccccCccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHH
Q 043039 169 ALINVSEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRV 248 (949)
Q Consensus 169 ~~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 248 (949)
....+..++.|+++-..+...|..-+ ...++++++.|.-|.||++|.+....... -..++|++.... +.
T Consensus 366 a~a~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~E---Dt 434 (664)
T PTZ00494 366 AAAAEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGTE---DT 434 (664)
T ss_pred cccccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCCc---ch
Confidence 34456679999999888888886554 45789999999999999999998877533 246677776544 45
Q ss_pred HHHHHHhcCCCCCCC-cc-hHHHHHHHH---hhhCCceEEEEEeCCCCCCc-ccHHHHHHhhhccCCCcEEEEEccchhh
Q 043039 249 WKAIIENLDGYTPDL-GE-LNTLHQLIN---NRIGGKKVLLVLDDVWTEDG-NKWESFQRCLINAHRGSKILVTTRKETV 322 (949)
Q Consensus 249 ~~~i~~~l~~~~~~~-~~-~~~~~~~l~---~~l~~~~~LlVlDdv~~~~~-~~~~~l~~~l~~~~~gs~iivTtr~~~v 322 (949)
++.+++.++.+..+. .| ++.+.+... ....++.=+||+-==+..+. .-+++.. .|.....-|.|++---.+.+
T Consensus 435 LrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESL 513 (664)
T PTZ00494 435 LRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKAL 513 (664)
T ss_pred HHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhh
Confidence 677888888654332 22 333333333 23456666677653211110 1122221 23334456777775544433
Q ss_pred Hhhh---cCcceEeCCCCChHhHHHHHHHHh
Q 043039 323 ARMI---GSTCVISIEELSEPECWSLFKRFA 350 (949)
Q Consensus 323 ~~~~---~~~~~~~l~~l~~~~~~~l~~~~~ 350 (949)
.-.. ..-..|.+.+++.++|.++-.+..
T Consensus 514 T~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 514 TPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred chhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 3211 124578999999999999887654
No 238
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.72 E-value=0.0055 Score=61.88 Aligned_cols=49 Identities=12% Similarity=0.184 Sum_probs=36.4
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHH
Q 043039 199 NAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWK 250 (949)
Q Consensus 199 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 250 (949)
..-+++.|+|++|+|||++|.++... .......++|++... ++...+.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 34589999999999999999887764 223346789999876 66554433
No 239
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.70 E-value=0.0042 Score=64.12 Aligned_cols=81 Identities=21% Similarity=0.235 Sum_probs=48.2
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCc
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGK 280 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 280 (949)
..-+.++|.+|+|||.||.++.++.- ..--.+.++++. +++.++...... ......+.+.+..
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~--~~g~sv~f~~~~------el~~~Lk~~~~~--------~~~~~~l~~~l~~- 167 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL--KAGISVLFITAP------DLLSKLKAAFDE--------GRLEEKLLRELKK- 167 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEEHH------HHHHHHHHHHhc--------CchHHHHHHHhhc-
Confidence 34688999999999999999998743 222345555543 444554444332 1112222222222
Q ss_pred eEEEEEeCCCCCCcccHH
Q 043039 281 KVLLVLDDVWTEDGNKWE 298 (949)
Q Consensus 281 ~~LlVlDdv~~~~~~~~~ 298 (949)
-=||||||+..+....|.
T Consensus 168 ~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 168 VDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred CCEEEEecccCccCCHHH
Confidence 228999999765545554
No 240
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.028 Score=62.36 Aligned_cols=158 Identities=17% Similarity=0.244 Sum_probs=88.4
Q ss_pred CccccchhHHHHHHHHHccCCCC------CCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAE------QPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFR 247 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 247 (949)
.++=|.++.+.++.+++..-... +-...+-|.++|++|.|||.||+++.++..+ .| +.++.
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v--Pf-----~~isA------ 256 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV--PF-----LSISA------ 256 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC--ce-----Eeecc------
Confidence 45668898888888877542211 1234566889999999999999999997332 22 23332
Q ss_pred HHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCC-----------cccHHHHHHhhhc----cCCCcE
Q 043039 248 VWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTED-----------GNKWESFQRCLIN----AHRGSK 312 (949)
Q Consensus 248 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----------~~~~~~l~~~l~~----~~~gs~ 312 (949)
-+|+..+.+. ..+.+.+.+.+.-+.-++++++|+++-.. .....++...+.. ...|-.
T Consensus 257 --peivSGvSGE-----SEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~ 329 (802)
T KOG0733|consen 257 --PEIVSGVSGE-----SEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDP 329 (802)
T ss_pred --hhhhcccCcc-----cHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCC
Confidence 1233333322 22334445555666789999999995311 0112223333221 112333
Q ss_pred EEE---EccchhhHhh---hcC-cceEeCCCCChHhHHHHHHHHhh
Q 043039 313 ILV---TTRKETVARM---IGS-TCVISIEELSEPECWSLFKRFAF 351 (949)
Q Consensus 313 iiv---Ttr~~~v~~~---~~~-~~~~~l~~l~~~~~~~l~~~~~~ 351 (949)
||| |+|...+-.. .+. ++.|-+.--++.+-.+++...+-
T Consensus 330 VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~ 375 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICR 375 (802)
T ss_pred eEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHh
Confidence 444 4444333222 222 45677777777776777766653
No 241
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.67 E-value=0.01 Score=68.42 Aligned_cols=44 Identities=34% Similarity=0.496 Sum_probs=35.5
Q ss_pred ccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 175 EVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
+++|.+..++.+...+.... ..-+.|+|++|+|||++|+.+++.
T Consensus 66 ~iiGqs~~i~~l~~al~~~~------~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPN------PQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCC------CceEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999988775432 234678999999999999999763
No 242
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.66 E-value=0.0071 Score=59.09 Aligned_cols=37 Identities=30% Similarity=0.491 Sum_probs=27.8
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEE
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVC 238 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 238 (949)
...+|.+.|+.|+||||+|+.++.. ....+..++++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEe
Confidence 3469999999999999999999875 333444555553
No 243
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.66 E-value=0.019 Score=61.54 Aligned_cols=71 Identities=11% Similarity=0.099 Sum_probs=49.4
Q ss_pred CceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccchh-hHhhhc-CcceEeCCCCChHhHHHHHHHH
Q 043039 279 GKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKET-VARMIG-STCVISIEELSEPECWSLFKRF 349 (949)
Q Consensus 279 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~-~~~~~~l~~l~~~~~~~l~~~~ 349 (949)
+++-++|+|++...+....+.+...+.....++.+|++|.+.. +...+. ....+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3344556799988777777777777765555666777777644 443332 3568899999999998888653
No 244
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.64 E-value=0.01 Score=57.11 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=29.8
Q ss_pred EEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCC
Q 043039 203 VISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFD 244 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 244 (949)
++.|+|.+|+||||++..+.... ...-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcchH
Confidence 36899999999999999987752 22345678888776544
No 245
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.64 E-value=0.0065 Score=68.64 Aligned_cols=90 Identities=20% Similarity=0.207 Sum_probs=60.8
Q ss_pred CCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhh
Q 043039 198 PNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRI 277 (949)
Q Consensus 198 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 277 (949)
.+.-+++.++|++|.||||||.-++++.. | .++-|++|+.-+...+-..|...+........
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l~a------------- 384 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSVLDA------------- 384 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhcccccc-------------
Confidence 45668999999999999999999998632 2 47778888877666655555544433211100
Q ss_pred CCceEEEEEeCCCCCCcccHHHHHHhhh
Q 043039 278 GGKKVLLVLDDVWTEDGNKWESFQRCLI 305 (949)
Q Consensus 278 ~~~~~LlVlDdv~~~~~~~~~~l~~~l~ 305 (949)
.+++.-+|+|.++.......+.+.+.+.
T Consensus 385 dsrP~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred CCCcceEEEecccCCcHHHHHHHHHHHH
Confidence 2578889999997655444555555553
No 246
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.61 E-value=0.0037 Score=60.09 Aligned_cols=154 Identities=18% Similarity=0.262 Sum_probs=73.0
Q ss_pred EEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCC---CcchHHHHHHHHhhhCC
Q 043039 203 VISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPD---LGELNTLHQLINNRIGG 279 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~~l~~ 279 (949)
++.|.|.+|+||||+|..+..... ..++++.-...++. +..+.|.......... ......+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~-----~~~~~iat~~~~~~-e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG-----LQVLYIATAQPFDD-EMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC-----CCcEeCcCCCCChH-HHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 689999999999999998876411 12334443333333 3334443332222111 11122344444443333
Q ss_pred ceEEEEEeCC--CC----C-Cc-ccHHH-HHHhhhc-cCCCcEEEEEccchhhHhhhcCcceEeCCCCChHhHHHHHHHH
Q 043039 280 KKVLLVLDDV--WT----E-DG-NKWES-FQRCLIN-AHRGSKILVTTRKETVARMIGSTCVISIEELSEPECWSLFKRF 349 (949)
Q Consensus 280 ~~~LlVlDdv--~~----~-~~-~~~~~-l~~~l~~-~~~gs~iivTtr~~~v~~~~~~~~~~~l~~l~~~~~~~l~~~~ 349 (949)
.. ++++|.+ |- . +. ..|.. +...+.. ...+..+|+|+.... .+..+.++.-+.|...
T Consensus 77 ~~-~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~~~~tvVlVs~Evg------------~g~vp~~~~~r~~~d~ 143 (170)
T PRK05800 77 GR-CVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQLPAKIILVTNEVG------------MGIVPEYRLGRHFRDI 143 (170)
T ss_pred CC-EEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHcCCCCEEEEEcCCc------------ccccCCCHHHHHHHHH
Confidence 22 7899997 21 0 10 12222 1111111 234555777765321 1233344555566655
Q ss_pred hhccCCCCCchhHHHHHHHHHHhcCCCchHH
Q 043039 350 AFLNRSRSDCKQLEEIGRKITWKCKGLPLAV 380 (949)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 380 (949)
.+. -.+.+...++++.....|+|+-+
T Consensus 144 lG~-----lnq~la~~ad~V~~v~~Gi~~~l 169 (170)
T PRK05800 144 AGR-----LNQQLAAAADEVYLVVAGLPLKL 169 (170)
T ss_pred HHH-----HHHHHHHHCCEEEEEeCCCcEec
Confidence 532 23344444444444556888654
No 247
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.60 E-value=0.0068 Score=61.99 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=34.2
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFR 247 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 247 (949)
.-.++.|+|.+|+|||++|.++.... ......++|++.. .++...
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~--~~~~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEA--AKNGKKVIYIDTE-GLSPER 66 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEECC-CCCHHH
Confidence 45799999999999999998887642 2234678899988 555544
No 248
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.58 E-value=0.00082 Score=62.80 Aligned_cols=88 Identities=24% Similarity=0.109 Sum_probs=47.9
Q ss_pred EEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEE
Q 043039 204 ISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVL 283 (949)
Q Consensus 204 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 283 (949)
|.++|++|+|||+||+.++... -....-+.++...+..+++...--. ..........+.+.+. +..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~-----~~~~~~i~~~~~~~~~dl~g~~~~~---~~~~~~~~~~l~~a~~-----~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL-----GRPVIRINCSSDTTEEDLIGSYDPS---NGQFEFKDGPLVRAMR-----KGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH-----TCEEEEEE-TTTSTHHHHHCEEET----TTTTCEEE-CCCTTHH-----EEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh-----hcceEEEEeccccccccceeeeeec---cccccccccccccccc-----ceeE
Confidence 6789999999999999998742 1234446777777776654322111 0000000011111111 6899
Q ss_pred EEEeCCCCCCcccHHHHHHhh
Q 043039 284 LVLDDVWTEDGNKWESFQRCL 304 (949)
Q Consensus 284 lVlDdv~~~~~~~~~~l~~~l 304 (949)
+|||++.......+..+...+
T Consensus 69 l~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHH
T ss_pred EEECCcccCCHHHHHHHHHHH
Confidence 999999765444444444444
No 249
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.54 E-value=0.088 Score=51.76 Aligned_cols=122 Identities=20% Similarity=0.308 Sum_probs=70.2
Q ss_pred cccCccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHH
Q 043039 171 INVSEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWK 250 (949)
Q Consensus 171 ~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 250 (949)
++-..++|-+...+.+.+--..-.. +....-|.+||.-|+|||.|++++.+. .....-..+- |..
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~--G~pANnVLLwGaRGtGKSSLVKA~~~e--~~~~glrLVE--V~k--------- 121 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAE--GLPANNVLLWGARGTGKSSLVKALLNE--YADEGLRLVE--VDK--------- 121 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHc--CCcccceEEecCCCCChHHHHHHHHHH--HHhcCCeEEE--EcH---------
Confidence 3445689988888887764321111 122345789999999999999999885 2222222222 211
Q ss_pred HHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCC-CCcccHHHHHHhhhcc---CCCcEEEEEccc
Q 043039 251 AIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWT-EDGNKWESFQRCLINA---HRGSKILVTTRK 319 (949)
Q Consensus 251 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~---~~gs~iivTtr~ 319 (949)
.+..++..+...++. ..+||+|..||.-- ++...+..+...+..+ .+.-.++..|.+
T Consensus 122 ----------~dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 122 ----------EDLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred ----------HHHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 112223333444433 47899999999943 3335677777776543 233334444544
No 250
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.52 E-value=0.043 Score=51.89 Aligned_cols=57 Identities=16% Similarity=0.157 Sum_probs=37.6
Q ss_pred HHHHhhhCCceEEEEEeCCC-CCCcccHHHHHHhhhc-cCCCcEEEEEccchhhHhhhc
Q 043039 271 QLINNRIGGKKVLLVLDDVW-TEDGNKWESFQRCLIN-AHRGSKILVTTRKETVARMIG 327 (949)
Q Consensus 271 ~~l~~~l~~~~~LlVlDdv~-~~~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~~~~ 327 (949)
-.|.+.+-+++-+++-|.-- +.|++.-.++...|.. +..|+.||++|.+..+.+.+.
T Consensus 146 vaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 146 VAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 34666777888899998752 2233322334444443 567999999999998887653
No 251
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.50 E-value=0.012 Score=61.30 Aligned_cols=134 Identities=26% Similarity=0.321 Sum_probs=73.7
Q ss_pred cccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcC-cccccccceEE-E---EEeCCC--------
Q 043039 176 VCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYND-ADVSNNFNVMI-W---VCVSDP-------- 242 (949)
Q Consensus 176 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~-~~~~~~f~~~~-w---v~~~~~-------- 242 (949)
+-+|..+..--.++|..+ ++..|.+.|.+|.|||.||-+..-. ...++.|..++ . +.++++
T Consensus 226 i~prn~eQ~~ALdlLld~------dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 226 IRPRNAEQRVALDLLLDD------DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred cCcccHHHHHHHHHhcCC------CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCch
Confidence 446778877788888754 4789999999999999999543211 11233443322 1 122221
Q ss_pred -CCHHHHHHHHHHhc---CCCCCCCcchHHHHHHHH---------hhhCCc---eEEEEEeCCCCCCcccHHHHHHhhhc
Q 043039 243 -FDVFRVWKAIIENL---DGYTPDLGELNTLHQLIN---------NRIGGK---KVLLVLDDVWTEDGNKWESFQRCLIN 306 (949)
Q Consensus 243 -~~~~~~~~~i~~~l---~~~~~~~~~~~~~~~~l~---------~~l~~~---~~LlVlDdv~~~~~~~~~~l~~~l~~ 306 (949)
..+.--++.|...+ ..... .. .+.+...+. .+.+++ +-+||+|.+.+-.+ .++...+..
T Consensus 300 EeKm~PWmq~i~DnLE~L~~~~~-~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp---heikTiltR 374 (436)
T COG1875 300 EEKMGPWMQAIFDNLEVLFSPNE-PG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP---HELKTILTR 374 (436)
T ss_pred hhhccchHHHHHhHHHHHhcccc-cc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH---HHHHHHHHh
Confidence 11111122222222 11111 11 122222211 334554 45999999977543 456666777
Q ss_pred cCCCcEEEEEccch
Q 043039 307 AHRGSKILVTTRKE 320 (949)
Q Consensus 307 ~~~gs~iivTtr~~ 320 (949)
.+.||||+.|.-..
T Consensus 375 ~G~GsKIVl~gd~a 388 (436)
T COG1875 375 AGEGSKIVLTGDPA 388 (436)
T ss_pred ccCCCEEEEcCCHH
Confidence 88999999987643
No 252
>PHA02244 ATPase-like protein
Probab=96.48 E-value=0.015 Score=62.06 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
-|.|+|++|+|||+||+++...
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999875
No 253
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.47 E-value=0.0074 Score=61.39 Aligned_cols=43 Identities=16% Similarity=0.126 Sum_probs=32.0
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFD 244 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 244 (949)
.-+++.|.|.+|+||||+|.++.... ...-..++|++....++
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~--~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET--AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCCCCH
Confidence 45799999999999999998887642 22334678888765554
No 254
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.47 E-value=0.022 Score=69.13 Aligned_cols=180 Identities=16% Similarity=0.141 Sum_probs=93.4
Q ss_pred CccccchhHHHHHHHHHccCCCC-------CCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAE-------QPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVF 246 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 246 (949)
.++.|.+..++++.+++...-.. +-...+-+.++|++|+|||+||+.+++.. ...| +.++.+.
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~--~~~~---i~i~~~~----- 247 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA--GAYF---ISINGPE----- 247 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh--CCeE---EEEecHH-----
Confidence 45889999999998876432100 11233568899999999999999998852 2222 2222211
Q ss_pred HHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCc-----------ccHHHHHHhhhcc-CCCcEEE
Q 043039 247 RVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDG-----------NKWESFQRCLINA-HRGSKIL 314 (949)
Q Consensus 247 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-----------~~~~~l~~~l~~~-~~gs~ii 314 (949)
+.....+ .....+...+.......+.+|++|+++.... .....+...+... ..+..++
T Consensus 248 -----i~~~~~g-----~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv 317 (733)
T TIGR01243 248 -----IMSKYYG-----ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV 317 (733)
T ss_pred -----Hhccccc-----HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE
Confidence 1111100 1112233333344456678999999853210 0122233333222 2233444
Q ss_pred E-Eccchh-hHhhhc----CcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCch
Q 043039 315 V-TTRKET-VARMIG----STCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPL 378 (949)
Q Consensus 315 v-Ttr~~~-v~~~~~----~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 378 (949)
| ||.... +...+. -...+.+...+.++..+++..+.-.... ... .....+++.+.|..-
T Consensus 318 I~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-~~d----~~l~~la~~t~G~~g 382 (733)
T TIGR01243 318 IGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-AED----VDLDKLAEVTHGFVG 382 (733)
T ss_pred EeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-ccc----cCHHHHHHhCCCCCH
Confidence 4 444332 111111 1346778888888888888865422111 111 124556677777653
No 255
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.47 E-value=0.015 Score=59.93 Aligned_cols=89 Identities=16% Similarity=0.144 Sum_probs=53.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCccccc----ccceEEEEEeCCCCCHHHHHHHHHHhcCCCCC------------CC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVSN----NFNVMIWVCVSDPFDVFRVWKAIIENLDGYTP------------DL 263 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------~~ 263 (949)
.-.++.|+|.+|+|||++|.+++-...... ....++|++....++..++ .++++..+.... +.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCCH
Confidence 457999999999999999998864321111 2367999999887775443 344444332111 11
Q ss_pred cchHHHHHHHHhhhC-C-ceEEEEEeCC
Q 043039 264 GELNTLHQLINNRIG-G-KKVLLVLDDV 289 (949)
Q Consensus 264 ~~~~~~~~~l~~~l~-~-~~~LlVlDdv 289 (949)
.+.......+.+.+. . +.-+||+|.+
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSi 124 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSV 124 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCc
Confidence 122223333444443 3 5668888888
No 256
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.45 E-value=0.014 Score=54.81 Aligned_cols=116 Identities=16% Similarity=0.052 Sum_probs=61.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEE---eCCCCCHHHHHHHHHHhc-----CCC----CCC-Ccc---
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVC---VSDPFDVFRVWKAIIENL-----DGY----TPD-LGE--- 265 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~---~~~~~~~~~~~~~i~~~l-----~~~----~~~-~~~--- 265 (949)
..|-|++-.|.||||+|....-. ..++-..+.++. ......-..+++.+- .+ +.. ..+ ..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~r--a~~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALR--ALGHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHH
Confidence 47788888899999999655432 112222233332 222333333333330 11 000 000 011
Q ss_pred hHHHHHHHHhhhCCce-EEEEEeCCCC---CCcccHHHHHHhhhccCCCcEEEEEccch
Q 043039 266 LNTLHQLINNRIGGKK-VLLVLDDVWT---EDGNKWESFQRCLINAHRGSKILVTTRKE 320 (949)
Q Consensus 266 ~~~~~~~l~~~l~~~~-~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 320 (949)
.....+..++.+.... =|+|||++-. ......+.+...+.....+.-||+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1112233344444434 4999999832 22345667777787777788999999983
No 257
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.44 E-value=0.03 Score=54.86 Aligned_cols=119 Identities=14% Similarity=0.092 Sum_probs=64.3
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeC--CCCCHHH------HHHHHHHhcCCCC-----CCCcchHH
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVS--DPFDVFR------VWKAIIENLDGYT-----PDLGELNT 268 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~--~~~~~~~------~~~~i~~~l~~~~-----~~~~~~~~ 268 (949)
.+++|+|..|.|||||++.+.... ......+++.-. ...+... ...++++.++... ...-...+
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 489999999999999999998752 223333433211 1112211 1122444444321 11111111
Q ss_pred -HHHHHHhhhCCceEEEEEeCCCC-CCcccHHHHHHhhhccC-C-CcEEEEEccchhhH
Q 043039 269 -LHQLINNRIGGKKVLLVLDDVWT-EDGNKWESFQRCLINAH-R-GSKILVTTRKETVA 323 (949)
Q Consensus 269 -~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~~-~-gs~iivTtr~~~v~ 323 (949)
..-.+.+.+-..+-++++|+--. .|......+...+.... . |..||++|.+....
T Consensus 103 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 12234455566778999999743 23334445555554432 2 66788888886654
No 258
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.43 E-value=0.063 Score=57.00 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=23.9
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 199 NAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 199 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..++.++|||++|.|||.+|+.++++
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999996
No 259
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.03 Score=63.24 Aligned_cols=133 Identities=17% Similarity=0.151 Sum_probs=76.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCC--CHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhh
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPF--DVFRVWKAIIENLDGYTPDLGELNTLHQLINNRI 277 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 277 (949)
...-|.|.|+.|+|||+||+++++... +.+.-.+.+|+++.-. .+..+++ .+...+.+.+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk-----------------~l~~vfse~~ 491 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQK-----------------FLNNVFSEAL 491 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHH-----------------HHHHHHHHHH
Confidence 345688999999999999999998744 5555667777777521 1222211 1223444566
Q ss_pred CCceEEEEEeCCCC------CCcccHHH----HHHhhh-----ccCCCcE--EEEEccchhhHh-hhc----CcceEeCC
Q 043039 278 GGKKVLLVLDDVWT------EDGNKWES----FQRCLI-----NAHRGSK--ILVTTRKETVAR-MIG----STCVISIE 335 (949)
Q Consensus 278 ~~~~~LlVlDdv~~------~~~~~~~~----l~~~l~-----~~~~gs~--iivTtr~~~v~~-~~~----~~~~~~l~ 335 (949)
...+-+|||||++- ....+|.. +..++. ....+.+ +|-|.....-.+ ... ....+.+.
T Consensus 492 ~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 77899999999942 11122322 222221 1233444 444554432221 111 13467788
Q ss_pred CCChHhHHHHHHHHh
Q 043039 336 ELSEPECWSLFKRFA 350 (949)
Q Consensus 336 ~l~~~~~~~l~~~~~ 350 (949)
.+...+-.++++...
T Consensus 572 ap~~~~R~~IL~~~~ 586 (952)
T KOG0735|consen 572 APAVTRRKEILTTIF 586 (952)
T ss_pred CcchhHHHHHHHHHH
Confidence 888877777776654
No 260
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.38 E-value=0.0025 Score=57.89 Aligned_cols=22 Identities=41% Similarity=0.469 Sum_probs=20.3
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
+|+|.|++|+||||+|+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 261
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.38 E-value=0.035 Score=62.75 Aligned_cols=159 Identities=19% Similarity=0.169 Sum_probs=82.3
Q ss_pred CccccchhHHHHHHHHHcc---C-CCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLS---E-TAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVW 249 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~---~-~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 249 (949)
.++-|.+..++.+...... . ...+-...+-|.++|++|+|||.+|+.+.+... ..| +-++++.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~--~~~---~~l~~~~-------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ--LPL---LRLDVGK-------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CCE---EEEEhHH--------
Confidence 3567877666655542211 0 000112346788999999999999999988522 122 1222211
Q ss_pred HHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCC--------CcccHHH----HHHhhhccCCCcEEEEEc
Q 043039 250 KAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTE--------DGNKWES----FQRCLINAHRGSKILVTT 317 (949)
Q Consensus 250 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--------~~~~~~~----l~~~l~~~~~gs~iivTt 317 (949)
+.....+ .....+.+.+...-...+++|++|+++.. +...-.. +...+.....+.-||.||
T Consensus 295 --l~~~~vG-----ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 295 --LFGGIVG-----ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred --hcccccC-----hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 1111101 01112222333222357899999999531 0001111 222222233344455577
Q ss_pred cchhhH-hhh----cCcceEeCCCCChHhHHHHHHHHhhc
Q 043039 318 RKETVA-RMI----GSTCVISIEELSEPECWSLFKRFAFL 352 (949)
Q Consensus 318 r~~~v~-~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~ 352 (949)
...... ..+ .-+..+.++.-+.++-.++|..+...
