Query 043039
Match_columns 949
No_of_seqs 477 out of 4649
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 21:29:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043039.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043039hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.6E-45 8.8E-50 426.3 24.6 318 175-522 129-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 7E-37 2.4E-41 355.8 19.4 285 175-513 129-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.7E-35 5.8E-40 383.5 22.3 313 170-520 120-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.4E-32 4.9E-37 325.0 24.7 306 172-517 122-449 (591)
5 3rgz_A Protein brassinosteroid 99.9 1.9E-27 6.7E-32 289.2 15.0 374 541-938 269-766 (768)
6 4ecn_A Leucine-rich repeat pro 99.9 2.9E-25 1E-29 267.3 21.2 348 538-916 445-840 (876)
7 2z7x_B TOLL-like receptor 1, v 99.9 8.2E-25 2.8E-29 254.9 20.2 344 541-915 21-480 (520)
8 4eco_A Uncharacterized protein 99.9 5E-25 1.7E-29 261.6 18.4 346 539-916 204-600 (636)
9 4ecn_A Leucine-rich repeat pro 99.9 8.3E-25 2.8E-29 263.4 19.6 328 556-915 440-818 (876)
10 4eco_A Uncharacterized protein 99.9 6.3E-25 2.2E-29 260.7 16.1 324 556-915 198-578 (636)
11 3vq2_A TLR4, TOLL-like recepto 99.9 1.4E-24 4.9E-29 258.1 19.0 133 541-676 32-169 (606)
12 3rgz_A Protein brassinosteroid 99.9 6.4E-25 2.2E-29 267.0 14.4 344 539-915 198-550 (768)
13 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4E-24 1.4E-28 251.2 20.7 152 741-915 351-509 (562)
14 4fmz_A Internalin; leucine ric 99.9 8.2E-24 2.8E-28 232.7 20.7 304 539-915 42-345 (347)
15 3v47_A TOLL-like receptor 5B a 99.9 3.2E-24 1.1E-28 245.5 18.1 361 541-915 30-407 (455)
16 3vq2_A TLR4, TOLL-like recepto 99.9 4.6E-24 1.6E-28 253.7 19.6 136 771-915 419-557 (606)
17 3o6n_A APL1; leucine-rich repe 99.9 1.6E-23 5.6E-28 234.1 22.1 303 563-916 44-352 (390)
18 1o6v_A Internalin A; bacterial 99.9 2.2E-23 7.4E-28 238.7 23.6 322 539-915 66-387 (466)
19 2id5_A Lingo-1, leucine rich r 99.9 1.5E-23 5.1E-28 241.3 20.2 313 544-915 14-332 (477)
20 3oja_B Anopheles plasmodium-re 99.9 2.7E-23 9.2E-28 245.4 21.6 303 562-915 49-357 (597)
21 2z63_A TOLL-like receptor 4, v 99.9 1.2E-23 4E-28 248.5 17.6 134 772-914 392-529 (570)
22 3t6q_A CD180 antigen; protein- 99.9 4.1E-23 1.4E-27 245.6 22.0 235 656-914 274-511 (606)
23 1ziw_A TOLL-like receptor 3; i 99.9 4.3E-23 1.5E-27 248.8 21.1 149 541-692 25-180 (680)
24 2z63_A TOLL-like receptor 4, v 99.9 3E-23 1E-27 245.0 18.1 353 541-915 28-506 (570)
25 3t6q_A CD180 antigen; protein- 99.9 1E-22 3.4E-27 242.2 21.9 146 541-690 33-186 (606)
26 3j0a_A TOLL-like receptor 5; m 99.9 3.9E-22 1.3E-26 245.2 27.3 280 541-834 24-373 (844)
27 2z81_A CD282 antigen, TOLL-lik 99.9 6.3E-23 2.2E-27 240.9 18.3 357 541-915 26-509 (549)
28 3bz5_A Internalin-J, INLJ; leu 99.9 4.4E-22 1.5E-26 225.6 24.5 299 559-914 37-350 (457)
29 3j0a_A TOLL-like receptor 5; m 99.9 4.4E-22 1.5E-26 244.7 23.5 142 546-692 9-157 (844)
30 3o6n_A APL1; leucine-rich repe 99.9 6.2E-22 2.1E-26 221.2 20.4 284 585-915 43-330 (390)
31 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.8E-21 6.2E-26 228.5 24.7 351 541-915 31-485 (562)
32 2z7x_B TOLL-like receptor 1, v 99.9 6.7E-22 2.3E-26 230.3 20.3 349 544-915 3-456 (520)
33 4fmz_A Internalin; leucine ric 99.9 7.8E-22 2.7E-26 216.9 19.6 285 559-915 39-323 (347)
34 1o6v_A Internalin A; bacterial 99.9 2.1E-21 7.3E-26 222.1 23.8 319 524-898 75-393 (466)
35 2id5_A Lingo-1, leucine rich r 99.9 6.9E-22 2.4E-26 227.4 19.6 293 541-890 32-331 (477)
36 3v47_A TOLL-like receptor 5B a 99.9 8.7E-22 3E-26 225.3 19.5 335 537-896 50-412 (455)
37 1ziw_A TOLL-like receptor 3; i 99.9 5.1E-21 1.7E-25 230.7 26.3 131 777-914 382-515 (680)
38 4fcg_A Uncharacterized protein 99.9 3E-22 1E-26 217.1 13.6 220 563-831 80-309 (328)
39 3oja_B Anopheles plasmodium-re 99.9 1.5E-21 5E-26 230.5 20.2 284 585-915 49-336 (597)
40 2ft3_A Biglycan; proteoglycan, 99.9 4.4E-21 1.5E-25 209.1 22.0 236 542-834 34-275 (332)
41 2z81_A CD282 antigen, TOLL-lik 99.9 7.9E-22 2.7E-26 231.5 16.6 137 550-692 14-157 (549)
42 1xku_A Decorin; proteoglycan, 99.9 4.3E-21 1.5E-25 209.1 20.9 237 542-834 32-274 (330)
43 3bz5_A Internalin-J, INLJ; leu 99.9 5.9E-21 2E-25 216.4 21.0 302 539-896 40-355 (457)
44 4fcg_A Uncharacterized protein 99.9 3.4E-21 1.2E-25 208.8 16.6 231 585-913 79-311 (328)
45 1ogq_A PGIP-2, polygalacturona 99.9 1.2E-21 4E-26 211.2 12.5 245 565-834 51-302 (313)
46 1ogq_A PGIP-2, polygalacturona 99.9 1.5E-21 5.1E-26 210.4 12.2 252 587-896 50-308 (313)
47 4g8a_A TOLL-like receptor 4; l 99.9 6.4E-21 2.2E-25 228.4 18.8 363 541-915 52-579 (635)
48 2ft3_A Biglycan; proteoglycan, 99.8 5.8E-21 2E-25 208.2 16.3 287 564-914 33-331 (332)
49 1xku_A Decorin; proteoglycan, 99.8 3.4E-20 1.2E-24 202.0 18.4 287 564-913 31-329 (330)
50 2z80_A TOLL-like receptor 2, v 99.8 6E-20 2.1E-24 202.0 16.2 275 561-915 28-313 (353)
51 1jl5_A Outer protein YOPM; leu 99.8 4.1E-19 1.4E-23 201.1 22.4 302 541-915 91-408 (454)
52 3g06_A SSPH2 (leucine-rich rep 99.8 7.1E-19 2.4E-23 205.0 22.6 118 542-677 41-158 (622)
53 1jl5_A Outer protein YOPM; leu 99.8 1.7E-18 5.9E-23 195.9 23.9 299 541-915 71-369 (454)
54 4g8a_A TOLL-like receptor 4; l 99.8 2.5E-19 8.5E-24 214.5 15.3 135 552-692 42-182 (635)
55 2z66_A Variable lymphocyte rec 99.8 5.2E-19 1.8E-23 190.4 14.4 243 545-834 11-259 (306)
56 3g06_A SSPH2 (leucine-rich rep 99.8 9.2E-18 3.1E-22 195.7 24.1 258 564-916 40-297 (622)
57 2z66_A Variable lymphocyte rec 99.8 1.4E-18 4.8E-23 187.0 15.5 242 567-915 10-260 (306)
58 3zyi_A Leucine-rich repeat-con 99.8 2.7E-18 9.3E-23 195.5 18.2 239 543-834 56-301 (452)
59 3zyj_A Leucine-rich repeat-con 99.8 4.7E-18 1.6E-22 192.8 18.0 239 543-834 45-290 (440)
60 1ozn_A Reticulon 4 receptor; N 99.8 2.2E-18 7.7E-23 183.2 14.0 217 568-834 15-236 (285)
61 2z80_A TOLL-like receptor 2, v 99.8 2.8E-18 9.5E-23 188.7 14.5 264 547-834 37-312 (353)
62 3o53_A Protein LRIM1, AGAP0063 99.8 5.1E-19 1.8E-23 191.1 7.9 272 561-921 31-304 (317)
63 1ozn_A Reticulon 4 receptor; N 99.8 2.1E-18 7.1E-23 183.5 12.3 221 544-814 14-239 (285)
64 1z7x_W Ribonuclease inhibitor; 99.7 6.1E-21 2.1E-25 218.7 -10.1 360 541-916 3-411 (461)
65 3zyj_A Leucine-rich repeat-con 99.7 2.4E-17 8.1E-22 187.0 19.3 194 566-834 45-242 (440)
66 3zyi_A Leucine-rich repeat-con 99.7 2.3E-17 7.9E-22 187.8 18.4 241 566-914 56-301 (452)
67 1wwl_A Monocyte differentiatio 99.7 2.6E-18 8.9E-23 185.1 7.2 202 561-834 40-264 (312)
68 3oja_A Leucine-rich immune mol 99.7 1.8E-17 6.2E-22 189.6 13.6 128 772-910 140-269 (487)
69 3o53_A Protein LRIM1, AGAP0063 99.7 1E-17 3.4E-22 180.9 10.0 243 583-916 30-275 (317)
70 1wwl_A Monocyte differentiatio 99.7 1.9E-18 6.4E-23 186.2 3.6 229 556-834 57-307 (312)
71 3oja_A Leucine-rich immune mol 99.7 2.7E-17 9.3E-22 188.1 12.6 215 562-834 32-248 (487)
72 3ogk_B Coronatine-insensitive 99.7 1.2E-18 4E-23 206.6 0.7 347 543-914 140-524 (592)
73 1z7x_W Ribonuclease inhibitor; 99.7 1.6E-19 5.3E-24 207.0 -8.5 360 540-915 27-439 (461)
74 3ogk_B Coronatine-insensitive 99.7 4.5E-18 1.5E-22 201.5 2.9 351 540-914 111-499 (592)
75 1p9a_G Platelet glycoprotein I 99.7 3.6E-16 1.2E-20 165.9 17.1 125 560-691 6-132 (290)
76 2o6q_A Variable lymphocyte rec 99.7 9.5E-16 3.2E-20 161.3 18.1 195 565-834 17-216 (270)
77 1h6u_A Internalin H; cell adhe 99.7 2.6E-16 8.8E-21 168.8 13.9 120 561-689 38-157 (308)
78 2z62_A TOLL-like receptor 4, v 99.7 4.2E-16 1.4E-20 164.8 13.1 200 564-834 28-235 (276)
79 1p9a_G Platelet glycoprotein I 99.6 1.2E-15 4E-20 161.9 15.9 144 540-690 9-155 (290)
80 2z62_A TOLL-like receptor 4, v 99.6 1E-15 3.4E-20 161.8 15.3 202 541-813 28-237 (276)
81 3rfs_A Internalin B, repeat mo 99.6 9.9E-16 3.4E-20 161.3 13.6 109 562-676 39-149 (272)
82 2o6q_A Variable lymphocyte rec 99.6 3.1E-15 1.1E-19 157.3 16.7 143 542-690 17-164 (270)
83 1h6u_A Internalin H; cell adhe 99.6 1.4E-15 4.9E-20 163.0 14.0 143 539-691 39-181 (308)
84 1w5s_A Origin recognition comp 99.6 6.9E-15 2.4E-19 165.5 20.3 300 173-493 21-372 (412)
85 2xwt_C Thyrotropin receptor; s 99.6 1.3E-15 4.3E-20 157.2 11.7 94 588-685 32-129 (239)
86 2qen_A Walker-type ATPase; unk 99.6 4E-14 1.4E-18 155.4 24.2 293 172-513 10-348 (350)
87 2p1m_B Transport inhibitor res 99.6 3.7E-17 1.3E-21 193.8 -0.4 361 541-918 105-521 (594)
88 2ast_B S-phase kinase-associat 99.6 1.5E-16 5E-21 173.8 4.0 100 566-670 49-152 (336)
89 3rfs_A Internalin B, repeat mo 99.6 5.8E-15 2E-19 155.4 15.6 193 566-834 21-216 (272)
90 2xwt_C Thyrotropin receptor; s 99.6 4.2E-15 1.4E-19 153.3 13.4 131 553-690 23-163 (239)
91 2ca6_A RAN GTPase-activating p 99.6 6.2E-17 2.1E-21 180.3 -1.2 242 555-834 23-314 (386)
92 3qfl_A MLA10; coiled-coil, (CC 99.6 1.2E-15 4.2E-20 134.1 7.1 81 4-88 1-83 (115)
93 4glp_A Monocyte differentiatio 99.6 7.3E-15 2.5E-19 158.0 14.2 225 562-834 62-305 (310)
94 2fna_A Conserved hypothetical 99.5 4.7E-13 1.6E-17 147.3 24.9 291 172-512 11-355 (357)
95 4ay9_X Follicle-stimulating ho 99.5 4.6E-14 1.6E-18 154.4 15.1 106 567-677 12-121 (350)
96 4ay9_X Follicle-stimulating ho 99.5 9.8E-14 3.4E-18 151.8 17.4 236 590-888 12-255 (350)
97 2ca6_A RAN GTPase-activating p 99.5 3.1E-15 1.1E-19 166.5 5.0 251 541-832 32-339 (386)
98 3goz_A Leucine-rich repeat-con 99.5 3.5E-15 1.2E-19 164.3 3.5 226 569-834 3-264 (362)
99 3m19_A Variable lymphocyte rec 99.5 1.2E-13 4.3E-18 143.3 14.8 105 566-676 16-123 (251)
100 1h6t_A Internalin B; cell adhe 99.5 1E-13 3.5E-18 147.1 14.1 106 562-675 44-149 (291)
101 3m19_A Variable lymphocyte rec 99.5 2.1E-13 7.1E-18 141.6 15.9 174 587-834 14-190 (251)
102 4glp_A Monocyte differentiatio 99.5 7E-14 2.4E-18 150.2 12.5 203 562-814 89-308 (310)
103 2p1m_B Transport inhibitor res 99.5 1.1E-15 3.7E-20 181.1 -1.8 322 562-914 182-542 (594)
104 2ast_B S-phase kinase-associat 99.5 1E-14 3.5E-19 159.1 5.8 146 542-689 71-228 (336)
105 1h6t_A Internalin B; cell adhe 99.5 5E-14 1.7E-18 149.5 10.9 183 570-812 30-212 (291)
106 1m9s_A Internalin B; cell inva 99.5 7.8E-14 2.7E-18 162.4 12.2 187 568-814 25-211 (605)
107 4ezg_A Putative uncharacterize 99.5 1.9E-13 6.5E-18 135.9 13.3 148 538-692 41-190 (197)
108 3cvr_A Invasion plasmid antige 99.5 1.1E-13 3.8E-18 159.2 13.2 183 565-817 60-247 (571)
109 3cvr_A Invasion plasmid antige 99.5 1.1E-13 3.9E-18 159.1 12.9 197 541-801 59-255 (571)
110 1m9s_A Internalin B; cell inva 99.5 1.4E-13 4.9E-18 160.2 13.1 175 560-793 39-213 (605)
111 3goz_A Leucine-rich repeat-con 99.5 1.2E-14 4.2E-19 159.9 3.4 237 557-834 15-295 (362)
112 1xeu_A Internalin C; cellular 99.4 8.6E-14 3E-18 145.2 7.4 57 775-834 127-183 (263)
113 2o6s_A Variable lymphocyte rec 99.4 6.5E-13 2.2E-17 133.5 11.9 109 564-676 28-140 (208)
114 3e6j_A Variable lymphocyte rec 99.4 9.8E-13 3.4E-17 134.1 12.8 143 545-693 23-169 (229)
115 1fnn_A CDC6P, cell division co 99.4 1.2E-11 4.1E-16 137.8 22.6 298 174-494 17-353 (389)
116 2v1u_A Cell division control p 99.4 6.3E-11 2.1E-15 131.8 28.1 296 174-493 19-352 (387)
117 2v9t_B SLIT homolog 2 protein 99.4 9.4E-13 3.2E-17 133.2 12.0 143 545-692 15-161 (220)
118 1dce_A Protein (RAB geranylger 99.4 4.6E-15 1.6E-19 171.8 -5.8 196 561-829 346-566 (567)
119 2qby_B CDC6 homolog 3, cell di 99.4 3.3E-11 1.1E-15 133.8 24.5 295 174-494 20-341 (384)
120 2v70_A SLIT-2, SLIT homolog 2 99.4 2.1E-12 7.2E-17 130.7 12.6 144 544-692 14-162 (220)
121 2je0_A Acidic leucine-rich nuc 99.4 6.8E-13 2.3E-17 125.4 7.7 123 563-690 16-147 (149)
122 2ell_A Acidic leucine-rich nuc 99.4 1.1E-12 3.8E-17 126.7 9.4 125 563-692 23-156 (168)
123 1a9n_A U2A', U2A'; complex (nu 99.4 1.3E-12 4.3E-17 127.3 9.4 129 559-692 14-149 (176)
124 2ell_A Acidic leucine-rich nuc 99.4 1.3E-12 4.4E-17 126.3 9.4 133 541-678 24-165 (168)
125 4ezg_A Putative uncharacterize 99.3 3.2E-12 1.1E-16 127.0 11.5 126 561-692 41-168 (197)
126 2o6s_A Variable lymphocyte rec 99.3 2.7E-12 9.2E-17 128.9 10.6 119 567-691 10-132 (208)
127 1xeu_A Internalin C; cellular 99.3 6.4E-12 2.2E-16 130.9 12.9 142 540-692 40-181 (263)
128 2v9t_B SLIT homolog 2 protein 99.3 7.3E-12 2.5E-16 126.7 12.0 81 591-676 15-96 (220)
129 4b8c_D Glucose-repressible alc 99.3 4.7E-12 1.6E-16 151.5 11.1 147 542-692 174-325 (727)
130 2qby_A CDC6 homolog 1, cell di 99.3 3E-10 1E-14 126.3 24.8 298 173-493 19-349 (386)
131 1njg_A DNA polymerase III subu 99.3 9.5E-11 3.3E-15 121.2 18.4 198 174-387 23-231 (250)
132 2je0_A Acidic leucine-rich nuc 99.2 7.1E-12 2.4E-16 118.3 7.5 123 541-668 17-148 (149)
133 3e6j_A Variable lymphocyte rec 99.2 3E-11 1E-15 123.1 12.3 130 541-674 40-173 (229)
134 1dce_A Protein (RAB geranylger 99.2 1.6E-11 5.4E-16 142.2 11.5 119 565-689 442-566 (567)
135 2xot_A Amphoterin-induced prot 99.2 1.2E-11 4E-16 135.8 9.8 174 567-812 21-201 (361)
136 2v70_A SLIT-2, SLIT homolog 2 99.2 4.4E-11 1.5E-15 120.9 12.2 129 541-673 32-166 (220)
137 2chg_A Replication factor C sm 99.2 3.8E-10 1.3E-14 114.7 19.1 187 174-385 17-205 (226)
138 1w8a_A SLIT protein; signaling 99.2 4.1E-11 1.4E-15 118.3 10.3 123 546-673 13-139 (192)
139 1a9n_A U2A', U2A'; complex (nu 99.2 2.1E-11 7E-16 118.7 7.8 128 540-673 18-153 (176)
140 2wfh_A SLIT homolog 2 protein 99.2 6.2E-11 2.1E-15 116.9 11.2 117 568-690 14-133 (193)
141 2wfh_A SLIT homolog 2 protein 99.2 7.5E-11 2.6E-15 116.3 11.4 123 545-673 14-139 (193)
142 4b8c_D Glucose-repressible alc 99.2 2E-11 6.8E-16 146.1 8.5 115 557-675 217-331 (727)
143 1w8a_A SLIT protein; signaling 99.2 6.1E-11 2.1E-15 117.0 10.1 120 567-692 11-135 (192)
144 2xot_A Amphoterin-induced prot 99.2 7.5E-11 2.5E-15 129.4 11.0 142 545-691 22-171 (361)
145 1ds9_A Outer arm dynein; leuci 99.1 9E-13 3.1E-17 131.2 -4.6 141 543-689 25-180 (198)
146 2o6r_A Variable lymphocyte rec 99.0 7.5E-10 2.6E-14 107.7 11.6 106 564-673 28-137 (177)
147 2r9u_A Variable lymphocyte rec 99.0 6E-10 2E-14 107.7 9.9 107 567-679 15-124 (174)
148 2o6r_A Variable lymphocyte rec 99.0 1.3E-09 4.4E-14 106.1 11.4 121 566-692 9-133 (177)
149 1sxj_B Activator 1 37 kDa subu 99.0 3.6E-09 1.2E-13 114.2 15.3 186 174-384 21-210 (323)
150 1ds9_A Outer arm dynein; leuci 99.0 2.9E-11 1E-15 120.2 -1.8 123 564-692 23-149 (198)
151 3g39_A Variable lymphocyte rec 99.0 1.5E-09 5.2E-14 104.5 9.8 105 566-676 11-118 (170)
152 1hqc_A RUVB; extended AAA-ATPa 99.0 5.9E-09 2E-13 112.5 15.0 267 174-491 12-324 (324)
153 3sb4_A Hypothetical leucine ri 98.9 1.9E-09 6.4E-14 116.6 10.6 287 563-909 24-327 (329)
154 2r9u_A Variable lymphocyte rec 98.9 3.3E-09 1.1E-13 102.4 9.4 110 544-659 15-127 (174)
155 3te6_A Regulatory protein SIR3 98.9 3.6E-08 1.2E-12 103.3 17.3 208 174-387 20-283 (318)
156 3g39_A Variable lymphocyte rec 98.8 7.5E-09 2.6E-13 99.5 9.3 100 588-693 10-112 (170)
157 1iqp_A RFCS; clamp loader, ext 98.8 2E-08 7E-13 108.4 12.9 183 174-385 25-213 (327)
158 1jr3_A DNA polymerase III subu 98.7 2.4E-07 8.1E-12 102.1 17.7 195 174-384 16-221 (373)
159 3sb4_A Hypothetical leucine ri 98.7 8.3E-08 2.8E-12 103.5 12.1 289 540-885 24-327 (329)
160 2ifg_A High affinity nerve gro 98.6 6.1E-08 2.1E-12 105.6 9.7 100 569-673 13-116 (347)
161 2chq_A Replication factor C sm 98.6 2.2E-07 7.6E-12 99.8 13.4 182 174-384 17-204 (319)
162 3bos_A Putative DNA replicatio 98.5 4.1E-07 1.4E-11 93.3 11.6 174 174-384 28-217 (242)
163 3pfi_A Holliday junction ATP-d 98.5 4.9E-06 1.7E-10 90.0 19.9 179 173-384 28-227 (338)
164 4fdw_A Leucine rich hypothetic 98.5 2.8E-06 9.7E-11 93.6 18.1 125 777-914 249-381 (401)
165 1sxj_D Activator 1 41 kDa subu 98.5 1.7E-06 5.9E-11 94.3 15.8 194 174-383 37-234 (353)
166 1jbk_A CLPB protein; beta barr 98.5 4.9E-07 1.7E-11 88.9 10.0 151 174-346 22-194 (195)
167 2ifg_A High affinity nerve gro 98.4 3.2E-07 1.1E-11 99.9 8.9 97 591-692 12-112 (347)
168 4fdw_A Leucine rich hypothetic 98.4 9.3E-06 3.2E-10 89.4 20.0 209 564-831 113-331 (401)
169 1sxj_A Activator 1 95 kDa subu 98.3 5.5E-06 1.9E-10 94.6 16.7 197 174-384 39-253 (516)
170 2z4s_A Chromosomal replication 98.3 4.2E-06 1.4E-10 93.3 15.2 163 201-382 130-304 (440)
171 1sxj_E Activator 1 40 kDa subu 98.3 4.3E-06 1.5E-10 91.1 14.1 196 174-384 14-237 (354)
172 2qz4_A Paraplegin; AAA+, SPG7, 98.3 1.4E-05 4.8E-10 82.8 17.0 187 174-383 6-221 (262)
173 3u61_B DNA polymerase accessor 98.3 6.9E-06 2.4E-10 88.1 14.9 177 174-380 26-212 (324)
174 3un9_A NLR family member X1; l 98.3 1.8E-07 6E-12 102.2 2.2 106 564-673 72-196 (372)
175 2ra8_A Uncharacterized protein 98.3 5.9E-08 2E-12 104.9 -1.7 141 771-915 167-319 (362)
176 3h4m_A Proteasome-activating n 98.3 9.7E-06 3.3E-10 85.2 15.3 184 173-382 16-229 (285)
177 4fs7_A Uncharacterized protein 98.3 2.5E-05 8.5E-10 86.3 19.2 305 558-912 65-375 (394)
178 3pvs_A Replication-associated 98.3 1.2E-05 4.1E-10 89.3 16.2 179 174-384 26-215 (447)
179 3uk6_A RUVB-like 2; hexameric 98.2 1.1E-05 3.6E-10 88.5 14.4 198 174-383 44-302 (368)
180 1a5t_A Delta prime, HOLB; zinc 98.2 2.6E-05 9E-10 83.7 16.1 173 180-384 8-205 (334)
181 4fs7_A Uncharacterized protein 98.1 3.4E-05 1.2E-09 85.3 17.0 318 539-908 69-393 (394)
182 3syl_A Protein CBBX; photosynt 98.1 2.7E-05 9.1E-10 82.9 15.6 160 175-352 32-219 (309)
183 1sxj_C Activator 1 40 kDa subu 98.1 2.7E-05 9.3E-10 84.0 15.2 176 174-381 25-209 (340)
184 2ra8_A Uncharacterized protein 98.1 1.9E-06 6.4E-11 93.2 5.9 67 741-813 250-320 (362)
185 1l8q_A Chromosomal replication 98.1 3.9E-05 1.3E-09 82.2 16.2 170 182-379 22-203 (324)
186 3un9_A NLR family member X1; l 98.1 7.9E-07 2.7E-11 97.0 2.5 124 564-691 101-247 (372)
187 3n70_A Transport activator; si 98.0 8.3E-06 2.8E-10 75.7 8.0 113 175-319 2-115 (145)
188 3e4g_A ATP synthase subunit S, 98.0 5.1E-07 1.8E-11 85.2 -0.4 39 879-918 114-154 (176)
189 2p65_A Hypothetical protein PF 98.0 6.9E-06 2.4E-10 80.1 7.5 45 174-224 22-66 (187)
190 1d2n_A N-ethylmaleimide-sensit 98.0 5.8E-05 2E-09 78.5 14.7 171 175-376 34-229 (272)
191 3ec2_A DNA replication protein 97.9 1.5E-05 5E-10 77.2 8.0 121 179-319 19-142 (180)
192 1xwi_A SKD1 protein; VPS4B, AA 97.9 0.00041 1.4E-08 73.8 19.9 189 174-385 12-224 (322)
193 3eie_A Vacuolar protein sortin 97.9 0.00015 5.2E-09 77.3 16.6 186 174-384 18-228 (322)
194 3d8b_A Fidgetin-like protein 1 97.9 0.00014 4.8E-09 78.7 16.3 187 174-385 84-296 (357)
195 3b9p_A CG5977-PA, isoform A; A 97.9 0.00053 1.8E-08 72.2 20.4 186 174-384 21-233 (297)
196 1io0_A Tropomodulin; LRR prote 97.9 8.9E-06 3E-10 79.0 5.6 114 559-673 31-164 (185)
197 2qp9_X Vacuolar protein sortin 97.9 0.00017 5.8E-09 77.9 15.7 187 174-384 51-261 (355)
198 2gno_A DNA polymerase III, gam 97.9 7.7E-05 2.6E-09 78.3 12.1 148 178-350 1-152 (305)
199 3rw6_A Nuclear RNA export fact 97.8 4.7E-06 1.6E-10 85.1 2.4 82 584-666 167-257 (267)
200 2w58_A DNAI, primosome compone 97.8 2.3E-05 7.9E-10 77.4 6.9 119 181-319 36-158 (202)
201 3co5_A Putative two-component 97.8 2.3E-05 7.8E-10 72.4 6.0 110 175-319 5-115 (143)
202 4gt6_A Cell surface protein; l 97.8 0.00062 2.1E-08 75.0 18.6 106 559-668 58-168 (394)
203 3e4g_A ATP synthase subunit S, 97.8 2.4E-06 8.3E-11 80.6 -0.9 91 801-893 62-153 (176)
204 1in4_A RUVB, holliday junction 97.8 0.0016 5.6E-08 69.6 20.9 177 174-383 25-222 (334)
205 3cf0_A Transitional endoplasmi 97.8 0.00048 1.6E-08 72.6 16.3 180 174-378 15-222 (301)
206 3vfd_A Spastin; ATPase, microt 97.7 0.00058 2E-08 75.0 17.3 188 173-384 114-326 (389)
207 1qvr_A CLPB protein; coiled co 97.7 5.4E-05 1.8E-09 92.1 9.8 155 174-350 170-345 (854)
208 2zan_A Vacuolar protein sortin 97.7 0.0007 2.4E-08 75.4 17.8 188 174-384 134-345 (444)
209 4fcw_A Chaperone protein CLPB; 97.7 0.0002 6.7E-09 76.2 12.2 136 175-319 18-169 (311)
210 2bjv_A PSP operon transcriptio 97.6 0.00023 8E-09 73.6 10.9 132 174-319 6-150 (265)
211 1io0_A Tropomodulin; LRR prote 97.6 2.1E-05 7.3E-10 76.3 2.3 113 579-692 28-160 (185)
212 2kjq_A DNAA-related protein; s 97.6 7.3E-05 2.5E-09 69.3 5.7 86 202-319 37-124 (149)
213 4gt6_A Cell surface protein; l 97.5 0.00051 1.8E-08 75.7 12.9 138 543-688 66-210 (394)
214 4b4t_J 26S protease regulatory 97.5 0.0017 6E-08 69.6 16.0 178 174-377 148-354 (405)
215 3pxg_A Negative regulator of g 97.5 0.00059 2E-08 76.6 13.0 147 174-350 180-338 (468)
216 1ofh_A ATP-dependent HSL prote 97.5 0.0011 3.9E-08 70.1 14.6 153 174-348 15-213 (310)
217 3hu3_A Transitional endoplasmi 97.5 0.00085 2.9E-08 75.2 13.9 185 174-383 204-414 (489)
218 1ojl_A Transcriptional regulat 97.5 0.00025 8.7E-09 74.6 8.9 159 174-348 2-188 (304)
219 4b4t_L 26S protease subunit RP 97.4 0.0024 8.1E-08 69.8 15.8 178 174-377 181-387 (437)
220 2c9o_A RUVB-like 1; hexameric 97.4 0.0011 3.9E-08 74.1 13.5 95 283-382 298-408 (456)
221 3pxi_A Negative regulator of g 97.4 0.001 3.6E-08 79.9 13.9 156 174-350 491-675 (758)
222 1lv7_A FTSH; alpha/beta domain 97.4 0.0024 8.3E-08 65.4 14.8 184 174-382 12-223 (257)
223 1r6b_X CLPA protein; AAA+, N-t 97.3 0.0018 6.3E-08 77.8 15.9 157 174-350 186-362 (758)
224 4b4t_K 26S protease regulatory 97.3 0.0029 9.9E-08 69.0 15.3 179 173-376 171-378 (428)
225 2ce7_A Cell division protein F 97.2 0.005 1.7E-07 68.4 16.5 179 174-377 16-221 (476)
226 3rw6_A Nuclear RNA export fact 97.2 0.00033 1.1E-08 71.4 6.4 80 561-644 167-259 (267)
227 4b4t_H 26S protease regulatory 97.2 0.0055 1.9E-07 66.7 16.2 178 174-377 209-415 (467)
228 2cvh_A DNA repair and recombin 97.2 0.0025 8.4E-08 63.6 11.9 84 202-291 21-116 (220)
229 4b4t_M 26S protease regulatory 97.1 0.0025 8.7E-08 69.5 12.2 177 174-376 181-386 (434)
230 4h09_A Hypothetical leucine ri 97.1 0.011 3.9E-07 64.4 17.6 59 772-831 236-294 (379)
231 3pxi_A Negative regulator of g 97.1 0.00093 3.2E-08 80.3 9.4 147 174-350 180-338 (758)
232 4b4t_I 26S protease regulatory 97.1 0.0057 1.9E-07 65.9 14.2 177 174-376 182-387 (437)
233 3m6a_A ATP-dependent protease 97.0 0.0022 7.4E-08 73.3 11.0 162 174-350 81-266 (543)
234 2r44_A Uncharacterized protein 97.0 0.0026 8.9E-08 68.1 10.5 151 175-351 28-199 (331)
235 1r6b_X CLPA protein; AAA+, N-t 97.0 0.0021 7.4E-08 77.3 10.9 133 174-319 458-607 (758)
236 3t15_A Ribulose bisphosphate c 96.9 0.018 6E-07 60.1 16.4 26 199-224 34-59 (293)
237 2qgz_A Helicase loader, putati 96.9 0.00073 2.5E-08 71.1 5.3 57 179-239 133-189 (308)
238 2r62_A Cell division protease 96.8 0.00028 9.5E-09 73.2 1.4 157 174-350 11-196 (268)
239 1qvr_A CLPB protein; coiled co 96.8 0.0029 1E-07 76.9 10.2 136 174-319 558-710 (854)
240 3cf2_A TER ATPase, transitiona 96.7 0.0073 2.5E-07 71.2 12.6 179 174-377 204-407 (806)
241 2vhj_A Ntpase P4, P4; non- hyd 96.7 0.00068 2.3E-08 70.1 3.4 69 201-291 123-193 (331)
242 2b8t_A Thymidine kinase; deoxy 96.6 0.0022 7.4E-08 63.4 5.6 113 201-321 12-127 (223)
243 1n0w_A DNA repair protein RAD5 96.4 0.0074 2.5E-07 61.1 8.8 89 202-291 25-130 (243)
244 1um8_A ATP-dependent CLP prote 96.4 0.017 5.9E-07 62.8 12.3 50 175-224 22-95 (376)
245 4h09_A Hypothetical leucine ri 96.4 0.04 1.4E-06 59.9 15.2 129 771-912 212-342 (379)
246 1ixz_A ATP-dependent metallopr 96.3 0.033 1.1E-06 56.7 13.2 156 174-350 16-199 (254)
247 1jr3_D DNA polymerase III, del 96.3 0.059 2E-06 57.6 15.8 157 201-383 18-184 (343)
248 2x8a_A Nuclear valosin-contain 96.3 0.038 1.3E-06 56.8 13.6 154 175-350 11-191 (274)
249 2dhr_A FTSH; AAA+ protein, hex 96.2 0.031 1.1E-06 62.4 13.1 176 173-377 30-236 (499)
250 1xp8_A RECA protein, recombina 96.2 0.027 9.2E-07 60.3 11.9 83 202-291 75-163 (366)
251 1iy2_A ATP-dependent metallopr 96.1 0.023 8E-07 58.8 10.7 157 173-350 39-223 (278)
252 3io5_A Recombination and repai 96.1 0.016 5.5E-07 59.6 8.8 84 203-291 30-122 (333)
253 1ypw_A Transitional endoplasmi 96.0 0.012 4E-07 70.7 8.8 158 173-350 203-385 (806)
254 3hr8_A Protein RECA; alpha and 96.0 0.011 3.8E-07 62.8 7.6 85 200-291 60-150 (356)
255 1g5t_A COB(I)alamin adenosyltr 96.0 0.0055 1.9E-07 58.5 4.6 117 202-320 29-163 (196)
256 2w0m_A SSO2452; RECA, SSPF, un 95.9 0.016 5.4E-07 58.2 8.1 114 202-320 24-168 (235)
257 1v5w_A DMC1, meiotic recombina 95.8 0.032 1.1E-06 59.6 10.5 57 200-257 121-181 (343)
258 2i1q_A DNA repair and recombin 95.6 0.022 7.5E-07 60.4 8.2 88 201-289 98-213 (322)
259 2z43_A DNA repair and recombin 95.6 0.025 8.6E-07 59.9 8.6 55 202-257 108-166 (324)
260 2zr9_A Protein RECA, recombina 95.5 0.026 9E-07 60.2 8.1 84 201-291 61-150 (349)
261 1pzn_A RAD51, DNA repair and r 95.4 0.049 1.7E-06 58.1 10.1 91 200-291 130-242 (349)
262 1cr0_A DNA primase/helicase; R 95.3 0.045 1.5E-06 57.2 9.3 38 202-240 36-73 (296)
263 1rz3_A Hypothetical protein rb 95.2 0.021 7E-07 55.8 5.7 44 178-224 2-45 (201)
264 2px0_A Flagellar biosynthesis 95.2 0.039 1.3E-06 57.3 8.0 86 201-289 105-191 (296)
265 2orw_A Thymidine kinase; TMTK, 95.1 0.0056 1.9E-07 58.8 1.4 108 202-320 4-113 (184)
266 2ff7_A Alpha-hemolysin translo 95.1 0.094 3.2E-06 52.8 10.3 23 202-224 36-58 (247)
267 1u94_A RECA protein, recombina 94.9 0.036 1.2E-06 59.1 6.8 83 201-290 63-151 (356)
268 2cbz_A Multidrug resistance-as 94.8 0.16 5.4E-06 50.8 11.0 23 202-224 32-54 (237)
269 2dr3_A UPF0273 protein PH0284; 94.7 0.14 4.8E-06 51.6 10.7 38 202-241 24-61 (247)
270 3nbx_X ATPase RAVA; AAA+ ATPas 94.7 0.025 8.7E-07 63.2 5.3 43 175-225 23-65 (500)
271 2pze_A Cystic fibrosis transme 94.6 0.28 9.4E-06 48.7 12.3 23 202-224 35-57 (229)
272 3tqc_A Pantothenate kinase; bi 94.6 0.077 2.6E-06 55.5 8.4 46 176-223 69-114 (321)
273 1mv5_A LMRA, multidrug resista 94.4 0.15 5.1E-06 51.2 9.9 22 202-223 29-50 (243)
274 3bh0_A DNAB-like replicative h 94.4 0.27 9.1E-06 51.6 12.1 50 202-255 69-118 (315)
275 1odf_A YGR205W, hypothetical 3 94.3 0.031 1.1E-06 57.8 4.6 26 199-224 29-54 (290)
276 3c8u_A Fructokinase; YP_612366 94.3 0.031 1.1E-06 54.8 4.4 39 182-224 7-45 (208)
277 1pgv_A TMD-1, tropomodulin TMD 94.3 0.051 1.7E-06 52.1 5.6 110 561-670 38-167 (197)
278 1sky_E F1-ATPase, F1-ATP synth 94.3 0.063 2.1E-06 58.7 7.0 86 203-289 153-254 (473)
279 3dm5_A SRP54, signal recogniti 94.2 0.55 1.9E-05 51.2 14.3 25 200-224 99-123 (443)
280 3lw7_A Adenylate kinase relate 94.2 0.021 7.3E-07 54.2 3.0 19 203-221 3-21 (179)
281 3lda_A DNA repair protein RAD5 94.2 0.11 3.7E-06 56.3 8.7 55 202-257 179-237 (400)
282 4a74_A DNA repair and recombin 94.2 0.13 4.5E-06 51.1 9.0 45 201-245 25-73 (231)
283 3ice_A Transcription terminati 94.2 0.053 1.8E-06 57.3 5.9 54 184-243 162-216 (422)
284 1zp6_A Hypothetical protein AT 94.1 0.029 1E-06 54.1 3.7 24 201-224 9-32 (191)
285 3nh6_A ATP-binding cassette SU 94.0 0.13 4.3E-06 53.5 8.6 22 202-223 81-102 (306)
286 1qhx_A CPT, protein (chloramph 94.0 0.024 8.3E-07 54.0 3.0 23 202-224 4-26 (178)
287 3kl4_A SRP54, signal recogniti 94.0 0.41 1.4E-05 52.2 12.9 90 200-291 96-190 (433)
288 1vma_A Cell division protein F 94.0 0.14 4.7E-06 53.3 8.8 88 200-290 103-196 (306)
289 2pjz_A Hypothetical protein ST 94.0 0.35 1.2E-05 49.0 11.6 22 203-224 32-53 (263)
290 1gvn_B Zeta; postsegregational 93.9 0.05 1.7E-06 56.3 5.3 42 182-224 15-56 (287)
291 1ly1_A Polynucleotide kinase; 93.9 0.029 1E-06 53.5 3.2 22 202-223 3-24 (181)
292 3kb2_A SPBC2 prophage-derived 93.9 0.028 9.4E-07 53.2 3.0 22 203-224 3-24 (173)
293 1kgd_A CASK, peripheral plasma 93.8 0.028 9.5E-07 53.8 2.9 23 202-224 6-28 (180)
294 3tui_C Methionine import ATP-b 93.8 0.27 9.2E-06 52.2 10.7 54 272-325 173-229 (366)
295 2ga8_A Hypothetical 39.9 kDa p 93.6 0.066 2.2E-06 56.3 5.4 46 177-224 2-47 (359)
296 3vaa_A Shikimate kinase, SK; s 93.6 0.03 1E-06 54.5 2.7 23 202-224 26-48 (199)
297 3uie_A Adenylyl-sulfate kinase 93.5 0.041 1.4E-06 53.6 3.6 25 200-224 24-48 (200)
298 4a1f_A DNAB helicase, replicat 93.5 0.15 5E-06 53.8 7.9 51 202-256 47-97 (338)
299 1ex7_A Guanylate kinase; subst 93.4 0.025 8.4E-07 54.0 1.7 23 202-224 2-24 (186)
300 2p5t_B PEZT; postsegregational 93.4 0.061 2.1E-06 54.6 4.8 43 181-224 13-55 (253)
301 3hws_A ATP-dependent CLP prote 93.4 0.053 1.8E-06 58.5 4.6 50 175-224 16-74 (363)
302 2rhm_A Putative kinase; P-loop 93.4 0.049 1.7E-06 52.6 3.8 24 201-224 5-28 (193)
303 1kag_A SKI, shikimate kinase I 93.3 0.031 1.1E-06 52.9 2.4 23 202-224 5-27 (173)
304 3cf2_A TER ATPase, transitiona 93.3 0.29 9.8E-06 57.8 10.8 158 173-350 476-661 (806)
305 3trf_A Shikimate kinase, SK; a 93.3 0.034 1.2E-06 53.3 2.6 23 202-224 6-28 (185)
306 1nks_A Adenylate kinase; therm 93.3 0.043 1.5E-06 53.0 3.3 23 202-224 2-24 (194)
307 1knq_A Gluconate kinase; ALFA/ 93.2 0.052 1.8E-06 51.5 3.7 24 201-224 8-31 (175)
308 3jvv_A Twitching mobility prot 93.2 0.047 1.6E-06 58.2 3.6 111 202-324 124-235 (356)
309 3upu_A ATP-dependent DNA helic 93.1 0.14 4.9E-06 57.1 7.7 38 180-224 31-68 (459)
310 3d31_A Sulfate/molybdate ABC t 93.1 0.5 1.7E-05 50.0 11.3 23 202-224 27-49 (348)
311 3rfe_A Platelet glycoprotein I 93.0 0.11 3.9E-06 46.2 5.4 52 591-647 12-66 (130)
312 3tau_A Guanylate kinase, GMP k 92.9 0.045 1.6E-06 53.7 2.9 24 201-224 8-31 (208)
313 4eun_A Thermoresistant glucoki 92.9 0.044 1.5E-06 53.4 2.7 24 201-224 29-52 (200)
314 1ukz_A Uridylate kinase; trans 92.9 0.057 1.9E-06 52.7 3.6 26 199-224 13-38 (203)
315 1y63_A LMAJ004144AAA protein; 92.9 0.052 1.8E-06 52.0 3.2 24 201-224 10-33 (184)
316 2xxa_A Signal recognition part 92.9 0.37 1.3E-05 52.7 10.4 59 182-241 78-139 (433)
317 2bdt_A BH3686; alpha-beta prot 92.9 0.055 1.9E-06 52.1 3.4 22 202-223 3-24 (189)
318 1uf9_A TT1252 protein; P-loop, 92.9 0.057 2E-06 52.6 3.6 26 199-224 6-31 (203)
319 1zu4_A FTSY; GTPase, signal re 92.9 0.39 1.3E-05 50.3 10.0 40 199-240 103-142 (320)
320 2qt1_A Nicotinamide riboside k 92.9 0.063 2.2E-06 52.6 3.8 25 200-224 20-44 (207)
321 1kht_A Adenylate kinase; phosp 92.9 0.048 1.7E-06 52.5 2.9 23 202-224 4-26 (192)
322 4gp7_A Metallophosphoesterase; 92.8 0.05 1.7E-06 51.4 3.0 23 201-223 9-31 (171)
323 3t61_A Gluconokinase; PSI-biol 92.8 0.04 1.4E-06 53.8 2.3 23 202-224 19-41 (202)
324 2pt7_A CAG-ALFA; ATPase, prote 92.8 0.19 6.6E-06 53.0 7.8 106 202-322 172-277 (330)
325 2ze6_A Isopentenyl transferase 92.8 0.053 1.8E-06 55.0 3.2 23 202-224 2-24 (253)
326 3fwy_A Light-independent proto 92.8 0.058 2E-06 56.5 3.5 41 199-241 46-86 (314)
327 2qor_A Guanylate kinase; phosp 92.7 0.042 1.4E-06 53.7 2.3 25 200-224 11-35 (204)
328 3iij_A Coilin-interacting nucl 92.7 0.042 1.4E-06 52.5 2.2 24 201-224 11-34 (180)
329 3tr0_A Guanylate kinase, GMP k 92.7 0.055 1.9E-06 52.9 3.1 23 202-224 8-30 (205)
330 3asz_A Uridine kinase; cytidin 92.6 0.066 2.3E-06 52.6 3.6 25 200-224 5-29 (211)
331 3a00_A Guanylate kinase, GMP k 92.6 0.043 1.5E-06 52.7 2.2 23 202-224 2-24 (186)
332 3ney_A 55 kDa erythrocyte memb 92.6 0.059 2E-06 51.8 3.1 25 200-224 18-42 (197)
333 1tev_A UMP-CMP kinase; ploop, 92.6 0.06 2E-06 52.1 3.2 24 201-224 3-26 (196)
334 1ye8_A Protein THEP1, hypothet 92.6 0.06 2.1E-06 51.1 3.1 22 203-224 2-23 (178)
335 2ffh_A Protein (FFH); SRP54, s 92.6 0.25 8.5E-06 53.7 8.3 24 201-224 98-121 (425)
336 3umf_A Adenylate kinase; rossm 92.6 0.076 2.6E-06 52.1 3.8 26 199-224 27-52 (217)
337 2jaq_A Deoxyguanosine kinase; 92.5 0.056 1.9E-06 52.7 2.9 22 203-224 2-23 (205)
338 2yvu_A Probable adenylyl-sulfa 92.5 0.075 2.6E-06 51.0 3.8 25 200-224 12-36 (186)
339 2if2_A Dephospho-COA kinase; a 92.5 0.059 2E-06 52.6 3.1 21 203-223 3-23 (204)
340 1zuh_A Shikimate kinase; alpha 92.5 0.059 2E-06 50.7 2.9 25 200-224 6-30 (168)
341 3llm_A ATP-dependent RNA helic 92.5 0.92 3.1E-05 45.1 11.9 89 203-292 78-188 (235)
342 1g8p_A Magnesium-chelatase 38 92.4 0.053 1.8E-06 58.2 2.9 45 174-224 24-68 (350)
343 2j41_A Guanylate kinase; GMP, 92.4 0.058 2E-06 52.7 2.9 23 202-224 7-29 (207)
344 2c95_A Adenylate kinase 1; tra 92.4 0.061 2.1E-06 52.1 3.0 24 201-224 9-32 (196)
345 2cdn_A Adenylate kinase; phosp 92.4 0.067 2.3E-06 52.1 3.3 25 200-224 19-43 (201)
346 1jjv_A Dephospho-COA kinase; P 92.4 0.07 2.4E-06 52.2 3.4 22 202-223 3-24 (206)
347 1fx0_B ATP synthase beta chain 92.4 0.29 1E-05 53.6 8.4 64 186-255 155-219 (498)
348 1xjc_A MOBB protein homolog; s 92.4 0.06 2E-06 50.3 2.7 25 200-224 3-27 (169)
349 3e70_C DPA, signal recognition 92.3 0.3 1E-05 51.3 8.3 25 200-224 128-152 (328)
350 3a4m_A L-seryl-tRNA(SEC) kinas 92.3 0.07 2.4E-06 54.4 3.4 24 201-224 4-27 (260)
351 1via_A Shikimate kinase; struc 92.3 0.061 2.1E-06 51.0 2.7 22 203-224 6-27 (175)
352 3cm0_A Adenylate kinase; ATP-b 92.2 0.076 2.6E-06 50.9 3.4 24 201-224 4-27 (186)
353 1cke_A CK, MSSA, protein (cyti 92.2 0.066 2.2E-06 53.3 3.0 23 202-224 6-28 (227)
354 1lvg_A Guanylate kinase, GMP k 92.1 0.054 1.9E-06 52.6 2.2 23 202-224 5-27 (198)
355 1qf9_A UMP/CMP kinase, protein 92.1 0.078 2.7E-06 51.1 3.3 24 201-224 6-29 (194)
356 2ck3_D ATP synthase subunit be 92.1 0.57 2E-05 51.1 10.2 65 185-255 142-207 (482)
357 2vli_A Antibiotic resistance p 92.0 0.046 1.6E-06 52.3 1.6 24 201-224 5-28 (183)
358 2iyv_A Shikimate kinase, SK; t 92.0 0.055 1.9E-06 51.8 2.1 22 203-224 4-25 (184)
359 2bwj_A Adenylate kinase 5; pho 92.0 0.073 2.5E-06 51.6 3.1 23 202-224 13-35 (199)
360 2zts_A Putative uncharacterize 92.0 0.27 9.1E-06 49.6 7.4 47 202-251 31-77 (251)
361 3tlx_A Adenylate kinase 2; str 92.0 0.12 4E-06 52.1 4.6 25 200-224 28-52 (243)
362 2plr_A DTMP kinase, probable t 92.0 0.081 2.8E-06 52.0 3.4 23 202-224 5-27 (213)
363 2r2a_A Uncharacterized protein 92.0 0.13 4.5E-06 49.6 4.7 20 203-222 7-26 (199)
364 2j37_W Signal recognition part 91.9 0.87 3E-05 50.7 11.8 42 183-224 80-124 (504)
365 1ls1_A Signal recognition part 91.9 0.26 8.9E-06 51.1 7.2 87 201-289 98-189 (295)
366 2grj_A Dephospho-COA kinase; T 91.9 0.095 3.3E-06 50.4 3.6 25 199-223 10-34 (192)
367 2pt5_A Shikimate kinase, SK; a 91.9 0.076 2.6E-06 49.9 2.9 22 203-224 2-23 (168)
368 1j8m_F SRP54, signal recogniti 91.9 0.28 9.6E-06 50.8 7.4 89 201-291 98-191 (297)
369 2yhs_A FTSY, cell division pro 91.9 0.4 1.4E-05 52.8 8.8 25 200-224 292-316 (503)
370 2f6r_A COA synthase, bifunctio 91.9 0.097 3.3E-06 54.0 3.9 24 200-223 74-97 (281)
371 3aez_A Pantothenate kinase; tr 91.8 0.09 3.1E-06 55.0 3.6 25 200-224 89-113 (312)
372 2ged_A SR-beta, signal recogni 91.8 0.12 4.1E-06 49.7 4.4 25 200-224 47-71 (193)
373 1uj2_A Uridine-cytidine kinase 91.8 0.085 2.9E-06 53.5 3.4 25 200-224 21-45 (252)
374 2bbw_A Adenylate kinase 4, AK4 91.8 0.082 2.8E-06 53.4 3.1 23 201-223 27-49 (246)
375 1e6c_A Shikimate kinase; phosp 91.7 0.067 2.3E-06 50.5 2.3 22 203-224 4-25 (173)
376 2ewv_A Twitching motility prot 91.7 0.25 8.5E-06 53.2 7.0 108 201-322 136-246 (372)
377 4akg_A Glutathione S-transfera 91.7 1.2 4.2E-05 59.6 14.7 215 204-485 1270-1518(2695)
378 2pez_A Bifunctional 3'-phospho 91.7 0.097 3.3E-06 49.8 3.4 24 201-224 5-28 (179)
379 2pbr_A DTMP kinase, thymidylat 91.6 0.084 2.9E-06 50.9 2.9 22 203-224 2-23 (195)
380 2hf9_A Probable hydrogenase ni 91.6 0.11 3.9E-06 51.4 3.9 25 200-224 37-61 (226)
381 1tue_A Replication protein E1; 91.5 0.11 3.7E-06 49.8 3.5 37 183-224 45-81 (212)
382 1htw_A HI0065; nucleotide-bind 91.5 0.12 4E-06 47.9 3.6 24 201-224 33-56 (158)
383 1znw_A Guanylate kinase, GMP k 91.5 0.094 3.2E-06 51.3 3.1 23 202-224 21-43 (207)
384 3rfe_A Platelet glycoprotein I 91.4 0.18 6.3E-06 44.8 4.7 54 568-626 12-68 (130)
385 1aky_A Adenylate kinase; ATP:A 91.4 0.086 2.9E-06 52.2 2.8 23 202-224 5-27 (220)
386 2jeo_A Uridine-cytidine kinase 91.4 0.11 3.8E-06 52.4 3.6 23 201-223 25-47 (245)
387 3b5x_A Lipid A export ATP-bind 91.3 0.95 3.3E-05 52.0 11.9 23 202-224 370-392 (582)
388 1nn5_A Similar to deoxythymidy 91.3 0.095 3.3E-06 51.6 3.0 24 201-224 9-32 (215)
389 4e22_A Cytidylate kinase; P-lo 91.2 0.1 3.4E-06 52.9 3.1 22 202-223 28-49 (252)
390 1rj9_A FTSY, signal recognitio 91.2 0.1 3.4E-06 54.3 3.1 24 201-224 102-125 (304)
391 3vkw_A Replicase large subunit 91.2 0.62 2.1E-05 50.5 9.3 108 198-321 158-271 (446)
392 3bgw_A DNAB-like replicative h 91.2 0.9 3.1E-05 50.0 11.0 50 202-255 198-247 (444)
393 2wwf_A Thymidilate kinase, put 91.2 0.1 3.5E-06 51.2 3.1 24 201-224 10-33 (212)
394 1zd8_A GTP:AMP phosphotransfer 91.1 0.1 3.5E-06 51.9 3.1 23 202-224 8-30 (227)
395 1s96_A Guanylate kinase, GMP k 91.1 0.1 3.4E-06 51.5 2.9 24 201-224 16-39 (219)
396 3tif_A Uncharacterized ABC tra 91.1 0.16 5.4E-06 50.7 4.4 23 202-224 32-54 (235)
397 3l0o_A Transcription terminati 91.1 0.76 2.6E-05 48.5 9.5 55 182-242 161-216 (427)
398 3cmu_A Protein RECA, recombina 91.1 0.23 7.8E-06 64.1 6.8 84 200-290 1426-1515(2050)
399 1z6g_A Guanylate kinase; struc 91.1 0.09 3.1E-06 51.9 2.5 23 202-224 24-46 (218)
400 2z0h_A DTMP kinase, thymidylat 91.1 0.1 3.5E-06 50.4 3.0 22 203-224 2-23 (197)
401 1m7g_A Adenylylsulfate kinase; 91.1 0.12 4.2E-06 50.7 3.5 24 201-224 25-48 (211)
402 1gtv_A TMK, thymidylate kinase 91.0 0.072 2.4E-06 52.4 1.8 22 203-224 2-23 (214)
403 2f1r_A Molybdopterin-guanine d 91.0 0.08 2.7E-06 49.8 1.9 23 202-224 3-25 (171)
404 2pcj_A ABC transporter, lipopr 91.0 0.17 5.9E-06 50.0 4.5 23 202-224 31-53 (224)
405 1sq5_A Pantothenate kinase; P- 90.9 0.24 8.3E-06 51.8 5.9 25 200-224 79-103 (308)
406 3fb4_A Adenylate kinase; psych 90.9 0.11 3.7E-06 51.3 3.0 22 203-224 2-23 (216)
407 2r9v_A ATP synthase subunit al 90.9 0.33 1.1E-05 53.2 6.9 96 185-289 164-276 (515)
408 2onk_A Molybdate/tungstate ABC 90.9 0.17 5.8E-06 50.6 4.3 23 202-224 25-47 (240)
409 2wsm_A Hydrogenase expression/ 90.8 0.18 6E-06 49.9 4.5 40 179-224 14-53 (221)
410 2q6t_A DNAB replication FORK h 90.8 0.56 1.9E-05 51.9 9.0 51 202-255 201-251 (444)
411 2j9r_A Thymidine kinase; TK1, 90.8 0.31 1.1E-05 47.1 5.9 110 201-321 28-139 (214)
412 3dl0_A Adenylate kinase; phosp 90.7 0.12 4E-06 51.0 3.0 22 203-224 2-23 (216)
413 2v54_A DTMP kinase, thymidylat 90.7 0.12 4E-06 50.4 3.0 23 202-224 5-27 (204)
414 3gfo_A Cobalt import ATP-bindi 90.7 0.18 6.1E-06 51.5 4.4 22 202-223 35-56 (275)
415 1vht_A Dephospho-COA kinase; s 90.6 0.14 4.8E-06 50.5 3.5 23 201-223 4-26 (218)
416 2i3b_A HCR-ntpase, human cance 90.6 0.11 3.8E-06 49.8 2.5 22 203-224 3-24 (189)
417 1b0u_A Histidine permease; ABC 90.6 0.19 6.4E-06 51.1 4.4 23 202-224 33-55 (262)
418 1pgv_A TMD-1, tropomodulin TMD 90.5 0.07 2.4E-06 51.1 1.1 101 728-833 26-136 (197)
419 1g41_A Heat shock protein HSLU 90.5 0.21 7.2E-06 54.5 5.0 51 174-224 15-73 (444)
420 1zak_A Adenylate kinase; ATP:A 90.5 0.1 3.5E-06 51.7 2.4 23 202-224 6-28 (222)
421 3k1j_A LON protease, ATP-depen 90.5 0.15 5.1E-06 59.1 4.0 43 174-224 41-83 (604)
422 2qe7_A ATP synthase subunit al 90.4 0.34 1.2E-05 53.1 6.5 95 186-289 152-263 (502)
423 3gqb_B V-type ATP synthase bet 90.4 0.18 6.1E-06 54.6 4.2 99 186-289 137-260 (464)
424 1tf7_A KAIC; homohexamer, hexa 90.4 0.21 7E-06 56.8 5.0 114 202-320 282-417 (525)
425 3vr4_D V-type sodium ATPase su 90.4 0.23 8E-06 53.7 5.1 85 203-289 153-257 (465)
426 3b9q_A Chloroplast SRP recepto 90.3 0.16 5.3E-06 52.9 3.6 25 200-224 99-123 (302)
427 3d3q_A TRNA delta(2)-isopenten 90.3 0.14 4.8E-06 53.7 3.2 23 202-224 8-30 (340)
428 1ny5_A Transcriptional regulat 90.2 2.2 7.4E-05 46.1 12.8 133 175-319 138-281 (387)
429 3a8t_A Adenylate isopentenyltr 90.2 0.17 5.9E-06 52.7 3.8 24 201-224 40-63 (339)
430 1q57_A DNA primase/helicase; d 90.2 1.2 4.2E-05 50.1 11.3 53 201-256 242-294 (503)
431 3nwj_A ATSK2; P loop, shikimat 90.1 0.12 4E-06 52.1 2.3 23 202-224 49-71 (250)
432 2ehv_A Hypothetical protein PH 90.1 0.14 4.9E-06 51.7 3.1 22 202-223 31-52 (251)
433 2olj_A Amino acid ABC transpor 90.1 0.22 7.5E-06 50.5 4.4 23 202-224 51-73 (263)
434 1sgw_A Putative ABC transporte 90.1 0.19 6.6E-06 49.1 3.8 23 202-224 36-58 (214)
435 1np6_A Molybdopterin-guanine d 90.0 0.14 4.7E-06 48.3 2.6 24 201-224 6-29 (174)
436 2og2_A Putative signal recogni 90.0 0.32 1.1E-05 51.6 5.8 25 200-224 156-180 (359)
437 1ji0_A ABC transporter; ATP bi 90.0 0.23 7.8E-06 49.8 4.4 23 202-224 33-55 (240)
438 3ake_A Cytidylate kinase; CMP 90.0 0.15 5E-06 49.8 3.0 22 203-224 4-25 (208)
439 4g1u_C Hemin import ATP-bindin 90.0 0.22 7.5E-06 50.7 4.3 23 202-224 38-60 (266)
440 3sr0_A Adenylate kinase; phosp 89.9 0.15 5.2E-06 49.6 3.0 22 203-224 2-23 (206)
441 1vpl_A ABC transporter, ATP-bi 89.9 0.23 7.9E-06 50.2 4.4 23 202-224 42-64 (256)
442 3p32_A Probable GTPase RV1496/ 89.9 0.3 1E-05 52.3 5.6 38 183-224 65-102 (355)
443 1g6h_A High-affinity branched- 89.9 0.23 7.9E-06 50.3 4.4 23 202-224 34-56 (257)
444 3hjn_A DTMP kinase, thymidylat 89.9 0.4 1.4E-05 46.2 5.9 22 203-224 2-23 (197)
445 3lnc_A Guanylate kinase, GMP k 89.9 0.11 3.8E-06 51.8 2.0 23 202-224 28-51 (231)
446 1e4v_A Adenylate kinase; trans 89.9 0.16 5.4E-06 50.0 3.1 22 203-224 2-23 (214)
447 3be4_A Adenylate kinase; malar 89.9 0.16 5.4E-06 50.1 3.1 23 202-224 6-28 (217)
448 3r20_A Cytidylate kinase; stru 89.8 0.16 5.6E-06 50.2 3.1 23 202-224 10-32 (233)
449 2ixe_A Antigen peptide transpo 89.8 0.24 8.1E-06 50.6 4.4 23 202-224 46-68 (271)
450 2xb4_A Adenylate kinase; ATP-b 89.7 0.16 5.3E-06 50.4 2.9 22 203-224 2-23 (223)
451 3e1s_A Exodeoxyribonuclease V, 89.7 0.48 1.6E-05 54.2 7.3 23 202-224 205-227 (574)
452 1yrb_A ATP(GTP)binding protein 89.7 0.21 7.3E-06 50.8 4.0 26 199-224 12-37 (262)
453 3crm_A TRNA delta(2)-isopenten 89.7 0.17 5.7E-06 52.7 3.2 23 202-224 6-28 (323)
454 1fx0_A ATP synthase alpha chai 89.6 0.31 1.1E-05 53.5 5.4 84 202-289 164-264 (507)
455 2r6a_A DNAB helicase, replicat 89.6 0.6 2.1E-05 51.8 7.9 49 202-253 204-252 (454)
456 3exa_A TRNA delta(2)-isopenten 89.6 0.19 6.5E-06 51.7 3.4 24 201-224 3-26 (322)
457 2wji_A Ferrous iron transport 89.6 0.22 7.4E-06 46.5 3.7 23 202-224 4-26 (165)
458 3end_A Light-independent proto 89.5 0.28 9.5E-06 51.3 4.9 44 199-244 39-82 (307)
459 3b60_A Lipid A export ATP-bind 89.5 1.1 3.8E-05 51.5 10.2 23 202-224 370-392 (582)
460 2c61_A A-type ATP synthase non 89.4 0.27 9.3E-06 53.6 4.7 99 186-289 142-258 (469)
461 2vp4_A Deoxynucleoside kinase; 89.4 0.19 6.4E-06 50.1 3.3 26 199-224 18-43 (230)
462 2yz2_A Putative ABC transporte 89.4 0.26 9.1E-06 50.1 4.4 23 202-224 34-56 (266)
463 1ak2_A Adenylate kinase isoenz 89.3 0.17 5.9E-06 50.5 2.9 23 202-224 17-39 (233)
464 1oix_A RAS-related protein RAB 89.3 0.24 8.1E-06 47.6 3.8 24 201-224 29-52 (191)
465 3j16_B RLI1P; ribosome recycli 89.2 1.7 5.6E-05 49.9 11.3 125 202-326 379-534 (608)
466 3b85_A Phosphate starvation-in 89.2 0.14 4.9E-06 49.9 2.1 22 203-224 24-45 (208)
467 3foz_A TRNA delta(2)-isopenten 89.2 0.23 7.7E-06 51.1 3.6 25 200-224 9-33 (316)
468 2zej_A Dardarin, leucine-rich 89.1 0.17 6E-06 48.2 2.7 22 203-224 4-25 (184)
469 4edh_A DTMP kinase, thymidylat 89.1 0.78 2.7E-05 44.8 7.4 24 201-224 6-29 (213)
470 2ihy_A ABC transporter, ATP-bi 89.0 0.29 9.9E-06 50.2 4.4 23 202-224 48-70 (279)
471 3cmu_A Protein RECA, recombina 89.0 0.5 1.7E-05 61.0 7.4 84 201-291 383-472 (2050)
472 2wjg_A FEOB, ferrous iron tran 88.9 0.3 1E-05 46.6 4.2 25 200-224 6-30 (188)
473 1ltq_A Polynucleotide kinase; 88.9 0.2 6.8E-06 52.3 3.2 22 202-223 3-24 (301)
474 1xx6_A Thymidine kinase; NESG, 88.9 0.12 3.9E-06 49.6 1.2 108 201-320 8-118 (191)
475 2dyk_A GTP-binding protein; GT 88.9 0.23 7.9E-06 45.8 3.3 23 202-224 2-24 (161)
476 3zvl_A Bifunctional polynucleo 88.9 0.19 6.4E-06 55.1 3.0 26 199-224 256-281 (416)
477 2d2e_A SUFC protein; ABC-ATPas 88.7 0.22 7.4E-06 50.3 3.1 23 202-224 30-52 (250)
478 3dzd_A Transcriptional regulat 88.6 0.34 1.2E-05 52.0 4.8 160 174-348 129-314 (368)
479 2qmh_A HPR kinase/phosphorylas 88.6 0.24 8.3E-06 47.1 3.1 23 202-224 35-57 (205)
480 2f9l_A RAB11B, member RAS onco 88.5 0.21 7.1E-06 48.4 2.8 24 201-224 5-28 (199)
481 2ck3_A ATP synthase subunit al 88.5 0.47 1.6E-05 52.1 5.8 100 185-289 151-271 (510)
482 4a82_A Cystic fibrosis transme 88.5 0.83 2.8E-05 52.5 8.2 23 202-224 368-390 (578)
483 3qf4_A ABC transporter, ATP-bi 88.4 1.9 6.3E-05 49.6 11.1 22 202-223 370-391 (587)
484 2zu0_C Probable ATP-dependent 88.4 0.23 7.9E-06 50.6 3.1 23 202-224 47-69 (267)
485 2eyu_A Twitching motility prot 88.4 0.26 8.9E-06 50.0 3.5 24 201-224 25-48 (261)
486 1a7j_A Phosphoribulokinase; tr 88.3 0.11 3.8E-06 53.7 0.8 24 201-224 5-28 (290)
487 3thx_A DNA mismatch repair pro 88.3 1 3.5E-05 54.2 9.1 21 201-221 662-682 (934)
488 3cmw_A Protein RECA, recombina 88.3 0.4 1.4E-05 61.0 5.8 81 202-289 384-470 (1706)
489 2ce2_X GTPase HRAS; signaling 88.1 0.24 8.3E-06 45.8 3.0 22 203-224 5-26 (166)
490 2v9p_A Replication protein E1; 88.1 0.24 8.4E-06 51.2 3.1 23 202-224 127-149 (305)
491 2qi9_C Vitamin B12 import ATP- 88.1 0.23 8E-06 49.9 2.9 23 202-224 27-49 (249)
492 2ghi_A Transport protein; mult 88.1 0.23 7.9E-06 50.3 2.9 23 202-224 47-69 (260)
493 4eaq_A DTMP kinase, thymidylat 88.1 0.31 1.1E-05 48.4 3.8 25 200-224 25-49 (229)
494 2ocp_A DGK, deoxyguanosine kin 88.0 0.28 9.6E-06 49.2 3.5 24 201-224 2-25 (241)
495 2nq2_C Hypothetical ABC transp 87.9 0.24 8.4E-06 49.9 2.9 23 202-224 32-54 (253)
496 3qf4_B Uncharacterized ABC tra 87.9 0.7 2.4E-05 53.3 7.1 23 202-224 382-404 (598)
497 2r8r_A Sensor protein; KDPD, P 87.9 0.56 1.9E-05 45.8 5.3 105 202-320 7-127 (228)
498 1q3t_A Cytidylate kinase; nucl 87.8 0.25 8.4E-06 49.4 2.9 26 199-224 14-39 (236)
499 1fzq_A ADP-ribosylation factor 87.8 0.33 1.1E-05 46.1 3.7 25 200-224 15-39 (181)
500 2xau_A PRE-mRNA-splicing facto 87.8 2.9 9.9E-05 49.6 12.5 21 202-222 110-130 (773)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.6e-45 Score=426.29 Aligned_cols=318 Identities=20% Similarity=0.267 Sum_probs=254.7
Q ss_pred ccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHc--CcccccccceEEEEEeCCCC--CHHHHHH
Q 043039 175 EVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYN--DADVSNNFNVMIWVCVSDPF--DVFRVWK 250 (949)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~ 250 (949)
..|||++++++|.++|.... ....++|+|+||||+||||||+++|+ +.+++.+|+.++||++++.+ ++..++.
T Consensus 129 ~~~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~ 205 (549)
T 2a5y_B 129 TCYIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFT 205 (549)
T ss_dssp CSCCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHH
T ss_pred ccCCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHH
Confidence 33599999999999997542 24579999999999999999999998 56788999999999999885 8999999
Q ss_pred HHHHhcCCCCC-------CCcchHHHHHHHHhhhCCc-eEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccchhh
Q 043039 251 AIIENLDGYTP-------DLGELNTLHQLINNRIGGK-KVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKETV 322 (949)
Q Consensus 251 ~i~~~l~~~~~-------~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 322 (949)
.|+.+++.... +..+.+.+...+++.|+++ ||||||||||+.+...|. . .+||+||||||++.+
T Consensus 206 ~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~-------~-~~gs~ilvTTR~~~v 277 (549)
T 2a5y_B 206 DILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWA-------Q-ELRLRCLVTTRDVEI 277 (549)
T ss_dssp HHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHH-------H-HTTCEEEEEESBGGG
T ss_pred HHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhccc-------c-cCCCEEEEEcCCHHH
Confidence 99999976421 2234566788999999996 999999999985321222 1 279999999999999
Q ss_pred Hhhhc-CcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHHhhhccCCCHHHHHHHHh
Q 043039 323 ARMIG-STCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIGSLLRFKKAREEWQSILD 401 (949)
Q Consensus 323 ~~~~~-~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~l~ 401 (949)
+..++ ...+|++++|+.++||+||.++++... .++.+.+++.+|+++|+|+||||+++|+.++.+ . -+|...+.