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 654321 111 12457888888999999999888754
No 262
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.38 E-value=0.0013 Score=65.22 Aligned_cols=81 Identities=28% Similarity=0.312 Sum_probs=44.6
Q ss_pred ceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCccc--chhhcCCCCCcEEee
Q 043039 566 LRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEEL--PETFCELFNLQNLDL 643 (949)
Q Consensus 566 Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~l--p~~l~~L~~L~~L~L 643 (949)
|..|.+.+..++.+.. |..+++|+.|.++.|.......++-...++++|++|++++|+|..+ -..+..+.+|..|++
T Consensus 45 le~ls~~n~gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl 123 (260)
T KOG2739|consen 45 LELLSVINVGLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDL 123 (260)
T ss_pred hhhhhhhccceeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhc
Confidence 3333344443333322 4456677777777763322334444455567777777777776532 123445666777777
Q ss_pred cCCC
Q 043039 644 RRCS 647 (949)
Q Consensus 644 ~~~~ 647 (949)
..|.
T Consensus 124 ~n~~ 127 (260)
T KOG2739|consen 124 FNCS 127 (260)
T ss_pred ccCC
Confidence 7766
No 263
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.37 E-value=0.011 Score=61.18 Aligned_cols=56 Identities=20% Similarity=0.254 Sum_probs=40.0
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCccc----ccccceEEEEEeCCCCCHHHHHHHHHHhcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADV----SNNFNVMIWVCVSDPFDVFRVWKAIIENLD 257 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 257 (949)
-.+.=|+|.+|+|||+||.+++-.... .+.-..++|++-...|+..++. +|++...
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 358999999999999999777543211 2233569999999999887764 5666543
No 264
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.37 E-value=0.044 Score=54.49 Aligned_cols=56 Identities=16% Similarity=0.214 Sum_probs=37.7
Q ss_pred HHHHhhhCCceEEEEEeCCC-CCCcccHHHHHHhhhcc--CCCcEEEEEccchhhHhhh
Q 043039 271 QLINNRIGGKKVLLVLDDVW-TEDGNKWESFQRCLINA--HRGSKILVTTRKETVARMI 326 (949)
Q Consensus 271 ~~l~~~l~~~~~LlVlDdv~-~~~~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~~ 326 (949)
-.+.+.|-..+-+|+-|+-- +-|...-..+...+... ..|..||+.|.+..++..+
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC
Confidence 35667777888899999752 22333344455555443 4477899999999999854
No 265
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.13 Score=53.82 Aligned_cols=187 Identities=17% Similarity=0.170 Sum_probs=102.5
Q ss_pred ccccchhHHHHHHHHHccCCCC-------CCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 043039 175 EVCGRNEEKNALKGKLLSETAE-------QPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFR 247 (949)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 247 (949)
.+=|-++.+++|.+...-+-.+ +-..++=|.++|++|.|||-||++|+++ ....| +.+..
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----Irvvg------ 218 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVG------ 218 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEecc------
Confidence 3557788888888875332110 2235567889999999999999999996 43344 22221
Q ss_pred HHHHHHHhcCCCCCCCcchHHHHHHHHhhhC-CceEEEEEeCCCCC-----------CcccHH---HHHHhhhcc--CCC
Q 043039 248 VWKAIIENLDGYTPDLGELNTLHQLINNRIG-GKKVLLVLDDVWTE-----------DGNKWE---SFQRCLINA--HRG 310 (949)
Q Consensus 248 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~-----------~~~~~~---~l~~~l~~~--~~g 310 (949)
.++++..-+ +-..+.+.+.+.-+ +.+.+|.+|.++.- +.+... ++...+..+ ...
T Consensus 219 --SElVqKYiG------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 219 --SELVQKYIG------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred --HHHHHHHhc------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 122222211 11223333333333 57899999998531 111111 222222222 235
Q ss_pred cEEEEEccchhhHhhh----c-CcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCc----hHHH
Q 043039 311 SKILVTTRKETVARMI----G-STCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLP----LAVK 381 (949)
Q Consensus 311 s~iivTtr~~~v~~~~----~-~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P----lal~ 381 (949)
.|||..|...++.... + -+..+++..-+.+.-.++|.-++-.- ...+.-+++.+ ++.|.|.- -|+.
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM-~l~~dvd~e~l----a~~~~g~sGAdlkaic 365 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM-NLADDVDLELL----ARLTEGFSGADLKAIC 365 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc-cCccCcCHHHH----HHhcCCCchHHHHHHH
Confidence 6899988775554321 2 25678888666666677887776332 22333455554 44455543 3444
Q ss_pred HHHhhh
Q 043039 382 TIGSLL 387 (949)
Q Consensus 382 ~~~~~l 387 (949)
+=|+++
T Consensus 366 tEAGm~ 371 (406)
T COG1222 366 TEAGMF 371 (406)
T ss_pred HHHhHH
Confidence 545554
No 266
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.37 E-value=0.015 Score=59.50 Aligned_cols=90 Identities=16% Similarity=0.139 Sum_probs=53.2
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCccccc----ccceEEEEEeCCCCCHHHHHHHHHHhcCCCC---------CCCcch
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVSN----NFNVMIWVCVSDPFDVFRVWKAIIENLDGYT---------PDLGEL 266 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------~~~~~~ 266 (949)
.-.++.|+|.+|+|||++|.++.......+ .=..++|++....++...+. .+.+...... ....+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYNG 96 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCCH
Confidence 457999999999999999988765421111 11567899988777765443 3333322110 011234
Q ss_pred HHHHHHHHhhhC----CceEEEEEeCCC
Q 043039 267 NTLHQLINNRIG----GKKVLLVLDDVW 290 (949)
Q Consensus 267 ~~~~~~l~~~l~----~~~~LlVlDdv~ 290 (949)
+++...+.+... .+.-+||+|.+.
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 97 EQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 444444444332 345589999983
No 267
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.35 E-value=0.14 Score=54.26 Aligned_cols=157 Identities=13% Similarity=0.053 Sum_probs=78.6
Q ss_pred cccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHh
Q 043039 176 VCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIEN 255 (949)
Q Consensus 176 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 255 (949)
++=..+....+..++... +-|.|.|.+|+||||+|+.+... .... .+.|.++...+..++...-.-.
T Consensus 47 y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~~--l~~~---~~rV~~~~~l~~~DliG~~~~~ 113 (327)
T TIGR01650 47 YLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAAR--LNWP---CVRVNLDSHVSRIDLVGKDAIV 113 (327)
T ss_pred ccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHHH--HCCC---eEEEEecCCCChhhcCCCceee
Confidence 333344556677777432 35899999999999999999875 2222 2345555544443332221100
Q ss_pred cCCCCC-CCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhc--------------cCCCcEEEEEccch
Q 043039 256 LDGYTP-DLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLIN--------------AHRGSKILVTTRKE 320 (949)
Q Consensus 256 l~~~~~-~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~--------------~~~gs~iivTtr~~ 320 (949)
+..... .......+... . .+.+.+++|.+....++....+...+.. .++.-++|-|....
T Consensus 114 l~~g~~~~~f~~GpL~~A----~-~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~ 188 (327)
T TIGR01650 114 LKDGKQITEFRDGILPWA----L-QHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTI 188 (327)
T ss_pred ccCCcceeEEecCcchhH----H-hCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCC
Confidence 000000 00000001111 1 2357788999865544444444333321 11345566665543
Q ss_pred hhH--------------hhhcCc-ceEeCCCCChHhHHHHHHHHh
Q 043039 321 TVA--------------RMIGST-CVISIEELSEPECWSLFKRFA 350 (949)
Q Consensus 321 ~v~--------------~~~~~~-~~~~l~~l~~~~~~~l~~~~~ 350 (949)
.-. ..+... -++.++.++.++=.+++..+.
T Consensus 189 g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 189 GLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred CcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhc
Confidence 210 011111 135688888888888887664
No 268
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.32 E-value=0.0086 Score=59.59 Aligned_cols=111 Identities=14% Similarity=0.226 Sum_probs=58.5
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHH-HHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCc
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVF-RVWKAIIENLDGYTPDLGELNTLHQLINNRIGGK 280 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 280 (949)
++|.|+|+.|.||||++..+... ........++. +.++.... .-...+..+-. -..+.....+.++..++..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E~~~~~~~~~i~q~~----vg~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIEFVHESKRSLINQRE----VGLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCccccccCccceeeecc----cCCCccCHHHHHHHHhcCC
Confidence 37899999999999999987664 22222233332 22221110 00001111100 0112233455677777767
Q ss_pred eEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccchhhHh
Q 043039 281 KVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKETVAR 324 (949)
Q Consensus 281 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 324 (949)
+=+|++|++.+. ..... .+.....|..++.|+....+..
T Consensus 75 pd~ii~gEird~--e~~~~---~l~~a~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 75 PDVILVGEMRDL--ETIRL---ALTAAETGHLVMSTLHTNSAAK 113 (198)
T ss_pred cCEEEEcCCCCH--HHHHH---HHHHHHcCCEEEEEecCCcHHH
Confidence 779999999543 22322 2222334666888877665543
No 269
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.32 E-value=0.022 Score=55.70 Aligned_cols=117 Identities=17% Similarity=0.086 Sum_probs=60.3
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcC--CCC------------CCCcchH
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLD--GYT------------PDLGELN 267 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~--~~~------------~~~~~~~ 267 (949)
.+++|.|..|.|||||++.+..... .....+++.-. ++......+-+.++ .+. ...-...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 4899999999999999999987522 11222332211 11111111111111 000 0000111
Q ss_pred H-HHHHHHhhhCCceEEEEEeCCCCC-CcccHHHHHHhhhccCCCcEEEEEccchhhHh
Q 043039 268 T-LHQLINNRIGGKKVLLVLDDVWTE-DGNKWESFQRCLINAHRGSKILVTTRKETVAR 324 (949)
Q Consensus 268 ~-~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 324 (949)
+ ..-.+.+.+-.++=++++|+.... |......+...+.....+..||++|.+.....
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 1 112344555566779999998542 33334445555544334677888888876654
No 270
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.32 E-value=0.031 Score=54.05 Aligned_cols=121 Identities=14% Similarity=0.210 Sum_probs=64.3
Q ss_pred EEEEEEecCCChHHHHHHHHHcCc---ccccc---c--ceEEEEEeCCCCCHHHHHHHHHHhcCCCCC--C--Cc--chH
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDA---DVSNN---F--NVMIWVCVSDPFDVFRVWKAIIENLDGYTP--D--LG--ELN 267 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~---~~~~~---f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~--~~--~~~ 267 (949)
.+++|+|+.|+|||||.+.+..+. .+.+. | ..+.|+. + .+.++.++.... + .. ...
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~--q--------~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID--Q--------LQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh--H--------HHHHHHcCCCccccCCCcCcCCHH
Confidence 489999999999999999886321 11111 1 0123321 1 345555553211 1 11 111
Q ss_pred H-HHHHHHhhhCCc--eEEEEEeCCCC-CCcccHHHHHHhhhcc-CCCcEEEEEccchhhHhhhcCcceEeC
Q 043039 268 T-LHQLINNRIGGK--KVLLVLDDVWT-EDGNKWESFQRCLINA-HRGSKILVTTRKETVARMIGSTCVISI 334 (949)
Q Consensus 268 ~-~~~~l~~~l~~~--~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~~~~~~~~~~l 334 (949)
+ ..-.+.+.+-.+ +=++++|+.-. -+......+...+... ..|..||++|.+...... .+.++.+
T Consensus 92 q~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 1 112234444455 66888898743 2333344455555432 246678889888766542 3445544
No 271
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.26 E-value=0.033 Score=54.06 Aligned_cols=117 Identities=21% Similarity=0.209 Sum_probs=61.3
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCC--CCHHHHHHHHHHhcC--CCCCCC---------cchHH
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDP--FDVFRVWKAIIENLD--GYTPDL---------GELNT 268 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~--~~~~~~---------~~~~~ 268 (949)
.+++|+|..|.|||||.+.+..-.. .....+++.-... ...... .+.+. ...... -...+
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHHH
Confidence 4899999999999999999987522 2233333321110 011111 11111 000000 00111
Q ss_pred H-HHHHHhhhCCceEEEEEeCCCCC-CcccHHHHHHhhhccCCCcEEEEEccchhhHhh
Q 043039 269 L-HQLINNRIGGKKVLLVLDDVWTE-DGNKWESFQRCLINAHRGSKILVTTRKETVARM 325 (949)
Q Consensus 269 ~-~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 325 (949)
. .-.+.+.+-.++-++++|+-... |......+...+.....+..||++|.+......
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 1 11244555567779999997532 333444555555444345678888888766543
No 272
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.027 Score=66.85 Aligned_cols=136 Identities=15% Similarity=0.204 Sum_probs=81.3
Q ss_pred CccccchhHHHHHHHHHccCCCC--CCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAE--QPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKA 251 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~--~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 251 (949)
..++|-++.+..|.+.+.....+ .+.....+.+.|+.|+|||.||+++... +-+..+..+-++.+. ...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~--~Fgse~~~IriDmse------~~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEY--VFGSEENFIRLDMSE------FQE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHH--HcCCccceEEechhh------hhh-
Confidence 45788888888888888655432 1225677889999999999999888764 333445555555553 222
Q ss_pred HHHhcCCCCCCCcchHHHHHHHHhhhCCceE-EEEEeCCCCCCcccHHHHHHhhhccC----------CCcEEEEEccch
Q 043039 252 IIENLDGYTPDLGELNTLHQLINNRIGGKKV-LLVLDDVWTEDGNKWESFQRCLINAH----------RGSKILVTTRKE 320 (949)
Q Consensus 252 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~~~~~~~~l~~~l~~~~----------~gs~iivTtr~~ 320 (949)
+.+-++.+ +.-.. .+....+-+.++.++| +|.||||+..+......+...+..+. -+-.|+|.|.+.
T Consensus 633 vskligsp-~gyvG-~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 633 VSKLIGSP-PGYVG-KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNV 710 (898)
T ss_pred hhhccCCC-ccccc-chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEeccc
Confidence 22222332 21111 1122245556666665 88899998877666665555554432 233466666553
No 273
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.23 E-value=0.03 Score=60.98 Aligned_cols=102 Identities=13% Similarity=0.095 Sum_probs=50.4
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCC-CCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDP-FDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIG 278 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 278 (949)
...++.++|++|+||||++.++.........+ .+..++.... ......++..++.++.+.....+...+...+. +
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~---~ 297 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLA---R 297 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHH---h
Confidence 35789999999999999998887642111122 2333443321 12233334444444443222222333333332 1
Q ss_pred CceEEEEEeCCC--CCCcccHHHHHHhhh
Q 043039 279 GKKVLLVLDDVW--TEDGNKWESFQRCLI 305 (949)
Q Consensus 279 ~~~~LlVlDdv~--~~~~~~~~~l~~~l~ 305 (949)
...=+||+|-.- ..+....+.+...+.
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~ 326 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYS 326 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHH
Confidence 233469999542 222344444544443
No 274
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.23 E-value=0.0032 Score=70.34 Aligned_cols=50 Identities=22% Similarity=0.228 Sum_probs=40.9
Q ss_pred ccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 175 EVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
+++|.++.+++|++.|.....+-...-+++.++|++|+||||||+.+.+-
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 58999999999999994433323345679999999999999999998873
No 275
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.20 E-value=0.084 Score=64.13 Aligned_cols=157 Identities=16% Similarity=0.180 Sum_probs=84.9
Q ss_pred CccccchhHHHHHHHHHccCCCC-------CCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAE-------QPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVF 246 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 246 (949)
.++.|.+..+++|.+.+...-.. +-...+-+.++|++|+|||++|+++.+.. ...| +.+..+
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~--~~~f---i~v~~~------ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES--GANF---IAVRGP------ 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--CCCE---EEEehH------
Confidence 45778888888777765421100 11233457889999999999999999862 2232 222211
Q ss_pred HHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCC------C--cc----cHHHHHHhhhc--cCCCcE
Q 043039 247 RVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTE------D--GN----KWESFQRCLIN--AHRGSK 312 (949)
Q Consensus 247 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------~--~~----~~~~l~~~l~~--~~~gs~ 312 (949)
+++....+. ....+...+...-...+.+|+||+++.- . .. ....+...+.. ...+.-
T Consensus 522 ----~l~~~~vGe-----se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 ----EILSKWVGE-----SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred ----HHhhcccCc-----HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 111111111 1112223333333466899999998531 0 00 11222223322 123444
Q ss_pred EEEEccchhhHhh-h----cCcceEeCCCCChHhHHHHHHHHh
Q 043039 313 ILVTTRKETVARM-I----GSTCVISIEELSEPECWSLFKRFA 350 (949)
Q Consensus 313 iivTtr~~~v~~~-~----~~~~~~~l~~l~~~~~~~l~~~~~ 350 (949)
||.||........ + .-+..+.+...+.++-.++|..+.
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~ 635 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHT 635 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHh
Confidence 5666665443321 1 124578888889999999997665
No 276
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.20 E-value=0.02 Score=53.73 Aligned_cols=22 Identities=41% Similarity=0.486 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
+|.++|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999863
No 277
>PRK13695 putative NTPase; Provisional
Probab=96.19 E-value=0.0083 Score=58.44 Aligned_cols=22 Identities=36% Similarity=0.409 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.++|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998765
No 278
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.19 E-value=0.017 Score=60.94 Aligned_cols=87 Identities=20% Similarity=0.163 Sum_probs=48.3
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccc-cccceEEEEEeCCCC-CHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhh
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVS-NNFNVMIWVCVSDPF-DVFRVWKAIIENLDGYTPDLGELNTLHQLINNRI 277 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 277 (949)
+.++++|+|+.|+||||++..+......+ +. ..+..|+..... ...+.+....+.++.......+...+...+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~-~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~- 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGN-KKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL- 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCC-CeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-
Confidence 45799999999999999998887643222 21 245566654321 223333344444443332233444454444433
Q ss_pred CCceEEEEEeCC
Q 043039 278 GGKKVLLVLDDV 289 (949)
Q Consensus 278 ~~~~~LlVlDdv 289 (949)
.+ .=+|++|..
T Consensus 271 ~~-~d~vliDt~ 281 (282)
T TIGR03499 271 RD-KDLILIDTA 281 (282)
T ss_pred cC-CCEEEEeCC
Confidence 33 347777764
No 279
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.19 E-value=0.014 Score=55.96 Aligned_cols=149 Identities=13% Similarity=0.184 Sum_probs=73.6
Q ss_pred EEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcc----hHHHHHHHHhhhCC
Q 043039 204 ISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGE----LNTLHQLINNRIGG 279 (949)
Q Consensus 204 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~----~~~~~~~l~~~l~~ 279 (949)
+.|.|.+|+|||++|.++... ....++++.-...++.. +.+.|.+..... +..+. ...+.+.+.+. +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R-~~~w~t~E~~~~l~~~l~~~-~- 72 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRR-PAHWRTIETPRDLVSALKEL-D- 72 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhC-CCCceEeecHHHHHHHHHhc-C-
Confidence 678999999999999988653 22356666666666542 333332221111 22222 22333333221 2
Q ss_pred ceEEEEEeCCCC-----C-Cccc-H-----HHHHHhhhc-cCCCcEEEEEccchhhHhhhcCcceEeCCCCChHhHHHHH
Q 043039 280 KKVLLVLDDVWT-----E-DGNK-W-----ESFQRCLIN-AHRGSKILVTTRKETVARMIGSTCVISIEELSEPECWSLF 346 (949)
Q Consensus 280 ~~~LlVlDdv~~-----~-~~~~-~-----~~l~~~l~~-~~~gs~iivTtr~~~v~~~~~~~~~~~l~~l~~~~~~~l~ 346 (949)
+.-.+++|.+-. . .... | ..+...+.. ...+..+|++|.. |. .+..+.+..-+.|
T Consensus 73 ~~~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~~~~~~viVsnE--vG----------~g~vp~~~~~r~f 140 (169)
T cd00544 73 PGDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNKPGTLILVSNE--VG----------LGVVPENALGRRF 140 (169)
T ss_pred CCCEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHcCCCcEEEEECC--cC----------CCCCCCCHHHHHH
Confidence 233799999711 0 0010 1 111112221 2245556777652 22 1234455566667
Q ss_pred HHHhhccCCCCCchhHHHHHHHHHHhcCCCch
Q 043039 347 KRFAFLNRSRSDCKQLEEIGRKITWKCKGLPL 378 (949)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 378 (949)
....+. -.+.+...++++.....|+|+
T Consensus 141 ~d~lG~-----lnq~la~~ad~v~~vv~Gip~ 167 (169)
T cd00544 141 RDELGR-----LNQRLAALADEVYLVVSGIPL 167 (169)
T ss_pred HHHHHH-----HHHHHHHHCCEEEEEECCcce
Confidence 666532 233444455555555568875
No 280
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.19 E-value=0.014 Score=62.25 Aligned_cols=58 Identities=19% Similarity=0.238 Sum_probs=41.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCccc----ccccceEEEEEeCCCCCHHHHHHHHHHhcCC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADV----SNNFNVMIWVCVSDPFDVFRVWKAIIENLDG 258 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 258 (949)
.-+++-|+|.+|+|||+|+.+++-.... .+.-..++||+....|+..++. +++++++.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~ 156 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGV 156 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCC
Confidence 4578999999999999999876532111 1122478999999988887764 45666654
No 281
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.17 E-value=0.046 Score=51.19 Aligned_cols=104 Identities=17% Similarity=0.210 Sum_probs=57.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCce
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKK 281 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 281 (949)
.+++|+|..|.|||||++.+..... .....+|+.-.. .+.-- .....-....-.+.+.+-.++
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~~-~~lS~G~~~rv~laral~~~p 89 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGYF-EQLSGGEKMRLALAKLLLENP 89 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEEE-ccCCHHHHHHHHHHHHHhcCC
Confidence 4899999999999999999987522 223333332100 00000 001111111223445555567
Q ss_pred EEEEEeCCCC-CCcccHHHHHHhhhccCCCcEEEEEccchhhHh
Q 043039 282 VLLVLDDVWT-EDGNKWESFQRCLINAHRGSKILVTTRKETVAR 324 (949)
Q Consensus 282 ~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 324 (949)
-++++|+.-. .|......+...+... +..||++|.+.+...
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 7999999743 2334455555555443 246888888765553
No 282
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.079 Score=62.14 Aligned_cols=154 Identities=21% Similarity=0.220 Sum_probs=85.6
Q ss_pred ccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCc---cccc--ccceEEEEEeCCCCCHHHHH
Q 043039 175 EVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDA---DVSN--NFNVMIWVCVSDPFDVFRVW 249 (949)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~---~~~~--~f~~~~wv~~~~~~~~~~~~ 249 (949)
.++||++|++++++.|..... ++. .++|.+|+|||++|.-++... .+-. ....++-.+
T Consensus 171 PvIGRd~EI~r~iqIL~RR~K--NNP----vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD----------- 233 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTK--NNP----VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD----------- 233 (786)
T ss_pred CCcChHHHHHHHHHHHhccCC--CCC----eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec-----------
Confidence 489999999999999986542 222 467999999999996655431 0100 111121111
Q ss_pred HHHHHhcCCCCCCCcchHHHHHHHHhhhC-CceEEEEEeCCCCC-------C--cccHHHHHHhhhccCCCcEEEEEccc
Q 043039 250 KAIIENLDGYTPDLGELNTLHQLINNRIG-GKKVLLVLDDVWTE-------D--GNKWESFQRCLINAHRGSKILVTTRK 319 (949)
Q Consensus 250 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~-------~--~~~~~~l~~~l~~~~~gs~iivTtr~ 319 (949)
|..-+.+ ..-..+.++....+.+.++ .++.++++|.+... . .+.-+-+...|..+. -..|=-||-+
T Consensus 234 --~g~LvAG-akyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe-L~~IGATT~~ 309 (786)
T COG0542 234 --LGSLVAG-AKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE-LRCIGATTLD 309 (786)
T ss_pred --HHHHhcc-ccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC-eEEEEeccHH
Confidence 1111111 1223455555555555554 44899999998642 0 112222333333322 2234445543
Q ss_pred hhhHhhh-------cCcceEeCCCCChHhHHHHHHHHh
Q 043039 320 ETVARMI-------GSTCVISIEELSEPECWSLFKRFA 350 (949)
Q Consensus 320 ~~v~~~~-------~~~~~~~l~~l~~~~~~~l~~~~~ 350 (949)
+--..+ ...+.+.+...+.+++..++....
T Consensus 310 -EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 310 -EYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred -HHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 222111 225689999999999999887654
No 283
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.12 E-value=0.014 Score=57.98 Aligned_cols=105 Identities=19% Similarity=0.208 Sum_probs=51.3
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhh----
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRI---- 277 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l---- 277 (949)
++..|.|.+|+||||+++.+.......+ ..++++. .+..-... +.+..+.. ... +...+....