T Consensus 278 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~ 352 (549)
T 2a5y_B 278 SNAASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLN 352 (549)
T ss_dssp GGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHH
T ss_pred HHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhH
Confidence 98775 446899999999999999999987542 246788899999999999999999999999754 3 23333343
Q ss_pred hhccchhhhccchHHHHHhccCCCChhHHHHHh-----------hhcccCCCcccChhhHHHHHHHc--CccccCC-Chh
Q 043039 402 SEIWQVEEFEKNLLPALLLSYNDLPNEIKRCFS-----------YCAVLPKECYVDRDELIKLWMAQ--GYIDQKG-NKE 467 (949)
Q Consensus 402 ~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~-----------~~a~fp~~~~i~~~~li~~w~ae--g~i~~~~-~~~ 467 (949)
...+.. ....+.+++.+||+.||+++|.||+ |||+||+++.|+ ++.|+|+ ||+...+ ...
T Consensus 353 ~~l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~ 426 (549)
T 2a5y_B 353 NKLESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQL 426 (549)
T ss_dssp HHHHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCC
T ss_pred HHhhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCC
Confidence 322221 2456889999999999999999999 999999999998 8899999 9998765 444
Q ss_pred hhhHHHHHHHHHHHHHHhccCcccccccCCCCEeEEEEchhHHHHHHHhhhhhhe
Q 043039 468 MEMEMEMVGERYFDLLAKRSFFQEFEKHEEGNVKRYKMHDIVHGFAQLLTKVECA 522 (949)
Q Consensus 468 ~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~hdlv~~~~~~~~~~~~~ 522 (949)
. +++++ ++++|+++||++....+ ...+|+|||++|+++..++..++.
T Consensus 427 ~----~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 427 D----DEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp T----HHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred H----HHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 4 77787 99999999999986543 335799999999999988877654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=7e-37 Score=355.81 Aligned_cols=285 Identities=19% Similarity=0.217 Sum_probs=225.6
Q ss_pred ccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccce-EEEEEeCCCCCHHHHHHHHH
Q 043039 175 EVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNV-MIWVCVSDPFDVFRVWKAII 253 (949)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~ 253 (949)
..+||++++++|.++|.... +.++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..|+
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 35999999999999997532 3689999999999999999999987778889986 99999999999988888887
Q ss_pred HhcCCC------CCC-----CcchHHHHHHHHhhh---CCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccc
Q 043039 254 ENLDGY------TPD-----LGELNTLHQLINNRI---GGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRK 319 (949)
Q Consensus 254 ~~l~~~------~~~-----~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 319 (949)
+.+... ..+ ..+.+.+...+++.| .++|+||||||||+. ..|+.+ + +||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSC
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccC
Confidence 754311 011 013345566666655 789999999999983 445432 2 69999999999
Q ss_pred hhhHhhhcCcceEeCC------CCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHHhhhccCC-C
Q 043039 320 ETVARMIGSTCVISIE------ELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIGSLLRFKK-A 392 (949)
Q Consensus 320 ~~v~~~~~~~~~~~l~------~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~-~ 392 (949)
+.++..+.....+.++ +|+.+|||+||.++. +.. . .++..+| |+|+||||+++|+.|+.+. .
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s 343 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----P---QDLPREV---LTTNPRRLSIIAESIRDGLAT 343 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSS
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC----H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCC
Confidence 9988655444456666 999999999999984 221 1 1223333 9999999999999998764 6
Q ss_pred HHHHHHHHhhhccchhhhccchHHHHHhccCCCChhH-HHHHhhhcccCCCcccChhhHHHHHHHcCccccCCChhhhhH
Q 043039 393 REEWQSILDSEIWQVEEFEKNLLPALLLSYNDLPNEI-KRCFSYCAVLPKECYVDRDELIKLWMAQGYIDQKGNKEMEME 471 (949)
Q Consensus 393 ~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~cf~~~a~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~ 471 (949)
.+.|... ....+..+|.+||+.||++. |.||+|||+||+++.|+.+.++.+|+++|
T Consensus 344 ~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG------------- 400 (1221)
T 1vt4_I 344 WDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------------- 400 (1221)
T ss_dssp HHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-------------
T ss_pred HHHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-------------
Confidence 7889764 13568999999999999999 99999999999999999999999999886
Q ss_pred HHHHHHHHHHHHHhccCcccccccCCCCEeEEEEchhHHHHH
Q 043039 472 MEMVGERYFDLLAKRSFFQEFEKHEEGNVKRYKMHDIVHGFA 513 (949)
Q Consensus 472 ~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~hdlv~~~~ 513 (949)
++.+..++++|+++||++... ...+|+|||++++++
T Consensus 401 -eedAe~~L~eLvdRSLLq~d~-----~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 401 -KSDVMVVVNKLHKYSLVEKQP-----KESTISIPSIYLELK 436 (1221)
T ss_dssp -SHHHHHHHHHHHTSSSSSBCS-----SSSEEBCCCHHHHHH
T ss_pred -HHHHHHHHHHHHhhCCEEEeC-----CCCEEEehHHHHHHh
Confidence 123678999999999999731 224699999998855
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.7e-35 Score=383.47 Aligned_cols=313 Identities=23% Similarity=0.302 Sum_probs=246.7
Q ss_pred ccccCccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCccc-cccc-ceEEEEEeCCCCC--H
Q 043039 170 LINVSEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADV-SNNF-NVMIWVCVSDPFD--V 245 (949)
Q Consensus 170 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~--~ 245 (949)
+.+++.|+||++++++|.++|.... .+.++|+|+||||+||||||+++|++.+. ..+| +.++||+++...+ .
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 195 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGL 195 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHH
Confidence 3445679999999999999997543 36799999999999999999999998543 4445 7888999988543 4
Q ss_pred HHHHHHHHHhcCCCC----CCCcchHHHHHHHHhhhCCc--eEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccc
Q 043039 246 FRVWKAIIENLDGYT----PDLGELNTLHQLINNRIGGK--KVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRK 319 (949)
Q Consensus 246 ~~~~~~i~~~l~~~~----~~~~~~~~~~~~l~~~l~~~--~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 319 (949)
...+..++..+.... ....+.+.+...++..+.++ ||||||||||+. .. +....+||+||||||+
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~-------~~~~~~~~~ilvTtR~ 266 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WV-------LKAFDNQCQILLTTRD 266 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HH-------HTTTCSSCEEEEEESS
T ss_pred HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HH-------HHhhcCCCEEEEEcCC
Confidence 555677777776532 22346778888899999877 999999999864 22 2334679999999999
Q ss_pred hhhHhh-hcCcceEeCCC-CChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHHhhhccCCCHHHHH
Q 043039 320 ETVARM-IGSTCVISIEE-LSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIGSLLRFKKAREEWQ 397 (949)
Q Consensus 320 ~~v~~~-~~~~~~~~l~~-l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~ 397 (949)
+.++.. +.....+++.+ |++++|++||...++.. .+...+++++|+++|+|+||||+++|++|+.+. ..|.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~ 339 (1249)
T 3sfz_A 267 KSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWA 339 (1249)
T ss_dssp TTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHH
T ss_pred HHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHH
Confidence 999854 45567899996 99999999999988532 233456789999999999999999999998654 2466
Q ss_pred HHHhhhccch----h----hhccchHHHHHhccCCCChhHHHHHhhhcccCCCcccChhhHHHHHHHcCccccCCChhhh
Q 043039 398 SILDSEIWQV----E----EFEKNLLPALLLSYNDLPNEIKRCFSYCAVLPKECYVDRDELIKLWMAQGYIDQKGNKEME 469 (949)
Q Consensus 398 ~~l~~~~~~~----~----~~~~~i~~~l~~sy~~L~~~~k~cf~~~a~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~ 469 (949)
..+....... . .....+.+++.+||+.||+++|.||+|||+||+++.|+++.++.+|.++
T Consensus 340 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------ 407 (1249)
T 3sfz_A 340 YYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------ 407 (1249)
T ss_dssp HHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------
T ss_pred HHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------
Confidence 5554321111 1 1124689999999999999999999999999999999999999999765
Q ss_pred hHHHHHHHHHHHHHHhccCcccccccCCCCEeEEEEchhHHHHHHHhhhhh
Q 043039 470 MEMEMVGERYFDLLAKRSFFQEFEKHEEGNVKRYKMHDIVHGFAQLLTKVE 520 (949)
Q Consensus 470 ~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~hdlv~~~~~~~~~~~ 520 (949)
++.++.++++|+++||++... .+...+|+||+++++++.....++
T Consensus 408 ---~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 ---TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp ---HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ---HHHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 566789999999999998654 334467999999999998886654
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=325.04 Aligned_cols=306 Identities=24% Similarity=0.294 Sum_probs=231.1
Q ss_pred ccCccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCccc-cccc-ceEEEEEeCCCCCHHHHH
Q 043039 172 NVSEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADV-SNNF-NVMIWVCVSDPFDVFRVW 249 (949)
Q Consensus 172 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~ 249 (949)
.++.||||++++++|.++|.... ++.++|+|+||||+||||||.+++++.+. ..+| +.++|++++.. +...++
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~ 196 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLL 196 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHH
Confidence 34569999999999999997532 35789999999999999999999998655 6789 58999999865 333333
Q ss_pred HH---HHHhcCCC----CCCCcchHHHHHHHHhhhCC--ceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccch
Q 043039 250 KA---IIENLDGY----TPDLGELNTLHQLINNRIGG--KKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKE 320 (949)
Q Consensus 250 ~~---i~~~l~~~----~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 320 (949)
.. ++..++.. .....+.+.+...+...+.+ +++||||||+|+. . .+ ....+|++||||||++
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~---~l----~~l~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--W---VL----KAFDSQCQILLTTRDK 267 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--H---HH----HTTCSSCEEEEEESCG
T ss_pred HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--H---HH----HHhcCCCeEEEECCCc
Confidence 33 34444421 12234566677777777765 7999999999863 1 22 2236789999999999
Q ss_pred hhHhhhcCcceEeC---CCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHHhhhccCCCHHHHH
Q 043039 321 TVARMIGSTCVISI---EELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIGSLLRFKKAREEWQ 397 (949)
Q Consensus 321 ~v~~~~~~~~~~~l---~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~ 397 (949)
.++..+.. ..+++ ++|+.++++++|...++.. .....+.+.+|+++|+|+||||..+|+.++... ..|.
T Consensus 268 ~~~~~~~~-~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~ 339 (591)
T 1z6t_A 268 SVTDSVMG-PKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWE 339 (591)
T ss_dssp GGGTTCCS-CEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHH
T ss_pred HHHHhcCC-CceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHH
Confidence 88765432 33443 6899999999999998641 122345688999999999999999999998653 3577
Q ss_pred HHHhhhccch--------hhhccchHHHHHhccCCCChhHHHHHhhhcccCCCcccChhhHHHHHHHcCccccCCChhhh
Q 043039 398 SILDSEIWQV--------EEFEKNLLPALLLSYNDLPNEIKRCFSYCAVLPKECYVDRDELIKLWMAQGYIDQKGNKEME 469 (949)
Q Consensus 398 ~~l~~~~~~~--------~~~~~~i~~~l~~sy~~L~~~~k~cf~~~a~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~ 469 (949)
.++....... .....++..++..||+.||++.|.||++||+||+++.|+.+.+...|.++
T Consensus 340 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------ 407 (591)
T 1z6t_A 340 YYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------ 407 (591)
T ss_dssp HHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------
T ss_pred HHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------
Confidence 6655422111 11124688999999999999999999999999999999999999999654
Q ss_pred hHHHHHHHHHHHHHHhccCcccccccCCCCEeEEEEchhHHHHHHHhh
Q 043039 470 MEMEMVGERYFDLLAKRSFFQEFEKHEEGNVKRYKMHDIVHGFAQLLT 517 (949)
Q Consensus 470 ~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~hdlv~~~~~~~~ 517 (949)
.+.+..++++|+++||++... .+....|+||+++++++....
T Consensus 408 ---~~~~~~~l~~L~~~~Ll~~~~---~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 408 ---TEEVEDILQEFVNKSLLFCDR---NGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp ---HHHHHHHHHHHHHTTSSEEEE---ETTEEEEECCHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHhCcCeEEec---CCCccEEEEcHHHHHHHHhhh
Confidence 345678899999999998543 234467999999999998773
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=1.9e-27 Score=289.18 Aligned_cols=374 Identities=20% Similarity=0.228 Sum_probs=179.1
Q ss_pred CCceEEEEEeccCC-CCcccccC-CCCceEEEecCCCCC-CcchhhccCCceeEEEeCCccccccc-ccccc-ccCCCCC
Q 043039 541 EKLRHSILVLHYNA-SFPVSIFN-AKKLRSLLIQGYSLQ-HMPSFFDQLTCLRALRIGKYGDDAIE-RIPNG-IEKLIHL 615 (949)
Q Consensus 541 ~~~r~l~l~~~~~~-~l~~~~~~-~~~Lr~L~l~~~~l~-~l~~~~~~l~~Lr~L~L~~~~~~~~~-~lp~~-i~~l~~L 615 (949)
..++.+.+..+... .+|..+.. +++|++|++++|.+. .+|..|..+++|++|++++|. +. .+|.. ++++++|
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~---l~~~ip~~~l~~l~~L 345 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN---FSGELPMDTLLKMRGL 345 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE---EEEECCHHHHTTCTTC
T ss_pred CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc---ccCcCCHHHHhcCCCC
Confidence 45566666555443 34444444 366666666666655 345556666666666666665 33 45543 5666666
Q ss_pred CeeeecccCCc-ccchhhcCCC-CCcEEeecCCCCCCcccccccc--CCCCCeeeCCCcccc-cCCcCCCCCCCCcccCc
Q 043039 616 RYLKLFFVGIE-ELPETFCELF-NLQNLDLRRCSKFKRLPQNIGK--LVNLRHLIFDEDDLD-YMPKGMGSLTGLRTLSE 690 (949)
Q Consensus 616 ~~L~L~~~~i~-~lp~~l~~L~-~L~~L~L~~~~~l~~lp~~i~~--L~~L~~L~l~~~~l~-~~p~~i~~l~~L~~L~~ 690 (949)
++|++++|.+. .+|..+..++ +|++|++++|.....+|..+.. +++|++|++++|.++ .+|..++++++|+.|++
T Consensus 346 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 425 (768)
T 3rgz_A 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425 (768)
T ss_dssp CEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEEC
T ss_pred CEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEEC
Confidence 66666666655 5565555555 5666666655543444444444 455555555555554 34455555555555554
Q ss_pred cceecCCCccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhh
Q 043039 691 FVAVSGGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIE 770 (949)
Q Consensus 691 ~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 770 (949)
..+... ......+..+..|. .+.+.+..-... ....+..+++|+.|++++|.+.+. .+.
T Consensus 426 s~N~l~----~~~p~~l~~l~~L~----~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~---------~p~ 484 (768)
T 3rgz_A 426 SFNYLS----GTIPSSLGSLSKLR----DLKLWLNMLEGE----IPQELMYVKTLETLILDFNDLTGE---------IPS 484 (768)
T ss_dssp CSSEEE----SCCCGGGGGCTTCC----EEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCCSC---------CCG
T ss_pred cCCccc----CcccHHHhcCCCCC----EEECCCCcccCc----CCHHHcCCCCceEEEecCCcccCc---------CCH
Confidence 332111 01111122222221 222222111000 011233444555555555444432 233
Q ss_pred cCCCCCCcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCCCCCC-CCCCCCcceeeecCCCCcEEeCC--------
Q 043039 771 ALRPHPNLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMPP-LGKLQSLEVLDIWEMHGIKRVGD-------- 841 (949)
Q Consensus 771 ~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~~-------- 841 (949)
.+..+++|+.|+|++|.+.+.+|.++..+++|+.|+|++|.+.+.+|. ++.+++|+.|++++|.-...++.
T Consensus 485 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~ 564 (768)
T 3rgz_A 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTC
T ss_pred HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccch
Confidence 344444555555555554444455555555555555555544433332 44444555554444431101110
Q ss_pred ------------------------------------------------------------------------------cc
Q 043039 842 ------------------------------------------------------------------------------EV 843 (949)
Q Consensus 842 ------------------------------------------------------------------------------~~ 843 (949)
.+
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l 644 (768)
T 3rgz_A 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644 (768)
T ss_dssp BCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCC
T ss_pred hhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcc
Confidence 01
Q ss_pred cCCCCCCCCccceeeeccccccccccccccccccccccceeccccCccCcCCCCCCCCCCCcceEEEccCCCh-------
Q 043039 844 LGIEIIAFPRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKMLPDQVLRSTTLKKLEINDCPIL------- 916 (949)
Q Consensus 844 ~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l------- 916 (949)
.+..+..|.+|+.|...+++++.....+|..+..+++|+.|+|++|.....+|..+..+++|+.|++++|+.-
T Consensus 645 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~ 724 (768)
T 3rgz_A 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 724 (768)
T ss_dssp BSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSS
T ss_pred cccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCch
Confidence 1111222333333333333444444456677778888888888888666688888888888888888887421
Q ss_pred --h------------------HHhhhhcCCCCCccccCcccc
Q 043039 917 --E------------------KSFKEAAGDERSKISCIPIVI 938 (949)
Q Consensus 917 --~------------------~~~~~~~~~~~~~i~~i~~~~ 938 (949)
. ..|....+++|++++|+|++.
T Consensus 725 ~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 725 QFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp SGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred hhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 0 035666678898888888764
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=2.9e-25 Score=267.29 Aligned_cols=348 Identities=16% Similarity=0.165 Sum_probs=257.5
Q ss_pred cccCCceEEEEEeccCCC------------------Cccccc--CCCCceEEEecCCCCC-CcchhhccCCceeEEEeCC
Q 043039 538 ICYEKLRHSILVLHYNAS------------------FPVSIF--NAKKLRSLLIQGYSLQ-HMPSFFDQLTCLRALRIGK 596 (949)
Q Consensus 538 ~~~~~~r~l~l~~~~~~~------------------l~~~~~--~~~~Lr~L~l~~~~l~-~l~~~~~~l~~Lr~L~L~~ 596 (949)
....+++.+.+.++.+.. +|..+. ++++|++|++++|.+. .+|..|.++++|+.|+|++
T Consensus 445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524 (876)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence 345789999999998877 888877 9999999999999854 6898899999999999999
Q ss_pred ccccccc-cccccccCCC-------CCCeeeecccCCcccch--hhcCCCCCcEEeecCCCCCCccccccccCCCCCeee
Q 043039 597 YGDDAIE-RIPNGIEKLI-------HLRYLKLFFVGIEELPE--TFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLI 666 (949)
Q Consensus 597 ~~~~~~~-~lp~~i~~l~-------~L~~L~L~~~~i~~lp~--~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 666 (949)
|... .. .+|..++.+. +|++|+|++|.+..+|. .++++++|++|+|++|. +..+| .++.+++|++|+
T Consensus 525 N~~l-sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~ 601 (876)
T 4ecn_A 525 NRGI-SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLK 601 (876)
T ss_dssp CTTS-CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEE
T ss_pred CCCc-ccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEE
Confidence 8620 22 4777666665 99999999999999999 99999999999999998 66999 899999999999
Q ss_pred CCCcccccCCcCCCCCCC-CcccCccceecCCCccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcc--cCCC
Q 043039 667 FDEDDLDYMPKGMGSLTG-LRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAEL--EKKK 743 (949)
Q Consensus 667 l~~~~l~~~p~~i~~l~~-L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l--~~~~ 743 (949)
+++|.+..+|..+..+++ |+.|++..|... . . ...+..+.. ..|. .+.+....-.... ......+ ..++
T Consensus 602 Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~-l---p~~~~~~~~-~~L~-~L~Ls~N~l~g~i-p~l~~~l~~~~~~ 673 (876)
T 4ecn_A 602 LDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-Y-I---PNIFNAKSV-YVMG-SVDFSYNKIGSEG-RNISCSMDDYKGI 673 (876)
T ss_dssp CCSSCCSCCCTTSCEECTTCCEEECCSSCCC-S-C---CSCCCTTCS-SCEE-EEECCSSCTTTTS-SSCSSCTTTCCCC
T ss_pred CcCCccccchHHHhhccccCCEEECcCCCCC-c-C---chhhhcccc-CCCC-EEECcCCcCCCcc-ccchhhhccccCC
Confidence 999999999999999999 999986653211 1 1 111111111 0011 2333222110000 0000111 1345
Q ss_pred CCCeEEEEecCCCCcchhhhcHHHHhhc-CCCCCCcCceEEeccccCCCCCchhhcc--------cCCcEEEEeccCCCC
Q 043039 744 NLISLELEFDKEEEEDEDEVNHQAIIEA-LRPHPNLESLQISFYEVKARFPNWILSL--------NKLRMLCLSFCKKCE 814 (949)
Q Consensus 744 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~L~~~~~~~~~p~~~~~l--------~~L~~L~L~~~~~~~ 814 (949)
+|+.|++++|.+... +.. +..+++|+.|+|++|.+.. +|.++... ++|+.|+|++|.+..
T Consensus 674 ~L~~L~Ls~N~L~~l----------p~~~~~~l~~L~~L~Ls~N~L~~-ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~ 742 (876)
T 4ecn_A 674 NASTVTLSYNEIQKF----------PTELFATGSPISTIILSNNLMTS-IPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742 (876)
T ss_dssp CEEEEECCSSCCCSC----------CHHHHHTTCCCSEEECCSCCCSC-CCTTSSSCTTSCCTTGGGCCEEECCSSCCCC
T ss_pred CcCEEEccCCcCCcc----------CHHHHccCCCCCEEECCCCcCCc-cChHHhccccccccccCCccEEECCCCCCcc
Confidence 899999999988743 222 3467899999999999885 88876543 399999999998875
Q ss_pred CCCCCC--CCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceeeecccc---ccccccccccccccccccceeccccC
Q 043039 815 IMPPLG--KLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLD---GWEEWEFIEENITIMPQLNSLAIRDC 889 (949)
Q Consensus 815 ~~~~l~--~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~---~l~~~~~~~~~~~~l~~L~~L~l~~c 889 (949)
....+. .+++|+.|+|++|. +..++.. ...+++|+.|.+.+.. .+......|..+..+++|+.|+|++|
T Consensus 743 lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~-----l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 743 LSDDFRATTLPYLSNMDVSYNC-FSSFPTQ-----PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816 (876)
T ss_dssp CCGGGSTTTCTTCCEEECCSSC-CSSCCCG-----GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred chHHhhhccCCCcCEEEeCCCC-CCccchh-----hhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC
Confidence 444465 89999999999886 2222222 2267888888887633 23334556677889999999999999
Q ss_pred ccCcCCCCCCCCCCCcceEEEccCCCh
Q 043039 890 SKLKMLPDQVLRSTTLKKLEINDCPIL 916 (949)
Q Consensus 890 ~~l~~lp~~~~~l~~L~~L~l~~c~~l 916 (949)
.. +.+|..+. ++|+.|+|++|+..
T Consensus 817 ~L-~~Ip~~l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 817 DI-RKVDEKLT--PQLYILDIADNPNI 840 (876)
T ss_dssp CC-CBCCSCCC--SSSCEEECCSCTTC
T ss_pred CC-CccCHhhc--CCCCEEECCCCCCC
Confidence 55 99998755 59999999999854
No 7
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=8.2e-25 Score=254.93 Aligned_cols=344 Identities=17% Similarity=0.210 Sum_probs=204.9
Q ss_pred CCceEEEEEeccCCCCc-ccccCCCCceEEEecCCCCCCc-chhhccCCceeEEEeCCccccccccccccccCCCCCCee
Q 043039 541 EKLRHSILVLHYNASFP-VSIFNAKKLRSLLIQGYSLQHM-PSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYL 618 (949)
Q Consensus 541 ~~~r~l~l~~~~~~~l~-~~~~~~~~Lr~L~l~~~~l~~l-~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L 618 (949)
..++++.+.++.+..++ ..+..+++|++|++++|.+..+ |..|.++++|++|+|++|. +..+|.. .+++|++|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~---l~~lp~~--~l~~L~~L 95 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK---LVKISCH--PTVNLKHL 95 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC---CCEEECC--CCCCCSEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc---eeecCcc--ccCCccEE
Confidence 67888888888777664 4677888888888888888776 5678888888888888887 6677775 78888888
Q ss_pred eecccCCcc--cchhhcCCCCCcEEeecCCCCCCccccccccCCCC--CeeeCCCccc--c-cCCcCCCC----------
Q 043039 619 KLFFVGIEE--LPETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNL--RHLIFDEDDL--D-YMPKGMGS---------- 681 (949)
Q Consensus 619 ~L~~~~i~~--lp~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L--~~L~l~~~~l--~-~~p~~i~~---------- 681 (949)
++++|.+.. +|..++.+++|++|++++|. +.. ..+..+++| ++|++++|.+ . ..|..+..
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l 172 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred eccCCccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence 888888875 46788888888888888877 443 356777777 8888777766 2 33444433
Q ss_pred ----------------CCCCcccCccceecCCCc--cCCCccCcccccccc------------------------cCCCc
Q 043039 682 ----------------LTGLRTLSEFVAVSGGGK--YGSKACNLDGLRHMN------------------------HLRGS 719 (949)
Q Consensus 682 ----------------l~~L~~L~~~~~~~~~~~--~~~~~~~l~~L~~L~------------------------~L~~~ 719 (949)
+++|+.|++..+...... .......+..+..|. .+. .
T Consensus 173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~-~ 251 (520)
T 2z7x_B 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW-Y 251 (520)
T ss_dssp CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS-E
T ss_pred ccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCccc-E
Confidence 445555553331100000 000000001111000 111 1
Q ss_pred eEEccCC---C------------CC------------Chhhhhhh----------------------cccCCCCCCeEEE
Q 043039 720 LKIRGLG---N------------VT------------DVDAAKNA----------------------ELEKKKNLISLEL 750 (949)
Q Consensus 720 l~i~~~~---~------------l~------------~~~~~~~~----------------------~l~~~~~L~~L~l 750 (949)
+.+.+.. . +. .+...... ....+++|+.|++
T Consensus 252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L 331 (520)
T 2z7x_B 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDF 331 (520)
T ss_dssp EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEEC
T ss_pred EEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEe
Confidence 1111000 0 00 00000000 0134455555555
Q ss_pred EecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCC--CCCchhhcccCCcEEEEeccCCCCCCC--CCCCCCCcc
Q 043039 751 EFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKA--RFPNWILSLNKLRMLCLSFCKKCEIMP--PLGKLQSLE 826 (949)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~--~~p~~~~~l~~L~~L~L~~~~~~~~~~--~l~~l~~L~ 826 (949)
++|.+.+. .+..+..+++|+.|++++|.+.+ .+|.++..+++|+.|++++|.+...+| .+..+++|+
T Consensus 332 s~n~l~~~---------~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 332 SNNLLTDT---------VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CSSCCCTT---------TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred ECCccChh---------hhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence 55554432 34455566666666666666654 234455566666666666666555333 255666666
Q ss_pred eeeecCCCCcEEeCCcccCCCCCCC-CccceeeeccccccccccccccccccccccceeccccCccCcCCCCC-CCCCCC
Q 043039 827 VLDIWEMHGIKRVGDEVLGIEIIAF-PRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKMLPDQ-VLRSTT 904 (949)
Q Consensus 827 ~L~L~~~~~l~~~~~~~~~~~~~~f-~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~ 904 (949)
+|++++|. +. +..+..+ ++|+.|++.++ . +...|..+..+++|+.|++++| .++.+|.. +..+++
T Consensus 403 ~L~Ls~N~----l~----~~~~~~l~~~L~~L~Ls~N-~---l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~ 469 (520)
T 2z7x_B 403 SLNMSSNI----LT----DTIFRCLPPRIKVLDLHSN-K---IKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTS 469 (520)
T ss_dssp EEECCSSC----CC----GGGGGSCCTTCCEEECCSS-C---CCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred EEECcCCC----CC----cchhhhhcccCCEEECCCC-c---ccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCc
Confidence 66666654 11 1111123 57888887664 2 2244555668999999999998 67788876 778899
Q ss_pred cceEEEccCCC
Q 043039 905 LKKLEINDCPI 915 (949)
Q Consensus 905 L~~L~l~~c~~ 915 (949)
|+.|++++|+.
T Consensus 470 L~~L~l~~N~~ 480 (520)
T 2z7x_B 470 LQKIWLHTNPW 480 (520)
T ss_dssp CCEEECCSSCB
T ss_pred ccEEECcCCCC
Confidence 99999999874
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=5e-25 Score=261.55 Aligned_cols=346 Identities=16% Similarity=0.175 Sum_probs=256.9
Q ss_pred ccCCceEEEEEeccCCC------------------Cccccc--CCCCceEEEecCCCCC-CcchhhccCCceeEEEeCCc
Q 043039 539 CYEKLRHSILVLHYNAS------------------FPVSIF--NAKKLRSLLIQGYSLQ-HMPSFFDQLTCLRALRIGKY 597 (949)
Q Consensus 539 ~~~~~r~l~l~~~~~~~------------------l~~~~~--~~~~Lr~L~l~~~~l~-~l~~~~~~l~~Lr~L~L~~~ 597 (949)
...+++.+.+.++.... +|..+. ++++|++|++++|.+. .+|..|.++++|++|++++|
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 34788999999988877 888888 9999999999999865 57888999999999999998
Q ss_pred cccccc-cccccccCC------CCCCeeeecccCCcccch--hhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCC
Q 043039 598 GDDAIE-RIPNGIEKL------IHLRYLKLFFVGIEELPE--TFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFD 668 (949)
Q Consensus 598 ~~~~~~-~lp~~i~~l------~~L~~L~L~~~~i~~lp~--~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 668 (949)
... .. .+|..++.+ ++|++|++++|.++.+|. .++.+++|++|++++|.....+| .++.+++|++|+++
T Consensus 284 ~~l-~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~ 361 (636)
T 4eco_A 284 RGI-SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLA 361 (636)
T ss_dssp TTS-CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECC
T ss_pred CCC-ccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECC
Confidence 620 22 578888776 999999999999999998 89999999999999998444899 89999999999999
Q ss_pred CcccccCCcCCCCCCC-CcccCccceecCCCccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhccc-------
Q 043039 669 EDDLDYMPKGMGSLTG-LRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELE------- 740 (949)
Q Consensus 669 ~~~l~~~p~~i~~l~~-L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~------- 740 (949)
+|.++.+|..++.+++ |++|++..+... . . ...+..+. +..|. .+.+....- .. .....+.
T Consensus 362 ~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~-l---p~~~~~~~-l~~L~-~L~Ls~N~l-~~---~~p~~l~~~~~~~~ 430 (636)
T 4eco_A 362 YNQITEIPANFCGFTEQVENLSFAHNKLK-Y-I---PNIFDAKS-VSVMS-AIDFSYNEI-GS---VDGKNFDPLDPTPF 430 (636)
T ss_dssp SSEEEECCTTSEEECTTCCEEECCSSCCS-S-C---CSCCCTTC-SSCEE-EEECCSSCT-TT---TTTCSSCTTCSSCC
T ss_pred CCccccccHhhhhhcccCcEEEccCCcCc-c-c---chhhhhcc-cCccC-EEECcCCcC-CC---cchhhhcccccccc
Confidence 9999999999999999 999986653221 1 1 11111111 01111 233322211 10 0011222
Q ss_pred CCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhhcc--------cCCcEEEEeccCC
Q 043039 741 KKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWILSL--------NKLRMLCLSFCKK 812 (949)
Q Consensus 741 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l--------~~L~~L~L~~~~~ 812 (949)
.+++|+.|++++|.+... ....+..+++|+.|+|++|.+.. +|..+... ++|+.|+|++|.+
T Consensus 431 ~~~~L~~L~Ls~N~l~~l---------p~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 500 (636)
T 4eco_A 431 KGINVSSINLSNNQISKF---------PKELFSTGSPLSSINLMGNMLTE-IPKNSLKDENENFKNTYLLTSIDLRFNKL 500 (636)
T ss_dssp CCCCEEEEECCSSCCCSC---------CTHHHHTTCCCSEEECCSSCCSB-CCSSSSEETTEECTTGGGCCEEECCSSCC
T ss_pred cCCCCCEEECcCCccCcC---------CHHHHccCCCCCEEECCCCCCCC-cCHHHhccccccccccCCccEEECcCCcC
Confidence 567999999999987643 11223457899999999999985 88765532 3999999999988
Q ss_pred CCCCCCCC--CCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceeeecccc---ccccccccccccccccccceeccc
Q 043039 813 CEIMPPLG--KLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLD---GWEEWEFIEENITIMPQLNSLAIR 887 (949)
Q Consensus 813 ~~~~~~l~--~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~---~l~~~~~~~~~~~~l~~L~~L~l~ 887 (949)
......+. .+++|+.|+|++|. +..++..+ ..+++|+.|.+.+.. ++......|..+..+++|+.|+|+
T Consensus 501 ~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~-----~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls 574 (636)
T 4eco_A 501 TKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQP-----LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574 (636)
T ss_dssp CBCCGGGSTTTCTTCCEEECCSSC-CSSCCCGG-----GGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred CccChhhhhccCCCcCEEECCCCC-CCCcChhh-----hcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence 84444465 89999999999886 22232222 257888888886533 334445566778899999999999
Q ss_pred cCccCcCCCCCCCCCCCcceEEEccCCCh
Q 043039 888 DCSKLKMLPDQVLRSTTLKKLEINDCPIL 916 (949)
Q Consensus 888 ~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 916 (949)
+|.. +.+|..+. ++|+.|++++|+..
T Consensus 575 ~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 575 SNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp SSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred CCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 9954 89998755 79999999999753
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=8.3e-25 Score=263.37 Aligned_cols=328 Identities=15% Similarity=0.190 Sum_probs=248.7
Q ss_pred CcccccCCCCceEEEecCCCCCC------------------cchhhc--cCCceeEEEeCCccccccccccccccCCCCC
Q 043039 556 FPVSIFNAKKLRSLLIQGYSLQH------------------MPSFFD--QLTCLRALRIGKYGDDAIERIPNGIEKLIHL 615 (949)
Q Consensus 556 l~~~~~~~~~Lr~L~l~~~~l~~------------------l~~~~~--~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L 615 (949)
+|..+.++++|++|++++|.+.. +|..+. ++++|++|+|++|.. ...+|..++++++|
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l--~~~iP~~l~~L~~L 517 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN--MTQLPDFLYDLPEL 517 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT--CCSCCGGGGGCSSC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC--CccChHHHhCCCCC
Confidence 68889999999999999999988 888766 999999999999975 66789999999999
Q ss_pred CeeeecccC-Ccc--cchhhcCCC-------CCcEEeecCCCCCCcccc--ccccCCCCCeeeCCCcccccCCcCCCCCC
Q 043039 616 RYLKLFFVG-IEE--LPETFCELF-------NLQNLDLRRCSKFKRLPQ--NIGKLVNLRHLIFDEDDLDYMPKGMGSLT 683 (949)
Q Consensus 616 ~~L~L~~~~-i~~--lp~~l~~L~-------~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~l~~~p~~i~~l~ 683 (949)
++|+|++|. ++. +|..++.++ +|++|+|++|. +..+|. .++++++|++|++++|.+..+| .++.++
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~ 595 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNV 595 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTS
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCC
Confidence 999999998 874 898887766 99999999998 669999 9999999999999999999999 899999
Q ss_pred CCcccCccceecCCCccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCC--CCCCeEEEEecCCCCcchh
Q 043039 684 GLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKK--KNLISLELEFDKEEEEDED 761 (949)
Q Consensus 684 ~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~ 761 (949)
+|+.|++..|... .....+..+.. .|. .+.+.+.. +..+. ..+..+ ++|+.|++++|.+.+...
T Consensus 596 ~L~~L~Ls~N~l~-----~lp~~l~~l~~--~L~-~L~Ls~N~-L~~lp----~~~~~~~~~~L~~L~Ls~N~l~g~ip- 661 (876)
T 4ecn_A 596 KLTDLKLDYNQIE-----EIPEDFCAFTD--QVE-GLGFSHNK-LKYIP----NIFNAKSVYVMGSVDFSYNKIGSEGR- 661 (876)
T ss_dssp EESEEECCSSCCS-----CCCTTSCEECT--TCC-EEECCSSC-CCSCC----SCCCTTCSSCEEEEECCSSCTTTTSS-
T ss_pred cceEEECcCCccc-----cchHHHhhccc--cCC-EEECcCCC-CCcCc----hhhhccccCCCCEEECcCCcCCCccc-
Confidence 9999996653211 11223333333 033 44444322 22211 123333 459999999998764310
Q ss_pred hhcHHHHhhcCC--CCCCcCceEEeccccCCCCCchhh-cccCCcEEEEeccCCCCCCCCCC--------CCCCcceeee
Q 043039 762 EVNHQAIIEALR--PHPNLESLQISFYEVKARFPNWIL-SLNKLRMLCLSFCKKCEIMPPLG--------KLQSLEVLDI 830 (949)
Q Consensus 762 ~~~~~~~~~~l~--~~~~L~~L~L~~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~~~~l~--------~l~~L~~L~L 830 (949)
.++..+. .+++|+.|+|++|.+.. +|.++. .+++|+.|+|++|.+....+.+. ++++|+.|+|
T Consensus 662 -----~l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~L 735 (876)
T 4ecn_A 662 -----NISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL 735 (876)
T ss_dssp -----SCSSCTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEEC
T ss_pred -----cchhhhccccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEEC
Confidence 0111222 34589999999999996 898876 79999999999998774433322 3459999999
Q ss_pred cCCCCcEEeCCcccCCCCCCCCccceeeeccccccccccccccccccccccceecccc------CccCcCCCCCCCCCCC
Q 043039 831 WEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRD------CSKLKMLPDQVLRSTT 904 (949)
Q Consensus 831 ~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~------c~~l~~lp~~~~~l~~ 904 (949)
++|. +..++..+. ...+++|+.|++.++. +.. .|..+..+++|+.|+|++ |.....+|..+..+++
T Consensus 736 s~N~-L~~lp~~l~---~~~l~~L~~L~Ls~N~-L~~---lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~ 807 (876)
T 4ecn_A 736 RFNK-LTSLSDDFR---ATTLPYLSNMDVSYNC-FSS---FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS 807 (876)
T ss_dssp CSSC-CCCCCGGGS---TTTCTTCCEEECCSSC-CSS---CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSS
T ss_pred CCCC-CccchHHhh---hccCCCcCEEEeCCCC-CCc---cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCC
Confidence 9986 444433221 1257889999987742 332 466778999999999987 5556788999999999
Q ss_pred cceEEEccCCC
Q 043039 905 LKKLEINDCPI 915 (949)
Q Consensus 905 L~~L~l~~c~~ 915 (949)
|+.|++++|..
T Consensus 808 L~~L~Ls~N~L 818 (876)
T 4ecn_A 808 LIQLQIGSNDI 818 (876)
T ss_dssp CCEEECCSSCC
T ss_pred CCEEECCCCCC
Confidence 99999999976
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=6.3e-25 Score=260.69 Aligned_cols=324 Identities=15% Similarity=0.203 Sum_probs=251.4
Q ss_pred CcccccCCCCceEEEecCCCCCC------------------cchhhc--cCCceeEEEeCCccccccccccccccCCCCC
Q 043039 556 FPVSIFNAKKLRSLLIQGYSLQH------------------MPSFFD--QLTCLRALRIGKYGDDAIERIPNGIEKLIHL 615 (949)
Q Consensus 556 l~~~~~~~~~Lr~L~l~~~~l~~------------------l~~~~~--~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L 615 (949)
+|..+.++++|++|++++|.+.. +|..+. ++++|++|+|++|.. ...+|..++++++|
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l--~~~~p~~l~~l~~L 275 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN--LTKLPTFLKALPEM 275 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT--CSSCCTTTTTCSSC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC--CccChHHHhcCCCC
Confidence 58889999999999999999998 999888 999999999999985 56789999999999
Q ss_pred CeeeecccC-Cc--ccchhhcCC------CCCcEEeecCCCCCCcccc--ccccCCCCCeeeCCCcccc-cCCcCCCCCC
Q 043039 616 RYLKLFFVG-IE--ELPETFCEL------FNLQNLDLRRCSKFKRLPQ--NIGKLVNLRHLIFDEDDLD-YMPKGMGSLT 683 (949)
Q Consensus 616 ~~L~L~~~~-i~--~lp~~l~~L------~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~l~-~~p~~i~~l~ 683 (949)
++|++++|. ++ .+|..++.+ ++|++|++++|. +..+|. .++++++|++|++++|.+. .+| .++.++
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~ 353 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI 353 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence 999999998 88 489999887 999999999998 669999 8999999999999999999 899 999999
Q ss_pred CCcccCccceecCCCccCCCccCcccccc-cccCCCceEEccCCCCCChhhhhhhcccC--CCCCCeEEEEecCCCCcch
Q 043039 684 GLRTLSEFVAVSGGGKYGSKACNLDGLRH-MNHLRGSLKIRGLGNVTDVDAAKNAELEK--KKNLISLELEFDKEEEEDE 760 (949)
Q Consensus 684 ~L~~L~~~~~~~~~~~~~~~~~~l~~L~~-L~~L~~~l~i~~~~~l~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~ 760 (949)
+|+.|++..+... .....+..+.. |. .+.+.+.. +..+. ..+.. +++|+.|++++|.+.+.
T Consensus 354 ~L~~L~L~~N~l~-----~lp~~l~~l~~~L~----~L~Ls~N~-l~~lp----~~~~~~~l~~L~~L~Ls~N~l~~~-- 417 (636)
T 4eco_A 354 KLASLNLAYNQIT-----EIPANFCGFTEQVE----NLSFAHNK-LKYIP----NIFDAKSVSVMSAIDFSYNEIGSV-- 417 (636)
T ss_dssp EESEEECCSSEEE-----ECCTTSEEECTTCC----EEECCSSC-CSSCC----SCCCTTCSSCEEEEECCSSCTTTT--
T ss_pred CCCEEECCCCccc-----cccHhhhhhcccCc----EEEccCCc-Ccccc----hhhhhcccCccCEEECcCCcCCCc--
Confidence 9999986653221 11223333333 33 44443322 11111 12333 34899999999988764
Q ss_pred hhhcHHHHhhcCC-------CCCCcCceEEeccccCCCCCchhh-cccCCcEEEEeccCCCCCCCCCC--------CCCC
Q 043039 761 DEVNHQAIIEALR-------PHPNLESLQISFYEVKARFPNWIL-SLNKLRMLCLSFCKKCEIMPPLG--------KLQS 824 (949)
Q Consensus 761 ~~~~~~~~~~~l~-------~~~~L~~L~L~~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~~~~l~--------~l~~ 824 (949)
.+..+. .+++|+.|+|++|.+.. +|..+. .+++|+.|+|++|.+....+... .+++
T Consensus 418 -------~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~ 489 (636)
T 4eco_A 418 -------DGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489 (636)
T ss_dssp -------TTCSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGG
T ss_pred -------chhhhcccccccccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCC
Confidence 455565 66799999999999996 887765 58999999999998874333322 2349
Q ss_pred cceeeecCCCCcEEeCCcccCCCCCCCCccceeeeccccccccccccccccccccccceeccc------cCccCcCCCCC
Q 043039 825 LEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIR------DCSKLKMLPDQ 898 (949)
Q Consensus 825 L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~------~c~~l~~lp~~ 898 (949)
|++|+|++|. +..++..+. ...+++|+.|++.+.. +. ..|..+..+++|+.|+|+ +|.....+|..
T Consensus 490 L~~L~Ls~N~-l~~lp~~~~---~~~l~~L~~L~Ls~N~-l~---~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~ 561 (636)
T 4eco_A 490 LTSIDLRFNK-LTKLSDDFR---ATTLPYLVGIDLSYNS-FS---KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561 (636)
T ss_dssp CCEEECCSSC-CCBCCGGGS---TTTCTTCCEEECCSSC-CS---SCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT
T ss_pred ccEEECcCCc-CCccChhhh---hccCCCcCEEECCCCC-CC---CcChhhhcCCCCCEEECCCCcccccCcccccChHH
Confidence 9999999886 333433221 0257889998887642 22 256777899999999995 45567789999
Q ss_pred CCCCCCcceEEEccCCC
Q 043039 899 VLRSTTLKKLEINDCPI 915 (949)
Q Consensus 899 ~~~l~~L~~L~l~~c~~ 915 (949)
+..+++|+.|++++|..
T Consensus 562 l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 562 ITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp GGGCSSCCEEECCSSCC
T ss_pred HhcCCCCCEEECCCCcC
Confidence 99999999999999986
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=1.4e-24 Score=258.07 Aligned_cols=133 Identities=17% Similarity=0.204 Sum_probs=102.7
Q ss_pred CCceEEEEEeccCCCCcc-cccCCCCceEEEecCCCCCCc-chhhccCCceeEEEeCCccccccccc-cccccCCCCCCe
Q 043039 541 EKLRHSILVLHYNASFPV-SIFNAKKLRSLLIQGYSLQHM-PSFFDQLTCLRALRIGKYGDDAIERI-PNGIEKLIHLRY 617 (949)
Q Consensus 541 ~~~r~l~l~~~~~~~l~~-~~~~~~~Lr~L~l~~~~l~~l-~~~~~~l~~Lr~L~L~~~~~~~~~~l-p~~i~~l~~L~~ 617 (949)
..++.+.+.++....++. .+.++++|++|++++|.+..+ |..|.++++|++|+|++|. +..+ |..++++++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~---l~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP---IQSFSPGSFSGLTSLEN 108 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC---CCCCCTTSSTTCTTCCE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc---ccccChhhcCCcccCCE
Confidence 678888888877766543 677888888888888888776 5567888888888888887 6555 677888888888
Q ss_pred eeecccCCcccc-hhhcCCCCCcEEeecCCCCCC-ccccccccCCCCCeeeCCCcccccCC
Q 043039 618 LKLFFVGIEELP-ETFCELFNLQNLDLRRCSKFK-RLPQNIGKLVNLRHLIFDEDDLDYMP 676 (949)
Q Consensus 618 L~L~~~~i~~lp-~~l~~L~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~~~l~~~p 676 (949)
|++++|.+..+| ..++++++|++|++++|.... .+|..++++++|++|++++|.++.++
T Consensus 109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp EECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred EEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence 888888887776 668888888888888877333 57888888888888888877776553
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=6.4e-25 Score=267.03 Aligned_cols=344 Identities=21% Similarity=0.172 Sum_probs=246.0
Q ss_pred ccCCceEEEEEeccCCCCcccccCCCCceEEEecCCCCC-CcchhhccCCceeEEEeCCccccccccccccccCCCCCCe
Q 043039 539 CYEKLRHSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQ-HMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRY 617 (949)
Q Consensus 539 ~~~~~r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~-~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~ 617 (949)
...+++.+.+.++.....++.+..+++|++|++++|.+. .+|..+..+++|++|++++|.. ...+|.. .+++|++
T Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l--~~~~~~~--~l~~L~~ 273 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF--VGPIPPL--PLKSLQY 273 (768)
T ss_dssp TCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCC--EESCCCC--CCTTCCE
T ss_pred cCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcc--cCccCcc--ccCCCCE
Confidence 346788888888877654445888899999999998887 4677788889999999988873 2234442 7888999
Q ss_pred eeecccCCc-ccchhhcCC-CCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccc-cCCcC-CCCCCCCcccCccce
Q 043039 618 LKLFFVGIE-ELPETFCEL-FNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLD-YMPKG-MGSLTGLRTLSEFVA 693 (949)
Q Consensus 618 L~L~~~~i~-~lp~~l~~L-~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~-~~p~~-i~~l~~L~~L~~~~~ 693 (949)
|++++|.+. .+|..+..+ ++|++|++++|.....+|..++++++|++|++++|.+. .+|.. ++.+++|+.|++..+
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence 999988887 778887765 88999999988855678888899999999998888887 77765 888888998886553
Q ss_pred ecCCCccCCCccCccccc-ccccCCCceEEccCCCCCChhhhhhhccc--CCCCCCeEEEEecCCCCcchhhhcHHHHhh
Q 043039 694 VSGGGKYGSKACNLDGLR-HMNHLRGSLKIRGLGNVTDVDAAKNAELE--KKKNLISLELEFDKEEEEDEDEVNHQAIIE 770 (949)
Q Consensus 694 ~~~~~~~~~~~~~l~~L~-~L~~L~~~l~i~~~~~l~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 770 (949)
.... .....+..+. .|. .+.+....- .......+. .+++|+.|+++.|.+.+. ++.
T Consensus 354 ~l~~----~~p~~l~~l~~~L~----~L~Ls~N~l----~~~~~~~~~~~~~~~L~~L~L~~n~l~~~---------~p~ 412 (768)
T 3rgz_A 354 EFSG----ELPESLTNLSASLL----TLDLSSNNF----SGPILPNLCQNPKNTLQELYLQNNGFTGK---------IPP 412 (768)
T ss_dssp EEEE----CCCTTHHHHTTTCS----EEECCSSEE----EEECCTTTTCSTTCCCCEEECCSSEEEEE---------CCG
T ss_pred ccCc----cccHHHHhhhcCCc----EEEccCCCc----CCCcChhhhhcccCCccEEECCCCccccc---------cCH
Confidence 2111 1122232222 222 232222110 000001122 267889999888876643 566
Q ss_pred cCCCCCCcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCCCCCC-CCCCCCcceeeecCCCCcEEeCCcccCCCCC
Q 043039 771 ALRPHPNLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMPP-LGKLQSLEVLDIWEMHGIKRVGDEVLGIEII 849 (949)
Q Consensus 771 ~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 849 (949)
.+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|. ++.+++|++|++++|.-...++.. ..
T Consensus 413 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-----l~ 487 (768)
T 3rgz_A 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-----LS 487 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-----GG
T ss_pred HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH-----Hh
Confidence 777888999999999988877888888999999999999988876665 788899999999887622111111 12
Q ss_pred CCCccceeeeccccccccccccccccccccccceeccccCccCcCCCCCCCCCCCcceEEEccCCC
Q 043039 850 AFPRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKMLPDQVLRSTTLKKLEINDCPI 915 (949)
Q Consensus 850 ~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 915 (949)
.+++|+.|++.++ ......|..+..+++|+.|+|++|+....+|..+..+++|+.|++++|+.
T Consensus 488 ~l~~L~~L~L~~N---~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 488 NCTNLNWISLSNN---RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp GCTTCCEEECCSS---CCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred cCCCCCEEEccCC---ccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 4566777766553 33334566677899999999999976668888888899999999998864
No 13
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=4e-24 Score=251.17 Aligned_cols=152 Identities=18% Similarity=0.209 Sum_probs=89.1
Q ss_pred CCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCC---chhhcccCCcEEEEeccCCCCCCC
Q 043039 741 KKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFP---NWILSLNKLRMLCLSFCKKCEIMP 817 (949)
Q Consensus 741 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p---~~~~~l~~L~~L~L~~~~~~~~~~ 817 (949)
.+++|+.|++++|.+.+. .+..+..+++|+.|++++|.+.+ ++ ..+..+++|+.|++++|.+...+|
T Consensus 351 ~l~~L~~L~l~~n~l~~~---------~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 420 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDS---------VFQGCSTLKRLQTLILQRNGLKN-FFKVALMTKNMSSLETLDVSLNSLNSHAY 420 (562)
T ss_dssp SCCCCCEEECCSSCCCTT---------TTTTCCSCSSCCEEECCSSCCCB-TTHHHHTTTTCTTCCEEECTTSCCBSCCS
T ss_pred CCCCceEEECCCCccccc---------hhhhhcccCCCCEEECCCCCcCC-cccchhhhcCCCCCCEEECCCCcCCCccC
Confidence 444555555555544432 33445555556666665555554 22 334455566666666655544232
Q ss_pred C--CCCCCCcceeeecCCCCcEEeCCcccCCCCCCC-CccceeeeccccccccccccccccccccccceeccccCccCcC
Q 043039 818 P--LGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAF-PRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKM 894 (949)
Q Consensus 818 ~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f-~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 894 (949)
. +..+++|++|++++|. +. +..+..+ ++|+.|++.+. .+ ...|..+..+++|+.|++++| .++.
T Consensus 421 ~~~~~~l~~L~~L~l~~n~----l~----~~~~~~l~~~L~~L~L~~N-~l---~~ip~~~~~l~~L~~L~L~~N-~l~~ 487 (562)
T 3a79_B 421 DRTCAWAESILVLNLSSNM----LT----GSVFRCLPPKVKVLDLHNN-RI---MSIPKDVTHLQALQELNVASN-QLKS 487 (562)
T ss_dssp SCCCCCCTTCCEEECCSSC----CC----GGGGSSCCTTCSEEECCSS-CC---CCCCTTTTSSCCCSEEECCSS-CCCC
T ss_pred hhhhcCcccCCEEECCCCC----CC----cchhhhhcCcCCEEECCCC-cC---cccChhhcCCCCCCEEECCCC-CCCC
Confidence 2 4555666666665554 11 1111233 57777777654 22 244455668889999999888 6778
Q ss_pred CCCC-CCCCCCcceEEEccCCC
Q 043039 895 LPDQ-VLRSTTLKKLEINDCPI 915 (949)
Q Consensus 895 lp~~-~~~l~~L~~L~l~~c~~ 915 (949)
+|.. +..+++|+.|++++||-
T Consensus 488 l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 488 VPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp CCTTSTTTCTTCCCEECCSCCB
T ss_pred CCHHHHhcCCCCCEEEecCCCc
Confidence 8876 77888999999998874
No 14
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=8.2e-24 Score=232.71 Aligned_cols=304 Identities=17% Similarity=0.227 Sum_probs=230.7
Q ss_pred ccCCceEEEEEeccCCCCcccccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCee
Q 043039 539 CYEKLRHSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYL 618 (949)
Q Consensus 539 ~~~~~r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L 618 (949)
.++.++++.+.++....++ .+..+++|++|++++|.+..++. +..+++|++|++++|. +..+| .+..+++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~---i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK---ITDIS-ALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC---CCCCG-GGTTCTTCSEE
T ss_pred hcccccEEEEeCCccccch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc---ccCch-HHcCCCcCCEE
Confidence 3477888888888777755 47788999999999999888877 8899999999999987 66665 48899999999
Q ss_pred eecccCCcccchhhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccccCCcCCCCCCCCcccCccceecCCC
Q 043039 619 KLFFVGIEELPETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEFVAVSGGG 698 (949)
Q Consensus 619 ~L~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~ 698 (949)
++++|.+..+|. +..+++|++|++++|.....++ .+..+++|++|++++|.+..++. +..+++|+.|++..+ .
T Consensus 116 ~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n----~ 188 (347)
T 4fmz_A 116 YLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYN----Q 188 (347)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTS----C
T ss_pred ECcCCcccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCC----c
Confidence 999999988876 8889999999999987666655 48889999999998888887765 778888888874431 1
Q ss_pred ccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCc
Q 043039 699 KYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNL 778 (949)
Q Consensus 699 ~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L 778 (949)
+ ... ..+..+++|+.|++++|..... ..+..+++|
T Consensus 189 -----------------l------------~~~-----~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~~~~L 223 (347)
T 4fmz_A 189 -----------------I------------EDI-----SPLASLTSLHYFTAYVNQITDI-----------TPVANMTRL 223 (347)
T ss_dssp -----------------C------------CCC-----GGGGGCTTCCEEECCSSCCCCC-----------GGGGGCTTC
T ss_pred -----------------c------------ccc-----ccccCCCccceeecccCCCCCC-----------chhhcCCcC
Confidence 0 000 0144567888888888876643 115667889
Q ss_pred CceEEeccccCCCCCchhhcccCCcEEEEeccCCCCCCCCCCCCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceee
Q 043039 779 ESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMPPLGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFT 858 (949)
Q Consensus 779 ~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~ 858 (949)
+.|++++|.+.. +|. +..+++|+.|++++|.+.. ++.+..+++|++|++++|. +..++ ....+++|+.|.
T Consensus 224 ~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~-l~~~~------~~~~l~~L~~L~ 293 (347)
T 4fmz_A 224 NSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQ-ISDIS------VLNNLSQLNSLF 293 (347)
T ss_dssp CEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC-CCCCG------GGGGCTTCSEEE
T ss_pred CEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-ChhHhcCCCcCEEEccCCc-cCCCh------hhcCCCCCCEEE
Confidence 999999998877 555 7788999999999987655 4668888999999998875 33221 123578888888
Q ss_pred eccccccccccccccccccccccceeccccCccCcCCCCCCCCCCCcceEEEccCCC
Q 043039 859 LWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKMLPDQVLRSTTLKKLEINDCPI 915 (949)
Q Consensus 859 l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 915 (949)
+.++. + ....|..+..+++|+.|++++|+ ++.++. +..+++|+.|++++|+.
T Consensus 294 L~~n~-l--~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 294 LNNNQ-L--GNEDMEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp CCSSC-C--CGGGHHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC--
T ss_pred CcCCc-C--CCcChhHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhcc
Confidence 87653 2 22333556789999999999996 555554 67899999999999974
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=3.2e-24 Score=245.53 Aligned_cols=361 Identities=16% Similarity=0.126 Sum_probs=210.3
Q ss_pred CCceEEEEEeccCCCC-cccccCCCCceEEEecCCCCC-Cc-chhhccCCceeEEEeCCccccccccc-cccccCCCCCC
Q 043039 541 EKLRHSILVLHYNASF-PVSIFNAKKLRSLLIQGYSLQ-HM-PSFFDQLTCLRALRIGKYGDDAIERI-PNGIEKLIHLR 616 (949)
Q Consensus 541 ~~~r~l~l~~~~~~~l-~~~~~~~~~Lr~L~l~~~~l~-~l-~~~~~~l~~Lr~L~L~~~~~~~~~~l-p~~i~~l~~L~ 616 (949)
..++++.+.++.+..+ |..+.++++|++|++++|.+. .+ +..|.++++|++|+|++|. +..+ |..++++++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~ 106 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ---FLQLETGAFNGLANLE 106 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT---TCEECTTTTTTCTTCC
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc---cCccChhhccCcccCC
Confidence 5667777766665544 455666777777777777654 33 3456667777777777766 4443 55667777777
Q ss_pred eeeecccCCcc-cchh--hcCCCCCcEEeecCCCCCCccccc-cccCCCCCeeeCCCcccccCC-cCCCCC--CCCcccC
Q 043039 617 YLKLFFVGIEE-LPET--FCELFNLQNLDLRRCSKFKRLPQN-IGKLVNLRHLIFDEDDLDYMP-KGMGSL--TGLRTLS 689 (949)
Q Consensus 617 ~L~L~~~~i~~-lp~~--l~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~~p-~~i~~l--~~L~~L~ 689 (949)
+|++++|.+.. +|.. +..+++|++|++++|......|.. +.++++|++|++++|.+..++ ..+..+ .+|+.|+
T Consensus 107 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~ 186 (455)
T 3v47_A 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186 (455)
T ss_dssp EEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEE
T ss_pred EEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccc
Confidence 77777777663 3333 666777777777776633333444 566777777777766666543 334433 3455554
Q ss_pred ccceecCCCccCC-CccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcH-HH
Q 043039 690 EFVAVSGGGKYGS-KACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNH-QA 767 (949)
Q Consensus 690 ~~~~~~~~~~~~~-~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~ 767 (949)
+..+......... .......+..+..|+ .+.+.+.. +..............++|+.|.++.|............ ..
T Consensus 187 l~~n~l~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~-l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 264 (455)
T 3v47_A 187 LSSITLQDMNEYWLGWEKCGNPFKNTSIT-TLDLSGNG-FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264 (455)
T ss_dssp CTTCBCTTCSTTCTTHHHHCCTTTTCEEE-EEECTTSC-CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCC
T ss_pred cccCcccccchhhccccccccccccceee-eEecCCCc-ccccchhhhhccccccceeeEeeccccccccccchhhhccC
Confidence 3321100000000 000000000111111 22222211 11111111111122356666666555332210000000 00
Q ss_pred HhhcCC--CCCCcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCCCCC-CCCCCCCcceeeecCCCCcEEeCCccc
Q 043039 768 IIEALR--PHPNLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMP-PLGKLQSLEVLDIWEMHGIKRVGDEVL 844 (949)
Q Consensus 768 ~~~~l~--~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~~~~~~ 844 (949)
....+. ..++|+.|++++|.+.+..|.++..+++|+.|+|++|.+....+ .++.+++|++|+|++|. +..+.....
T Consensus 265 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 343 (455)
T 3v47_A 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDSRMF 343 (455)
T ss_dssp CTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGG
T ss_pred cccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cCCcChhHh
Confidence 000011 23689999999999998778899999999999999999887766 48999999999999886 444432222
Q ss_pred CCCCCCCCccceeeeccccccccccccccccccccccceeccccCccCcCCCCC-CCCCCCcceEEEccCCC
Q 043039 845 GIEIIAFPRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKMLPDQ-VLRSTTLKKLEINDCPI 915 (949)
Q Consensus 845 ~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~ 915 (949)
..+++|+.|++.++ ......|..+..+++|++|++++| .++.+|.. +..+++|+.|++++|+.
T Consensus 344 ----~~l~~L~~L~Ls~N---~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 344 ----ENLDKLEVLDLSYN---HIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp ----TTCTTCCEEECCSS---CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ----cCcccCCEEECCCC---cccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCc
Confidence 25778888888764 223333566788999999999998 67777764 57899999999998764
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=4.6e-24 Score=253.69 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=89.8
Q ss_pred cCCCCCCcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCC-CCC-CCCCCCCcceeeecCCCCcEEeCCcccCCCC
Q 043039 771 ALRPHPNLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCE-IMP-PLGKLQSLEVLDIWEMHGIKRVGDEVLGIEI 848 (949)
Q Consensus 771 ~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~-~~~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 848 (949)
.+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+ .+| .++.+++|++|++++|. +....... .
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~----~ 493 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWGV----F 493 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTT----T
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc-CCccChhh----h
Confidence 45556667777777666666556666667777777777776654 233 36677777777777765 22222211 1
Q ss_pred CCCCccceeeeccccccccccccccccccccccceeccccCccCcCCCCCCCCCC-CcceEEEccCCC
Q 043039 849 IAFPRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKMLPDQVLRST-TLKKLEINDCPI 915 (949)
Q Consensus 849 ~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~-~L~~L~l~~c~~ 915 (949)
..+++|+.|++.++ ......|..+..+++|+.|+|++| .++.+|..+..++ +|+.|++++||.
T Consensus 494 ~~l~~L~~L~Ls~N---~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 494 DTLHRLQLLNMSHN---NLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp TTCTTCCEEECCSS---CCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred cccccCCEEECCCC---cCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCCc
Confidence 24566777776654 223334566778899999999988 5778888877776 599999998875
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=1.6e-23 Score=234.11 Aligned_cols=303 Identities=19% Similarity=0.209 Sum_probs=194.7
Q ss_pred CCCceEEEecCCCCCCcch-hhccCCceeEEEeCCccccccccccc-cccCCCCCCeeeecccCCcccc-hhhcCCCCCc
Q 043039 563 AKKLRSLLIQGYSLQHMPS-FFDQLTCLRALRIGKYGDDAIERIPN-GIEKLIHLRYLKLFFVGIEELP-ETFCELFNLQ 639 (949)
Q Consensus 563 ~~~Lr~L~l~~~~l~~l~~-~~~~l~~Lr~L~L~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp-~~l~~L~~L~ 639 (949)
+++++.|+++++.+..+|. .|..+++|++|++++|. +..++. .+..+++|++|++++|.+..+| ..+..+++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCc---ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 4566666666666666554 34566666666666665 444432 5666666666666666666554 3356666666
Q ss_pred EEeecCCCCCCcccccc-ccCCCCCeeeCCCcccccCCc-CCCCCCCCcccCccceecCCCccCCCccCcccccccccCC
Q 043039 640 NLDLRRCSKFKRLPQNI-GKLVNLRHLIFDEDDLDYMPK-GMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLR 717 (949)
Q Consensus 640 ~L~L~~~~~l~~lp~~i-~~L~~L~~L~l~~~~l~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 717 (949)
+|++++|. +..+|..+ ..+++|++|++++|.+..++. .++.+++|++|++..+ ..... .+..+.. +.
T Consensus 121 ~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n----~l~~~---~~~~l~~---L~ 189 (390)
T 3o6n_A 121 VLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN----RLTHV---DLSLIPS---LF 189 (390)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS----CCSBC---CGGGCTT---CS
T ss_pred EEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC----cCCcc---ccccccc---cc
Confidence 66666665 55555543 566666666666666665533 3566666666654331 11000 1111111 11
Q ss_pred CceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhh
Q 043039 718 GSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWIL 797 (949)
Q Consensus 718 ~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~ 797 (949)
.+.+... .+ ..+...++|+.|++++|.+... + ...+++|+.|++++|.+.+ +.++.
T Consensus 190 -~L~l~~n-~l--------~~~~~~~~L~~L~l~~n~l~~~----------~--~~~~~~L~~L~l~~n~l~~--~~~l~ 245 (390)
T 3o6n_A 190 -HANVSYN-LL--------STLAIPIAVEELDASHNSINVV----------R--GPVNVELTILKLQHNNLTD--TAWLL 245 (390)
T ss_dssp -EEECCSS-CC--------SEEECCSSCSEEECCSSCCCEE----------E--CCCCSSCCEEECCSSCCCC--CGGGG
T ss_pred -eeecccc-cc--------cccCCCCcceEEECCCCeeeec----------c--ccccccccEEECCCCCCcc--cHHHc
Confidence 2222111 01 1133446789999998877642 1 1235789999999999887 36788
Q ss_pred cccCCcEEEEeccCCCCCCCC-CCCCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceeeeccccccccccccccccc
Q 043039 798 SLNKLRMLCLSFCKKCEIMPP-LGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEWEFIEENIT 876 (949)
Q Consensus 798 ~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~ 876 (949)
.+++|+.|+|++|.+....+. ++.+++|++|+|++|. +..++... ..+|+|+.|++.++. +. ..|..+.
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-----~~l~~L~~L~L~~n~-l~---~~~~~~~ 315 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG-----QPIPTLKVLDLSHNH-LL---HVERNQP 315 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSS-----SCCTTCCEEECCSSC-CC---CCGGGHH
T ss_pred CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCccc-----CCCCCCCEEECCCCc-ce---ecCcccc
Confidence 999999999999988776554 8899999999999876 44443221 368899999998752 33 3345567
Q ss_pred cccccceeccccCccCcCCCCCCCCCCCcceEEEccCCCh
Q 043039 877 IMPQLNSLAIRDCSKLKMLPDQVLRSTTLKKLEINDCPIL 916 (949)
Q Consensus 877 ~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 916 (949)
.+++|+.|++++| .++.+| +..+++|+.|++++|+.-
T Consensus 316 ~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 316 QFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp HHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred ccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCCcc
Confidence 8999999999999 467676 467889999999999853
No 18
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=2.2e-23 Score=238.74 Aligned_cols=322 Identities=18% Similarity=0.274 Sum_probs=217.2
Q ss_pred ccCCceEEEEEeccCCCCcccccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCee
Q 043039 539 CYEKLRHSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYL 618 (949)
Q Consensus 539 ~~~~~r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L 618 (949)
.+..++.+.+.++....++. +..+++|++|++++|.+..++. +..+++|++|++++|. +..++. +.++++|++|
T Consensus 66 ~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~---l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ---ITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC---CCCCGG-GTTCTTCSEE
T ss_pred hhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCC---CCCChH-HcCCCCCCEE
Confidence 34667777777766666554 6677777777777777766665 6677777777777776 555554 6777777777
Q ss_pred eecccCCcccchhhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccccCCcCCCCCCCCcccCccceecCCC
Q 043039 619 KLFFVGIEELPETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEFVAVSGGG 698 (949)
Q Consensus 619 ~L~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~ 698 (949)
++++|.+..+| .+..+++|++|++++ . +..++. +.++++|++|++++|.+..++ .+..+++|+.|++..+ .
T Consensus 140 ~l~~n~l~~~~-~~~~l~~L~~L~l~~-~-~~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n----~ 210 (466)
T 1o6v_A 140 ELSSNTISDIS-ALSGLTSLQQLSFGN-Q-VTDLKP-LANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNN----Q 210 (466)
T ss_dssp EEEEEEECCCG-GGTTCTTCSEEEEEE-S-CCCCGG-GTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSS----C
T ss_pred ECCCCccCCCh-hhccCCcccEeecCC-c-ccCchh-hccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCC----c
Confidence 77777766665 366777777777753 2 333433 777788888888777777664 4677777887775442 1
Q ss_pred ccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCc
Q 043039 699 KYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNL 778 (949)
Q Consensus 699 ~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L 778 (949)
. ..+..+..++.|. .+.+.+.. +..+ ..+..+++|+.|++++|.+... . .+..+++|
T Consensus 211 l-----~~~~~~~~l~~L~-~L~l~~n~-l~~~-----~~l~~l~~L~~L~l~~n~l~~~----------~-~~~~l~~L 267 (466)
T 1o6v_A 211 I-----SDITPLGILTNLD-ELSLNGNQ-LKDI-----GTLASLTNLTDLDLANNQISNL----------A-PLSGLTKL 267 (466)
T ss_dssp C-----CCCGGGGGCTTCC-EEECCSSC-CCCC-----GGGGGCTTCSEEECCSSCCCCC----------G-GGTTCTTC
T ss_pred c-----cccccccccCCCC-EEECCCCC-cccc-----hhhhcCCCCCEEECCCCccccc----------h-hhhcCCCC
Confidence 1 1111122233333 44444332 2221 2466788899999988877653 1 26678889
Q ss_pred CceEEeccccCCCCCchhhcccCCcEEEEeccCCCCCCCCCCCCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceee
Q 043039 779 ESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMPPLGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFT 858 (949)
Q Consensus 779 ~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~ 858 (949)
+.|++++|.+.+ +|. +..+++|+.|++++|.+.... .++.+++|+.|++++|. +..... ...+++|+.|.
T Consensus 268 ~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~L~~n~-l~~~~~------~~~l~~L~~L~ 337 (466)
T 1o6v_A 268 TELKLGANQISN-ISP-LAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNN-ISDISP------VSSLTKLQRLF 337 (466)
T ss_dssp SEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSCCG-GGGGCTTCSEEECCSSC-CSCCGG------GGGCTTCCEEE
T ss_pred CEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccCch-hhcCCCCCCEEECcCCc-CCCchh------hccCccCCEeE
Confidence 999999998887 555 778899999999999776543 37888999999998886 222211 23678888888
Q ss_pred eccccccccccccccccccccccceeccccCccCcCCCCCCCCCCCcceEEEccCCC
Q 043039 859 LWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKMLPDQVLRSTTLKKLEINDCPI 915 (949)
Q Consensus 859 l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 915 (949)
+.++ .+... ..+..+++|+.|++++|+.....| +..+++|+.|++++|+.