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g--~~v~~~a-pT~~Aa~~----L~~~~~~~---a~T---i~~~l~~~~~~~~ 85 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAG--KRVIGLA-PTNKAAKE----LREKTGIE---AQT---IHSFLYRIPNGDD 85 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT----EEEEE-SSHHHHHH----HHHHHTS----EEE---HHHHTTEECCEEC
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCC--CeEEEEC-CcHHHHHH----HHHhhCcc---hhh---HHHHHhcCCcccc
Confidence 4788999999999999988876422222 2233333 22222222 22222211 001 111111110
Q ss_pred -----CCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccchh
Q 043039 278 -----GGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKET 321 (949)
Q Consensus 278 -----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 321 (949)
..++-+||+|++...+...+..+...... .|+|+|+.--..+
T Consensus 86 ~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 86 EGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp CSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred cccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 12234999999976655555555544433 4788888765443
No 284
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.12 E-value=0.052 Score=58.19 Aligned_cols=91 Identities=15% Similarity=0.075 Sum_probs=56.2
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCC-CHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhh
Q 043039 199 NAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPF-DVFRVWKAIIENLDGYTPDLGELNTLHQLINNRI 277 (949)
Q Consensus 199 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 277 (949)
.+.++++++|+.|+||||++..+......+ -..+.+|++.... ...+-++..++.++.+.....+...+...+...-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 356899999999999999998887642222 2356677765432 2345566666666544333345555555554332
Q ss_pred C-CceEEEEEeCCCC
Q 043039 278 G-GKKVLLVLDDVWT 291 (949)
Q Consensus 278 ~-~~~~LlVlDdv~~ 291 (949)
. +..=+|++|-...
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 1 3345889999854
No 285
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.08 E-value=0.043 Score=59.99 Aligned_cols=106 Identities=14% Similarity=0.116 Sum_probs=60.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccc--cccceEEEEEeCCC-CCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhh
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVS--NNFNVMIWVCVSDP-FDVFRVWKAIIENLDGYTPDLGELNTLHQLINNR 276 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 276 (949)
..++|.++|+.|+||||.+.++....... .+-..+..+++... .....-++..++.++.+.......+.+...+.+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 45799999999999999998877542221 12234555665542 1223335555666655433333445555545443
Q ss_pred hCCceEEEEEeCCCCCCc--ccHHHHHHhhhcc
Q 043039 277 IGGKKVLLVLDDVWTEDG--NKWESFQRCLINA 307 (949)
Q Consensus 277 l~~~~~LlVlDdv~~~~~--~~~~~l~~~l~~~ 307 (949)
...-+|++|.+..... ....++...+...
T Consensus 253 --~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~ 283 (388)
T PRK12723 253 --KDFDLVLVDTIGKSPKDFMKLAEMKELLNAC 283 (388)
T ss_pred --CCCCEEEEcCCCCCccCHHHHHHHHHHHHhc
Confidence 3456899999954321 1234555555443
No 286
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.06 E-value=0.053 Score=60.52 Aligned_cols=103 Identities=14% Similarity=0.082 Sum_probs=54.2
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCC-HHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFD-VFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGG 279 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 279 (949)
.+++.++|++|+||||++..+............+..|+....-. ..+.+....+.++.+.....+...+...+.+ +.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~~ 299 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LRD 299 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hCC
Confidence 46999999999999999877765322012223566676544211 2223333344444333222333444444443 233
Q ss_pred ceEEEEEeCCCCC--CcccHHHHHHhhh
Q 043039 280 KKVLLVLDDVWTE--DGNKWESFQRCLI 305 (949)
Q Consensus 280 ~~~LlVlDdv~~~--~~~~~~~l~~~l~ 305 (949)
.=+||+|..... +......+...+.
T Consensus 300 -~DlVlIDt~G~~~~d~~~~~~L~~ll~ 326 (424)
T PRK05703 300 -CDVILIDTAGRSQRDKRLIEELKALIE 326 (424)
T ss_pred -CCEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 458999976432 2223344555544
No 287
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.06 E-value=0.018 Score=56.92 Aligned_cols=89 Identities=17% Similarity=0.123 Sum_probs=51.9
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCC-CCCHHHHHHHHHHhcCCCC---CCCcchHHH-HHHHHh
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSD-PFDVFRVWKAIIENLDGYT---PDLGELNTL-HQLINN 275 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~---~~~~~~~~~-~~~l~~ 275 (949)
++|+.++|+.|+||||.+.+++.....+ -..+..++... .....+-++..++.++.+. ....+.... .+.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 3699999999999999887776543322 34567777653 3455666777788877542 122233333 333333
Q ss_pred hhCCceEEEEEeCCCC
Q 043039 276 RIGGKKVLLVLDDVWT 291 (949)
Q Consensus 276 ~l~~~~~LlVlDdv~~ 291 (949)
.-.++.=+|++|=...
T Consensus 79 ~~~~~~D~vlIDT~Gr 94 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAGR 94 (196)
T ss_dssp HHHTTSSEEEEEE-SS
T ss_pred HhhcCCCEEEEecCCc
Confidence 3222233888888743
No 288
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.05 E-value=0.032 Score=53.57 Aligned_cols=116 Identities=16% Similarity=0.106 Sum_probs=61.5
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCC--CCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDP--FDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGG 279 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 279 (949)
.+++|.|..|.|||||.+.+.... ......+++.-..- .+..+..+ ..++-. .+...-....-.+.+.+-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~-~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMV-YQLSVGERQMVEIARALAR 99 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEE-EecCHHHHHHHHHHHHHhc
Confidence 489999999999999999998752 23344444432111 11111111 111100 0011111122234455556
Q ss_pred ceEEEEEeCCCC-CCcccHHHHHHhhhcc-CCCcEEEEEccchhhHh
Q 043039 280 KKVLLVLDDVWT-EDGNKWESFQRCLINA-HRGSKILVTTRKETVAR 324 (949)
Q Consensus 280 ~~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~ 324 (949)
++-++++|+.-. .|......+...+... .+|..||++|.+.....
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 677899999743 2333444455555432 34667888888866443
No 289
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.01 E-value=0.1 Score=60.91 Aligned_cols=134 Identities=12% Similarity=0.089 Sum_probs=75.4
Q ss_pred ccCccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHH
Q 043039 172 NVSEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKA 251 (949)
Q Consensus 172 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 251 (949)
....++|....+.++.+.+..... ....|.|+|..|+|||++|+.+++.... .-...+.|++..-.+ ..+.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s~r--~~~pfv~i~c~~~~~--~~~~- 264 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLSPR--AKRPFVKVNCAALSE--TLLE- 264 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhCCC--CCCCeEEeecCCCCH--HHHH-
Confidence 345699999999999888764432 2235789999999999999999875321 112344555554322 2111
Q ss_pred HHHhcCCCCCCC-cc-hHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccC-----------CCcEEEEEcc
Q 043039 252 IIENLDGYTPDL-GE-LNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAH-----------RGSKILVTTR 318 (949)
Q Consensus 252 i~~~l~~~~~~~-~~-~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 318 (949)
..+.+..... .. .......+. ....-.|+||++..........+...+..+. ...|||.||.
T Consensus 265 --~~lfg~~~~~~~~~~~~~~g~~~---~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~ 339 (534)
T TIGR01817 265 --SELFGHEKGAFTGAIAQRKGRFE---LADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATN 339 (534)
T ss_pred --HHHcCCCCCccCCCCcCCCCccc---ccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCC
Confidence 1221211100 00 000000011 1123468899998877667777777775432 1258888875
Q ss_pred c
Q 043039 319 K 319 (949)
Q Consensus 319 ~ 319 (949)
.
T Consensus 340 ~ 340 (534)
T TIGR01817 340 R 340 (534)
T ss_pred C
Confidence 4
No 290
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.1 Score=60.79 Aligned_cols=182 Identities=17% Similarity=0.156 Sum_probs=100.7
Q ss_pred Cccccchh---HHHHHHHHHccCCCC---CCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 043039 174 SEVCGRNE---EKNALKGKLLSETAE---QPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFR 247 (949)
Q Consensus 174 ~~~~Gr~~---~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 247 (949)
.++.|-++ |+++++++|..+..- +..-++=+.++|++|+|||-||++++....+ =|++++.
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-------PF~svSG------ 377 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSVSG------ 377 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC-------ceeeech------
Confidence 45778765 566666667554321 1234466889999999999999999997443 2334443
Q ss_pred HHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCC---------------cccHHHHHHhhhccCCCc-
Q 043039 248 VWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTED---------------GNKWESFQRCLINAHRGS- 311 (949)
Q Consensus 248 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---------------~~~~~~l~~~l~~~~~gs- 311 (949)
.++++.+.+.. ...... .....=...+.+|.+|+++... ....+++..-+......+
T Consensus 378 --SEFvE~~~g~~--asrvr~---lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 378 --SEFVEMFVGVG--ASRVRD---LFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred --HHHHHHhcccc--hHHHHH---HHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 12233332211 111122 2222223678899999884311 011222322222222222
Q ss_pred EEEE-EccchhhHhh--h--c-CcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchH
Q 043039 312 KILV-TTRKETVARM--I--G-STCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLA 379 (949)
Q Consensus 312 ~iiv-Ttr~~~v~~~--~--~-~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 379 (949)
.|++ +|+..++... + + -+..+.++.-+.....++|..++-.-. ...+..++++ |+....|.+=|
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~---~~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKK---LDDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccC---CCcchhhHHH-HHhcCCCCcHH
Confidence 2333 4544444322 1 2 256888888888999999998874322 2234556666 88888888733
No 291
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.01 E-value=0.0056 Score=58.92 Aligned_cols=42 Identities=24% Similarity=0.231 Sum_probs=30.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccc-cccceEEEEEeCCCCC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVS-NNFNVMIWVCVSDPFD 244 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~ 244 (949)
..++.+.|+.|+|||.||+.+... .. +.....+-++++.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~--l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAEL--LFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHH--HT-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHH--hccCCccchHHHhhhcccc
Confidence 468899999999999999998875 22 3445566666665333
No 292
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.00 E-value=0.058 Score=60.01 Aligned_cols=89 Identities=18% Similarity=0.093 Sum_probs=49.7
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCC-CCHHHHHHHHHHhcCCCCC---CCcchHHHHHHHH
Q 043039 199 NAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDP-FDVFRVWKAIIENLDGYTP---DLGELNTLHQLIN 274 (949)
Q Consensus 199 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~ 274 (949)
..+.+|.++|.+|+||||.|..++...... .+ .+.-|++... ....+.++.++.+++.+.. ...+.........
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKK-GL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHc-CC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 357899999999999999998887653222 22 3444544331 2234556666666654321 1123223222222
Q ss_pred hhhCCceEEEEEeCCC
Q 043039 275 NRIGGKKVLLVLDDVW 290 (949)
Q Consensus 275 ~~l~~~~~LlVlDdv~ 290 (949)
+.+.+. -+||+|..-
T Consensus 171 ~~~~~~-DvVIIDTAG 185 (437)
T PRK00771 171 EKFKKA-DVIIVDTAG 185 (437)
T ss_pred HHhhcC-CEEEEECCC
Confidence 333333 468888873
No 293
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.99 E-value=0.061 Score=54.47 Aligned_cols=124 Identities=19% Similarity=0.153 Sum_probs=74.5
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCC-----CCCHHHHHHHHHHhcCCCC------CCCcchHHHH
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSD-----PFDVFRVWKAIIENLDGYT------PDLGELNTLH 270 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~ 270 (949)
.+++|+|..|.||||+++.+..= ...-.+.+++...+ .....+...++++.++... +..-.-.+.+
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L---~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGL---EEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcC---cCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 48999999999999999999873 23333334433222 2234445666677666432 1111222222
Q ss_pred H-HHHhhhCCceEEEEEeCCCCC-CcccHHHHHHhhhc--cCCCcEEEEEccchhhHhhhcC
Q 043039 271 Q-LINNRIGGKKVLLVLDDVWTE-DGNKWESFQRCLIN--AHRGSKILVTTRKETVARMIGS 328 (949)
Q Consensus 271 ~-~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~iivTtr~~~v~~~~~~ 328 (949)
+ .+.+.|.-++-++|.|..-+. |.+...++...+.. ...|-..+..|.+-.+...+..
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 2 355777888999999997443 22333445444433 2346678888888877776543
No 294
>PRK06696 uridine kinase; Validated
Probab=95.96 E-value=0.0086 Score=60.96 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=35.5
Q ss_pred cchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 178 GRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 178 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.|++.+++|.+.+.... .....+|+|.|.+|+||||+|+.+...
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 46777888888886532 346789999999999999999999875
No 295
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.95 E-value=0.07 Score=51.68 Aligned_cols=102 Identities=18% Similarity=0.091 Sum_probs=55.5
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEE------eCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHh
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVC------VSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINN 275 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~------~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 275 (949)
.+++|+|..|.|||||++.+..-.. .....+++. +.+... ...-....-.+.+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~lar 84 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIAA 84 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHHH
Confidence 4899999999999999999987421 222222221 111111 1111112223445
Q ss_pred hhCCceEEEEEeCCCCC-CcccHHHHHHhhhcc-CC-CcEEEEEccchhhHh
Q 043039 276 RIGGKKVLLVLDDVWTE-DGNKWESFQRCLINA-HR-GSKILVTTRKETVAR 324 (949)
Q Consensus 276 ~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~-gs~iivTtr~~~v~~ 324 (949)
.+-.++-++++|+--.. |......+...+... .. +..||++|.+.....
T Consensus 85 al~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 85 ALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 55566779999997432 223333444444332 22 256888888765544
No 296
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.95 E-value=0.03 Score=62.64 Aligned_cols=90 Identities=18% Similarity=0.114 Sum_probs=48.2
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCC-CCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDP-FDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIG 278 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 278 (949)
...+|+|+|++|+||||++.++......+.....+..++.... ....+.+....+.++.......+...+...+.+ +.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~-l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER-LR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-hc
Confidence 3479999999999999999887653212211234555554321 112233333333343322222333444444443 33
Q ss_pred CceEEEEEeCCCC
Q 043039 279 GKKVLLVLDDVWT 291 (949)
Q Consensus 279 ~~~~LlVlDdv~~ 291 (949)
+ .=+||+|..-.
T Consensus 428 ~-~DLVLIDTaG~ 439 (559)
T PRK12727 428 D-YKLVLIDTAGM 439 (559)
T ss_pred c-CCEEEecCCCc
Confidence 3 44888998843
No 297
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.95 E-value=0.049 Score=58.46 Aligned_cols=105 Identities=20% Similarity=0.177 Sum_probs=60.9
Q ss_pred CeEEEEEEecCCChHH-HHHHHHHcCcccccccceEEEEEeCCC-CCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhh
Q 043039 200 AIQVISLVGMGGIGKT-TLAQLAYNDADVSNNFNVMIWVCVSDP-FDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRI 277 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKT-tLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 277 (949)
+.++|.++|+.|+||| |||+..+.-.... .=..+..|+.... -...+-++.-++-++.+.....+..++...+...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~-~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l- 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLK-KKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL- 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhc-cCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-
Confidence 3689999999999998 5665555432112 2234666665442 3344555555666666554445555555554432
Q ss_pred CCceEEEEEeCCCCC--CcccHHHHHHhhhcc
Q 043039 278 GGKKVLLVLDDVWTE--DGNKWESFQRCLINA 307 (949)
Q Consensus 278 ~~~~~LlVlDdv~~~--~~~~~~~l~~~l~~~ 307 (949)
++. =+|.+|-+... +....+++..++...
T Consensus 280 ~~~-d~ILVDTaGrs~~D~~~i~el~~~~~~~ 310 (407)
T COG1419 280 RDC-DVILVDTAGRSQYDKEKIEELKELIDVS 310 (407)
T ss_pred hcC-CEEEEeCCCCCccCHHHHHHHHHHHhcc
Confidence 333 36777887543 334455666666555
No 298
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.94 E-value=0.081 Score=54.54 Aligned_cols=142 Identities=19% Similarity=0.276 Sum_probs=73.0
Q ss_pred EEEEEecCCChHHHHHHHHHcCccc----cc------ccceEEEEEeCCCC-CHHHHHHHHHHhcCCCCCC---------
Q 043039 203 VISLVGMGGIGKTTLAQLAYNDADV----SN------NFNVMIWVCVSDPF-DVFRVWKAIIENLDGYTPD--------- 262 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~~~~----~~------~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~--------- 262 (949)
+-.|+|++|+|||+||..+.-..-. -+ .=..+++++...+. .+.+-+..+...++.....
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 5678999999999999877643110 00 11246667766544 3455555565544211000
Q ss_pred -------C---cchHHHHHHHHhhh-CCceEEEEEeCCCC------CCcccHHHHHHhhhc--cCCCcEEEEEccchhhH
Q 043039 263 -------L---GELNTLHQLINNRI-GGKKVLLVLDDVWT------EDGNKWESFQRCLIN--AHRGSKILVTTRKETVA 323 (949)
Q Consensus 263 -------~---~~~~~~~~~l~~~l-~~~~~LlVlDdv~~------~~~~~~~~l~~~l~~--~~~gs~iivTtr~~~v~ 323 (949)
. .......+.+.+.+ ..+.-+||+|-+-. .+......+...+.. ...|+.||+++....-.
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~ 162 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGS 162 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCccc
Confidence 0 00112223333322 34567999997621 222334444444432 23467788877754221
Q ss_pred h-------------h-h-cCcceEeCCCCChHhHHH
Q 043039 324 R-------------M-I-GSTCVISIEELSEPECWS 344 (949)
Q Consensus 324 ~-------------~-~-~~~~~~~l~~l~~~~~~~ 344 (949)
. . . .....+.+.+++.+++.+
T Consensus 163 ~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~ 198 (239)
T cd01125 163 AKDGDTQEAARGASALVDGARWVRALTRMTSEEAEK 198 (239)
T ss_pred ccCcccccccCcHHHHhcccceEEEEeeCCHHHHHh
Confidence 1 0 0 113466677777777655
No 299
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.94 E-value=0.091 Score=50.59 Aligned_cols=118 Identities=12% Similarity=0.121 Sum_probs=59.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcCccc-ccc--cc---eEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHh
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADV-SNN--FN---VMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINN 275 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~--f~---~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 275 (949)
.+++|+|..|.|||||++.+...... .+. ++ .+.++.-........+...+.-. .......-....-.+.+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~lar 104 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAFAR 104 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHHHH
Confidence 48999999999999999999875221 111 11 12222211111111222222110 11111111122223445
Q ss_pred hhCCceEEEEEeCCCC-CCcccHHHHHHhhhccCCCcEEEEEccchhhHh
Q 043039 276 RIGGKKVLLVLDDVWT-EDGNKWESFQRCLINAHRGSKILVTTRKETVAR 324 (949)
Q Consensus 276 ~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 324 (949)
.+-.++=++++|+--. .|......+...+... +..||++|.+.....
T Consensus 105 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 105 LLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 5556677889998743 2223344444444443 356888888766543
No 300
>PRK14974 cell division protein FtsY; Provisional
Probab=95.92 E-value=0.059 Score=57.78 Aligned_cols=113 Identities=18% Similarity=0.139 Sum_probs=57.7
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCC-CCHHHHHHHHHHhcCCCCC---CCcchHH-HHHHHH
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDP-FDVFRVWKAIIENLDGYTP---DLGELNT-LHQLIN 274 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~-~~~~l~ 274 (949)
+..+|.++|++|+||||++..+...... ..+ .++.+..... ....+-++..+..++.... ...+... +.+.+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~-~g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK-NGF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 4689999999999999988777654221 123 3444443211 2233445556666654321 1122222 223333
Q ss_pred hhh-CCceEEEEEeCCCCC--CcccHHHHHHhhhccCCCcEEEE
Q 043039 275 NRI-GGKKVLLVLDDVWTE--DGNKWESFQRCLINAHRGSKILV 315 (949)
Q Consensus 275 ~~l-~~~~~LlVlDdv~~~--~~~~~~~l~~~l~~~~~gs~iiv 315 (949)
..- ++.. +|++|-+... +...+.++........+...++|
T Consensus 217 ~~~~~~~D-vVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLV 259 (336)
T PRK14974 217 HAKARGID-VVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFV 259 (336)
T ss_pred HHHhCCCC-EEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEe
Confidence 221 2333 9999998553 22334455444333333334444
No 301
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.91 E-value=0.056 Score=58.57 Aligned_cols=89 Identities=13% Similarity=0.116 Sum_probs=51.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCC-CCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSD-PFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGG 279 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 279 (949)
.++++++|+.|+||||++.++......+.....+..++... .....+-++...+.++.+.....+...+...+. .+.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~l~~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-ELRN 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-HhcC
Confidence 46999999999999999988876422111123455665433 233455556666666654332222223333333 3345
Q ss_pred ceEEEEEeCCCC
Q 043039 280 KKVLLVLDDVWT 291 (949)
Q Consensus 280 ~~~LlVlDdv~~ 291 (949)
+ -+|++|....
T Consensus 216 ~-DlVLIDTaG~ 226 (374)
T PRK14722 216 K-HMVLIDTIGM 226 (374)
T ss_pred C-CEEEEcCCCC
Confidence 4 4566999854
No 302
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.90 E-value=0.036 Score=56.98 Aligned_cols=87 Identities=18% Similarity=0.176 Sum_probs=53.2
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCC-----------------
Q 043039 199 NAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTP----------------- 261 (949)
Q Consensus 199 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------------- 261 (949)
..-+++.|+|.+|+|||++|.++.... . ..-..++|++.+.. ..++.+++ ++++....
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~-~-~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA-L-KQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH-H-hCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 345799999999999999999885431 1 23456888888653 44555543 22321110
Q ss_pred ---CCcchHHHHHHHHhhhCC-ceEEEEEeCCC
Q 043039 262 ---DLGELNTLHQLINNRIGG-KKVLLVLDDVW 290 (949)
Q Consensus 262 ---~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 290 (949)
...+.+.+...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 012234555556555543 55589999974
No 303
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.075 Score=59.96 Aligned_cols=173 Identities=18% Similarity=0.180 Sum_probs=87.1
Q ss_pred CccccchhHHHHHHHHHccCCCC-------CCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAE-------QPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVF 246 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 246 (949)
+++=|-|+...+|......+-.. +-...+-|..+|++|.|||++|+++.+.. ...| +.++.
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~--~~nF-----lsvkg----- 501 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA--GMNF-----LSVKG----- 501 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh--cCCe-----eeccC-----
Confidence 34445666666666544332211 12356778899999999999999999963 3344 22221
Q ss_pred HHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCC-------CcccHHHHHHhh----hccCCCcEEEE
Q 043039 247 RVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTE-------DGNKWESFQRCL----INAHRGSKILV 315 (949)
Q Consensus 247 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------~~~~~~~l~~~l----~~~~~gs~iiv 315 (949)
-+++....+. ....+.+...+.=+-.+.+|.||.++.- ....-+.+...+ ........|+|
T Consensus 502 ---pEL~sk~vGe-----SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~V 573 (693)
T KOG0730|consen 502 ---PELFSKYVGE-----SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLV 573 (693)
T ss_pred ---HHHHHHhcCc-----hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEE
Confidence 1112222111 1112222222222345689999988531 111122222322 22222223433
Q ss_pred ---EccchhhHhhh-c---CcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHH
Q 043039 316 ---TTRKETVARMI-G---STCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGR 367 (949)
Q Consensus 316 ---Ttr~~~v~~~~-~---~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 367 (949)
|-|...+-..+ . -+..+.++.-+.+...++|+.++-.... .+.-++.++++
T Consensus 574 iAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~-~~~vdl~~La~ 631 (693)
T KOG0730|consen 574 IAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPF-SEDVDLEELAQ 631 (693)
T ss_pred EeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCC-CccccHHHHHH
Confidence 22333322222 2 2567777777788889999998854332 23345555544
No 304
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.90 E-value=0.04 Score=58.94 Aligned_cols=58 Identities=17% Similarity=0.142 Sum_probs=40.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCccc---cc-ccceEEEEEeCCCCCHHHHHHHHHHhcCC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADV---SN-NFNVMIWVCVSDPFDVFRVWKAIIENLDG 258 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 258 (949)
...++.|+|.+|+|||||+..++..... .+ .-..++|++....++..+ +.++++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCC
Confidence 4679999999999999999887642111 11 223679999988888776 4445555543
No 305
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.89 E-value=0.38 Score=50.80 Aligned_cols=129 Identities=11% Similarity=0.101 Sum_probs=79.8
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCc--------ccccccceEEEEEe-CCCCCHHHHHHHHHHhcCCCCCCCcchHHHH
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDA--------DVSNNFNVMIWVCV-SDPFDVFRVWKAIIENLDGYTPDLGELNTLH 270 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~--------~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 270 (949)
-.++..++|..|+||+++|..+.+.. ....|-+.+.++.. +.... .+++.
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~---------------------vd~Ir 75 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLS---------------------KSEFL 75 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCC---------------------HHHHH
Confidence 35678899999999999998875531 01111112233221 11111 22222
Q ss_pred HHHHhh----h-CCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccc-hhhHhhh-cCcceEeCCCCChHhHH
Q 043039 271 QLINNR----I-GGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRK-ETVARMI-GSTCVISIEELSEPECW 343 (949)
Q Consensus 271 ~~l~~~----l-~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~-~~~~~~~l~~l~~~~~~ 343 (949)
+.+.+. . .+++=++|+|++........+.+...+..-...+.+|++|.+ ..+...+ .....+++.++++++..
T Consensus 76 ~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~ 155 (299)
T PRK07132 76 SAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKIL 155 (299)
T ss_pred HHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHH
Confidence 222211 1 146678999999777666777888888777777877776644 4444433 34678999999999998
Q ss_pred HHHHHH
Q 043039 344 SLFKRF 349 (949)
Q Consensus 344 ~l~~~~ 349 (949)
+.+...