T Consensus 338 l~~n-~l~~~----~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 338 FYNN-KVSDV----SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 387 (466)
T ss_dssp CCSS-CCCCC----GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEE
T ss_pred CCCC-ccCCc----hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcc
Confidence 8775 23332 246689999999999995544444 67889999999999864
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=1.5e-23 Score=241.31 Aligned_cols=313 Identities=19% Similarity=0.227 Sum_probs=211.5
Q ss_pred eEEEEEeccCCCCcccccCCCCceEEEecCCCCCCc-chhhccCCceeEEEeCCccccccccc-cccccCCCCCCeeeec
Q 043039 544 RHSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHM-PSFFDQLTCLRALRIGKYGDDAIERI-PNGIEKLIHLRYLKLF 621 (949)
Q Consensus 544 r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l-~~~~~~l~~Lr~L~L~~~~~~~~~~l-p~~i~~l~~L~~L~L~ 621 (949)
+.+.........+|..+ .++++.|++++|.++.+ +..|.++++|++|+|++|. +..+ |..++++++|++|+|+
T Consensus 14 ~~v~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI---VSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCCSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCcCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCc---cCEeChhhhhCCccCCEEECC
Confidence 34444445555666554 36889999999998877 4578889999999999887 6665 6778899999999999
Q ss_pred ccCCcccchh-hcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccccCC-cCCCCCCCCcccCccceecCCCc
Q 043039 622 FVGIEELPET-FCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMP-KGMGSLTGLRTLSEFVAVSGGGK 699 (949)
Q Consensus 622 ~~~i~~lp~~-l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p-~~i~~l~~L~~L~~~~~~~~~~~ 699 (949)
+|.+..+|.. +.++++|++|+|++|......|..+..+++|++|++++|.+..++ ..+..+++|+.|++..+ .
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n----~- 163 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC----N- 163 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC----C-
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC----c-
Confidence 9999888764 688999999999998854455677888999999999888888664 46888888888874431 1
Q ss_pred cCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcC
Q 043039 700 YGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLE 779 (949)
Q Consensus 700 ~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 779 (949)
+. .+ ....+..+++|+.|+++.|.+... ....+..+++|+
T Consensus 164 ----------------l~------------~~---~~~~l~~l~~L~~L~l~~n~i~~~---------~~~~~~~l~~L~ 203 (477)
T 2id5_A 164 ----------------LT------------SI---PTEALSHLHGLIVLRLRHLNINAI---------RDYSFKRLYRLK 203 (477)
T ss_dssp ----------------CS------------SC---CHHHHTTCTTCCEEEEESCCCCEE---------CTTCSCSCTTCC
T ss_pred ----------------Cc------------cc---ChhHhcccCCCcEEeCCCCcCcEe---------ChhhcccCcccc
Confidence 00 00 011244566777777777766543 233566667777
Q ss_pred ceEEeccccCCCCCchhhcccCCcEEEEeccCCCCCCC-CCCCCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceee
Q 043039 780 SLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMP-PLGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFT 858 (949)
Q Consensus 780 ~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~ 858 (949)
.|++++|...+.+|.......+|+.|+|++|.+....+ .++.+++|+.|+|+++. +..++.... ..+++|+.|.
T Consensus 204 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~----~~l~~L~~L~ 278 (477)
T 2id5_A 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSML----HELLRLQEIQ 278 (477)
T ss_dssp EEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSC----TTCTTCCEEE
T ss_pred eeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccChhhc----cccccCCEEE
Confidence 77777776666566666666677777777776654332 26677777777777665 333332211 2456666666
Q ss_pred eccccccccccccccccccccccceeccccCccCcCCCC-CCCCCCCcceEEEccCCC
Q 043039 859 LWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKMLPD-QVLRSTTLKKLEINDCPI 915 (949)
Q Consensus 859 l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~ 915 (949)
+.+. ......|..+..+++|+.|+|++| .++.+|. .+..+++|+.|++++|+.
T Consensus 279 L~~n---~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 279 LVGG---QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp CCSS---CCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred CCCC---ccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCCc
Confidence 6542 222233445667778888888777 5565654 345677788888877763
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=2.7e-23 Score=245.37 Aligned_cols=303 Identities=18% Similarity=0.211 Sum_probs=208.5
Q ss_pred CCCCceEEEecCCCCCCcch-hhccCCceeEEEeCCcccccccccc-ccccCCCCCCeeeecccCCcccch-hhcCCCCC
Q 043039 562 NAKKLRSLLIQGYSLQHMPS-FFDQLTCLRALRIGKYGDDAIERIP-NGIEKLIHLRYLKLFFVGIEELPE-TFCELFNL 638 (949)
Q Consensus 562 ~~~~Lr~L~l~~~~l~~l~~-~~~~l~~Lr~L~L~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~l~~L~~L 638 (949)
.+.+++.|++++|.+..+|. .|..+++|++|+|++|. +..+| ..++.+++|++|+|++|.+..+|+ .++.+++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC---CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 35667777777777776654 45677777777777776 55554 367777777777777777776654 35777777
Q ss_pred cEEeecCCCCCCccccc-cccCCCCCeeeCCCcccccCCc-CCCCCCCCcccCccceecCCCccCCCccCcccccccccC
Q 043039 639 QNLDLRRCSKFKRLPQN-IGKLVNLRHLIFDEDDLDYMPK-GMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHL 716 (949)
Q Consensus 639 ~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L 716 (949)
++|+|++|. +..+|.. ++.+++|++|++++|.+..++. .++.+++|++|++..+ ..... .+..+..|
T Consensus 126 ~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N----~l~~~---~~~~l~~L--- 194 (597)
T 3oja_B 126 TVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN----RLTHV---DLSLIPSL--- 194 (597)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS----CCSBC---CGGGCTTC---
T ss_pred CEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC----CCCCc---Chhhhhhh---
Confidence 777777776 5566655 3677777777777777776654 4677777777765442 11100 11112222
Q ss_pred CCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchh
Q 043039 717 RGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWI 796 (949)
Q Consensus 717 ~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~ 796 (949)
. .+.+.+. .+ ..+....+|+.|++++|.+... +. ..+++|+.|+|++|.+.+ +.++
T Consensus 195 ~-~L~l~~n-~l--------~~l~~~~~L~~L~ls~n~l~~~----------~~--~~~~~L~~L~L~~n~l~~--~~~l 250 (597)
T 3oja_B 195 F-HANVSYN-LL--------STLAIPIAVEELDASHNSINVV----------RG--PVNVELTILKLQHNNLTD--TAWL 250 (597)
T ss_dssp S-EEECCSS-CC--------SEEECCTTCSEEECCSSCCCEE----------EC--SCCSCCCEEECCSSCCCC--CGGG
T ss_pred h-hhhcccC-cc--------ccccCCchhheeeccCCccccc----------cc--ccCCCCCEEECCCCCCCC--Chhh
Confidence 1 2222211 11 1234456899999999887542 11 224689999999999887 5788
Q ss_pred hcccCCcEEEEeccCCCCCCCC-CCCCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceeeecccccccccccccccc
Q 043039 797 LSLNKLRMLCLSFCKKCEIMPP-LGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEWEFIEENI 875 (949)
Q Consensus 797 ~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~ 875 (949)
..+++|+.|+|++|.+....|. ++.+++|+.|+|++|. +..++... ..+|+|+.|++.++. + ...|..+
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~-----~~l~~L~~L~Ls~N~-l---~~i~~~~ 320 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG-----QPIPTLKVLDLSHNH-L---LHVERNQ 320 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSS-----SCCTTCCEEECCSSC-C---CCCGGGH
T ss_pred ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCccc-----ccCCCCcEEECCCCC-C---CccCccc
Confidence 9999999999999998877654 8999999999999876 44443221 358999999998753 2 2344567
Q ss_pred ccccccceeccccCccCcCCCCCCCCCCCcceEEEccCCC
Q 043039 876 TIMPQLNSLAIRDCSKLKMLPDQVLRSTTLKKLEINDCPI 915 (949)
Q Consensus 876 ~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 915 (949)
..+++|+.|+|++| .+..+| +..+++|+.|++++|+.
T Consensus 321 ~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 321 PQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp HHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCE
T ss_pred ccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCCC
Confidence 78999999999999 466666 46788999999999985
No 21
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=248.47 Aligned_cols=134 Identities=21% Similarity=0.172 Sum_probs=78.7
Q ss_pred CCCCCCcCceEEeccccCCCCC-chhhcccCCcEEEEeccCCCCCCCC-CCCCCCcceeeecCCCCc-EEeCCcccCCCC
Q 043039 772 LRPHPNLESLQISFYEVKARFP-NWILSLNKLRMLCLSFCKKCEIMPP-LGKLQSLEVLDIWEMHGI-KRVGDEVLGIEI 848 (949)
Q Consensus 772 l~~~~~L~~L~L~~~~~~~~~p-~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~~l-~~~~~~~~~~~~ 848 (949)
+..+++|+.|++++|.+.+..| ..+..+++|+.|++++|.+....+. ++.+++|++|++.+|.-. ..++ ...
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p-----~~~ 466 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-----DIF 466 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-----SCC
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccch-----hhh
Confidence 4455666666666666555223 3455666666666666665554443 566677777777666411 0111 112
Q ss_pred CCCCccceeeeccccccccccccccccccccccceeccccCccCcCCC-CCCCCCCCcceEEEccCC
Q 043039 849 IAFPRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKMLP-DQVLRSTTLKKLEINDCP 914 (949)
Q Consensus 849 ~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~ 914 (949)
..+++|+.|++.++. .....|..+..+++|+.|++++| .++.+| ..+..+++|+.|++++|+
T Consensus 467 ~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 467 TELRNLTFLDLSQCQ---LEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hcccCCCEEECCCCc---cccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 245666666665542 22233455667788888888887 445444 456677888888888766
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=4.1e-23 Score=245.57 Aligned_cols=235 Identities=17% Similarity=0.192 Sum_probs=101.9
Q ss_pred cccCCCCCeeeCCCcccccCCcCCCCCCCCcccCccceecCCCccCCCccCcccccccccCCCceEEccCCCCCChhhhh
Q 043039 656 IGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAK 735 (949)
Q Consensus 656 i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~ 735 (949)
+..+++|++|++++|.++.+|.+++.+++|++|++..+... ......+..+..|. .+.+.+......+ .
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~----~L~l~~n~~~~~~---~ 342 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFE----NLCQISASNFPSLT----HLSIKGNTKRLEL---G 342 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCS----BGGGGCGGGCTTCS----EEECCSCSSCCBC---C
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcC----cCchhhhhccCcCC----EEECCCCCccccc---c
Confidence 56667777777777777777777777777777764432111 00011222222222 2222222110000 0
Q ss_pred hhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCCC
Q 043039 736 NAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEI 815 (949)
Q Consensus 736 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~ 815 (949)
...+..+++|+.|++++|.+.... ..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+...
T Consensus 343 ~~~~~~l~~L~~L~l~~n~l~~~~-------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 415 (606)
T 3t6q_A 343 TGCLENLENLRELDLSHDDIETSD-------CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415 (606)
T ss_dssp SSTTTTCTTCCEEECCSSCCCEEE-------ESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC
T ss_pred hhhhhccCcCCEEECCCCcccccc-------CcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCc
Confidence 012344555555555555543220 0022344455555555555555443344455555555555555544433
Q ss_pred CCC--CCCCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceeeeccccccccc-cccccccccccccceeccccCccC
Q 043039 816 MPP--LGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEW-EFIEENITIMPQLNSLAIRDCSKL 892 (949)
Q Consensus 816 ~~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~-~~~~~~~~~l~~L~~L~l~~c~~l 892 (949)
.+. ++.+++|++|++++|.- .... ......+++|+.|++.++. +... ...+..+..+++|+.|++++|...
T Consensus 416 ~~~~~~~~l~~L~~L~l~~n~l-~~~~----~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 489 (606)
T 3t6q_A 416 DAQSPFQNLHLLKVLNLSHSLL-DISS----EQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCDLS 489 (606)
T ss_dssp TTCCTTTTCTTCCEEECTTCCC-BTTC----TTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSCCC
T ss_pred ccchhhhCcccCCEEECCCCcc-CCcC----HHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCCccC
Confidence 221 44555555555554431 1000 0001134444444444332 1110 011122334555555555555332
Q ss_pred cCCCCCCCCCCCcceEEEccCC
Q 043039 893 KMLPDQVLRSTTLKKLEINDCP 914 (949)
Q Consensus 893 ~~lp~~~~~l~~L~~L~l~~c~ 914 (949)
...|..+..+++|+.|++++|.
T Consensus 490 ~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 490 SIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp EECTTTTTTCTTCCEEECCSSC
T ss_pred ccChhhhccccCCCEEECCCCc
Confidence 2334444445555555555553
No 23
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.90 E-value=4.3e-23 Score=248.84 Aligned_cols=149 Identities=17% Similarity=0.221 Sum_probs=127.8
Q ss_pred CCceEEEEEeccCCCCcc-cccCCCCceEEEecCCCCCCc-chhhccCCceeEEEeCCccccccccccc-cccCCCCCCe
Q 043039 541 EKLRHSILVLHYNASFPV-SIFNAKKLRSLLIQGYSLQHM-PSFFDQLTCLRALRIGKYGDDAIERIPN-GIEKLIHLRY 617 (949)
Q Consensus 541 ~~~r~l~l~~~~~~~l~~-~~~~~~~Lr~L~l~~~~l~~l-~~~~~~l~~Lr~L~L~~~~~~~~~~lp~-~i~~l~~L~~ 617 (949)
.+++++.+.++....++. .+.++++|++|++++|.+..+ |..|.++++|++|+|++|. +..+|. .++++++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~---l~~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE---LSQLSDKTFAFCTNLTE 101 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC---CCCCCTTTTTTCTTCSE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc---cCccChhhhccCCCCCE
Confidence 789999999988877764 588999999999999998876 6678999999999999998 778876 5999999999
Q ss_pred eeecccCCcccc-hhhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccccCCcC---CCCCCCCcccCccc
Q 043039 618 LKLFFVGIEELP-ETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKG---MGSLTGLRTLSEFV 692 (949)
Q Consensus 618 L~L~~~~i~~lp-~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~---i~~l~~L~~L~~~~ 692 (949)
|++++|.+..+| ..++++++|++|++++|......|..++++++|++|++++|.++.++.. ...+++|+.|++..
T Consensus 102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp EECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred EECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence 999999999886 5799999999999999985555667789999999999999998877643 33568899988655
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=3e-23 Score=245.00 Aligned_cols=353 Identities=16% Similarity=0.186 Sum_probs=221.0
Q ss_pred CCceEEEEEeccCCCCc-ccccCCCCceEEEecCCCCCCcc-hhhccCCceeEEEeCCcccccccccc-ccccCCCCCCe
Q 043039 541 EKLRHSILVLHYNASFP-VSIFNAKKLRSLLIQGYSLQHMP-SFFDQLTCLRALRIGKYGDDAIERIP-NGIEKLIHLRY 617 (949)
Q Consensus 541 ~~~r~l~l~~~~~~~l~-~~~~~~~~Lr~L~l~~~~l~~l~-~~~~~l~~Lr~L~L~~~~~~~~~~lp-~~i~~l~~L~~ 617 (949)
..++++.+.++....++ ..+.++++|++|++++|.+..++ ..|.++++|++|+|++|. +..+| ..++++++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP---IQSLALGAFSGLSSLQK 104 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC---CCEECTTTTTTCTTCCE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc---CCccCHhhhcCcccccc
Confidence 56888888887776553 46778888888888888887764 467888888888888887 66654 56888888888
Q ss_pred eeecccCCcccch-hhcCCCCCcEEeecCCCCCC-ccccccccCCCCCeeeCCCcccccCC-cCCCCCCCC----cccCc
Q 043039 618 LKLFFVGIEELPE-TFCELFNLQNLDLRRCSKFK-RLPQNIGKLVNLRHLIFDEDDLDYMP-KGMGSLTGL----RTLSE 690 (949)
Q Consensus 618 L~L~~~~i~~lp~-~l~~L~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~~~l~~~p-~~i~~l~~L----~~L~~ 690 (949)
|++++|.+..+|. .++.+++|++|++++|.... .+|..++++++|++|++++|.++.++ ..++.+++| ..|++
T Consensus 105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred ccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence 8888888887765 58888888888888887333 46888888888888888888777654 334444444 23322
Q ss_pred cceecC-------------------C------------------------------------------------------
Q 043039 691 FVAVSG-------------------G------------------------------------------------------ 697 (949)
Q Consensus 691 ~~~~~~-------------------~------------------------------------------------------ 697 (949)
..+... +
T Consensus 185 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred CCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence 211000 0
Q ss_pred ----CccCCCccCcccccccccCCCceEEccC-----C------CCCChhhhhh--------------------------
Q 043039 698 ----GKYGSKACNLDGLRHMNHLRGSLKIRGL-----G------NVTDVDAAKN-------------------------- 736 (949)
Q Consensus 698 ----~~~~~~~~~l~~L~~L~~L~~~l~i~~~-----~------~l~~~~~~~~-------------------------- 736 (949)
.........+..+ +.+. .+.+.+. + .+..+....+
T Consensus 265 ~~~~~~~~~~~~~~~~l---~~L~-~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~ 340 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCL---TNVS-SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 340 (570)
T ss_dssp EETTEEESCSTTTTGGG---TTCS-EEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCB
T ss_pred hcchhhhhhchhhhcCc---Cccc-EEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccc
Confidence 0000000111111 2222 2222111 0 0000000000
Q ss_pred hcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCCCC
Q 043039 737 AELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIM 816 (949)
Q Consensus 737 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~ 816 (949)
.....+++|+.|++++|.+.... ..+..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+....
T Consensus 341 ~~~~~~~~L~~L~l~~n~l~~~~-------~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~ 412 (570)
T 2z63_A 341 FSEVDLPSLEFLDLSRNGLSFKG-------CCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMS 412 (570)
T ss_dssp CCCCBCTTCCEEECCSSCCBEEE-------EEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESCT
T ss_pred cccccCCCCCEEeCcCCccCccc-------cccccccccCccCEEECCCCcccc-ccccccccCCCCEEEccCCcccccc
Confidence 00023445555555554443210 012234456777778887777766 5555777888888888888766554
Q ss_pred C--CCCCCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceeeeccccccccccccccccccccccceeccccCccCcC
Q 043039 817 P--PLGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKM 894 (949)
Q Consensus 817 ~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 894 (949)
+ .++.+++|++|++++|. +...... ....+++|+.|.+.++. +.. ...|..+..+++|+.|++++|.....
T Consensus 413 ~~~~~~~l~~L~~L~l~~n~-l~~~~~~----~~~~l~~L~~L~l~~n~-l~~-~~~p~~~~~l~~L~~L~l~~n~l~~~ 485 (570)
T 2z63_A 413 EFSVFLSLRNLIYLDISHTH-TRVAFNG----IFNGLSSLEVLKMAGNS-FQE-NFLPDIFTELRNLTFLDLSQCQLEQL 485 (570)
T ss_dssp TSCTTTTCTTCCEEECTTSC-CEECCTT----TTTTCTTCCEEECTTCE-EGG-GEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred chhhhhcCCCCCEEeCcCCc-ccccchh----hhhcCCcCcEEECcCCc-Ccc-ccchhhhhcccCCCEEECCCCccccC
Confidence 4 47788899999998876 2222211 12257888888887653 111 23446677899999999999955555
Q ss_pred CCCCCCCCCCcceEEEccCCC
Q 043039 895 LPDQVLRSTTLKKLEINDCPI 915 (949)
Q Consensus 895 lp~~~~~l~~L~~L~l~~c~~ 915 (949)
.|..+..+++|+.|++++|..
T Consensus 486 ~~~~~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 486 SPTAFNSLSSLQVLNMASNQL 506 (570)
T ss_dssp CTTTTTTCTTCCEEECCSSCC
T ss_pred ChhhhhcccCCCEEeCCCCcC
Confidence 587888999999999999854
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=1e-22 Score=242.18 Aligned_cols=146 Identities=14% Similarity=0.127 Sum_probs=113.3
Q ss_pred CCceEEEEEeccCCCC-cccccCCCCceEEEecCCCCCCc-chhhccCCceeEEEeCCccccccccc-cccccCCCCCCe
Q 043039 541 EKLRHSILVLHYNASF-PVSIFNAKKLRSLLIQGYSLQHM-PSFFDQLTCLRALRIGKYGDDAIERI-PNGIEKLIHLRY 617 (949)
Q Consensus 541 ~~~r~l~l~~~~~~~l-~~~~~~~~~Lr~L~l~~~~l~~l-~~~~~~l~~Lr~L~L~~~~~~~~~~l-p~~i~~l~~L~~ 617 (949)
..++++.+.++.+..+ |..+.++++|++|++++|.+..+ |..|.++++|++|+|++|. +..+ |..++++++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~ 109 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP---LIFMAETALSGPKALKH 109 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC---CSEECTTTTSSCTTCCE
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc---ccccChhhhcccccccE
Confidence 5788888888877766 55778889999999999888765 6678888999999998887 5554 667888999999
Q ss_pred eeecccCCccc-chhhcCCCCCcEEeecCCCCCCccc-cccccCCCCCeeeCCCcccccCC-cCCCCCCCCc--ccCc
Q 043039 618 LKLFFVGIEEL-PETFCELFNLQNLDLRRCSKFKRLP-QNIGKLVNLRHLIFDEDDLDYMP-KGMGSLTGLR--TLSE 690 (949)
Q Consensus 618 L~L~~~~i~~l-p~~l~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~~p-~~i~~l~~L~--~L~~ 690 (949)
|++++|.++.+ |..++.+++|++|++++|. +..++ +.+..+++|++|++++|.++.++ ..++.+++|+ .|++
T Consensus 110 L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l 186 (606)
T 3t6q_A 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186 (606)
T ss_dssp EECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEEC
T ss_pred eeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEec
Confidence 99999988877 5778888899999999887 54442 34445888888888888888663 4567777777 4543
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=3.9e-22 Score=245.16 Aligned_cols=280 Identities=21% Similarity=0.261 Sum_probs=175.7
Q ss_pred CCceEEEEEeccCCCC-cccccCCCCceEEEecCCC-CCCc-chhhccCCceeEEEeCCccccccccc-cccccCCCCCC
Q 043039 541 EKLRHSILVLHYNASF-PVSIFNAKKLRSLLIQGYS-LQHM-PSFFDQLTCLRALRIGKYGDDAIERI-PNGIEKLIHLR 616 (949)
Q Consensus 541 ~~~r~l~l~~~~~~~l-~~~~~~~~~Lr~L~l~~~~-l~~l-~~~~~~l~~Lr~L~L~~~~~~~~~~l-p~~i~~l~~L~ 616 (949)
..++.+.+.++.+..+ +..+.++++|++|++++|. ...+ |..|.++++|++|+|++|. +..+ |..++++++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~---l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK---IYFLHPDAFQGLFHLF 100 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC---CCEECTTSSCSCSSCC
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc---CcccCHhHccCCcccC
Confidence 7889999998887665 5678889999999999985 3455 6678899999999999988 5555 77899999999
Q ss_pred eeeecccCCcc-cchh--hcCCCCCcEEeecCCCCCCcc-ccccccCCCCCeeeCCCcccccC-CcCCCCC--CCCcccC
Q 043039 617 YLKLFFVGIEE-LPET--FCELFNLQNLDLRRCSKFKRL-PQNIGKLVNLRHLIFDEDDLDYM-PKGMGSL--TGLRTLS 689 (949)
Q Consensus 617 ~L~L~~~~i~~-lp~~--l~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~~-p~~i~~l--~~L~~L~ 689 (949)
+|+|++|.+.. +|.. ++++++|++|+|++|...... +..++++++|++|++++|.+..+ |..++.+ ++|+.|+
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence 99999998875 4554 888999999999998843332 35788999999999888877643 3344444 4555554
Q ss_pred ccceecCCCccCCCccCcc------cccccc---------------------cCCCceEEc-------------------
Q 043039 690 EFVAVSGGGKYGSKACNLD------GLRHMN---------------------HLRGSLKIR------------------- 723 (949)
Q Consensus 690 ~~~~~~~~~~~~~~~~~l~------~L~~L~---------------------~L~~~l~i~------------------- 723 (949)
+..+...... +.....+. .|+.|. .+. .+.+.
T Consensus 181 L~~n~l~~~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~-~L~l~~~~~~~~~~~~~l~~~~~~ 258 (844)
T 3j0a_A 181 LAANSLYSRV-SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF-SLILAHHIMGAGFGFHNIKDPDQN 258 (844)
T ss_dssp ECCSBSCCCC-CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBS-EEECCSSCCBCSSSCSSSTTGGGT
T ss_pred CCCCcccccc-ccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccc-ceecccccccccccccccCCCChh
Confidence 3321110000 00000000 000000 000 00000
Q ss_pred ---c--CCCCCChhhh-------hhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCC
Q 043039 724 ---G--LGNVTDVDAA-------KNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKAR 791 (949)
Q Consensus 724 ---~--~~~l~~~~~~-------~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 791 (949)
+ ...+..+... ....+..+++|+.|+++.|.+... .+..+..+++|+.|+|++|.+.+.
T Consensus 259 ~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~---------~~~~~~~l~~L~~L~Ls~N~l~~~ 329 (844)
T 3j0a_A 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI---------ADEAFYGLDNLQVLNLSYNLLGEL 329 (844)
T ss_dssp TTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE---------CTTTTTTCSSCCEEEEESCCCSCC
T ss_pred hhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC---------ChHHhcCCCCCCEEECCCCCCCcc
Confidence 0 0011111111 112355677777788877776543 344566677777777777777664
Q ss_pred CCchhhcccCCcEEEEeccCCCCCCCC-CCCCCCcceeeecCCC
Q 043039 792 FPNWILSLNKLRMLCLSFCKKCEIMPP-LGKLQSLEVLDIWEMH 834 (949)
Q Consensus 792 ~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~ 834 (949)
.|.++..+++|+.|++++|.+....+. ++.+++|++|+|++|.
T Consensus 330 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred CHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 466667777777777777765544443 6666777777766554
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=6.3e-23 Score=240.86 Aligned_cols=357 Identities=17% Similarity=0.211 Sum_probs=228.9
Q ss_pred CCceEEEEEeccCCCC-cccccCCCCceEEEecCCCCCCcc-hhhccCCceeEEEeCCcccccccccccc-ccCCCCCCe
Q 043039 541 EKLRHSILVLHYNASF-PVSIFNAKKLRSLLIQGYSLQHMP-SFFDQLTCLRALRIGKYGDDAIERIPNG-IEKLIHLRY 617 (949)
Q Consensus 541 ~~~r~l~l~~~~~~~l-~~~~~~~~~Lr~L~l~~~~l~~l~-~~~~~l~~Lr~L~L~~~~~~~~~~lp~~-i~~l~~L~~ 617 (949)
..++.+.+.++.+..+ +..+.++++|++|++++|.+..++ ..|.++++|++|+|++|. +..+|.. ++++++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH---LSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC---CCSCCHHHHTTCTTCCE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc---cCccCHHHhccCCCCcE
Confidence 6788999888877665 457888999999999999888764 578889999999999988 6666654 889999999
Q ss_pred eeecccCCcc--cchhhcCCCCCcEEeecCCCCCCccc-cccccCCCCCeeeCCCccccc-CCcCCCCCCCCcccCccce
Q 043039 618 LKLFFVGIEE--LPETFCELFNLQNLDLRRCSKFKRLP-QNIGKLVNLRHLIFDEDDLDY-MPKGMGSLTGLRTLSEFVA 693 (949)
Q Consensus 618 L~L~~~~i~~--lp~~l~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~-~p~~i~~l~~L~~L~~~~~ 693 (949)
|++++|.+.. .|..++++++|++|++++|..+..+| ..+..+++|++|++++|.++. .|..++.+++|++|++..+
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 9999999884 46778899999999999988677776 478889999999988888875 5666776666665543221
Q ss_pred --------------------ecCCCccCC------CccCccccccc----------------------ccCCCceEEccC
Q 043039 694 --------------------VSGGGKYGS------KACNLDGLRHM----------------------NHLRGSLKIRGL 725 (949)
Q Consensus 694 --------------------~~~~~~~~~------~~~~l~~L~~L----------------------~~L~~~l~i~~~ 725 (949)
+..+..... .......++.| ..+. .+.+.++
T Consensus 183 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~-~l~l~~~ 261 (549)
T 2z81_A 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS-EVEFDDC 261 (549)
T ss_dssp BSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCC-EEEEESC
T ss_pred cccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccc-ccccccc
Confidence 001100000 00000000000 0010 1111100
Q ss_pred -------------------CCCCCh-----------------------------hhh-------hhhcccCCCCCCeEEE
Q 043039 726 -------------------GNVTDV-----------------------------DAA-------KNAELEKKKNLISLEL 750 (949)
Q Consensus 726 -------------------~~l~~~-----------------------------~~~-------~~~~l~~~~~L~~L~l 750 (949)
.++..+ ... ....+..+++|+.|++
T Consensus 262 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~L 341 (549)
T 2z81_A 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDL 341 (549)
T ss_dssp EEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEEC
T ss_pred cccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEc
Confidence 000000 000 0001124667777777
Q ss_pred EecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCC---chhhcccCCcEEEEeccCCCCCCCCCCCCCCcce
Q 043039 751 EFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFP---NWILSLNKLRMLCLSFCKKCEIMPPLGKLQSLEV 827 (949)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p---~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~ 827 (949)
++|.+.+. .......+..+++|+.|++++|.+.+ +| ..+..+++|+.|++++|.+......++.+++|++
T Consensus 342 s~N~l~~~------~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~ 414 (549)
T 2z81_A 342 SENLMVEE------YLKNSACKGAWPSLQTLVLSQNHLRS-MQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRF 414 (549)
T ss_dssp CSSCCCHH------HHHHHTCTTSSTTCCEEECTTSCCCC-HHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCE
T ss_pred cCCccccc------cccchhhhhccccCcEEEccCCcccc-cccchhhhhcCCCCCEEECCCCCCccCChhhcccccccE
Confidence 77665432 00012346677888888888888776 44 3467888899999988877754445778888888
Q ss_pred eeecCCCCcEEeCCccc-------------CCCCCCCCccceeeeccccccccccccccccccccccceeccccCccCcC
Q 043039 828 LDIWEMHGIKRVGDEVL-------------GIEIIAFPRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKM 894 (949)
Q Consensus 828 L~L~~~~~l~~~~~~~~-------------~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 894 (949)
|++++|. ++.++.... ......+++|+.|++.+. .+. ..|. ...+++|+.|+|++| .++.
T Consensus 415 L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~---~ip~-~~~l~~L~~L~Ls~N-~l~~ 487 (549)
T 2z81_A 415 LNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLK---TLPD-ASLFPVLLVMKISRN-QLKS 487 (549)
T ss_dssp EECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCS---SCCC-GGGCTTCCEEECCSS-CCCC
T ss_pred EECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccC---cCCC-cccCccCCEEecCCC-ccCC
Confidence 8888776 322221110 001125677777777664 222 3333 346889999999998 4555
Q ss_pred CC-CCCCCCCCcceEEEccCCC
Q 043039 895 LP-DQVLRSTTLKKLEINDCPI 915 (949)
Q Consensus 895 lp-~~~~~l~~L~~L~l~~c~~ 915 (949)
+| ..+..+++|+.|++++|+-
T Consensus 488 ~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 488 VPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp CCTTGGGGCTTCCEEECCSSCB
T ss_pred cCHHHHhcCcccCEEEecCCCc
Confidence 54 4577889999999999884
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=4.4e-22 Score=225.64 Aligned_cols=299 Identities=18% Similarity=0.152 Sum_probs=166.4
Q ss_pred cccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccchhhcCCCCC
Q 043039 559 SIFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPETFCELFNL 638 (949)
Q Consensus 559 ~~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L 638 (949)
.+.++++|++|++++|.++.+| .+..+++|++|++++|. +..+| ++.+++|++|++++|.++.+| ++.+++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~---l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L 108 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNN---ITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKL 108 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSC---CSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTC
T ss_pred ChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCc---CCeEc--cccCCCCCEEECcCCCCceee--cCCCCcC
Confidence 3445566666666666666655 35666666666666665 44443 566666666666666666654 5666666
Q ss_pred cEEeecCCCCCCccccccccCCCCCeeeCCCcccccCCcCCCCCCCCcccCccceecCCCccCCCccCcccccccccCCC
Q 043039 639 QNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRG 718 (949)
Q Consensus 639 ~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 718 (949)
++|++++|. +..+| ++.+++|++|++++|.++.++ ++.+++|+.|++..+..... . .+..+ +.|.
T Consensus 109 ~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~----~--~~~~l---~~L~- 173 (457)
T 3bz5_A 109 TYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITK----L--DVTPQ---TQLT- 173 (457)
T ss_dssp CEEECCSSC-CSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCC----C--CCTTC---TTCC-
T ss_pred CEEECCCCc-CCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccc----c--ccccC---CcCC-
Confidence 666666665 44454 566666666666666666553 55666666665433211000 0 11122 2222
Q ss_pred ceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhhc
Q 043039 719 SLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWILS 798 (949)
Q Consensus 719 ~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~ 798 (949)
.+.+.+. .++.+ .+..+++|+.|++++|.+... .+..+++|+.|++++|.+.+ +| +..
T Consensus 174 ~L~ls~n-~l~~l------~l~~l~~L~~L~l~~N~l~~~------------~l~~l~~L~~L~Ls~N~l~~-ip--~~~ 231 (457)
T 3bz5_A 174 TLDCSFN-KITEL------DVSQNKLLNRLNCDTNNITKL------------DLNQNIQLTFLDCSSNKLTE-ID--VTP 231 (457)
T ss_dssp EEECCSS-CCCCC------CCTTCTTCCEEECCSSCCSCC------------CCTTCTTCSEEECCSSCCSC-CC--CTT
T ss_pred EEECCCC-cccee------ccccCCCCCEEECcCCcCCee------------ccccCCCCCEEECcCCcccc-cC--ccc
Confidence 2322221 11111 145667777777777766532 25566777777777777776 66 667
Q ss_pred ccCCcEEEEeccCCCCCCCCCCCCCCcc----------eeeecCCCCcEEeCCcccCCCCCCCCccceeeeccccccccc
Q 043039 799 LNKLRMLCLSFCKKCEIMPPLGKLQSLE----------VLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEW 868 (949)
Q Consensus 799 l~~L~~L~L~~~~~~~~~~~l~~l~~L~----------~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~ 868 (949)
+++|+.|++++|.+.... ++.+++|+ .|++++|..+..++ ...+++|+.|++.++..+..+
T Consensus 232 l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-------~~~l~~L~~L~Ls~n~~l~~l 302 (457)
T 3bz5_A 232 LTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-------AEGCRKIKELDVTHNTQLYLL 302 (457)
T ss_dssp CTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-------CTTCTTCCCCCCTTCTTCCEE
T ss_pred cCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc-------ccccccCCEEECCCCccccee
Confidence 777777777777665533 23344443 44444443322221 124567777777665433222
Q ss_pred cccc-----cccccccccceeccccCccCcCCCCCCCCCCCcceEEEccCC
Q 043039 869 EFIE-----ENITIMPQLNSLAIRDCSKLKMLPDQVLRSTTLKKLEINDCP 914 (949)
Q Consensus 869 ~~~~-----~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 914 (949)
.... -.+..+++|+.|++++| .++.+| +..+++|+.|++++|.
T Consensus 303 ~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 303 DCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp ECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSC
T ss_pred ccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCCC
Confidence 1100 01335567777777766 455554 5677788888887765
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=4.4e-22 Score=244.69 Aligned_cols=142 Identities=22% Similarity=0.261 Sum_probs=119.7
Q ss_pred EEEEeccCCCCcccccCCCCceEEEecCCCCCCc-chhhccCCceeEEEeCCccccccccc-cccccCCCCCCeeeeccc
Q 043039 546 SILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHM-PSFFDQLTCLRALRIGKYGDDAIERI-PNGIEKLIHLRYLKLFFV 623 (949)
Q Consensus 546 l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l-~~~~~~l~~Lr~L~L~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~ 623 (949)
+...+.....+|. -.++|++|++++|.++.+ +..|.++++|++|+|++|.. +..+ |..++++++|++|+|++|
T Consensus 9 ~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~--~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 9 AFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT--PLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC--CCEECTTTTSSCTTCCEEECTTC
T ss_pred EEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC--ccccCHHHhcCCCCCCEEECCCC
Confidence 3444455666675 468999999999999876 66799999999999999953 5566 678999999999999999
Q ss_pred CCccc-chhhcCCCCCcEEeecCCCCCCccccc--cccCCCCCeeeCCCcccccCC--cCCCCCCCCcccCccc
Q 043039 624 GIEEL-PETFCELFNLQNLDLRRCSKFKRLPQN--IGKLVNLRHLIFDEDDLDYMP--KGMGSLTGLRTLSEFV 692 (949)
Q Consensus 624 ~i~~l-p~~l~~L~~L~~L~L~~~~~l~~lp~~--i~~L~~L~~L~l~~~~l~~~p--~~i~~l~~L~~L~~~~ 692 (949)
.+..+ |..++++++|++|+|++|.....+|.. ++++++|++|++++|.+..++ ..++++++|++|++..
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC
Confidence 99977 789999999999999999855556665 899999999999999998764 4689999999998554
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=6.2e-22 Score=221.23 Aligned_cols=284 Identities=16% Similarity=0.212 Sum_probs=214.9
Q ss_pred cCCceeEEEeCCcccccccccccc-ccCCCCCCeeeecccCCcccch-hhcCCCCCcEEeecCCCCCCcc-ccccccCCC
Q 043039 585 QLTCLRALRIGKYGDDAIERIPNG-IEKLIHLRYLKLFFVGIEELPE-TFCELFNLQNLDLRRCSKFKRL-PQNIGKLVN 661 (949)
Q Consensus 585 ~l~~Lr~L~L~~~~~~~~~~lp~~-i~~l~~L~~L~L~~~~i~~lp~-~l~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~ 661 (949)
.++++++|+++++. +..+|.. +..+++|++|++++|.+..+|. .+..+++|++|++++|. +..+ |..++.+++
T Consensus 43 ~l~~l~~l~l~~~~---l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 43 TLNNQKIVTFKNST---MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPL 118 (390)
T ss_dssp GGCCCSEEEEESCE---ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred ccCCceEEEecCCc---hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCC
Confidence 46789999999998 8888876 6889999999999999998865 89999999999999998 5555 556899999
Q ss_pred CCeeeCCCcccccCCcC-CCCCCCCcccCccceecCCCccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhccc
Q 043039 662 LRHLIFDEDDLDYMPKG-MGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELE 740 (949)
Q Consensus 662 L~~L~l~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~ 740 (949)
|++|++++|.++.+|.. ++.+++|++|++..+ .........+..++.|. .+.+.+.. +... .+.
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l~~L~----~L~l~~n~-l~~~------~~~ 183 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN----NLERIEDDTFQATTSLQ----NLQLSSNR-LTHV------DLS 183 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS----CCCBCCTTTTSSCTTCC----EEECCSSC-CSBC------CGG
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCC----ccCccChhhccCCCCCC----EEECCCCc-CCcc------ccc
Confidence 99999999999999987 489999999996553 21111122233333333 44443321 1111 255
Q ss_pred CCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCCCCCCCC
Q 043039 741 KKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMPPLG 820 (949)
Q Consensus 741 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~ 820 (949)
.+++|+.|++++|.+.. +..+++|+.|++++|.+.. +|.. .+++|+.|++++|.+.. .+.++
T Consensus 184 ~l~~L~~L~l~~n~l~~--------------~~~~~~L~~L~l~~n~l~~-~~~~--~~~~L~~L~l~~n~l~~-~~~l~ 245 (390)
T 3o6n_A 184 LIPSLFHANVSYNLLST--------------LAIPIAVEELDASHNSINV-VRGP--VNVELTILKLQHNNLTD-TAWLL 245 (390)
T ss_dssp GCTTCSEEECCSSCCSE--------------EECCSSCSEEECCSSCCCE-EECC--CCSSCCEEECCSSCCCC-CGGGG
T ss_pred cccccceeecccccccc--------------cCCCCcceEEECCCCeeee-cccc--ccccccEEECCCCCCcc-cHHHc
Confidence 67899999999886543 3456789999999999877 5543 35899999999998765 46788
Q ss_pred CCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceeeeccccccccccccccccccccccceeccccCccCcCCCCCCC
Q 043039 821 KLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKMLPDQVL 900 (949)
Q Consensus 821 ~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~ 900 (949)
.+++|++|++++|. +........ ..+++|+.|.+.+. .+.. .|.....+|+|+.|++++| .++.+|..+.
T Consensus 246 ~l~~L~~L~Ls~n~-l~~~~~~~~----~~l~~L~~L~L~~n-~l~~---~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 315 (390)
T 3o6n_A 246 NYPGLVEVDLSYNE-LEKIMYHPF----VKMQRLERLYISNN-RLVA---LNLYGQPIPTLKVLDLSHN-HLLHVERNQP 315 (390)
T ss_dssp GCTTCSEEECCSSC-CCEEESGGG----TTCSSCCEEECCSS-CCCE---EECSSSCCTTCCEEECCSS-CCCCCGGGHH
T ss_pred CCCCccEEECCCCc-CCCcChhHc----cccccCCEEECCCC-cCcc---cCcccCCCCCCCEEECCCC-cceecCcccc
Confidence 99999999999986 333322111 25788888888764 2332 3344567999999999999 6778888788
Q ss_pred CCCCcceEEEccCCC
Q 043039 901 RSTTLKKLEINDCPI 915 (949)
Q Consensus 901 ~l~~L~~L~l~~c~~ 915 (949)
.+++|+.|++++|+.
T Consensus 316 ~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 316 QFDRLENLYLDHNSI 330 (390)
T ss_dssp HHTTCSEEECCSSCC
T ss_pred ccCcCCEEECCCCcc
Confidence 899999999999985
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=1.8e-21 Score=228.51 Aligned_cols=351 Identities=15% Similarity=0.112 Sum_probs=231.6
Q ss_pred CCceEEEEEeccCCCCcccccCCCCceEEEecCCCCCCcc-hhhccCCceeEEEeCCccccccccc-cccccCCCCCCee
Q 043039 541 EKLRHSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMP-SFFDQLTCLRALRIGKYGDDAIERI-PNGIEKLIHLRYL 618 (949)
Q Consensus 541 ~~~r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~-~~~~~l~~Lr~L~L~~~~~~~~~~l-p~~i~~l~~L~~L 618 (949)
...+.+.+.++....+|..+. ++|++|++++|.+..++ ..|.++++|++|+|++|. +..+ |..++++++|++|
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR---IRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp --CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC---CCEECTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCC---CCcCCHHHhCCCCCCCEE
Confidence 344788888888888887664 89999999999999876 579999999999999998 7776 6779999999999
Q ss_pred eecccCCcccchhhcCCCCCcEEeecCCCCCCcc--ccccccCCCCCeeeCCCcccccCCcCCCCCCCC--cccCcccee
Q 043039 619 KLFFVGIEELPETFCELFNLQNLDLRRCSKFKRL--PQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGL--RTLSEFVAV 694 (949)
Q Consensus 619 ~L~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~l--p~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L--~~L~~~~~~ 694 (949)
++++|.++.+|.. .+++|++|++++|. +..+ |..++++++|++|++++|.+.. ..+..+++| +.|++..+.
T Consensus 106 ~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 106 DVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp ECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESS
T ss_pred ECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeeccc
Confidence 9999999999987 89999999999998 6554 5789999999999999998875 346666666 888754421
Q ss_pred cCCCccCCCccCccccc-----------------------ccccCCCceEEccC-----------------CCCCCh---
Q 043039 695 SGGGKYGSKACNLDGLR-----------------------HMNHLRGSLKIRGL-----------------GNVTDV--- 731 (949)
Q Consensus 695 ~~~~~~~~~~~~l~~L~-----------------------~L~~L~~~l~i~~~-----------------~~l~~~--- 731 (949)
... .......+..+. .+..|. .+.+... ..+..+
T Consensus 181 l~~--~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~ 257 (562)
T 3a79_B 181 YHI--KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ-LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257 (562)
T ss_dssp CCC--CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEE-EEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred ccc--cccCcccccccCcceEEEEecCccchhhhhhhcccccceEE-EecccccccccchHHHHHHHHhccCcceEEEec
Confidence 100 111122222221 111111 1111110 000000
Q ss_pred -------hhhhhhcccCCCCCCeEEEEecCCCCcchhh--------------------------hcHHHHhh--------
Q 043039 732 -------DAAKNAELEKKKNLISLELEFDKEEEEDEDE--------------------------VNHQAIIE-------- 770 (949)
Q Consensus 732 -------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--------------------------~~~~~~~~-------- 770 (949)
...........++|+.|+++.|.+.+..... ........
T Consensus 258 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~ 337 (562)
T 3a79_B 258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLS 337 (562)
T ss_dssp EEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEE
T ss_pred CCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEE
Confidence 0000000111235666666665443210000 00000000
Q ss_pred ----------cCCCCCCcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCCCC--C-CCCCCCCcceeeecCCCCcE
Q 043039 771 ----------ALRPHPNLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIM--P-PLGKLQSLEVLDIWEMHGIK 837 (949)
Q Consensus 771 ----------~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~--~-~l~~l~~L~~L~L~~~~~l~ 837 (949)
....+++|+.|++++|.+.+..|.++..+++|+.|+|++|.+.... | .++.+++|++|++++|.-..
T Consensus 338 l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 338 ISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417 (562)
T ss_dssp EESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred ccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC
Confidence 0156678888888888888777888888888888888888766532 2 37788888999888876211
Q ss_pred EeCCcccCCCCCCCCccceeeeccccccccccccccccccc-cccceeccccCccCcCCCCCCCCCCCcceEEEccCCC
Q 043039 838 RVGDEVLGIEIIAFPRLKKFTLWSLDGWEEWEFIEENITIM-PQLNSLAIRDCSKLKMLPDQVLRSTTLKKLEINDCPI 915 (949)
Q Consensus 838 ~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 915 (949)
.++.. ....+++|+.|.+.++. +. ...|. .+ ++|+.|++++| .++.+|..+..+++|+.|++++|..
T Consensus 418 ~~~~~----~~~~l~~L~~L~l~~n~-l~--~~~~~---~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l 485 (562)
T 3a79_B 418 HAYDR----TCAWAESILVLNLSSNM-LT--GSVFR---CLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQL 485 (562)
T ss_dssp CCSSC----CCCCCTTCCEEECCSSC-CC--GGGGS---SCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSCC
T ss_pred ccChh----hhcCcccCCEEECCCCC-CC--cchhh---hhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCCC
Confidence 12221 12256778888776642 21 22223 34 69999999999 7889999888999999999999974
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=6.7e-22 Score=230.32 Aligned_cols=349 Identities=16% Similarity=0.110 Sum_probs=217.4
Q ss_pred eEEEEEeccCCCCcccccCCCCceEEEecCCCCCCcc-hhhccCCceeEEEeCCccccccccc-cccccCCCCCCeeeec
Q 043039 544 RHSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMP-SFFDQLTCLRALRIGKYGDDAIERI-PNGIEKLIHLRYLKLF 621 (949)
Q Consensus 544 r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~-~~~~~l~~Lr~L~L~~~~~~~~~~l-p~~i~~l~~L~~L~L~ 621 (949)
+.+.+.++....+|..+. ++|++|++++|.+..++ ..|.++++|++|+|++|. +..+ |..++++++|++|+|+
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNR---IQYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC---CCEEEGGGGTTCTTCCEEECC
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCc---cCCcChHHhhcccCCCEEecC
Confidence 456777777778887665 89999999999999875 579999999999999998 6666 7789999999999999
Q ss_pred ccCCcccchhhcCCCCCcEEeecCCCCCC-ccccccccCCCCCeeeCCCcccccCCcCCCCCCCC--cccCccceecCCC
Q 043039 622 FVGIEELPETFCELFNLQNLDLRRCSKFK-RLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGL--RTLSEFVAVSGGG 698 (949)
Q Consensus 622 ~~~i~~lp~~l~~L~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L--~~L~~~~~~~~~~ 698 (949)
+|.++.+|.. .+++|++|++++|.... .+|..++++++|++|++++|.+.. ..++.+++| +.|++..+....
T Consensus 78 ~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~- 152 (520)
T 2z7x_B 78 HNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYG- 152 (520)
T ss_dssp SSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTT-
T ss_pred CCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccc-
Confidence 9999999987 89999999999998443 478899999999999999998876 357778888 888855421100
Q ss_pred ccCCCccCccccc-----------------------ccccCCCceEEccCCC---CCChhhhhhhcccCC----------
Q 043039 699 KYGSKACNLDGLR-----------------------HMNHLRGSLKIRGLGN---VTDVDAAKNAELEKK---------- 742 (949)
Q Consensus 699 ~~~~~~~~l~~L~-----------------------~L~~L~~~l~i~~~~~---l~~~~~~~~~~l~~~---------- 742 (949)
.......+..+. .++.|. .+.+..... ...+. .....+..+
T Consensus 153 -~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~ 229 (520)
T 2z7x_B 153 -EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE-LSNIKCVLEDNKCSYFL-SILAKLQTNPKLSNLTLNN 229 (520)
T ss_dssp -SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEE-ECCEEECCSTTTTHHHH-HHHHGGGGCTTCCEEEEEE
T ss_pred -cccccccccccccceEEEEeccCcchhhhhhhhhhccccee-eccccccccccccceee-cchhhhccccchhhccccc
Confidence 111122222221 011111 111111000 00000 000112222
Q ss_pred -----------------CCCCeEEEEecCCCCcchhh--------------------------hcHHHHhh---------
Q 043039 743 -----------------KNLISLELEFDKEEEEDEDE--------------------------VNHQAIIE--------- 770 (949)
Q Consensus 743 -----------------~~L~~L~l~~~~~~~~~~~~--------------------------~~~~~~~~--------- 770 (949)
++|+.|++++|.+.+..... ........
T Consensus 230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l 309 (520)
T 2z7x_B 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTV 309 (520)
T ss_dssp EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEE
T ss_pred cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEc
Confidence 24444444444332110000 00000000
Q ss_pred ---------cCCCCCCcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCC--CCC-CCCCCCCcceeeecCCCCcEE
Q 043039 771 ---------ALRPHPNLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCE--IMP-PLGKLQSLEVLDIWEMHGIKR 838 (949)
Q Consensus 771 ---------~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~--~~~-~l~~l~~L~~L~L~~~~~l~~ 838 (949)
.+..+++|+.|++++|.+.+.+|.++..+++|+.|+|++|.+.. .+| .++.+++|++|++++|.-...
T Consensus 310 ~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 389 (520)
T 2z7x_B 310 SGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD 389 (520)
T ss_dssp ESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC
T ss_pred CCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc
Confidence 01345666666666666666566666666677777777666554 222 256667777777766551111
Q ss_pred eCCcccCCCCCCCCccceeeeccccccccccccccccccccccceeccccCccCcCCCCCCCCCCCcceEEEccCCC
Q 043039 839 VGDEVLGIEIIAFPRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKMLPDQVLRSTTLKKLEINDCPI 915 (949)
Q Consensus 839 ~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 915 (949)
++.. ....+++|+.|.+.++. +. ...|..+ .++|+.|++++| .++.+|..+..+++|+.|++++|..
T Consensus 390 l~~~----~~~~l~~L~~L~Ls~N~-l~--~~~~~~l--~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~l 456 (520)
T 2z7x_B 390 EKKG----DCSWTKSLLSLNMSSNI-LT--DTIFRCL--PPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQL 456 (520)
T ss_dssp GGGC----SCCCCTTCCEEECCSSC-CC--GGGGGSC--CTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred cccc----hhccCccCCEEECcCCC-CC--cchhhhh--cccCCEEECCCC-cccccchhhhcCCCCCEEECCCCcC
Confidence 2211 11245677777776542 11 2222222 168999999998 6779998888999999999999964
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=7.8e-22 Score=216.88 Aligned_cols=285 Identities=19% Similarity=0.251 Sum_probs=225.0
Q ss_pred cccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccchhhcCCCCC
Q 043039 559 SIFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPETFCELFNL 638 (949)
Q Consensus 559 ~~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L 638 (949)
.+..+++|++|+++++.+..++. +..+++|++|++++|. +..+|. +..+++|++|++++|.+..+| .+..+++|
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~---i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L 112 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQ---ITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNL 112 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSC---CCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTC
T ss_pred cchhcccccEEEEeCCccccchh-hhhcCCccEEEccCCc---cccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcC
Confidence 34567899999999999988876 8889999999999998 777776 899999999999999998876 58999999
Q ss_pred cEEeecCCCCCCccccccccCCCCCeeeCCCcccccCCcCCCCCCCCcccCccceecCCCccCCCccCcccccccccCCC
Q 043039 639 QNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRG 718 (949)
Q Consensus 639 ~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 718 (949)
++|++++|. +..+|. +..+++|++|++++|.....+..+..+++|+.|++.. +. +.
T Consensus 113 ~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~----~~-----------------~~- 168 (347)
T 4fmz_A 113 RELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTE----SK-----------------VK- 168 (347)
T ss_dssp SEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCS----SC-----------------CC-
T ss_pred CEEECcCCc-ccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecC----CC-----------------cC-
Confidence 999999988 777776 8899999999988885544445588888888887443 11 00
Q ss_pred ceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhhc
Q 043039 719 SLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWILS 798 (949)
Q Consensus 719 ~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~ 798 (949)
.. ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.. ++. +..
T Consensus 169 -----------~~-----~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~l~~L~~L~l~~n~l~~-~~~-~~~ 219 (347)
T 4fmz_A 169 -----------DV-----TPIANLTDLYSLSLNYNQIEDI-----------SPLASLTSLHYFTAYVNQITD-ITP-VAN 219 (347)
T ss_dssp -----------CC-----GGGGGCTTCSEEECTTSCCCCC-----------GGGGGCTTCCEEECCSSCCCC-CGG-GGG
T ss_pred -----------Cc-----hhhccCCCCCEEEccCCccccc-----------ccccCCCccceeecccCCCCC-Cch-hhc
Confidence 00 0145678899999999887643 126678999999999999887 544 788
Q ss_pred ccCCcEEEEeccCCCCCCCCCCCCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceeeeccccccccccccccccccc
Q 043039 799 LNKLRMLCLSFCKKCEIMPPLGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEWEFIEENITIM 878 (949)
Q Consensus 799 l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l 878 (949)
+++|+.|++++|.+....+ +..+++|++|++++|. +..++ ....+++|+.|.+.++ .+..+ ..+..+
T Consensus 220 ~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~------~~~~l~~L~~L~l~~n-~l~~~----~~~~~l 286 (347)
T 4fmz_A 220 MTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQ-ISDIN------AVKDLTKLKMLNVGSN-QISDI----SVLNNL 286 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG------GGTTCTTCCEEECCSS-CCCCC----GGGGGC
T ss_pred CCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCc-cCCCh------hHhcCCCcCEEEccCC-ccCCC----hhhcCC
Confidence 9999999999998766544 8899999999999886 33221 1236889999999875 33333 235689
Q ss_pred cccceeccccCccCcCCCCCCCCCCCcceEEEccCCC
Q 043039 879 PQLNSLAIRDCSKLKMLPDQVLRSTTLKKLEINDCPI 915 (949)
Q Consensus 879 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 915 (949)
++|+.|++++|+.....|..+..+++|+.|++++|+.
T Consensus 287 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc
Confidence 9999999999965555566677899999999999985
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=2.1e-21 Score=222.13 Aligned_cols=319 Identities=18% Similarity=0.257 Sum_probs=242.1
Q ss_pred eccCCCCCCCcccccccCCceEEEEEeccCCCCcccccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccc
Q 043039 524 MEVGSVGEPPLLRNICYEKLRHSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIE 603 (949)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~ 603 (949)
+........+. .....+++.+.+.++....++. +..+++|++|++++|.+..++. +..+++|++|++++|. +.
T Consensus 75 Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~---l~ 147 (466)
T 1o6v_A 75 FSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT---IS 147 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEE---EC
T ss_pred CCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCc---cC
Confidence 34444444442 4456789999999988887666 8899999999999999998876 8999999999999998 77
Q ss_pred cccccccCCCCCCeeeecccCCcccchhhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccccCCcCCCCCC
Q 043039 604 RIPNGIEKLIHLRYLKLFFVGIEELPETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLT 683 (949)
Q Consensus 604 ~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~ 683 (949)
.++. ++.+++|++|+++ +.+..++. +..+++|++|++++|. +..++ .+..+++|++|++++|.+..++. ++.++
T Consensus 148 ~~~~-~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~ 221 (466)
T 1o6v_A 148 DISA-LSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNK-VSDIS-VLAKLTNLESLIATNNQISDITP-LGILT 221 (466)
T ss_dssp CCGG-GTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCGG-GGGCT
T ss_pred CChh-hccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCc-CCCCh-hhccCCCCCEEEecCCccccccc-ccccC
Confidence 7764 8999999999996 45555554 8999999999999998 66665 58999999999999999988765 78899
Q ss_pred CCcccCccceecCCCccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhh
Q 043039 684 GLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEV 763 (949)
Q Consensus 684 ~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 763 (949)
+|+.|++..+ . ...+..+..+..|+ .+.+.+.. +... ..+..+++|+.|++++|.+...
T Consensus 222 ~L~~L~l~~n----~-----l~~~~~l~~l~~L~-~L~l~~n~-l~~~-----~~~~~l~~L~~L~l~~n~l~~~----- 280 (466)
T 1o6v_A 222 NLDELSLNGN----Q-----LKDIGTLASLTNLT-DLDLANNQ-ISNL-----APLSGLTKLTELKLGANQISNI----- 280 (466)
T ss_dssp TCCEEECCSS----C-----CCCCGGGGGCTTCS-EEECCSSC-CCCC-----GGGTTCTTCSEEECCSSCCCCC-----
T ss_pred CCCEEECCCC----C-----cccchhhhcCCCCC-EEECCCCc-cccc-----hhhhcCCCCCEEECCCCccCcc-----
Confidence 9999986542 2 11123344444444 55555432 2221 1277889999999999987753
Q ss_pred cHHHHhhcCCCCCCcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCCCCCCCCCCCCcceeeecCCCCcEEeCCcc
Q 043039 764 NHQAIIEALRPHPNLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMPPLGKLQSLEVLDIWEMHGIKRVGDEV 843 (949)
Q Consensus 764 ~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~ 843 (949)
+ .+..+++|+.|++++|.+.+ ++. +..+++|+.|+|++|.+.+..+ ++.+++|+.|++++|. +....
T Consensus 281 -----~-~~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~--- 347 (466)
T 1o6v_A 281 -----S-PLAGLTALTNLELNENQLED-ISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNK-VSDVS--- 347 (466)
T ss_dssp -----G-GGTTCTTCSEEECCSSCCSC-CGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSC-CCCCG---
T ss_pred -----c-cccCCCccCeEEcCCCcccC-chh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCc-cCCch---
Confidence 1 26778999999999999887 555 7899999999999998776555 7899999999999886 33221
Q ss_pred cCCCCCCCCccceeeeccccccccccccccccccccccceeccccCccCcCCCCC
Q 043039 844 LGIEIIAFPRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKMLPDQ 898 (949)
Q Consensus 844 ~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~ 898 (949)
....+++|+.|++.++. +.. ..| +..+++|+.|++++|+ ++.+|..
T Consensus 348 ---~l~~l~~L~~L~l~~n~-l~~--~~~--~~~l~~L~~L~l~~n~-~~~~p~~ 393 (466)
T 1o6v_A 348 ---SLANLTNINWLSAGHNQ-ISD--LTP--LANLTRITQLGLNDQA-WTNAPVN 393 (466)
T ss_dssp ---GGTTCTTCCEEECCSSC-CCB--CGG--GTTCTTCCEEECCCEE-EECCCBC
T ss_pred ---hhccCCCCCEEeCCCCc-cCc--cch--hhcCCCCCEEeccCCc-ccCCchh
Confidence 12267888888887653 222 233 6689999999999994 4445543
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=6.9e-22 Score=227.38 Aligned_cols=293 Identities=19% Similarity=0.190 Sum_probs=197.4
Q ss_pred CCceEEEEEeccCCCC-cccccCCCCceEEEecCCCCCCc-chhhccCCceeEEEeCCcccccccccccc-ccCCCCCCe
Q 043039 541 EKLRHSILVLHYNASF-PVSIFNAKKLRSLLIQGYSLQHM-PSFFDQLTCLRALRIGKYGDDAIERIPNG-IEKLIHLRY 617 (949)
Q Consensus 541 ~~~r~l~l~~~~~~~l-~~~~~~~~~Lr~L~l~~~~l~~l-~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~-i~~l~~L~~ 617 (949)
..++.+.+.++.+..+ +..+.++++|++|++++|.+..+ |..|.++++|++|+|++|. +..+|.. +.++++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~ 108 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR---LKLIPLGVFTGLSNLTK 108 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC---CCSCCTTSSTTCTTCCE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc---CCccCcccccCCCCCCE
Confidence 6889999999888776 45788999999999999999876 6789999999999999998 7788764 789999999
Q ss_pred eeecccCCccc-chhhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccccCCc-CCCCCCCCcccCccceec
Q 043039 618 LKLFFVGIEEL-PETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPK-GMGSLTGLRTLSEFVAVS 695 (949)
Q Consensus 618 L~L~~~~i~~l-p~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~-~i~~l~~L~~L~~~~~~~ 695 (949)
|+|++|.+..+ |..+..+++|++|++++|......|..+..+++|++|++++|.++.+|. .+..+++|+.|++..+
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-- 186 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL-- 186 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC--
T ss_pred EECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC--
Confidence 99999999876 5678999999999999998444456689999999999999999998875 4788999999985431
Q ss_pred CCCccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCC
Q 043039 696 GGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPH 775 (949)
Q Consensus 696 ~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~ 775 (949)
....... ..+..+++|+.|+++.|..... ++......
T Consensus 187 --~i~~~~~--------------------------------~~~~~l~~L~~L~l~~~~~~~~---------~~~~~~~~ 223 (477)
T 2id5_A 187 --NINAIRD--------------------------------YSFKRLYRLKVLEISHWPYLDT---------MTPNCLYG 223 (477)
T ss_dssp --CCCEECT--------------------------------TCSCSCTTCCEEEEECCTTCCE---------ECTTTTTT
T ss_pred --cCcEeCh--------------------------------hhcccCcccceeeCCCCccccc---------cCcccccC
Confidence 1000000 1233455666666665544332 22222233
Q ss_pred CCcCceEEeccccCCCCC-chhhcccCCcEEEEeccCCCCCCCC-CCCCCCcceeeecCCCCcEEeCCcccCCCCCCCCc
Q 043039 776 PNLESLQISFYEVKARFP-NWILSLNKLRMLCLSFCKKCEIMPP-LGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPR 853 (949)
Q Consensus 776 ~~L~~L~L~~~~~~~~~p-~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~ 853 (949)
.+|+.|+|++|.+.. +| ..+..+++|+.|+|++|.+....+. +..+++|+.|+|.++. +..+.... ...+++
T Consensus 224 ~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~----~~~l~~ 297 (477)
T 2id5_A 224 LNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYA----FRGLNY 297 (477)
T ss_dssp CCCSEEEEESSCCCS-CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-CSEECTTT----BTTCTT
T ss_pred ccccEEECcCCcccc-cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc-cceECHHH----hcCccc
Confidence 466666666666655 44 3445666666666666665544333 5566666666666554 22221111 113455
Q ss_pred cceeeeccccccccccccccccccccccceeccccCc
Q 043039 854 LKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCS 890 (949)
Q Consensus 854 L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 890 (949)
|+.|++.+. .+. ...+..+..+++|+.|+|++|+
T Consensus 298 L~~L~L~~N-~l~--~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 298 LRVLNVSGN-QLT--TLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CCEEECCSS-CCS--CCCGGGBSCGGGCCEEECCSSC
T ss_pred CCEEECCCC-cCc--eeCHhHcCCCcccCEEEccCCC
Confidence 555555442 111 1222234456666666666664
No 36
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=8.7e-22 Score=225.31 Aligned_cols=335 Identities=18% Similarity=0.148 Sum_probs=238.2
Q ss_pred ccccCCceEEEEEeccCC-CC-cccccCCCCceEEEecCCCCCCc-chhhccCCceeEEEeCCcccccccc-cccc--cc
Q 043039 537 NICYEKLRHSILVLHYNA-SF-PVSIFNAKKLRSLLIQGYSLQHM-PSFFDQLTCLRALRIGKYGDDAIER-IPNG--IE 610 (949)
Q Consensus 537 ~~~~~~~r~l~l~~~~~~-~l-~~~~~~~~~Lr~L~l~~~~l~~l-~~~~~~l~~Lr~L~L~~~~~~~~~~-lp~~--i~ 610 (949)
.....+++.+.+..+... .+ +..+.++++|++|++++|.+..+ |..|.++++|++|+|++|. +.. +|.. ++
T Consensus 50 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~~ 126 (455)
T 3v47_A 50 FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCN---LDGAVLSGNFFK 126 (455)
T ss_dssp TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSC---CBTHHHHSSTTT
T ss_pred hccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCC---CCccccCccccc
Confidence 345578999999888764 33 45688999999999999999876 7789999999999999998 553 4444 89
Q ss_pred CCCCCCeeeecccCCccc-chh-hcCCCCCcEEeecCCCCCCccccccccC--CCCCeeeCCCcccccCCcC--------
Q 043039 611 KLIHLRYLKLFFVGIEEL-PET-FCELFNLQNLDLRRCSKFKRLPQNIGKL--VNLRHLIFDEDDLDYMPKG-------- 678 (949)
Q Consensus 611 ~l~~L~~L~L~~~~i~~l-p~~-l~~L~~L~~L~L~~~~~l~~lp~~i~~L--~~L~~L~l~~~~l~~~p~~-------- 678 (949)
++++|++|++++|.+..+ |.. +..+++|++|++++|......|..+..+ .+|+.|+++.+.+..++..
T Consensus 127 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 206 (455)
T 3v47_A 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206 (455)
T ss_dssp TCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHC
T ss_pred CcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccc
Confidence 999999999999999987 554 8899999999999998655667777776 7899999999998877633
Q ss_pred -CCCCCCCcccCccceecCCCccCCCccCcccccccccCCCceEEccCCCCCC------hhhhhhhcc--cCCCCCCeEE
Q 043039 679 -MGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTD------VDAAKNAEL--EKKKNLISLE 749 (949)
Q Consensus 679 -i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~------~~~~~~~~l--~~~~~L~~L~ 749 (949)
+..+++|++|++..+ .........+..+.....+. .+.+.+...... +.......+ ...++|+.|+
T Consensus 207 ~~~~~~~L~~L~Ls~n----~l~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 281 (455)
T 3v47_A 207 NPFKNTSITTLDLSGN----GFKESMAKRFFDAIAGTKIQ-SLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCD 281 (455)
T ss_dssp CTTTTCEEEEEECTTS----CCCHHHHHHHHHHTTTCCEE-EEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEE
T ss_pred cccccceeeeEecCCC----cccccchhhhhcccccccee-eEeeccccccccccchhhhccCcccccccccccCceEEE
Confidence 346678999986542 11100111111111111111 222222111000 000000011 1347899999
Q ss_pred EEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCCCCCC-CCCCCCccee
Q 043039 750 LEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMPP-LGKLQSLEVL 828 (949)
Q Consensus 750 l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L 828 (949)
++.|.+... .+..+..+++|+.|+|++|.+.+..|..+..+++|+.|+|++|.+....+. ++.+++|++|
T Consensus 282 l~~n~l~~~---------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 352 (455)
T 3v47_A 282 LSKSKIFAL---------LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVL 352 (455)
T ss_dssp CCSSCCCEE---------CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEE
T ss_pred ecCcccccc---------chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEE
Confidence 999988754 566788899999999999999986688899999999999999988766554 7899999999
Q ss_pred eecCCCCcEEeCCcccCCCCCCCCccceeeeccccccccccccccccccccccceeccccCccCcCCC
Q 043039 829 DIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKMLP 896 (949)
Q Consensus 829 ~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 896 (949)
+|++|. +..+.... ...+++|+.|++.+. .++ ...+..+..+++|+.|+|++|+.....|
T Consensus 353 ~Ls~N~-l~~~~~~~----~~~l~~L~~L~L~~N-~l~--~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 353 DLSYNH-IRALGDQS----FLGLPNLKELALDTN-QLK--SVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ECCSSC-CCEECTTT----TTTCTTCCEEECCSS-CCS--CCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ECCCCc-ccccChhh----ccccccccEEECCCC-ccc--cCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999986 44332221 125788888888763 233 2233345789999999999997655444
No 37
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=5.1e-21 Score=230.69 Aligned_cols=131 Identities=11% Similarity=0.126 Sum_probs=68.9
Q ss_pred CcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCCCCC--CCCCCCCcceeeecCCCCcEEeCCcccCCCCCCCCcc
Q 043039 777 NLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMP--PLGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRL 854 (949)
Q Consensus 777 ~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L 854 (949)
+|+.|++++|.+.+..|..+..+++|+.|+|++|.+...++ .++.+++|++|++++|. +..+..... ..+|+|
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~----~~~~~L 456 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSF----ALVPSL 456 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTT----TTCTTC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChhhh----hcCccc
Confidence 45555555555555445556666677777777766654443 25666677777776665 222221111 134555
Q ss_pred ceeeeccccccccccccccccccccccceeccccCccCcCCCC-CCCCCCCcceEEEccCC
Q 043039 855 KKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKMLPD-QVLRSTTLKKLEINDCP 914 (949)
Q Consensus 855 ~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~ 914 (949)
+.|.+.++. +......|..+..+++|+.|++++| .++.+|. .+..+++|+.|++++|.
T Consensus 457 ~~L~l~~n~-l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~ 515 (680)
T 1ziw_A 457 QRLMLRRVA-LKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNN 515 (680)
T ss_dssp CEEECTTSC-CBCTTCSSCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccchhcccc-ccccccCCcccccCCCCCEEECCCC-CCCcCChhhhccccccCEEeCCCCC
Confidence 555554432 1222233444555666666666665 3444433 34555666666666654
No 38
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=3e-22 Score=217.12 Aligned_cols=220 Identities=20% Similarity=0.292 Sum_probs=155.2
Q ss_pred CCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccchhhcCCCCCcEEe
Q 043039 563 AKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPETFCELFNLQNLD 642 (949)
Q Consensus 563 ~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L~~L~ 642 (949)
..+++.|++++|.+..+|..+..+++|++|+|++|. +..+|..++++++|++|+|++|.+..+|..++.+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~---l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG---LMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC---CCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC---ccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence 467788888888888777777778888888888877 66778778888888888888888888888888888888888
Q ss_pred ecCCCCCCcccccccc---------CCCCCeeeCCCcccccCCcCCCCCCCCcccCccceecCCCccCCCccCccccccc
Q 043039 643 LRRCSKFKRLPQNIGK---------LVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHM 713 (949)
Q Consensus 643 L~~~~~l~~lp~~i~~---------L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L 713 (949)
+++|..+..+|..++. +++|++|++++|.++.+|..++.+++|++|++.. +.
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~----N~--------------- 217 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRN----SP--------------- 217 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEES----SC---------------
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccC----CC---------------
Confidence 8887777777776654 7778888877777777777777777777776332 11
Q ss_pred ccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCC
Q 043039 714 NHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFP 793 (949)
Q Consensus 714 ~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p 793 (949)
+. .+. ..+..+++|+.|++++|...+. ++..+..+++|+.|+|++|...+.+|
T Consensus 218 --l~---------~l~-------~~l~~l~~L~~L~Ls~n~~~~~---------~p~~~~~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 218 --LS---------ALG-------PAIHHLPKLEELDLRGCTALRN---------YPPIFGGRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp --CC---------CCC-------GGGGGCTTCCEEECTTCTTCCB---------CCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred --CC---------cCc-------hhhccCCCCCEEECcCCcchhh---------hHHHhcCCCCCCEEECCCCCchhhcc
Confidence 00 000 0133455666666666555443 44556667777777777777666677
Q ss_pred chhhcccCCcEEEEeccCCCCCCCC-CCCCCCcceeeec
Q 043039 794 NWILSLNKLRMLCLSFCKKCEIMPP-LGKLQSLEVLDIW 831 (949)
Q Consensus 794 ~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~ 831 (949)
.++..+++|+.|+|++|...+.+|. ++.+++|+.+.+.
T Consensus 271 ~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 7777777777777777776666665 6777777777663
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=1.5e-21 Score=230.49 Aligned_cols=284 Identities=17% Similarity=0.202 Sum_probs=214.7
Q ss_pred cCCceeEEEeCCcccccccccccc-ccCCCCCCeeeecccCCcccch-hhcCCCCCcEEeecCCCCCCccc-cccccCCC
Q 043039 585 QLTCLRALRIGKYGDDAIERIPNG-IEKLIHLRYLKLFFVGIEELPE-TFCELFNLQNLDLRRCSKFKRLP-QNIGKLVN 661 (949)
Q Consensus 585 ~l~~Lr~L~L~~~~~~~~~~lp~~-i~~l~~L~~L~L~~~~i~~lp~-~l~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~ 661 (949)
.+.+++.|+++++. +..+|.. +..+++|++|+|++|.+..+|+ .++.+++|++|+|++|. +..+| ..++.+++
T Consensus 49 ~l~~l~~l~l~~~~---l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 49 TLNNQKIVTFKNST---MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPL 124 (597)
T ss_dssp GGCCCSEEEESSCE---ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred cCCCceEEEeeCCC---CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCC
Confidence 46789999999998 8888875 6789999999999999998865 89999999999999998 55555 55799999
Q ss_pred CCeeeCCCcccccCCcC-CCCCCCCcccCccceecCCCccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhccc
Q 043039 662 LRHLIFDEDDLDYMPKG-MGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELE 740 (949)
Q Consensus 662 L~~L~l~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~ 740 (949)
|++|++++|.++.+|.. ++.+++|++|++..| .........+..+..|. .+.+.+.. +... .+.
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N----~l~~~~~~~~~~l~~L~----~L~L~~N~-l~~~------~~~ 189 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN----NLERIEDDTFQATTSLQ----NLQLSSNR-LTHV------DLS 189 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS----CCCBCCTTTTTTCTTCC----EEECTTSC-CSBC------CGG
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC----cCCCCChhhhhcCCcCc----EEECcCCC-CCCc------Chh
Confidence 99999999999999987 589999999996653 21111122233333333 44443321 1211 255
Q ss_pred CCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCCCCCCCC
Q 043039 741 KKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMPPLG 820 (949)
Q Consensus 741 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~ 820 (949)
.+++|+.|++++|.+.. +..+++|+.|++++|.+.. +|..+ .++|+.|+|++|.+.+ ++.++
T Consensus 190 ~l~~L~~L~l~~n~l~~--------------l~~~~~L~~L~ls~n~l~~-~~~~~--~~~L~~L~L~~n~l~~-~~~l~ 251 (597)
T 3oja_B 190 LIPSLFHANVSYNLLST--------------LAIPIAVEELDASHNSINV-VRGPV--NVELTILKLQHNNLTD-TAWLL 251 (597)
T ss_dssp GCTTCSEEECCSSCCSE--------------EECCTTCSEEECCSSCCCE-EECSC--CSCCCEEECCSSCCCC-CGGGG
T ss_pred hhhhhhhhhcccCcccc--------------ccCCchhheeeccCCcccc-ccccc--CCCCCEEECCCCCCCC-Chhhc
Confidence 67899999999886543 3456789999999999876 55443 4789999999998765 46689
Q ss_pred CCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceeeeccccccccccccccccccccccceeccccCccCcCCCCCCC
Q 043039 821 KLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKMLPDQVL 900 (949)
Q Consensus 821 ~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~ 900 (949)
.+++|+.|+|++|.--...+..+ ..+++|+.|.+.++ .+.. .|..+..+|+|+.|+|++| .+..+|..+.
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~Ls~N-~l~~---l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~ 321 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPF-----VKMQRLERLYISNN-RLVA---LNLYGQPIPTLKVLDLSHN-HLLHVERNQP 321 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGG-----TTCSSCCEEECTTS-CCCE---EECSSSCCTTCCEEECCSS-CCCCCGGGHH
T ss_pred cCCCCCEEECCCCccCCCCHHHh-----cCccCCCEEECCCC-CCCC---CCcccccCCCCcEEECCCC-CCCccCcccc
Confidence 99999999999987322222222 25788888888764 2322 3455567999999999999 6678998888
Q ss_pred CCCCcceEEEccCCC
Q 043039 901 RSTTLKKLEINDCPI 915 (949)
Q Consensus 901 ~l~~L~~L~l~~c~~ 915 (949)
.+++|+.|++++|+.
T Consensus 322 ~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 322 QFDRLENLYLDHNSI 336 (597)
T ss_dssp HHTTCSEEECCSSCC
T ss_pred cCCCCCEEECCCCCC
Confidence 899999999999985
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=4.4e-21 Score=209.11 Aligned_cols=236 Identities=20% Similarity=0.209 Sum_probs=153.3
Q ss_pred CceEEEEEeccCCCCcccccCCCCceEEEecCCCCCCcc-hhhccCCceeEEEeCCccccccccc-cccccCCCCCCeee
Q 043039 542 KLRHSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMP-SFFDQLTCLRALRIGKYGDDAIERI-PNGIEKLIHLRYLK 619 (949)
Q Consensus 542 ~~r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~-~~~~~l~~Lr~L~L~~~~~~~~~~l-p~~i~~l~~L~~L~ 619 (949)
.++.+.+.++....+|..+ .++|++|++++|.+..++ ..|.++++|++|++++|. +..+ |..++++++|++|+
T Consensus 34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK---ISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC---CCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc---cCccCHhHhhCcCCCCEEE
Confidence 3455555555555555544 256777777777766653 356677777777777766 5544 55677777777777
Q ss_pred ecccCCcccchhhcCCCCCcEEeecCCCCCCcccc-ccccCCCCCeeeCCCccccc---CCcCCCCCCCCcccCccceec
Q 043039 620 LFFVGIEELPETFCELFNLQNLDLRRCSKFKRLPQ-NIGKLVNLRHLIFDEDDLDY---MPKGMGSLTGLRTLSEFVAVS 695 (949)
Q Consensus 620 L~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~---~p~~i~~l~~L~~L~~~~~~~ 695 (949)
+++|.+..+|..+. ++|++|++++|. +..+|. .+..+++|++|++++|.++. .|..++.+ +|+.|++..+
T Consensus 109 L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-- 182 (332)
T 2ft3_A 109 ISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA-- 182 (332)
T ss_dssp CCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS--
T ss_pred CCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC--
Confidence 77777777766554 677777777766 445553 36667777777777766652 33445555 5666653321
Q ss_pred CCCccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCC
Q 043039 696 GGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPH 775 (949)
Q Consensus 696 ~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~ 775 (949)
. +. .+.. ...++|+.|++++|.+... .+..+..+
T Consensus 183 --~-----------------l~---------~l~~---------~~~~~L~~L~l~~n~i~~~---------~~~~l~~l 216 (332)
T 2ft3_A 183 --K-----------------LT---------GIPK---------DLPETLNELHLDHNKIQAI---------ELEDLLRY 216 (332)
T ss_dssp --B-----------------CS---------SCCS---------SSCSSCSCCBCCSSCCCCC---------CTTSSTTC
T ss_pred --C-----------------CC---------ccCc---------cccCCCCEEECCCCcCCcc---------CHHHhcCC
Confidence 0 00 0000 0125777888888877654 34567778
Q ss_pred CCcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCCCCCCCCCCCCcceeeecCCC
Q 043039 776 PNLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMPPLGKLQSLEVLDIWEMH 834 (949)
Q Consensus 776 ~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~ 834 (949)
++|+.|++++|.+.+..|.++..+++|+.|+|++|.+......++.+++|++|+++++.
T Consensus 217 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 217 SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC
T ss_pred CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC
Confidence 88899999888888744557888888999999888777544557888888888888765
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=7.9e-22 Score=231.54 Aligned_cols=137 Identities=19% Similarity=0.192 Sum_probs=116.6
Q ss_pred eccCCCCcccccCCCCceEEEecCCCCCCc-chhhccCCceeEEEeCCcccccccccc-ccccCCCCCCeeeecccCCcc
Q 043039 550 LHYNASFPVSIFNAKKLRSLLIQGYSLQHM-PSFFDQLTCLRALRIGKYGDDAIERIP-NGIEKLIHLRYLKLFFVGIEE 627 (949)
Q Consensus 550 ~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l-~~~~~~l~~Lr~L~L~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~ 627 (949)
.+....+|..+. ++|++|++++|.++.+ |..|.++++|++|++++|. +..++ ..++++++|++|++++|.+..
T Consensus 14 ~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~l~~ 88 (549)
T 2z81_A 14 SRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR---INTIEGDAFYSLGSLEHLDLSDNHLSS 88 (549)
T ss_dssp TSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTSCCCS
T ss_pred CCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCC---cCccChhhccccccCCEEECCCCccCc
Confidence 344556676553 7899999999999876 5678999999999999998 66665 679999999999999999998
Q ss_pred cchh-hcCCCCCcEEeecCCCCCC--ccccccccCCCCCeeeCCCcc-cccCC-cCCCCCCCCcccCccc
Q 043039 628 LPET-FCELFNLQNLDLRRCSKFK--RLPQNIGKLVNLRHLIFDEDD-LDYMP-KGMGSLTGLRTLSEFV 692 (949)
Q Consensus 628 lp~~-l~~L~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~~~-l~~~p-~~i~~l~~L~~L~~~~ 692 (949)
+|+. ++.+++|++|++++|. +. ..|..++++++|++|++++|. +..+| ..++.+++|++|++..
T Consensus 89 ~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 89 LSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157 (549)
T ss_dssp CCHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred cCHHHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence 8765 9999999999999998 55 457789999999999998887 67776 5799999999998654
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=4.3e-21 Score=209.11 Aligned_cols=237 Identities=19% Similarity=0.179 Sum_probs=146.4
Q ss_pred CceEEEEEeccCCCCcccccCCCCceEEEecCCCCCCcch-hhccCCceeEEEeCCccccccccc-cccccCCCCCCeee
Q 043039 542 KLRHSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMPS-FFDQLTCLRALRIGKYGDDAIERI-PNGIEKLIHLRYLK 619 (949)
Q Consensus 542 ~~r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~~-~~~~l~~Lr~L~L~~~~~~~~~~l-p~~i~~l~~L~~L~ 619 (949)
.++.+.+.......+|..+. ++|+.|++++|.++.++. .|.++++|++|+|++|. +..+ |..++.+++|++|+
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK---ISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC---CCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc---CCeeCHHHhcCCCCCCEEE
Confidence 34445444444445554332 566777777777666544 56667777777777666 4444 55667777777777
Q ss_pred ecccCCcccchhhcCCCCCcEEeecCCCCCCccc-cccccCCCCCeeeCCCcccc---cCCcCCCCCCCCcccCccceec
Q 043039 620 LFFVGIEELPETFCELFNLQNLDLRRCSKFKRLP-QNIGKLVNLRHLIFDEDDLD---YMPKGMGSLTGLRTLSEFVAVS 695 (949)
Q Consensus 620 L~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~---~~p~~i~~l~~L~~L~~~~~~~ 695 (949)
+++|.++.+|..+. ++|++|++++|. +..++ ..+.++++|++|++++|.+. ..+..++.+++|+.|++..
T Consensus 107 Ls~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~--- 180 (330)
T 1xku_A 107 LSKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD--- 180 (330)
T ss_dssp CCSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS---
T ss_pred CCCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC---
Confidence 77777776666554 567777777766 44443 34666777777776666664 2334455666666665332
Q ss_pred CCCccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCC
Q 043039 696 GGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPH 775 (949)
Q Consensus 696 ~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~ 775 (949)
+. +. .+.. ...++|+.|++++|.+... .+..+..+
T Consensus 181 -n~-----------------l~---------~l~~---------~~~~~L~~L~l~~n~l~~~---------~~~~~~~l 215 (330)
T 1xku_A 181 -TN-----------------IT---------TIPQ---------GLPPSLTELHLDGNKITKV---------DAASLKGL 215 (330)
T ss_dssp -SC-----------------CC---------SCCS---------SCCTTCSEEECTTSCCCEE---------CTGGGTTC
T ss_pred -Cc-----------------cc---------cCCc---------cccccCCEEECCCCcCCcc---------CHHHhcCC
Confidence 11 00 0000 0115677777777766543 24456677
Q ss_pred CCcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCCCCCCCCCCCCcceeeecCCC
Q 043039 776 PNLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMPPLGKLQSLEVLDIWEMH 834 (949)
Q Consensus 776 ~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~ 834 (949)
++|+.|++++|.+.+..+.++..+++|+.|+|++|.+......+..+++|++|++++|.
T Consensus 216 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC
T ss_pred CCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc
Confidence 78888888888777644556777788888888888776554557777888888887765
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=5.9e-21 Score=216.40 Aligned_cols=302 Identities=16% Similarity=0.152 Sum_probs=210.9
Q ss_pred ccCCceEEEEEeccCCCCcccccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCee
Q 043039 539 CYEKLRHSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYL 618 (949)
Q Consensus 539 ~~~~~r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L 618 (949)
....++.+.+.++....+| .+..+++|++|++++|.++.++ +..+++|++|++++|. +..+| ++++++|++|
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~---l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK---LTNLD--VTPLTKLTYL 111 (457)
T ss_dssp HHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC---CSCCC--CTTCTTCCEE
T ss_pred HcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC---Cceee--cCCCCcCCEE
Confidence 3477888888888777765 6788899999999999888876 7888899999999888 66664 8888999999
Q ss_pred eecccCCcccchhhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCc-ccccCCcCCCCCCCCcccCccceecCC
Q 043039 619 KLFFVGIEELPETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDED-DLDYMPKGMGSLTGLRTLSEFVAVSGG 697 (949)
Q Consensus 619 ~L~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~-~l~~~p~~i~~l~~L~~L~~~~~~~~~ 697 (949)
++++|.++.+| ++.+++|++|++++|. +..+| ++.+++|++|+++.| .+..+ .++.+++|+.|++..+
T Consensus 112 ~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n---- 180 (457)
T 3bz5_A 112 NCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN---- 180 (457)
T ss_dssp ECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS----
T ss_pred ECCCCcCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC----
Confidence 99999888876 7888999999999887 66664 788889999998877 44444 4778888888885542
Q ss_pred CccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCC
Q 043039 698 GKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPN 777 (949)
Q Consensus 698 ~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 777 (949)
..... .+..+ +.|. .+.+.+. .+... .+..+++|+.|++++|.+.+. + +..+++
T Consensus 181 ~l~~l---~l~~l---~~L~-~L~l~~N-~l~~~------~l~~l~~L~~L~Ls~N~l~~i----------p--~~~l~~ 234 (457)
T 3bz5_A 181 KITEL---DVSQN---KLLN-RLNCDTN-NITKL------DLNQNIQLTFLDCSSNKLTEI----------D--VTPLTQ 234 (457)
T ss_dssp CCCCC---CCTTC---TTCC-EEECCSS-CCSCC------CCTTCTTCSEEECCSSCCSCC----------C--CTTCTT
T ss_pred cccee---ccccC---CCCC-EEECcCC-cCCee------ccccCCCCCEEECcCCccccc----------C--ccccCC
Confidence 21111 12222 2232 3333322 12221 267789999999999987652 2 677899
Q ss_pred cCceEEeccccCCCCCchhhcccCCcE----------EEEeccCCCCCCCCCCCCCCcceeeecCCCCcEEeCCccc---
Q 043039 778 LESLQISFYEVKARFPNWILSLNKLRM----------LCLSFCKKCEIMPPLGKLQSLEVLDIWEMHGIKRVGDEVL--- 844 (949)
Q Consensus 778 L~~L~L~~~~~~~~~p~~~~~l~~L~~----------L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~--- 844 (949)
|+.|++++|.+.+ +| +..+++|+. |++++|...+.+| ++.+++|+.|++++|..+..++....
T Consensus 235 L~~L~l~~N~l~~-~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~ 310 (457)
T 3bz5_A 235 LTYFDCSVNPLTE-LD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQAAGIT 310 (457)
T ss_dssp CSEEECCSSCCSC-CC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTTCCCS
T ss_pred CCEEEeeCCcCCC-cC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccCCCcce
Confidence 9999999999988 55 334555554 4555555444444 57789999999999987766653211
Q ss_pred CCCCCCCCccceeeeccccccccccccccccccccccceeccccCccCcCCC
Q 043039 845 GIEIIAFPRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKMLP 896 (949)
Q Consensus 845 ~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 896 (949)
......+++|+.|.+.+. .++.. .+..+++|+.|++++| .++.+|
T Consensus 311 ~L~l~~~~~L~~L~L~~N-~l~~l-----~l~~l~~L~~L~l~~N-~l~~l~ 355 (457)
T 3bz5_A 311 ELDLSQNPKLVYLYLNNT-ELTEL-----DVSHNTKLKSLSCVNA-HIQDFS 355 (457)
T ss_dssp CCCCTTCTTCCEEECTTC-CCSCC-----CCTTCTTCSEEECCSS-CCCBCT
T ss_pred EechhhcccCCEEECCCC-ccccc-----ccccCCcCcEEECCCC-CCCCcc
Confidence 111224566666666542 22222 2568999999999988 444443
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=3.4e-21 Score=208.80 Aligned_cols=231 Identities=26% Similarity=0.334 Sum_probs=169.7
Q ss_pred cCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccchhhcCCCCCcEEeecCCCCCCccccccccCCCCCe
Q 043039 585 QLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRH 664 (949)
Q Consensus 585 ~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 664 (949)
....++.|+|++|. +..+|..++++++|++|+|++|.+..+|..++.+++|++|++++|. +..+|..++++++|++
T Consensus 79 ~~~~l~~L~L~~n~---l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 79 TQPGRVALELRSVP---LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRE 154 (328)
T ss_dssp TSTTCCEEEEESSC---CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCE
T ss_pred cccceeEEEccCCC---chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCE
Confidence 35789999999988 7789988999999999999999999999999999999999999987 6688999999999999
Q ss_pred eeCCCcc-cccCCcCCCCCCCCcccCccceecCCCccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCC
Q 043039 665 LIFDEDD-LDYMPKGMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKK 743 (949)
Q Consensus 665 L~l~~~~-l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~ 743 (949)
|++++|. +..+|..++.. . +. ..+..++
T Consensus 155 L~L~~n~~~~~~p~~~~~~------~--------------------------~~-------------------~~~~~l~ 183 (328)
T 4fcg_A 155 LSIRACPELTELPEPLAST------D--------------------------AS-------------------GEHQGLV 183 (328)
T ss_dssp EEEEEETTCCCCCSCSEEE------C---------------------------C-------------------CCEEEST
T ss_pred EECCCCCCccccChhHhhc------c--------------------------ch-------------------hhhccCC
Confidence 9977643 34444433210 0 00 0133456
Q ss_pred CCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCCCCCC-CCCC
Q 043039 744 NLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMPP-LGKL 822 (949)
Q Consensus 744 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l 822 (949)
+|+.|++++|.+.. ++..+..+++|+.|+|++|.+.+ +|..+..+++|+.|+|++|.+.+.+|. ++.+
T Consensus 184 ~L~~L~L~~n~l~~----------lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l 252 (328)
T 4fcg_A 184 NLQSLRLEWTGIRS----------LPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGR 252 (328)
T ss_dssp TCCEEEEEEECCCC----------CCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC
T ss_pred CCCEEECcCCCcCc----------chHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCC
Confidence 77777777776652 34456666777777777777776 676677777777777777766665554 6666
Q ss_pred CCcceeeecCCCCcEEeCCcccCCCCCCCCccceeeeccccccccccccccccccccccceeccccCccCcCCCCCCCCC
Q 043039 823 QSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKMLPDQVLRS 902 (949)
Q Consensus 823 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l 902 (949)
++|++|+|++|..+ ...|..+..+++|+.|+|++|+.++.+|..+..+
T Consensus 253 ~~L~~L~L~~n~~~--------------------------------~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L 300 (328)
T 4fcg_A 253 APLKRLILKDCSNL--------------------------------LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300 (328)
T ss_dssp CCCCEEECTTCTTC--------------------------------CBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred CCCCEEECCCCCch--------------------------------hhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence 77777776655421 1223345578889999999998999999988899
Q ss_pred CCcceEEEccC
Q 043039 903 TTLKKLEINDC 913 (949)
Q Consensus 903 ~~L~~L~l~~c 913 (949)
++|+.+++..+
T Consensus 301 ~~L~~l~l~~~ 311 (328)
T 4fcg_A 301 PANCIILVPPH 311 (328)
T ss_dssp CTTCEEECCGG
T ss_pred cCceEEeCCHH
Confidence 99998888754
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=1.2e-21 Score=211.19 Aligned_cols=245 Identities=22% Similarity=0.325 Sum_probs=111.1
Q ss_pred CceEEEecCCCCC---CcchhhccCCceeEEEeCC-ccccccccccccccCCCCCCeeeecccCCc-ccchhhcCCCCCc
Q 043039 565 KLRSLLIQGYSLQ---HMPSFFDQLTCLRALRIGK-YGDDAIERIPNGIEKLIHLRYLKLFFVGIE-ELPETFCELFNLQ 639 (949)
Q Consensus 565 ~Lr~L~l~~~~l~---~l~~~~~~l~~Lr~L~L~~-~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~-~lp~~l~~L~~L~ 639 (949)
+++.|++++|.+. .+|..|.++++|++|++++ |.. ...+|..++++++|++|++++|.+. .+|..+..+++|+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l--~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL--VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE--ESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcc--cccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 4455555555444 2444455555555555542 331 2234444555555555555555544 4444455555555
Q ss_pred EEeecCCCCCCccccccccCCCCCeeeCCCcccc-cCCcCCCCCC-CCcccCccceecCCCccCCCccCcccccccccCC
Q 043039 640 NLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLD-YMPKGMGSLT-GLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLR 717 (949)
Q Consensus 640 ~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~-~~p~~i~~l~-~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 717 (949)
+|++++|.....+|..+..+++|++|++++|.++ .+|..++.++ +|+.|++..+..... ....+..+. |.
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~----~~~~~~~l~----L~ 200 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK----IPPTFANLN----LA 200 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE----CCGGGGGCC----CS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc----CChHHhCCc----cc
Confidence 5555554433344545555555555555555544 4444444444 455544322100000 000000000 00
Q ss_pred CceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhh
Q 043039 718 GSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWIL 797 (949)
Q Consensus 718 ~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~ 797 (949)
.+.+.+.. +.......+..+++|+.|++++|.+... +..+..+++|+.|+|++|.+.+.+|.++.
T Consensus 201 -~L~Ls~N~----l~~~~~~~~~~l~~L~~L~L~~N~l~~~----------~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 265 (313)
T 1ogq_A 201 -FVDLSRNM----LEGDASVLFGSDKNTQKIHLAKNSLAFD----------LGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265 (313)
T ss_dssp -EEECCSSE----EEECCGGGCCTTSCCSEEECCSSEECCB----------GGGCCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred -EEECcCCc----ccCcCCHHHhcCCCCCEEECCCCceeee----------cCcccccCCCCEEECcCCcccCcCChHHh
Confidence 00000000 0000011234455566666665554432 22244555666666666666544566666
Q ss_pred cccCCcEEEEeccCCCCCCCCCCCCCCcceeeecCCC
Q 043039 798 SLNKLRMLCLSFCKKCEIMPPLGKLQSLEVLDIWEMH 834 (949)
Q Consensus 798 ~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~ 834 (949)
.+++|+.|+|++|.+.+.+|..+.+++|+.|++.+++
T Consensus 266 ~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp GCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred cCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 6666666666666555555555556666666665554
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=1.5e-21 Score=210.40 Aligned_cols=252 Identities=14% Similarity=0.124 Sum_probs=175.9
Q ss_pred CceeEEEeCCccccccc---cccccccCCCCCCeeeecc-cCCc-ccchhhcCCCCCcEEeecCCCCCCccccccccCCC
Q 043039 587 TCLRALRIGKYGDDAIE---RIPNGIEKLIHLRYLKLFF-VGIE-ELPETFCELFNLQNLDLRRCSKFKRLPQNIGKLVN 661 (949)
Q Consensus 587 ~~Lr~L~L~~~~~~~~~---~lp~~i~~l~~L~~L~L~~-~~i~-~lp~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 661 (949)
.+++.|+|+++. +. .+|..++++++|++|++++ |.+. .+|..++++++|++|++++|.....+|..+.++++
T Consensus 50 ~~l~~L~L~~~~---l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLN---LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCC---CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCC---ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 579999999998 54 6899999999999999995 8776 78999999999999999999855589999999999
Q ss_pred CCeeeCCCcccc-cCCcCCCCCCCCcccCccceecCCCccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhccc
Q 043039 662 LRHLIFDEDDLD-YMPKGMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELE 740 (949)
Q Consensus 662 L~~L~l~~~~l~-~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~ 740 (949)
|++|++++|.+. .+|..++.+++|++|++..+ . +.+.+ ...+.
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N----~-----------------l~~~~---------------p~~l~ 170 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGN----R-----------------ISGAI---------------PDSYG 170 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSS----C-----------------CEEEC---------------CGGGG
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCC----c-----------------ccCcC---------------CHHHh
Confidence 999999999998 68889999999999985542 1 10000 01233
Q ss_pred CCC-CCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCCCCCCC
Q 043039 741 KKK-NLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMPPL 819 (949)
Q Consensus 741 ~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l 819 (949)
.++ +|+.|++++|.+.+. .+..+..++ |+.|++++|.+.+..|..+..+++|+.|+|++|.+...++.+
T Consensus 171 ~l~~~L~~L~L~~N~l~~~---------~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 240 (313)
T 1ogq_A 171 SFSKLFTSMTISRNRLTGK---------IPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV 240 (313)
T ss_dssp CCCTTCCEEECCSSEEEEE---------CCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGC
T ss_pred hhhhcCcEEECcCCeeecc---------CChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcc
Confidence 444 777788777765533 344444554 888888888877666777778888888888888777666667
Q ss_pred CCCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceeeeccccccccccccccccccccccceeccccCccCcCCC
Q 043039 820 GKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKMLP 896 (949)
Q Consensus 820 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 896 (949)
..+++|++|+|++|.-...++..+ ..+++|+.|++.+. ......|.. ..+++|+.|++.+|+.+...|
T Consensus 241 ~~l~~L~~L~Ls~N~l~~~~p~~l-----~~l~~L~~L~Ls~N---~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 241 GLSKNLNGLDLRNNRIYGTLPQGL-----TQLKFLHSLNVSFN---NLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CCCTTCCEEECCSSCCEECCCGGG-----GGCTTCCEEECCSS---EEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred cccCCCCEEECcCCcccCcCChHH-----hcCcCCCEEECcCC---cccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 777888888887765211111111 13445555555432 111122222 456666666666665554433
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=6.4e-21 Score=228.36 Aligned_cols=363 Identities=14% Similarity=0.125 Sum_probs=228.3
Q ss_pred CCceEEEEEeccCCCCc-ccccCCCCceEEEecCCCCCCcch-hhccCCceeEEEeCCccccccccccc-cccCCCCCCe
Q 043039 541 EKLRHSILVLHYNASFP-VSIFNAKKLRSLLIQGYSLQHMPS-FFDQLTCLRALRIGKYGDDAIERIPN-GIEKLIHLRY 617 (949)
Q Consensus 541 ~~~r~l~l~~~~~~~l~-~~~~~~~~Lr~L~l~~~~l~~l~~-~~~~l~~Lr~L~L~~~~~~~~~~lp~-~i~~l~~L~~ 617 (949)
..++++.+.++.+..++ ..|.++++|++|++++|.++.++. .|.++++|++|+|++|. +..+|. .+.++++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~---l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP---IQSLALGAFSGLSSLQK 128 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC---CCEECGGGGTTCTTCCE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc---CCCCCHHHhcCCCCCCE
Confidence 67899999999888876 468899999999999999998854 68999999999999998 888875 5899999999
Q ss_pred eeecccCCcccch-hhcCCCCCcEEeecCCCCCC-ccccccccCCCCCeeeCCCcccccCCc-CCCCCCCCcccC-----
Q 043039 618 LKLFFVGIEELPE-TFCELFNLQNLDLRRCSKFK-RLPQNIGKLVNLRHLIFDEDDLDYMPK-GMGSLTGLRTLS----- 689 (949)
Q Consensus 618 L~L~~~~i~~lp~-~l~~L~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~~~l~~~p~-~i~~l~~L~~L~----- 689 (949)
|+|++|.++.+|+ .++++++|++|++++|.... .+|..++.+++|++|++++|.++.++. .+..+.+++.+.
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence 9999999999875 58999999999999988322 467889999999999999988876532 232222211100
Q ss_pred ----------------------ccceec--------------------------CC-Ccc--------------------
Q 043039 690 ----------------------EFVAVS--------------------------GG-GKY-------------------- 700 (949)
Q Consensus 690 ----------------------~~~~~~--------------------------~~-~~~-------------------- 700 (949)
+..+.. .. ...
T Consensus 209 s~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 209 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred ccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence 000000 00 000
Q ss_pred ----------CCCccCcccc----------------cccccCCCceEEccC----------CCCCChhhh-----hhhcc
Q 043039 701 ----------GSKACNLDGL----------------RHMNHLRGSLKIRGL----------GNVTDVDAA-----KNAEL 739 (949)
Q Consensus 701 ----------~~~~~~l~~L----------------~~L~~L~~~l~i~~~----------~~l~~~~~~-----~~~~l 739 (949)
.........+ .....+. .+.+.++ ..+...... .....
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 367 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ-HLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 367 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCS-EEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCC
T ss_pred hhhcccccchhhhhhhhcccccccccccccccccccccchhhh-hhhcccccccCcCcccchhhhhcccccccCCCCccc
Confidence 0000000000 0000111 2222111 111100000 00112
Q ss_pred cCCCCCCeEEEEecCCCCcchhhhc-----------------------------------------HHHHhhcCCCCCCc
Q 043039 740 EKKKNLISLELEFDKEEEEDEDEVN-----------------------------------------HQAIIEALRPHPNL 778 (949)
Q Consensus 740 ~~~~~L~~L~l~~~~~~~~~~~~~~-----------------------------------------~~~~~~~l~~~~~L 778 (949)
..+++|+.|.++.|........... .......+..++++
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence 2345555555554443211000000 00011234455667
Q ss_pred CceEEeccccCCCCCchhhcccCCcEEEEeccCCCC-CCC-CCCCCCCcceeeecCCCCcEEeCCcccCCCCCCCCccce
Q 043039 779 ESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCE-IMP-PLGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKK 856 (949)
Q Consensus 779 ~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~-~~~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~ 856 (949)
+.++++.|.+....|..+..+++|+.|+|++|.... ..| .++.+++|++|+|++|. ++.+..... ..+++|+.
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~f----~~l~~L~~ 522 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAF----NSLSSLQV 522 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTT----TTCTTCCE
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcChHHH----cCCCCCCE
Confidence 777777777766556667778899999999887544 333 38889999999999886 444433221 14667777
Q ss_pred eeeccccccccccccccccccccccceeccccCccCcCCCCCCCCC-CCcceEEEccCCC
Q 043039 857 FTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKMLPDQVLRS-TTLKKLEINDCPI 915 (949)
Q Consensus 857 L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l-~~L~~L~l~~c~~ 915 (949)
|.+.+ +......|..+..+++|+.|+|++|......|..+.++ ++|+.|++++||-
T Consensus 523 L~Ls~---N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 523 LNMSH---NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp EECTT---SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred EECCC---CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 77755 33333344557789999999999996555566677777 6899999998873
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=5.8e-21 Score=208.18 Aligned_cols=287 Identities=17% Similarity=0.178 Sum_probs=206.1
Q ss_pred CCceEEEecCCCCCCcchhhccCCceeEEEeCCcccccccccc-ccccCCCCCCeeeecccCCccc-chhhcCCCCCcEE
Q 043039 564 KKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIP-NGIEKLIHLRYLKLFFVGIEEL-PETFCELFNLQNL 641 (949)
Q Consensus 564 ~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~l-p~~l~~L~~L~~L 641 (949)
.+++.++++++.++.+|..+ .++|++|++++|. +..++ ..++++++|++|++++|.++.+ |..++.+++|++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNND---ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC--CTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred ccCCEEECCCCCccccCCCC--CCCCeEEECCCCc---CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence 36899999999999888755 3689999999998 76764 5799999999999999999987 6789999999999
Q ss_pred eecCCCCCCccccccccCCCCCeeeCCCcccccCCcC-CCCCCCCcccCccceecCCCccCCCccCcccccccccCCCce
Q 043039 642 DLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKG-MGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSL 720 (949)
Q Consensus 642 ~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l 720 (949)
++++|. +..+|..+. ++|++|++++|.+..+|.. +..+++|++|++..+.... . . .
T Consensus 108 ~L~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~------------~---~-~---- 164 (332)
T 2ft3_A 108 YISKNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN------------S---G-F---- 164 (332)
T ss_dssp ECCSSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG------------G---G-S----
T ss_pred ECCCCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc------------C---C-C----
Confidence 999987 778888776 8999999999999988764 7889999999854421000 0 0 0
Q ss_pred EEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhhccc
Q 043039 721 KIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWILSLN 800 (949)
Q Consensus 721 ~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~ 800 (949)
....+..+ +|+.|++++|.+... +..+ +++|+.|++++|.+.+..|..+..++
T Consensus 165 --------------~~~~~~~l-~L~~L~l~~n~l~~l----------~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~ 217 (332)
T 2ft3_A 165 --------------EPGAFDGL-KLNYLRISEAKLTGI----------PKDL--PETLNELHLDHNKIQAIELEDLLRYS 217 (332)
T ss_dssp --------------CTTSSCSC-CCSCCBCCSSBCSSC----------CSSS--CSSCSCCBCCSSCCCCCCTTSSTTCT
T ss_pred --------------CcccccCC-ccCEEECcCCCCCcc----------Cccc--cCCCCEEECCCCcCCccCHHHhcCCC
Confidence 00112333 777888888776542 2222 26899999999988884557788899
Q ss_pred CCcEEEEeccCCCCCCCC-CCCCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceeeeccccccccccccccccc---
Q 043039 801 KLRMLCLSFCKKCEIMPP-LGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEWEFIEENIT--- 876 (949)
Q Consensus 801 ~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~--- 876 (949)
+|+.|+|++|.+....+. ++.+++|++|++++|. +..++.. ...+++|+.|++.+. .++... +..+.
T Consensus 218 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~-----l~~l~~L~~L~l~~N-~l~~~~--~~~~~~~~ 288 (332)
T 2ft3_A 218 KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAG-----LPDLKLLQVVYLHTN-NITKVG--VNDFCPVG 288 (332)
T ss_dssp TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTT-----GGGCTTCCEEECCSS-CCCBCC--TTSSSCSS
T ss_pred CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChh-----hhcCccCCEEECCCC-CCCccC--hhHccccc
Confidence 999999999988776653 7888999999998875 3333322 125677777777653 222221 11111
Q ss_pred ---cccccceeccccCccC--cCCCCCCCCCCCcceEEEccCC
Q 043039 877 ---IMPQLNSLAIRDCSKL--KMLPDQVLRSTTLKKLEINDCP 914 (949)
Q Consensus 877 ---~l~~L~~L~l~~c~~l--~~lp~~~~~l~~L~~L~l~~c~ 914 (949)
.+++|+.|++.+|+.. ...|..+..+++|+.|++++|.
T Consensus 289 ~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 289 FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 2567888888888755 3445556677888888888775
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=3.4e-20 Score=201.99 Aligned_cols=287 Identities=17% Similarity=0.210 Sum_probs=198.0
Q ss_pred CCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccc-cccCCCCCCeeeecccCCccc-chhhcCCCCCcEE
Q 043039 564 KKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPN-GIEKLIHLRYLKLFFVGIEEL-PETFCELFNLQNL 641 (949)
Q Consensus 564 ~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~l-p~~l~~L~~L~~L 641 (949)
.+++.++++++.++.+|..+. +.|++|++++|. +..++. .++++++|++|++++|.+..+ |..+..+++|++|
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNK---ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSC---CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCc---CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 378999999998888886543 689999999998 777765 688999999999999999887 7789999999999
Q ss_pred eecCCCCCCccccccccCCCCCeeeCCCcccccCCc-CCCCCCCCcccCccceecCCCccCCCccCcccccccccCCCce
Q 043039 642 DLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPK-GMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSL 720 (949)
Q Consensus 642 ~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l 720 (949)
++++|. +..+|..+. ++|++|++++|.+..++. .+..+++|++|++..+ . +. ..
T Consensus 106 ~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n----~-----------------l~-~~ 160 (330)
T 1xku_A 106 YLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN----P-----------------LK-SS 160 (330)
T ss_dssp ECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSS----C-----------------CC-GG
T ss_pred ECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCC----c-----------------CC-cc
Confidence 999987 778887765 789999999999887765 4788888888875431 1 00 00
Q ss_pred EEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhhccc
Q 043039 721 KIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWILSLN 800 (949)
Q Consensus 721 ~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~ 800 (949)
......+..+++|+.|++++|.+... +..+ +++|+.|++++|.+.+..|.++..++
T Consensus 161 ------------~~~~~~~~~l~~L~~L~l~~n~l~~l----------~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~ 216 (330)
T 1xku_A 161 ------------GIENGAFQGMKKLSYIRIADTNITTI----------PQGL--PPSLTELHLDGNKITKVDAASLKGLN 216 (330)
T ss_dssp ------------GBCTTGGGGCTTCCEEECCSSCCCSC----------CSSC--CTTCSEEECTTSCCCEECTGGGTTCT
T ss_pred ------------CcChhhccCCCCcCEEECCCCccccC----------Cccc--cccCCEEECCCCcCCccCHHHhcCCC
Confidence 00012355677888888888876542 2222 26888999988888875577888888
Q ss_pred CCcEEEEeccCCCCCCC-CCCCCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceeeecccccccccccccccc----
Q 043039 801 KLRMLCLSFCKKCEIMP-PLGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEWEFIEENI---- 875 (949)
Q Consensus 801 ~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~---- 875 (949)
+|+.|+|++|.+....+ .++.+++|++|+|++|. +..++.. ...+++|+.|++.+.. ++... +..+
T Consensus 217 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~-----l~~l~~L~~L~l~~N~-i~~~~--~~~f~~~~ 287 (330)
T 1xku_A 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGG-----LADHKYIQVVYLHNNN-ISAIG--SNDFCPPG 287 (330)
T ss_dssp TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTT-----TTTCSSCCEEECCSSC-CCCCC--TTSSSCSS
T ss_pred CCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChh-----hccCCCcCEEECCCCc-CCccC--hhhcCCcc
Confidence 89999998888776555 47788888888888775 2222221 1245666666665431 22111 1111
Q ss_pred --ccccccceeccccCccCc--CCCCCCCCCCCcceEEEccC
Q 043039 876 --TIMPQLNSLAIRDCSKLK--MLPDQVLRSTTLKKLEINDC 913 (949)
Q Consensus 876 --~~l~~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~c 913 (949)
...++|+.|++.+||... ..|..+..+++|+.+++++|
T Consensus 288 ~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 288 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 124667777777776432 23344555667777777665
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=6e-20 Score=202.01 Aligned_cols=275 Identities=17% Similarity=0.177 Sum_probs=192.8
Q ss_pred cCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccc-cccCCCCCCeeeecccCCcccc-hhhcCCCCC
Q 043039 561 FNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPN-GIEKLIHLRYLKLFFVGIEELP-ETFCELFNL 638 (949)
Q Consensus 561 ~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp-~~l~~L~~L 638 (949)
..|+.....+++++.++.+|..+. ++|++|++++|. +..+|. .+.++++|++|++++|.+..++ ..+.++++|
T Consensus 28 ~~C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNR---ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102 (353)
T ss_dssp CEECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCCCeEeeCCCCCccccccccc--ccCcEEECCCCc---CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCC
Confidence 345555667888888888887543 488999999888 777765 6888999999999999988774 568889999
Q ss_pred cEEeecCCCCCCccccc-cccCCCCCeeeCCCcccccCCc--CCCCCCCCcccCccceecCCCccCCCccCccccccccc
Q 043039 639 QNLDLRRCSKFKRLPQN-IGKLVNLRHLIFDEDDLDYMPK--GMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNH 715 (949)
Q Consensus 639 ~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~~p~--~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~ 715 (949)
++|++++|. +..+|.. ++.+++|++|++++|.++.+|. .++.+++|++|++..+ . .
T Consensus 103 ~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n----~----------------~ 161 (353)
T 2z80_A 103 EHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM----D----------------T 161 (353)
T ss_dssp CEEECCSSC-CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEES----S----------------S
T ss_pred CEEECCCCc-CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCC----c----------------c
Confidence 999999887 6677765 7889999999999988888876 5778888888874431 0 0
Q ss_pred CCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCch
Q 043039 716 LRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNW 795 (949)
Q Consensus 716 L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~ 795 (949)
+. .+. ...+..+++|+.|++++|.+... .+..+..+++|+.|++++|.+.. +|..
T Consensus 162 ~~-~~~--------------~~~~~~l~~L~~L~l~~n~l~~~---------~~~~l~~l~~L~~L~l~~n~l~~-~~~~ 216 (353)
T 2z80_A 162 FT-KIQ--------------RKDFAGLTFLEELEIDASDLQSY---------EPKSLKSIQNVSHLILHMKQHIL-LLEI 216 (353)
T ss_dssp CC-EEC--------------TTTTTTCCEEEEEEEEETTCCEE---------CTTTTTTCSEEEEEEEECSCSTT-HHHH
T ss_pred cc-ccC--------------HHHccCCCCCCEEECCCCCcCcc---------CHHHHhccccCCeecCCCCcccc-chhh
Confidence 00 000 01244567788888888876643 35567778888888888888765 5554
Q ss_pred hh-cccCCcEEEEeccCCCCCCCC----CCCCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceeeeccccccccccc
Q 043039 796 IL-SLNKLRMLCLSFCKKCEIMPP----LGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEWEF 870 (949)
Q Consensus 796 ~~-~l~~L~~L~L~~~~~~~~~~~----l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~ 870 (949)
+. .+++|+.|++++|.+....+. ....+.++.+++.++ .+.+. ....
T Consensus 217 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~------------------------~l~~~----~l~~ 268 (353)
T 2z80_A 217 FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV------------------------KITDE----SLFQ 268 (353)
T ss_dssp HHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC------------------------BCCHH----HHHH
T ss_pred hhhhcccccEEECCCCccccccccccccccccchhhccccccc------------------------cccCc----chhh
Confidence 43 578888888888876543221 122333444443322 11110 1112
Q ss_pred cccccccccccceeccccCccCcCCCCCC-CCCCCcceEEEccCCC
Q 043039 871 IEENITIMPQLNSLAIRDCSKLKMLPDQV-LRSTTLKKLEINDCPI 915 (949)
Q Consensus 871 ~~~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~c~~ 915 (949)
.|..+..+++|+.|++++| .++.+|..+ ..+++|+.|++++|+.
T Consensus 269 l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp HHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 2345668999999999999 677899875 7899999999999974
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=4.1e-19 Score=201.10 Aligned_cols=302 Identities=17% Similarity=0.201 Sum_probs=166.5
Q ss_pred CCceEEEEEeccCCCCcccccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeee
Q 043039 541 EKLRHSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKL 620 (949)
Q Consensus 541 ~~~r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L 620 (949)
..++.+.+.++....+|.. +++|++|++++|.+..++.. .++|++|++++|. +..+| .++++++|++|++
T Consensus 91 ~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~---l~~lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ---LEKLP-ELQNSSFLKIIDV 160 (454)
T ss_dssp TTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC---CSSCC-CCTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCC---CCCCc-ccCCCCCCCEEEC
Confidence 5677777777766665542 36777777777777766542 1567777777776 66676 4777777888888
Q ss_pred cccCCcccchhhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccccCCcCCCCCCCCcccCccceecCCCcc
Q 043039 621 FFVGIEELPETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEFVAVSGGGKY 700 (949)
Q Consensus 621 ~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~ 700 (949)
++|.++.+|..+ .+|++|++++|. +..+| .++.+++|++|++++|.++.+|... ++|+.|++..+ ...
T Consensus 161 ~~N~l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n----~l~ 228 (454)
T 1jl5_A 161 DNNSLKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNN----ILE 228 (454)
T ss_dssp CSSCCSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSS----CCS
T ss_pred CCCcCcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCC----cCC
Confidence 777777776543 477777777776 55666 5777777777777777777766543 46666664432 110
Q ss_pred CCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCc
Q 043039 701 GSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLES 780 (949)
Q Consensus 701 ~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 780 (949)
.+..+..++.|+ .+.+.+. .+..+. ...++|+.|++++|.+.+. +. .+++|+.
T Consensus 229 -----~lp~~~~l~~L~-~L~l~~N-~l~~l~-------~~~~~L~~L~l~~N~l~~l----------~~---~~~~L~~ 281 (454)
T 1jl5_A 229 -----ELPELQNLPFLT-TIYADNN-LLKTLP-------DLPPSLEALNVRDNYLTDL----------PE---LPQSLTF 281 (454)
T ss_dssp -----SCCCCTTCTTCC-EEECCSS-CCSSCC-------SCCTTCCEEECCSSCCSCC----------CC---CCTTCCE
T ss_pred -----cccccCCCCCCC-EEECCCC-cCCccc-------ccccccCEEECCCCccccc----------Cc---ccCcCCE
Confidence 111122222222 3333321 111110 1235677777776665432 11 1356777
Q ss_pred eEEeccccCCCCCchhhcccCCcEEEEeccCCCCCCCCCCCC-CCcceeeecCCCCcEEeCCcccCCCCCCCCccceeee
Q 043039 781 LQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMPPLGKL-QSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTL 859 (949)
Q Consensus 781 L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l-~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l 859 (949)
|++++|.+.+ +|.. .++|+.|++++|.+.. ++ .+ ++|++|+++++. +..+ +..+++|+.|++
T Consensus 282 L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~---~~~~~L~~L~Ls~N~-l~~l--------p~~~~~L~~L~L 344 (454)
T 1jl5_A 282 LDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LC---DLPPSLEELNVSNNK-LIEL--------PALPPRLERLIA 344 (454)
T ss_dssp EECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-EC---CCCTTCCEEECCSSC-CSCC--------CCCCTTCCEEEC
T ss_pred EECcCCccCc-ccCc---CCcCCEEECcCCcCCc-cc---CCcCcCCEEECCCCc-cccc--------cccCCcCCEEEC
Confidence 7777776665 3321 2566777777665543 11 22 467777776654 2111 113567777777
Q ss_pred ccccccccccccccccccccccceeccccCccCc--CCCCCCCCC-------------CCcceEEEccCCC
Q 043039 860 WSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLK--MLPDQVLRS-------------TTLKKLEINDCPI 915 (949)
Q Consensus 860 ~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~--~lp~~~~~l-------------~~L~~L~l~~c~~ 915 (949)
.++ .+. ..|. .+++|+.|++++|+... .+|..+..+ ++|+.|++++|+.
T Consensus 345 ~~N-~l~---~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 345 SFN-HLA---EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408 (454)
T ss_dssp CSS-CCS---CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------
T ss_pred CCC-ccc---cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcC
Confidence 553 222 2323 36677777777775444 466666555 6677777777664
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=7.1e-19 Score=205.02 Aligned_cols=118 Identities=19% Similarity=0.189 Sum_probs=76.1
Q ss_pred CceEEEEEeccCCCCcccccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeec
Q 043039 542 KLRHSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLF 621 (949)
Q Consensus 542 ~~r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~ 621 (949)
.++.+.+.++.+..+|..+. ++|++|++++|.++.+|. .+++|++|+|++|. +..+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~---l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ---LTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC---CSCCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc---CCcCCC---CCCCCCEEECc
Confidence 45666666666666665543 567777777777666665 45667777777766 556665 56667777777
Q ss_pred ccCCcccchhhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccccCCc
Q 043039 622 FVGIEELPETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPK 677 (949)
Q Consensus 622 ~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~ 677 (949)
+|.++.+|. .+++|++|++++|. +..+|.. +++|++|++++|.++.+|.
T Consensus 110 ~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l~~l~~ 158 (622)
T 3g06_A 110 SNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLASLPA 158 (622)
T ss_dssp SCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSCCCC
T ss_pred CCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcCCCcCC
Confidence 777766665 45667777777665 5556653 3666777766666666654
No 53
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=1.7e-18 Score=195.94 Aligned_cols=299 Identities=19% Similarity=0.206 Sum_probs=218.8
Q ss_pred CCceEEEEEeccCCCCcccccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeee
Q 043039 541 EKLRHSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKL 620 (949)
Q Consensus 541 ~~~r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L 620 (949)
..++++.+.++....+|.. .++|++|++++|.++.+|.. +++|++|++++|. +..+|.. .++|++|++
T Consensus 71 ~~l~~L~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~---l~~l~~~---~~~L~~L~L 138 (454)
T 1jl5_A 71 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN---LKALSDL---PPLLEYLGV 138 (454)
T ss_dssp HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC---CSCCCSC---CTTCCEEEC
T ss_pred cCCCEEEecCCccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc---cCcccCC---CCCCCEEEC
Confidence 3466777777777666652 47899999999999988863 4789999999998 6665542 268999999
Q ss_pred cccCCcccchhhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccccCCcCCCCCCCCcccCccceecCCCcc
Q 043039 621 FFVGIEELPETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEFVAVSGGGKY 700 (949)
Q Consensus 621 ~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~ 700 (949)
++|.++.+| .++.+++|++|++++|. +..+|..+ .+|++|++++|.++.+| .++.+++|+.|++..+... . .
T Consensus 139 ~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~-~-l 210 (454)
T 1jl5_A 139 SNNQLEKLP-ELQNSSFLKIIDVDNNS-LKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLK-K-L 210 (454)
T ss_dssp CSSCCSSCC-CCTTCTTCCEEECCSSC-CSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS-S-C
T ss_pred cCCCCCCCc-ccCCCCCCCEEECCCCc-CcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCC-c-C
Confidence 999999999 69999999999999997 77788654 59999999999999998 6999999999986542111 1 0
Q ss_pred CCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCc
Q 043039 701 GSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLES 780 (949)
Q Consensus 701 ~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 780 (949)
..... .|. .+.+.+. .+..+. .+..+++|+.|++++|.+.+. +. .+++|+.
T Consensus 211 ---~~~~~------~L~-~L~l~~n-~l~~lp-----~~~~l~~L~~L~l~~N~l~~l----------~~---~~~~L~~ 261 (454)
T 1jl5_A 211 ---PDLPL------SLE-SIVAGNN-ILEELP-----ELQNLPFLTTIYADNNLLKTL----------PD---LPPSLEA 261 (454)
T ss_dssp ---CCCCT------TCC-EEECCSS-CCSSCC-----CCTTCTTCCEEECCSSCCSSC----------CS---CCTTCCE
T ss_pred ---CCCcC------ccc-EEECcCC-cCCccc-----ccCCCCCCCEEECCCCcCCcc----------cc---cccccCE
Confidence 11111 222 3444332 122211 266789999999999877642 11 2478999
Q ss_pred eEEeccccCCCCCchhhcccCCcEEEEeccCCCCCCCCCCCCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceeeec
Q 043039 781 LQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMPPLGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLW 860 (949)
Q Consensus 781 L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~ 860 (949)
|++++|.+.+ +|.+ +++|+.|++++|.+.+. +.+ .++|++|++++|. +..++. ..++|+.|++.
T Consensus 262 L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~--~~~L~~L~l~~N~-l~~i~~--------~~~~L~~L~Ls 325 (454)
T 1jl5_A 262 LNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL--PPNLYYLNASSNE-IRSLCD--------LPPSLEELNVS 325 (454)
T ss_dssp EECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC--CTTCCEEECCSSC-CSEECC--------CCTTCCEEECC
T ss_pred EECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cCc--CCcCCEEECcCCc-CCcccC--------CcCcCCEEECC
Confidence 9999999887 7765 47899999999976652 221 2789999998876 332221 23588999887
Q ss_pred cccccccccccccccccccccceeccccCccCcCCCCCCCCCCCcceEEEccCCC
Q 043039 861 SLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKMLPDQVLRSTTLKKLEINDCPI 915 (949)
Q Consensus 861 ~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 915 (949)
+. .+.. .|. .+++|+.|++++| .++.+|. .+++|+.|++++|+.
T Consensus 326 ~N-~l~~---lp~---~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 326 NN-KLIE---LPA---LPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNPL 369 (454)
T ss_dssp SS-CCSC---CCC---CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCC
T ss_pred CC-cccc---ccc---cCCcCCEEECCCC-ccccccc---hhhhccEEECCCCCC
Confidence 63 2332 333 3689999999999 6778887 468999999999875
No 54
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=2.5e-19 Score=214.51 Aligned_cols=135 Identities=24% Similarity=0.272 Sum_probs=116.5
Q ss_pred cCCCCcccccCCCCceEEEecCCCCCCcch-hhccCCceeEEEeCCccccccccccc-cccCCCCCCeeeecccCCcccc
Q 043039 552 YNASFPVSIFNAKKLRSLLIQGYSLQHMPS-FFDQLTCLRALRIGKYGDDAIERIPN-GIEKLIHLRYLKLFFVGIEELP 629 (949)
Q Consensus 552 ~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~~-~~~~l~~Lr~L~L~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp 629 (949)
....+|..+. +.+++|+|++|.++.++. .|.++++|++|+|++|. +..+|+ .|.+|++|++|+|++|.++.+|
T Consensus 42 ~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~---i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~ 116 (635)
T 4g8a_A 42 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILTGNPIQSLA 116 (635)
T ss_dssp CCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc---CCCcChhHhcCCCCCCEEEccCCcCCCCC
Confidence 3455676542 579999999999999864 79999999999999998 888865 5899999999999999999998
Q ss_pred h-hhcCCCCCcEEeecCCCCCCcccc-ccccCCCCCeeeCCCccccc--CCcCCCCCCCCcccCccc
Q 043039 630 E-TFCELFNLQNLDLRRCSKFKRLPQ-NIGKLVNLRHLIFDEDDLDY--MPKGMGSLTGLRTLSEFV 692 (949)
Q Consensus 630 ~-~l~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~--~p~~i~~l~~L~~L~~~~ 692 (949)
+ .|.++++|++|+|++|. +..+|. .++++++|++|++++|.+.. +|..++.+++|++|++..
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp GGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred HHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC
Confidence 5 57999999999999998 777775 58999999999999999875 467789999999998665
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=5.2e-19 Score=190.36 Aligned_cols=243 Identities=21% Similarity=0.174 Sum_probs=162.2
Q ss_pred EEEEEeccCCCCcccccCCCCceEEEecCCCCCCcch-hhccCCceeEEEeCCccccccccccccccCCCCCCeeeeccc
Q 043039 545 HSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMPS-FFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFV 623 (949)
Q Consensus 545 ~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~~-~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~ 623 (949)
.+.........+|..+. ++|++|++++|.+..+|. .|.++++|++|+|++|....+...|..+..+++|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 34444444555565443 678888888888887765 367888888888888873222223566677888888888888
Q ss_pred CCcccchhhcCCCCCcEEeecCCCCCCccc--cccccCCCCCeeeCCCcccccCC-cCCCCCCCCcccCccceecCCCcc
Q 043039 624 GIEELPETFCELFNLQNLDLRRCSKFKRLP--QNIGKLVNLRHLIFDEDDLDYMP-KGMGSLTGLRTLSEFVAVSGGGKY 700 (949)
Q Consensus 624 ~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~l~~~p-~~i~~l~~L~~L~~~~~~~~~~~~ 700 (949)
.+..+|..+..+++|++|++++|. +..+| ..+..+++|++|++++|.+...+ ..++.+++|++|++..+....
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--- 164 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE--- 164 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG---
T ss_pred ccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc---
Confidence 888888778888888888888876 55555 36777888888888887776543 446777777777644310000
Q ss_pred CCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCc
Q 043039 701 GSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLES 780 (949)
Q Consensus 701 ~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 780 (949)
.. ....+..+++|+.|++++|.+... .+..+..+++|+.
T Consensus 165 ------------------~~--------------~~~~~~~l~~L~~L~Ls~n~l~~~---------~~~~~~~l~~L~~ 203 (306)
T 2z66_A 165 ------------------NF--------------LPDIFTELRNLTFLDLSQCQLEQL---------SPTAFNSLSSLQV 203 (306)
T ss_dssp ------------------GE--------------ECSCCTTCTTCCEEECTTSCCCEE---------CTTTTTTCTTCCE
T ss_pred ------------------cc--------------chhHHhhCcCCCEEECCCCCcCCc---------CHHHhcCCCCCCE
Confidence 00 001244556777777777766543 3455667778888
Q ss_pred eEEeccccCCCCCchhhcccCCcEEEEeccCCCCCCCC-CCCCC-CcceeeecCCC
Q 043039 781 LQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMPP-LGKLQ-SLEVLDIWEMH 834 (949)
Q Consensus 781 L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~-~L~~L~L~~~~ 834 (949)
|++++|.+.+..+..+..+++|+.|+|++|.+....+. +..++ +|++|+|++++
T Consensus 204 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp EECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred EECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 88888877763344566778888888888877665543 66664 78888887665
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=9.2e-18 Score=195.67 Aligned_cols=258 Identities=17% Similarity=0.164 Sum_probs=173.5
Q ss_pred CCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccchhhcCCCCCcEEee
Q 043039 564 KKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPETFCELFNLQNLDL 643 (949)
Q Consensus 564 ~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L~~L~L 643 (949)
.+++.|++++|.++.+|..+. ++|+.|+|++|. +..+|. .+++|++|+|++|.++.+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~---l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNN---LTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCC---CSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCC---CCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence 458888998888888887554 688899998887 777776 57888999999988888887 6788899999
Q ss_pred cCCCCCCccccccccCCCCCeeeCCCcccccCCcCCCCCCCCcccCccceecCCCccCCCccCcccccccccCCCceEEc
Q 043039 644 RRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKIR 723 (949)
Q Consensus 644 ~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~ 723 (949)
++|. +..+|. .+++|+.|++++|.++.+|..+ ++|++|++..| . +.
T Consensus 109 s~N~-l~~l~~---~l~~L~~L~L~~N~l~~lp~~l---~~L~~L~Ls~N----~-----------------l~------ 154 (622)
T 3g06_A 109 FSNP-LTHLPA---LPSGLCKLWIFGNQLTSLPVLP---PGLQELSVSDN----Q-----------------LA------ 154 (622)
T ss_dssp CSCC-CCCCCC---CCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSS----C-----------------CS------
T ss_pred cCCc-CCCCCC---CCCCcCEEECCCCCCCcCCCCC---CCCCEEECcCC----c-----------------CC------
Confidence 8887 777776 5678888888888888888653 67777774431 1 00
Q ss_pred cCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhhcccCCc
Q 043039 724 GLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWILSLNKLR 803 (949)
Q Consensus 724 ~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~ 803 (949)
.++ ....+|+.|.+++|.+... + ..+++|+.|++++|.+.+ +|.. +++|+
T Consensus 155 ~l~-------------~~~~~L~~L~L~~N~l~~l----------~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~ 204 (622)
T 3g06_A 155 SLP-------------ALPSELCKLWAYNNQLTSL----------P---MLPSGLQELSVSDNQLAS-LPTL---PSELY 204 (622)
T ss_dssp CCC-------------CCCTTCCEEECCSSCCSCC----------C---CCCTTCCEEECCSSCCSC-CCCC---CTTCC
T ss_pred CcC-------------CccCCCCEEECCCCCCCCC----------c---ccCCCCcEEECCCCCCCC-CCCc---cchhh
Confidence 000 0124566666666655432 1 335677777777777666 5543 36677
Q ss_pred EEEEeccCCCCCCCCCCCCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceeeeccccccccccccccccccccccce
Q 043039 804 MLCLSFCKKCEIMPPLGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEWEFIEENITIMPQLNS 883 (949)
Q Consensus 804 ~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~ 883 (949)
.|++++|.+.. +|. .+++|+.|+|++|. ++.++ ..+++|+.|.+.+. .+. ..|. .+++|+.
T Consensus 205 ~L~L~~N~l~~-l~~--~~~~L~~L~Ls~N~-L~~lp--------~~l~~L~~L~Ls~N-~L~---~lp~---~~~~L~~ 265 (622)
T 3g06_A 205 KLWAYNNRLTS-LPA--LPSGLKELIVSGNR-LTSLP--------VLPSELKELMVSGN-RLT---SLPM---LPSGLLS 265 (622)
T ss_dssp EEECCSSCCSS-CCC--CCTTCCEEECCSSC-CSCCC--------CCCTTCCEEECCSS-CCS---CCCC---CCTTCCE
T ss_pred EEECcCCcccc-cCC--CCCCCCEEEccCCc-cCcCC--------CCCCcCcEEECCCC-CCC---cCCc---ccccCcE
Confidence 77777776553 222 24677777776664 22221 24567777777653 222 2222 4677778
Q ss_pred eccccCccCcCCCCCCCCCCCcceEEEccCCCh
Q 043039 884 LAIRDCSKLKMLPDQVLRSTTLKKLEINDCPIL 916 (949)
Q Consensus 884 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 916 (949)
|+|++| .++.+|..+..+++|+.|++++|+.-
T Consensus 266 L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 266 LSVYRN-QLTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp EECCSS-CCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred EeCCCC-CCCcCCHHHhhccccCEEEecCCCCC
Confidence 888777 56677777777778888888877743
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=1.4e-18 Score=186.98 Aligned_cols=242 Identities=19% Similarity=0.231 Sum_probs=168.2
Q ss_pred eEEEecCCCCCCcchhhccCCceeEEEeCCcccccccccccc-ccCCCCCCeeeecccCCccc---chhhcCCCCCcEEe
Q 043039 567 RSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNG-IEKLIHLRYLKLFFVGIEEL---PETFCELFNLQNLD 642 (949)
Q Consensus 567 r~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~-i~~l~~L~~L~L~~~~i~~l---p~~l~~L~~L~~L~ 642 (949)
+.++++++.++.+|..+ .++|+.|++++|. +..+|.. +.++++|++|++++|.+..+ |..+..+++|++|+
T Consensus 10 ~~l~c~~~~l~~ip~~~--~~~l~~L~L~~n~---l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNK---LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCCEEECCSSC---CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CEEEcCCCCcccCCCCC--CCCCCEEECCCCc---cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 46777777777777643 2578888888887 6677764 67888888888888887755 56777788888888
Q ss_pred ecCCCCCCccccccccCCCCCeeeCCCcccccCCc--CCCCCCCCcccCccceecCCCccCCCccCcccccccccCCCce
Q 043039 643 LRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPK--GMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSL 720 (949)
Q Consensus 643 L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~--~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l 720 (949)
+++|. +..+|..+..+++|++|++++|.++.++. .+..+++|++|+
T Consensus 85 Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~------------------------------- 132 (306)
T 2z66_A 85 LSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD------------------------------- 132 (306)
T ss_dssp CCSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEE-------------------------------
T ss_pred CCCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEE-------------------------------
Confidence 88877 66777778888888888887777766553 344444444444
Q ss_pred EEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCC-CCCchhhcc
Q 043039 721 KIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKA-RFPNWILSL 799 (949)
Q Consensus 721 ~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~-~~p~~~~~l 799 (949)
+++|.+... .+..+..+++|+.|++++|.+.+ .+|..+..+
T Consensus 133 -----------------------------l~~n~l~~~---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 174 (306)
T 2z66_A 133 -----------------------------ISHTHTRVA---------FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 174 (306)
T ss_dssp -----------------------------CTTSCCEEC---------STTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred -----------------------------CCCCcCCcc---------chhhcccCcCCCEEECCCCccccccchhHHhhC
Confidence 333332211 23345567788889988888765 467788888
Q ss_pred cCCcEEEEeccCCCCCCC-CCCCCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceeeeccccccccccccccccccc
Q 043039 800 NKLRMLCLSFCKKCEIMP-PLGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEWEFIEENITIM 878 (949)
Q Consensus 800 ~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l 878 (949)
++|+.|+|++|.+....+ .++.+++|++|++++|. +..+ .+..+..+
T Consensus 175 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~-------------------------------~~~~~~~l 222 (306)
T 2z66_A 175 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSL-------------------------------DTFPYKCL 222 (306)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBC-------------------------------CSGGGTTC
T ss_pred cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCcc-------------------------------ChhhccCc
Confidence 888888888887776544 37778888888887664 1100 01123457
Q ss_pred cccceeccccCccCcCCCCCCCCCC-CcceEEEccCCC
Q 043039 879 PQLNSLAIRDCSKLKMLPDQVLRST-TLKKLEINDCPI 915 (949)
Q Consensus 879 ~~L~~L~l~~c~~l~~lp~~~~~l~-~L~~L~l~~c~~ 915 (949)
++|+.|++++|+.....|..+..++ +|+.|++++|+.
T Consensus 223 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp TTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred ccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 7888888888865556666666664 888888888774
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=2.7e-18 Score=195.51 Aligned_cols=239 Identities=21% Similarity=0.234 Sum_probs=177.4
Q ss_pred ceEEEEEeccCCCCcccccCCCCceEEEecCCCCCCc-chhhccCCceeEEEeCCcccccccccc-ccccCCCCCCeeee
Q 043039 543 LRHSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHM-PSFFDQLTCLRALRIGKYGDDAIERIP-NGIEKLIHLRYLKL 620 (949)
Q Consensus 543 ~r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l-~~~~~~l~~Lr~L~L~~~~~~~~~~lp-~~i~~l~~L~~L~L 620 (949)
...+...+.....+|..+. ++++.|++++|.+..+ +..|.++++|+.|+|++|. +..++ ..+.++++|++|+|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS---IRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEEC
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc---cCCcChhhccCcccCCEEEC
Confidence 3445544455556665543 6788888888888876 5568888888888888887 65554 56888888888888
Q ss_pred cccCCcccchh-hcCCCCCcEEeecCCCCCCcccc-ccccCCCCCeeeCCC-cccccCCc-CCCCCCCCcccCccceecC
Q 043039 621 FFVGIEELPET-FCELFNLQNLDLRRCSKFKRLPQ-NIGKLVNLRHLIFDE-DDLDYMPK-GMGSLTGLRTLSEFVAVSG 696 (949)
Q Consensus 621 ~~~~i~~lp~~-l~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~-~~l~~~p~-~i~~l~~L~~L~~~~~~~~ 696 (949)
++|.++.+|.. +..+++|++|+|++|. +..+|. .+.++++|++|++++ +.+..+|. .+..+++|+.|++..+
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n--- 206 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC--- 206 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS---
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC---
Confidence 88888888754 7788888888888887 666664 678888888888765 66666665 4777888888874431
Q ss_pred CCccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCC
Q 043039 697 GGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHP 776 (949)
Q Consensus 697 ~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 776 (949)
. +. .++ .+..+++|+.|++++|.+... .+..|..++
T Consensus 207 -~-----------------l~------~~~-----------~~~~l~~L~~L~Ls~N~l~~~---------~~~~~~~l~ 242 (452)
T 3zyi_A 207 -N-----------------IK------DMP-----------NLTPLVGLEELEMSGNHFPEI---------RPGSFHGLS 242 (452)
T ss_dssp -C-----------------CS------SCC-----------CCTTCTTCCEEECTTSCCSEE---------CGGGGTTCT
T ss_pred -c-----------------cc------ccc-----------cccccccccEEECcCCcCccc---------CcccccCcc
Confidence 1 10 000 144567888888888887654 456677888
Q ss_pred CcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCCCCCC-CCCCCCcceeeecCCC
Q 043039 777 NLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMPP-LGKLQSLEVLDIWEMH 834 (949)
Q Consensus 777 ~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~ 834 (949)
+|+.|+|++|.+....|..+..+++|+.|+|++|.+....+. +..+++|+.|+|.+++
T Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 999999999988875677788889999999999987765554 6788999999998776
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=4.7e-18 Score=192.76 Aligned_cols=239 Identities=21% Similarity=0.265 Sum_probs=173.4
Q ss_pred ceEEEEEeccCCCCcccccCCCCceEEEecCCCCCCcc-hhhccCCceeEEEeCCcccccccccc-ccccCCCCCCeeee
Q 043039 543 LRHSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMP-SFFDQLTCLRALRIGKYGDDAIERIP-NGIEKLIHLRYLKL 620 (949)
Q Consensus 543 ~r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~-~~~~~l~~Lr~L~L~~~~~~~~~~lp-~~i~~l~~L~~L~L 620 (949)
.+.+.........+|..+. ++++.|++++|.+..++ ..|.++++|++|+|++|. +..++ ..+.++++|++|+|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~---i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH---IRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC---CCEECGGGGTTCSSCCEEEC
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc---CCccChhhccCCccCCEEEC
Confidence 3445555555566666553 67888888888887764 567888888888888887 55554 56788888888888
Q ss_pred cccCCcccch-hhcCCCCCcEEeecCCCCCCcccc-ccccCCCCCeeeCCC-cccccCCc-CCCCCCCCcccCccceecC
Q 043039 621 FFVGIEELPE-TFCELFNLQNLDLRRCSKFKRLPQ-NIGKLVNLRHLIFDE-DDLDYMPK-GMGSLTGLRTLSEFVAVSG 696 (949)
Q Consensus 621 ~~~~i~~lp~-~l~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~-~~l~~~p~-~i~~l~~L~~L~~~~~~~~ 696 (949)
++|.++.+|. .+..+++|++|+|++|. +..+|. .+..+++|++|++++ +.+..++. .+..+++|+.|++..+
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n--- 195 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC--- 195 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS---
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC---
Confidence 8888888875 57788888888888877 555554 677888888888766 55666654 4777888888874431
Q ss_pred CCccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCC
Q 043039 697 GGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHP 776 (949)
Q Consensus 697 ~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 776 (949)
. +. .++ .+..+++|+.|++++|.+... .+..|..++
T Consensus 196 -~-----------------l~------~~~-----------~~~~l~~L~~L~Ls~N~l~~~---------~~~~~~~l~ 231 (440)
T 3zyj_A 196 -N-----------------LR------EIP-----------NLTPLIKLDELDLSGNHLSAI---------RPGSFQGLM 231 (440)
T ss_dssp -C-----------------CS------SCC-----------CCTTCSSCCEEECTTSCCCEE---------CTTTTTTCT
T ss_pred -c-----------------Cc------ccc-----------ccCCCcccCEEECCCCccCcc---------ChhhhccCc
Confidence 1 00 000 134567788888888877654 355677888
Q ss_pred CcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCCCCCC-CCCCCCcceeeecCCC
Q 043039 777 NLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMPP-LGKLQSLEVLDIWEMH 834 (949)
Q Consensus 777 ~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~ 834 (949)
+|+.|+|++|.+....|..+..+++|+.|+|++|.+....+. +..+++|+.|+|.+++
T Consensus 232 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 232 HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 899999988888875577778888999999998887765554 6788889999988776
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=2.2e-18 Score=183.25 Aligned_cols=217 Identities=20% Similarity=0.205 Sum_probs=114.0
Q ss_pred EEEecCCCCCCcchhhccCCceeEEEeCCcccccccccc-ccccCCCCCCeeeecccCCccc-chhhcCCCCCcEEeecC
Q 043039 568 SLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIP-NGIEKLIHLRYLKLFFVGIEEL-PETFCELFNLQNLDLRR 645 (949)
Q Consensus 568 ~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~l-p~~l~~L~~L~~L~L~~ 645 (949)
+++++++.++.+|..+ .++|+.|++++|. +..+| ..+..+++|++|++++|.+..+ |..+..+++|++|++++
T Consensus 15 ~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~---i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGI--PAASQRIFLHGNR---ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp EEECCSSCCSSCCTTC--CTTCSEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEEcCcCCcccCCcCC--CCCceEEEeeCCc---CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 4444444444444322 2345555555554 33333 2344555555555555555444 34455555555555555
Q ss_pred CCCCCcc-ccccccCCCCCeeeCCCcccccC-CcCCCCCCCCcccCccceecCCCccCCCccCcccccccccCCCceEEc
Q 043039 646 CSKFKRL-PQNIGKLVNLRHLIFDEDDLDYM-PKGMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKIR 723 (949)
Q Consensus 646 ~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~~-p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~ 723 (949)
|..+..+ |..+..+++|++|++++|.++.+ |..++.+++|++|++..+ . +.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n----~-----------------l~------ 142 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN----A-----------------LQ------ 142 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS----C-----------------CC------
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC----c-----------------cc------
Confidence 4433333 34445555555555555555444 233444555555542220 0 00
Q ss_pred cCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhhcccCCc
Q 043039 724 GLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWILSLNKLR 803 (949)
Q Consensus 724 ~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~ 803 (949)
.+. ...+..+++|+.|++++|.+... ....+..+++|+.|++++|.+.+..|.++..+++|+
T Consensus 143 ---~~~------~~~~~~l~~L~~L~l~~n~l~~~---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 204 (285)
T 1ozn_A 143 ---ALP------DDTFRDLGNLTHLFLHGNRISSV---------PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204 (285)
T ss_dssp ---CCC------TTTTTTCTTCCEEECCSSCCCEE---------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred ---ccC------HhHhccCCCccEEECCCCccccc---------CHHHhcCccccCEEECCCCcccccCHhHccCccccc
Confidence 000 00123345555555555554432 122355667788888888777775577777788888
Q ss_pred EEEEeccCCCCCCCC-CCCCCCcceeeecCCC
Q 043039 804 MLCLSFCKKCEIMPP-LGKLQSLEVLDIWEMH 834 (949)
Q Consensus 804 ~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~ 834 (949)
.|++++|.+....+. +..+++|+.|++++++
T Consensus 205 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp EEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred EeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 888888877665443 6778888888887765
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=2.8e-18 Score=188.66 Aligned_cols=264 Identities=16% Similarity=0.130 Sum_probs=163.3
Q ss_pred EEEeccCCCCcccccCCCCceEEEecCCCCCCcch-hhccCCceeEEEeCCccccccccc-cccccCCCCCCeeeecccC
Q 043039 547 ILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMPS-FFDQLTCLRALRIGKYGDDAIERI-PNGIEKLIHLRYLKLFFVG 624 (949)
Q Consensus 547 ~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~~-~~~~l~~Lr~L~L~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~ 624 (949)
...++....+|..+. ++|++|++++|.++.++. .|.++++|++|++++|. +..+ |..++++++|++|++++|.