T Consensus 156 ~~l~~~ 161 (299)
T PRK07132 156 AKLLSK 161 (299)
T ss_pred HHHHHc
Confidence 877653
No 306
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.89 E-value=0.0008 Score=66.71 Aligned_cols=99 Identities=22% Similarity=0.226 Sum_probs=54.6
Q ss_pred CCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccc--hhhcCCCCCcE
Q 043039 563 AKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELP--ETFCELFNLQN 640 (949)
Q Consensus 563 ~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp--~~l~~L~~L~~ 640 (949)
+.+.+.|++.||.+..+.- +..++.|.+|.|+-|. |..+. .+..+..|+.|.|+.|.|..+- .-+.+|++|++
T Consensus 18 l~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNk---IssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNK---ISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHHHH-HHhcccceeEEeeccc---cccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 3455556666666655443 4566666666666666 54442 2556666666666666665542 34556666666
Q ss_pred EeecCCCCCCcccc-----ccccCCCCCeee
Q 043039 641 LDLRRCSKFKRLPQ-----NIGKLVNLRHLI 666 (949)
Q Consensus 641 L~L~~~~~l~~lp~-----~i~~L~~L~~L~ 666 (949)
|-|..|+-...-+. -+..|++|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 66665553333221 133455555554
No 307
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.88 E-value=0.02 Score=60.56 Aligned_cols=84 Identities=18% Similarity=0.181 Sum_probs=53.4
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCC-----CCCcchHHHHHHHH
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYT-----PDLGELNTLHQLIN 274 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 274 (949)
.-+++-|+|++|+||||||.++... ....-..++|++....++.. .+++++... ......++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 4579999999999999999887654 22234567899887766553 244443321 11123444455555
Q ss_pred hhhC-CceEEEEEeCCC
Q 043039 275 NRIG-GKKVLLVLDDVW 290 (949)
Q Consensus 275 ~~l~-~~~~LlVlDdv~ 290 (949)
..++ +..-+||+|.+-
T Consensus 127 ~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHhhccCCcEEEEcchh
Confidence 4443 456699999983
No 308
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.86 E-value=0.075 Score=59.56 Aligned_cols=129 Identities=24% Similarity=0.304 Sum_probs=69.8
Q ss_pred EEEEEEecCCChHHH-HHHHHHcCcccccccceEEEEEeCCCCCHH--HHHHHHHHhcCCCCCC----------C-----
Q 043039 202 QVISLVGMGGIGKTT-LAQLAYNDADVSNNFNVMIWVCVSDPFDVF--RVWKAIIENLDGYTPD----------L----- 263 (949)
Q Consensus 202 ~vi~I~G~~GiGKTt-La~~v~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~~~----------~----- 263 (949)
+||.|+|..|.|||| |++.+|.+ -|..---|.+.++-.+. .+-+.+.+.++....+ .
T Consensus 372 ~vvvivgETGSGKTTQl~QyL~ed-----GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~T 446 (1042)
T KOG0924|consen 372 QVVVIVGETGSGKTTQLAQYLYED-----GYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDT 446 (1042)
T ss_pred cEEEEEecCCCCchhhhHHHHHhc-----ccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCce
Confidence 599999999999986 66777775 22212244555655443 3445555555432111 0
Q ss_pred -----cchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhh---hccCCCcEEEEEccchh---hHhhhcCcceE
Q 043039 264 -----GELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCL---INAHRGSKILVTTRKET---VARMIGSTCVI 332 (949)
Q Consensus 264 -----~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l---~~~~~gs~iivTtr~~~---v~~~~~~~~~~ 332 (949)
.|---+.+.+....-+|--.||+|.+.+.. ..-+-+...+ ......-|+||||-.-+ .++..+....+
T Consensus 447 ~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERs-lNtDilfGllk~~larRrdlKliVtSATm~a~kf~nfFgn~p~f 525 (1042)
T KOG0924|consen 447 KIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERS-LNTDILFGLLKKVLARRRDLKLIVTSATMDAQKFSNFFGNCPQF 525 (1042)
T ss_pred eEEEeccchHHHHHhhhhhhhheeEEEechhhhcc-cchHHHHHHHHHHHHhhccceEEEeeccccHHHHHHHhCCCcee
Confidence 122223333444334556699999996642 2222222222 23345679999998643 34444544444
Q ss_pred eCCC
Q 043039 333 SIEE 336 (949)
Q Consensus 333 ~l~~ 336 (949)
.+.+
T Consensus 526 ~IpG 529 (1042)
T KOG0924|consen 526 TIPG 529 (1042)
T ss_pred eecC
Confidence 4443
No 309
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.86 E-value=0.036 Score=59.59 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=41.7
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCccc---c-cccceEEEEEeCCCCCHHHHHHHHHHhcCC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADV---S-NNFNVMIWVCVSDPFDVFRVWKAIIENLDG 258 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 258 (949)
...++-|+|.+|+|||++|..++-.... . +.-..++|++....|+..++ .++++.++.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 4578999999999999999877643111 1 11236999999999988775 556666653
No 310
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.84 E-value=0.029 Score=57.78 Aligned_cols=86 Identities=19% Similarity=0.219 Sum_probs=52.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcCccccccc-ceEEEEEeCCC-CCHHHHHHHHHHhcCCC-------CCCCcchH-----
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNF-NVMIWVCVSDP-FDVFRVWKAIIENLDGY-------TPDLGELN----- 267 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 267 (949)
+.++|.|.+|+|||||++.+++. ++.+| +.++++.+.+. ..+.++..++...-... ..+.....
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 46899999999999999999986 33344 45666666554 45566666665431110 11111111
Q ss_pred HHHHHHHhhh--C-CceEEEEEeCC
Q 043039 268 TLHQLINNRI--G-GKKVLLVLDDV 289 (949)
Q Consensus 268 ~~~~~l~~~l--~-~~~~LlVlDdv 289 (949)
...-.+.+++ + ++.+|+++||+
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1112244555 3 88999999998
No 311
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.088 Score=58.64 Aligned_cols=155 Identities=22% Similarity=0.331 Sum_probs=86.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCc
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGK 280 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 280 (949)
+.-|.+||++|.|||-||++|.|+. +..| +++..+ +++...-+. ....+.+.+.+.=...
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEa--g~NF-----isVKGP--------ELlNkYVGE-----SErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEA--GANF-----ISVKGP--------ELLNKYVGE-----SERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhc--cCce-----EeecCH--------HHHHHHhhh-----HHHHHHHHHHHhhcCC
Confidence 4557899999999999999999973 3344 334331 112111111 1222333344443467
Q ss_pred eEEEEEeCCCCC-----CcccH------HHHHHhhhc--cCCCcEEEEEccchhhHhh-h---cC-cceEeCCCCChHhH
Q 043039 281 KVLLVLDDVWTE-----DGNKW------ESFQRCLIN--AHRGSKILVTTRKETVARM-I---GS-TCVISIEELSEPEC 342 (949)
Q Consensus 281 ~~LlVlDdv~~~-----~~~~~------~~l~~~l~~--~~~gs~iivTtr~~~v~~~-~---~~-~~~~~l~~l~~~~~ 342 (949)
+++|.||.++.. +...| +++..-+.. ...|.-||-.|..+++... + +. +...-++.-..+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 999999999531 11112 222222222 2356666666665555432 1 11 45667777788888
Q ss_pred HHHHHHHhhccCCC-CCchhHHHHHHHHHHhcCCCc
Q 043039 343 WSLFKRFAFLNRSR-SDCKQLEEIGRKITWKCKGLP 377 (949)
Q Consensus 343 ~~l~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P 377 (949)
..+++...-....+ ..+-++.++|.. .+|.|..
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 89988877432222 344567777664 3555544
No 312
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.79 E-value=0.031 Score=60.37 Aligned_cols=133 Identities=11% Similarity=0.023 Sum_probs=73.9
Q ss_pred ccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHH
Q 043039 175 EVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIE 254 (949)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 254 (949)
.++|+...+.++.+.+..... .-.-|.|+|..|+||+++|+.++..... .-...+.|++..-. ...+...+..
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s~r--~~~pfv~v~c~~~~-~~~~~~~lfg 79 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLSSR--WQGPFISLNCAALN-ENLLDSELFG 79 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhCCc--cCCCeEEEeCCCCC-HHHHHHHHcc
Confidence 489999998888888765432 2235789999999999999999864211 11234455665432 1222222221
Q ss_pred hcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccC-----------CCcEEEEEccc
Q 043039 255 NLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAH-----------RGSKILVTTRK 319 (949)
Q Consensus 255 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 319 (949)
.-......... .....+.. ...=.|+||||..........+...+..+. ...|||.||..
T Consensus 80 ~~~~~~~g~~~--~~~g~l~~---a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 80 HEAGAFTGAQK--RHPGRFER---ADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred ccccccCCccc--ccCCchhc---cCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 11000000000 00011111 112258899998877666777777765432 13588888765
No 313
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.78 E-value=0.037 Score=59.45 Aligned_cols=58 Identities=17% Similarity=0.144 Sum_probs=41.9
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCccc----ccccceEEEEEeCCCCCHHHHHHHHHHhcCC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADV----SNNFNVMIWVCVSDPFDVFRVWKAIIENLDG 258 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 258 (949)
.-++.-|+|.+|+|||+|+.+++-.... .+.-..++||+....|+..++.+ +++.++.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 4578899999999999999877532111 12235789999999999877644 5666654
No 314
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.77 E-value=0.024 Score=60.03 Aligned_cols=84 Identities=19% Similarity=0.192 Sum_probs=53.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCC-----CCCcchHHHHHHHH
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYT-----PDLGELNTLHQLIN 274 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 274 (949)
.-+++-|+|++|+||||||.+++.. ....-..++|++....++.. .+++++... ....+.++....+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 4578999999999999999887654 22234568899988776653 334443221 11123444555554
Q ss_pred hhhC-CceEEEEEeCCC
Q 043039 275 NRIG-GKKVLLVLDDVW 290 (949)
Q Consensus 275 ~~l~-~~~~LlVlDdv~ 290 (949)
..++ +..-+||+|.+-
T Consensus 127 ~li~s~~~~lIVIDSva 143 (325)
T cd00983 127 SLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHhccCCCEEEEcchH
Confidence 4443 456699999973
No 315
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.77 E-value=0.057 Score=52.50 Aligned_cols=118 Identities=17% Similarity=0.181 Sum_probs=59.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCC--CCCHHHHHHHHHHhcCCCCCCC---------cchHH-H
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSD--PFDVFRVWKAIIENLDGYTPDL---------GELNT-L 269 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~~---------~~~~~-~ 269 (949)
.+++|+|..|.|||||.+.+.... ......+++.-.. ..........+ ..+... ... -...+ .
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i-~~~~q~-~~~~~~tv~~~lLS~G~~q 103 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNELGDHV-GYLPQD-DELFSGSIAENILSGGQRQ 103 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHHHhhe-EEECCC-CccccCcHHHHCcCHHHHH
Confidence 489999999999999999998742 1222333322111 01111111110 000000 000 01111 1
Q ss_pred HHHHHhhhCCceEEEEEeCCCC-CCcccHHHHHHhhhcc-CCCcEEEEEccchhhHh
Q 043039 270 HQLINNRIGGKKVLLVLDDVWT-EDGNKWESFQRCLINA-HRGSKILVTTRKETVAR 324 (949)
Q Consensus 270 ~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~ 324 (949)
.-.+.+.+-.++=++++|+.-. -|......+...+... ..|..||++|.+.....
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 1223444555666899999843 2333344454555432 24667888888876654
No 316
>PRK09354 recA recombinase A; Provisional
Probab=95.73 E-value=0.027 Score=60.22 Aligned_cols=84 Identities=18% Similarity=0.190 Sum_probs=54.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCC-----CCCcchHHHHHHHH
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYT-----PDLGELNTLHQLIN 274 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 274 (949)
.-+++-|+|++|+||||||.++... ....-..++||+....++.. .+++++... ......++....+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 4579999999999999999887654 22334678899988877753 344444321 11123444445555
Q ss_pred hhhC-CceEEEEEeCCC
Q 043039 275 NRIG-GKKVLLVLDDVW 290 (949)
Q Consensus 275 ~~l~-~~~~LlVlDdv~ 290 (949)
..++ +..-+||+|.|-
T Consensus 132 ~li~s~~~~lIVIDSva 148 (349)
T PRK09354 132 TLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHhhcCCCCEEEEeChh
Confidence 4443 456699999983
No 317
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.73 E-value=0.0029 Score=62.86 Aligned_cols=91 Identities=23% Similarity=0.293 Sum_probs=57.2
Q ss_pred cCCCCCCcCceEEecc--ccCCCCCchhhcccCCcEEEEeccCCC--CCCCCCCCCCCcceeeecCCCCcEEeCCcccCC
Q 043039 771 ALRPHPNLESLQISFY--EVKARFPNWILSLNKLRMLCLSFCKKC--EIMPPLGKLQSLEVLDIWEMHGIKRVGDEVLGI 846 (949)
Q Consensus 771 ~l~~~~~L~~L~L~~~--~~~~~~p~~~~~l~~L~~L~L~~~~~~--~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~ 846 (949)
.+..+++|+.|.++.| ++...++.....+|+|++|++++|++. ..++.+..+++|..|++.+|.... . ......
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~-l-~dyre~ 137 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN-L-DDYREK 137 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc-c-ccHHHH
Confidence 4556678888888888 555545555556788888888888754 455667778888888888887432 1 111111
Q ss_pred CCCCCCccceeeecccc
Q 043039 847 EIIAFPRLKKFTLWSLD 863 (949)
Q Consensus 847 ~~~~f~~L~~L~l~~l~ 863 (949)
....+|+|+.|+-.+..
T Consensus 138 vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 138 VFLLLPSLKYLDGCDVD 154 (260)
T ss_pred HHHHhhhhccccccccC
Confidence 11145666666555543
No 318
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.73 E-value=0.054 Score=52.62 Aligned_cols=117 Identities=20% Similarity=0.164 Sum_probs=61.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcC--CCCC---CC--------cchHH
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLD--GYTP---DL--------GELNT 268 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~--~~~~---~~--------~~~~~ 268 (949)
.+++|+|..|.|||||++.+..... .....+++.-....+.. ..+...+. .+.. .. -...+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~ 100 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHHH
Confidence 4899999999999999999987421 22333433211100000 01111111 0000 00 01111
Q ss_pred H-HHHHHhhhCCceEEEEEeCCCCC-CcccHHHHHHhhhcc-CCCcEEEEEccchhhHh
Q 043039 269 L-HQLINNRIGGKKVLLVLDDVWTE-DGNKWESFQRCLINA-HRGSKILVTTRKETVAR 324 (949)
Q Consensus 269 ~-~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~ 324 (949)
. .-.+.+.+-.++=++++|+--.. |......+...+... ..|..||++|.+.....
T Consensus 101 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 101 KQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 1 12344556667789999997432 333344455555432 23677899998876554
No 319
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.71 E-value=0.05 Score=58.70 Aligned_cols=57 Identities=16% Similarity=0.201 Sum_probs=40.4
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccc----cccceEEEEEeCCCCCHHHHHHHHHHhcC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVS----NNFNVMIWVCVSDPFDVFRVWKAIIENLD 257 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 257 (949)
...++-|+|++|+|||++|.+++-..... +.-..++||+....++..++. ++++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 45789999999999999998876542111 111479999999888877654 4445544
No 320
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.70 E-value=0.049 Score=56.34 Aligned_cols=89 Identities=19% Similarity=0.129 Sum_probs=57.1
Q ss_pred CCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHh-cCC---CC-CCCcchHHHHHH
Q 043039 198 PNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIEN-LDG---YT-PDLGELNTLHQL 272 (949)
Q Consensus 198 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~---~~-~~~~~~~~~~~~ 272 (949)
-+.-+++=|+|+.|.||||+|.+++-. ....-..++|++....+++..+.. ++.. +.. .. ....+...+.+.
T Consensus 57 l~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 57 LPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEK 133 (279)
T ss_pred cccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHH
Confidence 346689999999999999999877654 333444789999999999877543 3333 221 11 111222333344
Q ss_pred HHhhhCCceEEEEEeCC
Q 043039 273 INNRIGGKKVLLVLDDV 289 (949)
Q Consensus 273 l~~~l~~~~~LlVlDdv 289 (949)
+.+....+--|+|+|.+
T Consensus 134 ~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 134 LARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHHhccCCCCEEEEecC
Confidence 44443444569999998
No 321
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.70 E-value=0.049 Score=59.48 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=20.0
Q ss_pred EEEEEEecCCChHHHHHHHHHc
Q 043039 202 QVISLVGMGGIGKTTLAQLAYN 223 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~ 223 (949)
.+++|+|+.|.||||||+.+..
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 4899999999999999999864
No 322
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.70 E-value=0.0093 Score=54.60 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=21.5
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcc
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDAD 226 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~ 226 (949)
--|+|.|++|+||||+++.+.+..+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHH
Confidence 4589999999999999999987533
No 323
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.69 E-value=0.044 Score=66.01 Aligned_cols=134 Identities=16% Similarity=0.116 Sum_probs=75.6
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAII 253 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 253 (949)
..++|+...+.++.+.+..... ...-|.|+|..|+|||++|+.+++.... .-...+.+++..-.. ..+-..+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~r--~~~~~v~i~c~~~~~-~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSGR--NNRRMVKMNCAAMPA-GLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcCC--CCCCeEEEecccCCh-hHhhhhhc
Confidence 3689999888888777654331 2246889999999999999999875321 122345555554221 11111111
Q ss_pred HhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccC-----------CCcEEEEEccc
Q 043039 254 ENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAH-----------RGSKILVTTRK 319 (949)
Q Consensus 254 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 319 (949)
....+...... ......+.. ...=.|+||+|..........+...+.... .+.|||.||..
T Consensus 449 g~~~~~~~g~~--~~~~g~le~---a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 449 GHERGAFTGAS--AQRIGRFEL---ADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred Ccccccccccc--cchhhHHHh---cCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 11111111100 001111211 123469999998877666777777774431 34588888865
No 324
>PRK08233 hypothetical protein; Provisional
Probab=95.69 E-value=0.03 Score=55.08 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 469999999999999999999875
No 325
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.68 E-value=0.078 Score=54.04 Aligned_cols=48 Identities=19% Similarity=0.155 Sum_probs=30.9
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAI 252 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 252 (949)
-.++.|.|.+|+||||+|.++.... .+. -..+++++.. .+..++++.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~-~~~-g~~~~yi~~e--~~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGF-LQN-GYSVSYVSTQ--LTTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HhC-CCcEEEEeCC--CCHHHHHHHH
Confidence 4599999999999999986654431 111 2345666633 3445655555
No 326
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.64 E-value=0.11 Score=54.93 Aligned_cols=52 Identities=19% Similarity=0.203 Sum_probs=35.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHh
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIEN 255 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 255 (949)
-.++.|.|.+|+||||++.++.... ...+-..++|++... +..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~-~~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDL-ITQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH-HHhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 3588899999999999998876642 122235688988876 334455555444
No 327
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.63 E-value=0.073 Score=51.74 Aligned_cols=86 Identities=17% Similarity=0.127 Sum_probs=43.3
Q ss_pred EEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCC-CHHHHHHHHHHhcCCC---CCCCcchHHHH-HHHHhhh
Q 043039 203 VISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPF-DVFRVWKAIIENLDGY---TPDLGELNTLH-QLINNRI 277 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~---~~~~~~~~~~~-~~l~~~l 277 (949)
++.++|++|+||||++..+...... .-..++.++..... ...+.+...+...+.. .....+...+. +.+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~--~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK--KGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--CCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999888764221 21234444443221 2233333334433321 11112333333 3333333
Q ss_pred CCceEEEEEeCCC
Q 043039 278 GGKKVLLVLDDVW 290 (949)
Q Consensus 278 ~~~~~LlVlDdv~ 290 (949)
.+..-++|+|..-
T Consensus 80 ~~~~d~viiDt~g 92 (173)
T cd03115 80 EENFDVVIVDTAG 92 (173)
T ss_pred hCCCCEEEEECcc
Confidence 4343356688764
No 328
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.63 E-value=0.09 Score=59.97 Aligned_cols=60 Identities=20% Similarity=0.339 Sum_probs=42.9
Q ss_pred ccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEe
Q 043039 175 EVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCV 239 (949)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 239 (949)
+++--.+-++++..||...-. +....+++.+.|++|+||||.++.++++. .|+.+=|.+.
T Consensus 20 eLavhkkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~el----g~~v~Ew~np 79 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKEL----GFEVQEWINP 79 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHHh----CCeeEEecCC
Confidence 344456678888888865432 22345799999999999999999998852 3566667643
No 329
>PTZ00035 Rad51 protein; Provisional
Probab=95.63 E-value=0.07 Score=57.63 Aligned_cols=58 Identities=17% Similarity=0.196 Sum_probs=40.1
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHcCccc----ccccceEEEEEeCCCCCHHHHHHHHHHhcC
Q 043039 199 NAIQVISLVGMGGIGKTTLAQLAYNDADV----SNNFNVMIWVCVSDPFDVFRVWKAIIENLD 257 (949)
Q Consensus 199 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 257 (949)
..-.++.|+|.+|+|||||+..++-.... .+.-..++|++....++..+ +.++++.++
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g 177 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFG 177 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhC
Confidence 34579999999999999999887643221 11224577999888777766 444555544
No 330
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.56 E-value=0.06 Score=52.63 Aligned_cols=120 Identities=15% Similarity=0.085 Sum_probs=59.2
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcC--CCCCC---C----------cch
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLD--GYTPD---L----------GEL 266 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~--~~~~~---~----------~~~ 266 (949)
.+++|+|..|.|||||++.+.... ......+.+.-..-.+...-.....+.+. .+.+. . -..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~ 103 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLE---EPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLSG 103 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCCH
Confidence 489999999999999999998642 22333333321110000000001111111 00000 0 001
Q ss_pred HHH-HHHHHhhhCCceEEEEEeCCCC-CCcccHHHHHHhhhcc-CC-CcEEEEEccchhhHh
Q 043039 267 NTL-HQLINNRIGGKKVLLVLDDVWT-EDGNKWESFQRCLINA-HR-GSKILVTTRKETVAR 324 (949)
Q Consensus 267 ~~~-~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~iivTtr~~~v~~ 324 (949)
.+. .-.+.+.+-.++=++++|+--. .|......+...+... .. |..||++|.+.....
T Consensus 104 G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 104 GQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 111 1223455556677899999743 2334444455555432 22 567888888766554
No 331
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.54 E-value=0.006 Score=35.91 Aligned_cols=19 Identities=32% Similarity=0.579 Sum_probs=9.8
Q ss_pred CCeeeecccCCcccchhhc
Q 043039 615 LRYLKLFFVGIEELPETFC 633 (949)
Q Consensus 615 L~~L~L~~~~i~~lp~~l~ 633 (949)
|++|++++|.++.+|++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554443
No 332
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.53 E-value=0.074 Score=50.62 Aligned_cols=117 Identities=15% Similarity=0.047 Sum_probs=62.2
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEE---EEEeCCCCCHHHHHHHHHHh---cCCC----CCCC-cc---hH
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMI---WVCVSDPFDVFRVWKAIIEN---LDGY----TPDL-GE---LN 267 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~---wv~~~~~~~~~~~~~~i~~~---l~~~----~~~~-~~---~~ 267 (949)
..|-|++-.|.||||.|-.+.-. ..++-..++ |+.......-...+..+.-. .+.. ..+. .+ ..
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~r--a~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALR--ALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHH--HHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 57888888999999999655432 111211222 33333233333444332000 0110 0010 11 11
Q ss_pred HHHHHHHhhhCCceE-EEEEeCCCC---CCcccHHHHHHhhhccCCCcEEEEEccch
Q 043039 268 TLHQLINNRIGGKKV-LLVLDDVWT---EDGNKWESFQRCLINAHRGSKILVTTRKE 320 (949)
Q Consensus 268 ~~~~~l~~~l~~~~~-LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 320 (949)
...+..++.+...+| |+|||.+-. ...-..+++...+....++..||+|-|+.
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 223334455544444 999999831 12244567777777777788999999984
No 333
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.53 E-value=0.015 Score=61.25 Aligned_cols=51 Identities=25% Similarity=0.287 Sum_probs=45.2
Q ss_pred cCccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHc
Q 043039 173 VSEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYN 223 (949)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 223 (949)
...|+|.++.++++++.+...+.+.+..-+|+.++|+.|.||||||+.+-+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999887766667789999999999999999988876
No 334
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.53 E-value=0.24 Score=45.88 Aligned_cols=83 Identities=13% Similarity=0.244 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHhHhhhhhHH
Q 043039 2 VDAIVSAVLKQLNSTAVEEAKEQVRLVTGVEKEVKRLQDNLEAIQAVLADAERRQVK-EEHVRLWLDKLKQASYDIDDVL 80 (949)
Q Consensus 2 a~~~v~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~-~~~~~~wl~~l~~~~~~~ed~l 80 (949)
|+.+.+++++.+.+.+...+.+.......++.-+++|..+++.|..++++.+..... +..-+.=++++.+...++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 456666666666666666888888888889999999999999999999999875332 2222677888889999999999
Q ss_pred HHHH
Q 043039 81 DEWN 84 (949)
Q Consensus 81 d~~~ 84 (949)
..|.
T Consensus 83 ~k~s 86 (147)
T PF05659_consen 83 EKCS 86 (147)
T ss_pred HHhc
Confidence 8874
No 335
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.52 E-value=0.042 Score=59.70 Aligned_cols=109 Identities=19% Similarity=0.225 Sum_probs=61.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGG 279 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 279 (949)
..+=+-|||..|.|||.|+..+|+...++.. ..........++-+.+.........+. .+.+.+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k----------~R~HFh~Fm~~vh~~l~~~~~~~~~l~----~va~~l~~ 126 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRK----------RRVHFHEFMLDVHSRLHQLRGQDDPLP----QVADELAK 126 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccc----------ccccccHHHHHHHHHHHHHhCCCccHH----HHHHHHHh
Confidence 4567899999999999999999987433211 111222334444443332211122222 33344455
Q ss_pred ceEEEEEeCCCCCCcccHHHHHHhhhc-cCCCcEEEEEccchhhH
Q 043039 280 KKVLLVLDDVWTEDGNKWESFQRCLIN-AHRGSKILVTTRKETVA 323 (949)
Q Consensus 280 ~~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~ 323 (949)
+..||.||.+.-.|..+-.-+...|.. ...|. |||+|.+....