T Consensus 37 ~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 37 KGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG---INTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp ECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECCSSC
T ss_pred eCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc---cCccCHhhcCCCCCCCEEECCCCc
Confidence 333444555565443 478888888888777655 67778888888888776 5555 3457788888888888888
Q ss_pred Ccccchh-hcCCCCCcEEeecCCCCCCcccc--ccccCCCCCeeeCCCc-ccccCC-cCCCCCCCCcccCccceecCCCc
Q 043039 625 IEELPET-FCELFNLQNLDLRRCSKFKRLPQ--NIGKLVNLRHLIFDED-DLDYMP-KGMGSLTGLRTLSEFVAVSGGGK 699 (949)
Q Consensus 625 i~~lp~~-l~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~-~l~~~p-~~i~~l~~L~~L~~~~~~~~~~~ 699 (949)
++.+|.. +..+++|++|++++|. +..+|. .+..+++|++|++++| .+..++ ..++.+++|++|++..+ ..
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n----~l 186 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS----DL 186 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET----TC
T ss_pred CCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC----Cc
Confidence 8877765 7778888888888876 666765 5777888888887776 466553 45777777877774431 11
Q ss_pred cCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcC
Q 043039 700 YGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLE 779 (949)
Q Consensus 700 ~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 779 (949)
.......+..+++|. .+.+.+.. +.... ...+..+++|+.|++++|.+.+.... ........+.++
T Consensus 187 ~~~~~~~l~~l~~L~----~L~l~~n~-l~~~~---~~~~~~~~~L~~L~L~~n~l~~~~~~------~l~~~~~~~~l~ 252 (353)
T 2z80_A 187 QSYEPKSLKSIQNVS----HLILHMKQ-HILLL---EIFVDVTSSVECLELRDTDLDTFHFS------ELSTGETNSLIK 252 (353)
T ss_dssp CEECTTTTTTCSEEE----EEEEECSC-STTHH---HHHHHHTTTEEEEEEESCBCTTCCCC------------CCCCCC
T ss_pred CccCHHHHhccccCC----eecCCCCc-cccch---hhhhhhcccccEEECCCCcccccccc------ccccccccchhh
Confidence 111112222222222 33333221 22221 11233467788888888776543110 011123345666
Q ss_pred ceEEeccccCC----CCCchhhcccCCcEEEEeccCCCCCCCC-CCCCCCcceeeecCCC
Q 043039 780 SLQISFYEVKA----RFPNWILSLNKLRMLCLSFCKKCEIMPP-LGKLQSLEVLDIWEMH 834 (949)
Q Consensus 780 ~L~L~~~~~~~----~~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~ 834 (949)
.+++.++.+.+ .+|.++..+++|+.|+|++|.+....+. ++.+++|++|+|++|+
T Consensus 253 ~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 253 KFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp EEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 67776665543 2567777888888888888877654444 5778888888887765
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=5.1e-19 Score=191.09 Aligned_cols=272 Identities=15% Similarity=0.137 Sum_probs=178.8
Q ss_pred cCCCCceEEEecCCCCCCcc-hhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccchhhcCCCCCc
Q 043039 561 FNAKKLRSLLIQGYSLQHMP-SFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPETFCELFNLQ 639 (949)
Q Consensus 561 ~~~~~Lr~L~l~~~~l~~l~-~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L~ 639 (949)
..+++|++|++++|.+..++ ..|..+++|++|+|++|. +..++. +..+++|++|++++|.++.+|. .++|+
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~ 102 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV---LYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIE 102 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC---CEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCC
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc---CCcchh-hhhcCCCCEEECcCCccccccC----CCCcC
Confidence 45678999999999888764 578888999999998887 655554 8888999999999988887763 37889
Q ss_pred EEeecCCCCCCccccccccCCCCCeeeCCCcccccCCc-CCCCCCCCcccCccceecCCCccCCCccCcccccccccCCC
Q 043039 640 NLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPK-GMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRG 718 (949)
Q Consensus 640 ~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 718 (949)
+|++++|. +..++. ..+++|++|++++|.++.++. .++.+++|+.|++..+ . +.
T Consensus 103 ~L~l~~n~-l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N----~-----------------l~- 157 (317)
T 3o53_A 103 TLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN----E-----------------ID- 157 (317)
T ss_dssp EEECCSSC-CSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS----C-----------------CC-
T ss_pred EEECCCCc-cCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC----C-----------------CC-
Confidence 99999887 666553 346788899888888887754 5777788888774431 1 11
Q ss_pred ceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhhc
Q 043039 719 SLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWILS 798 (949)
Q Consensus 719 ~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~ 798 (949)
.+. .......+++|+.|++++|.+... .....+++|+.|+|++|.+.+ +|..+..
T Consensus 158 ~~~-------------~~~~~~~l~~L~~L~L~~N~l~~~-----------~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~ 212 (317)
T 3o53_A 158 TVN-------------FAELAASSDTLEHLNLQYNFIYDV-----------KGQVVFAKLKTLDLSSNKLAF-MGPEFQS 212 (317)
T ss_dssp EEE-------------GGGGGGGTTTCCEEECTTSCCCEE-----------ECCCCCTTCCEEECCSSCCCE-ECGGGGG
T ss_pred ccc-------------HHHHhhccCcCCEEECCCCcCccc-----------ccccccccCCEEECCCCcCCc-chhhhcc
Confidence 000 000122456777777777766532 223346778888888887776 6666777
Q ss_pred ccCCcEEEEeccCCCCCCCCCCCCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceeeeccccccccccccccccccc
Q 043039 799 LNKLRMLCLSFCKKCEIMPPLGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEWEFIEENITIM 878 (949)
Q Consensus 799 l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l 878 (949)
+++|+.|+|++|.+....+.+..+++|+.|++++++-. | ...|..+..+
T Consensus 213 l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~-------------------------~------~~~~~~~~~~ 261 (317)
T 3o53_A 213 AAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH-------------------------C------GTLRDFFSKN 261 (317)
T ss_dssp GTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB-------------------------H------HHHHHHHHTC
T ss_pred cCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc-------------------------C------cCHHHHHhcc
Confidence 78888888888776654445667777777777665410 0 0112334467
Q ss_pred cccceeccccCccCcCCCCCCCCCCCcceEEEccCCChhHHhh
Q 043039 879 PQLNSLAIRDCSKLKMLPDQVLRSTTLKKLEINDCPILEKSFK 921 (949)
Q Consensus 879 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~ 921 (949)
++|+.|++.+|+.++..+..-...+.+....-..|..+...+.
T Consensus 262 ~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l~~~~~ 304 (317)
T 3o53_A 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA 304 (317)
T ss_dssp HHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCCTTTHH
T ss_pred ccceEEECCCchhccCCchhccCCCceecccceeeccCChhHH
Confidence 7788888877776664433222223333333345666655443
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=2.1e-18 Score=183.51 Aligned_cols=221 Identities=21% Similarity=0.218 Sum_probs=174.8
Q ss_pred eEEEEEeccCCCCcccccCCCCceEEEecCCCCCCcc-hhhccCCceeEEEeCCccccccccc-cccccCCCCCCeeeec
Q 043039 544 RHSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMP-SFFDQLTCLRALRIGKYGDDAIERI-PNGIEKLIHLRYLKLF 621 (949)
Q Consensus 544 r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~-~~~~~l~~Lr~L~L~~~~~~~~~~l-p~~i~~l~~L~~L~L~ 621 (949)
+.+.........+|..+ .++|+.|++++|.+..++ ..|..+++|++|++++|. +..+ |..+..+++|++|+++
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV---LARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc---cceeCHhhcCCccCCCEEeCC
Confidence 34444455555666544 478999999999999876 468999999999999998 6666 6789999999999999
Q ss_pred ccC-Cccc-chhhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccccCCcC-CCCCCCCcccCccceecCCC
Q 043039 622 FVG-IEEL-PETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKG-MGSLTGLRTLSEFVAVSGGG 698 (949)
Q Consensus 622 ~~~-i~~l-p~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~~~ 698 (949)
+|. +..+ |..+..+++|++|++++|......|..+..+++|++|++++|.++.+|.. ++.+++|+.|++..+ .
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n----~ 164 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN----R 164 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS----C
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC----c
Confidence 997 8888 67899999999999999984444467789999999999999999988764 788999999985431 1
Q ss_pred ccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCc
Q 043039 699 KYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNL 778 (949)
Q Consensus 699 ~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L 778 (949)
+. .+. ...+..+++|+.|++++|.+.+. .+..+..+++|
T Consensus 165 -----------------l~-~~~--------------~~~~~~l~~L~~L~l~~n~l~~~---------~~~~~~~l~~L 203 (285)
T 1ozn_A 165 -----------------IS-SVP--------------ERAFRGLHSLDRLLLHQNRVAHV---------HPHAFRDLGRL 203 (285)
T ss_dssp -----------------CC-EEC--------------TTTTTTCTTCCEEECCSSCCCEE---------CTTTTTTCTTC
T ss_pred -----------------cc-ccC--------------HHHhcCccccCEEECCCCccccc---------CHhHccCcccc
Confidence 11 000 01245678999999999987654 46678889999
Q ss_pred CceEEeccccCCCCCchhhcccCCcEEEEeccCCCC
Q 043039 779 ESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCE 814 (949)
Q Consensus 779 ~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~ 814 (949)
+.|++++|.+.+..+..+..+++|+.|+|++|++..
T Consensus 204 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 999999999998334568899999999999997643
No 64
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=6.1e-21 Score=218.71 Aligned_cols=360 Identities=15% Similarity=0.094 Sum_probs=206.2
Q ss_pred CCceEEEEEeccCCCCc--ccccCCCCceEEEecCCCCC-----CcchhhccCCceeEEEeCCcccccccc-ccccc-cC
Q 043039 541 EKLRHSILVLHYNASFP--VSIFNAKKLRSLLIQGYSLQ-----HMPSFFDQLTCLRALRIGKYGDDAIER-IPNGI-EK 611 (949)
Q Consensus 541 ~~~r~l~l~~~~~~~l~--~~~~~~~~Lr~L~l~~~~l~-----~l~~~~~~l~~Lr~L~L~~~~~~~~~~-lp~~i-~~ 611 (949)
+.++++.+.++.....+ ..+..+++|++|++++|.+. .++..+..+++|++|+|++|. +.. .+..+ ..
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~---l~~~~~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE---LGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC---CHHHHHHHHHHT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc---CChHHHHHHHHH
Confidence 45667777666554321 22556778888888888776 345667777888888888776 332 12222 23
Q ss_pred CC----CCCeeeecccCCc-----ccchhhcCCCCCcEEeecCCCCCCccccccc-----cCCCCCeeeCCCccccc---
Q 043039 612 LI----HLRYLKLFFVGIE-----ELPETFCELFNLQNLDLRRCSKFKRLPQNIG-----KLVNLRHLIFDEDDLDY--- 674 (949)
Q Consensus 612 l~----~L~~L~L~~~~i~-----~lp~~l~~L~~L~~L~L~~~~~l~~lp~~i~-----~L~~L~~L~l~~~~l~~--- 674 (949)
+. +|++|++++|.+. .+|..+..+++|++|++++|......+..+. ..++|++|++++|.++.
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 44 5888888888776 4577777888888888888773222222222 24568888887777663
Q ss_pred --CCcCCCCCCCCcccCccceecCCCccCCCccCcc-ccc-ccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEE
Q 043039 675 --MPKGMGSLTGLRTLSEFVAVSGGGKYGSKACNLD-GLR-HMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLEL 750 (949)
Q Consensus 675 --~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~-~L~-~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l 750 (949)
++..+..+++|++|++..+.... .....+. .+. ....|+ .+.+.++.--..........+..+++|+.|++
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~----~~~~~l~~~l~~~~~~L~-~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 234 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINE----AGVRVLCQGLKDSPCQLE-ALKLESCGVTSDNCRDLCGIVASKASLRELAL 234 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHH----HHHHHHHHHHHHSCCCCC-EEECTTSCCBTTHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHhhCCCCCEEECcCCCcch----HHHHHHHHHHhcCCCCce-EEEccCCCCcHHHHHHHHHHHHhCCCccEEec
Confidence 34455667778887754421100 0000110 000 011333 44444432111111122334567788889988
Q ss_pred EecCCCCcchhhhcHHHHhh-cCCCCCCcCceEEeccccCCC----CCchhhcccCCcEEEEeccCCCCCCC-C-----C
Q 043039 751 EFDKEEEEDEDEVNHQAIIE-ALRPHPNLESLQISFYEVKAR----FPNWILSLNKLRMLCLSFCKKCEIMP-P-----L 819 (949)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~L~~~~~~~~----~p~~~~~l~~L~~L~L~~~~~~~~~~-~-----l 819 (949)
++|.+.+. +...+.. .+..+++|+.|++++|.+... ++..+..+++|+.|+|++|.+.+..+ . .
T Consensus 235 s~n~l~~~-----~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 309 (461)
T 1z7x_W 235 GSNKLGDV-----GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL 309 (461)
T ss_dssp CSSBCHHH-----HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT
T ss_pred cCCcCChH-----HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhc
Confidence 88865432 1122222 234578899999988877653 45666678889999998886543211 1 1
Q ss_pred CCCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceeeeccccccccccc--cccccc-cccccceeccccCccCc---
Q 043039 820 GKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEWEF--IEENIT-IMPQLNSLAIRDCSKLK--- 893 (949)
Q Consensus 820 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~--~~~~~~-~l~~L~~L~l~~c~~l~--- 893 (949)
...++|++|++++|. +...+..........+++|+.|++.++ .+..... ....+. ..++|+.|++++|. ++
T Consensus 310 ~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~ 386 (461)
T 1z7x_W 310 EPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSS 386 (461)
T ss_dssp STTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHH
T ss_pred cCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCC-CChhh
Confidence 234688888888876 211110001111113577888887664 2222111 111111 16688888888884 44
Q ss_pred --CCCCCCCCCCCcceEEEccCCCh
Q 043039 894 --MLPDQVLRSTTLKKLEINDCPIL 916 (949)
Q Consensus 894 --~lp~~~~~l~~L~~L~l~~c~~l 916 (949)
.+|..+..+++|++|++++|+.-
T Consensus 387 ~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 387 CSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHHHHHHHHhCCCccEEECCCCCCC
Confidence 56666667788888888888643
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.74 E-value=2.4e-17 Score=187.02 Aligned_cols=194 Identities=24% Similarity=0.281 Sum_probs=116.6
Q ss_pred ceEEEecCCCCCCcchhhccCCceeEEEeCCcccccccccc-ccccCCCCCCeeeecccCCcccc-hhhcCCCCCcEEee
Q 043039 566 LRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIP-NGIEKLIHLRYLKLFFVGIEELP-ETFCELFNLQNLDL 643 (949)
Q Consensus 566 Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~lp-~~l~~L~~L~~L~L 643 (949)
.+.++..+..++.+|..+. ++++.|+|++|. +..++ ..+.++++|++|+|++|.+..++ ..+.++++|++|+|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQ---IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCC---CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCc---CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 4566666666666665432 456666776666 44443 45666666666666666666554 45666666666666
Q ss_pred cCCCCCCcccc-ccccCCCCCeeeCCCcccccCCcCCCCCCCCcccCccceecCCCccCCCccCcccccccccCCCceEE
Q 043039 644 RRCSKFKRLPQ-NIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKI 722 (949)
Q Consensus 644 ~~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i 722 (949)
++|. +..+|. .+..+++|++|++++|.+..+|..
T Consensus 120 ~~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~-------------------------------------------- 154 (440)
T 3zyj_A 120 FDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSY-------------------------------------------- 154 (440)
T ss_dssp CSSC-CSSCCTTTSCSCSSCCEEECCSCCCCEECTT--------------------------------------------
T ss_pred CCCc-CCeeCHhHhhccccCceeeCCCCcccccCHH--------------------------------------------
Confidence 6665 445543 356666666666666555444321
Q ss_pred ccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhhcccCC
Q 043039 723 RGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWILSLNKL 802 (949)
Q Consensus 723 ~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L 802 (949)
.+..+++|+.|+++.|...... ....|..+++|+.|+|++|.+.. +|. +..+++|
T Consensus 155 ---------------~~~~l~~L~~L~l~~~~~l~~i--------~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L 209 (440)
T 3zyj_A 155 ---------------AFNRIPSLRRLDLGELKRLSYI--------SEGAFEGLSNLRYLNLAMCNLRE-IPN-LTPLIKL 209 (440)
T ss_dssp ---------------TTTTCTTCCEEECCCCTTCCEE--------CTTTTTTCSSCCEEECTTSCCSS-CCC-CTTCSSC
T ss_pred ---------------HhhhCcccCEeCCCCCCCccee--------CcchhhcccccCeecCCCCcCcc-ccc-cCCCccc
Confidence 1223345555555543322110 12246667788888888887776 664 5677778
Q ss_pred cEEEEeccCCCCCCCC-CCCCCCcceeeecCCC
Q 043039 803 RMLCLSFCKKCEIMPP-LGKLQSLEVLDIWEMH 834 (949)
Q Consensus 803 ~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~ 834 (949)
+.|+|++|.+....+. +..+++|+.|+|.++.
T Consensus 210 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 242 (440)
T 3zyj_A 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242 (440)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CEEECCCCccCccChhhhccCccCCEEECCCCc
Confidence 8888887776665443 6777777777776654
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=2.3e-17 Score=187.78 Aligned_cols=241 Identities=22% Similarity=0.269 Sum_probs=136.9
Q ss_pred ceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccc-cccccCCCCCCeeeecccCCcccc-hhhcCCCCCcEEee
Q 043039 566 LRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERI-PNGIEKLIHLRYLKLFFVGIEELP-ETFCELFNLQNLDL 643 (949)
Q Consensus 566 Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~lp-~~l~~L~~L~~L~L 643 (949)
.+.+++.+..++.+|..+. ++|++|+|++|. +..+ |..+.++++|++|+|++|.+..++ ..+.++++|++|+|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENN---IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSC---CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCc---CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 4556666666666665332 466667776666 4444 345666666777777666666554 45666666666666
Q ss_pred cCCCCCCccccc-cccCCCCCeeeCCCcccccCCcCCCCCCCCcccCccceecCCCccCCCccCcccccccccCCCceEE
Q 043039 644 RRCSKFKRLPQN-IGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKI 722 (949)
Q Consensus 644 ~~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i 722 (949)
++|. +..+|.. +..+++|++|++++|.+..+|..
T Consensus 131 ~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------------------------------------------- 165 (452)
T 3zyi_A 131 FDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSY-------------------------------------------- 165 (452)
T ss_dssp CSSC-CSBCCTTTSSSCTTCCEEECCSCCCCEECTT--------------------------------------------
T ss_pred CCCc-CCccChhhhcccCCCCEEECCCCCcceeCHh--------------------------------------------
Confidence 6665 4444433 55566666666666555544321
Q ss_pred ccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhhcccCC
Q 043039 723 RGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWILSLNKL 802 (949)
Q Consensus 723 ~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L 802 (949)
.+..+++|+.|+++.|...... ....+..+++|+.|+|++|.+.. +|. +..+++|
T Consensus 166 ---------------~~~~l~~L~~L~l~~~~~l~~i--------~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L 220 (452)
T 3zyi_A 166 ---------------AFNRVPSLMRLDLGELKKLEYI--------SEGAFEGLFNLKYLNLGMCNIKD-MPN-LTPLVGL 220 (452)
T ss_dssp ---------------TTTTCTTCCEEECCCCTTCCEE--------CTTTTTTCTTCCEEECTTSCCSS-CCC-CTTCTTC
T ss_pred ---------------HHhcCCcccEEeCCCCCCcccc--------ChhhccCCCCCCEEECCCCcccc-ccc-ccccccc
Confidence 1223344455555443222110 12245566777777777777766 553 5566777
Q ss_pred cEEEEeccCCCCCCCC-CCCCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceeeecccccccccccccccccccccc
Q 043039 803 RMLCLSFCKKCEIMPP-LGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEWEFIEENITIMPQL 881 (949)
Q Consensus 803 ~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L 881 (949)
+.|+|++|.+....+. +..+++|+.|+|.+|. +..+ .+..+..+++|
T Consensus 221 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~-------------------------------~~~~~~~l~~L 268 (452)
T 3zyi_A 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLI-------------------------------ERNAFDGLASL 268 (452)
T ss_dssp CEEECTTSCCSEECGGGGTTCTTCCEEECTTSC-CCEE-------------------------------CTTTTTTCTTC
T ss_pred cEEECcCCcCcccCcccccCccCCCEEEeCCCc-CceE-------------------------------CHHHhcCCCCC
Confidence 7777777766655443 6666777777776554 1111 11223456666
Q ss_pred ceeccccCccCcCCCC-CCCCCCCcceEEEccCC
Q 043039 882 NSLAIRDCSKLKMLPD-QVLRSTTLKKLEINDCP 914 (949)
Q Consensus 882 ~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~ 914 (949)
+.|+|++| .++.+|. .+..+++|+.|++++||
T Consensus 269 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 269 VELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 66666666 4445543 34456666666666665
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=2.6e-18 Score=185.09 Aligned_cols=202 Identities=20% Similarity=0.177 Sum_probs=134.5
Q ss_pred cCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCcccccccccccccc-------CCCCCCeeeecccCCc-ccchhh
Q 043039 561 FNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIE-------KLIHLRYLKLFFVGIE-ELPETF 632 (949)
Q Consensus 561 ~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~-------~l~~L~~L~L~~~~i~-~lp~~l 632 (949)
...++|+.|++++|.+ .+|..+... |+.|+|++|.... ..+|..+. ++++|++|++++|.+. .+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~-~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRA-ARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEE-EECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccC-CCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 4456778888888888 777755543 8888888877211 13555554 6889999999999987 678776
Q ss_pred --cCCCCCcEEeecCCCCCCccccccccC-----CCCCeeeCCCcccccCC-cCCCCCCCCcccCccceecCCCccCCCc
Q 043039 633 --CELFNLQNLDLRRCSKFKRLPQNIGKL-----VNLRHLIFDEDDLDYMP-KGMGSLTGLRTLSEFVAVSGGGKYGSKA 704 (949)
Q Consensus 633 --~~L~~L~~L~L~~~~~l~~lp~~i~~L-----~~L~~L~l~~~~l~~~p-~~i~~l~~L~~L~~~~~~~~~~~~~~~~ 704 (949)
..+++|++|++++|. +..+|..++.+ ++|++|++++|.+..++ ..++.+++|++|++..
T Consensus 116 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~------------ 182 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD------------ 182 (312)
T ss_dssp SSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCS------------
T ss_pred HHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCC------------
Confidence 888999999999988 55568777777 88999998888887776 5566666666666432
Q ss_pred cCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcC--CCCCCcCceE
Q 043039 705 CNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEAL--RPHPNLESLQ 782 (949)
Q Consensus 705 ~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~ 782 (949)
|...+. ...+..+ ..+++|+.|+
T Consensus 183 ------------------------------------------------N~l~~~-------~~~~~~~~~~~l~~L~~L~ 207 (312)
T 1wwl_A 183 ------------------------------------------------NPELGE-------RGLISALCPLKFPTLQVLA 207 (312)
T ss_dssp ------------------------------------------------CTTCHH-------HHHHHHSCTTSCTTCCEEE
T ss_pred ------------------------------------------------CCcCcc-------hHHHHHHHhccCCCCCEEE
Confidence 221110 0112222 4556677777
Q ss_pred EeccccCC--CCCch-hhcccCCcEEEEeccCCCCCC--CCCCCCCCcceeeecCCC
Q 043039 783 ISFYEVKA--RFPNW-ILSLNKLRMLCLSFCKKCEIM--PPLGKLQSLEVLDIWEMH 834 (949)
Q Consensus 783 L~~~~~~~--~~p~~-~~~l~~L~~L~L~~~~~~~~~--~~l~~l~~L~~L~L~~~~ 834 (949)
+++|.+.. .++.. +..+++|+.|+|++|.+.... +.+..+++|++|+|++|.
T Consensus 208 L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp CTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred CCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 77766653 12222 235677777888777766644 335567777777776654
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=1.8e-17 Score=189.56 Aligned_cols=128 Identities=14% Similarity=0.145 Sum_probs=61.5
Q ss_pred CCCCCCcCceEEeccccCCCCCchhh-cccCCcEEEEeccCCCCCCCCCCCCCCcceeeecCCCCcEEeCCcccCCCCCC
Q 043039 772 LRPHPNLESLQISFYEVKARFPNWIL-SLNKLRMLCLSFCKKCEIMPPLGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIA 850 (949)
Q Consensus 772 l~~~~~L~~L~L~~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 850 (949)
+..+++|+.|+|++|.+.+..|..+. .+++|+.|+|++|.+... +....+++|++|+|++|. ++.++..+ ..
T Consensus 140 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~-----~~ 212 (487)
T 3oja_A 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNK-LAFMGPEF-----QS 212 (487)
T ss_dssp GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSC-CCEECGGG-----GG
T ss_pred hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cccccCCCCCEEECCCCC-CCCCCHhH-----cC
Confidence 33445566666666665554444444 566666666666655433 333446666666665554 22222211 12
Q ss_pred CCccceeeeccccccccccccccccccccccceeccccCccC-cCCCCCCCCCCCcceEEE
Q 043039 851 FPRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKL-KMLPDQVLRSTTLKKLEI 910 (949)
Q Consensus 851 f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~lp~~~~~l~~L~~L~l 910 (949)
+++|+.|++.+.. +...|..+..+++|+.|++++|+.. ..+|..+..++.|+.+++
T Consensus 213 l~~L~~L~Ls~N~----l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 213 AAGVTWISLRNNK----LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp GTTCSEEECTTSC----CCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred CCCccEEEecCCc----CcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 3344444443311 1112233445666666666666544 233433344444444444
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=1e-17 Score=180.94 Aligned_cols=243 Identities=14% Similarity=0.108 Sum_probs=129.8
Q ss_pred hccCCceeEEEeCCcccccccccc-ccccCCCCCCeeeecccCCcccchhhcCCCCCcEEeecCCCCCCccccccccCCC
Q 043039 583 FDQLTCLRALRIGKYGDDAIERIP-NGIEKLIHLRYLKLFFVGIEELPETFCELFNLQNLDLRRCSKFKRLPQNIGKLVN 661 (949)
Q Consensus 583 ~~~l~~Lr~L~L~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 661 (949)
+..+++|+.|+|++|. +..++ ..++++++|++|++++|.+..+++ +..+++|++|++++|. +..+| ..++
T Consensus 30 ~~~~~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~----~~~~ 100 (317)
T 3o53_A 30 RQSAWNVKELDLSGNP---LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL----VGPS 100 (317)
T ss_dssp HTTGGGCSEEECTTSC---CCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE----ECTT
T ss_pred hccCCCCCEEECcCCc---cCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc----CCCC
Confidence 3445566666666665 44443 456666666666666666655543 5666666666666655 44333 2355
Q ss_pred CCeeeCCCcccccCCcCCCCCCCCcccCccceecCCCccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccC
Q 043039 662 LRHLIFDEDDLDYMPKGMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEK 741 (949)
Q Consensus 662 L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~ 741 (949)
|++|++++|.++.++.. .+
T Consensus 101 L~~L~l~~n~l~~~~~~--~~----------------------------------------------------------- 119 (317)
T 3o53_A 101 IETLHAANNNISRVSCS--RG----------------------------------------------------------- 119 (317)
T ss_dssp CCEEECCSSCCSEEEEC--CC-----------------------------------------------------------
T ss_pred cCEEECCCCccCCcCcc--cc-----------------------------------------------------------
Confidence 66666555555443321 12
Q ss_pred CCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchh-hcccCCcEEEEeccCCCCCCCCCC
Q 043039 742 KKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWI-LSLNKLRMLCLSFCKKCEIMPPLG 820 (949)
Q Consensus 742 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~-~~l~~L~~L~L~~~~~~~~~~~l~ 820 (949)
++|+.|++++|.+... .+..+..+++|+.|++++|.+.+..|..+ ..+++|+.|+|++|.+... +...
T Consensus 120 -~~L~~L~l~~N~l~~~---------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~ 188 (317)
T 3o53_A 120 -QGKKNIYLANNKITML---------RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQV 188 (317)
T ss_dssp -SSCEEEECCSSCCCSG---------GGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCC
T ss_pred -CCCCEEECCCCCCCCc---------cchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cccc
Confidence 2344444444444332 12234455667777777766665334444 2567777777777765443 3334
Q ss_pred CCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceeeeccccccccccccccccccccccceeccccCccC-cCCCCCC
Q 043039 821 KLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKL-KMLPDQV 899 (949)
Q Consensus 821 ~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~lp~~~ 899 (949)
.+++|++|+|++|. +..++..+ ..+++|+.|++.+. .+ ...|..+..+++|+.|++++|+.. ..+|..+
T Consensus 189 ~l~~L~~L~Ls~N~-l~~l~~~~-----~~l~~L~~L~L~~N-~l---~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 189 VFAKLKTLDLSSNK-LAFMGPEF-----QSAAGVTWISLRNN-KL---VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp CCTTCCEEECCSSC-CCEECGGG-----GGGTTCSEEECTTS-CC---CEECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred ccccCCEEECCCCc-CCcchhhh-----cccCcccEEECcCC-cc---cchhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence 46777777776654 33332221 13445555555442 11 122344556677777777777554 3444444
Q ss_pred CCCCCcceEEEccCCCh
Q 043039 900 LRSTTLKKLEINDCPIL 916 (949)
Q Consensus 900 ~~l~~L~~L~l~~c~~l 916 (949)
..+++|+.|++.+|+.+
T Consensus 259 ~~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 259 SKNQRVQTVAKQTVKKL 275 (317)
T ss_dssp HTCHHHHHHHHHHHHHH
T ss_pred hccccceEEECCCchhc
Confidence 55566666666655544
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=1.9e-18 Score=186.22 Aligned_cols=229 Identities=17% Similarity=0.170 Sum_probs=170.2
Q ss_pred CcccccCCCCceEEEecCCCCCC--cchhhc-------cCCceeEEEeCCccccccc-cccccc--cCCCCCCeeeeccc
Q 043039 556 FPVSIFNAKKLRSLLIQGYSLQH--MPSFFD-------QLTCLRALRIGKYGDDAIE-RIPNGI--EKLIHLRYLKLFFV 623 (949)
Q Consensus 556 l~~~~~~~~~Lr~L~l~~~~l~~--l~~~~~-------~l~~Lr~L~L~~~~~~~~~-~lp~~i--~~l~~L~~L~L~~~ 623 (949)
+|..+... |+.|++++|.+.. ++..+. ++++|++|+|++|. +. .+|..+ +.+++|++|++++|
T Consensus 57 ~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~~~l~~L~~L~Ls~N 131 (312)
T 1wwl_A 57 DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE---VTGTAPPPLLEATGPDLNILNLRNV 131 (312)
T ss_dssp CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB---CBSCCCCCSSSCCSCCCSEEEEESC
T ss_pred cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc---ccchhHHHHHHhcCCCccEEEccCC
Confidence 35444433 8888888888753 555444 68999999999998 54 577776 89999999999999
Q ss_pred CCcccchhhcCC-----CCCcEEeecCCCCCCccccccccCCCCCeeeCCCccccc---CCcCC--CCCCCCcccCccce
Q 043039 624 GIEELPETFCEL-----FNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDY---MPKGM--GSLTGLRTLSEFVA 693 (949)
Q Consensus 624 ~i~~lp~~l~~L-----~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~---~p~~i--~~l~~L~~L~~~~~ 693 (949)
.+..+|..++.+ ++|++|++++|......|..++.+++|++|++++|.+.. +|..+ +.+++|++|++..+
T Consensus 132 ~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N 211 (312)
T 1wwl_A 132 SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211 (312)
T ss_dssp BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS
T ss_pred CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC
Confidence 999888888877 899999999998444444789999999999999988653 34444 78888888875431
Q ss_pred ecCCCccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCC
Q 043039 694 VSGGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALR 773 (949)
Q Consensus 694 ~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 773 (949)
. + ..+.......+..+++|+.|++++|.+.+.. ....+.
T Consensus 212 ----~-----------------l------------~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--------~~~~~~ 250 (312)
T 1wwl_A 212 ----G-----------------M------------ETPSGVCSALAAARVQLQGLDLSHNSLRDAA--------GAPSCD 250 (312)
T ss_dssp ----C-----------------C------------CCHHHHHHHHHHTTCCCSEEECTTSCCCSSC--------CCSCCC
T ss_pred ----c-----------------C------------cchHHHHHHHHhcCCCCCEEECCCCcCCccc--------chhhhh
Confidence 1 1 1111111123456788999999988876531 013445
Q ss_pred CCCCcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCCCCCCCCCCCCcceeeecCCC
Q 043039 774 PHPNLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMPPLGKLQSLEVLDIWEMH 834 (949)
Q Consensus 774 ~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~ 834 (949)
.+++|+.|+|++|.+.. +|.++. ++|+.|+|++|.+.+. |.+..+++|++|++++++
T Consensus 251 ~l~~L~~L~Ls~N~l~~-ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLKQ-VPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCTTCCEEECTTSCCSS-CCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCT
T ss_pred hcCCCCEEECCCCccCh-hhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCC
Confidence 57899999999999885 888776 8899999999987766 558889999999998765
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=2.7e-17 Score=188.06 Aligned_cols=215 Identities=16% Similarity=0.152 Sum_probs=164.8
Q ss_pred CCCCceEEEecCCCCCCc-chhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccchhhcCCCCCcE
Q 043039 562 NAKKLRSLLIQGYSLQHM-PSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPETFCELFNLQN 640 (949)
Q Consensus 562 ~~~~Lr~L~l~~~~l~~l-~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L~~ 640 (949)
.+++|++|++++|.+..+ |..|..+++|++|+|++|. +..+++ ++.+++|++|+|++|.++.+|.. ++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV---LYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIET 103 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC---CEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC---CCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCE
Confidence 345899999999999876 4578999999999999998 665555 89999999999999998887743 88999
Q ss_pred EeecCCCCCCccccccccCCCCCeeeCCCcccccC-CcCCCCCCCCcccCccceecCCCccCCCccCcccccccccCCCc
Q 043039 641 LDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYM-PKGMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGS 719 (949)
Q Consensus 641 L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~-p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~ 719 (949)
|++++|. +..+|. ..+++|++|++++|.++.+ |..++.+++|+.|++..| . +. .
T Consensus 104 L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N----~-----------------l~-~ 158 (487)
T 3oja_A 104 LHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN----E-----------------ID-T 158 (487)
T ss_dssp EECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS----C-----------------CC-E
T ss_pred EECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC----C-----------------CC-C
Confidence 9999988 665554 3578899999999999877 456788888888875441 1 11 0
Q ss_pred eEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhhcc
Q 043039 720 LKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWILSL 799 (949)
Q Consensus 720 l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l 799 (949)
.. .......+++|+.|++++|.+.+. ..+..+++|+.|+|++|.+.+ +|..+..+
T Consensus 159 ~~-------------~~~l~~~l~~L~~L~Ls~N~l~~~-----------~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l 213 (487)
T 3oja_A 159 VN-------------FAELAASSDTLEHLNLQYNFIYDV-----------KGQVVFAKLKTLDLSSNKLAF-MGPEFQSA 213 (487)
T ss_dssp EE-------------GGGGGGGTTTCCEEECTTSCCCEE-----------ECCCCCTTCCEEECCSSCCCE-ECGGGGGG
T ss_pred cC-------------hHHHhhhCCcccEEecCCCccccc-----------cccccCCCCCEEECCCCCCCC-CCHhHcCC
Confidence 00 000112467888888888877642 233457889999999998887 77778888
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCcceeeecCCC
Q 043039 800 NKLRMLCLSFCKKCEIMPPLGKLQSLEVLDIWEMH 834 (949)
Q Consensus 800 ~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~ 834 (949)
++|+.|+|++|.+...++.++.+++|+.|++++|+
T Consensus 214 ~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 214 AGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp TTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred CCccEEEecCCcCcccchhhccCCCCCEEEcCCCC
Confidence 99999999999887655568888888888887766
No 72
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.70 E-value=1.2e-18 Score=206.57 Aligned_cols=347 Identities=16% Similarity=0.099 Sum_probs=184.8
Q ss_pred ceEEEEEeccCC---CCcccccCCCCceEEEecCCCCCC-----cchhhccCCceeEEEeCCcccc--ccccccccccCC
Q 043039 543 LRHSILVLHYNA---SFPVSIFNAKKLRSLLIQGYSLQH-----MPSFFDQLTCLRALRIGKYGDD--AIERIPNGIEKL 612 (949)
Q Consensus 543 ~r~l~l~~~~~~---~l~~~~~~~~~Lr~L~l~~~~l~~-----l~~~~~~l~~Lr~L~L~~~~~~--~~~~lp~~i~~l 612 (949)
++.+.+..+... .++.....+++|++|++++|.+.. ++..+..+++|+.|++++|... ....++..+.++
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 666666554311 112222366777777777776532 3344566777777777776621 012344455667
Q ss_pred CCCCeeeecccCCcccchhhcCCCCCcEEeecCCCCC---CccccccccCCCCCeeeCCCcccccCCcCCCCCCCCcccC
Q 043039 613 IHLRYLKLFFVGIEELPETFCELFNLQNLDLRRCSKF---KRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLS 689 (949)
Q Consensus 613 ~~L~~L~L~~~~i~~lp~~l~~L~~L~~L~L~~~~~l---~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~ 689 (949)
++|++|++++|.+..+|..+..+++|+.|+++.+... ...+..+..+++|+.|++..+....+|..+..+++|+.|+
T Consensus 220 ~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~ 299 (592)
T 3ogk_B 220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLD 299 (592)
T ss_dssp TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEE
T ss_pred CCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEe
Confidence 7777777777777777777777777777777753322 2334456666777777765555556666666677777776
Q ss_pred ccceecCCCccCCCccCc-ccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEe-----------cCCCC
Q 043039 690 EFVAVSGGGKYGSKACNL-DGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEF-----------DKEEE 757 (949)
Q Consensus 690 ~~~~~~~~~~~~~~~~~l-~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~-----------~~~~~ 757 (949)
+..+. .. ...+ .-+..+++|+ .+.+.+ .+ ...........+++|++|+++. +....
T Consensus 300 Ls~~~-l~------~~~~~~~~~~~~~L~-~L~L~~--~~--~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~ 367 (592)
T 3ogk_B 300 LLYAL-LE------TEDHCTLIQKCPNLE-VLETRN--VI--GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ 367 (592)
T ss_dssp ETTCC-CC------HHHHHHHHTTCTTCC-EEEEEG--GG--HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH
T ss_pred cCCCc-CC------HHHHHHHHHhCcCCC-EEeccC--cc--CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCH
Confidence 54321 00 0001 0012223333 333331 11 1111222335567777777773 22221
Q ss_pred cchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhhc-ccCCcEEEEeccC---CCCCCC------C-CCCCCCcc
Q 043039 758 EDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWILS-LNKLRMLCLSFCK---KCEIMP------P-LGKLQSLE 826 (949)
Q Consensus 758 ~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~-l~~L~~L~L~~~~---~~~~~~------~-l~~l~~L~ 826 (949)
..+......+++|++|++..+.+++..+..+.. +++|+.|++++|. .....| . +..+++|+
T Consensus 368 --------~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~ 439 (592)
T 3ogk_B 368 --------RGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLR 439 (592)
T ss_dssp --------HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCC
T ss_pred --------HHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCC
Confidence 112222234567777777666665544444543 7778888776432 222211 1 33477778
Q ss_pred eeeecCCCCcEEeCCcccCCCCCCCCccceeeeccccccccccccccccccccccceeccccCccCc--CCCCCCCCCCC
Q 043039 827 VLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLK--MLPDQVLRSTT 904 (949)
Q Consensus 827 ~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~--~lp~~~~~l~~ 904 (949)
+|+++.|... +...........+|+|+.|.+.++. +.+.. .+..+..+++|++|+|++|+ ++ .++.....+++
T Consensus 440 ~L~L~~~~~~--l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~-~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~ 514 (592)
T 3ogk_B 440 RFAFYLRQGG--LTDLGLSYIGQYSPNVRWMLLGYVG-ESDEG-LMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPS 514 (592)
T ss_dssp EEEEECCGGG--CCHHHHHHHHHSCTTCCEEEECSCC-SSHHH-HHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSS
T ss_pred EEEEecCCCC--ccHHHHHHHHHhCccceEeeccCCC-CCHHH-HHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCc
Confidence 8877655420 1111000011146777777776543 22211 11223457778888888876 33 13333345677
Q ss_pred cceEEEccCC
Q 043039 905 LKKLEINDCP 914 (949)
Q Consensus 905 L~~L~l~~c~ 914 (949)
|+.|++++|+
T Consensus 515 L~~L~ls~n~ 524 (592)
T 3ogk_B 515 LRYLWVQGYR 524 (592)
T ss_dssp CCEEEEESCB
T ss_pred cCeeECcCCc
Confidence 8888888877
No 73
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.69 E-value=1.6e-19 Score=207.00 Aligned_cols=360 Identities=16% Similarity=0.118 Sum_probs=231.0
Q ss_pred cCCceEEEEEeccCC-----CCcccccCCCCceEEEecCCCCCC--cchhhccCC----ceeEEEeCCcccccc--cccc
Q 043039 540 YEKLRHSILVLHYNA-----SFPVSIFNAKKLRSLLIQGYSLQH--MPSFFDQLT----CLRALRIGKYGDDAI--ERIP 606 (949)
Q Consensus 540 ~~~~r~l~l~~~~~~-----~l~~~~~~~~~Lr~L~l~~~~l~~--l~~~~~~l~----~Lr~L~L~~~~~~~~--~~lp 606 (949)
+++++.+.+.++... .++..+..+++|++|++++|.+.. +...+..++ +|++|+|++|..... ..+|
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 367889999988765 345667788999999999998764 233344555 799999999983111 2568
Q ss_pred ccccCCCCCCeeeecccCCccc-chhhc-----CCCCCcEEeecCCCCCC----ccccccccCCCCCeeeCCCcccccC-
Q 043039 607 NGIEKLIHLRYLKLFFVGIEEL-PETFC-----ELFNLQNLDLRRCSKFK----RLPQNIGKLVNLRHLIFDEDDLDYM- 675 (949)
Q Consensus 607 ~~i~~l~~L~~L~L~~~~i~~l-p~~l~-----~L~~L~~L~L~~~~~l~----~lp~~i~~L~~L~~L~l~~~~l~~~- 675 (949)
..+..+++|++|++++|.+... +..+. .+++|++|++++|.... .++..+..+++|++|++++|.+...
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 186 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 186 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence 8899999999999999998743 22222 35689999999997333 3566778899999999999887632
Q ss_pred ----CcCCC-CCCCCcccCccceecCCCccCCCccCc-ccccccccCCCceEEccCCCCCChhhhh--hhcccCCCCCCe
Q 043039 676 ----PKGMG-SLTGLRTLSEFVAVSGGGKYGSKACNL-DGLRHMNHLRGSLKIRGLGNVTDVDAAK--NAELEKKKNLIS 747 (949)
Q Consensus 676 ----p~~i~-~l~~L~~L~~~~~~~~~~~~~~~~~~l-~~L~~L~~L~~~l~i~~~~~l~~~~~~~--~~~l~~~~~L~~ 747 (949)
..++. .+++|++|++..+ .........+ ..+..++.|+ .+.+.+.. +....... ......+++|+.
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n----~l~~~~~~~l~~~l~~~~~L~-~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~ 260 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESC----GVTSDNCRDLCGIVASKASLR-ELALGSNK-LGDVGMAELCPGLLHPSSRLRT 260 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTS----CCBTTHHHHHHHHHHHCTTCC-EEECCSSB-CHHHHHHHHHHHHTSTTCCCCE
T ss_pred HHHHHHHHhcCCCCceEEEccCC----CCcHHHHHHHHHHHHhCCCcc-EEeccCCc-CChHHHHHHHHHHhcCCCCceE
Confidence 11221 3568999986543 2111100001 1122334444 55554431 22111111 122346899999
Q ss_pred EEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhhc-----ccCCcEEEEeccCCCCC----CC-
Q 043039 748 LELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWILS-----LNKLRMLCLSFCKKCEI----MP- 817 (949)
Q Consensus 748 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~-----l~~L~~L~L~~~~~~~~----~~- 817 (949)
|++++|.+... +...++..+..+++|+.|++++|.+....+..+.. .++|+.|+|++|.+... ++
T Consensus 261 L~L~~n~l~~~-----~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 335 (461)
T 1z7x_W 261 LWIWECGITAK-----GCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS 335 (461)
T ss_dssp EECTTSCCCHH-----HHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred EECcCCCCCHH-----HHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH
Confidence 99999977642 23335666777899999999999876532333332 36999999999986653 22
Q ss_pred CCCCCCCcceeeecCCCCcEEeCCcccCC-CCCCCCccceeeecccccccc--ccccccccccccccceeccccCccCc-
Q 043039 818 PLGKLQSLEVLDIWEMHGIKRVGDEVLGI-EIIAFPRLKKFTLWSLDGWEE--WEFIEENITIMPQLNSLAIRDCSKLK- 893 (949)
Q Consensus 818 ~l~~l~~L~~L~L~~~~~l~~~~~~~~~~-~~~~f~~L~~L~l~~l~~l~~--~~~~~~~~~~l~~L~~L~l~~c~~l~- 893 (949)
.+..+++|++|+|++|. +...+...... .....++|+.|++.++. +.. ....|..+..+++|++|++++|+.-.
T Consensus 336 ~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 336 VLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 25677999999999885 32221111100 01126789999998763 321 11334556679999999999995332
Q ss_pred -------CCCCCCCCCCCcceEEEccCCC
Q 043039 894 -------MLPDQVLRSTTLKKLEINDCPI 915 (949)
Q Consensus 894 -------~lp~~~~~l~~L~~L~l~~c~~ 915 (949)
.+|. +..+|+.|++.++..
T Consensus 414 ~~~~l~~~l~~---~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 414 GILQLVESVRQ---PGCLLEQLVLYDIYW 439 (461)
T ss_dssp HHHHHHHHHTS---TTCCCCEEECTTCCC
T ss_pred HHHHHHHHhcc---CCcchhheeeccccc
Confidence 1332 234677887777654
No 74
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.68 E-value=4.5e-18 Score=201.54 Aligned_cols=351 Identities=12% Similarity=0.081 Sum_probs=181.2
Q ss_pred cCCceEEEEEeccCCCC-cccccC-CCC-ceEEEecCCCC-C--CcchhhccCCceeEEEeCCccccc--cccccccccC
Q 043039 540 YEKLRHSILVLHYNASF-PVSIFN-AKK-LRSLLIQGYSL-Q--HMPSFFDQLTCLRALRIGKYGDDA--IERIPNGIEK 611 (949)
Q Consensus 540 ~~~~r~l~l~~~~~~~l-~~~~~~-~~~-Lr~L~l~~~~l-~--~l~~~~~~l~~Lr~L~L~~~~~~~--~~~lp~~i~~ 611 (949)
++.++.+.+..+..... +..+.. +++ |++|++++|.. . .++.....+++|++|+|++|.... ...++.....
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 190 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH 190 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence 34555555555433210 111222 223 66666655541 1 122333456666666666664100 0002233445
Q ss_pred CCCCCeeeecccCCc-----ccchhhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCccc----ccCCcCCCCC
Q 043039 612 LIHLRYLKLFFVGIE-----ELPETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDL----DYMPKGMGSL 682 (949)
Q Consensus 612 l~~L~~L~L~~~~i~-----~lp~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l----~~~p~~i~~l 682 (949)
+++|++|++++|.+. .++..+..+++|++|++++|. +..+|..+..+++|++|+++.+.. ...+..+..+
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 566666666666654 334444556666666666655 445666666666666666543211 1222345555
Q ss_pred CCCcccCccceecCCCccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhh
Q 043039 683 TGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDE 762 (949)
Q Consensus 683 ~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 762 (949)
++|+.|.+.. ..... ....+. .+++|+ .+.+.++. +.. ......+..+++|+.|+++ +...+
T Consensus 270 ~~L~~L~l~~-~~~~~----l~~~~~---~~~~L~-~L~Ls~~~-l~~--~~~~~~~~~~~~L~~L~L~-~~~~~----- 331 (592)
T 3ogk_B 270 RKLCRLGLSY-MGPNE----MPILFP---FAAQIR-KLDLLYAL-LET--EDHCTLIQKCPNLEVLETR-NVIGD----- 331 (592)
T ss_dssp TTCCEEEETT-CCTTT----GGGGGG---GGGGCC-EEEETTCC-CCH--HHHHHHHTTCTTCCEEEEE-GGGHH-----
T ss_pred ccccccCccc-cchhH----HHHHHh---hcCCCc-EEecCCCc-CCH--HHHHHHHHhCcCCCEEecc-CccCH-----
Confidence 5666655332 11000 011112 223333 55565544 221 1122335778888888887 32211
Q ss_pred hcHHHHhhcCCCCCCcCceEEec----------c-ccCCC-CCchhhcccCCcEEEEeccCCCCCC-CCCCC-CCCccee
Q 043039 763 VNHQAIIEALRPHPNLESLQISF----------Y-EVKAR-FPNWILSLNKLRMLCLSFCKKCEIM-PPLGK-LQSLEVL 828 (949)
Q Consensus 763 ~~~~~~~~~l~~~~~L~~L~L~~----------~-~~~~~-~p~~~~~l~~L~~L~L~~~~~~~~~-~~l~~-l~~L~~L 828 (949)
..+......+++|++|+|++ | .++.. ++.....+++|++|++..+.+.... ..++. +++|++|
T Consensus 332 ---~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L 408 (592)
T 3ogk_B 332 ---RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDF 408 (592)
T ss_dssp ---HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEE
T ss_pred ---HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEE
Confidence 12233334567899999983 3 33221 2223346889999999666554422 22333 8899999
Q ss_pred eecCC---CCcEEeCCc-ccCCCCCCCCccceeeeccccc-cccccccccccccccccceeccccCccCc--CCCCCCCC
Q 043039 829 DIWEM---HGIKRVGDE-VLGIEIIAFPRLKKFTLWSLDG-WEEWEFIEENITIMPQLNSLAIRDCSKLK--MLPDQVLR 901 (949)
Q Consensus 829 ~L~~~---~~l~~~~~~-~~~~~~~~f~~L~~L~l~~l~~-l~~~~~~~~~~~~l~~L~~L~l~~c~~l~--~lp~~~~~ 901 (949)
++.+| +.++..+.+ ........+++|+.|.+.+|.+ +...... .....+++|+.|+|++|. ++ .++..+..
T Consensus 409 ~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~-~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~ 486 (592)
T 3ogk_B 409 RLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS-YIGQYSPNVRWMLLGYVG-ESDEGLMEFSRG 486 (592)
T ss_dssp EEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH-HHHHSCTTCCEEEECSCC-SSHHHHHHHHTC
T ss_pred EEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH-HHHHhCccceEeeccCCC-CCHHHHHHHHhc
Confidence 99753 333221110 0000012588999999976554 2221111 112248999999999985 43 34444467
Q ss_pred CCCcceEEEccCC
Q 043039 902 STTLKKLEINDCP 914 (949)
Q Consensus 902 l~~L~~L~l~~c~ 914 (949)
+++|++|+|++|+
T Consensus 487 ~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 487 CPNLQKLEMRGCC 499 (592)
T ss_dssp CTTCCEEEEESCC
T ss_pred CcccCeeeccCCC
Confidence 8899999999999
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=3.6e-16 Score=165.88 Aligned_cols=125 Identities=18% Similarity=0.116 Sum_probs=99.9
Q ss_pred ccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccc-cccccCCCCCCeeeecccCCcccchhhcCCCCC
Q 043039 560 IFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERI-PNGIEKLIHLRYLKLFFVGIEELPETFCELFNL 638 (949)
Q Consensus 560 ~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L 638 (949)
+.+++++++++++++.++.+|..+. +.++.|+|++|. +..+ |..+..+++|++|+|++|.++.+|.. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENL---LYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSC---CSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTC
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCc---CCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcC
Confidence 4567888899999888888876543 578899999888 5555 45688889999999999988888765 788889
Q ss_pred cEEeecCCCCCCccccccccCCCCCeeeCCCcccccCCc-CCCCCCCCcccCcc
Q 043039 639 QNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPK-GMGSLTGLRTLSEF 691 (949)
Q Consensus 639 ~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~-~i~~l~~L~~L~~~ 691 (949)
++|++++|. +..+|..+..+++|++|++++|.++.+|. .+..+++|+.|++.
T Consensus 80 ~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~ 132 (290)
T 1p9a_G 80 GTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132 (290)
T ss_dssp CEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECT
T ss_pred CEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECC
Confidence 999999887 77888888888899999988888887764 46777777777643
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=9.5e-16 Score=161.27 Aligned_cols=195 Identities=24% Similarity=0.291 Sum_probs=130.6
Q ss_pred CceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccc-cccCCCCCCeeeecccCCcccchh-hcCCCCCcEEe
Q 043039 565 KLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPN-GIEKLIHLRYLKLFFVGIEELPET-FCELFNLQNLD 642 (949)
Q Consensus 565 ~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp~~-l~~L~~L~~L~ 642 (949)
.+++++++++.++.+|..+. +.|+.|+|++|. +..+|. .+.++++|++|++++|.+..+|.. +..+++|++|+
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNK---LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSC---CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCC---CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 46778888888877776443 568888888887 666654 577888888888888888877765 36788888888
Q ss_pred ecCCCCCCcccc-ccccCCCCCeeeCCCcccccCCcC-CCCCCCCcccCccceecCCCccCCCccCcccccccccCCCce
Q 043039 643 LRRCSKFKRLPQ-NIGKLVNLRHLIFDEDDLDYMPKG-MGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSL 720 (949)
Q Consensus 643 L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l 720 (949)
+++|. +..+|. .+..+++|++|++++|.++.+|.. ++.+++|++|+
T Consensus 92 l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~------------------------------- 139 (270)
T 2o6q_A 92 VTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS------------------------------- 139 (270)
T ss_dssp CCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE-------------------------------
T ss_pred CCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEE-------------------------------
Confidence 88877 555554 457778888888777777666532 45555555554
Q ss_pred EEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhhccc
Q 043039 721 KIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWILSLN 800 (949)
Q Consensus 721 ~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~ 800 (949)
+++|.+... ....+..+++|+.|+|++|.+....+..+..++
T Consensus 140 -----------------------------Ls~n~l~~~---------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 181 (270)
T 2o6q_A 140 -----------------------------LGYNELQSL---------PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT 181 (270)
T ss_dssp -----------------------------CCSSCCCCC---------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred -----------------------------CCCCcCCcc---------CHhHccCCcccceeEecCCcCcEeChhHhccCC
Confidence 333322221 112244566777777777776662334466777
Q ss_pred CCcEEEEeccCCCCCCCC-CCCCCCcceeeecCCC
Q 043039 801 KLRMLCLSFCKKCEIMPP-LGKLQSLEVLDIWEMH 834 (949)
Q Consensus 801 ~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~ 834 (949)
+|+.|+|++|.+....+. +..+++|+.|+|.+++
T Consensus 182 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 888888888776654443 6677888888887665
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.67 E-value=2.6e-16 Score=168.80 Aligned_cols=120 Identities=19% Similarity=0.298 Sum_probs=82.6
Q ss_pred cCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccchhhcCCCCCcE
Q 043039 561 FNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPETFCELFNLQN 640 (949)
Q Consensus 561 ~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L~~ 640 (949)
..+++|++|++++|.+..++. +..+++|++|++++|. +..++. +..+++|++|++++|.+..+| .+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~-~~~l~~L~~L~L~~n~---i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQ---ITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSC---CCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccCchh-hhccCCCCEEEccCCc---CCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCE
Confidence 346677777777777777663 6677777777777776 666665 777777777777777777665 5677777777
Q ss_pred EeecCCCCCCccccccccCCCCCeeeCCCcccccCCcCCCCCCCCcccC
Q 043039 641 LDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLS 689 (949)
Q Consensus 641 L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~ 689 (949)
|++++|. +..+|. +..+++|++|++++|.++.++. ++.+++|+.|+
T Consensus 112 L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 157 (308)
T 1h6u_A 112 LDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLS 157 (308)
T ss_dssp EECTTSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEE
T ss_pred EECCCCC-CCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEE
Confidence 7777776 555654 6777777777777776666553 55555555554
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.65 E-value=4.2e-16 Score=164.79 Aligned_cols=200 Identities=23% Similarity=0.254 Sum_probs=116.9
Q ss_pred CCceEEEecCCCCCCcch-hhccCCceeEEEeCCccccccccccc-cccCCCCCCeeeecccCCcccc-hhhcCCCCCcE
Q 043039 564 KKLRSLLIQGYSLQHMPS-FFDQLTCLRALRIGKYGDDAIERIPN-GIEKLIHLRYLKLFFVGIEELP-ETFCELFNLQN 640 (949)
Q Consensus 564 ~~Lr~L~l~~~~l~~l~~-~~~~l~~Lr~L~L~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp-~~l~~L~~L~~ 640 (949)
++|++|++++|.+..++. .|.++++|++|++++|. +..++. .+.++++|++|++++|.+..++ ..+.++++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC---CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCc---CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccE
Confidence 457777777777666543 56667777777777766 555443 4666777777777777766654 45666777777
Q ss_pred EeecCCCCCCcccc-ccccCCCCCeeeCCCccccc--CCcCCCCCCCCcccCccceecCCCccCCCccCcccccccccCC
Q 043039 641 LDLRRCSKFKRLPQ-NIGKLVNLRHLIFDEDDLDY--MPKGMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLR 717 (949)
Q Consensus 641 L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~--~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 717 (949)
|++++|. +..++. .++.+++|++|++++|.+.. +|..++.+++|++|+
T Consensus 105 L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~---------------------------- 155 (276)
T 2z62_A 105 LVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD---------------------------- 155 (276)
T ss_dssp EECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE----------------------------
T ss_pred EECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEE----------------------------
Confidence 7777666 444433 46666677777766666654 455555555555555
Q ss_pred CceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcC-ceEEeccccCCCCCchh
Q 043039 718 GSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLE-SLQISFYEVKARFPNWI 796 (949)
Q Consensus 718 ~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~L~~~~~~~~~p~~~ 796 (949)
+++|.+...... .+..+..++.|. .|++++|.+.. +|...
T Consensus 156 --------------------------------Ls~N~l~~~~~~------~~~~l~~L~~l~l~L~ls~n~l~~-~~~~~ 196 (276)
T 2z62_A 156 --------------------------------LSSNKIQSIYCT------DLRVLHQMPLLNLSLDLSLNPMNF-IQPGA 196 (276)
T ss_dssp --------------------------------CCSSCCCEECGG------GGHHHHTCTTCCEEEECCSSCCCE-ECTTS
T ss_pred --------------------------------CCCCCCCcCCHH------HhhhhhhccccceeeecCCCcccc-cCccc
Confidence 333332221000 000111122222 56666666665 55444
Q ss_pred hcccCCcEEEEeccCCCCCCCC-CCCCCCcceeeecCCC
Q 043039 797 LSLNKLRMLCLSFCKKCEIMPP-LGKLQSLEVLDIWEMH 834 (949)
Q Consensus 797 ~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~ 834 (949)
....+|+.|+|++|.+....+. ++.+++|+.|+|++++
T Consensus 197 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 197 FKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp SCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred cCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 4455777777777776655444 5677777777776655
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=1.2e-15 Score=161.90 Aligned_cols=144 Identities=19% Similarity=0.182 Sum_probs=121.8
Q ss_pred cCCceEEEEEeccCCCCcccccCCCCceEEEecCCCCCCc-chhhccCCceeEEEeCCccccccccccccccCCCCCCee
Q 043039 540 YEKLRHSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHM-PSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYL 618 (949)
Q Consensus 540 ~~~~r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l-~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L 618 (949)
...++.+.+..+....+|..+. ++++.|++++|.+..+ +..|..+++|+.|+|++|. +..++.. +.+++|++|
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE---LTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC---CCEEECC-SCCTTCCEE
T ss_pred cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc---cCcccCC-CCCCcCCEE
Confidence 3567788887777777777664 7899999999999877 4578999999999999998 7777764 899999999
Q ss_pred eecccCCcccchhhcCCCCCcEEeecCCCCCCccc-cccccCCCCCeeeCCCcccccCCcC-CCCCCCCcccCc
Q 043039 619 KLFFVGIEELPETFCELFNLQNLDLRRCSKFKRLP-QNIGKLVNLRHLIFDEDDLDYMPKG-MGSLTGLRTLSE 690 (949)
Q Consensus 619 ~L~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~~p~~-i~~l~~L~~L~~ 690 (949)
++++|.+..+|..+..+++|++|++++|. +..+| ..+..+++|++|++++|.++.+|.+ +..+++|+.|++
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence 99999999999999999999999999998 66666 5689999999999999999888754 455666666653
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.65 E-value=1e-15 Score=161.84 Aligned_cols=202 Identities=18% Similarity=0.209 Sum_probs=156.1
Q ss_pred CCceEEEEEeccCCCCcc-cccCCCCceEEEecCCCCCCcch-hhccCCceeEEEeCCcccccccccc-ccccCCCCCCe
Q 043039 541 EKLRHSILVLHYNASFPV-SIFNAKKLRSLLIQGYSLQHMPS-FFDQLTCLRALRIGKYGDDAIERIP-NGIEKLIHLRY 617 (949)
Q Consensus 541 ~~~r~l~l~~~~~~~l~~-~~~~~~~Lr~L~l~~~~l~~l~~-~~~~l~~Lr~L~L~~~~~~~~~~lp-~~i~~l~~L~~ 617 (949)
..++.+.+.++.+..++. .+.++++|++|++++|.+..++. .|..+++|++|++++|. +..++ ..+.++++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP---IQSLALGAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC---CCEECTTTTTTCTTCCE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc---cCccChhhhcCCccccE
Confidence 679999999888876654 78889999999999999988754 68999999999999998 66665 67999999999
Q ss_pred eeecccCCcccch-hhcCCCCCcEEeecCCCCCCc--cccccccCCCCCeeeCCCcccccCCc-CCCCCCCCcccCccce
Q 043039 618 LKLFFVGIEELPE-TFCELFNLQNLDLRRCSKFKR--LPQNIGKLVNLRHLIFDEDDLDYMPK-GMGSLTGLRTLSEFVA 693 (949)
Q Consensus 618 L~L~~~~i~~lp~-~l~~L~~L~~L~L~~~~~l~~--lp~~i~~L~~L~~L~l~~~~l~~~p~-~i~~l~~L~~L~~~~~ 693 (949)
|++++|.+..++. .+..+++|++|++++|. +.. +|..+..+++|++|++++|.++.++. .+..+++|+.|.+
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l--- 180 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL--- 180 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCE---
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccce---
Confidence 9999999998865 68999999999999998 544 78999999999999999998887653 3333333332221
Q ss_pred ecCCCccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCC
Q 043039 694 VSGGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALR 773 (949)
Q Consensus 694 ~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 773 (949)
.|++++|.+... +....
T Consensus 181 -----------------------------------------------------~L~ls~n~l~~~----------~~~~~ 197 (276)
T 2z62_A 181 -----------------------------------------------------SLDLSLNPMNFI----------QPGAF 197 (276)
T ss_dssp -----------------------------------------------------EEECCSSCCCEE----------CTTSS
T ss_pred -----------------------------------------------------eeecCCCccccc----------Ccccc
Confidence 233444433321 11222
Q ss_pred CCCCcCceEEeccccCCCCCch-hhcccCCcEEEEeccCCC
Q 043039 774 PHPNLESLQISFYEVKARFPNW-ILSLNKLRMLCLSFCKKC 813 (949)
Q Consensus 774 ~~~~L~~L~L~~~~~~~~~p~~-~~~l~~L~~L~L~~~~~~ 813 (949)
...+|+.|++++|.+.+ +|.. +..+++|+.|+|++|++.
T Consensus 198 ~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 198 KEIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CSCCEEEEECCSSCCSC-CCTTTTTTCCSCCEEECCSSCBC
T ss_pred CCCcccEEECCCCceee-cCHhHhcccccccEEEccCCccc
Confidence 23478899999888887 5554 578899999999998765
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.64 E-value=9.9e-16 Score=161.26 Aligned_cols=109 Identities=25% Similarity=0.418 Sum_probs=59.5
Q ss_pred CCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccchh-hcCCCCCcE
Q 043039 562 NAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPET-FCELFNLQN 640 (949)
Q Consensus 562 ~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-l~~L~~L~~ 640 (949)
.+++|+.|.+++|.+..++. +..+++|++|++++|. +..++ .++.+++|++|++++|.++.+|.. +..+++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~---l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNK---LHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSC---CCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccceeeeeeCCCCcccccc-cccCCCCcEEECCCCC---CCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 45556666666665555543 5556666666666655 44433 455666666666666666555433 455566666
Q ss_pred EeecCCCCCCcccc-ccccCCCCCeeeCCCcccccCC
Q 043039 641 LDLRRCSKFKRLPQ-NIGKLVNLRHLIFDEDDLDYMP 676 (949)
Q Consensus 641 L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~~p 676 (949)
|++++|. +..+|. .++.+++|++|++++|.++.+|
T Consensus 114 L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 149 (272)
T 3rfs_A 114 LVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLP 149 (272)
T ss_dssp EECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred EECCCCc-CCccCHHHhccCCCCCEEECCCCccCccC
Confidence 6666655 333332 2455555555555555544443
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.63 E-value=3.1e-15 Score=157.34 Aligned_cols=143 Identities=29% Similarity=0.405 Sum_probs=117.7
Q ss_pred CceEEEEEeccCCCCcccccCCCCceEEEecCCCCCCcch-hhccCCceeEEEeCCcccccccccccc-ccCCCCCCeee
Q 043039 542 KLRHSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMPS-FFDQLTCLRALRIGKYGDDAIERIPNG-IEKLIHLRYLK 619 (949)
Q Consensus 542 ~~r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~~-~~~~l~~Lr~L~L~~~~~~~~~~lp~~-i~~l~~L~~L~ 619 (949)
..+.+.+.++....+|..+. ++++.|++++|.+..++. .|..+++|++|++++|. +..+|.. +.++++|++|+
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK---LQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC---CSCCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc---cCeeChhhhcCCCCCCEEE
Confidence 45566666666777776553 689999999999998865 68999999999999998 7788765 58899999999
Q ss_pred ecccCCcccch-hhcCCCCCcEEeecCCCCCCccc-cccccCCCCCeeeCCCcccccCCcC-CCCCCCCcccCc
Q 043039 620 LFFVGIEELPE-TFCELFNLQNLDLRRCSKFKRLP-QNIGKLVNLRHLIFDEDDLDYMPKG-MGSLTGLRTLSE 690 (949)
Q Consensus 620 L~~~~i~~lp~-~l~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~~p~~-i~~l~~L~~L~~ 690 (949)
+++|.+..+|. .+..+++|++|++++|. +..+| ..+..+++|++|++++|.++.+|.. ++.+++|+.|++
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL 164 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEe
Confidence 99999998875 46889999999999998 55555 4578999999999999999888765 567777777764
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.63 E-value=1.4e-15 Score=163.02 Aligned_cols=143 Identities=17% Similarity=0.216 Sum_probs=124.6
Q ss_pred ccCCceEEEEEeccCCCCcccccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCee
Q 043039 539 CYEKLRHSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYL 618 (949)
Q Consensus 539 ~~~~~r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L 618 (949)
.+.+++.+.+.++....++ .+..+++|++|++++|.+..++. +..+++|++|++++|. +..++ .+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~---l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP---LKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC---CSCCG-GGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc---CCCch-hhcCCCCCCEE
Confidence 3477889998888877765 67889999999999999999888 9999999999999998 77776 59999999999
Q ss_pred eecccCCcccchhhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccccCCcCCCCCCCCcccCcc
Q 043039 619 KLFFVGIEELPETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEF 691 (949)
Q Consensus 619 ~L~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~ 691 (949)
++++|.+..+|. +..+++|++|++++|. +..+|. +..+++|++|++++|.++.++. +..+++|+.|++.
T Consensus 113 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 113 DLTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKAD 181 (308)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred ECCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECC
Confidence 999999999875 8999999999999998 777775 9999999999999999888765 7777777777643
No 84
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.63 E-value=6.9e-15 Score=165.45 Aligned_cols=300 Identities=10% Similarity=0.035 Sum_probs=180.8
Q ss_pred cCccccchhHHHHHHHHH-ccCCCCCCCCeEEEEE--EecCCChHHHHHHHHHcCcccc---ccc-ceEEEEEeCCCCCH
Q 043039 173 VSEVCGRNEEKNALKGKL-LSETAEQPNAIQVISL--VGMGGIGKTTLAQLAYNDADVS---NNF-NVMIWVCVSDPFDV 245 (949)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L-~~~~~~~~~~~~vi~I--~G~~GiGKTtLa~~v~~~~~~~---~~f-~~~~wv~~~~~~~~ 245 (949)
+..++||+++++++.+++ .....+.....+.+.| +|++|+||||||+.+++..... ..+ ..++|+++....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367999999999999998 4321100013456667 9999999999999998753221 012 24678888777888
Q ss_pred HHHHHHHHHhcCCCCCC-CcchHHHHHHHHhhhC--CceEEEEEeCCCCCC------cccHHHHHHhhhcc---C--CCc
Q 043039 246 FRVWKAIIENLDGYTPD-LGELNTLHQLINNRIG--GKKVLLVLDDVWTED------GNKWESFQRCLINA---H--RGS 311 (949)
Q Consensus 246 ~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~------~~~~~~l~~~l~~~---~--~gs 311 (949)
..++..++.+++...+. ..+...+...+.+.+. +++++|||||+|... ...+..+...+... . ...
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 99999999998764332 2234455566666554 779999999997632 12233333333322 2 344
Q ss_pred EEEEEccchhhHhhhc--------C-cceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcC------CC
Q 043039 312 KILVTTRKETVARMIG--------S-TCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCK------GL 376 (949)
Q Consensus 312 ~iivTtr~~~v~~~~~--------~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------g~ 376 (949)
.||+||+...+...+. . ...+.+.+++.++++++|..++...... .....+....|++.++ |.
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD--TVWEPRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT--TSCCHHHHHHHHHHHCGGGTSCCC
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC--CCCChHHHHHHHHHHHHhccCCCc
Confidence 5888887655332111 1 2239999999999999998764321111 1112456677888888 99
Q ss_pred chHHHHHHhhhc-----cC---CCHHHHHHHHhhhccchhhhccch-HHHHHhccCCCChhHHHHHhhhcccC--CCccc
Q 043039 377 PLAVKTIGSLLR-----FK---KAREEWQSILDSEIWQVEEFEKNL-LPALLLSYNDLPNEIKRCFSYCAVLP--KECYV 445 (949)
Q Consensus 377 Plal~~~~~~l~-----~~---~~~~~w~~~l~~~~~~~~~~~~~i-~~~l~~sy~~L~~~~k~cf~~~a~fp--~~~~i 445 (949)
|..+..+..... .. -+.+.+..++... . ...+.-.+..||.+.+.++..++.+. .+..+
T Consensus 259 p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~----------~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~ 328 (412)
T 1w5s_A 259 ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN----------EAASIQTHELEALSIHELIILRLIAEATLGGMEWI 328 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC----------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSB
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH----------hccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCc
Confidence 976655543211 01 1233333333220 1 23455677889999999998888653 23345
Q ss_pred ChhhHHHHHH--H---cCccccCCChhhhhHHHHHHHHHHHHHHhccCccccc
Q 043039 446 DRDELIKLWM--A---QGYIDQKGNKEMEMEMEMVGERYFDLLAKRSFFQEFE 493 (949)
Q Consensus 446 ~~~~li~~w~--a---eg~i~~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~ 493 (949)
....+...+. + .|. ... . ......+++.|...+++....
T Consensus 329 ~~~~~~~~~~~~~~~~~~~-~~~-~-------~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 329 NAGLLRQRYEDASLTMYNV-KPR-G-------YTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp CHHHHHHHHHHHHHHHSCC-CCC-C-------HHHHHHHHHHHHHTTSEEEEC
T ss_pred cHHHHHHHHHHHHHhhcCC-CCC-C-------HHHHHHHHHHHHhCCCEEeec
Confidence 5555444332 1 121 000 0 234567899999999997754
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.62 E-value=1.3e-15 Score=157.22 Aligned_cols=94 Identities=14% Similarity=0.287 Sum_probs=52.4
Q ss_pred ceeEEEeCCccccccccccc-cccCCCCCCeeeecccC-Ccccch-hhcCCCCCcEEeecCCCCCCccc-cccccCCCCC
Q 043039 588 CLRALRIGKYGDDAIERIPN-GIEKLIHLRYLKLFFVG-IEELPE-TFCELFNLQNLDLRRCSKFKRLP-QNIGKLVNLR 663 (949)
Q Consensus 588 ~Lr~L~L~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~-i~~lp~-~l~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~ 663 (949)
.|+.|++++|. +..+|. .+.++++|++|++++|. ++.+|. .+..+++|++|++++|..+..+| ..+..+++|+
T Consensus 32 ~l~~L~l~~n~---l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 32 STQTLKLIETH---LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp TCCEEEEESCC---CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred cccEEEEeCCc---ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 56666666665 555544 45566666666666664 655553 45566666666666522255554 3455666666
Q ss_pred eeeCCCcccccCCcCCCCCCCC
Q 043039 664 HLIFDEDDLDYMPKGMGSLTGL 685 (949)
Q Consensus 664 ~L~l~~~~l~~~p~~i~~l~~L 685 (949)
+|++++|.++.+|. ++.+++|
T Consensus 109 ~L~l~~n~l~~lp~-~~~l~~L 129 (239)
T 2xwt_C 109 FLGIFNTGLKMFPD-LTKVYST 129 (239)
T ss_dssp EEEEEEECCCSCCC-CTTCCBC
T ss_pred EEeCCCCCCccccc-ccccccc
Confidence 66666665555543 3333333
No 86
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.61 E-value=4e-14 Score=155.37 Aligned_cols=293 Identities=13% Similarity=0.083 Sum_probs=175.4
Q ss_pred ccCccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCC------CH
Q 043039 172 NVSEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPF------DV 245 (949)
Q Consensus 172 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~------~~ 245 (949)
.+..|+||++++++|.+++... +++.|+|++|+|||||++++.+.. . ++|+++.... +.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--------~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--------PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITR 74 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--------CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCH
Confidence 4567999999999999998531 489999999999999999998752 1 7788775432 56
Q ss_pred HHHHHHHHHhcCC-----------------CCC-CCcchHHHHHHHHhhhCC-ceEEEEEeCCCCCCc-------ccHHH
Q 043039 246 FRVWKAIIENLDG-----------------YTP-DLGELNTLHQLINNRIGG-KKVLLVLDDVWTEDG-------NKWES 299 (949)
Q Consensus 246 ~~~~~~i~~~l~~-----------------~~~-~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~~~-------~~~~~ 299 (949)
..++..+.+.+.. ..+ ...+...+.+.+.+.... ++++|||||++..+. ..+..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 6667766665542 000 113445555556555442 389999999976431 12222
Q ss_pred HHHhhhccCCCcEEEEEccchhhHhhh-----------cC-cceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHH
Q 043039 300 FQRCLINAHRGSKILVTTRKETVARMI-----------GS-TCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGR 367 (949)
Q Consensus 300 l~~~l~~~~~gs~iivTtr~~~v~~~~-----------~~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 367 (949)
+.... ...++.++|+|++.......+ +. ...+.+.+|+.+|+.+++.......+... ..+.+.
T Consensus 155 L~~~~-~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~----~~~~~~ 229 (350)
T 2qen_A 155 FAYAY-DSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV----PENEIE 229 (350)
T ss_dssp HHHHH-HHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC----CHHHHH
T ss_pred HHHHH-HhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHH
Confidence 33322 223577899998876432111 11 24799999999999999987543222111 134678
Q ss_pred HHHHhcCCCchHHHHHHhhhccCCCHHHHHH-HHhhhccchhhhccchHHHHHhccCCCChhHHHHHhhhcccCCCcccC
Q 043039 368 KITWKCKGLPLAVKTIGSLLRFKKAREEWQS-ILDSEIWQVEEFEKNLLPALLLSYNDLPNEIKRCFSYCAVLPKECYVD 446 (949)
Q Consensus 368 ~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~-~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~a~fp~~~~i~ 446 (949)
+|++.++|+|+++..++..+....+...+.. ..+... ......+.. +.+ . ++..+..+..+|. . .++
T Consensus 230 ~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~---l~~-~-~~~~~~~l~~la~-g---~~~ 297 (350)
T 2qen_A 230 EAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAK---GLIMGELEE---LRR-R-SPRYVDILRAIAL-G---YNR 297 (350)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH---HHHHHHHHH---HHH-H-CHHHHHHHHHHHT-T---CCS
T ss_pred HHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHH---HHHHHHHHH---HHh-C-ChhHHHHHHHHHh-C---CCC
Confidence 8999999999999998876532222222211 111000 000111111 112 2 6788888888887 2 134
Q ss_pred hhhHHHHHHHcCccccCCChhhhhHHHHHHHHHHHHHHhccCcccccccCCCCEeEEEE-chhHHHHH
Q 043039 447 RDELIKLWMAQGYIDQKGNKEMEMEMEMVGERYFDLLAKRSFFQEFEKHEEGNVKRYKM-HDIVHGFA 513 (949)
Q Consensus 447 ~~~li~~w~aeg~i~~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~-hdlv~~~~ 513 (949)
...+....... .- +.. ......+++.|.+.+++.... + .|.+ |++++.+.
T Consensus 298 ~~~l~~~~~~~-~~----~~~-----~~~~~~~l~~L~~~gli~~~~----~---~y~~~~p~~~~~~ 348 (350)
T 2qen_A 298 WSLIRDYLAVK-GT----KIP-----EPRLYALLENLKKMNWIVEED----N---TYKIADPVVATVL 348 (350)
T ss_dssp HHHHHHHHHHT-TC----CCC-----HHHHHHHHHHHHHTTSEEEET----T---EEEESSHHHHHHH
T ss_pred HHHHHHHHHHH-hC----CCC-----HHHHHHHHHHHHhCCCEEecC----C---EEEEecHHHHHHH
Confidence 34444333221 00 001 334567899999999997641 1 3454 66776654
No 87
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.61 E-value=3.7e-17 Score=193.78 Aligned_cols=361 Identities=15% Similarity=0.104 Sum_probs=183.3
Q ss_pred CCceEEEEEeccCCCC-ccccc-CCCCceEEEecCC-CCCC--cchhhccCCceeEEEeCCccccc--cccccccccCCC
Q 043039 541 EKLRHSILVLHYNASF-PVSIF-NAKKLRSLLIQGY-SLQH--MPSFFDQLTCLRALRIGKYGDDA--IERIPNGIEKLI 613 (949)
Q Consensus 541 ~~~r~l~l~~~~~~~l-~~~~~-~~~~Lr~L~l~~~-~l~~--l~~~~~~l~~Lr~L~L~~~~~~~--~~~lp~~i~~l~ 613 (949)
+.++++.+.++..... +..+. .+++|++|++.+| .+.. ++..+.++++|++|+|++|.... ...++.....++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 5677888877654321 22332 5788999998888 4443 55656688889999998886211 112334344677
Q ss_pred CCCeeeecccC--Cc--ccchhhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCc-------ccccCCcCCCCC
Q 043039 614 HLRYLKLFFVG--IE--ELPETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDED-------DLDYMPKGMGSL 682 (949)
Q Consensus 614 ~L~~L~L~~~~--i~--~lp~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~-------~l~~~p~~i~~l 682 (949)
+|++|++++|. +. .++.-+..+++|++|++++|..+..+|..+..+++|++|+++.+ .+..++..++++
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~ 264 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence 88899988886 22 23333456788899999888666667777888888888874432 223333344555
Q ss_pred CCCcccCccceecCCCccCCCccCcccc-cccccCCCceEEccCCCCCCh----------------------hhhhhhcc
Q 043039 683 TGLRTLSEFVAVSGGGKYGSKACNLDGL-RHMNHLRGSLKIRGLGNVTDV----------------------DAAKNAEL 739 (949)
Q Consensus 683 ~~L~~L~~~~~~~~~~~~~~~~~~l~~L-~~L~~L~~~l~i~~~~~l~~~----------------------~~~~~~~l 739 (949)
++|+.|..+..... ..+..+ ..+++|+ .+.+..+. +... ........
T Consensus 265 ~~L~~Ls~~~~~~~--------~~l~~~~~~~~~L~-~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~ 334 (594)
T 2p1m_B 265 KELRCLSGFWDAVP--------AYLPAVYSVCSRLT-TLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLA 334 (594)
T ss_dssp TTCCEEECCBTCCG--------GGGGGGHHHHTTCC-EEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHH
T ss_pred CCcccccCCcccch--------hhHHHHHHhhCCCC-EEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHH
Confidence 55555521110000 000000 0111122 22232222 1110 01111112
Q ss_pred cCCCCCCeEEEEecCCCC-cchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhh-cccCCcEEEEe-----ccCC
Q 043039 740 EKKKNLISLELEFDKEEE-EDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWIL-SLNKLRMLCLS-----FCKK 812 (949)
Q Consensus 740 ~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~-~l~~L~~L~L~-----~~~~ 812 (949)
..+++|+.|++..+...+ ..........+......+++|+.|.+.++.++...+..+. .+++|+.|+|+ +|..
T Consensus 335 ~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~ 414 (594)
T 2p1m_B 335 STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY 414 (594)
T ss_dssp HHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCT
T ss_pred HhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccc
Confidence 234555555553321000 0000000000111111245666665555554432223332 46677777777 2222
Q ss_pred CCCCCC-------CCCCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceeeeccccccccccccccccccccccceec
Q 043039 813 CEIMPP-------LGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLA 885 (949)
Q Consensus 813 ~~~~~~-------l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~ 885 (949)
....|. +..+++|+.|+|++ .+...+... ....+++|+.|.+.++. +.+.... .....+++|+.|+
T Consensus 415 l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~---l~~~~~~L~~L~L~~~~-i~~~~~~-~l~~~~~~L~~L~ 487 (594)
T 2p1m_B 415 LTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEY---IGTYAKKMEMLSVAFAG-DSDLGMH-HVLSGCDSLRKLE 487 (594)
T ss_dssp TTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHH---HHHHCTTCCEEEEESCC-SSHHHHH-HHHHHCTTCCEEE
T ss_pred ccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHH---HHHhchhccEeeccCCC-CcHHHHH-HHHhcCCCcCEEE
Confidence 222211 34566777777744 111110000 00136778888887654 2221111 1124689999999
Q ss_pred cccCccCcC-CCCCCCCCCCcceEEEccCCChhH
Q 043039 886 IRDCSKLKM-LPDQVLRSTTLKKLEINDCPILEK 918 (949)
Q Consensus 886 l~~c~~l~~-lp~~~~~l~~L~~L~l~~c~~l~~ 918 (949)
|++|+.... ++..+..+++|+.|++++|+.-.+
T Consensus 488 L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 521 (594)
T 2p1m_B 488 IRDCPFGDKALLANASKLETMRSLWMSSCSVSFG 521 (594)
T ss_dssp EESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHH
T ss_pred CcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHH
Confidence 999976221 222345678999999999987433
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.61 E-value=1.5e-16 Score=173.82 Aligned_cols=100 Identities=20% Similarity=0.164 Sum_probs=63.4
Q ss_pred ceEEEecCCCCCCcchhhccC--CceeEEEeCCccccccccccccccCCCCCCeeeecccCCcc--cchhhcCCCCCcEE
Q 043039 566 LRSLLIQGYSLQHMPSFFDQL--TCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEE--LPETFCELFNLQNL 641 (949)
Q Consensus 566 Lr~L~l~~~~l~~l~~~~~~l--~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~--lp~~l~~L~~L~~L 641 (949)
++.++++++.+. +..+..+ +.++.|+++++. +...+..+..+++|++|++++|.+.. +|..+..+++|++|
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~---l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSF---MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCE---ECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCcc---ccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 455666665544 3344444 667777777766 55555556667777777777776652 56666777777777
Q ss_pred eecCCCCCCccccccccCCCCCeeeCCCc
Q 043039 642 DLRRCSKFKRLPQNIGKLVNLRHLIFDED 670 (949)
Q Consensus 642 ~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 670 (949)
++++|......|..++.+++|++|++++|
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence 77777633355666666677777766554
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=5.8e-15 Score=155.38 Aligned_cols=193 Identities=22% Similarity=0.282 Sum_probs=122.9
Q ss_pred ceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccchhhcCCCCCcEEeecC
Q 043039 566 LRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPETFCELFNLQNLDLRR 645 (949)
Q Consensus 566 Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L~~L~L~~ 645 (949)
+..+.+.++.+..+.. +..+++|+.|+++++. +..++ .+..+++|++|++++|.+..++ .+..+++|++|++++
T Consensus 21 l~~l~l~~~~~~~~~~-~~~l~~L~~L~l~~~~---i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 21 TIKANLKKKSVTDAVT-QNELNSIDQIIANNSD---IKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHTCSCTTSEEC-HHHHTTCCEEECTTSC---CCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTT
T ss_pred HHHHHhcCcccccccc-cccccceeeeeeCCCC---ccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCC
Confidence 3334444444444332 4567778888888877 55554 3777888888888888877764 677888888888888
Q ss_pred CCCCCcccc-ccccCCCCCeeeCCCcccccCCcC-CCCCCCCcccCccceecCCCccCCCccCcccccccccCCCceEEc
Q 043039 646 CSKFKRLPQ-NIGKLVNLRHLIFDEDDLDYMPKG-MGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKIR 723 (949)
Q Consensus 646 ~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~ 723 (949)
|. +..+|. .+..+++|++|++++|.++.+|.. ++.+++|++|++
T Consensus 95 n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L--------------------------------- 140 (272)
T 3rfs_A 95 NQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL--------------------------------- 140 (272)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC---------------------------------
T ss_pred Cc-cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC---------------------------------
Confidence 76 555554 357778888888777777766543 455555555553
Q ss_pred cCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhhcccCCc
Q 043039 724 GLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWILSLNKLR 803 (949)
Q Consensus 724 ~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~ 803 (949)
++|.+... .+..+..+++|+.|++++|.+.+..+..+..+++|+
T Consensus 141 ---------------------------~~n~l~~~---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 184 (272)
T 3rfs_A 141 ---------------------------AHNQLQSL---------PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK 184 (272)
T ss_dssp ---------------------------CSSCCCCC---------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ---------------------------CCCccCcc---------CHHHhccCccCCEEECCCCCcCccCHHHhcCCccCC
Confidence 33322211 112234556677777777766663334456677777
Q ss_pred EEEEeccCCCCCCCC-CCCCCCcceeeecCCC
Q 043039 804 MLCLSFCKKCEIMPP-LGKLQSLEVLDIWEMH 834 (949)
Q Consensus 804 ~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~ 834 (949)
.|++++|.+....+. ++.+++|++|++.+|+
T Consensus 185 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 185 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 777777776665554 5677777777776654
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.60 E-value=4.2e-15 Score=153.28 Aligned_cols=131 Identities=15% Similarity=0.232 Sum_probs=104.6
Q ss_pred CCCCcccccCCCCceEEEecCCCCCCcch-hhccCCceeEEEeCCccccccccccc-cccCCCCCCeeeecc-cCCcccc
Q 043039 553 NASFPVSIFNAKKLRSLLIQGYSLQHMPS-FFDQLTCLRALRIGKYGDDAIERIPN-GIEKLIHLRYLKLFF-VGIEELP 629 (949)
Q Consensus 553 ~~~l~~~~~~~~~Lr~L~l~~~~l~~l~~-~~~~l~~Lr~L~L~~~~~~~~~~lp~-~i~~l~~L~~L~L~~-~~i~~lp 629 (949)
...+|. + .++|+.|++++|.++.++. .|.++++|+.|++++|.. +..++. .+.++++|++|++++ |.++.+|
T Consensus 23 l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~--l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 23 IQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT--LQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSS--CCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred ccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCC--cceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 555565 3 3489999999999998865 688999999999999852 556654 688999999999998 8899887
Q ss_pred -hhhcCCCCCcEEeecCCCCCCccccccccCCCCC---eeeCCCc-ccccCCcC-CCCCCCCc-ccCc
Q 043039 630 -ETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLR---HLIFDED-DLDYMPKG-MGSLTGLR-TLSE 690 (949)
Q Consensus 630 -~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~---~L~l~~~-~l~~~p~~-i~~l~~L~-~L~~ 690 (949)
..+..+++|++|++++|. +..+|. +..+++|+ +|++++| .++.+|.. +..+++|+ .|++
T Consensus 98 ~~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l 163 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163 (239)
T ss_dssp TTSEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEEC
T ss_pred HHHhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEc
Confidence 467899999999999988 777886 88888888 8988888 78777653 66666666 6653
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.59 E-value=6.2e-17 Score=180.28 Aligned_cols=242 Identities=17% Similarity=0.189 Sum_probs=147.7
Q ss_pred CCcccccCCCCceEEEecCCCCCC-----cchhhccCCceeEEEeCCccccccc-ccccc-------ccCCCCCCeeeec
Q 043039 555 SFPVSIFNAKKLRSLLIQGYSLQH-----MPSFFDQLTCLRALRIGKYGDDAIE-RIPNG-------IEKLIHLRYLKLF 621 (949)
Q Consensus 555 ~l~~~~~~~~~Lr~L~l~~~~l~~-----l~~~~~~l~~Lr~L~L~~~~~~~~~-~lp~~-------i~~l~~L~~L~L~ 621 (949)
.++..+..+++|++|++++|.+.. ++..+..+++|++|+|++|....+. .+|.. +..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 445666778888899988887764 3344677888888888887421111 23333 4678888888888
Q ss_pred ccCCcc-----cchhhcCCCCCcEEeecCCCCCC----ccccccccC---------CCCCeeeCCCcccc--cCC---cC
Q 043039 622 FVGIEE-----LPETFCELFNLQNLDLRRCSKFK----RLPQNIGKL---------VNLRHLIFDEDDLD--YMP---KG 678 (949)
Q Consensus 622 ~~~i~~-----lp~~l~~L~~L~~L~L~~~~~l~----~lp~~i~~L---------~~L~~L~l~~~~l~--~~p---~~ 678 (949)
+|.+.. +|..+..+++|++|+|++|.... .++..+..+ ++|++|++++|.++ .+| ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 888775 67788888888888888887321 233344444 78888888887775 333 34
Q ss_pred CCCCCCCcccCccceecCCCccCCCccCcccccccccCCCceEEccCCCCCCh--hhhhhhcccCCCCCCeEEEEecCCC
Q 043039 679 MGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDV--DAAKNAELEKKKNLISLELEFDKEE 756 (949)
Q Consensus 679 i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~ 756 (949)
+..+++|++|++..| . +... .......+..+++|+.|++++|.+.
T Consensus 183 l~~~~~L~~L~L~~n----~-----------------------------l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQN----G-----------------------------IRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp HHHCTTCCEEECCSS----C-----------------------------CCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred HHhCCCcCEEECcCC----C-----------------------------CCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence 455666666653321 0 0000 0000113455667777777776653
Q ss_pred CcchhhhcHHHHhhcCCCCCCcCceEEeccccCCC----CCchhhc--ccCCcEEEEeccCCCC----CCCC-C-CCCCC
Q 043039 757 EEDEDEVNHQAIIEALRPHPNLESLQISFYEVKAR----FPNWILS--LNKLRMLCLSFCKKCE----IMPP-L-GKLQS 824 (949)
Q Consensus 757 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~----~p~~~~~--l~~L~~L~L~~~~~~~----~~~~-l-~~l~~ 824 (949)
.. +...++..+..+++|+.|+|++|.+... +|.++.. +++|+.|+|++|.+.. .++. + .++++
T Consensus 230 ~~-----g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~ 304 (386)
T 2ca6_A 230 HL-----GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 304 (386)
T ss_dssp HH-----HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTT
T ss_pred cH-----HHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCC
Confidence 21 2233555666667777777777766542 2444432 6677777777776554 2332 3 44666
Q ss_pred cceeeecCCC
Q 043039 825 LEVLDIWEMH 834 (949)
Q Consensus 825 L~~L~L~~~~ 834 (949)
|++|++++|.
T Consensus 305 L~~L~l~~N~ 314 (386)
T 2ca6_A 305 LLFLELNGNR 314 (386)
T ss_dssp CCEEECTTSB
T ss_pred ceEEEccCCc
Confidence 7777776654
No 92
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.59 E-value=1.2e-15 Score=134.09 Aligned_cols=81 Identities=27% Similarity=0.493 Sum_probs=75.1
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHhHhhhhhHHH
Q 043039 4 AIVSAVLKQLNSTAVEEAKEQVRLVTGVEKEVKRLQDNLEAIQAVLADAERR--QVKEEHVRLWLDKLKQASYDIDDVLD 81 (949)
Q Consensus 4 ~~v~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~l~~~~~~~ed~ld 81 (949)
|+|+++++||++ ++.+|+..+.|++++++.|+++|++|++||.+|+.+ +..+++++.|+++||++|||+|||||
T Consensus 1 a~v~~ll~KL~~----ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD 76 (115)
T 3qfl_A 1 AAISNLIPKLGE----LLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVD 76 (115)
T ss_dssp CTTCSHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH----HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999988 999999999999999999999999999999999987 55789999999999999999999999
Q ss_pred HHHHhhh
Q 043039 82 EWNTARG 88 (949)
Q Consensus 82 ~~~~~~~ 88 (949)
+|.++..
T Consensus 77 ~f~~~~~ 83 (115)
T 3qfl_A 77 KFLVQVD 83 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9998763
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=7.3e-15 Score=157.96 Aligned_cols=225 Identities=16% Similarity=0.094 Sum_probs=153.3
Q ss_pred CCCCceEEEecCCCCCC--cchh--hccCCceeEEEeCCccccccccccccc--cCCCCCCeeeecccCCccc-c----h
Q 043039 562 NAKKLRSLLIQGYSLQH--MPSF--FDQLTCLRALRIGKYGDDAIERIPNGI--EKLIHLRYLKLFFVGIEEL-P----E 630 (949)
Q Consensus 562 ~~~~Lr~L~l~~~~l~~--l~~~--~~~l~~Lr~L~L~~~~~~~~~~lp~~i--~~l~~L~~L~L~~~~i~~l-p----~ 630 (949)
....++.|.+.++.+.. +... +..+++|+.|++++|.. ....|..+ ..+++|++|++++|.+... | .
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l--~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 139 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKI--TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL 139 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCC--BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEe--ccchhhhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence 34457788888776642 1111 23456799999999873 23456666 8899999999999998752 2 3
Q ss_pred hhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCccccc---CC--cCCCCCCCCcccCccceecCCCccCCCcc
Q 043039 631 TFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDY---MP--KGMGSLTGLRTLSEFVAVSGGGKYGSKAC 705 (949)
Q Consensus 631 ~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~---~p--~~i~~l~~L~~L~~~~~~~~~~~~~~~~~ 705 (949)
.+..+++|++|++++|......|..++.+++|++|++++|.+.. ++ ..++.+++|++|++..| .
T Consensus 140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N----~------- 208 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT----G------- 208 (310)
T ss_dssp HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS----C-------
T ss_pred HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC----C-------
Confidence 45578899999999988544445678899999999999988653 33 23467788888875431 1
Q ss_pred CcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCC---CCcCceE
Q 043039 706 NLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPH---PNLESLQ 782 (949)
Q Consensus 706 ~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~---~~L~~L~ 782 (949)
+ +.+.......+..+++|+.|++++|.+.+. .+..+..+ ++|+.|+
T Consensus 209 ----------l------------~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~---------~p~~~~~~~~~~~L~~L~ 257 (310)
T 4glp_A 209 ----------M------------ETPTGVCAALAAAGVQPHSLDLSHNSLRAT---------VNPSAPRCMWSSALNSLN 257 (310)
T ss_dssp ----------C------------CCHHHHHHHHHHHTCCCSSEECTTSCCCCC---------CCSCCSSCCCCTTCCCEE
T ss_pred ----------C------------CchHHHHHHHHhcCCCCCEEECCCCCCCcc---------chhhHHhccCcCcCCEEE
Confidence 1 111111111235567888888888877653 23334433 6888888
Q ss_pred EeccccCCCCCchhhcccCCcEEEEeccCCCCCCCCCCCCCCcceeeecCCC
Q 043039 783 ISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMPPLGKLQSLEVLDIWEMH 834 (949)
Q Consensus 783 L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~ 834 (949)
|++|.+.. +|..+. ++|+.|+|++|.+... |.+..+++|+.|+|++++
T Consensus 258 Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 258 LSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCSSCCCS-CCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTT
T ss_pred CCCCCCCc-hhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCC
Confidence 88888885 787664 7888888888877653 446778888888887765
No 94
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.55 E-value=4.7e-13 Score=147.29 Aligned_cols=291 Identities=12% Similarity=0.102 Sum_probs=171.0
Q ss_pred ccCccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCC-----CCHH
Q 043039 172 NVSEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDP-----FDVF 246 (949)
Q Consensus 172 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~ 246 (949)
.+..|+||+++++.|.+ +.. +++.|+|++|+|||||++++.+.. .. ..+|+++... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEEchhhccccCCCHH
Confidence 44679999999999999 732 489999999999999999998752 21 2578887642 3444
Q ss_pred HHHHHHHHhcCC-------------C-----CC-----------CCcchHHHHHHHHhhhCCceEEEEEeCCCCCCc---
Q 043039 247 RVWKAIIENLDG-------------Y-----TP-----------DLGELNTLHQLINNRIGGKKVLLVLDDVWTEDG--- 294 (949)
Q Consensus 247 ~~~~~i~~~l~~-------------~-----~~-----------~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--- 294 (949)
..+..+.+.+.. . .+ .......+.+.+.+.-. ++++|||||++..+.
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 454444443210 0 00 11234455555554333 499999999965321
Q ss_pred ccHHHHHHhhhccCCCcEEEEEccchhhHhh----------h-cC-cceEeCCCCChHhHHHHHHHHhhccCCCCCchhH
Q 043039 295 NKWESFQRCLINAHRGSKILVTTRKETVARM----------I-GS-TCVISIEELSEPECWSLFKRFAFLNRSRSDCKQL 362 (949)
Q Consensus 295 ~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~----------~-~~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 362 (949)
..+..+...+.....+.++|+|++....... . +. ...+.+.+|+.+++.+++.......+.... ..
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~--~~ 232 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK--DY 232 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC--CH
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC--cH
Confidence 2333333333333346789999997653221 1 11 257899999999999999875432121111 11
Q ss_pred HHHHHHHHHhcCCCchHHHHHHhhhccCCCHHHHHHHHhhhccchhhhccchHHHHH-hccC--CCChhHHHHHhhhccc
Q 043039 363 EEIGRKITWKCKGLPLAVKTIGSLLRFKKAREEWQSILDSEIWQVEEFEKNLLPALL-LSYN--DLPNEIKRCFSYCAVL 439 (949)
Q Consensus 363 ~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~-~sy~--~L~~~~k~cf~~~a~f 439 (949)
..|++.++|+|+++..++..+....+...|..-... .....+...+. +.++ .+++..+..+..+|.
T Consensus 233 ----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~- 301 (357)
T 2fna_A 233 ----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLE------YAKKLILKEFENFLHGREIARKRYLNIMRTLSK- 301 (357)
T ss_dssp ----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHH------HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-
T ss_pred ----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHH------HHHHHHHHHHHHHhhccccccHHHHHHHHHHHc-
Confidence 788999999999999998776433333333221110 00001111111 1111 577888999998888
Q ss_pred CCCcccChhhHHHHHH-HcCccccCCChhhhhHHHHHHHHHHHHHHhccCcccccccCCCCEeEEE-EchhHHHH
Q 043039 440 PKECYVDRDELIKLWM-AQGYIDQKGNKEMEMEMEMVGERYFDLLAKRSFFQEFEKHEEGNVKRYK-MHDIVHGF 512 (949)
Q Consensus 440 p~~~~i~~~~li~~w~-aeg~i~~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~-~hdlv~~~ 512 (949)
. . +...+..... ..|. .. . ......+++.|.+.+++.... + .|+ .|++++++
T Consensus 302 g--~--~~~~l~~~~~~~~g~--~~-~-------~~~~~~~L~~L~~~gli~~~~----~---~y~f~~~~~~~~ 355 (357)
T 2fna_A 302 C--G--KWSDVKRALELEEGI--EI-S-------DSEIYNYLTQLTKHSWIIKEG----E---KYCPSEPLISLA 355 (357)
T ss_dssp C--B--CHHHHHHHHHHHHCS--CC-C-------HHHHHHHHHHHHHTTSEEESS----S---CEEESSHHHHHH
T ss_pred C--C--CHHHHHHHHHHhcCC--CC-C-------HHHHHHHHHHHHhCCCEEecC----C---EEEecCHHHHHh
Confidence 2 1 3333332211 1121 00 0 334567899999999997642 1 245 46777664
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.53 E-value=4.6e-14 Score=154.45 Aligned_cols=106 Identities=16% Similarity=0.251 Sum_probs=74.1
Q ss_pred eEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccc-cccCCCCCCeeeecccCCc-ccch-hhcCCCCCcEEee
Q 043039 567 RSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPN-GIEKLIHLRYLKLFFVGIE-ELPE-TFCELFNLQNLDL 643 (949)
Q Consensus 567 r~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~-~lp~-~l~~L~~L~~L~L 643 (949)
++++.+++.++.+|..+ .++++.|+|++|. ++.+|. .+.++++|++|+|++|.+. .+|. .+.++++|+.+..
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~---i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTK---LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCC---CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCc---CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 56777777788777644 2568888888887 777775 4778888888888888864 4553 4667777766444
Q ss_pred cCCCCCCccc-cccccCCCCCeeeCCCcccccCCc
Q 043039 644 RRCSKFKRLP-QNIGKLVNLRHLIFDEDDLDYMPK 677 (949)
Q Consensus 644 ~~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~~p~ 677 (949)
.++..+..+| ..+..+++|++|++++|.+..+|.
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~ 121 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD 121 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCc
Confidence 4333366664 456778888888888887776664
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.53 E-value=9.8e-14 Score=151.78 Aligned_cols=236 Identities=14% Similarity=0.168 Sum_probs=170.0
Q ss_pred eEEEeCCccccccccccccccCCCCCCeeeecccCCcccch-hhcCCCCCcEEeecCCCCCCcccc-ccccCCCCCeee-
Q 043039 590 RALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPE-TFCELFNLQNLDLRRCSKFKRLPQ-NIGKLVNLRHLI- 666 (949)
Q Consensus 590 r~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~l~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~- 666 (949)
++++.+++. ++.+|..+ ..++++|+|++|.|+.+|+ .|.++++|++|+|++|...+.+|. .+.++++|..+.
T Consensus 12 ~~v~C~~~~---Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 12 RVFLCQESK---VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TEEEEESTT---CCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred CEEEecCCC---CCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 567777776 88899876 4689999999999999986 589999999999999996677775 468899888755
Q ss_pred CCCcccccCC-cCCCCCCCCcccCccceecCCCccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCC
Q 043039 667 FDEDDLDYMP-KGMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNL 745 (949)
Q Consensus 667 l~~~~l~~~p-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L 745 (949)
+++|+++.+| ..++.+++|+.|++..+ . + ..+. .. ......++
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n----~--------l---~~~~------------~~---------~~~~~~~l 130 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNT----G--------I---KHLP------------DV---------HKIHSLQK 130 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEE----C--------C---SSCC------------CC---------TTCCBSSC
T ss_pred ccCCcccccCchhhhhcccccccccccc----c--------c---ccCC------------ch---------hhcccchh
Confidence 7788999885 55789999999985542 1 0 0000 00 01122345
Q ss_pred CeEEEEecC-CCCcchhhhcHHHHhhcCCCC-CCcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCCCCCC--CCC
Q 043039 746 ISLELEFDK-EEEEDEDEVNHQAIIEALRPH-PNLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMPP--LGK 821 (949)
Q Consensus 746 ~~L~l~~~~-~~~~~~~~~~~~~~~~~l~~~-~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~--l~~ 821 (949)
..|++..+. +... ....+..+ ..++.|++++|.+.. +|.......+|+.|.+.++...+.+|. ++.
T Consensus 131 ~~l~l~~~~~i~~l---------~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~ 200 (350)
T 4ay9_X 131 VLLDIQDNINIHTI---------ERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHG 200 (350)
T ss_dssp EEEEEESCTTCCEE---------CTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTT
T ss_pred hhhhhccccccccc---------cccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhcc
Confidence 566665432 2221 11233333 468899999999887 887777778999999987666665654 789
Q ss_pred CCCcceeeecCCCCcEEeCCcccCCCCCCCCccceeeeccccccccccccccccccccccceecccc
Q 043039 822 LQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRD 888 (949)
Q Consensus 822 l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~ 888 (949)
+++|++|+|+++. ++.++ ...|.+|+.|...++.+++.+.. +..+++|+.+++.+
T Consensus 201 l~~L~~LdLs~N~-l~~lp-------~~~~~~L~~L~~l~~~~l~~lP~----l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 201 ASGPVILDISRTR-IHSLP-------SYGLENLKKLRARSTYNLKKLPT----LEKLVALMEASLTY 255 (350)
T ss_dssp EECCSEEECTTSC-CCCCC-------SSSCTTCCEEECTTCTTCCCCCC----TTTCCSCCEEECSC
T ss_pred CcccchhhcCCCC-cCccC-------hhhhccchHhhhccCCCcCcCCC----chhCcChhhCcCCC
Confidence 9999999998875 43333 23688899999888877665542 45788999998865
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.53 E-value=3.1e-15 Score=166.48 Aligned_cols=251 Identities=15% Similarity=0.128 Sum_probs=182.4
Q ss_pred CCceEEEEEeccCCC-----CcccccCCCCceEEEecCCCCCC----cchh-------hccCCceeEEEeCCcccccccc
Q 043039 541 EKLRHSILVLHYNAS-----FPVSIFNAKKLRSLLIQGYSLQH----MPSF-------FDQLTCLRALRIGKYGDDAIER 604 (949)
Q Consensus 541 ~~~r~l~l~~~~~~~-----l~~~~~~~~~Lr~L~l~~~~l~~----l~~~-------~~~l~~Lr~L~L~~~~~~~~~~ 604 (949)
..++.+.+.++.+.. ++..+..+++|++|++++|.+.. +|.. +..+++|++|+|++|. +..
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~---l~~ 108 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA---FGP 108 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC---CCT
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc---CCH
Confidence 567888888776543 23446789999999999986553 3433 4789999999999998 444
Q ss_pred -----ccccccCCCCCCeeeecccCCcc-----cchhhcCC---------CCCcEEeecCCCCC-Cccc---cccccCCC
Q 043039 605 -----IPNGIEKLIHLRYLKLFFVGIEE-----LPETFCEL---------FNLQNLDLRRCSKF-KRLP---QNIGKLVN 661 (949)
Q Consensus 605 -----lp~~i~~l~~L~~L~L~~~~i~~-----lp~~l~~L---------~~L~~L~L~~~~~l-~~lp---~~i~~L~~ 661 (949)
+|..+..+++|++|+|++|.+.. ++..+..+ ++|++|++++|... ..+| ..+..+++
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 188 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 188 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCC
Confidence 78889999999999999999863 34445555 89999999999843 3455 56788999
Q ss_pred CCeeeCCCcccc------cCCcCCCCCCCCcccCccceecCCCccCCCccCcccccccccCCCceEEccCCCCCCh-hhh
Q 043039 662 LRHLIFDEDDLD------YMPKGMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDV-DAA 734 (949)
Q Consensus 662 L~~L~l~~~~l~------~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~-~~~ 734 (949)
|++|++++|.+. .+|..+..+++|+.|++..| . +. .. ...
T Consensus 189 L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n----~-----------------l~------------~~g~~~ 235 (386)
T 2ca6_A 189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN----T-----------------FT------------HLGSSA 235 (386)
T ss_dssp CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS----C-----------------CH------------HHHHHH
T ss_pred cCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC----C-----------------CC------------cHHHHH
Confidence 999999999887 34447888888988885431 1 00 00 011
Q ss_pred hhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcC--CCCCCcCceEEeccccCC----CCCchh-hcccCCcEEEE
Q 043039 735 KNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEAL--RPHPNLESLQISFYEVKA----RFPNWI-LSLNKLRMLCL 807 (949)
Q Consensus 735 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~L~~~~~~~----~~p~~~-~~l~~L~~L~L 807 (949)
....+..+++|+.|++++|.+.+. +...++..+ ..+++|+.|+|++|.+.. .+|.++ .++++|+.|+|
T Consensus 236 l~~~l~~~~~L~~L~L~~n~i~~~-----~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 236 LAIALKSWPNLRELGLNDCLLSAR-----GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp HHHHGGGCTTCCEEECTTCCCCHH-----HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHccCCCcCEEECCCCCCchh-----hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 123466788999999999987643 233455666 448999999999999887 477777 56899999999
Q ss_pred eccCCCCCCCC----CCCCCCcceeeecC
Q 043039 808 SFCKKCEIMPP----LGKLQSLEVLDIWE 832 (949)
Q Consensus 808 ~~~~~~~~~~~----l~~l~~L~~L~L~~ 832 (949)
++|.+....+. ...+++++.+.+..
T Consensus 311 ~~N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 311 NGNRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp TTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred cCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 99988765531 22356666555543
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.51 E-value=3.5e-15 Score=164.30 Aligned_cols=226 Identities=12% Similarity=0.052 Sum_probs=127.7
Q ss_pred EEecCCCCCC-cchhhccCCceeEEEeCCcccccccccc-----ccccCCC-CCCeeeecccCCccc-chhhcCC-----
Q 043039 569 LLIQGYSLQH-MPSFFDQLTCLRALRIGKYGDDAIERIP-----NGIEKLI-HLRYLKLFFVGIEEL-PETFCEL----- 635 (949)
Q Consensus 569 L~l~~~~l~~-l~~~~~~l~~Lr~L~L~~~~~~~~~~lp-----~~i~~l~-~L~~L~L~~~~i~~l-p~~l~~L----- 635 (949)
+.++.|.+.. +|.++...++|+.|+|++|. +...+ ..+..++ +|++|+|++|.+... +..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~---l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNN---LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSC---GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCC---CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence 3455555553 34444444557777777766 44443 4456666 677777777776644 3444443
Q ss_pred CCCcEEeecCCCCCCccccc----cccC-CCCCeeeCCCcccccCCcC-----CCC-CCCCcccCccceecCCCccCCCc
Q 043039 636 FNLQNLDLRRCSKFKRLPQN----IGKL-VNLRHLIFDEDDLDYMPKG-----MGS-LTGLRTLSEFVAVSGGGKYGSKA 704 (949)
Q Consensus 636 ~~L~~L~L~~~~~l~~lp~~----i~~L-~~L~~L~l~~~~l~~~p~~-----i~~-l~~L~~L~~~~~~~~~~~~~~~~ 704 (949)
++|++|+|++|......+.. +..+ ++|++|++++|.++..+.. +.. .++|++|++..| .
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N----~------ 149 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN----D------ 149 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS----C------
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC----c------
Confidence 67777777777632233332 3333 6777777777766654321 222 245555553321 0
Q ss_pred cCcccccccccCCCceEEccCCCCCChhhhhhhcccCCC-CCCeEEEEecCCCCcchhhhcHHHHhhcCCCC-CCcCceE
Q 043039 705 CNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKK-NLISLELEFDKEEEEDEDEVNHQAIIEALRPH-PNLESLQ 782 (949)
Q Consensus 705 ~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~ 782 (949)
+. ..........+...+ +|+.|++++|.+.+. ....+...+..+ ++|+.|+
T Consensus 150 -----------l~-----------~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~-----~~~~l~~~l~~~~~~L~~L~ 202 (362)
T 3goz_A 150 -----------LG-----------IKSSDELIQILAAIPANVNSLNLRGNNLASK-----NCAELAKFLASIPASVTSLD 202 (362)
T ss_dssp -----------GG-----------GSCHHHHHHHHHTSCTTCCEEECTTSCGGGS-----CHHHHHHHHHTSCTTCCEEE
T ss_pred -----------CC-----------HHHHHHHHHHHhcCCccccEeeecCCCCchh-----hHHHHHHHHHhCCCCCCEEE
Confidence 00 000011112233444 888888888876543 223344455555 4888888
Q ss_pred EeccccCCC----CCchhhc-ccCCcEEEEeccCCCCCCC-----CCCCCCCcceeeecCCC
Q 043039 783 ISFYEVKAR----FPNWILS-LNKLRMLCLSFCKKCEIMP-----PLGKLQSLEVLDIWEMH 834 (949)
Q Consensus 783 L~~~~~~~~----~p~~~~~-l~~L~~L~L~~~~~~~~~~-----~l~~l~~L~~L~L~~~~ 834 (949)
|++|.+... ++..+.. .++|+.|+|++|.+....+ .+..+++|++|+|++|.
T Consensus 203 Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 203 LSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 888887652 3344444 3588888888887665432 25677888888887764
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.51 E-value=1.2e-13 Score=143.26 Aligned_cols=105 Identities=24% Similarity=0.370 Sum_probs=52.5
Q ss_pred ceEEEecCCCCCCcchhhccCCceeEEEeCCcccccccccc-ccccCCCCCCeeeecccCCcccch-hhcCCCCCcEEee
Q 043039 566 LRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIP-NGIEKLIHLRYLKLFFVGIEELPE-TFCELFNLQNLDL 643 (949)
Q Consensus 566 Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~l~~L~~L~~L~L 643 (949)
.++++++++.++.+|..+. +.|+.|+|++|. +..++ ..+.++++|++|+|++|.+..+++ .+..+++|++|++
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTG---LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSC---CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCC---cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4455555555555554332 355555555555 33332 235555555555555555554432 2455555555555
Q ss_pred cCCCCCCccc-cccccCCCCCeeeCCCcccccCC
Q 043039 644 RRCSKFKRLP-QNIGKLVNLRHLIFDEDDLDYMP 676 (949)
Q Consensus 644 ~~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~~p 676 (949)
++|. +..+| ..+..+++|++|++++|.++.+|
T Consensus 91 ~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 123 (251)
T 3m19_A 91 ANNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLP 123 (251)
T ss_dssp TTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCc-ccccChhHhcccCCCCEEEcCCCcCCCcC
Confidence 5554 33333 23345555555555555444443
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.50 E-value=1e-13 Score=147.08 Aligned_cols=106 Identities=14% Similarity=0.256 Sum_probs=62.8
Q ss_pred CCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccchhhcCCCCCcEE
Q 043039 562 NAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPETFCELFNLQNL 641 (949)
Q Consensus 562 ~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L~~L 641 (949)
.+++|+.|++++|.+..++. +..+++|+.|++++|. +..++. +..+++|++|++++|.+..+|. +..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~---l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNK---LTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSC---CCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCc---cCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence 45566666666666665544 5566666666666665 555544 6666666666666666665543 5666666666
Q ss_pred eecCCCCCCccccccccCCCCCeeeCCCcccccC
Q 043039 642 DLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYM 675 (949)
Q Consensus 642 ~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~ 675 (949)
++++|. +..++ .+..+++|++|++++|.++.+
T Consensus 118 ~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~l~~~ 149 (291)
T 1h6t_A 118 SLEHNG-ISDIN-GLVHLPQLESLYLGNNKITDI 149 (291)
T ss_dssp ECTTSC-CCCCG-GGGGCTTCCEEECCSSCCCCC
T ss_pred ECCCCc-CCCCh-hhcCCCCCCEEEccCCcCCcc
Confidence 666655 44443 455566666666655555443
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.50 E-value=2.1e-13 Score=141.58 Aligned_cols=174 Identities=18% Similarity=0.209 Sum_probs=118.5
Q ss_pred CceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccch-hhcCCCCCcEEeecCCCCCCccccccccCCCCCee
Q 043039 587 TCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPE-TFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHL 665 (949)
Q Consensus 587 ~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 665 (949)
...+.++++++. +..+|..+. .+|++|+|++|.+..++. .+..+++|++|+|++|......|..+..+++|++|
T Consensus 14 ~~~~~l~~~~~~---l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 14 EGKKEVDCQGKS---LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL 88 (251)
T ss_dssp GGGTEEECTTCC---CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCeEEecCCCC---ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEE
Confidence 346778888877 778887665 588888888888887754 57888888888888887333334457888888888
Q ss_pred eCCCcccccCCc-CCCCCCCCcccCccceecCCCccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCC
Q 043039 666 IFDEDDLDYMPK-GMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKN 744 (949)
Q Consensus 666 ~l~~~~l~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~ 744 (949)
++++|.++.+|. .++.+++|++|+
T Consensus 89 ~L~~n~l~~~~~~~~~~l~~L~~L~------------------------------------------------------- 113 (251)
T 3m19_A 89 GLANNQLASLPLGVFDHLTQLDKLY------------------------------------------------------- 113 (251)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEE-------------------------------------------------------
T ss_pred ECCCCcccccChhHhcccCCCCEEE-------------------------------------------------------
Confidence 888888776663 345555555555
Q ss_pred CCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCCCCC-CCCCCC
Q 043039 745 LISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMP-PLGKLQ 823 (949)
Q Consensus 745 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~-~l~~l~ 823 (949)
+++|.+... ....+..+++|+.|+|++|.+.+..+..+..+++|+.|+|++|.+....+ .+..++
T Consensus 114 -----L~~N~l~~~---------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 179 (251)
T 3m19_A 114 -----LGGNQLKSL---------PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG 179 (251)
T ss_dssp -----CCSSCCCCC---------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred -----cCCCcCCCc---------ChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCC
Confidence 333332221 11234456677777777777776223356777888888888887766555 367778
Q ss_pred CcceeeecCCC
Q 043039 824 SLEVLDIWEMH 834 (949)
Q Consensus 824 ~L~~L~L~~~~ 834 (949)
+|++|+|.+++
T Consensus 180 ~L~~L~l~~N~ 190 (251)
T 3m19_A 180 KLQTITLFGNQ 190 (251)
T ss_dssp TCCEEECCSCC
T ss_pred CCCEEEeeCCc
Confidence 88888887665
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.50 E-value=7e-14 Score=150.24 Aligned_cols=203 Identities=17% Similarity=0.113 Sum_probs=128.7
Q ss_pred CCCCceEEEecCCCCCC-cchhh--ccCCceeEEEeCCcccccccc-cc----ccccCCCCCCeeeecccCCcccc-hhh
Q 043039 562 NAKKLRSLLIQGYSLQH-MPSFF--DQLTCLRALRIGKYGDDAIER-IP----NGIEKLIHLRYLKLFFVGIEELP-ETF 632 (949)
Q Consensus 562 ~~~~Lr~L~l~~~~l~~-l~~~~--~~l~~Lr~L~L~~~~~~~~~~-lp----~~i~~l~~L~~L~L~~~~i~~lp-~~l 632 (949)
.+++|+.|++++|.+.. .|..+ ..+++|+.|+|++|. +.. .+ ..+..+++|++|++++|.+..+| ..+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~---i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 165 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS---WATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV 165 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC---CSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc---ccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh
Confidence 34567777777777663 34444 677777788887776 332 11 23456777888888877777664 566
Q ss_pred cCCCCCcEEeecCCCCCCc--cc--cccccCCCCCeeeCCCcccccCCcC----CCCCCCCcccCccceecCCCccCCCc
Q 043039 633 CELFNLQNLDLRRCSKFKR--LP--QNIGKLVNLRHLIFDEDDLDYMPKG----MGSLTGLRTLSEFVAVSGGGKYGSKA 704 (949)
Q Consensus 633 ~~L~~L~~L~L~~~~~l~~--lp--~~i~~L~~L~~L~l~~~~l~~~p~~----i~~l~~L~~L~~~~~~~~~~~~~~~~ 704 (949)
+.+++|++|+|++|..... ++ ..++.+++|++|++++|.++.+|.. ++.+++|++|++..| .
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N----~------ 235 (310)
T 4glp_A 166 RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN----S------ 235 (310)
T ss_dssp CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS----C------
T ss_pred ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC----C------
Confidence 7777888888887763321 32 2235677788888777777655542 356677777775432 1
Q ss_pred cCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEe
Q 043039 705 CNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQIS 784 (949)
Q Consensus 705 ~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~ 784 (949)
+.+. ....+ ..+..+++|+.|++++|.+.. ++..+. ++|+.|+|+
T Consensus 236 -----------l~~~-~p~~~-----------~~~~~~~~L~~L~Ls~N~l~~----------lp~~~~--~~L~~L~Ls 280 (310)
T 4glp_A 236 -----------LRAT-VNPSA-----------PRCMWSSALNSLNLSFAGLEQ----------VPKGLP--AKLRVLDLS 280 (310)
T ss_dssp -----------CCCC-CCSCC-----------SSCCCCTTCCCEECCSSCCCS----------CCSCCC--SCCSCEECC
T ss_pred -----------CCcc-chhhH-----------HhccCcCcCCEEECCCCCCCc----------hhhhhc--CCCCEEECC
Confidence 1000 00000 011223578888888887763 333342 689999999
Q ss_pred ccccCCCCCchhhcccCCcEEEEeccCCCC
Q 043039 785 FYEVKARFPNWILSLNKLRMLCLSFCKKCE 814 (949)
Q Consensus 785 ~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~ 814 (949)
+|.+.+ +|. +..+++|+.|+|++|.+.+
T Consensus 281 ~N~l~~-~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 281 SNRLNR-APQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCCCS-CCC-TTSCCCCSCEECSSTTTSC
T ss_pred CCcCCC-Cch-hhhCCCccEEECcCCCCCC
Confidence 999887 665 5778999999999997654
No 103
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.50 E-value=1.1e-15 Score=181.13 Aligned_cols=322 Identities=15% Similarity=0.111 Sum_probs=173.5
Q ss_pred CCCCceEEEecCCC--CC--CcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeeccc-------CCcccch
Q 043039 562 NAKKLRSLLIQGYS--LQ--HMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFV-------GIEELPE 630 (949)
Q Consensus 562 ~~~~Lr~L~l~~~~--l~--~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~-------~i~~lp~ 630 (949)
.+++|++|++++|. +. .++..+..+++|++|++++|.. +..+|..+..+++|++|++..+ .+..++.
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~--~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP--LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC--HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc--HHHHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence 44455555555543 11 1222233445555555555522 3334444555555555553332 2233444
Q ss_pred hhcCCCCCcEE-eecCCCCCCccccccccCCCCCeeeCCCccccc--CCcCCCCCCCCcccCccceecCCCccCCCccCc
Q 043039 631 TFCELFNLQNL-DLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDY--MPKGMGSLTGLRTLSEFVAVSGGGKYGSKACNL 707 (949)
Q Consensus 631 ~l~~L~~L~~L-~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~--~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l 707 (949)
.+.++++|+.| .+.+.. ...+|..+..+++|++|++++|.++. ++..+..+++|++|++..+... ..+
T Consensus 260 ~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~--------~~l 330 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIED--------AGL 330 (594)
T ss_dssp HHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHH--------HHH
T ss_pred HHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCH--------HHH
Confidence 55555555555 333322 34456556678899999988877652 2233567888999886543111 111
Q ss_pred ccc-cccccCCCceEEcc--------CCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcC-CCCCC
Q 043039 708 DGL-RHMNHLRGSLKIRG--------LGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEAL-RPHPN 777 (949)
Q Consensus 708 ~~L-~~L~~L~~~l~i~~--------~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~ 777 (949)
..+ ..+++|+ .+.+.. +..++.. ........+++|+.|.+..+.+.+. .+..+ ..+++
T Consensus 331 ~~l~~~~~~L~-~L~L~~~~~~g~~~~~~l~~~--~l~~l~~~~~~L~~L~~~~~~l~~~---------~~~~l~~~~~~ 398 (594)
T 2p1m_B 331 EVLASTCKDLR-ELRVFPSEPFVMEPNVALTEQ--GLVSVSMGCPKLESVLYFCRQMTNA---------ALITIARNRPN 398 (594)
T ss_dssp HHHHHHCTTCC-EEEEECSCTTCSSCSSCCCHH--HHHHHHHHCTTCCEEEEEESCCCHH---------HHHHHHHHCTT
T ss_pred HHHHHhCCCCC-EEEEecCcccccccCCCCCHH--HHHHHHHhchhHHHHHHhcCCcCHH---------HHHHHHhhCCC
Confidence 111 1123343 555532 2222221 1112234589999998887776532 22222 24689
Q ss_pred cCceEEe--c----cccCCCCC------chhhcccCCcEEEEeccCCCC-CCCCCCC-CCCcceeeecCCCCcEEeCCcc
Q 043039 778 LESLQIS--F----YEVKARFP------NWILSLNKLRMLCLSFCKKCE-IMPPLGK-LQSLEVLDIWEMHGIKRVGDEV 843 (949)
Q Consensus 778 L~~L~L~--~----~~~~~~~p------~~~~~l~~L~~L~L~~~~~~~-~~~~l~~-l~~L~~L~L~~~~~l~~~~~~~ 843 (949)
|+.|+++ + +.++. .| ..+..+++|+.|+|++ .+.+ .++.++. +++|+.|+|++|. + ....
T Consensus 399 L~~L~L~~~~~~~~~~l~~-~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~-i---~~~~ 472 (594)
T 2p1m_B 399 MTRFRLCIIEPKAPDYLTL-EPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG-D---SDLG 472 (594)
T ss_dssp CCEEEEEESSTTCCCTTTC-CCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCC-S---SHHH
T ss_pred cceeEeecccCCCcccccC-CchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCC-C---cHHH
Confidence 9999999 3 33332 33 2355789999999976 2222 2223443 8999999998886 2 1111
Q ss_pred cCCCCCCCCccceeeeccccccccccccccccccccccceeccccCccCcCCCCCC-CCCCCcceEEEccCC
Q 043039 844 LGIEIIAFPRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKMLPDQV-LRSTTLKKLEINDCP 914 (949)
Q Consensus 844 ~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~c~ 914 (949)
.......+++|+.|++.+|+. .+... +.....+++|+.|+|++|+....-...+ ..++.|+...+....
T Consensus 473 ~~~l~~~~~~L~~L~L~~n~~-~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 473 MHHVLSGCDSLRKLEIRDCPF-GDKAL-LANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCSC-CHHHH-HHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred HHHHHhcCCCcCEEECcCCCC-cHHHH-HHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 110112589999999998764 32221 1234468999999999997622111111 245666655555443
No 104
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.49 E-value=1e-14 Score=159.13 Aligned_cols=146 Identities=14% Similarity=0.155 Sum_probs=75.5
Q ss_pred CceEEEEEeccCCCCcccccCCCCceEEEecCCCCCC--cchhhccCCceeEEEeCCccccccccccccccCCCCCCeee
Q 043039 542 KLRHSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQH--MPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLK 619 (949)
Q Consensus 542 ~~r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~--l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~ 619 (949)
.++.+.+.++.....+..+..+++|++|++++|.+.. ++..+..+++|+.|++++|.. ....|..++.+++|++|+
T Consensus 71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l--~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL--SDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBC--CHHHHHHHTTCTTCSEEE
T ss_pred cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCccc--CHHHHHHHhcCCCCCEEE
Confidence 3444444444433333344455666666666665542 455555666666666666541 123444555666666666
Q ss_pred eccc-CCc--ccchhhcCCCCCcEEeecCCCCCCc--cccccccCC-CCCeeeCCCcc--c--ccCCcCCCCCCCCcccC
Q 043039 620 LFFV-GIE--ELPETFCELFNLQNLDLRRCSKFKR--LPQNIGKLV-NLRHLIFDEDD--L--DYMPKGMGSLTGLRTLS 689 (949)
Q Consensus 620 L~~~-~i~--~lp~~l~~L~~L~~L~L~~~~~l~~--lp~~i~~L~-~L~~L~l~~~~--l--~~~p~~i~~l~~L~~L~ 689 (949)
+++| .++ .+|..+..+++|++|++++|..+.. +|..+..++ +|++|++++|. + ..+|..+..+++|+.|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 6666 454 2455555666666666666622432 455555566 66666655552 2 22333334444444444
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.49 E-value=5e-14 Score=149.50 Aligned_cols=183 Identities=19% Similarity=0.218 Sum_probs=119.5
Q ss_pred EecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccchhhcCCCCCcEEeecCCCCC
Q 043039 570 LIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPETFCELFNLQNLDLRRCSKF 649 (949)
Q Consensus 570 ~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L~~L~L~~~~~l 649 (949)
.+..+.+..+.. +..+++|+.|++++|. +..++. +..+++|++|++++|.++.+|. +..+++|++|++++|. +
T Consensus 30 ~l~~~~~~~~~~-~~~l~~L~~L~l~~~~---i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l 102 (291)
T 1h6t_A 30 NLKKKSVTDAVT-QNELNSIDQIIANNSD---IKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-V 102 (291)
T ss_dssp HTTCSCTTSEEC-HHHHHTCCEEECTTSC---CCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-C
T ss_pred HhcCCCcccccc-hhhcCcccEEEccCCC---cccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-C
Confidence 344444444333 4567888999999887 666654 8888999999999999888877 8889999999999887 6
Q ss_pred CccccccccCCCCCeeeCCCcccccCCcCCCCCCCCcccCccceecCCCccCCCccCcccccccccCCCceEEccCCCCC
Q 043039 650 KRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVT 729 (949)
Q Consensus 650 ~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~ 729 (949)
..+|. +..+++|++|++++|.+..++ .+..+++|+.|++..+ . +.
T Consensus 103 ~~~~~-l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n----~-----------------l~------------ 147 (291)
T 1h6t_A 103 KDLSS-LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN----K-----------------IT------------ 147 (291)
T ss_dssp CCGGG-GTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSS----C-----------------CC------------
T ss_pred CCChh-hccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCC----c-----------------CC------------
Confidence 66664 888889999998888887763 5666777777764321 1 10
Q ss_pred ChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhhcccCCcEEEEec
Q 043039 730 DVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWILSLNKLRMLCLSF 809 (949)
Q Consensus 730 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~ 809 (949)
.+ ..+..+++|+.|++++|.+.+. .. +..+++|+.|++++|.+.. +|. +..+++|+.|++++
T Consensus 148 ~~-----~~l~~l~~L~~L~L~~N~l~~~----------~~-l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 148 DI-----TVLSRLTKLDTLSLEDNQISDI----------VP-LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVLELFS 209 (291)
T ss_dssp CC-----GGGGGCTTCSEEECCSSCCCCC----------GG-GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCSEEEEEE
T ss_pred cc-----hhhccCCCCCEEEccCCccccc----------hh-hcCCCccCEEECCCCcCCC-Chh-hccCCCCCEEECcC
Confidence 00 1233455666666666655432 11 4455566666666665554 432 45555566666655
Q ss_pred cCC
Q 043039 810 CKK 812 (949)
Q Consensus 810 ~~~ 812 (949)
|.+
T Consensus 210 n~i 212 (291)
T 1h6t_A 210 QEC 212 (291)
T ss_dssp EEE
T ss_pred Ccc
Confidence 543
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.48 E-value=7.8e-14 Score=162.45 Aligned_cols=187 Identities=19% Similarity=0.211 Sum_probs=122.4
Q ss_pred EEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccchhhcCCCCCcEEeecCCC
Q 043039 568 SLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPETFCELFNLQNLDLRRCS 647 (949)
Q Consensus 568 ~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L~~L~L~~~~ 647 (949)
.+.+..+.+..+.. +..+++|+.|++++|. +..+| .+..+++|++|+|++|.+..+|+ +..+++|+.|+|++|.
T Consensus 25 ~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~---i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 25 KDNLKKKSVTDAVT-QNELNSIDQIIANNSD---IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK 98 (605)
T ss_dssp HHHTTCSCTTSEEC-HHHHTTCCCCBCTTCC---CCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred HHhccCCCcccccc-hhcCCCCCEEECcCCC---CCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC
Confidence 33344444444333 4556667777777766 55555 36677777777777777776665 6777777777777766
Q ss_pred CCCccccccccCCCCCeeeCCCcccccCCcCCCCCCCCcccCccceecCCCccCCCccCcccccccccCCCceEEccCCC
Q 043039 648 KFKRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKIRGLGN 727 (949)
Q Consensus 648 ~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~ 727 (949)
+..+| .+..+++|++|++++|.+..+| .+..+++|+.|++..| . +.
T Consensus 99 -l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N----~-----------------l~---------- 144 (605)
T 1m9s_A 99 -IKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN----K-----------------IT---------- 144 (605)
T ss_dssp -CCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSS----C-----------------CC----------
T ss_pred -CCCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCC----c-----------------cC----------
Confidence 55555 5677777777777777776653 4666666666664321 0 11
Q ss_pred CCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCCchhhcccCCcEEEE
Q 043039 728 VTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFPNWILSLNKLRMLCL 807 (949)
Q Consensus 728 l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L 807 (949)
.+ ..+..+++|+.|+|+.|.+.+. +. +..+++|+.|+|++|.+.+ +| .+..+++|+.|+|
T Consensus 145 --~l-----~~l~~l~~L~~L~Ls~N~l~~~----------~~-l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L 204 (605)
T 1m9s_A 145 --DI-----TVLSRLTKLDTLSLEDNQISDI----------VP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLEL 204 (605)
T ss_dssp --CC-----GGGGSCTTCSEEECCSSCCCCC----------GG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEC
T ss_pred --Cc-----hhhcccCCCCEEECcCCcCCCc----------hh-hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEc
Confidence 00 1245667888888888877653 12 6778888999998888877 54 5778888888988
Q ss_pred eccCCCC
Q 043039 808 SFCKKCE 814 (949)
Q Consensus 808 ~~~~~~~ 814 (949)
++|.+..
T Consensus 205 ~~N~l~~ 211 (605)
T 1m9s_A 205 FSQECLN 211 (605)
T ss_dssp CSEEEEC
T ss_pred cCCcCcC
Confidence 8887654
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.48 E-value=1.9e-13 Score=135.94 Aligned_cols=148 Identities=17% Similarity=0.186 Sum_probs=128.4
Q ss_pred cccCCceEEEEEeccCCCCcccccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCcccccccc-ccccccCCCCCC
Q 043039 538 ICYEKLRHSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIER-IPNGIEKLIHLR 616 (949)
Q Consensus 538 ~~~~~~r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~-lp~~i~~l~~L~ 616 (949)
..+..++.+.+.++.+..++ .+..+++|++|++++|.+..++ .+..+++|++|++++|. +.. .|..++.+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~---l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKD---VTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTT---CBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCc---cCcccChhhcCCCCCC
Confidence 34578899999998888777 7888999999999999887776 48889999999999988 554 577899999999
Q ss_pred eeeecccCCcc-cchhhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccccCCcCCCCCCCCcccCccc
Q 043039 617 YLKLFFVGIEE-LPETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEFV 692 (949)
Q Consensus 617 ~L~L~~~~i~~-lp~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~~ 692 (949)
+|++++|.+.. .|..++.+++|++|++++|..+..+| .+..+++|++|++++|.++.++ .+..+++|++|++..
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECB
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeC
Confidence 99999999985 67889999999999999998677787 6999999999999999999887 788899999998554
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=1.1e-13 Score=159.16 Aligned_cols=183 Identities=21% Similarity=0.235 Sum_probs=103.9
Q ss_pred CceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccchhhcCCCCCcEEeec
Q 043039 565 KLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPETFCELFNLQNLDLR 644 (949)
Q Consensus 565 ~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L~~L~L~ 644 (949)
+|+.|++++|.++.+|..+ +++|+.|+|++|. +..+| ..+++|++|++++|.++.+|. ++. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~---l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNA---LISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSC---CSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCC---Ccccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 5666666666655555433 2456666666665 44555 335566666666666666655 443 56666666
Q ss_pred CCCCCCccccccccCCCCCeeeCCCcccccCCcCCCCCCCCcccCccceecCCCccCCCccCcccccccccCCCceEEcc
Q 043039 645 RCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKIRG 724 (949)
Q Consensus 645 ~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~ 724 (949)
+|. +..+|. .+++|++|++++|.++.+|. .+++|+.|++..| . +. .
T Consensus 129 ~N~-l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N----~-----------------L~------~ 174 (571)
T 3cvr_A 129 NNQ-LTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN----Q-----------------LT------F 174 (571)
T ss_dssp SSC-CSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS----C-----------------CS------C
T ss_pred CCc-CCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC----C-----------------CC------C
Confidence 655 444554 45566666666666665554 3455555543221 0 00 0
Q ss_pred CCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCC-----CCCCcCceEEeccccCCCCCchhhcc
Q 043039 725 LGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALR-----PHPNLESLQISFYEVKARFPNWILSL 799 (949)
Q Consensus 725 ~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-----~~~~L~~L~L~~~~~~~~~p~~~~~l 799 (949)
++. +. ++|+.|++++|.+... +. +. .++.|+.|+|++|.+.. +|.++..+
T Consensus 175 lp~-----------l~--~~L~~L~Ls~N~L~~l----------p~-~~~~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l 229 (571)
T 3cvr_A 175 LPE-----------LP--ESLEALDVSTNLLESL----------PA-VPVRNHHSEETEIFFRCRENRITH-IPENILSL 229 (571)
T ss_dssp CCC-----------CC--TTCCEEECCSSCCSSC----------CC-CC--------CCEEEECCSSCCCC-CCGGGGGS
T ss_pred cch-----------hh--CCCCEEECcCCCCCch----------hh-HHHhhhcccccceEEecCCCccee-cCHHHhcC
Confidence 000 00 3555555555554421 11 11 12334889999988887 88888888
Q ss_pred cCCcEEEEeccCCCCCCC
Q 043039 800 NKLRMLCLSFCKKCEIMP 817 (949)
Q Consensus 800 ~~L~~L~L~~~~~~~~~~ 817 (949)
++|+.|+|++|.+.+..|
T Consensus 230 ~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 230 DPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CTTEEEECCSSSCCHHHH
T ss_pred CCCCEEEeeCCcCCCcCH
Confidence 899999999888766544
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=1.1e-13 Score=159.06 Aligned_cols=197 Identities=15% Similarity=0.176 Sum_probs=153.0
Q ss_pred CCceEEEEEeccCCCCcccccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeee
Q 043039 541 EKLRHSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKL 620 (949)
Q Consensus 541 ~~~r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L 620 (949)
.+++.+.+.++.+..+|..+ +++|++|++++|.++.+| ..+++|++|+|++|. +..+|. +.+ +|++|+|
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~---l~~ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNR---LSTLPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC---CSCCCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCC---CCCcch-hhc--CCCEEEC
Confidence 36778888888877777766 378999999999999988 457899999999998 777888 665 9999999
Q ss_pred cccCCcccchhhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccccCCcCCCCCCCCcccCccceecCCCcc
Q 043039 621 FFVGIEELPETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEFVAVSGGGKY 700 (949)
Q Consensus 621 ~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~ 700 (949)
++|.++.+|. .+++|++|++++|. +..+|. .+++|++|++++|.++.+|. +. ++|+.|++..| .
T Consensus 128 s~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N----~-- 191 (571)
T 3cvr_A 128 DNNQLTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTN----L-- 191 (571)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSS----C--
T ss_pred CCCcCCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCC----C--
Confidence 9999999988 68999999999998 777887 67899999999999999998 76 88999985542 1
Q ss_pred CCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCc
Q 043039 701 GSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLES 780 (949)
Q Consensus 701 ~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 780 (949)
+. .++.+.. ......+.|+.|++++|.+.. ++..+..+++|+.