T Consensus 127 ~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~~P~ 170 (362)
T PF03969_consen 127 ESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNRPPE 170 (362)
T ss_pred cCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCCChH
Confidence 677999999865554443334444433 34565 66666665433
No 336
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.51 E-value=0.051 Score=54.14 Aligned_cols=89 Identities=18% Similarity=0.207 Sum_probs=50.3
Q ss_pred CCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEE---------eCCCCCHHHH--HHHHHHhcCCCCCCC---
Q 043039 198 PNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVC---------VSDPFDVFRV--WKAIIENLDGYTPDL--- 263 (949)
Q Consensus 198 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~---------~~~~~~~~~~--~~~i~~~l~~~~~~~--- 263 (949)
.+++.+|.++||+|.||||.++.++.+... .+....-|+ ...+.++++. +++..++.+......
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~--~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~T 93 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHA--KKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVT 93 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhh--ccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhh
Confidence 345678999999999999999999876332 222222222 2233445443 466777766543322
Q ss_pred ------cchHHHHHHHHhhhCCceEEEEEeCC
Q 043039 264 ------GELNTLHQLINNRIGGKKVLLVLDDV 289 (949)
Q Consensus 264 ------~~~~~~~~~l~~~l~~~~~LlVlDdv 289 (949)
...++....+.+.-..-+| +++|--
T Consensus 94 sLNLF~tk~dqv~~~iek~~~~~~~-~liDTP 124 (366)
T KOG1532|consen 94 SLNLFATKFDQVIELIEKRAEEFDY-VLIDTP 124 (366)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCE-EEEcCC
Confidence 2344455555554444344 445554
No 337
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.079 Score=57.94 Aligned_cols=54 Identities=30% Similarity=0.284 Sum_probs=38.6
Q ss_pred Cccccch---hHHHHHHHHHccCCCC---CCCCeEEEEEEecCCChHHHHHHHHHcCccc
Q 043039 174 SEVCGRN---EEKNALKGKLLSETAE---QPNAIQVISLVGMGGIGKTTLAQLAYNDADV 227 (949)
Q Consensus 174 ~~~~Gr~---~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 227 (949)
.++-|-| .|+++|+++|..+..- +..=++-|.++|++|.|||-||+++..+..+
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 3456665 4678888888665421 1233456889999999999999999987443
No 338
>PRK10867 signal recognition particle protein; Provisional
Probab=95.49 E-value=0.13 Score=57.06 Aligned_cols=26 Identities=38% Similarity=0.415 Sum_probs=21.4
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 199 NAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 199 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..+.+|.++|.+|+||||.+..+...
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~ 123 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKY 123 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 34789999999999999988766553
No 339
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.48 E-value=0.054 Score=58.48 Aligned_cols=131 Identities=11% Similarity=0.072 Sum_probs=70.0
Q ss_pred cccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHH-HHH
Q 043039 176 VCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKA-IIE 254 (949)
Q Consensus 176 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~-i~~ 254 (949)
++|+...+.++.+.+..... .-.-|.|+|..|+||+++|+.++..... .-...+-|++..-.. ..+.. +..
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~s~r--~~~pfv~vnc~~~~~--~~l~~~lfG 72 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYLSKR--WQGPLVKLNCAALSE--NLLDSELFG 72 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHhcCc--cCCCeEEEeCCCCCh--HHHHHHHhc
Confidence 46777777777777754432 2235789999999999999999875221 112334455553221 21111 111
Q ss_pred hcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccC-----------CCcEEEEEccc
Q 043039 255 NLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAH-----------RGSKILVTTRK 319 (949)
Q Consensus 255 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 319 (949)
.-.+....... .....+.. ...-.|+||++..........+...+..+. ...|||.||..
T Consensus 73 ~~~g~~~ga~~--~~~G~~~~---a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 73 HEAGAFTGAQK--RHQGRFER---ADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred cccccccCccc--ccCCchhh---CCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 10000000000 00001111 123468999998776666667777764432 23488888754
No 340
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.46 E-value=0.17 Score=56.22 Aligned_cols=25 Identities=36% Similarity=0.344 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
++.++.++|.+|+||||.|..++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999998777654
No 341
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.45 E-value=0.045 Score=55.30 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
+|+|.|..|+||||+|+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999988864
No 342
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.44 E-value=0.035 Score=54.87 Aligned_cols=44 Identities=20% Similarity=0.133 Sum_probs=29.5
Q ss_pred EEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHH
Q 043039 204 ISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKA 251 (949)
Q Consensus 204 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 251 (949)
+.|.|.+|+|||++|.++....- ..-..++|++... +..++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~--~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL--ARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCC--CHHHHHHH
Confidence 67899999999999988765421 2234577887654 34444333
No 343
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.39 E-value=0.03 Score=55.04 Aligned_cols=78 Identities=19% Similarity=0.282 Sum_probs=45.1
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHh--cCCCCCCCcchHHHHHHHHhh
Q 043039 199 NAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIEN--LDGYTPDLGELNTLHQLINNR 276 (949)
Q Consensus 199 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~--l~~~~~~~~~~~~~~~~l~~~ 276 (949)
..+.+|+|.|.+|.||||+|+.++.. ..... +.-++...-+. ..-.....+. ..-..+...|.+-+.+.+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~--~~~~~--~~~I~~D~YYk-~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQ--LGVEK--VVVISLDDYYK-DQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHH--hCcCc--ceEeecccccc-chhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 45689999999999999999999885 22221 22222111111 1111111111 122334556777777888888
Q ss_pred hCCce
Q 043039 277 IGGKK 281 (949)
Q Consensus 277 l~~~~ 281 (949)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88877
No 344
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.39 E-value=0.064 Score=57.80 Aligned_cols=57 Identities=14% Similarity=0.193 Sum_probs=40.4
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCccc----ccccceEEEEEeCCCCCHHHHHHHHHHhcC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADV----SNNFNVMIWVCVSDPFDVFRVWKAIIENLD 257 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 257 (949)
.-+++-|+|.+|+||||++.+++-.... .+.-..++||+....++..++. ++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 4578999999999999999888654221 1111379999999888877654 4455444
No 345
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.36 E-value=0.11 Score=51.74 Aligned_cols=52 Identities=15% Similarity=0.128 Sum_probs=31.7
Q ss_pred HHhhhCCceEEEEEeCCCC-CCcccHHHHHHhhhcc-CCCcEEEEEccchhhHh
Q 043039 273 INNRIGGKKVLLVLDDVWT-EDGNKWESFQRCLINA-HRGSKILVTTRKETVAR 324 (949)
Q Consensus 273 l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~ 324 (949)
+.+.+-.++=++++|+.-. .|......+...+... ..|..||++|.+.....
T Consensus 115 laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 115 ILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 4455556677999999743 2333444455555432 23667888888876654
No 346
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.25 Score=57.26 Aligned_cols=133 Identities=15% Similarity=0.140 Sum_probs=75.2
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhC
Q 043039 199 NAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIG 278 (949)
Q Consensus 199 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 278 (949)
...+.+.++|++|.|||.||+++.+. ....|-. +... ++....-+ .....+.+.+...-+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~--~~~~fi~-----v~~~--------~l~sk~vG-----esek~ir~~F~~A~~ 333 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALE--SRSRFIS-----VKGS--------ELLSKWVG-----ESEKNIRELFEKARK 333 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhh--CCCeEEE-----eeCH--------HHhccccc-----hHHHHHHHHHHHHHc
Confidence 34568999999999999999999994 3334422 2211 11111111 111223334444446
Q ss_pred CceEEEEEeCCCCC------Cc-----ccHHHHHHhhhcc--CCCcEEEEEccchhhHhh-h----cCcceEeCCCCChH
Q 043039 279 GKKVLLVLDDVWTE------DG-----NKWESFQRCLINA--HRGSKILVTTRKETVARM-I----GSTCVISIEELSEP 340 (949)
Q Consensus 279 ~~~~LlVlDdv~~~------~~-----~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~-~----~~~~~~~l~~l~~~ 340 (949)
..+..|.+|+++.- .. ....++...+... ..+..||-||........ + .-...+.+..-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 78999999999531 10 1222333333222 233334445544333321 1 12558888999999
Q ss_pred hHHHHHHHHhh
Q 043039 341 ECWSLFKRFAF 351 (949)
Q Consensus 341 ~~~~l~~~~~~ 351 (949)
+..++|..+.-
T Consensus 414 ~r~~i~~~~~~ 424 (494)
T COG0464 414 ERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHhc
Confidence 99999999874
No 347
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.30 E-value=0.028 Score=56.43 Aligned_cols=66 Identities=24% Similarity=0.258 Sum_probs=39.4
Q ss_pred HHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHH
Q 043039 182 EKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKA 251 (949)
Q Consensus 182 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 251 (949)
+-.++++.+.... ++..+|+|.|+||+|||||...+....+.+++=-.++=|+-|.+++--.++.+
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGD 79 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGD 79 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccccc
Confidence 3445555554432 35689999999999999999888776444455556777777777765444433
No 348
>PRK05439 pantothenate kinase; Provisional
Probab=95.30 E-value=0.086 Score=55.65 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=22.9
Q ss_pred CCCeEEEEEEecCCChHHHHHHHHHc
Q 043039 198 PNAIQVISLVGMGGIGKTTLAQLAYN 223 (949)
Q Consensus 198 ~~~~~vi~I~G~~GiGKTtLa~~v~~ 223 (949)
.....+|+|.|.+|+||||+|+.+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999988866
No 349
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.29 E-value=0.45 Score=48.85 Aligned_cols=98 Identities=16% Similarity=0.179 Sum_probs=68.7
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCce
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKK 281 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 281 (949)
+...|+|+.|+|||+-++.+++. ....+-+..++.+....+...+.......... ........+...+++..
T Consensus 95 ~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~~~~~~--~~~d~~~~~~~~l~~~~ 166 (297)
T COG2842 95 SLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAFGATDG--TINDLTERLMIRLRDTV 166 (297)
T ss_pred ceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHhcccch--hHHHHHHHHHHHHccCc
Confidence 48889999999999999999984 23344456677777777777766665543322 23334455556668888
Q ss_pred EEEEEeCCCCCCcccHHHHHHhhhcc
Q 043039 282 VLLVLDDVWTEDGNKWESFQRCLINA 307 (949)
Q Consensus 282 ~LlVlDdv~~~~~~~~~~l~~~l~~~ 307 (949)
-+|+.|+........++.++......
T Consensus 167 ~~iivDEA~~L~~~ale~lr~i~d~~ 192 (297)
T COG2842 167 RLIIVDEADRLPYRALEELRRIHDKT 192 (297)
T ss_pred ceeeeehhhccChHHHHHHHHHHHhh
Confidence 89999999887777777777654433
No 350
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.28 E-value=0.12 Score=53.67 Aligned_cols=113 Identities=11% Similarity=0.112 Sum_probs=57.6
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCC-CHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhC-
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPF-DVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIG- 278 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~- 278 (949)
..+++++|.+|+||||++..+..... ..-..+.+++..... ....-++...+.++-+.....+...+.+.+...-+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~--~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFH--GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 35899999999999999988765421 111345566654322 22222333333333222222344444444433211
Q ss_pred CceEEEEEeCCCCC--CcccHHHHHHhhhccCCCcEEEE
Q 043039 279 GKKVLLVLDDVWTE--DGNKWESFQRCLINAHRGSKILV 315 (949)
Q Consensus 279 ~~~~LlVlDdv~~~--~~~~~~~l~~~l~~~~~gs~iiv 315 (949)
.+.=++++|..-.. +.....++...+....+.-.++|
T Consensus 153 ~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LV 191 (270)
T PRK06731 153 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLT 191 (270)
T ss_pred CCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEE
Confidence 23468999998554 22334455544433333333443
No 351
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.27 E-value=0.068 Score=54.09 Aligned_cols=122 Identities=18% Similarity=0.172 Sum_probs=66.4
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcc-ccc----------cc---ceEEEEEeCCC------CCH----------------
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDAD-VSN----------NF---NVMIWVCVSDP------FDV---------------- 245 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~-~~~----------~f---~~~~wv~~~~~------~~~---------------- 245 (949)
.+++|+|+.|.|||||.+.+..-.. .++ .+ ..+.||.-... .++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 5899999999999999999977211 110 01 23555542111 111
Q ss_pred ------HHHHHHHHHhcCCCCCCC-----cchHHHHH-HHHhhhCCceEEEEEeCCCC-CCcccHHHHHHhhhc-cCCCc
Q 043039 246 ------FRVWKAIIENLDGYTPDL-----GELNTLHQ-LINNRIGGKKVLLVLDDVWT-EDGNKWESFQRCLIN-AHRGS 311 (949)
Q Consensus 246 ------~~~~~~i~~~l~~~~~~~-----~~~~~~~~-~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs 311 (949)
.+...+.+++++...-.. -+-.+.++ .+.+.|-.++=|++||.--. .|...-..+...+.. ...|.
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~ 190 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK 190 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 133344444444322111 11122222 35577778888999998533 222333334444433 22388
Q ss_pred EEEEEccchhhH
Q 043039 312 KILVTTRKETVA 323 (949)
Q Consensus 312 ~iivTtr~~~v~ 323 (949)
-||++|.+-...
T Consensus 191 tIl~vtHDL~~v 202 (254)
T COG1121 191 TVLMVTHDLGLV 202 (254)
T ss_pred EEEEEeCCcHHh
Confidence 899999985544
No 352
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.27 E-value=0.17 Score=52.96 Aligned_cols=89 Identities=16% Similarity=0.162 Sum_probs=49.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCH--HHHHHHHHHhcCCCC---CCCcchHH-HHHHH
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDV--FRVWKAIIENLDGYT---PDLGELNT-LHQLI 273 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~---~~~~~~~~-~~~~l 273 (949)
+.+++.++|++|+||||++..+.... ...-..+.+++... +.. .+-+...++..+... ....+... ....+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 46899999999999999998876542 22223566666553 322 233344445544221 11122222 23334
Q ss_pred HhhhCCceEEEEEeCCCC
Q 043039 274 NNRIGGKKVLLVLDDVWT 291 (949)
Q Consensus 274 ~~~l~~~~~LlVlDdv~~ 291 (949)
.....+..=++|+|-.-.
T Consensus 148 ~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHCCCCEEEEeCCCC
Confidence 443334445889998844
No 353
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.27 E-value=0.058 Score=53.59 Aligned_cols=80 Identities=20% Similarity=0.262 Sum_probs=43.0
Q ss_pred EEEEEecCCChHHHHHHHHHcCcccccccc---eEEEEEeCCCCCHHHHHHHHHHhc----CCCCCCCcchHHHHHHHHh
Q 043039 203 VISLVGMGGIGKTTLAQLAYNDADVSNNFN---VMIWVCVSDPFDVFRVWKAIIENL----DGYTPDLGELNTLHQLINN 275 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~i~~~l----~~~~~~~~~~~~~~~~l~~ 275 (949)
||+|.|.+|+||||+|+.+....... ... ....++.......... ...-... .-..++..+.+.+.+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~-~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR-GIPAMEMDIILSLDDFYDDYHL-RDRKGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC-TTTCCCSEEEEEGGGGBHHHHH-HHHHHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc-CcCccceeEEEeecccccccch-hhHhhccccccCCCCccccCHHHHHHHHHH
Confidence 79999999999999999987742211 111 1333333322222221 1111211 1123345667777777776
Q ss_pred hhCCceEEE
Q 043039 276 RIGGKKVLL 284 (949)
Q Consensus 276 ~l~~~~~Ll 284 (949)
..+++..-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 666665433
No 354
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.27 E-value=0.12 Score=51.85 Aligned_cols=62 Identities=10% Similarity=0.109 Sum_probs=37.5
Q ss_pred HhhhCCceEEEEEeCCCC-CCcccHHHHHHhhhc-cCCCcEEEEEccchhhHhhhcCcceEeCCCCC
Q 043039 274 NNRIGGKKVLLVLDDVWT-EDGNKWESFQRCLIN-AHRGSKILVTTRKETVARMIGSTCVISIEELS 338 (949)
Q Consensus 274 ~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~~~~~~~~~~l~~l~ 338 (949)
.+.+-.++-++++|+--. .|......+...+.. ...|..||++|.+...... +.++.++.+.
T Consensus 139 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~~~ 202 (207)
T PRK13539 139 ARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGPFA 202 (207)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecCcc
Confidence 344455677999999743 233344555555543 2346678999888665543 5566666533
No 355
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.27 E-value=0.079 Score=54.16 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=23.3
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 199 NAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 199 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
....+++|.|+.|.|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999988874
No 356
>PRK05973 replicative DNA helicase; Provisional
Probab=95.19 E-value=0.21 Score=50.61 Aligned_cols=113 Identities=16% Similarity=0.099 Sum_probs=58.3
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCC-----------CCCcchHHH
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYT-----------PDLGELNTL 269 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----------~~~~~~~~~ 269 (949)
-.++.|.|.+|+|||++|.++....- ..-..+++++.... ..++...+.. ++... .+....+..
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a--~~Ge~vlyfSlEes--~~~i~~R~~s-~g~d~~~~~~~~~~d~~d~~~~~~i 138 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAM--KSGRTGVFFTLEYT--EQDVRDRLRA-LGADRAQFADLFEFDTSDAICADYI 138 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEEeCC--HHHHHHHHHH-cCCChHHhccceEeecCCCCCHHHH
Confidence 45889999999999999988765421 22345777776654 3333333322 12110 111122223
Q ss_pred HHHHHhhhCCceEEEEEeCCCCC----CcccHHHHHHhhhc--cCCCcEEEEEccch
Q 043039 270 HQLINNRIGGKKVLLVLDDVWTE----DGNKWESFQRCLIN--AHRGSKILVTTRKE 320 (949)
Q Consensus 270 ~~~l~~~l~~~~~LlVlDdv~~~----~~~~~~~l~~~l~~--~~~gs~iivTtr~~ 320 (949)
...+.. ..+.-++|+|.+... .......+...+.. ...|.-||+|+...
T Consensus 139 i~~l~~--~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~ 193 (237)
T PRK05973 139 IARLAS--APRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQID 193 (237)
T ss_pred HHHHHH--hhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 333332 123459999998421 11112222222222 24577788887653
No 357
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.19 E-value=0.31 Score=48.95 Aligned_cols=52 Identities=17% Similarity=0.166 Sum_probs=31.7
Q ss_pred HHhhhCCceEEEEEeCCCCC-CcccHHHHHHhhhccCCCcEEEEEccchhhHh
Q 043039 273 INNRIGGKKVLLVLDDVWTE-DGNKWESFQRCLINAHRGSKILVTTRKETVAR 324 (949)
Q Consensus 273 l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 324 (949)
+.+.+-.++=++++|+.... |......+...+.....|..||++|.+.....
T Consensus 136 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~ 188 (207)
T cd03369 136 LARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTII 188 (207)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 33444456678999998542 33444455555554444667888888766554
No 358
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.19 E-value=0.014 Score=53.54 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=19.2
Q ss_pred EEEEecCCChHHHHHHHHHcC
Q 043039 204 ISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 204 i~I~G~~GiGKTtLa~~v~~~ 224 (949)
|+|.|++|+||||+|+++...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998875
No 359
>PRK07667 uridine kinase; Provisional
Probab=95.19 E-value=0.025 Score=56.07 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=29.1
Q ss_pred HHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 183 KNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 183 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+.|.+.+.... +...+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 455666665432 34589999999999999999988774
No 360
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.18 E-value=0.1 Score=54.15 Aligned_cols=115 Identities=17% Similarity=0.090 Sum_probs=58.8
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCC-CCC------CC-cchHHHHH
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDG-YTP------DL-GELNTLHQ 271 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~~------~~-~~~~~~~~ 271 (949)
...-++|+|+.|.|||||.+.+..... .....+++.-.+-..+ +-..++...... ... +. ..... ..
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k-~~ 184 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKKVGIV-DERSEIAGCVNGVPQHDVGIRTDVLDGCPK-AE 184 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEEeecc-hhHHHHHHHhcccccccccccccccccchH-HH
Confidence 356789999999999999999987522 2223333321110000 011223222211 000 00 01111 11
Q ss_pred HHHhhhC-CceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccchhhHh
Q 043039 272 LINNRIG-GKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKETVAR 324 (949)
Q Consensus 272 ~l~~~l~-~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 324 (949)
.+...+. ..+=++|+|.+-.. ..+..+...+ ..|..||+||....+..
T Consensus 185 ~~~~~i~~~~P~villDE~~~~--e~~~~l~~~~---~~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 185 GMMMLIRSMSPDVIVVDEIGRE--EDVEALLEAL---HAGVSIIATAHGRDVED 233 (270)
T ss_pred HHHHHHHhCCCCEEEEeCCCcH--HHHHHHHHHH---hCCCEEEEEechhHHHH
Confidence 2222222 46779999998432 3344444443 35778999999766643
No 361
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.15 E-value=0.049 Score=54.25 Aligned_cols=118 Identities=14% Similarity=0.216 Sum_probs=58.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCc-------chHHHHHHH
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLG-------ELNTLHQLI 273 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~-------~~~~~~~~l 273 (949)
.+++.|.|+.|.||||+.+.+....-. .+ ...+|.+.. .. -.+...|...++..+.-.. +..++...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~l-a~--~G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIM-AQ--IGCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-HH--cCCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 368999999999999999887643110 00 111111111 11 1222233333332211111 111221111
Q ss_pred HhhhCCceEEEEEeCCCCC-Cccc----HHHHHHhhhccCCCcEEEEEccchhhHhhhc
Q 043039 274 NNRIGGKKVLLVLDDVWTE-DGNK----WESFQRCLINAHRGSKILVTTRKETVARMIG 327 (949)
Q Consensus 274 ~~~l~~~~~LlVlDdv~~~-~~~~----~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~ 327 (949)
+ +..++-|+++|..-.. +..+ ...+...+.. .|+.+|++|...+++....
T Consensus 104 -~-~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 104 -D-YADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred -H-hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 1 2356789999998432 1112 1122333332 3788999999988887654
No 362
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.14 E-value=0.028 Score=57.27 Aligned_cols=56 Identities=23% Similarity=0.253 Sum_probs=44.1
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHH
Q 043039 199 NAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIE 254 (949)
Q Consensus 199 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 254 (949)
+...+|+|.|.||+|||||...+......+++=-.++=|+.|.+++--.++.+=++
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiR 104 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIR 104 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhh
Confidence 46789999999999999999888776656677677888888888876666555443
No 363
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.14 E-value=0.11 Score=50.87 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=31.7
Q ss_pred HHhhhCCceEEEEEeCCCC-CCcccHHHHHHhhhcc-CCCcEEEEEccchhhHh
Q 043039 273 INNRIGGKKVLLVLDDVWT-EDGNKWESFQRCLINA-HRGSKILVTTRKETVAR 324 (949)
Q Consensus 273 l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~ 324 (949)
+.+.+-.++-++++|+--. .|......+...+... ..|..||++|.+.....
T Consensus 115 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 168 (182)
T cd03215 115 LARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELL 168 (182)
T ss_pred HHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 4455556777999999743 2334444555555432 24667899988865443
No 364
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.13 E-value=0.077 Score=61.37 Aligned_cols=135 Identities=13% Similarity=0.113 Sum_probs=77.1
Q ss_pred cCccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 043039 173 VSEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAI 252 (949)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 252 (949)
...++|+...+.++.+.+..-.. .-.-|.|+|..|+|||++|+.++..... .-...+.|++..-.+ ..+...+
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~r--~~~p~v~v~c~~~~~-~~~e~~l 258 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASPR--ADKPLVYLNCAALPE-SLAESEL 258 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCCc--CCCCeEEEEcccCCh-HHHHHHh
Confidence 45699999999999888865442 2346789999999999999999885321 122345566665332 1111111
Q ss_pred HHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccC-----------CCcEEEEEccc
Q 043039 253 IENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAH-----------RGSKILVTTRK 319 (949)
Q Consensus 253 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 319 (949)
.....+....... .....+.. .+.- -|+||++..........+...+..+. ...|||.||..
T Consensus 259 fG~~~g~~~ga~~--~~~g~~~~--a~gG-tL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 259 FGHVKGAFTGAIS--NRSGKFEL--ADGG-TLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred cCccccccCCCcc--cCCcchhh--cCCC-EEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 1111111000000 00001111 1222 47899998877667777777775432 24588888865
No 365
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.09 E-value=0.11 Score=50.49 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.7
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..+|+|+|++|+||||+|+.+...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 459999999999999999999875
No 366
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.09 E-value=0.027 Score=58.82 Aligned_cols=94 Identities=30% Similarity=0.379 Sum_probs=48.5
Q ss_pred HHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHh-cCCCCC
Q 043039 183 KNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIEN-LDGYTP 261 (949)
Q Consensus 183 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~~~~ 261 (949)
...+++.+.... +-+.++|+.|+|||++++........ ..| .+.-++.+...+...++ .+++. +.....
T Consensus 22 ~~~ll~~l~~~~-------~pvLl~G~~GtGKT~li~~~l~~l~~-~~~-~~~~~~~s~~Tts~~~q-~~ie~~l~k~~~ 91 (272)
T PF12775_consen 22 YSYLLDLLLSNG-------RPVLLVGPSGTGKTSLIQNFLSSLDS-DKY-LVITINFSAQTTSNQLQ-KIIESKLEKRRG 91 (272)
T ss_dssp HHHHHHHHHHCT-------EEEEEESSTTSSHHHHHHHHHHCSTT-CCE-EEEEEES-TTHHHHHHH-HCCCTTECECTT
T ss_pred HHHHHHHHHHcC-------CcEEEECCCCCchhHHHHhhhccCCc-ccc-ceeEeeccCCCCHHHHH-HHHhhcEEcCCC
Confidence 445556555432 45689999999999999988764221 122 23345555544443332 22221 111000
Q ss_pred CCcchHHHHHHHHhhhCCceEEEEEeCCCCCCccc
Q 043039 262 DLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNK 296 (949)
Q Consensus 262 ~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~ 296 (949)
. ...--.+|+.++.+||+.-...+.