T Consensus 192 ------L~---~lp~~~~------------------~L~~~~~~L~~L~Ls~N~l~~----------lp~~l~~l~~L~~ 234 (571)
T 3cvr_A 192 ------LE---SLPAVPV------------------RNHHSEETEIFFRCRENRITH----------IPENILSLDPTCT 234 (571)
T ss_dssp ------CS---SCCCCC--------------------------CCEEEECCSSCCCC----------CCGGGGGSCTTEE
T ss_pred ------CC---chhhHHH------------------hhhcccccceEEecCCCccee----------cCHHHhcCCCCCE
Confidence 00 0110000 001233456999999998874 4556666899999
Q ss_pred eEEeccccCCCCCchhhcccC
Q 043039 781 LQISFYEVKARFPNWILSLNK 801 (949)
Q Consensus 781 L~L~~~~~~~~~p~~~~~l~~ 801 (949)
|+|++|.+.+.+|..+..+..
T Consensus 235 L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 235 IILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp EECCSSSCCHHHHHHHHHHHH
T ss_pred EEeeCCcCCCcCHHHHHHhhc
Confidence 999999998878888776543
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.47 E-value=1.4e-13 Score=160.21 Aligned_cols=175 Identities=19% Similarity=0.230 Sum_probs=140.0
Q ss_pred ccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccchhhcCCCCCc
Q 043039 560 IFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPETFCELFNLQ 639 (949)
Q Consensus 560 ~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L~ 639 (949)
+..+++|+.|++++|.+..++. +..+++|+.|+|++|. +..+|. +..+++|++|+|++|.+..+| .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~---l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNK---LTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTSC---CCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCChH-HccCCCCCEEEeeCCC---CCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCC
Confidence 3567888999999998888875 7889999999999988 777766 889999999999999998876 688999999
Q ss_pred EEeecCCCCCCccccccccCCCCCeeeCCCcccccCCcCCCCCCCCcccCccceecCCCccCCCccCcccccccccCCCc
Q 043039 640 NLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGS 719 (949)
Q Consensus 640 ~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~ 719 (949)
.|+|++|. +..+| .+..+++|+.|++++|.+..+ ..++.+++|+.|++..| . +.
T Consensus 113 ~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N----~-----------------l~-- 166 (605)
T 1m9s_A 113 SLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN----Q-----------------IS-- 166 (605)
T ss_dssp EEECTTSC-CCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS----C-----------------CC--
T ss_pred EEEecCCC-CCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC----c-----------------CC--
Confidence 99999988 66665 588999999999999998887 56788888888875431 1 11
Q ss_pred eEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCC
Q 043039 720 LKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFP 793 (949)
Q Consensus 720 l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p 793 (949)
.. ..+..+++|+.|+|+.|.+.+. ..+..+++|+.|+|++|.+.. .|
T Consensus 167 ----------~~-----~~l~~l~~L~~L~Ls~N~i~~l-----------~~l~~l~~L~~L~L~~N~l~~-~p 213 (605)
T 1m9s_A 167 ----------DI-----VPLAGLTKLQNLYLSKNHISDL-----------RALAGLKNLDVLELFSQECLN-KP 213 (605)
T ss_dssp ----------CC-----GGGTTCTTCCEEECCSSCCCBC-----------GGGTTCTTCSEEECCSEEEEC-CC
T ss_pred ----------Cc-----hhhccCCCCCEEECcCCCCCCC-----------hHHccCCCCCEEEccCCcCcC-Cc
Confidence 00 0145678999999999987642 357788999999999999877 44
No 111
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.46 E-value=1.2e-14 Score=159.90 Aligned_cols=237 Identities=13% Similarity=0.100 Sum_probs=160.4
Q ss_pred cccccCCCCceEEEecCCCCCCcc-----hhhccCC-ceeEEEeCCccccccccc-cccccCC-----CCCCeeeecccC
Q 043039 557 PVSIFNAKKLRSLLIQGYSLQHMP-----SFFDQLT-CLRALRIGKYGDDAIERI-PNGIEKL-----IHLRYLKLFFVG 624 (949)
Q Consensus 557 ~~~~~~~~~Lr~L~l~~~~l~~l~-----~~~~~l~-~Lr~L~L~~~~~~~~~~l-p~~i~~l-----~~L~~L~L~~~~ 624 (949)
|..+...++|++|++++|.+...+ ..|..++ +|+.|+|++|. +... +..+..+ ++|++|+|++|.
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~---l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS---LGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC---GGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC---CCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 334445566999999999988664 5678888 89999999998 5443 4445554 899999999999
Q ss_pred Ccccch-h----hcCC-CCCcEEeecCCCCCCccc-ccc----cc-CCCCCeeeCCCcccc-----cCCcCCCCCC-CCc
Q 043039 625 IEELPE-T----FCEL-FNLQNLDLRRCSKFKRLP-QNI----GK-LVNLRHLIFDEDDLD-----YMPKGMGSLT-GLR 686 (949)
Q Consensus 625 i~~lp~-~----l~~L-~~L~~L~L~~~~~l~~lp-~~i----~~-L~~L~~L~l~~~~l~-----~~p~~i~~l~-~L~ 686 (949)
+...+. . +..+ ++|++|++++|. +...+ ..+ .. .++|++|++++|.++ .++..+..+. +|+
T Consensus 92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 170 (362)
T 3goz_A 92 LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcccc
Confidence 886543 2 4555 899999999998 54443 233 33 369999999999887 3344445554 788
Q ss_pred ccCccceecCCCccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCC-CCCCeEEEEecCCCCcchhhhcH
Q 043039 687 TLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKK-KNLISLELEFDKEEEEDEDEVNH 765 (949)
Q Consensus 687 ~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~ 765 (949)
+|++..| . +. ..........+..+ ++|+.|++++|.+.+. +.
T Consensus 171 ~L~Ls~n----~-----------------l~-----------~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~-----~~ 213 (362)
T 3goz_A 171 SLNLRGN----N-----------------LA-----------SKNCAELAKFLASIPASVTSLDLSANLLGLK-----SY 213 (362)
T ss_dssp EEECTTS----C-----------------GG-----------GSCHHHHHHHHHTSCTTCCEEECTTSCGGGS-----CH
T ss_pred EeeecCC----C-----------------Cc-----------hhhHHHHHHHHHhCCCCCCEEECCCCCCChh-----HH
Confidence 8774431 1 00 00011112234455 5899999999887643 23
Q ss_pred HHHhhcCCC-CCCcCceEEeccccCCCCC----chhhcccCCcEEEEeccCCCCC--------CCCCCCCCCcceeeecC
Q 043039 766 QAIIEALRP-HPNLESLQISFYEVKARFP----NWILSLNKLRMLCLSFCKKCEI--------MPPLGKLQSLEVLDIWE 832 (949)
Q Consensus 766 ~~~~~~l~~-~~~L~~L~L~~~~~~~~~p----~~~~~l~~L~~L~L~~~~~~~~--------~~~l~~l~~L~~L~L~~ 832 (949)
..++..+.. +++|+.|+|++|.+....+ ..+..+++|+.|+|++|.+... ...+..+++|+.|++++
T Consensus 214 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 214 AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC
Confidence 345555554 4689999999998877322 2335678999999999973322 12366788888888877
Q ss_pred CC
Q 043039 833 MH 834 (949)
Q Consensus 833 ~~ 834 (949)
+.
T Consensus 294 N~ 295 (362)
T 3goz_A 294 KE 295 (362)
T ss_dssp CB
T ss_pred Cc
Confidence 65
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.44 E-value=8.6e-14 Score=145.16 Aligned_cols=57 Identities=25% Similarity=0.212 Sum_probs=28.6
Q ss_pred CCCcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCCCCCCCCCCCCcceeeecCCC
Q 043039 775 HPNLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMPPLGKLQSLEVLDIWEMH 834 (949)
Q Consensus 775 ~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~ 834 (949)
+++|+.|++++|.+.+ +| .+..+++|+.|+|++|.+... +.+..+++|+.|+++++.
T Consensus 127 l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 127 LKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred cccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 3444444444444444 33 344555555555555554433 445555556666555443
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.42 E-value=6.5e-13 Score=133.48 Aligned_cols=109 Identities=32% Similarity=0.556 Sum_probs=55.2
Q ss_pred CCceEEEecCCCCCCcch-hhccCCceeEEEeCCcccccccccccc-ccCCCCCCeeeecccCCcccchh-hcCCCCCcE
Q 043039 564 KKLRSLLIQGYSLQHMPS-FFDQLTCLRALRIGKYGDDAIERIPNG-IEKLIHLRYLKLFFVGIEELPET-FCELFNLQN 640 (949)
Q Consensus 564 ~~Lr~L~l~~~~l~~l~~-~~~~l~~Lr~L~L~~~~~~~~~~lp~~-i~~l~~L~~L~L~~~~i~~lp~~-l~~L~~L~~ 640 (949)
++|++|++++|.++.++. .|..+++|++|++++|. +..+|.. +..+++|++|++++|.++.+|.. +..+++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK---LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKE 104 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc---cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCE
Confidence 355555555555554433 34555555555555554 4444332 34555555555555555555433 345555555
Q ss_pred EeecCCCCCCccccc-cccCCCCCeeeCCCcccccCC
Q 043039 641 LDLRRCSKFKRLPQN-IGKLVNLRHLIFDEDDLDYMP 676 (949)
Q Consensus 641 L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~~p 676 (949)
|++++|. +..+|.. +..+++|++|++++|.++.+|
T Consensus 105 L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 140 (208)
T 2o6s_A 105 LALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVP 140 (208)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred EEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeC
Confidence 5555554 3333332 345555555555555444443
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.41 E-value=9.8e-13 Score=134.10 Aligned_cols=143 Identities=26% Similarity=0.413 Sum_probs=119.7
Q ss_pred EEEEEeccCCCCcccccCCCCceEEEecCCCCCCc-chhhccCCceeEEEeCCcccccccccccc-ccCCCCCCeeeecc
Q 043039 545 HSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHM-PSFFDQLTCLRALRIGKYGDDAIERIPNG-IEKLIHLRYLKLFF 622 (949)
Q Consensus 545 ~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l-~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~-i~~l~~L~~L~L~~ 622 (949)
.+...++....+|..+. ++|+.|++++|.+..+ +..|..+++|++|+|++|. +..+|.. +..+++|++|+|++
T Consensus 23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~---l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ---LGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCS
T ss_pred EeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC---CCCcChhhcccCCCcCEEECCC
Confidence 34444455566666553 8899999999999887 6678899999999999998 7777754 68999999999999
Q ss_pred cCCcccchh-hcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccccCCc-CCCCCCCCcccCccce
Q 043039 623 VGIEELPET-FCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPK-GMGSLTGLRTLSEFVA 693 (949)
Q Consensus 623 ~~i~~lp~~-l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~-~i~~l~~L~~L~~~~~ 693 (949)
|.++.+|.. +..+++|++|+|++|. +..+|..+..+++|++|++++|.++.+|. .+..+++|+.|++..|
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 999988765 6889999999999988 77999999999999999999999998885 4788999999986553
No 115
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.41 E-value=1.2e-11 Score=137.75 Aligned_cols=298 Identities=13% Similarity=0.048 Sum_probs=181.7
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccc-cceEEEEEeCCCCCHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNN-FNVMIWVCVSDPFDVFRVWKAI 252 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i 252 (949)
+.++||+.+++++.+++.....+..+..+.+.|+|++|+||||+|+.+++.. ... -..++|++++...+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY--KDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH--TTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH--hhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 6799999999999999865321112233489999999999999999998752 222 1357788888888888999999
Q ss_pred HHhcCCCCCC-CcchHHHHHHHHhhhC--CceEEEEEeCCCCCCcccHHHHHHhhhccC----CCcEEEEEccchhhHhh
Q 043039 253 IENLDGYTPD-LGELNTLHQLINNRIG--GKKVLLVLDDVWTEDGNKWESFQRCLINAH----RGSKILVTTRKETVARM 325 (949)
Q Consensus 253 ~~~l~~~~~~-~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~iivTtr~~~v~~~ 325 (949)
+..++...+. ......+.+.+.+.+. +++.+||||+++..+......+...+.... .+..||++|+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 9988654332 2234455555555543 668999999997765555555655553211 46678888876543322
Q ss_pred hc-------CcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhc---------CCCchHHHHHHhhhc-
Q 043039 326 IG-------STCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKC---------KGLPLAVKTIGSLLR- 388 (949)
Q Consensus 326 ~~-------~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~Plal~~~~~~l~- 388 (949)
+. ....+.+.+++.++..+++...+...... ..-..+..+.|++.+ +|.|..+..+.....
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAE--GSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCT--TSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 21 12369999999999999998876431110 111245567778888 788755544332211
Q ss_pred -----cC--CCHHHHHHHHhhhccchhhhccchHHHHHhccCCCChhHHHHHhhhcccC---CCcccChhhHHHHHHH--
Q 043039 389 -----FK--KAREEWQSILDSEIWQVEEFEKNLLPALLLSYNDLPNEIKRCFSYCAVLP---KECYVDRDELIKLWMA-- 456 (949)
Q Consensus 389 -----~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~a~fp---~~~~i~~~~li~~w~a-- 456 (949)
.. -+.+....+..... .. .+.-.+..|+.+.+.++..++.+. .+..+....+...+..
T Consensus 253 ~a~~~~~~~i~~~~v~~~~~~~~------~~----~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 322 (389)
T 1fnn_A 253 AAQQNGRKHIAPEDVRKSSKEVL------FG----ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVC 322 (389)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHS------CC----CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHH
T ss_pred HHHHhCCCCcCHHHHHHHHHHHh------hh----hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHH
Confidence 11 12233332222110 01 112234567888887777676543 2213444555444332
Q ss_pred --cCccccCCChhhhhHHHHHHHHHHHHHHhccCcccccc
Q 043039 457 --QGYIDQKGNKEMEMEMEMVGERYFDLLAKRSFFQEFEK 494 (949)
Q Consensus 457 --eg~i~~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~ 494 (949)
.|.... . ......++++|...+++.....
T Consensus 323 ~~~~~~~~-~--------~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 323 EEYGERPR-V--------HSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HHTTCCCC-C--------HHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHcCCCCC-C--------HHHHHHHHHHHHhCCCeEEeee
Confidence 221110 1 3345678999999999988654
No 116
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.40 E-value=6.3e-11 Score=131.78 Aligned_cols=296 Identities=13% Similarity=0.031 Sum_probs=178.2
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccc----cccceEEEEEeCCCCCHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVS----NNFNVMIWVCVSDPFDVFRVW 249 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~ 249 (949)
..++||+++++++..++..... ....+.+.|+|++|+||||+|+.+++..... +.-..++|+++....+...++
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 6799999999999999854321 1234678999999999999999998753111 112356788888888999999
Q ss_pred HHHHHhcCCCCCCC-cchHHHHHHHHhhh--CCceEEEEEeCCCCCCcc--cHHHHHHhhhcc-----CCCcEEEEEccc
Q 043039 250 KAIIENLDGYTPDL-GELNTLHQLINNRI--GGKKVLLVLDDVWTEDGN--KWESFQRCLINA-----HRGSKILVTTRK 319 (949)
Q Consensus 250 ~~i~~~l~~~~~~~-~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~~~--~~~~l~~~l~~~-----~~gs~iivTtr~ 319 (949)
..++.+++...+.. .....+...+.+.+ .+++.+||||+++..... ..+.+...+... ..+..+|.||+.
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 99999987643322 23455556666666 356899999999653221 223333333211 445678888876
Q ss_pred hhhHh----hh-cC--cceEeCCCCChHhHHHHHHHHhhcc-CCCCCchhHHHHHHHHHHhcC---CCchH-HHHHHhhh
Q 043039 320 ETVAR----MI-GS--TCVISIEELSEPECWSLFKRFAFLN-RSRSDCKQLEEIGRKITWKCK---GLPLA-VKTIGSLL 387 (949)
Q Consensus 320 ~~v~~----~~-~~--~~~~~l~~l~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~---g~Pla-l~~~~~~l 387 (949)
..... .. .. ...+.+.+++.++..+++...+... ...... .+..+.+++.++ |.|.. +..+....
T Consensus 177 ~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 177 LGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp STTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 53211 11 11 1478999999999999999886421 111111 223455666676 99943 33332222
Q ss_pred c-----cC--CCHHHHHHHHhhhccchhhhccchHHHHHhccCCCChhHHHHHhhhc-ccCCCcccChhhHHHHHHH---
Q 043039 388 R-----FK--KAREEWQSILDSEIWQVEEFEKNLLPALLLSYNDLPNEIKRCFSYCA-VLPKECYVDRDELIKLWMA--- 456 (949)
Q Consensus 388 ~-----~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~a-~fp~~~~i~~~~li~~w~a--- 456 (949)
. .. -+.+.+..++.... ...+.-++..|+.+.+..+..++ ++.....+....+.+....
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTS 323 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 1 11 24566666554321 12345567788988877766665 3332223444433333221
Q ss_pred -cCccccCCChhhhhHHHHHHHHHHHHHHhccCccccc
Q 043039 457 -QGYIDQKGNKEMEMEMEMVGERYFDLLAKRSFFQEFE 493 (949)
Q Consensus 457 -eg~i~~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~ 493 (949)
.| .... . ......+++.|...+++....
T Consensus 324 ~~~-~~~~-~-------~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 324 TLG-LEHV-T-------LRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HTT-CCCC-C-------HHHHHHHHHHHHHTTSEEEEE
T ss_pred hcC-CCCC-C-------HHHHHHHHHHHHhCCCeEEEe
Confidence 22 1111 1 345677899999999998754
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.40 E-value=9.4e-13 Score=133.24 Aligned_cols=143 Identities=22% Similarity=0.279 Sum_probs=117.4
Q ss_pred EEEEEeccCCCCcccccCCCCceEEEecCCCCCCcch-hhccCCceeEEEeCCccccccccc-cccccCCCCCCeeeecc
Q 043039 545 HSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMPS-FFDQLTCLRALRIGKYGDDAIERI-PNGIEKLIHLRYLKLFF 622 (949)
Q Consensus 545 ~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~~-~~~~l~~Lr~L~L~~~~~~~~~~l-p~~i~~l~~L~~L~L~~ 622 (949)
.+...++....+|..+. ++|+.|++++|.+..++. .|..+++|+.|+|++|. +..+ |..+.++++|++|+|++
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~---i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ---ISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC---CCEECTTTTTTCSSCCEEECCS
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc---CCCcCHHHhhCCcCCCEEECCC
Confidence 34444455566666553 689999999999988765 68899999999999998 6666 67899999999999999
Q ss_pred cCCcccchh-hcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccccCCcC-CCCCCCCcccCccc
Q 043039 623 VGIEELPET-FCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKG-MGSLTGLRTLSEFV 692 (949)
Q Consensus 623 ~~i~~lp~~-l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~-i~~l~~L~~L~~~~ 692 (949)
|.++.+|.. +..+++|++|+|++|......|..+..+++|++|++++|.++.+|.. +..+++|+.|++..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence 999999876 57899999999999984444467789999999999999999988764 88899999988655
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.40 E-value=4.6e-15 Score=171.83 Aligned_cols=196 Identities=15% Similarity=0.137 Sum_probs=116.0
Q ss_pred cCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccc-----------cccccccccccCCCCCCeee-ecccCCccc
Q 043039 561 FNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGD-----------DAIERIPNGIEKLIHLRYLK-LFFVGIEEL 628 (949)
Q Consensus 561 ~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~-----------~~~~~lp~~i~~l~~L~~L~-L~~~~i~~l 628 (949)
..+++|+.|++++|.++.+|..+..|++|+.|++++|.. .....+|..++.+++|+.|+ ++.+.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 456777777777777777777777777777777755530 01233455566666666666 444433322
Q ss_pred ch------hhcC--CCCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccccCCcCCCCCCCCcccCccceecCCCcc
Q 043039 629 PE------TFCE--LFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEFVAVSGGGKY 700 (949)
Q Consensus 629 p~------~l~~--L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~ 700 (949)
+. .+.. ...|++|+|++|. +..+|. ++.+++|++|++++|.++.+|..++.+++|+.|+
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~----------- 492 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQ----------- 492 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEE-----------
T ss_pred hhhhhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEE-----------
Confidence 21 1111 1246666666665 555664 6666666666666666666666565555555555
Q ss_pred CCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCc
Q 043039 701 GSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLES 780 (949)
Q Consensus 701 ~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 780 (949)
+++|.+.+ ++ .+..+++|+.
T Consensus 493 -------------------------------------------------Ls~N~l~~----------lp-~l~~l~~L~~ 512 (567)
T 1dce_A 493 -------------------------------------------------ASDNALEN----------VD-GVANLPRLQE 512 (567)
T ss_dssp -------------------------------------------------CCSSCCCC----------CG-GGTTCSSCCE
T ss_pred -------------------------------------------------CCCCCCCC----------Cc-ccCCCCCCcE
Confidence 33333221 12 3445667777
Q ss_pred eEEeccccCCCC-CchhhcccCCcEEEEeccCCCCCCCCCC----CCCCcceee
Q 043039 781 LQISFYEVKARF-PNWILSLNKLRMLCLSFCKKCEIMPPLG----KLQSLEVLD 829 (949)
Q Consensus 781 L~L~~~~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~~~l~----~l~~L~~L~ 829 (949)
|+|++|.+.+.. |..+..+++|+.|+|++|.+...++... .+|+|+.|+
T Consensus 513 L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp EECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred EECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 777777776632 7777777777777777777665555432 256666664
No 119
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.39 E-value=3.3e-11 Score=133.84 Aligned_cols=295 Identities=12% Similarity=0.026 Sum_probs=177.4
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCccccc----c--cceEEEEEeCCCC-CHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSN----N--FNVMIWVCVSDPF-DVF 246 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~--f~~~~wv~~~~~~-~~~ 246 (949)
..++||+++++++.+++..... ....+.+.|+|++|+||||+|+.+++...... . ...++|+++.... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 6799999999999988864221 12346899999999999999999987521110 1 3457788887766 888
Q ss_pred HHHHHHHHhcCCCCC--CCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHH-HHhhhccCCCcEEEEEccchhhH
Q 043039 247 RVWKAIIENLDGYTP--DLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESF-QRCLINAHRGSKILVTTRKETVA 323 (949)
Q Consensus 247 ~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l-~~~l~~~~~gs~iivTtr~~~v~ 323 (949)
.++..++.++.+... ...........+.+.+..++.+|||||++......+... ...+.....+..||+||+.....
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTT
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchH
Confidence 888898888743221 122345566777777777666999999965321111222 33333322677899999875321
Q ss_pred ----hhh-cC-cceEeCCCCChHhHHHHHHHHhhcc-CCCCCchhHHHHHHHHHHhcC---CCch-HHHHHHhhh--c-c
Q 043039 324 ----RMI-GS-TCVISIEELSEPECWSLFKRFAFLN-RSRSDCKQLEEIGRKITWKCK---GLPL-AVKTIGSLL--R-F 389 (949)
Q Consensus 324 ----~~~-~~-~~~~~l~~l~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~---g~Pl-al~~~~~~l--~-~ 389 (949)
..+ .. ...+.+.+++.++..++|..++... ...... .+..+.|++.++ |.|. |+..+.... . .
T Consensus 178 ~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~ 254 (384)
T 2qby_B 178 DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLASG 254 (384)
T ss_dssp TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTS
T ss_pred hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcC
Confidence 111 11 2389999999999999999886421 111111 234455666676 8887 444333322 1 1
Q ss_pred --CCCHHHHHHHHhhhccchhhhccchHHHHHhccCCCChhHHHHHhhhcccCCC-cccChhhHHHHHHHcCccccCCCh
Q 043039 390 --KKAREEWQSILDSEIWQVEEFEKNLLPALLLSYNDLPNEIKRCFSYCAVLPKE-CYVDRDELIKLWMAQGYIDQKGNK 466 (949)
Q Consensus 390 --~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~a~fp~~-~~i~~~~li~~w~aeg~i~~~~~~ 466 (949)
.-+.+.+..++.... ...+.-++..|+.+.+..+..++. ... ..+. ......--..| .... .
T Consensus 255 ~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~-~~~~~~~~-~~~~~~~~~~g-~~~~-~- 319 (384)
T 2qby_B 255 GGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIE-SEDVMSAH-KMYTDLCNKFK-QKPL-S- 319 (384)
T ss_dssp SSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHT-CCBHHHHH-HHHHHHHHHTT-CCCC-C-
T ss_pred CCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHH-hcccChHH-HHHHHHHHHcC-CCCC-C-
Confidence 125666666655421 134556678888888877766665 211 1110 01111111122 1111 1
Q ss_pred hhhhHHHHHHHHHHHHHHhccCcccccc
Q 043039 467 EMEMEMEMVGERYFDLLAKRSFFQEFEK 494 (949)
Q Consensus 467 ~~~~~~~~~~~~~l~~L~~~sll~~~~~ 494 (949)
......++..|...+++.....
T Consensus 320 ------~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 320 ------YRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp ------HHHHHHHHHHHHHTTSEEEEEE
T ss_pred ------HHHHHHHHHHHHhCCCEEEEec
Confidence 3445678999999999987543
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.37 E-value=2.1e-12 Score=130.66 Aligned_cols=144 Identities=18% Similarity=0.188 Sum_probs=119.2
Q ss_pred eEEEEEeccCCCCcccccCCCCceEEEecCCCCCCcc--hhhccCCceeEEEeCCccccccccccc-cccCCCCCCeeee
Q 043039 544 RHSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMP--SFFDQLTCLRALRIGKYGDDAIERIPN-GIEKLIHLRYLKL 620 (949)
Q Consensus 544 r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~--~~~~~l~~Lr~L~L~~~~~~~~~~lp~-~i~~l~~L~~L~L 620 (949)
+.+.+.++....+|..+ ...++.|++++|.++.++ ..|..+++|+.|+|++|. +..++. .+.++++|++|+|
T Consensus 14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~---i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK---ITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEEC
T ss_pred CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc---CCEECHHHhCCCCCCCEEEC
Confidence 45666666677777655 346789999999998873 358899999999999998 777765 6999999999999
Q ss_pred cccCCcccchh-hcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccccC-CcCCCCCCCCcccCccc
Q 043039 621 FFVGIEELPET-FCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYM-PKGMGSLTGLRTLSEFV 692 (949)
Q Consensus 621 ~~~~i~~lp~~-l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~-p~~i~~l~~L~~L~~~~ 692 (949)
++|.++.+|.. +..+++|++|+|++|......|..+..+++|++|++++|.++.+ |..+..+++|+.|++..
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence 99999988754 88999999999999984444477899999999999999999988 67789999999998655
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.36 E-value=6.8e-13 Score=125.37 Aligned_cols=123 Identities=21% Similarity=0.233 Sum_probs=103.4
Q ss_pred CCCceEEEecCCCCC--CcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcc-cchhhcCCCCCc
Q 043039 563 AKKLRSLLIQGYSLQ--HMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEE-LPETFCELFNLQ 639 (949)
Q Consensus 563 ~~~Lr~L~l~~~~l~--~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~-lp~~l~~L~~L~ 639 (949)
.++|+.|++++|.+. .+|..+..+++|++|++++|. +..+ ..++.+++|++|++++|.+.. +|..+..+++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~---l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG---LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC---CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC---CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 477899999999887 778777888999999999887 6666 668889999999999999887 777777899999
Q ss_pred EEeecCCCCCCccc--cccccCCCCCeeeCCCcccccCCc----CCCCCCCCcccCc
Q 043039 640 NLDLRRCSKFKRLP--QNIGKLVNLRHLIFDEDDLDYMPK----GMGSLTGLRTLSE 690 (949)
Q Consensus 640 ~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~l~~~p~----~i~~l~~L~~L~~ 690 (949)
+|++++|. +..+| ..++.+++|++|++++|.++.+|. .++.+++|+.|++
T Consensus 92 ~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 92 HLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred EEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 99999988 66654 788899999999999999888876 5778888888874
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.36 E-value=1.1e-12 Score=126.72 Aligned_cols=125 Identities=20% Similarity=0.226 Sum_probs=92.4
Q ss_pred CCCceEEEecCCCCC--CcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcc-cchhhcCCCCCc
Q 043039 563 AKKLRSLLIQGYSLQ--HMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEE-LPETFCELFNLQ 639 (949)
Q Consensus 563 ~~~Lr~L~l~~~~l~--~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~-lp~~l~~L~~L~ 639 (949)
.++|+.|++++|.+. .+|..+..+++|++|++++|. +..+ ..++.+++|++|++++|.+.. +|..+..+++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~---l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG---LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC---CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC---CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 467778888887776 677766777788888888777 5555 557777888888888888776 666666678888
Q ss_pred EEeecCCCCCCccc--cccccCCCCCeeeCCCcccccCCc----CCCCCCCCcccCccc
Q 043039 640 NLDLRRCSKFKRLP--QNIGKLVNLRHLIFDEDDLDYMPK----GMGSLTGLRTLSEFV 692 (949)
Q Consensus 640 ~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~l~~~p~----~i~~l~~L~~L~~~~ 692 (949)
+|++++|. +..+| ..+..+++|++|++++|.++.+|. .+..+++|+.|++..
T Consensus 99 ~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 99 HLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp EEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred EEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 88888776 66655 567777888888888777777775 577777777777544
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=1.3e-12 Score=127.32 Aligned_cols=129 Identities=20% Similarity=0.202 Sum_probs=112.0
Q ss_pred cccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccchhh-cCCCC
Q 043039 559 SIFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPETF-CELFN 637 (949)
Q Consensus 559 ~~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l-~~L~~ 637 (949)
.+.++.+|+.|++++|.++.++......++|++|++++|. +..+ ..++.+++|++|++++|.++.+|+.+ ..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~---l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE---IRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC---CCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCC---CCcc-cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 4567899999999999999887744445599999999998 6666 56899999999999999999998665 89999
Q ss_pred CcEEeecCCCCCCcccc--ccccCCCCCeeeCCCcccccCCcC----CCCCCCCcccCccc
Q 043039 638 LQNLDLRRCSKFKRLPQ--NIGKLVNLRHLIFDEDDLDYMPKG----MGSLTGLRTLSEFV 692 (949)
Q Consensus 638 L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~l~~~p~~----i~~l~~L~~L~~~~ 692 (949)
|++|++++|. +..+|. .+..+++|++|++++|.+..+|.. +..+++|+.|++..
T Consensus 90 L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 90 LTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp CCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred CCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCc
Confidence 9999999998 788887 789999999999999999988875 88899999998654
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.36 E-value=1.3e-12 Score=126.25 Aligned_cols=133 Identities=21% Similarity=0.159 Sum_probs=118.7
Q ss_pred CCceEEEEEeccCC--CCcccccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCcccccccc-ccccccCCCCCCe
Q 043039 541 EKLRHSILVLHYNA--SFPVSIFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIER-IPNGIEKLIHLRY 617 (949)
Q Consensus 541 ~~~r~l~l~~~~~~--~l~~~~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~-lp~~i~~l~~L~~ 617 (949)
..++.+.+.++... .+|..+..+++|+.|++++|.+..+ ..+..+++|++|++++|. +.. +|..+..+++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENR---IFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCC---CCSCCCHHHHHCTTCCE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCc---CchHHHHHHhhCCCCCE
Confidence 67899999998877 7788888999999999999999888 668899999999999998 666 7777778999999
Q ss_pred eeecccCCcccc--hhhcCCCCCcEEeecCCCCCCcccc----ccccCCCCCeeeCCCcccccCCcC
Q 043039 618 LKLFFVGIEELP--ETFCELFNLQNLDLRRCSKFKRLPQ----NIGKLVNLRHLIFDEDDLDYMPKG 678 (949)
Q Consensus 618 L~L~~~~i~~lp--~~l~~L~~L~~L~L~~~~~l~~lp~----~i~~L~~L~~L~l~~~~l~~~p~~ 678 (949)
|++++|.++.+| ..+..+++|++|++++|. +..+|. .+..+++|++|++..|.+..+|.+
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 999999999987 789999999999999998 777776 789999999999999988888754
No 125
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.34 E-value=3.2e-12 Score=127.00 Aligned_cols=126 Identities=13% Similarity=0.169 Sum_probs=111.2
Q ss_pred cCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcc-cchhhcCCCCCc
Q 043039 561 FNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEE-LPETFCELFNLQ 639 (949)
Q Consensus 561 ~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~-lp~~l~~L~~L~ 639 (949)
..+++|+.|++++|.+..+| .+..+++|++|++++|. +..++ .+..+++|++|++++|.+.. .|..++.+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~---~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH---ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC---CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC---CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 56789999999999999988 58999999999999996 66654 68999999999999999985 688899999999
Q ss_pred EEeecCCCCCCccccccccCCCCCeeeCCCcc-cccCCcCCCCCCCCcccCccc
Q 043039 640 NLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDD-LDYMPKGMGSLTGLRTLSEFV 692 (949)
Q Consensus 640 ~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~-l~~~p~~i~~l~~L~~L~~~~ 692 (949)
+|++++|......|..++.+++|++|++++|. ++.+| .+..+++|+.|++..
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~ 168 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQF 168 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTT
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCC
Confidence 99999998555678889999999999999997 88887 688899999998543
No 126
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.34 E-value=2.7e-12 Score=128.94 Aligned_cols=119 Identities=24% Similarity=0.404 Sum_probs=88.9
Q ss_pred eEEEecCCCCCCcchhhccCCceeEEEeCCcccccccccccc-ccCCCCCCeeeecccCCcccchh-hcCCCCCcEEeec
Q 043039 567 RSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNG-IEKLIHLRYLKLFFVGIEELPET-FCELFNLQNLDLR 644 (949)
Q Consensus 567 r~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~-i~~l~~L~~L~L~~~~i~~lp~~-l~~L~~L~~L~L~ 644 (949)
+.+++.++.+..+|..+ .++|+.|++++|. +..+|.. +..+++|++|++++|.++.+|.. +..+++|++|+++
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNS---LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCc---cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 45666777777776533 4578888888887 6666553 67888888888888888888754 5788888888888
Q ss_pred CCCCCCccccc-cccCCCCCeeeCCCcccccCCcC-CCCCCCCcccCcc
Q 043039 645 RCSKFKRLPQN-IGKLVNLRHLIFDEDDLDYMPKG-MGSLTGLRTLSEF 691 (949)
Q Consensus 645 ~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~~p~~-i~~l~~L~~L~~~ 691 (949)
+|. +..+|.. +..+++|++|++++|.++.+|.. +..+++|++|++.
T Consensus 85 ~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (208)
T 2o6s_A 85 TNQ-LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY 132 (208)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCc-CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECC
Confidence 887 5566644 57888888888888888877654 5677777777643
No 127
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.32 E-value=6.4e-12 Score=130.91 Aligned_cols=142 Identities=15% Similarity=0.158 Sum_probs=113.7
Q ss_pred cCCceEEEEEeccCCCCcccccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeee
Q 043039 540 YEKLRHSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLK 619 (949)
Q Consensus 540 ~~~~r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~ 619 (949)
+..++.+.+.++.+..++ .+..+++|++|++++|.+..++. +..+++|+.|++++|. +..+|.. .. ++|++|+
T Consensus 40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~---l~~l~~~-~~-~~L~~L~ 112 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR---LKNLNGI-PS-ACLSRLF 112 (263)
T ss_dssp HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC---CSCCTTC-CC-SSCCEEE
T ss_pred cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc---cCCcCcc-cc-CcccEEE
Confidence 467788888877777765 67788888889888888888877 8888888889888887 6666653 33 8888888
Q ss_pred ecccCCcccchhhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccccCCcCCCCCCCCcccCccc
Q 043039 620 LFFVGIEELPETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEFV 692 (949)
Q Consensus 620 L~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~~ 692 (949)
+++|.++.+| .+..+++|++|++++|. +..+| .+..+++|++|++++|.+..+ ..+..+++|+.|++..
T Consensus 113 L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 113 LDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp CCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEE
T ss_pred ccCCccCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCC
Confidence 8888888875 58888888999988887 67776 688888888888888888877 5678888888887655
No 128
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.31 E-value=7.3e-12 Score=126.66 Aligned_cols=81 Identities=19% Similarity=0.314 Sum_probs=38.4
Q ss_pred EEEeCCccccccccccccccCCCCCCeeeecccCCcccch-hhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCC
Q 043039 591 ALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPE-TFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDE 669 (949)
Q Consensus 591 ~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 669 (949)
.++++++. +..+|..+. .+|+.|++++|.++.+|. .+..+++|++|+|++|......|..+..+++|++|++++
T Consensus 15 ~v~c~~~~---l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 15 IVDCRGKG---LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp EEECTTSC---CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred EEEcCCCC---cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 34444444 444444332 345555555555554443 344555555555555542222244455555555555555
Q ss_pred cccccCC
Q 043039 670 DDLDYMP 676 (949)
Q Consensus 670 ~~l~~~p 676 (949)
|.++.+|
T Consensus 90 N~l~~l~ 96 (220)
T 2v9t_B 90 NKITELP 96 (220)
T ss_dssp SCCCCCC
T ss_pred CcCCccC
Confidence 5544444
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.29 E-value=4.7e-12 Score=151.46 Aligned_cols=147 Identities=22% Similarity=0.198 Sum_probs=71.1
Q ss_pred CceEEEEEeccCCCCcccccCCCCceEEEec-----CCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCC
Q 043039 542 KLRHSILVLHYNASFPVSIFNAKKLRSLLIQ-----GYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLR 616 (949)
Q Consensus 542 ~~r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~-----~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~ 616 (949)
.++++.+..+.....+..+....+|+.+.+. .|.+...+..|..++.|+.|+|++|. +..+|..+..+++|+
T Consensus 174 ~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~---l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 174 LTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQ---IFNISANIFKYDFLT 250 (727)
T ss_dssp ------------------------------------------------CCCCCCEEECTTSC---CSCCCGGGGGCCSCS
T ss_pred ccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCC---CCCCChhhcCCCCCC
Confidence 3455555544444333333333333333222 22233334456666667777777666 556666666677777
Q ss_pred eeeecccCCcccchhhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccccCCcCCCCCCCCcccCccc
Q 043039 617 YLKLFFVGIEELPETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEFV 692 (949)
Q Consensus 617 ~L~L~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~~ 692 (949)
+|+|++|.|+.+|..+++|++|++|+|++|. +..+|..++.|++|++|++++|.++.+|.+|+.|++|++|++..
T Consensus 251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTT
T ss_pred EEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCC
Confidence 7777777766667666777777777777666 55666667777777777776666766666677777777666444
No 130
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.29 E-value=3e-10 Score=126.25 Aligned_cols=298 Identities=12% Similarity=0.051 Sum_probs=173.2
Q ss_pred cCccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccc-cceEEEEEeCCCCCHHHHHHH
Q 043039 173 VSEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNN-FNVMIWVCVSDPFDVFRVWKA 251 (949)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~ 251 (949)
+..|+||+++++.+.+++..... ....+.+.|+|++|+||||||+.+++....... -..++|+++....+...++..
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLAD 96 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHH
Confidence 36799999999999999864311 123458899999999999999999885221110 235778887777778888888
Q ss_pred HHHhcCCCCCC-CcchHHHHHHHHhhhC--CceEEEEEeCCCCCC----cccHHHHHHhhhc-cCCCcEEEEEccchhhH
Q 043039 252 IIENLDGYTPD-LGELNTLHQLINNRIG--GKKVLLVLDDVWTED----GNKWESFQRCLIN-AHRGSKILVTTRKETVA 323 (949)
Q Consensus 252 i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~ 323 (949)
++.+++..... ..........+.+.+. +++.+||||+++... ...+..+...+.. ...+..+|+||+.....
T Consensus 97 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 97 LLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFV 176 (386)
T ss_dssp HTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence 88887654322 1234444555555543 558999999995421 2333344433322 23355678888765432
Q ss_pred hhhcC-------cceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcC---CCchHHHHHH-hhhc----
Q 043039 324 RMIGS-------TCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCK---GLPLAVKTIG-SLLR---- 388 (949)
Q Consensus 324 ~~~~~-------~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Plal~~~~-~~l~---- 388 (949)
..+.. ...+.+.+++.++..+++...+..... ......++.+.+++.++ |.|..+..+. ....
T Consensus 177 ~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~ 254 (386)
T 2qby_A 177 DLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK--PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAER 254 (386)
T ss_dssp GGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC--SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc--CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 22111 148999999999999999986532111 01112344566666676 9998443332 2211
Q ss_pred -c--CCCHHHHHHHHhhhccchhhhccchHHHHHhccCCCChhHHHHHhhhcccCC-C-cccChhhHHHHH--HHc--Cc
Q 043039 389 -F--KKAREEWQSILDSEIWQVEEFEKNLLPALLLSYNDLPNEIKRCFSYCAVLPK-E-CYVDRDELIKLW--MAQ--GY 459 (949)
Q Consensus 389 -~--~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~a~fp~-~-~~i~~~~li~~w--~ae--g~ 459 (949)
. .-+.+.+..++... ....+.-.+..+|...+..+..++...+ + ..+....+.+.. +++ |.
T Consensus 255 ~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~ 324 (386)
T 2qby_A 255 MKDTKVKEEYVYMAKEEI----------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGV 324 (386)
T ss_dssp TTCSSCCHHHHHHHHHHH----------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTC
T ss_pred cCCCccCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCC
Confidence 1 11345555544431 1124455667888887777766664221 1 123333332221 111 21
Q ss_pred cccCCChhhhhHHHHHHHHHHHHHHhccCccccc
Q 043039 460 IDQKGNKEMEMEMEMVGERYFDLLAKRSFFQEFE 493 (949)
Q Consensus 460 i~~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~ 493 (949)
.... ......+++.|...+++....
T Consensus 325 -~~~~--------~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 325 -EAVT--------QRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp -CCCC--------HHHHHHHHHHHHHHTSEEEEE
T ss_pred -CCCC--------HHHHHHHHHHHHhCCCEEEEe
Confidence 1111 234567889999999997643
No 131
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.27 E-value=9.5e-11 Score=121.19 Aligned_cols=198 Identities=12% Similarity=0.126 Sum_probs=121.2
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAII 253 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 253 (949)
..++||+.+++.+..++.... ..+.+.|+|++|+||||+|+.+++.......+.. ........ ...+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDN-CREIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHH-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHH-HHHHh
Confidence 459999999999999996532 2348899999999999999999875321111100 00000000 00000
Q ss_pred HhcC-----CCCCCCcchHHHHHHHHhh----hCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccchhhH-
Q 043039 254 ENLD-----GYTPDLGELNTLHQLINNR----IGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKETVA- 323 (949)
Q Consensus 254 ~~l~-----~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~- 323 (949)
.... .........+.....+... ..+++.+||+||++..+...++.+...+.....+..+|+||+.....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 0000 0000001111222222221 23568999999997766566777777776666678889988764321
Q ss_pred hh-hcCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHHhhh
Q 043039 324 RM-IGSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIGSLL 387 (949)
Q Consensus 324 ~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 387 (949)
.. ......+++.+++.++..+++...+...+.... .+..+.|++.|+|.|..+..+...+
T Consensus 171 ~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 171 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC----HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 122468999999999999999988754332111 3556789999999999988776543
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.25 E-value=7.1e-12 Score=118.27 Aligned_cols=123 Identities=21% Similarity=0.170 Sum_probs=109.1
Q ss_pred CCceEEEEEeccCC--CCcccccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCcccccccc-ccccccCCCCCCe
Q 043039 541 EKLRHSILVLHYNA--SFPVSIFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIER-IPNGIEKLIHLRY 617 (949)
Q Consensus 541 ~~~r~l~l~~~~~~--~l~~~~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~-lp~~i~~l~~L~~ 617 (949)
.+++++.+.++... .+|..+..+++|+.|++++|.+..+ ..+..+++|++|++++|. +.. +|..++.+++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR---VSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSC---CCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCc---ccchHHHHhhhCCCCCE
Confidence 67889999888877 6788888999999999999999888 668899999999999998 666 7887888999999
Q ss_pred eeecccCCcccc--hhhcCCCCCcEEeecCCCCCCcccc----ccccCCCCCeeeCC
Q 043039 618 LKLFFVGIEELP--ETFCELFNLQNLDLRRCSKFKRLPQ----NIGKLVNLRHLIFD 668 (949)
Q Consensus 618 L~L~~~~i~~lp--~~l~~L~~L~~L~L~~~~~l~~lp~----~i~~L~~L~~L~l~ 668 (949)
|++++|.++.+| ..++.+++|++|++++|. +..+|. .+..+++|++|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 999999999875 889999999999999997 777775 68999999999864
No 133
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.24 E-value=3e-11 Score=123.08 Aligned_cols=130 Identities=24% Similarity=0.374 Sum_probs=115.8
Q ss_pred CCceEEEEEeccCCCC-cccccCCCCceEEEecCCCCCCcch-hhccCCceeEEEeCCcccccccccccc-ccCCCCCCe
Q 043039 541 EKLRHSILVLHYNASF-PVSIFNAKKLRSLLIQGYSLQHMPS-FFDQLTCLRALRIGKYGDDAIERIPNG-IEKLIHLRY 617 (949)
Q Consensus 541 ~~~r~l~l~~~~~~~l-~~~~~~~~~Lr~L~l~~~~l~~l~~-~~~~l~~Lr~L~L~~~~~~~~~~lp~~-i~~l~~L~~ 617 (949)
..++.+.+.++.+..+ +..+..+++|+.|++++|.+..++. .|..+++|++|+|++|. +..+|.. +..+++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~---l~~l~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ---LTVLPSAVFDRLVHLKE 116 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc---CCccChhHhCcchhhCe
Confidence 7899999999988876 5668899999999999999998864 57899999999999998 7777654 689999999
Q ss_pred eeecccCCcccchhhcCCCCCcEEeecCCCCCCcccc-ccccCCCCCeeeCCCccccc
Q 043039 618 LKLFFVGIEELPETFCELFNLQNLDLRRCSKFKRLPQ-NIGKLVNLRHLIFDEDDLDY 674 (949)
Q Consensus 618 L~L~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~ 674 (949)
|+|++|.+..+|..+..+++|++|+|++|. +..+|. .+..+++|++|++.+|.+..
T Consensus 117 L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 117 LFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp EECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred EeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 999999999999999999999999999998 677774 58889999999999988764
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.24 E-value=1.6e-11 Score=142.17 Aligned_cols=119 Identities=18% Similarity=0.161 Sum_probs=103.5
Q ss_pred CceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccchhhcCCCCCcEEeec
Q 043039 565 KLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPETFCELFNLQNLDLR 644 (949)
Q Consensus 565 ~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L~~L~L~ 644 (949)
.|+.|++++|.++.+|. |..+++|+.|+|++|. +..+|..++.+++|++|+|++|.++.+| .++.+++|++|+|+
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~---l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR---LRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC---CCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCccc---ccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECC
Confidence 48889999999999987 8899999999999998 7789999999999999999999999988 89999999999999
Q ss_pred CCCCCCcc--ccccccCCCCCeeeCCCcccccCCcCCCC----CCCCcccC
Q 043039 645 RCSKFKRL--PQNIGKLVNLRHLIFDEDDLDYMPKGMGS----LTGLRTLS 689 (949)
Q Consensus 645 ~~~~l~~l--p~~i~~L~~L~~L~l~~~~l~~~p~~i~~----l~~L~~L~ 689 (949)
+|. +..+ |..++.+++|++|++++|.++.+|..+.. +++|+.|+
T Consensus 517 ~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 517 NNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSC-CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCC-CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 988 6666 88999999999999999999988765533 56666664
No 135
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.24 E-value=1.2e-11 Score=135.79 Aligned_cols=174 Identities=20% Similarity=0.218 Sum_probs=91.9
Q ss_pred eEEEecCCCCCCcchhhccCCceeEEEeCCcccccccccccc-cc-CCCCCCeeeecccCCcccc-hhhcCCCCCcEEee
Q 043039 567 RSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNG-IE-KLIHLRYLKLFFVGIEELP-ETFCELFNLQNLDL 643 (949)
Q Consensus 567 r~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~-i~-~l~~L~~L~L~~~~i~~lp-~~l~~L~~L~~L~L 643 (949)
++++++++.++.+|..+. ..++.|+|++|. +..++.. +. ++++|++|+|++|.|+.+| ..+..+++|++|+|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~---l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNN---LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSC---CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCC---CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 456666666666655332 245666666665 5554433 33 5666666666666666554 33556666666666
Q ss_pred cCCCCCCcccc-ccccCCCCCeeeCCCcccccCCcCCCCCCCCcccCccceecCCCccCCCccCcccccccccCCCceEE
Q 043039 644 RRCSKFKRLPQ-NIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKI 722 (949)
Q Consensus 644 ~~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i 722 (949)
++|. +..+|. .+..+++|++|++++|.+..++.
T Consensus 96 s~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~--------------------------------------------- 129 (361)
T 2xot_A 96 SSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDR--------------------------------------------- 129 (361)
T ss_dssp CSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECT---------------------------------------------
T ss_pred CCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECH---------------------------------------------
Confidence 6655 444433 34555555555555554443311
Q ss_pred ccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCCC-chhhcccC
Q 043039 723 RGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARFP-NWILSLNK 801 (949)
Q Consensus 723 ~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p-~~~~~l~~ 801 (949)
..+..+++|+.|++++|.+..... ..+..+..+++|+.|+|++|.+.. +| ..+..++.
T Consensus 130 --------------~~~~~l~~L~~L~L~~N~l~~l~~------~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~ 188 (361)
T 2xot_A 130 --------------NAFEDMAQLQKLYLSQNQISRFPV------ELIKDGNKLPKLMLLDLSSNKLKK-LPLTDLQKLPA 188 (361)
T ss_dssp --------------TTTTTCTTCCEEECCSSCCCSCCG------GGTC----CTTCCEEECCSSCCCC-CCHHHHHHSCH
T ss_pred --------------HHhCCcccCCEEECCCCcCCeeCH------HHhcCcccCCcCCEEECCCCCCCc-cCHHHhhhccH
Confidence 012334456666666665553210 011112456777777777777776 54 34555555
Q ss_pred --CcEEEEeccCC
Q 043039 802 --LRMLCLSFCKK 812 (949)
Q Consensus 802 --L~~L~L~~~~~ 812 (949)
|+.|+|.+|++
T Consensus 189 ~~l~~l~l~~N~~ 201 (361)
T 2xot_A 189 WVKNGLYLHNNPL 201 (361)
T ss_dssp HHHTTEECCSSCE
T ss_pred hhcceEEecCCCc
Confidence 36677777654
No 136
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.22 E-value=4.4e-11 Score=120.93 Aligned_cols=129 Identities=14% Similarity=0.143 Sum_probs=112.6
Q ss_pred CCceEEEEEeccCCCCc--ccccCCCCceEEEecCCCCCCcch-hhccCCceeEEEeCCccccccccccc-cccCCCCCC
Q 043039 541 EKLRHSILVLHYNASFP--VSIFNAKKLRSLLIQGYSLQHMPS-FFDQLTCLRALRIGKYGDDAIERIPN-GIEKLIHLR 616 (949)
Q Consensus 541 ~~~r~l~l~~~~~~~l~--~~~~~~~~Lr~L~l~~~~l~~l~~-~~~~l~~Lr~L~L~~~~~~~~~~lp~-~i~~l~~L~ 616 (949)
..++.+.+.++.+..++ ..+..+++|+.|++++|.++.++. .|..+++|++|+|++|. +..++. .+..+++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~ 108 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR---LENVQHKMFKGLESLK 108 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC---CCCCCGGGGTTCSSCC
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc---cCccCHhHhcCCcCCC
Confidence 56788999988887763 347889999999999999998765 78999999999999998 777655 589999999
Q ss_pred eeeecccCCccc-chhhcCCCCCcEEeecCCCCCCcc-ccccccCCCCCeeeCCCcccc
Q 043039 617 YLKLFFVGIEEL-PETFCELFNLQNLDLRRCSKFKRL-PQNIGKLVNLRHLIFDEDDLD 673 (949)
Q Consensus 617 ~L~L~~~~i~~l-p~~l~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~ 673 (949)
+|+|++|.++.+ |..+..+++|++|+|++|. +..+ |..+..+++|++|++++|.+.
T Consensus 109 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 109 TLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp EEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred EEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 999999999988 6779999999999999998 5555 788999999999999998876
No 137
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.22 E-value=3.8e-10 Score=114.71 Aligned_cols=187 Identities=16% Similarity=0.078 Sum_probs=120.0
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAII 253 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 253 (949)
..++||++.++.+.+++.... .+.+.|+|++|+|||++|+.+++.......-...+.+..+.......+...+.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIK 90 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHH
Confidence 468999999999999996532 22389999999999999999987521111112344445444333322222111
Q ss_pred HhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccchhhH-hh-hcCcce
Q 043039 254 ENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKETVA-RM-IGSTCV 331 (949)
Q Consensus 254 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~~-~~~~~~ 331 (949)
...... ..-.+++.+||+||++.......+.+...+.....+.++|+||+..... .. ......
T Consensus 91 ~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~ 155 (226)
T 2chg_A 91 EFARTA---------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAV 155 (226)
T ss_dssp HHHTSC---------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred HHhccc---------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCce
Confidence 111100 0113578899999997766556667777776666778899988764321 11 122348
Q ss_pred EeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHHh
Q 043039 332 ISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIGS 385 (949)
Q Consensus 332 ~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 385 (949)
+.+.+++.++..+++.+.+...+.... .+....|++.++|.|..+..+..
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 156 FRFKPVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999999988754332211 34567788899999986554433
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.20 E-value=4.1e-11 Score=118.27 Aligned_cols=123 Identities=23% Similarity=0.277 Sum_probs=61.1
Q ss_pred EEEEeccCCCCcccccCCCCceEEEecCCCCCCcch--hhccCCceeEEEeCCccccccccc-cccccCCCCCCeeeecc
Q 043039 546 SILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMPS--FFDQLTCLRALRIGKYGDDAIERI-PNGIEKLIHLRYLKLFF 622 (949)
Q Consensus 546 l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~~--~~~~l~~Lr~L~L~~~~~~~~~~l-p~~i~~l~~L~~L~L~~ 622 (949)
+.+.++....+|..+. .+|++|++++|.+..++. .|..+++|++|+|++|. +..+ |..+..+++|++|+|++
T Consensus 13 l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 13 VDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ---LTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp EECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC---CCCBCTTTTTTCTTCCEEECCS
T ss_pred EEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC---CCCcCHhHcCCcccCCEEECCC
Confidence 3333334444444332 255555555555555443 24555555555555555 3333 34455555555555555
Q ss_pred cCCcccchh-hcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccc
Q 043039 623 VGIEELPET-FCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLD 673 (949)
Q Consensus 623 ~~i~~lp~~-l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~ 673 (949)
|.++.+|.. +..+++|++|+|++|......|..+..+++|++|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 555554432 455555555555555522233444555555555555555443
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.19 E-value=2.1e-11 Score=118.68 Aligned_cols=128 Identities=20% Similarity=0.168 Sum_probs=111.2
Q ss_pred cCCceEEEEEeccCCCCcccccCC-CCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccc-cCCCCCCe
Q 043039 540 YEKLRHSILVLHYNASFPVSIFNA-KKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGI-EKLIHLRY 617 (949)
Q Consensus 540 ~~~~r~l~l~~~~~~~l~~~~~~~-~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i-~~l~~L~~ 617 (949)
...++.+.+.++....++. +..+ ++|+.|++++|.++.+ ..|..+++|++|++++|. +..+|..+ ..+++|++
T Consensus 18 ~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR---ICRIGEGLDQALPDLTE 92 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC---CCEECSCHHHHCTTCCE
T ss_pred cCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc---ccccCcchhhcCCCCCE
Confidence 3678999999888887654 4444 4999999999999988 458899999999999998 77887665 89999999
Q ss_pred eeecccCCcccch--hhcCCCCCcEEeecCCCCCCccccc----cccCCCCCeeeCCCcccc
Q 043039 618 LKLFFVGIEELPE--TFCELFNLQNLDLRRCSKFKRLPQN----IGKLVNLRHLIFDEDDLD 673 (949)
Q Consensus 618 L~L~~~~i~~lp~--~l~~L~~L~~L~L~~~~~l~~lp~~----i~~L~~L~~L~l~~~~l~ 673 (949)
|++++|.+..+|. .+..+++|++|++++|. +..+|.. ++.+++|+.|+++.|.+.
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999999999987 89999999999999998 7788875 899999999998877654
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.19 E-value=6.2e-11 Score=116.93 Aligned_cols=117 Identities=21% Similarity=0.332 Sum_probs=59.4
Q ss_pred EEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccc-hhhcCCCCCcEEeecCC
Q 043039 568 SLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELP-ETFCELFNLQNLDLRRC 646 (949)
Q Consensus 568 ~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp-~~l~~L~~L~~L~L~~~ 646 (949)
+++++++.++.+|..+ .+.|+.|+|++|. +..+|..+..+++|++|+|++|.|+.++ ..+..+++|++|+|++|
T Consensus 14 ~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~---i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGI--PRDVTELYLDGNQ---FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EEECTTSCCSSCCSCC--CTTCCEEECCSSC---CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEcCCCCCCcCCCCC--CCCCCEEECCCCc---CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 4455555555554422 1345555555555 4455555555555555555555555543 23555555555555555
Q ss_pred CCCCccc-cccccCCCCCeeeCCCcccccCCcC-CCCCCCCcccCc
Q 043039 647 SKFKRLP-QNIGKLVNLRHLIFDEDDLDYMPKG-MGSLTGLRTLSE 690 (949)
Q Consensus 647 ~~l~~lp-~~i~~L~~L~~L~l~~~~l~~~p~~-i~~l~~L~~L~~ 690 (949)
. +..+| ..+..+++|++|++++|.++.+|.. +..+++|+.|++
T Consensus 89 ~-l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 89 R-LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAI 133 (193)
T ss_dssp C-CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred c-cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEe
Confidence 4 33333 2355555555555555555555542 445555555543
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.18 E-value=7.5e-11 Score=116.30 Aligned_cols=123 Identities=19% Similarity=0.269 Sum_probs=104.9
Q ss_pred EEEEEeccCCCCcccccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCcccccccccc-ccccCCCCCCeeeeccc
Q 043039 545 HSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIP-NGIEKLIHLRYLKLFFV 623 (949)
Q Consensus 545 ~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~ 623 (949)
.+.+.++.+..+|..+. ++|++|++++|.++.+|..|..+++|+.|+|++|. +..++ ..+.++++|++|+|++|
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~---i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR---ISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc---CCEeCHhHccCCCCCCEEECCCC
Confidence 45555556666676543 68999999999999999889999999999999998 77775 46999999999999999
Q ss_pred CCcccch-hhcCCCCCcEEeecCCCCCCcccc-ccccCCCCCeeeCCCcccc
Q 043039 624 GIEELPE-TFCELFNLQNLDLRRCSKFKRLPQ-NIGKLVNLRHLIFDEDDLD 673 (949)
Q Consensus 624 ~i~~lp~-~l~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~ 673 (949)
.++.+|+ .+..+++|++|+|++|. +..+|. .+..+++|++|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 9998875 68999999999999998 777776 4788999999999998775
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.18 E-value=2e-11 Score=146.06 Aligned_cols=115 Identities=20% Similarity=0.299 Sum_probs=88.8
Q ss_pred cccccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccchhhcCCC
Q 043039 557 PVSIFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPETFCELF 636 (949)
Q Consensus 557 ~~~~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~ 636 (949)
+..+..++.|+.|+|++|.+..+|..+..+++|++|+|++|. +..+|..+++|++|++|+|++|.|+.+|..++.|+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~---l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS---LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC---CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc---CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCC
Confidence 456677788888888888888777766678888888888887 66778778888888888888888888888888888
Q ss_pred CCcEEeecCCCCCCccccccccCCCCCeeeCCCcccccC
Q 043039 637 NLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYM 675 (949)
Q Consensus 637 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~ 675 (949)
+|++|+|++|. +..+|..|+.|++|++|++++|.+...
T Consensus 294 ~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 294 QLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp TCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred CCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCC
Confidence 88888888876 677888888888888888888877643
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.17 E-value=6.1e-11 Score=117.02 Aligned_cols=120 Identities=20% Similarity=0.284 Sum_probs=104.6
Q ss_pred eEEEecCCCCCCcchhhccCCceeEEEeCCcccccccccccc--ccCCCCCCeeeecccCCccc-chhhcCCCCCcEEee
Q 043039 567 RSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNG--IEKLIHLRYLKLFFVGIEEL-PETFCELFNLQNLDL 643 (949)
Q Consensus 567 r~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~--i~~l~~L~~L~L~~~~i~~l-p~~l~~L~~L~~L~L 643 (949)
++++++++.++.+|..+.. .|+.|++++|. +..++.. ++.+++|++|+|++|.++.+ |..+..+++|++|+|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~---i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNE---LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCC---CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCc---CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 7899999999999875533 89999999998 7777753 89999999999999999987 678999999999999
Q ss_pred cCCCCCCccc-cccccCCCCCeeeCCCcccccC-CcCCCCCCCCcccCccc
Q 043039 644 RRCSKFKRLP-QNIGKLVNLRHLIFDEDDLDYM-PKGMGSLTGLRTLSEFV 692 (949)
Q Consensus 644 ~~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~~-p~~i~~l~~L~~L~~~~ 692 (949)
++|. +..+| ..+..+++|++|++++|.++.+ |..+..+++|++|++..
T Consensus 86 s~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 86 GENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred CCCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 9998 55555 4588999999999999999976 67789999999998655
No 144
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.16 E-value=7.5e-11 Score=129.37 Aligned_cols=142 Identities=19% Similarity=0.195 Sum_probs=100.4
Q ss_pred EEEEEeccCCCCcccccCCCCceEEEecCCCCCCcch-hhc-cCCceeEEEeCCcccccccccc-ccccCCCCCCeeeec
Q 043039 545 HSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHMPS-FFD-QLTCLRALRIGKYGDDAIERIP-NGIEKLIHLRYLKLF 621 (949)
Q Consensus 545 ~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~~-~~~-~l~~Lr~L~L~~~~~~~~~~lp-~~i~~l~~L~~L~L~ 621 (949)
.+.+.++....+|..+. +.++.|++++|.++.++. .|. .+++|+.|+|++|. +..++ ..+.++++|++|+|+
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~---i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH---LNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECC
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc---CCccChhhccCCCCCCEEECC
Confidence 44555555556665443 457888888888877654 355 78888888888887 66665 357788888888888
Q ss_pred ccCCcccch-hhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccccCCcCC----CCCCCCcccCcc
Q 043039 622 FVGIEELPE-TFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKGM----GSLTGLRTLSEF 691 (949)
Q Consensus 622 ~~~i~~lp~-~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i----~~l~~L~~L~~~ 691 (949)
+|.+..+|. .+..+++|++|+|++|......|..+..+++|++|++++|.++.+|..+ ..+++|+.|++.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence 888887764 4778888888888887733333567788888888888888888877654 567777777644
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.14 E-value=9e-13 Score=131.18 Aligned_cols=141 Identities=18% Similarity=0.189 Sum_probs=109.3
Q ss_pred ceEEEEEec--cCCCCcccccCCCCceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeee
Q 043039 543 LRHSILVLH--YNASFPVSIFNAKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKL 620 (949)
Q Consensus 543 ~r~l~l~~~--~~~~l~~~~~~~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L 620 (949)
++...+... ....+|..+..+++|++|++++|.+..+| .+..+++|+.|++++|. +..+|..+..+++|++|++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~---l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL---IKKIENLDAVADTLEELWI 100 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE---ECSCSSHHHHHHHCSEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC---cccccchhhcCCcCCEEEC
Confidence 444444433 23445557788889999999999888888 68888899999999887 7788887778889999999
Q ss_pred cccCCcccchhhcCCCCCcEEeecCCCCCCcccc--ccccCCCCCeeeCCCcccccCCcC-----------CCCCCCCcc
Q 043039 621 FFVGIEELPETFCELFNLQNLDLRRCSKFKRLPQ--NIGKLVNLRHLIFDEDDLDYMPKG-----------MGSLTGLRT 687 (949)
Q Consensus 621 ~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~l~~~p~~-----------i~~l~~L~~ 687 (949)
++|.++.+| .+..+++|++|++++|. +..+|. .+..+++|++|++++|.+...+.. +..+++|+.
T Consensus 101 ~~N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 178 (198)
T 1ds9_A 101 SYNQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK 178 (198)
T ss_dssp EEEECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred cCCcCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEE
Confidence 999888887 68888899999999887 666654 678889999999888887654322 567777777
Q ss_pred cC
Q 043039 688 LS 689 (949)
Q Consensus 688 L~ 689 (949)
|+
T Consensus 179 Ld 180 (198)
T 1ds9_A 179 LD 180 (198)
T ss_dssp EC
T ss_pred EC
Confidence 76
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.05 E-value=7.5e-10 Score=107.68 Aligned_cols=106 Identities=28% Similarity=0.501 Sum_probs=58.3
Q ss_pred CCceEEEecCCCCCCcch-hhccCCceeEEEeCCcccccccccccc-ccCCCCCCeeeecccCCcccchh-hcCCCCCcE
Q 043039 564 KKLRSLLIQGYSLQHMPS-FFDQLTCLRALRIGKYGDDAIERIPNG-IEKLIHLRYLKLFFVGIEELPET-FCELFNLQN 640 (949)
Q Consensus 564 ~~Lr~L~l~~~~l~~l~~-~~~~l~~Lr~L~L~~~~~~~~~~lp~~-i~~l~~L~~L~L~~~~i~~lp~~-l~~L~~L~~ 640 (949)
++|++|++++|.+..++. .|..+++|++|++++|. +..+|.. +..+++|++|++++|.++.+|.. +..+++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 104 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ---IQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKE 104 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc---ceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCE
Confidence 456666666665555443 34555666666666555 4444432 45566666666666666555543 455566666
Q ss_pred EeecCCCCCCccccc-cccCCCCCeeeCCCcccc
Q 043039 641 LDLRRCSKFKRLPQN-IGKLVNLRHLIFDEDDLD 673 (949)
Q Consensus 641 L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~ 673 (949)
|++++|. +..+|.. +..+++|++|++++|.+.
T Consensus 105 L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 105 LALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp EECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 6666554 4445443 245556666665555544
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.03 E-value=6e-10 Score=107.69 Aligned_cols=107 Identities=21% Similarity=0.339 Sum_probs=82.3
Q ss_pred eEEEecCCCCCCcchhhccCCceeEEEeCCccccccccc-cccccCCCCCCeeeecccCCcccchh-hcCCCCCcEEeec
Q 043039 567 RSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERI-PNGIEKLIHLRYLKLFFVGIEELPET-FCELFNLQNLDLR 644 (949)
Q Consensus 567 r~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-l~~L~~L~~L~L~ 644 (949)
+.++++++.+..+|..+. ++|++|+|++|. +..+ |..+.++++|++|+|++|.++.+|.. +..+++|++|+|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ---ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCC---ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 677888888888776443 678888888887 6666 55678888888888888888888765 4788888888888
Q ss_pred CCCCCCccccc-cccCCCCCeeeCCCcccccCCcCC
Q 043039 645 RCSKFKRLPQN-IGKLVNLRHLIFDEDDLDYMPKGM 679 (949)
Q Consensus 645 ~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~~p~~i 679 (949)
+|. +..+|.. +..+++|++|++++|.+...+..+
T Consensus 90 ~N~-l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~ 124 (174)
T 2r9u_A 90 DNH-LKSIPRGAFDNLKSLTHIYLYNNPWDCECRDI 124 (174)
T ss_dssp SSC-CCCCCTTTTTTCTTCSEEECCSSCBCTTBGGG
T ss_pred CCc-cceeCHHHhccccCCCEEEeCCCCcccccccH
Confidence 877 6677765 778888888888888777655443
No 148
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.01 E-value=1.3e-09 Score=106.05 Aligned_cols=121 Identities=25% Similarity=0.382 Sum_probs=103.2
Q ss_pred ceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccccc-cccCCCCCCeeeecccCCcccchh-hcCCCCCcEEee
Q 043039 566 LRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIPN-GIEKLIHLRYLKLFFVGIEELPET-FCELFNLQNLDL 643 (949)
Q Consensus 566 Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp~~-l~~L~~L~~L~L 643 (949)
.+.++++++.+..+|..+ .++|+.|++++|. +..+|. .++.+++|++|++++|.++.+|.. +..+++|++|++
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNK---LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCc---ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 567888999888888643 3689999999998 667765 468999999999999999998865 689999999999
Q ss_pred cCCCCCCccccc-cccCCCCCeeeCCCcccccCCcC-CCCCCCCcccCccc
Q 043039 644 RRCSKFKRLPQN-IGKLVNLRHLIFDEDDLDYMPKG-MGSLTGLRTLSEFV 692 (949)
Q Consensus 644 ~~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~~p~~-i~~l~~L~~L~~~~ 692 (949)
++|. +..+|.. +..+++|++|++++|.++.+|.. +..+++|++|++..
T Consensus 84 ~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 84 HENK-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCCC-ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence 9998 6677654 68999999999999999999876 47899999998654
No 149
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.99 E-value=3.6e-09 Score=114.16 Aligned_cols=186 Identities=13% Similarity=0.190 Sum_probs=117.3
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAII 253 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 253 (949)
..++|++..++.+..++.... .+.+.|+|++|+||||+|+.+++...-......+++++.++...... .++++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-i~~~~ 93 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDV-VRNQI 93 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHH-HHTHH
T ss_pred HHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHH-HHHHH
Confidence 469999999999999986432 22388999999999999999987521111112244444443222211 11122
Q ss_pred HhcCCCCCCCcchHHHHHHHHhhh-CCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccchh-hHhhh-cCcc
Q 043039 254 ENLDGYTPDLGELNTLHQLINNRI-GGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKET-VARMI-GSTC 330 (949)
Q Consensus 254 ~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~-~~~~ 330 (949)
..+... ...+ .+++.+||+||++......++.+...+.....++++|+||+... +...+ ....
T Consensus 94 ~~~~~~--------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~ 159 (323)
T 1sxj_B 94 KHFAQK--------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA 159 (323)
T ss_dssp HHHHHB--------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHhc--------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhce
Confidence 111100 0012 35688999999987655556667777766666788888887643 21221 2345
Q ss_pred eEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchH-HHHHH
Q 043039 331 VISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLA-VKTIG 384 (949)
Q Consensus 331 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla-l~~~~ 384 (949)
.+++.+++.++..+++...+...+.... .+....|++.++|.|.. +..+.
T Consensus 160 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 160 ILRYSKLSDEDVLKRLLQIIKLEDVKYT----NDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred EEeecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 8999999999999999987643322111 34567888999999954 44443
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.98 E-value=2.9e-11 Score=120.16 Aligned_cols=123 Identities=21% Similarity=0.259 Sum_probs=106.0
Q ss_pred CCceEEEecCC--CCCCcchhhccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccchhhcCCCCCcEE
Q 043039 564 KKLRSLLIQGY--SLQHMPSFFDQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPETFCELFNLQNL 641 (949)
Q Consensus 564 ~~Lr~L~l~~~--~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L~~L 641 (949)
-.|+.+.+.++ .++.+|..+..+++|++|++++|. +..+| .+..+++|++|++++|.+..+|..+..+++|++|
T Consensus 23 l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~---l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L 98 (198)
T 1ds9_A 23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN---IEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEEL 98 (198)
T ss_dssp TTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE---ESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEE
T ss_pred cchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC---Ccccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEE
Confidence 34566666655 466777789999999999999998 77788 7999999999999999999999988889999999
Q ss_pred eecCCCCCCccccccccCCCCCeeeCCCcccccCCc--CCCCCCCCcccCccc
Q 043039 642 DLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPK--GMGSLTGLRTLSEFV 692 (949)
Q Consensus 642 ~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~--~i~~l~~L~~L~~~~ 692 (949)
++++|. +..+| .+..+++|++|++++|.++.+|. .+..+++|++|++..