T Consensus 92 ~----------~~gP~~~k~lv~fiDDlN~p~~d~ 116 (272)
T PF12775_consen 92 R----------VYGPPGGKKLVLFIDDLNMPQPDK 116 (272)
T ss_dssp E----------EEEEESSSEEEEEEETTT-S---T
T ss_pred C----------CCCCCCCcEEEEEecccCCCCCCC
Confidence 0 000114789999999996543333
No 367
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.08 E-value=0.034 Score=53.79 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.|.|.|.+|+||||+|+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999875
No 368
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.08 E-value=0.16 Score=60.30 Aligned_cols=157 Identities=17% Similarity=0.177 Sum_probs=81.7
Q ss_pred ccccchhHHHHHHHHHccCCCC------CCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHH
Q 043039 175 EVCGRNEEKNALKGKLLSETAE------QPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRV 248 (949)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 248 (949)
++.|.+...+++.+.+...... ...-.+-|.++|++|+|||++|+.+.... ...| +.++.++ +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~--~~~f---~~is~~~------~ 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVPF---FTISGSD------F 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCCE---EEEehHH------h
Confidence 4667766665555544221100 00112348999999999999999998752 2232 2233221 1
Q ss_pred HHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCC----------cccHHHHHHh-h---hc--cCCCcE
Q 043039 249 WKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTED----------GNKWESFQRC-L---IN--AHRGSK 312 (949)
Q Consensus 249 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~~~~~l~~~-l---~~--~~~gs~ 312 (949)
.....+ .....+...+...-...+.+|++|+++.-. ...+...... + .. ...+.-
T Consensus 222 ----~~~~~g-----~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vi 292 (644)
T PRK10733 222 ----VEMFVG-----VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 292 (644)
T ss_pred ----HHhhhc-----ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCee
Confidence 111100 011222233333334578999999995421 1112222222 2 11 123444
Q ss_pred EEEEccchhhHhh-h---c-CcceEeCCCCChHhHHHHHHHHhh
Q 043039 313 ILVTTRKETVARM-I---G-STCVISIEELSEPECWSLFKRFAF 351 (949)
Q Consensus 313 iivTtr~~~v~~~-~---~-~~~~~~l~~l~~~~~~~l~~~~~~ 351 (949)
||.||...+.... . + -+..+.+...+.++-.+++..+..
T Consensus 293 vIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 293 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred EEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 5557776554332 1 1 246788888888888888888764
No 369
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.37 Score=47.41 Aligned_cols=55 Identities=16% Similarity=0.139 Sum_probs=33.8
Q ss_pred CceEEEEEeCCCCC-CcccHHHHHHhhhc-cCCCcEEEEEccchhhHhhhcCcceEe
Q 043039 279 GKKVLLVLDDVWTE-DGNKWESFQRCLIN-AHRGSKILVTTRKETVARMIGSTCVIS 333 (949)
Q Consensus 279 ~~~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~~~~~~~~~~ 333 (949)
=++-+.|||..++- |.+....+...+.. ..+|+-+||.|..+.++..+.++.++-
T Consensus 161 lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhv 217 (251)
T COG0396 161 LEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHV 217 (251)
T ss_pred cCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEE
Confidence 35679999998653 22223333333322 245777888888888888776655443
No 370
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.05 E-value=0.31 Score=47.49 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=33.3
Q ss_pred HHHhhhCCceEEEEEeCCCCC-CcccHHHHHHhhhc-cCCCcEEEEEccchhhHhh
Q 043039 272 LINNRIGGKKVLLVLDDVWTE-DGNKWESFQRCLIN-AHRGSKILVTTRKETVARM 325 (949)
Q Consensus 272 ~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~~ 325 (949)
.|.+.|.=++=++.||..-+. |++...++...+.. ...|-.+|+.|..-..|..
T Consensus 146 AIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~ 201 (240)
T COG1126 146 AIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFARE 201 (240)
T ss_pred HHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHH
Confidence 466777777889999998542 33444444444433 3456667777777555544
No 371
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.05 E-value=0.093 Score=50.04 Aligned_cols=116 Identities=18% Similarity=0.182 Sum_probs=61.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCC--CHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPF--DVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGG 279 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 279 (949)
.+++|+|..|.|||||++.+.... ......+++...... ..... ...+.-.. +...-+...-.+.+.+-.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~-qlS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEEL----RRRIGYVP-QLSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHH----HhceEEEe-eCCHHHHHHHHHHHHHhc
Confidence 589999999999999999998752 233444444322111 11111 11111000 011111122224444555
Q ss_pred ceEEEEEeCCCCC-CcccHHHHHHhhhcc-CCCcEEEEEccchhhHhh
Q 043039 280 KKVLLVLDDVWTE-DGNKWESFQRCLINA-HRGSKILVTTRKETVARM 325 (949)
Q Consensus 280 ~~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~~ 325 (949)
.+-++++|+.-.. |......+...+... ..+..+|++|.+......
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 5779999998532 223344444444332 225678888888666554
No 372
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.05 E-value=0.093 Score=54.98 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.5
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHc
Q 043039 199 NAIQVISLVGMGGIGKTTLAQLAYN 223 (949)
Q Consensus 199 ~~~~vi~I~G~~GiGKTtLa~~v~~ 223 (949)
..+.+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999987644
No 373
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.01 E-value=0.041 Score=55.31 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=20.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHc
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYN 223 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~ 223 (949)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47899999999999999988863
No 374
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.00 E-value=0.022 Score=57.72 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.|.|.|++|+||||+|+.+...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999998774
No 375
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.59 Score=47.47 Aligned_cols=97 Identities=24% Similarity=0.334 Sum_probs=59.4
Q ss_pred CccccchhHHHHHHHHHccCCC------CCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETA------EQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFR 247 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 247 (949)
+++.|-|...+.|.+...-+-. +.....+-|.++|++|.||+-||++|..+.. . .|.++|.
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--S-----TFFSvSS------ 199 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--S-----TFFSVSS------ 199 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--C-----ceEEeeh------
Confidence 3467888888888775432211 1223467899999999999999999998632 2 2334443
Q ss_pred HHHHHHHhcCCCCCCCcchHHHHHHHHhhh-CCceEEEEEeCCCC
Q 043039 248 VWKAIIENLDGYTPDLGELNTLHQLINNRI-GGKKVLLVLDDVWT 291 (949)
Q Consensus 248 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~ 291 (949)
.+++....+ +.+.+...+.+.- .+++-+|.+|.++.
T Consensus 200 --SDLvSKWmG------ESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 200 --SDLVSKWMG------ESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred --HHHHHHHhc------cHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 123333222 1233333333332 47899999999954
No 376
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=94.98 E-value=0.15 Score=52.51 Aligned_cols=60 Identities=15% Similarity=0.148 Sum_probs=35.2
Q ss_pred HHhhhCCceEEEEEeCCCC-CCcccHHHHHHhhhcc--CCCcEEEEEccchhhHhhhcCcceEeC
Q 043039 273 INNRIGGKKVLLVLDDVWT-EDGNKWESFQRCLINA--HRGSKILVTTRKETVARMIGSTCVISI 334 (949)
Q Consensus 273 l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~~~~~~~~~l 334 (949)
+.+.+-.++-++++|+.-. .|......+...+... ..|..||++|.+...... .++++.+
T Consensus 143 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~--~d~i~~l 205 (236)
T TIGR03864 143 IARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA--DDRLVVL 205 (236)
T ss_pred HHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh--CCEEEEE
Confidence 3344555677999999743 2334444555555443 246678888888766542 3444444
No 377
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.98 E-value=0.27 Score=49.98 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|..|.|||||++.+...
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 48999999999999999998764
No 378
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.95 E-value=0.39 Score=49.37 Aligned_cols=59 Identities=12% Similarity=0.148 Sum_probs=34.7
Q ss_pred HhhhCCceEEEEEeCCCC-CCcccHHHHHHhhhccCCCcEEEEEccchhhHhhhcCcceEeC
Q 043039 274 NNRIGGKKVLLVLDDVWT-EDGNKWESFQRCLINAHRGSKILVTTRKETVARMIGSTCVISI 334 (949)
Q Consensus 274 ~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l 334 (949)
.+.+-.++=++++|+.-. -|......+...+.....|..||++|.+...... .++++.+
T Consensus 150 a~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~v~~l 209 (234)
T cd03251 150 ARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN--ADRIVVL 209 (234)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh--CCEEEEe
Confidence 344445566999999743 2334444555555443446678888888665543 3444444
No 379
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.94 E-value=0.21 Score=49.82 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=31.8
Q ss_pred HHhhhCCceEEEEEeCCCCC-CcccHHHHHHhhhcc-CCCcEEEEEccchhhHhh
Q 043039 273 INNRIGGKKVLLVLDDVWTE-DGNKWESFQRCLINA-HRGSKILVTTRKETVARM 325 (949)
Q Consensus 273 l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~~ 325 (949)
+.+.+-.++-++++|+--.. |...-..+...+... ..|..||++|.+......
T Consensus 138 laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 192 (200)
T PRK13540 138 LLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK 192 (200)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc
Confidence 33445556779999997432 223334455555432 346779999988765543
No 380
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.94 E-value=0.15 Score=51.78 Aligned_cols=52 Identities=19% Similarity=0.265 Sum_probs=31.7
Q ss_pred HhhhCCceEEEEEeCCCCC-CcccHHHHHHhhhccCCCcEEEEEccchhhHhh
Q 043039 274 NNRIGGKKVLLVLDDVWTE-DGNKWESFQRCLINAHRGSKILVTTRKETVARM 325 (949)
Q Consensus 274 ~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 325 (949)
.+.+-.++-++++|+.-.. |......+...+.....+..||++|.+......
T Consensus 145 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~ 197 (220)
T cd03263 145 AIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEA 197 (220)
T ss_pred HHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH
Confidence 3445567789999998442 333444455555443334668888888765543
No 381
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.94 E-value=0.018 Score=45.95 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
+|+|.|..|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988875
No 382
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.93 E-value=0.27 Score=49.91 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|.|+.|.|||||++.+...
T Consensus 31 ~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 31 EKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999764
No 383
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.84 Score=45.03 Aligned_cols=190 Identities=15% Similarity=0.142 Sum_probs=97.3
Q ss_pred ccccc-hhHHHHHHHHHccCCCC-------CCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHH
Q 043039 175 EVCGR-NEEKNALKGKLLSETAE-------QPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVF 246 (949)
Q Consensus 175 ~~~Gr-~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 246 (949)
+++|+ +..+++|.+.+.-+..+ +-.+++-+.++|++|.|||-||++|+++ ....|+.+|..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs---- 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS---- 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH----
Confidence 36665 66677777665433211 2235567889999999999999999985 23445566642
Q ss_pred HHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCC-----------CcccHHHHHHhhh---c--cCCC
Q 043039 247 RVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTE-----------DGNKWESFQRCLI---N--AHRG 310 (949)
Q Consensus 247 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~~~~~~~l~~~l~---~--~~~g 310 (949)
++.+..-+. ...-..++.-..+ .+-+.+|.+|.+++. +.+........+. . ..+.
T Consensus 216 ----elvqk~ige--gsrmvrelfvmar---ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkn 286 (404)
T KOG0728|consen 216 ----ELVQKYIGE--GSRMVRELFVMAR---EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKN 286 (404)
T ss_pred ----HHHHHHhhh--hHHHHHHHHHHHH---hcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccc
Confidence 111111110 0000111111111 356789999998542 1111112222222 1 2355
Q ss_pred cEEEEEccchhhHhhh-----cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHHh
Q 043039 311 SKILVTTRKETVARMI-----GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIGS 385 (949)
Q Consensus 311 s~iivTtr~~~v~~~~-----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 385 (949)
-+||..|..-++.... ..+..++..+-+++.-.++++-+.-.- +-...-++..+|+++.-..|.---++.+=|+
T Consensus 287 ikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkm-nl~rgi~l~kiaekm~gasgaevk~vcteag 365 (404)
T KOG0728|consen 287 IKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKM-NLTRGINLRKIAEKMPGASGAEVKGVCTEAG 365 (404)
T ss_pred eEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhh-chhcccCHHHHHHhCCCCccchhhhhhhhhh
Confidence 6788877654443221 225678888888877777776554211 1112234555555544333323333333333
No 384
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.92 E-value=0.15 Score=52.12 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=29.8
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDP 242 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 242 (949)
.-.++.|.|.+|+||||+|.++.... . ..-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~-~-~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG-L-RDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-H-hcCCeEEEEEccCC
Confidence 45799999999999999998765431 1 12356788887543
No 385
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.90 E-value=0.37 Score=47.91 Aligned_cols=55 Identities=18% Similarity=0.223 Sum_probs=32.7
Q ss_pred HHHhhhCCceEEEEEeCCCCC-CcccHHHHHHhhhc--cCCCcEEEEEccchhhHhhh
Q 043039 272 LINNRIGGKKVLLVLDDVWTE-DGNKWESFQRCLIN--AHRGSKILVTTRKETVARMI 326 (949)
Q Consensus 272 ~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~iivTtr~~~v~~~~ 326 (949)
.+.+.|.-++=+||+|..-+. |......+...|.. ...+--+|+.|.+-.+...+
T Consensus 151 aIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~ 208 (252)
T COG1124 151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHM 208 (252)
T ss_pred HHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHH
Confidence 355677777889999997432 22333344444433 23344678888886666543
No 386
>PTZ00301 uridine kinase; Provisional
Probab=94.89 E-value=0.043 Score=54.78 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.2
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHH
Confidence 479999999999999999988654
No 387
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.82 E-value=0.024 Score=57.01 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=22.4
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
...+|+|+|++|+||||||+.+...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999864
No 388
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=94.80 E-value=0.32 Score=49.54 Aligned_cols=60 Identities=13% Similarity=0.157 Sum_probs=35.7
Q ss_pred HHhhhCCceEEEEEeCCCC-CCcccHHHHHHhhhcc--CCCcEEEEEccchhhHhhhcCcceEeC
Q 043039 273 INNRIGGKKVLLVLDDVWT-EDGNKWESFQRCLINA--HRGSKILVTTRKETVARMIGSTCVISI 334 (949)
Q Consensus 273 l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~~~~~~~~~l 334 (949)
+.+.+-.++=++|+|+--. .|......+...+... ..|..||++|.+..... . .+.++.+
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~-~d~i~~l 210 (225)
T PRK10247 148 LIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-H-ADKVITL 210 (225)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-h-CCEEEEE
Confidence 3344555677999999733 2334445555555543 23667888888876654 2 4445554
No 389
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.80 E-value=0.22 Score=49.95 Aligned_cols=23 Identities=43% Similarity=0.635 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|.|||||.+.+..-
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999764
No 390
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.79 E-value=0.6 Score=49.93 Aligned_cols=49 Identities=22% Similarity=0.201 Sum_probs=33.3
Q ss_pred eEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHH
Q 043039 331 VISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAV 380 (949)
Q Consensus 331 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 380 (949)
++++.+++.+|+..++..+.-..-- ......+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l-~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWL-RSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcc-ccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999988743221 111333455666666778988543
No 391
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.78 E-value=0.024 Score=57.15 Aligned_cols=25 Identities=36% Similarity=0.565 Sum_probs=22.8
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
+..+|+|.|.+|+||||||+.+...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999875
No 392
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.78 E-value=0.034 Score=57.82 Aligned_cols=23 Identities=35% Similarity=0.294 Sum_probs=18.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
+.|.|+|.+|+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 36899999999999999998774
No 393
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.78 E-value=0.064 Score=56.69 Aligned_cols=83 Identities=20% Similarity=0.166 Sum_probs=49.6
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCC-----CcchHHHHHHHHh
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPD-----LGELNTLHQLINN 275 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 275 (949)
-+++-|+|+.|+||||||-.+... ....-..++||+....++... ++.++.+... ....++..+.+..
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHHH
Confidence 469999999999999999887764 333446789999988776633 4444432211 1223444455555
Q ss_pred hhC-CceEEEEEeCCC
Q 043039 276 RIG-GKKVLLVLDDVW 290 (949)
Q Consensus 276 ~l~-~~~~LlVlDdv~ 290 (949)
.++ +.--++|+|.|-
T Consensus 126 lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHTTSESEEEEE-CT
T ss_pred HhhcccccEEEEecCc
Confidence 554 344589999983
No 394
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.77 E-value=0.065 Score=55.81 Aligned_cols=41 Identities=24% Similarity=0.391 Sum_probs=30.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDP 242 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 242 (949)
.-+++.|.|.+|+|||++|.++.... . ..-..+++++...+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~-a-~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ-A-SRGNPVLFVTVESP 75 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-H-hCCCcEEEEEecCC
Confidence 45789999999999999998875531 1 12346788888743
No 395
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.74 E-value=0.00076 Score=66.84 Aligned_cols=83 Identities=23% Similarity=0.177 Sum_probs=37.6
Q ss_pred CCCCcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCC--CCCCCCCCCCcceeeecCCCCcEEeCCcccCCCCCCC
Q 043039 774 PHPNLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCE--IMPPLGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAF 851 (949)
Q Consensus 774 ~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~--~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f 851 (949)
.++.|+.|.|+-|.++. ...+..|.+|+.|+|..|.+.. .+..+.++|+|+.|.|..++-....+.++...-...+
T Consensus 39 kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~L 116 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVL 116 (388)
T ss_pred hcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHc
Confidence 34555555555555544 1224455555555555554322 2233455556666655554422222222221112245
Q ss_pred Cccceee
Q 043039 852 PRLKKFT 858 (949)
Q Consensus 852 ~~L~~L~ 858 (949)
|+|++|+
T Consensus 117 PnLkKLD 123 (388)
T KOG2123|consen 117 PNLKKLD 123 (388)
T ss_pred ccchhcc
Confidence 5555554
No 396
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.74 E-value=0.21 Score=53.42 Aligned_cols=52 Identities=17% Similarity=0.221 Sum_probs=31.8
Q ss_pred HHhhhCCceEEEEEeCCCC-CCcccHHHHHHhhhccCCCcEEEEEccchhhHh
Q 043039 273 INNRIGGKKVLLVLDDVWT-EDGNKWESFQRCLINAHRGSKILVTTRKETVAR 324 (949)
Q Consensus 273 l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 324 (949)
+.+.+-+++-++++|+--. .|......+...+.....+..||+||.+.....
T Consensus 144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~ 196 (301)
T TIGR03522 144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVE 196 (301)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH
Confidence 3445556778999999743 233334444444444334567999999876443
No 397
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.74 E-value=0.24 Score=49.20 Aligned_cols=22 Identities=23% Similarity=0.157 Sum_probs=20.1
Q ss_pred EEEEEEecCCChHHHHHHHHHc
Q 043039 202 QVISLVGMGGIGKTTLAQLAYN 223 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~ 223 (949)
++++|+|+.|.|||||.+.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 6999999999999999988864
No 398
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.72 E-value=0.39 Score=48.11 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|..|.|||||++.+...
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999764
No 399
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.72 E-value=0.12 Score=53.12 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=33.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHH
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKA 251 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 251 (949)
.-+++.|.|.+|+|||++|.++.... . ..-..++|++... +..++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHH
Confidence 45799999999999999998765431 1 2345688888765 44444444
No 400
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.70 E-value=0.22 Score=50.69 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|.|..|+|||||++.+...
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 401
>PRK04328 hypothetical protein; Provisional
Probab=94.66 E-value=0.13 Score=53.16 Aligned_cols=41 Identities=20% Similarity=0.248 Sum_probs=30.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDP 242 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 242 (949)
.-+++.|.|.+|+|||+||.++.... . ..-..++|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~-~-~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-H-hcCCcEEEEEeeCC
Confidence 45789999999999999998865431 1 23456788887653
No 402
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.65 E-value=0.11 Score=49.05 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
+|.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999998774
No 403
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.62 E-value=0.12 Score=57.18 Aligned_cols=86 Identities=22% Similarity=0.210 Sum_probs=49.9
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCC------CCCCcch-----HHH
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGY------TPDLGEL-----NTL 269 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~------~~~~~~~-----~~~ 269 (949)
-..++|+|..|+|||||++.+.... .....+++.......++.++....+...... ..+.... ...
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 3478999999999999999888642 2233455555445556665554444332110 1111111 111
Q ss_pred HHHHHhhh--CCceEEEEEeCC
Q 043039 270 HQLINNRI--GGKKVLLVLDDV 289 (949)
Q Consensus 270 ~~~l~~~l--~~~~~LlVlDdv 289 (949)
.-.+.+++ +++.+|+++||+
T Consensus 242 a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 12233444 489999999998
No 404
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.60 E-value=0.48 Score=47.80 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|..|.|||||++.+...
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 48999999999999999999764
No 405
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.57 E-value=0.085 Score=57.35 Aligned_cols=80 Identities=19% Similarity=0.223 Sum_probs=48.6
Q ss_pred CccccchhHHHHHHHHHccC--------CCCCCCCeEEEEEEecCCChHHHHHHHHHcCccccccc---ceEEEEEe-CC
Q 043039 174 SEVCGRNEEKNALKGKLLSE--------TAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNF---NVMIWVCV-SD 241 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~-~~ 241 (949)
..++|.++.++.+...+... ....+...+-|.++|++|+|||++|+.+.... ...| +..-++.. ..
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l--~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA--NAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh--CCeEEEeecceeecCCcc
Confidence 45889988888887666532 00012234678899999999999999998752 2233 22222221 22
Q ss_pred CCCHHHHHHHHHHh
Q 043039 242 PFDVFRVWKAIIEN 255 (949)
Q Consensus 242 ~~~~~~~~~~i~~~ 255 (949)
..+..++++.+...
T Consensus 90 G~dvE~i~r~l~e~ 103 (441)
T TIGR00390 90 GRDVESMVRDLTDA 103 (441)
T ss_pred cCCHHHHHHHHHHH
Confidence 23566666665544
No 406
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.54 E-value=0.42 Score=48.92 Aligned_cols=59 Identities=12% Similarity=0.205 Sum_probs=34.9
Q ss_pred HhhhCCceEEEEEeCCCC-CCcccHHHHHHhhhccCCCcEEEEEccchhhHhhhcCcceEeC
Q 043039 274 NNRIGGKKVLLVLDDVWT-EDGNKWESFQRCLINAHRGSKILVTTRKETVARMIGSTCVISI 334 (949)
Q Consensus 274 ~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l 334 (949)
.+.+-.++=++++|+-.. -|......+...+.....|..||++|.+...... .++++.+
T Consensus 151 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~i~~l 210 (229)
T cd03254 151 ARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN--ADKILVL 210 (229)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh--CCEEEEE
Confidence 344556677999999753 2333444455555443346678888888766543 3444444
No 407
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.54 E-value=0.11 Score=56.94 Aligned_cols=82 Identities=22% Similarity=0.218 Sum_probs=48.0
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCC-----CcchHHHHHHHH
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPD-----LGELNTLHQLIN 274 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 274 (949)
.-.++.|.|.+|+|||||+.++.... ...-..++|++.... ..++ ..-++.++..... ..+.+.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~--a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARL--AKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 34699999999999999999887642 222346788876543 3322 2223444432211 123344444432
Q ss_pred hhhCCceEEEEEeCC
Q 043039 275 NRIGGKKVLLVLDDV 289 (949)
Q Consensus 275 ~~l~~~~~LlVlDdv 289 (949)
..+.-+||+|.+
T Consensus 156 ---~~~~~lVVIDSI 167 (372)
T cd01121 156 ---ELKPDLVIIDSI 167 (372)
T ss_pred ---hcCCcEEEEcch
Confidence 235567888887
No 408
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.51 E-value=0.3 Score=49.28 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=20.3
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
+++|+|+.|.|||||++.+..-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999863
No 409
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.50 E-value=0.36 Score=49.85 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=21.2
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|..|+|||||++.+...
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999875
No 410
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.50 E-value=0.15 Score=49.27 Aligned_cols=118 Identities=13% Similarity=-0.048 Sum_probs=62.9
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEE---eCCCCCHHHHHHHH--HHhc--CCC-----CCCCcch--
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVC---VSDPFDVFRVWKAI--IENL--DGY-----TPDLGEL-- 266 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~---~~~~~~~~~~~~~i--~~~l--~~~-----~~~~~~~-- 266 (949)
...|-|+|-.|-||||.|..+.-. ..++-..+..+. -.....-...+..+ +... +.. .....+.
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~r--a~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALR--AVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHH--HHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 358899999999999999655432 111211222222 22123333333331 0000 110 0000111
Q ss_pred -HHHHHHHHhhhCCce-EEEEEeCCCC---CCcccHHHHHHhhhccCCCcEEEEEccch
Q 043039 267 -NTLHQLINNRIGGKK-VLLVLDDVWT---EDGNKWESFQRCLINAHRGSKILVTTRKE 320 (949)
Q Consensus 267 -~~~~~~l~~~l~~~~-~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 320 (949)
....+..++.+...+ =|+|||.+-. ...-..+++...+.....+..||+|-|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 122333445554444 4999999832 22245667888887777788999999974
No 411
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.49 E-value=0.073 Score=48.95 Aligned_cols=44 Identities=23% Similarity=0.323 Sum_probs=32.5
Q ss_pred EEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCC
Q 043039 203 VISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGY 259 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 259 (949)
+|.|.|++|.||||+|+.+..+.... .| +.-.++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCCC
Confidence 68999999999999999998852221 11 2236788888887764
No 412
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.48 E-value=0.24 Score=58.55 Aligned_cols=88 Identities=18% Similarity=0.197 Sum_probs=53.6
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCC-CCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDP-FDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGG 279 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 279 (949)
.+|++++|+.|+||||++.++............+..++.... ....+-++...+.++.+.....+...+.+.+.+ +++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hcC
Confidence 479999999999999999888764221111234555554431 224555666666666544433455555555543 444
Q ss_pred ceEEEEEeCCC
Q 043039 280 KKVLLVLDDVW 290 (949)
Q Consensus 280 ~~~LlVlDdv~ 290 (949)
+. +|++|-.-
T Consensus 264 ~D-~VLIDTAG 273 (767)
T PRK14723 264 KH-LVLIDTVG 273 (767)
T ss_pred CC-EEEEeCCC
Confidence 43 78888885
No 413
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.46 E-value=0.14 Score=51.06 Aligned_cols=84 Identities=25% Similarity=0.341 Sum_probs=51.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCC-CCHHHHHHHHHHhcC-------CCCCCCcchHH-----
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDP-FDVFRVWKAIIENLD-------GYTPDLGELNT----- 268 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~-------~~~~~~~~~~~----- 268 (949)
..++|.|.+|+|||+|+..+.++. .-+.++++.+.+. ..+.++.+++...-. ....+......
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 367999999999999999998763 2344577777654 556666666644311 01111111111
Q ss_pred HHHHHHhhh--CCceEEEEEeCC
Q 043039 269 LHQLINNRI--GGKKVLLVLDDV 289 (949)
Q Consensus 269 ~~~~l~~~l--~~~~~LlVlDdv 289 (949)
..-.+.+++ +++.+|+++||+
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETH
T ss_pred cchhhhHHHhhcCCceeehhhhh
Confidence 011122333 699999999998
No 414
>PRK06762 hypothetical protein; Provisional
Probab=94.43 E-value=0.03 Score=54.06 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 415
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.42 E-value=0.41 Score=47.44 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|.|..|.|||||.+.+..-
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 416
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=94.40 E-value=0.33 Score=49.45 Aligned_cols=51 Identities=12% Similarity=0.155 Sum_probs=31.3
Q ss_pred HhhhCCceEEEEEeCCCC-CCcccHHHHHHhhhcc-CCCcEEEEEccchhhHh
Q 043039 274 NNRIGGKKVLLVLDDVWT-EDGNKWESFQRCLINA-HRGSKILVTTRKETVAR 324 (949)
Q Consensus 274 ~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~ 324 (949)
.+.+-..+-++++|+--. .|......+...+... ..|..||++|.+.....
T Consensus 136 aral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~ 188 (223)
T TIGR03740 136 AIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQ 188 (223)
T ss_pred HHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 344455677999999743 2333444455555432 24667999998876554
No 417
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.39 E-value=0.27 Score=49.13 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998764
No 418
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.38 E-value=0.028 Score=54.42 Aligned_cols=24 Identities=46% Similarity=0.519 Sum_probs=22.1
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
-.+|+|-||-|+||||||+.+.++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 368999999999999999999986
No 419
>PRK06547 hypothetical protein; Provisional
Probab=94.36 E-value=0.036 Score=53.44 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=23.0
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 199 NAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 199 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
....+|+|.|++|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999764
No 420
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.36 E-value=0.088 Score=57.19 Aligned_cols=108 Identities=17% Similarity=0.085 Sum_probs=65.5
Q ss_pred ccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHH
Q 043039 175 EVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIE 254 (949)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 254 (949)
.++|+++....+...+.... -+.+.|.+|+|||+||+.+... .. ...++|.+.......++.....-
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~--------~vll~G~PG~gKT~la~~lA~~--l~---~~~~~i~~t~~l~p~d~~G~~~~ 91 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG--------HVLLEGPPGVGKTLLARALARA--LG---LPFVRIQCTPDLLPSDLLGTYAY 91 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC--------CEEEECCCCccHHHHHHHHHHH--hC---CCeEEEecCCCCCHHHhcCchhH
Confidence 38888888888877776532 5788999999999999999885 22 23456666666665554433222
Q ss_pred hcCCCCCCCcchHHHHHHHHhhhC-----CceEEEEEeCCCCCCcccHHHHHHhhh
Q 043039 255 NLDGYTPDLGELNTLHQLINNRIG-----GKKVLLVLDDVWTEDGNKWESFQRCLI 305 (949)
Q Consensus 255 ~l~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~~~~~~~l~~~l~ 305 (949)
...... ....++.. .-+.++.+|.++.........+...+.
T Consensus 92 ~~~~~~----------~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~ 137 (329)
T COG0714 92 AALLLE----------PGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALE 137 (329)
T ss_pred hhhhcc----------CCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHh
Confidence 211000 00000111 111599999998876555555665554
No 421
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.32 E-value=0.19 Score=55.52 Aligned_cols=89 Identities=17% Similarity=0.224 Sum_probs=47.4
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCC-CCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSD-PFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIG 278 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 278 (949)
+..+++++|+.|+||||++..+..........+.+..+.... .....+-+....+.++.+.....+..++...+ ..++
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al-~~l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLML-HELR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHH-HHhc
Confidence 347999999999999999987765311111123344444332 12333334455555554433333333333333 2344
Q ss_pred CceEEEEEeCCC
Q 043039 279 GKKVLLVLDDVW 290 (949)
Q Consensus 279 ~~~~LlVlDdv~ 290 (949)
++ -++++|-..
T Consensus 269 ~~-d~VLIDTaG 279 (420)
T PRK14721 269 GK-HMVLIDTVG 279 (420)
T ss_pred CC-CEEEecCCC
Confidence 44 467778763
No 422
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.32 E-value=0.12 Score=56.20 Aligned_cols=111 Identities=14% Similarity=0.166 Sum_probs=59.7
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCce
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKK 281 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 281 (949)
..+.|.|+.|.||||+++.+.+. +..+....++. +.++.... .......+... ....+.....+.++..|+..+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp~E~~--~~~~~~~i~q~-evg~~~~~~~~~l~~~lr~~p 196 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDPIEYV--HRNKRSLINQR-EVGLDTLSFANALRAALREDP 196 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCChhhh--ccCccceEEcc-ccCCCCcCHHHHHHHhhccCC
Confidence 58999999999999999988764 22233334433 33321110 00000000000 001112235566777888888
Q ss_pred EEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccchhhH
Q 043039 282 VLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKETVA 323 (949)
Q Consensus 282 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 323 (949)
=.|++|.+.+. ..+.. .+.....|..|+.|.....+.
T Consensus 197 d~i~vgEird~--~~~~~---~l~aa~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 197 DVILIGEMRDL--ETVEL---ALTAAETGHLVFGTLHTNSAA 233 (343)
T ss_pred CEEEEeCCCCH--HHHHH---HHHHHHcCCcEEEEEcCCCHH
Confidence 89999999543 33332 233334466666666654443
No 423
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.32 E-value=0.24 Score=55.60 Aligned_cols=88 Identities=14% Similarity=0.141 Sum_probs=47.6
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCC-CCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSD-PFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGG 279 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 279 (949)
.+|++++|+.|+||||++.++......+.....+..++... .....+-++...+.++.......+.......+ ..+++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-HhccC
Confidence 47999999999999999988876422221112345555443 12333444545555544322222222222222 23444
Q ss_pred ceEEEEEeCCC
Q 043039 280 KKVLLVLDDVW 290 (949)
Q Consensus 280 ~~~LlVlDdv~ 290 (949)
+ ..+++|-..
T Consensus 335 ~-d~VLIDTaG 344 (484)
T PRK06995 335 K-HIVLIDTIG 344 (484)
T ss_pred C-CeEEeCCCC
Confidence 4 477888874
No 424
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.30 E-value=0.45 Score=48.96 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=36.2
Q ss_pred HHhhhCCceEEEEEeCCCCC-CcccHHHHHHhhhccCCCcEEEEEccchhhHhhhcCcceEeC
Q 043039 273 INNRIGGKKVLLVLDDVWTE-DGNKWESFQRCLINAHRGSKILVTTRKETVARMIGSTCVISI 334 (949)
Q Consensus 273 l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l 334 (949)
+.+.+-.++-++++|+.-.. |......+...+.....|..||++|.+...... .++.+.+
T Consensus 148 la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~--~d~~~~l 208 (236)
T cd03253 148 IARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN--ADKIIVL 208 (236)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh--CCEEEEE
Confidence 34555567789999998542 333444555555443336678888888766543 3444444
No 425
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=94.30 E-value=0.45 Score=49.38 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|..|.|||||++.+...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 28 EVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 48999999999999999998875
No 426
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.29 E-value=0.56 Score=51.89 Aligned_cols=26 Identities=35% Similarity=0.357 Sum_probs=22.1
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 199 NAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 199 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
....+|.++|..|+||||++.++...
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34689999999999999999877653
No 427
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.29 E-value=0.036 Score=66.62 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=20.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHc
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYN 223 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~ 223 (949)
.++++|+|+.|.||||+.+.+..
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~ 344 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGL 344 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHH
Confidence 46899999999999999988754
No 428
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.25 E-value=0.64 Score=47.86 Aligned_cols=50 Identities=10% Similarity=0.213 Sum_probs=31.6
Q ss_pred hhhCCceEEEEEeCCCC-CCcccHHHHHHhhhccCCCcEEEEEccchhhHh
Q 043039 275 NRIGGKKVLLVLDDVWT-EDGNKWESFQRCLINAHRGSKILVTTRKETVAR 324 (949)
Q Consensus 275 ~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 324 (949)
+.+-.++=++++|+.-. .|......+...+.....|..||++|.+.....
T Consensus 151 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~ 201 (237)
T cd03252 151 RALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK 201 (237)
T ss_pred HHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence 44445667999999844 233444445555544344777899988877664
No 429
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.25 E-value=0.35 Score=47.90 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|..|.|||||++.+...
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999863
No 430
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.24 E-value=0.55 Score=47.41 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|..|.|||||++.+...
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 48999999999999999999864
No 431
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.23 E-value=0.027 Score=50.09 Aligned_cols=27 Identities=37% Similarity=0.571 Sum_probs=18.3
Q ss_pred EEEEecCCChHHHHHHHHHcCcccccccc
Q 043039 204 ISLVGMGGIGKTTLAQLAYNDADVSNNFN 232 (949)
Q Consensus 204 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~ 232 (949)
|.|+|.+|+||||+|+.+... ....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~--~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS--LGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH--TT--EE
T ss_pred EeeECCCccHHHHHHHHHHHH--cCCcee
Confidence 578999999999999999885 555664
No 432
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=94.22 E-value=0.061 Score=66.00 Aligned_cols=137 Identities=17% Similarity=0.120 Sum_probs=71.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcCc--ccccccceEEEEEeCCC----CCHH--HHHHHHHHhcCCCCCCCcchHHHHHHH
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDA--DVSNNFNVMIWVCVSDP----FDVF--RVWKAIIENLDGYTPDLGELNTLHQLI 273 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~--~~~~~f~~~~wv~~~~~----~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~l 273 (949)
.-+.|+|.+|.||||..+.+.-.. +....=+..+++..... .... .+..-+...+..... ........
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~----~~~~~~~~ 298 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGI----AKQLIEAH 298 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCC----cchhhHHH
Confidence 478999999999999998775431 11111233344433211 1111 111122222221111 11122222
Q ss_pred HhhhCCceEEEEEeCCCCCCcccHH----HHHHhhhccCCCcEEEEEccchhhHhhhcCcceEeCCCCChHhHH
Q 043039 274 NNRIGGKKVLLVLDDVWTEDGNKWE----SFQRCLINAHRGSKILVTTRKETVARMIGSTCVISIEELSEPECW 343 (949)
Q Consensus 274 ~~~l~~~~~LlVlDdv~~~~~~~~~----~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~~l~~~~~~ 343 (949)
.++++..++++++|+++......-. .+... .+.-+.++||+|+|....-.....-..+++..+.++...
T Consensus 299 ~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f-~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~ 371 (824)
T COG5635 299 QELLKTGKLLLLLDGLDELEPKNQRALIREINKF-LQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQIN 371 (824)
T ss_pred HHHHhccchhhHhhccchhhhhhHHHHHHHHHHH-hhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHH
Confidence 5778889999999999664322111 12222 223357899999987555443333445666666665544
No 433
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.15 E-value=0.053 Score=50.75 Aligned_cols=36 Identities=31% Similarity=0.171 Sum_probs=25.9
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEE
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVC 238 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 238 (949)
..||-|.|.+|+||||||+.+.... ...-..+++++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L--~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL--FARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH--HHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEec
Confidence 3589999999999999999998863 22333455554
No 434
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.14 E-value=0.41 Score=49.33 Aligned_cols=58 Identities=17% Similarity=0.244 Sum_probs=34.2
Q ss_pred hhhCCceEEEEEeCCCCC-CcccHHHHHHhhhccCCCcEEEEEccchhhHhhhcCcceEeC
Q 043039 275 NRIGGKKVLLVLDDVWTE-DGNKWESFQRCLINAHRGSKILVTTRKETVARMIGSTCVISI 334 (949)
Q Consensus 275 ~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l 334 (949)
+.+-.++=++++|+.... |......+...+.....|..||++|.+...... .++++.+
T Consensus 152 ~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~--~d~v~~l 210 (238)
T cd03249 152 RALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRN--ADLIAVL 210 (238)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh--CCEEEEE
Confidence 444455669999998542 333444455555443356778888888666542 3444444
No 435
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.14 E-value=1.1 Score=46.82 Aligned_cols=59 Identities=14% Similarity=0.172 Sum_probs=41.2
Q ss_pred CceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccc-hhhHhhh-cCcceEeCCCC
Q 043039 279 GKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRK-ETVARMI-GSTCVISIEEL 337 (949)
Q Consensus 279 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~-~~~~~~~l~~l 337 (949)
+++=++|+|+++....+.++.+...+..-..++.+|++|.+ ..+...+ .....+.+.++
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 45558999999888878899999988776667777776666 4444333 23456666654
No 436
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.13 E-value=0.48 Score=49.15 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|..|.|||||++.++..
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999864
No 437
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.13 E-value=0.095 Score=53.55 Aligned_cols=86 Identities=23% Similarity=0.268 Sum_probs=49.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCC---------------CCC--
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGY---------------TPD-- 262 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~---------------~~~-- 262 (949)
.-+++.|.|.+|+|||++|.++.... .+..-+.++|++...+. .++.+.+- .++-. ...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~-~~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNG-LKNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH-HHHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHh-hhhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEecccccc
Confidence 34689999999999999998765431 11113467888876543 44433322 22211 000
Q ss_pred ---CcchHHHHHHHHhhhCC-ceEEEEEeCC
Q 043039 263 ---LGELNTLHQLINNRIGG-KKVLLVLDDV 289 (949)
Q Consensus 263 ---~~~~~~~~~~l~~~l~~-~~~LlVlDdv 289 (949)
..+.+.+...+.+.++. +...+|+|.+
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 23556666666665542 3468999997
No 438
>PRK03839 putative kinase; Provisional
Probab=94.11 E-value=0.035 Score=54.40 Aligned_cols=22 Identities=36% Similarity=0.702 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.|.|.|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999885
No 439
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.09 E-value=0.55 Score=46.88 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|..|.|||||++.+...
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhccc
Confidence 59999999999999999998764
No 440
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.06 E-value=0.7 Score=47.88 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|..|.|||||.+.+...
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 29 KITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 48999999999999999999764
No 441
>PRK04040 adenylate kinase; Provisional
Probab=94.05 E-value=0.041 Score=54.02 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+|+|+|++|+||||+++.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 58999999999999999999875
No 442
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.98 E-value=0.44 Score=50.35 Aligned_cols=52 Identities=10% Similarity=0.134 Sum_probs=31.7
Q ss_pred HHhhhCCceEEEEEeCCCCC-CcccHHHHHHhhhcc--CCCcEEEEEccchhhHh
Q 043039 273 INNRIGGKKVLLVLDDVWTE-DGNKWESFQRCLINA--HRGSKILVTTRKETVAR 324 (949)
Q Consensus 273 l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~ 324 (949)
+.+.+-.++-++|+|+.-.. |......+...+... ..|..||++|.+.....
T Consensus 151 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~ 205 (279)
T PRK13650 151 IAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA 205 (279)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 34455566789999998543 333344455555432 23677888888866554
No 443
>PRK14527 adenylate kinase; Provisional
Probab=93.97 E-value=0.11 Score=51.50 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
...+|.|+|++|+||||+|+.+...
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~ 29 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQE 29 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998764
No 444
>PHA00729 NTP-binding motif containing protein
Probab=93.97 E-value=0.049 Score=54.24 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
+...|.|+|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998874
No 445
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.95 E-value=0.075 Score=51.82 Aligned_cols=22 Identities=41% Similarity=0.597 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998874
No 446
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.95 E-value=0.4 Score=49.14 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 27 EFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999875
No 447
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=93.93 E-value=0.22 Score=59.72 Aligned_cols=131 Identities=16% Similarity=0.073 Sum_probs=72.7
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAII 253 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 253 (949)
+.++|....+.++.+.+..... ...-|.|+|..|+||+++|+.+.+.... .-...+.|++..-.. ..+..+++
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~~A~~ih~~s~r--~~~pfv~vnc~~~~~-~~~~~elf 397 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK----SSFPVLLCGEEGVGKALLAQAIHNESER--AAGPYIAVNCQLYPD-EALAEEFL 397 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCcCHHHHHHHHHHhCCc--cCCCeEEEECCCCCh-HHHHHHhc
Confidence 3578998888888887754432 1224789999999999999999875221 112334455554332 22222222
Q ss_pred HhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccC---C--------CcEEEEEccc
Q 043039 254 ENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAH---R--------GSKILVTTRK 319 (949)
Q Consensus 254 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~---~--------gs~iivTtr~ 319 (949)
......... ... ..+. ....=.|+||++..........+...+..+. . ..|||.||..
T Consensus 398 g~~~~~~~~-~~~----g~~~---~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 398 GSDRTDSEN-GRL----SKFE---LAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred CCCCcCccC-CCC----Ccee---ECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 211100000 000 0010 1123369999998877677777777775432 1 3467777664
No 448
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=93.92 E-value=0.68 Score=48.19 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|..|.|||||++.+...
T Consensus 39 e~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999764
No 449
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.90 E-value=0.51 Score=46.36 Aligned_cols=20 Identities=25% Similarity=0.213 Sum_probs=18.1
Q ss_pred EEEEEecCCChHHHHHHHHH
Q 043039 203 VISLVGMGGIGKTTLAQLAY 222 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~ 222 (949)
++.|+|+.|.||||+.+.+.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred CEEEECCCCCcHHHHHHHHH
Confidence 46799999999999999887
No 450
>PRK00625 shikimate kinase; Provisional
Probab=93.90 E-value=0.039 Score=53.19 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.|.++||+|+||||+++.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999774
No 451
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=93.90 E-value=0.49 Score=47.27 Aligned_cols=60 Identities=18% Similarity=0.304 Sum_probs=36.0
Q ss_pred HHhhhCCceEEEEEeCCCCC-CcccHH-HHHHhhhccCC--CcEEEEEccchhhHhhhcCcceEeC
Q 043039 273 INNRIGGKKVLLVLDDVWTE-DGNKWE-SFQRCLINAHR--GSKILVTTRKETVARMIGSTCVISI 334 (949)
Q Consensus 273 l~~~l~~~~~LlVlDdv~~~-~~~~~~-~l~~~l~~~~~--gs~iivTtr~~~v~~~~~~~~~~~l 334 (949)
+.+.+..++-++++|+.-.. +..... .+...+..... |..||++|.+...... .+.++.+
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l 195 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRV 195 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEE
Confidence 44556677889999998542 223344 45555544322 5668888888776543 3344444
No 452
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.89 E-value=0.15 Score=59.10 Aligned_cols=132 Identities=14% Similarity=0.136 Sum_probs=72.3
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAII 253 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 253 (949)
..++|....+.++.+.+..... .-.-|.|+|..|+||+++|+.++.... ..-...+.++++.-.+ ..+..
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s~--r~~~pfv~inca~~~~--~~~e~-- 273 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLRSP--RGKKPFLALNCASIPD--DVVES-- 273 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHhCC--CCCCCeEEeccccCCH--HHHHH--
Confidence 3589998888888877653321 122478999999999999999876421 1112334566655331 22111
Q ss_pred HhcCCCCCCC-cc-hHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccC-----------CCcEEEEEccc
Q 043039 254 ENLDGYTPDL-GE-LNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAH-----------RGSKILVTTRK 319 (949)
Q Consensus 254 ~~l~~~~~~~-~~-~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 319 (949)
.+.+..... .. .+.....+.. ...=.|+||+++.........+...+..+. ...|||.||..
T Consensus 274 -elFG~~~~~~~~~~~~~~g~~e~---a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~ 348 (520)
T PRK10820 274 -ELFGHAPGAYPNALEGKKGFFEQ---ANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQK 348 (520)
T ss_pred -HhcCCCCCCcCCcccCCCChhhh---cCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCC
Confidence 222211100 00 0000001111 112357899998877666777777775431 13478887765
No 453
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.89 E-value=0.17 Score=55.95 Aligned_cols=85 Identities=25% Similarity=0.253 Sum_probs=49.2
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCC-------CCCCcchHH-----H
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGY-------TPDLGELNT-----L 269 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~-----~ 269 (949)
..++|.|..|+|||||++.+..... ....++.........+.++..+.+..-+.. ..+...... .
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~ 217 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYT 217 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHH
Confidence 5789999999999999998887522 223333333344455666665544432111 111111111 1
Q ss_pred HHHHHhhh--CCceEEEEEeCC
Q 043039 270 HQLINNRI--GGKKVLLVLDDV 289 (949)
Q Consensus 270 ~~~l~~~l--~~~~~LlVlDdv 289 (949)
.-.+.+++ +++++|+++||+
T Consensus 218 a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 218 ATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 12244554 588999999998
No 454
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=93.88 E-value=0.3 Score=52.97 Aligned_cols=53 Identities=21% Similarity=0.252 Sum_probs=32.1
Q ss_pred HHhhhCCceEEEEEeCCCCC-CcccHHHHHHhhhcc--CCCcEEEEEccchhhHhh
Q 043039 273 INNRIGGKKVLLVLDDVWTE-DGNKWESFQRCLINA--HRGSKILVTTRKETVARM 325 (949)
Q Consensus 273 l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~ 325 (949)
+.+.|-.++-++++|+.-.. |...-..+...+... ..|..||++|.+.++...
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~ 206 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKR 206 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 44556667789999998432 223333444444442 236678888888776644
No 455
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.87 E-value=0.14 Score=54.91 Aligned_cols=112 Identities=13% Similarity=0.124 Sum_probs=54.6
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCce
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKK 281 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 281 (949)
..+.|+|..|.||||+++.+..... ... .++.+.-..+..... .................-...+.+...|+..+
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~--~~~-~iv~ied~~El~~~~--~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~p 219 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIP--KDE-RIITIEDTREIFLPH--PNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRP 219 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCC--ccc-cEEEEcCccccCCCC--CCEEEEEecCCCCCcCccCHHHHHHHHhcCCC
Confidence 5899999999999999998886521 111 222221111111110 00000000000001111234455666777778
Q ss_pred EEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccchhhH
Q 043039 282 VLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKETVA 323 (949)
Q Consensus 282 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 323 (949)
=.||+|.+... +.++ +...+..+.. -++.|+....+.
T Consensus 220 d~ii~gE~r~~--e~~~-~l~a~~~g~~--~~i~T~Ha~~~~ 256 (308)
T TIGR02788 220 DRIILGELRGD--EAFD-FIRAVNTGHP--GSITTLHAGSPE 256 (308)
T ss_pred CeEEEeccCCH--HHHH-HHHHHhcCCC--eEEEEEeCCCHH
Confidence 88999999652 3333 2233332222 246676654433
No 456
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=93.87 E-value=0.37 Score=51.61 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|.|||||++.+..-
T Consensus 20 e~~~l~G~NGaGKSTLl~~l~Gl 42 (302)
T TIGR01188 20 EVFGFLGPNGAGKTTTIRMLTTL 42 (302)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999764
No 457
>PHA02774 E1; Provisional
Probab=93.86 E-value=0.29 Score=55.40 Aligned_cols=50 Identities=18% Similarity=0.075 Sum_probs=34.7
Q ss_pred HHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeC
Q 043039 182 EKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVS 240 (949)
Q Consensus 182 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 240 (949)
-+..+..+|.. .++...+.|+|++|+|||.+|..+.+-. . ...+.||+..
T Consensus 420 fl~~lk~~l~~-----~PKknciv~~GPP~TGKS~fa~sL~~~L--~--G~vi~fvN~~ 469 (613)
T PHA02774 420 FLTALKDFLKG-----IPKKNCLVIYGPPDTGKSMFCMSLIKFL--K--GKVISFVNSK 469 (613)
T ss_pred HHHHHHHHHhc-----CCcccEEEEECCCCCCHHHHHHHHHHHh--C--CCEEEEEECc
Confidence 45566666632 2345689999999999999999998742 1 2345667653
No 458
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.85 E-value=0.2 Score=55.22 Aligned_cols=84 Identities=21% Similarity=0.281 Sum_probs=50.5
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCC-CCHHHHHHHHHHhcCCC-------CCCCcchH-----H
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDP-FDVFRVWKAIIENLDGY-------TPDLGELN-----T 268 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~-----~ 268 (949)
..++|+|..|+|||||++.+.+.. ..+.++.+-+.+. ..+.++..+++..-... ..+..... .
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCE 238 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHH
Confidence 578999999999999999998742 2245555666544 44555666654431111 11111111 1
Q ss_pred HHHHHHhhh--CCceEEEEEeCC
Q 043039 269 LHQLINNRI--GGKKVLLVLDDV 289 (949)
Q Consensus 269 ~~~~l~~~l--~~~~~LlVlDdv 289 (949)
..-.+.+++ +++++|+++||+
T Consensus 239 ~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 239 TATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCh
Confidence 112244444 589999999998
No 459
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.85 E-value=0.22 Score=55.09 Aligned_cols=85 Identities=24% Similarity=0.243 Sum_probs=50.0
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCC-CCHHHHHHHHHHhcCCC-------CCCCcchH-----
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDP-FDVFRVWKAIIENLDGY-------TPDLGELN----- 267 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 267 (949)
-..++|+|..|+|||||++.+.+... .+.++++-+... ..+.++..+.+..-+.. ..+.....
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 35789999999999999999987522 234455555443 44555555554432110 11111111
Q ss_pred HHHHHHHhhh--CCceEEEEEeCC
Q 043039 268 TLHQLINNRI--GGKKVLLVLDDV 289 (949)
Q Consensus 268 ~~~~~l~~~l--~~~~~LlVlDdv 289 (949)
...-.+.+++ +++.+|+++||+
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCc
Confidence 1112234444 589999999998
No 460
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.84 E-value=0.12 Score=61.18 Aligned_cols=84 Identities=21% Similarity=0.168 Sum_probs=55.2
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCC-----CCcchHHHHHHHH
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTP-----DLGELNTLHQLIN 274 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 274 (949)
.-+++-|+|.+|+||||||.+++.. ....-..++|++....++.. .+++++.... .....+.....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 4578999999999999999776543 22233567999988877742 5666654321 1123344555555
Q ss_pred hhhC-CceEEEEEeCCC
Q 043039 275 NRIG-GKKVLLVLDDVW 290 (949)
Q Consensus 275 ~~l~-~~~~LlVlDdv~ 290 (949)
..++ ++.-|||+|.+-
T Consensus 132 ~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 132 MLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHhhcCCCeEEEEcchh
Confidence 5554 456699999984
No 461
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.83 E-value=0.048 Score=53.92 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..++|+|.|++|+||||+|+.+...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999999998853
No 462
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.83 E-value=0.13 Score=54.88 Aligned_cols=96 Identities=22% Similarity=0.205 Sum_probs=58.9
Q ss_pred HHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCC
Q 043039 183 KNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPD 262 (949)
Q Consensus 183 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 262 (949)
..++-+.|-..- -.-++|.|-|-+|||||||.-++..+ ....- .+++|+..+. ..++ +--+++++....+
T Consensus 79 ~~EldRVLGGG~----V~Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEES--~~Qi-klRA~RL~~~~~~ 148 (456)
T COG1066 79 IEELDRVLGGGL----VPGSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEES--LQQI-KLRADRLGLPTNN 148 (456)
T ss_pred hHHHHhhhcCCc----ccccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCcC--HHHH-HHHHHHhCCCccc
Confidence 444555553321 24579999999999999999888875 22222 6778776653 3222 2234556543322
Q ss_pred -----CcchHHHHHHHHhhhCCceEEEEEeCCCC
Q 043039 263 -----LGELNTLHQLINNRIGGKKVLLVLDDVWT 291 (949)
Q Consensus 263 -----~~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 291 (949)
..+.+.+.+.+.+ .++-++|+|-+..
T Consensus 149 l~l~aEt~~e~I~~~l~~---~~p~lvVIDSIQT 179 (456)
T COG1066 149 LYLLAETNLEDIIAELEQ---EKPDLVVIDSIQT 179 (456)
T ss_pred eEEehhcCHHHHHHHHHh---cCCCEEEEeccce
Confidence 2445555555444 6788999999854
No 463
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.82 E-value=0.3 Score=50.87 Aligned_cols=81 Identities=17% Similarity=0.215 Sum_probs=44.8
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCce
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKK 281 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 281 (949)
.++.|.|..|.||||++..+... +...-..++ .+.++.... +.. ..++....... ......++..|+..+
T Consensus 81 GlilisG~tGSGKTT~l~all~~--i~~~~~~ii--tiEdp~E~~--~~~-~~q~~v~~~~~---~~~~~~l~~~lR~~P 150 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSE--LNTPEKNII--TVEDPVEYQ--IPG-INQVQVNEKAG---LTFARGLRAILRQDP 150 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhh--hCCCCCeEE--EECCCceec--CCC-ceEEEeCCcCC---cCHHHHHHHHhccCC
Confidence 48999999999999999987654 211111222 333322110 000 11111111111 124566677778788
Q ss_pred EEEEEeCCCCC
Q 043039 282 VLLVLDDVWTE 292 (949)
Q Consensus 282 ~LlVlDdv~~~ 292 (949)
=.|+++++.+.
T Consensus 151 D~i~vgEiR~~ 161 (264)
T cd01129 151 DIIMVGEIRDA 161 (264)
T ss_pred CEEEeccCCCH
Confidence 89999999553
No 464
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.82 E-value=1 Score=43.45 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=19.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
+.|.+.|.+|+||||+|+++...
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~ 24 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKE 24 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHH
Confidence 35788999999999999988764
No 465
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.80 E-value=0.12 Score=52.23 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 466
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=93.80 E-value=0.57 Score=49.74 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.2
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.++++.|+.|+|||||.+.+..-
T Consensus 32 ei~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 32 EIFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 59999999999999999999874
No 467
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=93.79 E-value=0.38 Score=51.52 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|.|+.|.|||||.+.+..-
T Consensus 34 ei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 34 ECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999764
No 468
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=93.78 E-value=1.9 Score=45.30 Aligned_cols=69 Identities=19% Similarity=0.236 Sum_probs=48.5
Q ss_pred CceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccc-hhhHhhhcC-cceEeCCCCChHhHHHHHHH
Q 043039 279 GKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRK-ETVARMIGS-TCVISIEELSEPECWSLFKR 348 (949)
Q Consensus 279 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~~-~~~~~l~~l~~~~~~~l~~~ 348 (949)
+++=++|+|+++.......+.+...+..-.+++.+|++|.+ ..+...+.+ ...+.+.+ +.++..+.+..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 55669999999988878888899888776666777777765 445544433 56777766 66666666643
No 469
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.76 E-value=0.046 Score=51.01 Aligned_cols=20 Identities=40% Similarity=0.723 Sum_probs=18.6
Q ss_pred EEEEEecCCChHHHHHHHHH
Q 043039 203 VISLVGMGGIGKTTLAQLAY 222 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~ 222 (949)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 470
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.75 E-value=0.36 Score=53.44 Aligned_cols=120 Identities=19% Similarity=0.180 Sum_probs=63.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCC-------CCCCcc-----hHH
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGY-------TPDLGE-----LNT 268 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~-----~~~ 268 (949)
-..++|.|..|+|||||++.+..... ....++...-.....+.+++...+..-+.. ..+... ...
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~ 232 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAK---ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAK 232 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCC---CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHH
Confidence 35789999999999999999987532 222344333344467777766655542211 011111 111
Q ss_pred HHHHHHhhh--CCceEEEEEeCCCCCCcccHHHHHHhh--hccCCCcEEEEEccchhhHhh
Q 043039 269 LHQLINNRI--GGKKVLLVLDDVWTEDGNKWESFQRCL--INAHRGSKILVTTRKETVARM 325 (949)
Q Consensus 269 ~~~~l~~~l--~~~~~LlVlDdv~~~~~~~~~~l~~~l--~~~~~gs~iivTtr~~~v~~~ 325 (949)
....+.+++ ++++.|||+|++-.-. ....++...+ ++. .|--..+.|....+...
T Consensus 233 ~a~~iAEyfr~~G~~VLlilDslTr~a-~A~reisl~~~e~p~-~G~~~~~~s~l~~L~ER 291 (432)
T PRK06793 233 LATSIAEYFRDQGNNVLLMMDSVTRFA-DARRSVDIAVKELPI-GGKTLLMESYMKKLLER 291 (432)
T ss_pred HHHHHHHHHHHcCCcEEEEecchHHHH-HHHHHHHHHhcCCCC-CCeeeeeeccchhHHHH
Confidence 222333444 4889999999983321 1223332222 121 25555555555544443
No 471
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.74 E-value=0.33 Score=51.68 Aligned_cols=84 Identities=21% Similarity=0.241 Sum_probs=48.6
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEe-CCCCCHHHHHHHHHHhcCCC-------CCCCcchH-----H
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCV-SDPFDVFRVWKAIIENLDGY-------TPDLGELN-----T 268 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~-------~~~~~~~~-----~ 268 (949)
..++|+|..|.|||||++.+.+... . +..+...+ ....++.++.......-... ..+..... .
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~~---~-~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~ 145 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGTT---A-DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAY 145 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC---C-CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHH
Confidence 4789999999999999999987532 1 22233333 34456666666655542211 11111111 1
Q ss_pred HHHHHHhhh--CCceEEEEEeCC
Q 043039 269 LHQLINNRI--GGKKVLLVLDDV 289 (949)
Q Consensus 269 ~~~~l~~~l--~~~~~LlVlDdv 289 (949)
..-.+.+++ +++.+|+++||+
T Consensus 146 ~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 146 TATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHcCCCeEEEeccc
Confidence 111233333 589999999998
No 472
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.73 E-value=0.53 Score=48.63 Aligned_cols=52 Identities=17% Similarity=0.140 Sum_probs=31.1
Q ss_pred HHhhhCCceEEEEEeCCCC-CCcccHHHHHHhhhccCCCcEEEEEccchhhHh
Q 043039 273 INNRIGGKKVLLVLDDVWT-EDGNKWESFQRCLINAHRGSKILVTTRKETVAR 324 (949)
Q Consensus 273 l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 324 (949)
+.+.+-.++-++++|+.-. .|......+...+.....+..||++|.+.....
T Consensus 154 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~ 206 (242)
T TIGR03411 154 IGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVR 206 (242)
T ss_pred HHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHH
Confidence 3344555667999999743 333444445555544333456888888866554
No 473
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.71 E-value=0.15 Score=55.47 Aligned_cols=51 Identities=22% Similarity=0.284 Sum_probs=37.6
Q ss_pred CccccchhHHHHHHHHHccC--------CCCCCCCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 174 SEVCGRNEEKNALKGKLLSE--------TAEQPNAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..++|.++.++.+..++... ....+...+-|.++|++|+|||++|+.+...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999888887531 0001112467899999999999999998775
No 474
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=93.70 E-value=0.48 Score=48.78 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 27 SLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 49999999999999999999764
No 475
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=93.69 E-value=0.63 Score=55.35 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=20.0
Q ss_pred EEEEEEecCCChHHHHHHHHHc
Q 043039 202 QVISLVGMGGIGKTTLAQLAYN 223 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~ 223 (949)
..|+|+|..|+|||||++.+..
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999865
No 476
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.68 E-value=0.089 Score=47.79 Aligned_cols=41 Identities=24% Similarity=0.187 Sum_probs=28.4
Q ss_pred hHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCc
Q 043039 181 EEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDA 225 (949)
Q Consensus 181 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 225 (949)
++..++-+.|...- ..-.+|.+.|.-|+||||+++.+....
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34445555553221 123489999999999999999998753
No 477
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.66 E-value=0.74 Score=46.42 Aligned_cols=118 Identities=11% Similarity=0.190 Sum_probs=57.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCC---CC----cchHHHHHHH
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTP---DL----GELNTLHQLI 273 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~----~~~~~~~~~l 273 (949)
.+++.|.|+.|.||||+.+.+.... +..+-...+|..-.. -..+.+|...++..+. .. .+..++...+
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~-~la~~G~~v~a~~~~----~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il 105 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALIT-IMAQIGSFVPASSAT----LSIFDSVLTRMGASDSIQHGMSTFMVELSETSHIL 105 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHhCCCEEEcCceE----EeccceEEEEecCccccccccchHHHHHHHHHHHH
Confidence 4688999999999999998876521 111111111211000 0001111111111110 00 1223333333
Q ss_pred HhhhCCceEEEEEeCCCCCC----ccc-HHHHHHhhhccCCCcEEEEEccchhhHhhh
Q 043039 274 NNRIGGKKVLLVLDDVWTED----GNK-WESFQRCLINAHRGSKILVTTRKETVARMI 326 (949)
Q Consensus 274 ~~~l~~~~~LlVlDdv~~~~----~~~-~~~l~~~l~~~~~gs~iivTtr~~~v~~~~ 326 (949)
+. .+++-|+++|.....- ... ...+...+... .++.+|++|...+++...
T Consensus 106 ~~--~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 106 SN--CTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred Hh--CCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 32 2568999999974321 111 11233333332 578899999998876543
No 478
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.64 E-value=0.0064 Score=70.59 Aligned_cols=171 Identities=21% Similarity=0.208 Sum_probs=100.2
Q ss_pred ccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEecc-ccCCCCC----chhhcccCCcEEEEeccCCC
Q 043039 739 LEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFY-EVKARFP----NWILSLNKLRMLCLSFCKKC 813 (949)
Q Consensus 739 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~-~~~~~~p----~~~~~l~~L~~L~L~~~~~~ 813 (949)
...+++|+.|.+..+..... ..+......+++|+.|+++++ ......+ .....+++|+.|+++.|...
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~-------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~i 256 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITD-------DSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLV 256 (482)
T ss_pred HhhCchhhHhhhcccccCCh-------hhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhcc
Confidence 34478899998887754432 113445566788999999873 2222122 12235688899999988742
Q ss_pred CC--CCCCC-CCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceeeeccccccccccccccccccccccceeccccCc
Q 043039 814 EI--MPPLG-KLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCS 890 (949)
Q Consensus 814 ~~--~~~l~-~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 890 (949)
.+ +..+. .+++|++|.+.+|..+++.+-. .....+|.|++|++..|..+++...... ...+|+|+.|.+..++
T Consensus 257 sd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~---~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~~~ 332 (482)
T KOG1947|consen 257 TDIGLSALASRCPNLETLSLSNCSNLTDEGLV---SIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLSLN 332 (482)
T ss_pred CchhHHHHHhhCCCcceEccCCCCccchhHHH---HHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhhcC
Confidence 21 22222 4789999998888754333221 1223678899999988877654333222 3356766666554443
Q ss_pred ---cCcCCC--CCCCCC-CCcceEEEccCCChhHHh
Q 043039 891 ---KLKMLP--DQVLRS-TTLKKLEINDCPILEKSF 920 (949)
Q Consensus 891 ---~l~~lp--~~~~~l-~~L~~L~l~~c~~l~~~~ 920 (949)
.++.+- ...... ..+..+.+.+|++++...
T Consensus 333 ~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~ 368 (482)
T KOG1947|consen 333 GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLS 368 (482)
T ss_pred CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhh
Confidence 344221 111111 267777888888876643
No 479
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.57 E-value=0.77 Score=49.29 Aligned_cols=21 Identities=33% Similarity=0.408 Sum_probs=18.7
Q ss_pred EEEEecCCChHHHHHHHHHcC
Q 043039 204 ISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 204 i~I~G~~GiGKTtLa~~v~~~ 224 (949)
+++.|++|.||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999998865
No 480
>PRK15453 phosphoribulokinase; Provisional
Probab=93.55 E-value=0.27 Score=50.66 Aligned_cols=77 Identities=17% Similarity=0.052 Sum_probs=42.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCC--CHHHHHHHHH--Hhc--CCCC--CCCcchHHHHH
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPF--DVFRVWKAII--ENL--DGYT--PDLGELNTLHQ 271 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~--~~l--~~~~--~~~~~~~~~~~ 271 (949)
+..+|+|.|.+|+||||+|+.+.... ...-...+.++...-. +....-..+. +.- +-+. ++..+.+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if--~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~ 81 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF--RRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQ 81 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH--hhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 45799999999999999999887531 1111123344433322 2222222111 111 1122 56667777777
Q ss_pred HHHhhhC
Q 043039 272 LINNRIG 278 (949)
Q Consensus 272 ~l~~~l~ 278 (949)
.++.+.+
T Consensus 82 ~l~~l~~ 88 (290)
T PRK15453 82 LFREYGE 88 (290)
T ss_pred HHHHHhc
Confidence 7776654
No 481
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=93.55 E-value=1 Score=46.01 Aligned_cols=59 Identities=14% Similarity=0.213 Sum_probs=34.3
Q ss_pred HhhhCCceEEEEEeCCCC-CCcccHHHHHHhhhccCCCcEEEEEccchhhHhhhcCcceEeC
Q 043039 274 NNRIGGKKVLLVLDDVWT-EDGNKWESFQRCLINAHRGSKILVTTRKETVARMIGSTCVISI 334 (949)
Q Consensus 274 ~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l 334 (949)
.+.+-.++-++++|+--. -|......+...+.....+..||++|.+...... .++++.+
T Consensus 162 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~i~~l 221 (226)
T cd03248 162 ARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER--ADQILVL 221 (226)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh--CCEEEEe
Confidence 344455677999999743 2334444455555443334568888887665542 4455544
No 482
>PF13479 AAA_24: AAA domain
Probab=93.52 E-value=0.18 Score=50.76 Aligned_cols=20 Identities=45% Similarity=0.419 Sum_probs=18.0
Q ss_pred EEEEEEecCCChHHHHHHHH
Q 043039 202 QVISLVGMGGIGKTTLAQLA 221 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v 221 (949)
-.+.|+|.+|+||||+|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 35789999999999999887
No 483
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.50 E-value=0.25 Score=52.87 Aligned_cols=26 Identities=23% Similarity=0.357 Sum_probs=22.7
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 199 NAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 199 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
++..+|+|.|.+|+|||||+..+...
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999887664
No 484
>PRK14528 adenylate kinase; Provisional
Probab=93.48 E-value=0.16 Score=49.89 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
+.|.|.|++|+||||+|+.+...
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~ 24 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCER 24 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999998764
No 485
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.48 E-value=0.045 Score=54.60 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
+|+|.|..|+||||+|+.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 486
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.45 E-value=0.047 Score=53.22 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 487
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.44 E-value=0.34 Score=49.92 Aligned_cols=88 Identities=17% Similarity=0.156 Sum_probs=54.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcCccc--ccccceEEEEEeCCC-CCHHHHHHHHHHhcCCC-------CCCCcchH----
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADV--SNNFNVMIWVCVSDP-FDVFRVWKAIIENLDGY-------TPDLGELN---- 267 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~---- 267 (949)
+.++|.|-.|+|||+|+..+.++... +++-+.++++.+.+. ..+.+++.++...=... ..+.....
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 46799999999999999888876321 223467888888664 45666666665531111 01111111
Q ss_pred -HHHHHHHhhhC---CceEEEEEeCC
Q 043039 268 -TLHQLINNRIG---GKKVLLVLDDV 289 (949)
Q Consensus 268 -~~~~~l~~~l~---~~~~LlVlDdv 289 (949)
...-.+.++++ ++++|+++||+
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 11123445553 68999999998
No 488
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.44 E-value=1.8 Score=43.20 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|.|..|.|||||++.+...
T Consensus 32 ~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 32 ELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 48999999999999999999875
No 489
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.40 E-value=0.057 Score=52.86 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|+||||+++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998774
No 490
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.39 E-value=0.01 Score=68.92 Aligned_cols=173 Identities=24% Similarity=0.262 Sum_probs=101.0
Q ss_pred ceEEccCCCCCChhhhhhhcccCCCCCCeEEEEec-CCCCcchhhhcHHHHhhcCCCCCCcCceEEeccc-cCCCCCchh
Q 043039 719 SLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFD-KEEEEDEDEVNHQAIIEALRPHPNLESLQISFYE-VKARFPNWI 796 (949)
Q Consensus 719 ~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~~~p~~~ 796 (949)
.+.+..+..+.... ..+....+++|+.|+++.+ ..... ...........+++|+.|+++++. ++...-..+
T Consensus 192 ~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 192 RLSLSGCSKITDDS--LDALALKCPNLEELDLSGCCLLITL-----SPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred HhhhcccccCChhh--HHHHHhhCchhheecccCccccccc-----chhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 34444454444322 3455678899999999863 11111 011122244556899999999988 443233333
Q ss_pred h-cccCCcEEEEeccCCCC--CCCC-CCCCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceeeeccccccccccccc
Q 043039 797 L-SLNKLRMLCLSFCKKCE--IMPP-LGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEWEFIE 872 (949)
Q Consensus 797 ~-~l~~L~~L~L~~~~~~~--~~~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~ 872 (949)
. .+++|+.|.+.+|.... .+.. ...+++|++|+|++|..+.+.+ +... ...+|+|+.|.+..+..
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~--l~~~-~~~c~~l~~l~~~~~~~-------- 333 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSG--LEAL-LKNCPNLRELKLLSLNG-------- 333 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHH--HHHH-HHhCcchhhhhhhhcCC--------
Confidence 3 48899999988887422 1222 4568999999999988662221 1111 22466666666555432
Q ss_pred cccccccccceeccccCccCc--CC-CCCCCCCCCcceEEEccCC
Q 043039 873 ENITIMPQLNSLAIRDCSKLK--ML-PDQVLRSTTLKKLEINDCP 914 (949)
Q Consensus 873 ~~~~~l~~L~~L~l~~c~~l~--~l-p~~~~~l~~L~~L~l~~c~ 914 (949)
++.++.+.+..|.... .+ ...+.+++.|+.+.+..|.
T Consensus 334 -----c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 334 -----CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred -----CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 4556666665554433 11 1234566777788888777
No 491
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.38 E-value=0.75 Score=48.46 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|..|.|||||++.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (274)
T PRK13647 32 SKTALLGPNGAGKSTLLLHLNGI 54 (274)
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 59999999999999999999764
No 492
>COG4240 Predicted kinase [General function prediction only]
Probab=93.37 E-value=0.24 Score=48.17 Aligned_cols=83 Identities=13% Similarity=0.109 Sum_probs=55.9
Q ss_pred CCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcC-----CCCCCCcchHHHHHH
Q 043039 198 PNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLD-----GYTPDLGELNTLHQL 272 (949)
Q Consensus 198 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-----~~~~~~~~~~~~~~~ 272 (949)
.+.+-+++|.|+-|.||||++..+++....++- ..++..+..+-+-...-...++++.. ...+...|..-..+.
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 345789999999999999999999986433332 46666666665555555556666642 123445566667777
Q ss_pred HHhhhCCce
Q 043039 273 INNRIGGKK 281 (949)
Q Consensus 273 l~~~l~~~~ 281 (949)
+....+++.
T Consensus 126 Lnai~~g~~ 134 (300)
T COG4240 126 LNAIARGGP 134 (300)
T ss_pred HHHHhcCCC
Confidence 777766663
No 493
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.37 E-value=1.1 Score=46.97 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|..|.|||||++.++.-
T Consensus 31 e~~~IvG~nGsGKSTLl~~L~gl 53 (275)
T cd03289 31 QRVGLLGRTGSGKSTLLSAFLRL 53 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHhhh
Confidence 48999999999999999999864
No 494
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.35 E-value=0.16 Score=52.18 Aligned_cols=84 Identities=24% Similarity=0.239 Sum_probs=47.9
Q ss_pred EEEEEEecCCChHHHHH-HHHHcCcccccccceE-EEEEeCCC-CCHHHHHHHHHHhcCCC-------CCCCcchHH---
Q 043039 202 QVISLVGMGGIGKTTLA-QLAYNDADVSNNFNVM-IWVCVSDP-FDVFRVWKAIIENLDGY-------TPDLGELNT--- 268 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~-~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 268 (949)
+.++|.|.+|+|||+|| ..+.+.. +-+.+ +++-+.+. ..+.++.+++...-... ..+......
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 46899999999999996 6665531 22333 56666554 45666666665431110 111111111
Q ss_pred --HHHHHHhhh--CCceEEEEEeCC
Q 043039 269 --LHQLINNRI--GGKKVLLVLDDV 289 (949)
Q Consensus 269 --~~~~l~~~l--~~~~~LlVlDdv 289 (949)
..-.+.+++ +++.+|+|+||+
T Consensus 146 ~~~a~aiAE~fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 146 PYTGCAMGEYFMDNGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcCh
Confidence 111223333 488999999998
No 495
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=1.7 Score=47.44 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=20.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
|--.++|++|.|||+++.++++.
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~ 258 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANY 258 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhh
Confidence 34568999999999999999985
No 496
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.32 E-value=0.049 Score=53.55 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
+|.|+|++|+||||+|+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999874
No 497
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.31 E-value=0.098 Score=48.48 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=27.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSD 241 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 241 (949)
++|.|+|..|+|||||++.+.+... +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~-~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK-RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH-HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh-HcCCceEEEEEccC
Confidence 4799999999999999999988632 23455555665554
No 498
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=93.30 E-value=0.97 Score=45.54 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=21.2
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|.|||||.+.+..-
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 499
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.30 E-value=0.075 Score=49.11 Aligned_cols=24 Identities=33% Similarity=0.685 Sum_probs=21.3
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.++++|+|.+|+||||+.+.+-..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 579999999999999999887664
No 500
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.28 E-value=0.32 Score=54.06 Aligned_cols=88 Identities=19% Similarity=0.169 Sum_probs=53.3
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCC-CCCHHHHHHHHHHhcCCC-------CCCCcchH-----
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSD-PFDVFRVWKAIIENLDGY-------TPDLGELN----- 267 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 267 (949)
-+.++|.|.+|+|||||+..+....... +=+.++++-+.+ ...+.+++.++...=... ..+.....
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 3468999999999999998876542211 114566777754 445677777776542111 11111111
Q ss_pred HHHHHHHhhh---CCceEEEEEeCC
Q 043039 268 TLHQLINNRI---GGKKVLLVLDDV 289 (949)
Q Consensus 268 ~~~~~l~~~l---~~~~~LlVlDdv 289 (949)
...-.+.+++ +++++|+++|++
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecch
Confidence 1122345555 679999999998
Done!