T Consensus 99 ~L~~N~-l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 99 WISYNQ-IASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149 (198)
T ss_dssp EEEEEE-CCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECS
T ss_pred ECcCCc-CCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecC
Confidence 999997 77787 69999999999999999998764 678889999988543
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.96 E-value=1.5e-09 Score=104.49 Aligned_cols=105 Identities=24% Similarity=0.311 Sum_probs=77.3
Q ss_pred ceEEEecCCCCCCcchhhccCCceeEEEeCCccccccccc-cccccCCCCCCeeeecccCCcccchh-hcCCCCCcEEee
Q 043039 566 LRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERI-PNGIEKLIHLRYLKLFFVGIEELPET-FCELFNLQNLDL 643 (949)
Q Consensus 566 Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-l~~L~~L~~L~L 643 (949)
.++++++++.++.+|..+ .+.|++|+|++|. +..+ |..+..+++|++|+|++|.++.+|+. +..+++|++|+|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~---i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQ---ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCc---CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 467788888877777644 3678888888887 6666 45677888888888888888877765 467888888888
Q ss_pred cCCCCCCcccc-ccccCCCCCeeeCCCcccccCC
Q 043039 644 RRCSKFKRLPQ-NIGKLVNLRHLIFDEDDLDYMP 676 (949)
Q Consensus 644 ~~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~~p 676 (949)
++|. +..+|. .+..+++|++|++++|.+...+
T Consensus 86 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 86 NDNQ-LKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCCc-cCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 8876 666665 3777888888888877766443
No 152
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.95 E-value=5.9e-09 Score=112.47 Aligned_cols=267 Identities=17% Similarity=0.126 Sum_probs=146.0
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAII 253 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 253 (949)
..++|++..++.+..++..... .....+.+.|+|++|+|||++|+.+++.. .. ..+++..+......
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~~--~~---~~~~~~~~~~~~~~------- 78 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHEL--GV---NLRVTSGPAIEKPG------- 78 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHHH--TC---CEEEECTTTCCSHH-------
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHHh--CC---CEEEEeccccCChH-------
Confidence 4699999999999888753211 01123468899999999999999998752 21 23344443322221
Q ss_pred HhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccC------------------CCcEEEE
Q 043039 254 ENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAH------------------RGSKILV 315 (949)
Q Consensus 254 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~iiv 315 (949)
.+...+...+ .++.+|+||++..........+...+.... ++.++|.
T Consensus 79 --------------~l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 79 --------------DLAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp --------------HHHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred --------------HHHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 1122222111 245689999997765445555655554321 2356776
Q ss_pred EccchhhH-hhh-cC-cceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHHhhhcc---
Q 043039 316 TTRKETVA-RMI-GS-TCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIGSLLRF--- 389 (949)
Q Consensus 316 Ttr~~~v~-~~~-~~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~--- 389 (949)
||...... ..+ .. ...+.+.+++.++..+++.+.+...+... ..+....+++.++|.|..+..+...+..
T Consensus 144 ~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~ 219 (324)
T 1hqc_A 144 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRI----TEEAALEIGRRSRGTMRVAKRLFRRVRDFAQ 219 (324)
T ss_dssp EESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCC----CHHHHHHHHHHSCSCHHHHHHHHHHHTTTST
T ss_pred eCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 66643211 111 11 24789999999999999988875433211 2355678888999999887766544321
Q ss_pred ---C--CCHHHHHHHHhhhccchhhhccchHHHHHhccCCCChhHHHHHhhhcc-cCCC----------cccChhhHH--
Q 043039 390 ---K--KAREEWQSILDSEIWQVEEFEKNLLPALLLSYNDLPNEIKRCFSYCAV-LPKE----------CYVDRDELI-- 451 (949)
Q Consensus 390 ---~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~a~-fp~~----------~~i~~~~li-- 451 (949)
. -+.+....++. .+...+..++...+..+..+.. |..+ ..+++..+.
T Consensus 220 ~~~~~~i~~~~~~~~~~---------------~~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~ 284 (324)
T 1hqc_A 220 VAGEEVITRERALEALA---------------ALGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEV 284 (324)
T ss_dssp TTSCSCCCHHHHHHHHH---------------HHTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHH---------------HhcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHH
Confidence 1 12233333222 2223344555555554443332 2111 113333322
Q ss_pred --HHHHHcCccccCC-ChhhhhHHHHHHHHHHH-HHHhccCccc
Q 043039 452 --KLWMAQGYIDQKG-NKEMEMEMEMVGERYFD-LLAKRSFFQE 491 (949)
Q Consensus 452 --~~w~aeg~i~~~~-~~~~~~~~~~~~~~~l~-~L~~~sll~~ 491 (949)
++-+..|++.... +... .+.|..|++ ++.+++++|+
T Consensus 285 l~~~~i~~~li~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 285 HEPYLIRQGLLKRTPRGRVP----TELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp THHHHHHTTSEEEETTEEEE----CHHHHHHTTCCCCC------
T ss_pred HhHHHHHhcchhcCCcccee----cHHHHHHHhcCCCCCCCCCC
Confidence 2345567775433 3344 567777776 7777777764
No 153
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.94 E-value=1.9e-09 Score=116.56 Aligned_cols=287 Identities=13% Similarity=0.068 Sum_probs=136.7
Q ss_pred CCCceEEEecCCCCC-Ccchhhcc-CCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccc-hhhcC-----
Q 043039 563 AKKLRSLLIQGYSLQ-HMPSFFDQ-LTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELP-ETFCE----- 634 (949)
Q Consensus 563 ~~~Lr~L~l~~~~l~-~l~~~~~~-l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp-~~l~~----- 634 (949)
+.+++.|.+.++--. .+. .+.. +++|++|||++|. +......-+.++.++++.+..+ .+| ..|.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~~-~l~~~l~~L~~LdLs~n~---i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFR-HLRDEFPSLKVLDISNAE---IKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEECHHHHH-HHHHSCTTCCEEEEEEEE---ECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTE
T ss_pred hCceeEEEEeccccHHHHH-HHHHhhccCeEEecCcce---eEEecCcccccccccccccccc---ccCHHHhccccccc
Confidence 456777777664211 111 2333 6778888888776 4411111122233455555544 333 23445
Q ss_pred ---CCCCcEEeecCCCCCCcccc-ccccCCCCCeeeCCCcccccCCc-CCCCCCCCcccCccceecCCCccCCCccCccc
Q 043039 635 ---LFNLQNLDLRRCSKFKRLPQ-NIGKLVNLRHLIFDEDDLDYMPK-GMGSLTGLRTLSEFVAVSGGGKYGSKACNLDG 709 (949)
Q Consensus 635 ---L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~ 709 (949)
+++|+.|+|.. . +..++. .+..+++|+.|++..|.+..++. .+..+.++..+....... ..
T Consensus 97 ~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~-----------~~- 162 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDA-----------YR- 162 (329)
T ss_dssp EEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHH-----------HH-
T ss_pred ccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhh-----------hh-
Confidence 78888888877 3 666654 46778888888877777766654 344444444443111000 00
Q ss_pred ccccccCCCceEEccCCCCCChhhhhhhcccCCCCCC-eEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEecccc
Q 043039 710 LRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLI-SLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEV 788 (949)
Q Consensus 710 L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 788 (949)
.+..+. ...+..+..|+ .+.+..... -...+...-..+.++..+.+.+.-.
T Consensus 163 --~~~~i~------------------~~~f~~~~~L~~~i~~~~~~~--------l~~~~~~~~~~~~~~~~l~~~~~l~ 214 (329)
T 3sb4_A 163 --FKNRWE------------------HFAFIEGEPLETTIQVGAMGK--------LEDEIMKAGLQPRDINFLTIEGKLD 214 (329)
T ss_dssp --TSTTTT------------------TSCEEESCCCEEEEEECTTCC--------HHHHHHHTTCCGGGCSEEEEEECCC
T ss_pred --cccccc------------------ccccccccccceeEEecCCCc--------HHHHHhhcccCccccceEEEeeeec
Confidence 000000 00112222332 122211100 0011122222344555555554321
Q ss_pred CCCCCchhhcccCCcEEEEeccCCCCCCCC-CCCCCCcceeeecCCCCcEEeCCcccCCCCCCCCccc-eeeeccccccc
Q 043039 789 KARFPNWILSLNKLRMLCLSFCKKCEIMPP-LGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLK-KFTLWSLDGWE 866 (949)
Q Consensus 789 ~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~-~L~l~~l~~l~ 866 (949)
...+......+++|+.|+|.+|.+....+. |..+++|+.|.|.+. ++.++...+. .+++|+ .|.+.+ +++
T Consensus 215 ~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~----~~~~L~~~l~l~~--~l~ 286 (329)
T 3sb4_A 215 NADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFS----NCGRLAGTLELPA--SVT 286 (329)
T ss_dssp HHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT----TCTTCCEEEEECT--TCC
T ss_pred HHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhh----CChhccEEEEEcc--cce
Confidence 110111111356677777766655443333 666777777777553 4444432221 344444 444433 222
Q ss_pred cccccccccccccccceeccccCccCcCCCC-CCCCCCCcceEE
Q 043039 867 EWEFIEENITIMPQLNSLAIRDCSKLKMLPD-QVLRSTTLKKLE 909 (949)
Q Consensus 867 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~ 909 (949)
.+ .+..+..+++|+.|++..+ .++.++. .+.++++|+.|.
T Consensus 287 ~I--~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 287 AI--EFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EE--CTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred EE--chhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 22 2234667888888888666 5666654 566777777765
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.90 E-value=3.3e-09 Score=102.39 Aligned_cols=110 Identities=24% Similarity=0.293 Sum_probs=92.5
Q ss_pred eEEEEEeccCCCCcccccCCCCceEEEecCCCCCCc-chhhccCCceeEEEeCCcccccccccccc-ccCCCCCCeeeec
Q 043039 544 RHSILVLHYNASFPVSIFNAKKLRSLLIQGYSLQHM-PSFFDQLTCLRALRIGKYGDDAIERIPNG-IEKLIHLRYLKLF 621 (949)
Q Consensus 544 r~l~l~~~~~~~l~~~~~~~~~Lr~L~l~~~~l~~l-~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~-i~~l~~L~~L~L~ 621 (949)
+.+.+.++....+|..+. ++|+.|++++|.+..+ |..|.++++|++|+|++|. +..+|.. +.++++|++|+|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~---l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK---LTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC---CCccChhHhCCcchhhEEECC
Confidence 456666677777777664 8999999999999987 5678999999999999998 8888875 5899999999999
Q ss_pred ccCCcccchh-hcCCCCCcEEeecCCCCCCccccccccC
Q 043039 622 FVGIEELPET-FCELFNLQNLDLRRCSKFKRLPQNIGKL 659 (949)
Q Consensus 622 ~~~i~~lp~~-l~~L~~L~~L~L~~~~~l~~lp~~i~~L 659 (949)
+|.++.+|.. +..+++|++|+|++|. +...|..+..+
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~~~~~l 127 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNP-WDCECRDIMYL 127 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSC-BCTTBGGGHHH
T ss_pred CCccceeCHHHhccccCCCEEEeCCCC-cccccccHHHH
Confidence 9999999876 8899999999999998 66666544433
No 155
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.88 E-value=3.6e-08 Score=103.33 Aligned_cols=208 Identities=11% Similarity=0.011 Sum_probs=128.7
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCccccc------ccceEEEEEeCCCCCHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSN------NFNVMIWVCVSDPFDVFR 247 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------~f~~~~wv~~~~~~~~~~ 247 (949)
..+.|||+++++|...|...-. .+..+.+.|+|++|+|||++|+.+.++..... .| .++.+++....+...
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~ 96 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HH
T ss_pred cccCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHH
Confidence 3488999999999988865432 23456889999999999999999988632211 12 466788888888899
Q ss_pred HHHHHHHhcCCCCCCCcc-hHHHHHHHHhh--hCCceEEEEEeCCCCCCcccHHHHHHhhhc-cCCCc--EEEEEccchh
Q 043039 248 VWKAIIENLDGYTPDLGE-LNTLHQLINNR--IGGKKVLLVLDDVWTEDGNKWESFQRCLIN-AHRGS--KILVTTRKET 321 (949)
Q Consensus 248 ~~~~i~~~l~~~~~~~~~-~~~~~~~l~~~--l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs--~iivTtr~~~ 321 (949)
++..|++++.+....... .+.+...+... -.++++++|||+++.-. ..+.+...+.. ....+ .||.++...+
T Consensus 97 ~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 97 LYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 999999999754322222 23333333321 24678999999996643 23334444321 11223 2333443321
Q ss_pred -----h----HhhhcCcceEeCCCCChHhHHHHHHHHhhccCCC-----------------------------------C
Q 043039 322 -----V----ARMIGSTCVISIEELSEPECWSLFKRFAFLNRSR-----------------------------------S 357 (949)
Q Consensus 322 -----v----~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~-----------------------------------~ 357 (949)
+ ...++ ...+.+.+.+.++-.+++.+++...... -
T Consensus 175 ~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 253 (318)
T 3te6_A 175 TIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKI 253 (318)
T ss_dssp CCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEEC
T ss_pred cchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccc
Confidence 1 11221 2478999999999999999987542210 1
Q ss_pred CchhHHHHHHHHHHhcCCCchHHHHHHhhh
Q 043039 358 DCKQLEEIGRKITWKCKGLPLAVKTIGSLL 387 (949)
Q Consensus 358 ~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 387 (949)
.+..++-+|++++...|-.-.|+.++-...
T Consensus 254 ~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~ 283 (318)
T 3te6_A 254 NNKITQLIAKNVANVSGSTEKAFKICEAAV 283 (318)
T ss_dssp CHHHHHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCChHHHHHHHHHHHH
Confidence 334566666666666777777776665544
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.83 E-value=7.5e-09 Score=99.55 Aligned_cols=100 Identities=25% Similarity=0.416 Sum_probs=87.6
Q ss_pred ceeEEEeCCccccccccccccccCCCCCCeeeecccCCccc-chhhcCCCCCcEEeecCCCCCCccccc-cccCCCCCee
Q 043039 588 CLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEEL-PETFCELFNLQNLDLRRCSKFKRLPQN-IGKLVNLRHL 665 (949)
Q Consensus 588 ~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~l-p~~l~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L 665 (949)
..+.++++++. +..+|..+. .+|++|+|++|.|+.+ |..+..+++|++|+|++|. +..+|.. +..+++|++|
T Consensus 10 ~~~~l~~s~n~---l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 10 SGTTVDCSGKS---LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp ETTEEECTTSC---CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCEEEeCCCC---cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEE
Confidence 35789999998 888998764 8999999999999988 5678999999999999998 7777765 5899999999
Q ss_pred eCCCcccccCCcC-CCCCCCCcccCccce
Q 043039 666 IFDEDDLDYMPKG-MGSLTGLRTLSEFVA 693 (949)
Q Consensus 666 ~l~~~~l~~~p~~-i~~l~~L~~L~~~~~ 693 (949)
++++|.++.+|.. +..+++|+.|++..|
T Consensus 84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCCccCEeCHHHhcCCCCCCEEEeCCC
Confidence 9999999999875 889999999986653
No 157
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.81 E-value=2e-08 Score=108.44 Aligned_cols=183 Identities=14% Similarity=0.129 Sum_probs=116.9
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCccccccc-ceEEEEEeCCCCCHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNF-NVMIWVCVSDPFDVFRVWKAI 252 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i 252 (949)
.+++|+++.++.+..++.... .+.+.++|++|+||||+|+.+++...- ..+ ...+.+..++...... +
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~-~--- 93 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS------MPHLLFAGPPGVGKTTAALALARELFG-ENWRHNFLELNASDERGINV-I--- 93 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC------CCEEEEESCTTSSHHHHHHHHHHHHHG-GGHHHHEEEEETTCHHHHHT-T---
T ss_pred HHhhCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhcC-CcccCceEEeeccccCchHH-H---
Confidence 459999999999999986532 234899999999999999999875211 111 1233444332111110 0
Q ss_pred HHhcCCCCCCCcchHHHHHHHHhh--h-CCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccchhh-Hhhh-c
Q 043039 253 IENLDGYTPDLGELNTLHQLINNR--I-GGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKETV-ARMI-G 327 (949)
Q Consensus 253 ~~~l~~~~~~~~~~~~~~~~l~~~--l-~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v-~~~~-~ 327 (949)
.......... + .+++.++|+|+++......++.+...+.....++++|+||..... ...+ .
T Consensus 94 --------------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 159 (327)
T 1iqp_A 94 --------------REKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 159 (327)
T ss_dssp --------------HHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred --------------HHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHh
Confidence 0011111110 1 256889999999876656677787777666677889988876432 1111 2
Q ss_pred CcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHHh
Q 043039 328 STCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIGS 385 (949)
Q Consensus 328 ~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 385 (949)
....+.+.+++.++..+++...+...+.. -..+....|++.++|.|..+..+..
T Consensus 160 r~~~~~~~~l~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 160 RCAIFRFRPLRDEDIAKRLRYIAENEGLE----LTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHTTTCE----ECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCcEEEecCCCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 23478999999999999998876533221 1245567788899999987655443
No 158
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.71 E-value=2.4e-07 Score=102.06 Aligned_cols=195 Identities=13% Similarity=0.168 Sum_probs=116.9
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAII 253 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 253 (949)
..++||+..++.+...+.... ..+.+.|+|++|+||||+|+.+.+.......+.. ..+... .....+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~~----~~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVC----DNCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSSS----HHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCccc----HHHHHHh
Confidence 359999999999999986532 2347889999999999999998764221111100 000000 0011111
Q ss_pred Hh-------cCCC-CCCCcchHHHHHHHHhh-hCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccchh-hH
Q 043039 254 EN-------LDGY-TPDLGELNTLHQLINNR-IGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKET-VA 323 (949)
Q Consensus 254 ~~-------l~~~-~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~ 323 (949)
.. +... .....+...+...+... ..+++.+||+||++......++.+...+.....+..+|++|.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 00 0000 01112233333322211 235678999999977665667777777766556677777776532 21
Q ss_pred hhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHH
Q 043039 324 RMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIG 384 (949)
Q Consensus 324 ~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 384 (949)
..+ .....+++.+++.++..+++.+.+...+.... .+....|++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~----~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHCCCCHHHHHHHH
Confidence 111 23468999999999999999887643322111 3456778899999998876654
No 159
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=8.3e-08 Score=103.54 Aligned_cols=289 Identities=12% Similarity=0.041 Sum_probs=153.9
Q ss_pred cCCceEEEEEeccCCCCcccccC-CCCceEEEecCCCCCCcchhhccCCceeEEEeCCcccccccccc-ccccC------
Q 043039 540 YEKLRHSILVLHYNASFPVSIFN-AKKLRSLLIQGYSLQHMPSFFDQLTCLRALRIGKYGDDAIERIP-NGIEK------ 611 (949)
Q Consensus 540 ~~~~r~l~l~~~~~~~l~~~~~~-~~~Lr~L~l~~~~l~~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp-~~i~~------ 611 (949)
..++.++.+.+.....-...+.. +++|++|+|++|.+.........++.++.+.+..+. +| ..+.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~------I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANF------VPAYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTE------ECTTTTEEEETTEE
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccc------cCHHHhcccccccc
Confidence 35677777776432110112233 788999999999887211111122224555555443 33 24566
Q ss_pred --CCCCCeeeecccCCcccch-hhcCCCCCcEEeecCCCCCCccc-cccccCCCCCeeeCCCcccccCCcCCCCCCCCcc
Q 043039 612 --LIHLRYLKLFFVGIEELPE-TFCELFNLQNLDLRRCSKFKRLP-QNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRT 687 (949)
Q Consensus 612 --l~~L~~L~L~~~~i~~lp~-~l~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~ 687 (949)
+.+|+.|+|.. .++.++. .|.++++|+.|++..|. +..++ ..+..+.++..+..+.+.... ....+..
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~------~~~~i~~ 169 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYR------FKNRWEH 169 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHH------TSTTTTT
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhh------ccccccc
Confidence 99999999998 8888864 58899999999999887 44554 445666666665543311100 0000110
Q ss_pred cCccceecCCCccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHH
Q 043039 688 LSEFVAVSGGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQA 767 (949)
Q Consensus 688 L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 767 (949)
.. +.++..|. ..+.+.. ...+.......-....++..+.+..+-... .
T Consensus 170 ~~-----------------f~~~~~L~---~~i~~~~---~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~---------~ 217 (329)
T 3sb4_A 170 FA-----------------FIEGEPLE---TTIQVGA---MGKLEDEIMKAGLQPRDINFLTIEGKLDNA---------D 217 (329)
T ss_dssp SC-----------------EEESCCCE---EEEEECT---TCCHHHHHHHTTCCGGGCSEEEEEECCCHH---------H
T ss_pred cc-----------------cccccccc---eeEEecC---CCcHHHHHhhcccCccccceEEEeeeecHH---------H
Confidence 00 11111111 0111111 111211111111234556666665542111 0
Q ss_pred HhhcCCCCCCcCceEEeccccCCCCCc-hhhcccCCcEEEEeccCCCCCCC-CCCCCCCcc-eeeecCCCCcEEeCCccc
Q 043039 768 IIEALRPHPNLESLQISFYEVKARFPN-WILSLNKLRMLCLSFCKKCEIMP-PLGKLQSLE-VLDIWEMHGIKRVGDEVL 844 (949)
Q Consensus 768 ~~~~l~~~~~L~~L~L~~~~~~~~~p~-~~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~-~L~L~~~~~l~~~~~~~~ 844 (949)
.......+++|+.|+|.+|.+.. +|. .+..+++|+.|+|.++ +....+ .|..+++|+ .|.+.+ .++.++...+
T Consensus 218 ~~~l~~~~~~L~~l~L~~n~i~~-I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF 293 (329)
T 3sb4_A 218 FKLIRDYMPNLVSLDISKTNATT-IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAF 293 (329)
T ss_dssp HHHHHHHCTTCCEEECTTBCCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTT
T ss_pred HHHHHHhcCCCeEEECCCCCcce-ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhh
Confidence 11111236789999998888776 554 4668889999999887 333222 288889998 998866 4555554322
Q ss_pred CCCCCCCCccceeeeccccccccccccccccccccccceec
Q 043039 845 GIEIIAFPRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLA 885 (949)
Q Consensus 845 ~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~ 885 (949)
. .+++|+.|.+.+ .+++. ..+..+..+++|+.|.
T Consensus 294 ~----~c~~L~~l~l~~-n~i~~--I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 294 M----GCDNLRYVLATG-DKITT--LGDELFGNGVPSKLIY 327 (329)
T ss_dssp T----TCTTEEEEEECS-SCCCE--ECTTTTCTTCCCCEEE
T ss_pred h----CCccCCEEEeCC-CccCc--cchhhhcCCcchhhhc
Confidence 2 456666666532 12222 2223455677777664
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.63 E-value=6.1e-08 Score=105.58 Aligned_cols=100 Identities=18% Similarity=0.221 Sum_probs=61.6
Q ss_pred EEecCC-CCCCcchhhccCCceeEEEeCC-cccccccccc-ccccCCCCCCeeeecccCCcccch-hhcCCCCCcEEeec
Q 043039 569 LLIQGY-SLQHMPSFFDQLTCLRALRIGK-YGDDAIERIP-NGIEKLIHLRYLKLFFVGIEELPE-TFCELFNLQNLDLR 644 (949)
Q Consensus 569 L~l~~~-~l~~l~~~~~~l~~Lr~L~L~~-~~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~l~~L~~L~~L~L~ 644 (949)
++++++ .+..+|. +..+++|+.|+|++ |. +..+| ..+++|++|++|+|++|.|+.+|+ .|.+|++|++|+|+
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~---l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQH---LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSS---CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCC---CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 455555 5666666 66666666676664 55 55554 346666677777777666666543 45666667777776
Q ss_pred CCCCCCccccccccCCCCCeeeCCCcccc
Q 043039 645 RCSKFKRLPQNIGKLVNLRHLIFDEDDLD 673 (949)
Q Consensus 645 ~~~~l~~lp~~i~~L~~L~~L~l~~~~l~ 673 (949)
+|. +..+|..+....+|+.|++.+|.+.
T Consensus 89 ~N~-l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNA-LESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SSC-CSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CCc-cceeCHHHcccCCceEEEeeCCCcc
Confidence 665 5556655444334666666666554
No 161
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.61 E-value=2.2e-07 Score=99.78 Aligned_cols=182 Identities=15% Similarity=0.148 Sum_probs=112.5
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCccccccc-ceEEEEEeCCCCCHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNF-NVMIWVCVSDPFDVFRVWKAI 252 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i 252 (949)
.+++|++..++.+.+++... ..+.+.++|++|+|||++|+.+.+... ...+ ..++.++.+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~-------- 81 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERG-------- 81 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTC--------
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccC--------
Confidence 45899999999999988542 222389999999999999999887521 1111 1223344433111
Q ss_pred HHhcCCCCCCCcchHHHHHHHHhh--h-CCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccchh-hHhhh-c
Q 043039 253 IENLDGYTPDLGELNTLHQLINNR--I-GGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKET-VARMI-G 327 (949)
Q Consensus 253 ~~~l~~~~~~~~~~~~~~~~l~~~--l-~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~-~ 327 (949)
.............. + .+++.++|+|+++.......+.+...+.....++++|+||.... +...+ .
T Consensus 82 ----------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 82 ----------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp ----------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred ----------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 11111111111111 1 25688999999976554445556655555556778888876543 22211 2
Q ss_pred CcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHH
Q 043039 328 STCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIG 384 (949)
Q Consensus 328 ~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 384 (949)
....+.+.+++.++..+++...+...+... ..+....+++.++|.+..+....
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i----~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVKI----TEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCCCB----CHHHHHHHHHTTTTCHHHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 245899999999999999988775433211 24456778889999998655443
No 162
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.51 E-value=4.1e-07 Score=93.25 Aligned_cols=174 Identities=16% Similarity=0.139 Sum_probs=102.3
Q ss_pred Cccccc---hhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHH
Q 043039 174 SEVCGR---NEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWK 250 (949)
Q Consensus 174 ~~~~Gr---~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 250 (949)
..|+|+ +..++.+..+.... ..+.+.|+|++|+||||+|+.+++... .....+.|++++.-.+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~~~--~~~~~~~~~~~~~~~~~----- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACARAN--ELERRSFYIPLGIHASI----- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEGGGGGGS-----
T ss_pred hhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEHHHHHHH-----
Confidence 346663 35666776666432 245788999999999999999987522 22334667766431110
Q ss_pred HHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCccc--HHHHHHhhhcc-CCC-cEEEEEccchh-----
Q 043039 251 AIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNK--WESFQRCLINA-HRG-SKILVTTRKET----- 321 (949)
Q Consensus 251 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~iivTtr~~~----- 321 (949)
+ .+ .+ +.+ .++.+||+||++...... .+.+...+... ..+ .++|+||+...
T Consensus 95 -----~-------~~------~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 95 -----S-------TA------LL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp -----C-------GG------GG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred -----H-------HH------HH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 0 00 00 111 345699999996643322 33344443221 122 24788776422
Q ss_pred ----hHhhhcCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHH
Q 043039 322 ----VARMIGSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIG 384 (949)
Q Consensus 322 ----v~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 384 (949)
+...+.....+.+.+++.++..+++...+...+... ..+..+.+++.++|.+-.+..+.
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQL----PEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCC----CHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHccCCHHHHHHHH
Confidence 112222226899999999999999998775332211 24556778888999887665543
No 163
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.49 E-value=4.9e-06 Score=89.98 Aligned_cols=179 Identities=15% Similarity=0.153 Sum_probs=109.2
Q ss_pred cCccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 043039 173 VSEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAI 252 (949)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 252 (949)
-..++|++..++.+..++..... .....+.+.|+|++|+|||++|+.+.+. .... .+.++......
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~---~~~~~~~~~~~-------- 93 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE--MSAN---IKTTAAPMIEK-------- 93 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCC---EEEEEGGGCCS--------
T ss_pred HHHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEecchhccc--------
Confidence 34699999999999998865311 1123346899999999999999999874 2222 23333322111
Q ss_pred HHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccC------------------CCcEEE
Q 043039 253 IENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAH------------------RGSKIL 314 (949)
Q Consensus 253 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~ii 314 (949)
.......+.. ..+..+|+||++..........+...+.... ++..+|
T Consensus 94 -------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 94 -------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp -------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred -------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 1112222222 2356799999997765555555666554332 124566
Q ss_pred EEccchhh-Hhhh-cC-cceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHH
Q 043039 315 VTTRKETV-ARMI-GS-TCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIG 384 (949)
Q Consensus 315 vTtr~~~v-~~~~-~~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 384 (949)
.+|..... ...+ .. ...+.+.+++.++...++.+.+..... ....+....|++.+.|.|-.+..+.
T Consensus 159 ~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 159 GATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK----TCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----EECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 66654322 1111 11 358999999999999999887753321 1224556778888999996555443
No 164
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.48 E-value=2.8e-06 Score=93.55 Aligned_cols=125 Identities=9% Similarity=0.069 Sum_probs=65.4
Q ss_pred CcCceEEeccccCCCCCchhhcccCCcEEEEeccCCC----CCCC--CCCCCCCcceeeecCCCCcEEeCCcccCCCCCC
Q 043039 777 NLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKC----EIMP--PLGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIA 850 (949)
Q Consensus 777 ~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~----~~~~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 850 (949)
+|+.+.|.. .+...-+..+..+++|+.+.+.++... ..++ .|..+++|+.+.|.+ .++.++...+. .
T Consensus 249 ~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~----~ 321 (401)
T 4fdw_A 249 GITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLG----G 321 (401)
T ss_dssp CCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTT----T
T ss_pred CccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhc----C
Confidence 455555522 222211334455666666666655432 1122 266777777777753 24444443222 3
Q ss_pred CCccceeeeccccccccccccccccccccccceeccccCccCcCCCC-CCCCC-CCcceEEEccCC
Q 043039 851 FPRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKMLPD-QVLRS-TTLKKLEINDCP 914 (949)
Q Consensus 851 f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l-~~L~~L~l~~c~ 914 (949)
+++|+.+.+.+ +++.+. +..+..+ +|+.|.+.+| .+..++. .+..+ .+++.|.+-...
T Consensus 322 c~~L~~l~lp~--~l~~I~--~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 322 NRKVTQLTIPA--NVTQIN--FSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CCSCCEEEECT--TCCEEC--TTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CCCccEEEECc--cccEEc--HHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHH
Confidence 45566666632 222221 2335567 8999999887 4444443 34455 367888887643
No 165
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.47 E-value=1.7e-06 Score=94.29 Aligned_cols=194 Identities=13% Similarity=0.109 Sum_probs=115.1
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCccccccc-ceEEEEEeCCCCCHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNF-NVMIWVCVSDPFDVFRVWKAI 252 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i 252 (949)
..++|+++.++.+..++.... .+.+.++|++|+||||+|+.+.+.......+ ..++.+..+.......+ .+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTH
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHH
Confidence 468999999999999986432 2238899999999999999998752111111 12333444433333222 222
Q ss_pred HHhcC-CCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccchh-hHhhh-cCc
Q 043039 253 IENLD-GYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKET-VARMI-GST 329 (949)
Q Consensus 253 ~~~l~-~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~-~~~ 329 (949)
+.... ......... .....-.+++-+|++|++..........+...+.......++|++|.... +...+ ...
T Consensus 110 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 21111 000000000 00111124567999999976655556667777766556677888775432 21111 113
Q ss_pred ceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHH
Q 043039 330 CVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTI 383 (949)
Q Consensus 330 ~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 383 (949)
..+.+.+++.++....+...+...+.... .+..+.|++.++|.|..+..+
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENVKCD----DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHTSSCHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 47899999999999999887643322112 456778889999999865443
No 166
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.45 E-value=4.9e-07 Score=88.92 Aligned_cols=151 Identities=16% Similarity=0.153 Sum_probs=83.3
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccc---c--ccceEEEEEeCCCCCHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVS---N--NFNVMIWVCVSDPFDVFRV 248 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~--~f~~~~wv~~~~~~~~~~~ 248 (949)
..++||+++++++.+++... ..+.+.|+|++|+|||++|+.+++..... . ....+++++++. .
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 89 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L 89 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------H
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------H
Confidence 45899999999999998652 23467899999999999999988752110 0 112344444321 0
Q ss_pred HHHHHHhcCCCCCCCcchHHHHHHHHhhh--CCceEEEEEeCCCCCC--------cccHHHHHHhhhccCCCcEEEEEcc
Q 043039 249 WKAIIENLDGYTPDLGELNTLHQLINNRI--GGKKVLLVLDDVWTED--------GNKWESFQRCLINAHRGSKILVTTR 318 (949)
Q Consensus 249 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTtr 318 (949)
. .. .....+.......+.+.+ .+++.+|||||++... ......+...+.. .+..+|.||.
T Consensus 90 ----~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~ 159 (195)
T 1jbk_A 90 ----V---AG-AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATT 159 (195)
T ss_dssp ----H---TT-TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEEC
T ss_pred ----h---cc-CCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCC
Confidence 0 00 000011111111111111 3668899999996532 1223334333322 2445777776
Q ss_pred chhhHh------hh-cCcceEeCCCCChHhHHHHH
Q 043039 319 KETVAR------MI-GSTCVISIEELSEPECWSLF 346 (949)
Q Consensus 319 ~~~v~~------~~-~~~~~~~l~~l~~~~~~~l~ 346 (949)
...... .+ .....+.+.+++.++..+++
T Consensus 160 ~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 160 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 554221 11 22236888899888876654
No 167
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.44 E-value=3.2e-07 Score=99.88 Aligned_cols=97 Identities=14% Similarity=0.114 Sum_probs=82.2
Q ss_pred EEEeCCc-cccccccccccccCCCCCCeeeecc-cCCcccc-hhhcCCCCCcEEeecCCCCCCccc-cccccCCCCCeee
Q 043039 591 ALRIGKY-GDDAIERIPNGIEKLIHLRYLKLFF-VGIEELP-ETFCELFNLQNLDLRRCSKFKRLP-QNIGKLVNLRHLI 666 (949)
Q Consensus 591 ~L~L~~~-~~~~~~~lp~~i~~l~~L~~L~L~~-~~i~~lp-~~l~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~ 666 (949)
.++++++ . +..+|. +..+.+|++|+|++ |.+..+| ..|..|++|++|+|++|. +..+| ..+.+|++|++|+
T Consensus 12 ~v~~~~~n~---l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 12 GLRCTRDGA---LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp CEECCSSCC---CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEE
T ss_pred EEEcCCCCC---CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEe
Confidence 4577776 5 888999 99999999999996 9999987 569999999999999998 66655 5689999999999
Q ss_pred CCCcccccCCcCCCCCCCCcccCccc
Q 043039 667 FDEDDLDYMPKGMGSLTGLRTLSEFV 692 (949)
Q Consensus 667 l~~~~l~~~p~~i~~l~~L~~L~~~~ 692 (949)
+++|.++.+|..+.....|+.|++..
T Consensus 87 l~~N~l~~~~~~~~~~~~L~~l~l~~ 112 (347)
T 2ifg_A 87 LSFNALESLSWKTVQGLSLQELVLSG 112 (347)
T ss_dssp CCSSCCSCCCSTTTCSCCCCEEECCS
T ss_pred CCCCccceeCHHHcccCCceEEEeeC
Confidence 99999999997654444488888655
No 168
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.41 E-value=9.3e-06 Score=89.42 Aligned_cols=209 Identities=13% Similarity=0.167 Sum_probs=100.5
Q ss_pred CCceEEEecCCCCCCcch-hhccCCceeEEEeCCccccccccccc-cccCCCCCCeeeecccCCcccc-hhhcCCCCCcE
Q 043039 564 KKLRSLLIQGYSLQHMPS-FFDQLTCLRALRIGKYGDDAIERIPN-GIEKLIHLRYLKLFFVGIEELP-ETFCELFNLQN 640 (949)
Q Consensus 564 ~~Lr~L~l~~~~l~~l~~-~~~~l~~Lr~L~L~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp-~~l~~L~~L~~ 640 (949)
..+..+.+.++ ++.++. .|.++ +|+.+.+..+ +..+++ .+.+ .+|+.+.+.. .+..++ ..|.++++|+.
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~----i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG----LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT----CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC----ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence 44555554332 334432 34443 4666666543 444433 2434 2466666654 444443 34556666666
Q ss_pred EeecCCCCCCccccccccCCCCCeeeCCCcccccCCc-CCCCCCCCcccCccceecCCCccCCCccCcccccccccCCCc
Q 043039 641 LDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPK-GMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRHMNHLRGS 719 (949)
Q Consensus 641 L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~ 719 (949)
+++..|. +..+|.......+|+.+.+.. .++.++. .+.++++|+.+.+..+ +..+
T Consensus 185 l~l~~n~-l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-------------------l~~I--- 240 (401)
T 4fdw_A 185 ADLSKTK-ITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-------------------VSTI--- 240 (401)
T ss_dssp EECTTSC-CSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-------------------CCEE---
T ss_pred eecCCCc-ceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-------------------ccCc---
Confidence 6666554 555555444455666665542 2444432 2444444544432110 0000
Q ss_pred eEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccC-----CCCCc
Q 043039 720 LKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVK-----ARFPN 794 (949)
Q Consensus 720 l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~-----~~~p~ 794 (949)
. ...+.+ .+|+.+.+.. .+... -...|..+++|+.+.+.++... ..-+.
T Consensus 241 ---------~------~~aF~~-~~L~~i~lp~-~i~~I---------~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~ 294 (401)
T 4fdw_A 241 ---------G------QEAFRE-SGITTVKLPN-GVTNI---------ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPY 294 (401)
T ss_dssp ---------C------TTTTTT-CCCSEEEEET-TCCEE---------CTTTTTTCTTCCEEEEESSCCCCCTTCEECTT
T ss_pred ---------c------cccccc-CCccEEEeCC-CccEE---------ChhHhhCCCCCCEEEeCCccccCCcccEECHH
Confidence 0 011222 4566666632 22211 1235666677777777665543 11234
Q ss_pred hhhcccCCcEEEEeccCCCCCCC-CCCCCCCcceeeec
Q 043039 795 WILSLNKLRMLCLSFCKKCEIMP-PLGKLQSLEVLDIW 831 (949)
Q Consensus 795 ~~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~ 831 (949)
.+..+++|+.+.|.++ +...-. .|..+++|+.+.|.
T Consensus 295 aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 295 CLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp TTTTCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEEC
T ss_pred HhhCCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEEC
Confidence 4556677777777643 222111 26667777777773
No 169
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.35 E-value=5.5e-06 Score=94.64 Aligned_cols=197 Identities=16% Similarity=0.191 Sum_probs=111.0
Q ss_pred CccccchhHHHHHHHHHccCCC-----------CCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCC
Q 043039 174 SEVCGRNEEKNALKGKLLSETA-----------EQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDP 242 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~-----------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 242 (949)
.+++|++..++++.+++..... .+.+..+.+.|+|++|+||||+|+.+++.. .+ .++.++++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCCCc
Confidence 4699999999999999965210 001134688999999999999999998853 12 2445555554
Q ss_pred CCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCc---ccHHHHHHhhhccCCCcEEEEEccc
Q 043039 243 FDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDG---NKWESFQRCLINAHRGSKILVTTRK 319 (949)
Q Consensus 243 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~---~~~~~l~~~l~~~~~gs~iivTtr~ 319 (949)
.... .....+........-..-...... .....+++.+||+|+++.... ..+..+...+... +..||+++..
T Consensus 114 ~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~ 188 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNE 188 (516)
T ss_dssp CCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESC
T ss_pred chHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcC
Confidence 4432 222222221110000000000000 001236788999999965422 2234555555443 3346665554
Q ss_pred hh---hHhhhcCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCc-hHHHHHH
Q 043039 320 ET---VARMIGSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLP-LAVKTIG 384 (949)
Q Consensus 320 ~~---v~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~ 384 (949)
.. +.........+.+.+++.++..+++...+...+....+ +....|++.++|.+ -++..+.
T Consensus 189 ~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~----~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 189 RNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP----NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp TTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT----THHHHHHHHTTTCHHHHHHHHT
T ss_pred CCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHcCCcHHHHHHHHH
Confidence 22 22211224578999999999999998877544332222 33567788898844 4555543
No 170
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.34 E-value=4.2e-06 Score=93.26 Aligned_cols=163 Identities=15% Similarity=0.158 Sum_probs=97.7
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCc
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGK 280 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 280 (949)
...+.|+|++|+||||||+.+++.......-..++++++. .+..++...+... .. ..+.+.++.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~-----~~----~~~~~~~~~~ 194 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLVDSMKEG-----KL----NEFREKYRKK 194 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH------HHHHHHHHHHHTT-----CH----HHHHHHHTTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHHHHHHcc-----cH----HHHHHHhcCC
Confidence 5678999999999999999998852111111234555543 2334444443321 11 1233333435
Q ss_pred eEEEEEeCCCCCCc--ccHHHHHHhhhc-cCCCcEEEEEccch---------hhHhhhcCcceEeCCCCChHhHHHHHHH
Q 043039 281 KVLLVLDDVWTEDG--NKWESFQRCLIN-AHRGSKILVTTRKE---------TVARMIGSTCVISIEELSEPECWSLFKR 348 (949)
Q Consensus 281 ~~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~l~~~~~~~l~~~ 348 (949)
+-+|++||++.... ...+.+...+.. ...|..||+||... .+...+.....+.+.+++.++..+++.+
T Consensus 195 ~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~ 274 (440)
T 2z4s_A 195 VDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARK 274 (440)
T ss_dssp CSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHH
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHH
Confidence 67999999965432 223344444432 24577899988762 2222333335789999999999999998
Q ss_pred HhhccCCCCCchhHHHHHHHHHHhcCCCchHHHH
Q 043039 349 FAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKT 382 (949)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 382 (949)
.+...+...+ .++...|++.+.|.+-.+..
T Consensus 275 ~~~~~~~~i~----~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 275 MLEIEHGELP----EEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHTCCCC----TTHHHHHHHHCCSCHHHHHH
T ss_pred HHHHcCCCCC----HHHHHHHHHhcCCCHHHHHH
Confidence 8753332122 23356677888898865543
No 171
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.31 E-value=4.3e-06 Score=91.12 Aligned_cols=196 Identities=12% Similarity=0.112 Sum_probs=109.5
Q ss_pred CccccchhHHHHHHHHH-ccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCc-c-cccc--cce---------------
Q 043039 174 SEVCGRNEEKNALKGKL-LSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDA-D-VSNN--FNV--------------- 233 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L-~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~-~-~~~~--f~~--------------- 233 (949)
.+++|++..++.+.+++ .... ... +.|+|+.|+||||+|+.+.+.. . ..+. ++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-----~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-----LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-----CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-----CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 45899999999998887 4321 233 8999999999999999877631 0 0000 000
Q ss_pred -----EEEEEeCCCC-CHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhcc
Q 043039 234 -----MIWVCVSDPF-DVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINA 307 (949)
Q Consensus 234 -----~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~ 307 (949)
.+.+..+... ......++++..+.....- .... .+ ..+.+++-++|+|++...+....+.+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV----DFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhccc----cccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 1111111100 0000122222222110000 0000 00 001335679999999887666667777777665
Q ss_pred CCCcEEEEEccchh-hHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHH
Q 043039 308 HRGSKILVTTRKET-VARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIG 384 (949)
Q Consensus 308 ~~gs~iivTtr~~~-v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 384 (949)
..+..+|++|.... +...+ .....+++.+++.++..+++...+...+...+. .+....|++.++|.+-.+..+.
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET---KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC---SHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHcCCCHHHHHHHH
Confidence 56778888887632 22222 234689999999999999998877433221110 2445678888999887655444
No 172
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.29 E-value=1.4e-05 Score=82.78 Aligned_cols=187 Identities=12% Similarity=0.088 Sum_probs=98.6
Q ss_pred CccccchhHHHHHHHHHcc---CCCC---CCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 043039 174 SEVCGRNEEKNALKGKLLS---ETAE---QPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFR 247 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~---~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 247 (949)
.+++|.+..++.+.+++.. ...- +....+.+.|+|++|+|||++|+.+++.. ... .+.+..+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~--~~~---~~~~~~~~~~~~-- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA--QVP---FLAMAGAEFVEV-- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH--TCC---EEEEETTTTSSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh--CCC---EEEechHHHHhh--
Confidence 4689999888777665432 1100 01233457899999999999999998852 222 344444431110
Q ss_pred HHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCC------------cccH---HHHHHhhhc--cCCC
Q 043039 248 VWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTED------------GNKW---ESFQRCLIN--AHRG 310 (949)
Q Consensus 248 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------------~~~~---~~l~~~l~~--~~~g 310 (949)
........+...+.......+.+|+||+++... .... ..+...+.. ...+
T Consensus 79 -------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 79 -------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp -------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred -------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 000111122223333333567899999996531 1111 222222222 1234
Q ss_pred cEEEEEccchhhH-hhh-c---CcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCch-HHHHH
Q 043039 311 SKILVTTRKETVA-RMI-G---STCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPL-AVKTI 383 (949)
Q Consensus 311 s~iivTtr~~~v~-~~~-~---~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 383 (949)
..||.||...... ... . -...+.+...+.++..+++..++...... . ........+++.+.|.+- .+..+
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-~--~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT-Q--SSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC-B--THHHHHHHHHHTCTTCCHHHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC-c--chhhHHHHHHHHCCCCCHHHHHHH
Confidence 5566666554321 111 1 13577889999999999998877543221 1 112234677888887654 44433
No 173
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.29 E-value=6.9e-06 Score=88.15 Aligned_cols=177 Identities=14% Similarity=0.110 Sum_probs=104.8
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAII 253 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 253 (949)
.+++|++..++.+.+++.... ..+++.+.|++|+|||++|+.+.+.. ...++.++.+.. .. ..++..+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~l-----~~~~~~i~~~~~-~~-~~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHDV-----NADMMFVNGSDC-KI-DFVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHHT-----TEEEEEEETTTC-CH-HHHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHHh-----CCCEEEEccccc-CH-HHHHHHH
Confidence 469999999999999997432 33578888999999999999998752 123445554431 12 1111111
Q ss_pred HhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCC-cccHHHHHHhhhccCCCcEEEEEccchhh-Hhhh-cCcc
Q 043039 254 ENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTED-GNKWESFQRCLINAHRGSKILVTTRKETV-ARMI-GSTC 330 (949)
Q Consensus 254 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTtr~~~v-~~~~-~~~~ 330 (949)
...... ....+++-+||+|+++... ....+.+...+.....+.++|+||....- ...+ ....
T Consensus 94 ~~~~~~---------------~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~ 158 (324)
T 3u61_B 94 TNFASA---------------ASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCR 158 (324)
T ss_dssp HHHHHB---------------CCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSE
T ss_pred HHHHhh---------------cccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCc
Confidence 111000 0112467899999997654 44556666666554456788888876431 1111 1134
Q ss_pred eEeCCCCChHhHHHH-------HHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHH
Q 043039 331 VISIEELSEPECWSL-------FKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAV 380 (949)
Q Consensus 331 ~~~l~~l~~~~~~~l-------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 380 (949)
.+++.+++.++-.++ +...+...+..... .+....|++.++|.+..+
T Consensus 159 ~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 159 VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD---MKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC---HHHHHHHHHHTCSCTTHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHhCCCCHHHH
Confidence 799999998874333 32222222211111 255677888888877643
No 174
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.28 E-value=1.8e-07 Score=102.19 Aligned_cols=106 Identities=13% Similarity=0.225 Sum_probs=61.0
Q ss_pred CCceEEEecCCCCCCc-----chhhc-cCCceeEEEeCCcccccccc--ccccccCCCCCCeeeecccCCccc-----ch
Q 043039 564 KKLRSLLIQGYSLQHM-----PSFFD-QLTCLRALRIGKYGDDAIER--IPNGIEKLIHLRYLKLFFVGIEEL-----PE 630 (949)
Q Consensus 564 ~~Lr~L~l~~~~l~~l-----~~~~~-~l~~Lr~L~L~~~~~~~~~~--lp~~i~~l~~L~~L~L~~~~i~~l-----p~ 630 (949)
+.|+.|++++|.++.. ...+. ..++|+.|+|++|. +.. +..-...+.+|++|+|++|.+... ..
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~---l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ---LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC---CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC---CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 5577777777776532 22222 23577777777776 322 111122455677777777776532 22
Q ss_pred hh-cCCCCCcEEeecCCCCCC-----ccccccccCCCCCeeeCCCcccc
Q 043039 631 TF-CELFNLQNLDLRRCSKFK-----RLPQNIGKLVNLRHLIFDEDDLD 673 (949)
Q Consensus 631 ~l-~~L~~L~~L~L~~~~~l~-----~lp~~i~~L~~L~~L~l~~~~l~ 673 (949)
.+ ...++|++|+|++|. +. .++..+..+++|++|++++|.++
T Consensus 149 ~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp HHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred HHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 22 235677777777776 32 24445566677777777766554
No 175
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.28 E-value=5.9e-08 Score=104.95 Aligned_cols=141 Identities=18% Similarity=0.093 Sum_probs=81.4
Q ss_pred cCCCCCCcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCCC-CCCC--CCCCCcceeeecCCCCc--EEeCC-ccc
Q 043039 771 ALRPHPNLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEI-MPPL--GKLQSLEVLDIWEMHGI--KRVGD-EVL 844 (949)
Q Consensus 771 ~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~-~~~l--~~l~~L~~L~L~~~~~l--~~~~~-~~~ 844 (949)
.+..+|+|++|+|++|.... ++. + .+++|++|+|..|.+... +..+ ..+|+|++|+|+.+... ...+. .+.
T Consensus 167 ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 34556788888888774333 444 3 378888888887764331 1122 36788888888532110 00000 000
Q ss_pred -CCCCCCCCccceeeeccccccccccccccccccccccceeccccCccCcC-----CCCCCCCCCCcceEEEccCCC
Q 043039 845 -GIEIIAFPRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKM-----LPDQVLRSTTLKKLEINDCPI 915 (949)
Q Consensus 845 -~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-----lp~~~~~l~~L~~L~l~~c~~ 915 (949)
......||+|+.|.+.++.--......-.....+|+|++|+|+.| .++. ++.++.++++|+.|++++|..
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 011125888999988765422111100011235889999999877 4542 455556778899999988863
No 176
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.27 E-value=9.7e-06 Score=85.20 Aligned_cols=184 Identities=16% Similarity=0.169 Sum_probs=100.8
Q ss_pred cCccccchhHHHHHHHHHccCCCC-------CCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCH
Q 043039 173 VSEVCGRNEEKNALKGKLLSETAE-------QPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDV 245 (949)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 245 (949)
-..++|.++.+++|.+.+...... +-...+.+.|+|++|+|||++|+.+++.. ... .+.+..+.
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~--~~~---~~~v~~~~---- 86 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET--NAT---FIRVVGSE---- 86 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT--TCE---EEEEEGGG----
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh--CCC---EEEEehHH----
Confidence 356999999999998887432000 00123468899999999999999998752 222 22333321
Q ss_pred HHHHHHHHHhcCCCCCCCcch-HHHHHHHHhhhCCceEEEEEeCCCCC-----------CcccHHHHHHhhh-----ccC
Q 043039 246 FRVWKAIIENLDGYTPDLGEL-NTLHQLINNRIGGKKVLLVLDDVWTE-----------DGNKWESFQRCLI-----NAH 308 (949)
Q Consensus 246 ~~~~~~i~~~l~~~~~~~~~~-~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~~~~~~~l~~~l~-----~~~ 308 (949)
+.... .... ......+......++.+|+||+++.. +......+...+. ...
T Consensus 87 ----------~~~~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 87 ----------LVKKF--IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp ----------GCCCS--TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred ----------HHHhc--cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 11110 1111 11222233333456789999999431 1111222333332 123
Q ss_pred CCcEEEEEccchhhHh-hh----cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCC-CchHHHH
Q 043039 309 RGSKILVTTRKETVAR-MI----GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKG-LPLAVKT 382 (949)
Q Consensus 309 ~gs~iivTtr~~~v~~-~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~ 382 (949)
.+..||.||....... .. .-...+.+...+.++..++|..++..... ..... ...+++.+.| .|-.+..
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHHH
Confidence 4567777877543221 11 11347899999999999999988743322 11222 3445556666 4544444
No 177
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.27 E-value=2.5e-05 Score=86.34 Aligned_cols=305 Identities=11% Similarity=0.094 Sum_probs=147.0
Q ss_pred ccccCCCCceEEEecCCCCCCcch-hhccCCceeEEEeCCccccccccccc-cccCCCCCCeeeecccCCcccc-hhhcC
Q 043039 558 VSIFNAKKLRSLLIQGYSLQHMPS-FFDQLTCLRALRIGKYGDDAIERIPN-GIEKLIHLRYLKLFFVGIEELP-ETFCE 634 (949)
Q Consensus 558 ~~~~~~~~Lr~L~l~~~~l~~l~~-~~~~l~~Lr~L~L~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp-~~l~~ 634 (949)
.+|.+|.+|+++.+.. .++.+.. .|.+|.+|+.+++..+ +..+++ .+.++..|+.+.+..+ +..+. ..+.+
T Consensus 65 ~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~----l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~ 138 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS----VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG 138 (394)
T ss_dssp TTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT----CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred HHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC----ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence 4677888999988864 3666644 5888889999888654 444543 4677777877666433 33222 22333
Q ss_pred CCCCcEEeecCCCCCCcc-ccccccCCCCCeeeCCCcccccCCc-CCCCCCCCcccCccceecCCCccCCCccCcccccc
Q 043039 635 LFNLQNLDLRRCSKFKRL-PQNIGKLVNLRHLIFDEDDLDYMPK-GMGSLTGLRTLSEFVAVSGGGKYGSKACNLDGLRH 712 (949)
Q Consensus 635 L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~ 712 (949)
+..+....... ...+ ...+..+++|+.+.+..+ +..++. .+..+.+|+.+.+..++..- ....+..+..
T Consensus 139 ~~~~~~~~~~~---~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~~~~I-----~~~~F~~~~~ 209 (394)
T 4fs7_A 139 CDFKEITIPEG---VTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRNLKII-----RDYCFAECIL 209 (394)
T ss_dssp CCCSEEECCTT---CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTTCCEE-----CTTTTTTCTT
T ss_pred ccccccccCcc---ccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCCceEe-----Cchhhccccc
Confidence 33222222222 1111 124556666666665432 233332 35556666665532211000 0111122222
Q ss_pred cccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCCC
Q 043039 713 MNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKARF 792 (949)
Q Consensus 713 L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~ 792 (949)
|..+. +. ..+... ......+.+|+.+.+...-. .. -...+..+.+|+.+.+..+...- .
T Consensus 210 L~~i~----~~--~~~~~i----~~~~~~~~~l~~i~ip~~~~-~i---------~~~~f~~~~~l~~~~~~~~~~~i-~ 268 (394)
T 4fs7_A 210 LENME----FP--NSLYYL----GDFALSKTGVKNIIIPDSFT-EL---------GKSVFYGCTDLESISIQNNKLRI-G 268 (394)
T ss_dssp CCBCC----CC--TTCCEE----CTTTTTTCCCCEEEECTTCC-EE---------CSSTTTTCSSCCEEEECCTTCEE-C
T ss_pred cceee----cC--CCceEe----ehhhcccCCCceEEECCCce-ec---------ccccccccccceeEEcCCCccee-e
Confidence 22111 00 000000 01122345566665532211 00 01234556667777665543221 2
Q ss_pred CchhhcccCCcEEEEeccCCCCCCCCCCCCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceeeeccccccccccccc
Q 043039 793 PNWILSLNKLRMLCLSFCKKCEIMPPLGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEWEFIE 872 (949)
Q Consensus 793 p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~ 872 (949)
...+..+..++.+.+....+. -..+..+.+|+.+.+.+ .++.++...+. .+.+|+.+.+-+ +++.+. .
T Consensus 269 ~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~--~i~~I~~~aF~----~c~~L~~i~lp~--~v~~I~--~ 336 (394)
T 4fs7_A 269 GSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLD--SVKFIGEEAFE----SCTSLVSIDLPY--LVEEIG--K 336 (394)
T ss_dssp SCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECT--TCCEECTTTTT----TCTTCCEECCCT--TCCEEC--T
T ss_pred ccccccccccceeccCceeec--ccccccccccccccccc--ccceechhhhc----CCCCCCEEEeCC--cccEEh--H
Confidence 334445666666666543211 11255667777777743 24444332211 345566655532 122221 1
Q ss_pred cccccccccceeccccCccCcCCCC-CCCCCCCcceEEEcc
Q 043039 873 ENITIMPQLNSLAIRDCSKLKMLPD-QVLRSTTLKKLEIND 912 (949)
Q Consensus 873 ~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~ 912 (949)
..+..+.+|+.+.+..+ ++.++. .+..|++|+.+++..
T Consensus 337 ~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 337 RSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred HhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence 23556777888877543 555543 456777888888754
No 178
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.25 E-value=1.2e-05 Score=89.33 Aligned_cols=179 Identities=16% Similarity=0.172 Sum_probs=103.0
Q ss_pred CccccchhHH---HHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHH
Q 043039 174 SEVCGRNEEK---NALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWK 250 (949)
Q Consensus 174 ~~~~Gr~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 250 (949)
.+++|.+..+ ..+...+... ..+.+.|+|++|+||||+|+.+.+. ....| ..+++.. ..... ++
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f---~~l~a~~-~~~~~-ir 92 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY--ANADV---ERISAVT-SGVKE-IR 92 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH--TTCEE---EEEETTT-CCHHH-HH
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH--hCCCe---EEEEecc-CCHHH-HH
Confidence 4589998888 6777777543 3467899999999999999999885 22222 1222211 11211 11
Q ss_pred HHHHhcCCCCCCCcchHHHHHHHH-hhhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEE-Eccchh--hHh-h
Q 043039 251 AIIENLDGYTPDLGELNTLHQLIN-NRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILV-TTRKET--VAR-M 325 (949)
Q Consensus 251 ~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~--v~~-~ 325 (949)
. ...... ....+++.+|++|+++.......+.+...+..+ ...+|. ||.+.. +.. .
T Consensus 93 ~-----------------~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 93 E-----------------AIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSAL 153 (447)
T ss_dssp H-----------------HHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHH
T ss_pred H-----------------HHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHH
Confidence 1 111111 112467889999999776544555555555542 233443 444432 111 1
Q ss_pred hcCcceEeCCCCChHhHHHHHHHHhhccCCC---CCchhHHHHHHHHHHhcCCCchHHHHHH
Q 043039 326 IGSTCVISIEELSEPECWSLFKRFAFLNRSR---SDCKQLEEIGRKITWKCKGLPLAVKTIG 384 (949)
Q Consensus 326 ~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~g~Plal~~~~ 384 (949)
.....++.+.+++.++...++.+.+...... ....-..+..+.|++.++|.+-.+..+-
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 2334588999999999999998886531111 1122234566778888998886554433
No 179
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.20 E-value=1.1e-05 Score=88.50 Aligned_cols=198 Identities=15% Similarity=0.116 Sum_probs=105.8
Q ss_pred CccccchhHHHHH---HHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEe----CCCCCHH
Q 043039 174 SEVCGRNEEKNAL---KGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCV----SDPFDVF 246 (949)
Q Consensus 174 ~~~~Gr~~~~~~l---~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~----~~~~~~~ 246 (949)
..++|++..++.+ .+.+.... ...+.+.|+|++|+|||++|+.+.+.......| +.+.. +......
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~---~~~~~~~~~~~~~~~~ 116 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF---TAIAGSEIFSLEMSKT 116 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE---EEEEGGGGSCSSSCHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc---ccccchhhhhcccchh
Confidence 4699999887664 44444322 123578999999999999999998853211121 22221 1223333
Q ss_pred HHHHHHHHhcCC---------------------CC-------CC--CcchHHHHHHHHhhh-----CCc----eEEEEEe
Q 043039 247 RVWKAIIENLDG---------------------YT-------PD--LGELNTLHQLINNRI-----GGK----KVLLVLD 287 (949)
Q Consensus 247 ~~~~~i~~~l~~---------------------~~-------~~--~~~~~~~~~~l~~~l-----~~~----~~LlVlD 287 (949)
+.+.+....... .. .. ..-...+...+.... .++ +.+|++|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ID 196 (368)
T 3uk6_A 117 EALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFID 196 (368)
T ss_dssp HHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEh
Confidence 333333332110 00 00 000112222221111 133 3599999
Q ss_pred CCCCCCcccHHHHHHhhhccCCCcEEEEEccc-------------hhhHh-hhcCcceEeCCCCChHhHHHHHHHHhhcc
Q 043039 288 DVWTEDGNKWESFQRCLINAHRGSKILVTTRK-------------ETVAR-MIGSTCVISIEELSEPECWSLFKRFAFLN 353 (949)
Q Consensus 288 dv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-------------~~v~~-~~~~~~~~~l~~l~~~~~~~l~~~~~~~~ 353 (949)
++........+.+...+...... .++++|.. ..+.. .......+.+.+++.++..+++..++...
T Consensus 197 Ei~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 197 EVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp SGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred hccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHc
Confidence 99776655566666666443333 34444431 11111 11223458999999999999999887543
Q ss_pred CCCCCchhHHHHHHHHHHhcC-CCchHHHHH
Q 043039 354 RSRSDCKQLEEIGRKITWKCK-GLPLAVKTI 383 (949)
Q Consensus 354 ~~~~~~~~~~~~~~~i~~~~~-g~Plal~~~ 383 (949)
... -..+....|++.+. |.|-.+..+
T Consensus 276 ~~~----~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 276 DVE----MSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp TCC----BCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CCC----CCHHHHHHHHHHhcCCCHHHHHHH
Confidence 321 12445667777887 777655443
No 180
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.17 E-value=2.6e-05 Score=83.68 Aligned_cols=173 Identities=10% Similarity=0.048 Sum_probs=105.0
Q ss_pred hhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccc--------------------cccceEEEEEe
Q 043039 180 NEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVS--------------------NNFNVMIWVCV 239 (949)
Q Consensus 180 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--------------------~~f~~~~wv~~ 239 (949)
++..+.+...+.... -.+.+.++|+.|+|||++|+.+.+...-. .|++ ..++..
T Consensus 8 ~~~~~~l~~~i~~~~-----~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-----GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTTC-----CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcCC-----cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 455677777775432 34578999999999999998887641100 0122 223322
Q ss_pred C---CCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEE
Q 043039 240 S---DPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVT 316 (949)
Q Consensus 240 ~---~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT 316 (949)
. ....+.. .+++.+.+... -..+++-++|+|+++.......+.+...+.....++.+|++
T Consensus 82 ~~~~~~~~i~~-ir~l~~~~~~~----------------~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~ 144 (334)
T 1a5t_A 82 EKGKNTLGVDA-VREVTEKLNEH----------------ARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLA 144 (334)
T ss_dssp CTTCSSBCHHH-HHHHHHHTTSC----------------CTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEE
T ss_pred cccCCCCCHHH-HHHHHHHHhhc----------------cccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 1 1111111 11222221110 01256779999999776656667777777665667777777
Q ss_pred ccchh-hHhhh-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHH
Q 043039 317 TRKET-VARMI-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIG 384 (949)
Q Consensus 317 tr~~~-v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 384 (949)
|.+.. +...+ .....+++.+++.++..+++.+.. . .+ .+.+..+++.++|.|..+..+.
T Consensus 145 t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~--~~----~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 145 TREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV---T--MS----QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp ESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---C--CC----HHHHHHHHHHTTTCHHHHHHTT
T ss_pred eCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---C--CC----HHHHHHHHHHcCCCHHHHHHHh
Confidence 76643 33322 234689999999999999998775 1 11 3445678889999997665443
No 181
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.15 E-value=3.4e-05 Score=85.26 Aligned_cols=318 Identities=12% Similarity=0.075 Sum_probs=174.9
Q ss_pred ccCCceEEEEEeccCCCC-cccccCCCCceEEEecCCCCCCcch-hhccCCceeEEEeCCcccccccccc-ccccCCCCC
Q 043039 539 CYEKLRHSILVLHYNASF-PVSIFNAKKLRSLLIQGYSLQHMPS-FFDQLTCLRALRIGKYGDDAIERIP-NGIEKLIHL 615 (949)
Q Consensus 539 ~~~~~r~l~l~~~~~~~l-~~~~~~~~~Lr~L~l~~~~l~~l~~-~~~~l~~Lr~L~L~~~~~~~~~~lp-~~i~~l~~L 615 (949)
.+.+++.+.+-.+ ...+ ..+|.+|.+|+.+.+..+ ++.++. .|.++..|+.+.+..+ +..+. ..+.++..+
T Consensus 69 ~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~----l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 69 GCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM----LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT----CCEECTTTTTTCCCS
T ss_pred CCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc----eeeecceeeeccccc
Confidence 3456676666432 3333 356788999999999754 666643 5788888888777544 33332 234444433
Q ss_pred CeeeecccCCccc-chhhcCCCCCcEEeecCCCCCCccc-cccccCCCCCeeeCCCcccccCC-cCCCCCCCCcccCccc
Q 043039 616 RYLKLFFVGIEEL-PETFCELFNLQNLDLRRCSKFKRLP-QNIGKLVNLRHLIFDEDDLDYMP-KGMGSLTGLRTLSEFV 692 (949)
Q Consensus 616 ~~L~L~~~~i~~l-p~~l~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~~p-~~i~~l~~L~~L~~~~ 692 (949)
...... .+..+ ...+.++.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+ ++.++ ..+.++..|+.+....
T Consensus 143 ~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 143 EITIPE--GVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp EEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred ccccCc--cccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence 332222 22233 245778888999888753 34444 34667888888876553 44444 3466777777765332
Q ss_pred eecCCCccCCCccCcccccccccCCCceEEccCCCCCChhhhhhhcccCCCCCCeEEEEecCCCCcchhhhcHHHHhhcC
Q 043039 693 AVSGGGKYGSKACNLDGLRHMNHLRGSLKIRGLGNVTDVDAAKNAELEKKKNLISLELEFDKEEEEDEDEVNHQAIIEAL 772 (949)
Q Consensus 693 ~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 772 (949)
+... ..........++ .+.+.. .+.. .....+..+..|+.+.+..+...- ....+
T Consensus 218 ~~~~---i~~~~~~~~~l~-------~i~ip~--~~~~---i~~~~f~~~~~l~~~~~~~~~~~i----------~~~~F 272 (394)
T 4fs7_A 218 SLYY---LGDFALSKTGVK-------NIIIPD--SFTE---LGKSVFYGCTDLESISIQNNKLRI----------GGSLF 272 (394)
T ss_dssp TCCE---ECTTTTTTCCCC-------EEEECT--TCCE---ECSSTTTTCSSCCEEEECCTTCEE----------CSCTT
T ss_pred CceE---eehhhcccCCCc-------eEEECC--Ccee---cccccccccccceeEEcCCCccee----------ecccc
Confidence 1110 000011111111 222211 1111 111245677888888886543221 12345
Q ss_pred CCCCCcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCCC-CCCCCCCCCcceeeecCCCCcEEeCCcccCCCCCCC
Q 043039 773 RPHPNLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEI-MPPLGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAF 851 (949)
Q Consensus 773 ~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~-~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f 851 (949)
..+..++.+.+....+. ...+..+.+|+.+.+.++ .... -..+..+.+|+.+.|.. .++.++...+. .+
T Consensus 273 ~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~----~c 342 (394)
T 4fs7_A 273 YNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFR----GC 342 (394)
T ss_dssp TTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTT----TC
T ss_pred ccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCC--cccEEhHHhcc----CC
Confidence 66777877776554321 234557888999988765 2222 22377889999998843 25555443221 34
Q ss_pred CccceeeeccccccccccccccccccccccceeccccCccCcCCCCCCCCCCCcceE
Q 043039 852 PRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKMLPDQVLRSTTLKKL 908 (949)
Q Consensus 852 ~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L 908 (949)
.+|+.+.+-. +++.+. ...+..+++|+.+.|..+ ++.+...+.++++|+.+
T Consensus 343 ~~L~~i~lp~--~l~~I~--~~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 343 TSLSNINFPL--SLRKIG--ANAFQGCINLKKVELPKR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTCCEECCCT--TCCEEC--TTTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEEE
T ss_pred CCCCEEEECc--cccEeh--HHHhhCCCCCCEEEECCC--CEEhhheecCCCCCcEE
Confidence 5666666632 222222 234667889999988653 44444456666777654
No 182
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.15 E-value=2.7e-05 Score=82.91 Aligned_cols=160 Identities=14% Similarity=0.127 Sum_probs=91.6
Q ss_pred ccccchhHHHHHHHHHccCC---------CCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccc--eEEEEEeCCCC
Q 043039 175 EVCGRNEEKNALKGKLLSET---------AEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFN--VMIWVCVSDPF 243 (949)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~---------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~ 243 (949)
.++|.+..++.+.+++.... .........+.|+|++|+|||++|+.+.+.....+... ..+.++.+.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~-- 109 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD-- 109 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH--
Confidence 47898888888877654210 00122345689999999999999998876522211111 223332211
Q ss_pred CHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCC---------CcccHHHHHHhhhccCCCcEEE
Q 043039 244 DVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTE---------DGNKWESFQRCLINAHRGSKIL 314 (949)
Q Consensus 244 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ii 314 (949)
+...... .........+... +.-+|++|+++.. .......+...+.....+..||
T Consensus 110 ------------l~~~~~g-~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i 173 (309)
T 3syl_A 110 ------------LVGQYIG-HTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVI 173 (309)
T ss_dssp ------------TCCSSTT-CHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEE
T ss_pred ------------hhhhccc-ccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEE
Confidence 1111111 1111222223222 2349999999632 3334456666666666677888
Q ss_pred EEccchhhHhh--hc------CcceEeCCCCChHhHHHHHHHHhhc
Q 043039 315 VTTRKETVARM--IG------STCVISIEELSEPECWSLFKRFAFL 352 (949)
Q Consensus 315 vTtr~~~v~~~--~~------~~~~~~l~~l~~~~~~~l~~~~~~~ 352 (949)
.||........ .. ....+.+.+++.++..+++..++..
T Consensus 174 ~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 174 LAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 88865332111 01 1268899999999999999888754
No 183
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.12 E-value=2.7e-05 Score=83.99 Aligned_cols=176 Identities=13% Similarity=0.153 Sum_probs=106.9
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccc-eEEEEEeCCCCCHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFN-VMIWVCVSDPFDVFRVWKAI 252 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 252 (949)
..++|.+..++.+..++.... .+.+.++|++|+||||+|+.+.+... ...+. .+..++.+.....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~------~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~------- 90 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK------LPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGI------- 90 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSH-------
T ss_pred HHhcCcHHHHHHHHHHHhcCC------CceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccH-------
Confidence 357899999999988886432 22388999999999999999887521 11111 1222233222121
Q ss_pred HHhcCCCCCCCcchHHHHHHHHhh------hCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccchh-hHhh
Q 043039 253 IENLDGYTPDLGELNTLHQLINNR------IGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKET-VARM 325 (949)
Q Consensus 253 ~~~l~~~~~~~~~~~~~~~~l~~~------l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~ 325 (949)
+.+.+.+... +.+.+-++|+|+++.......+.+...+......+++|++|.... +...
T Consensus 91 --------------~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~ 156 (340)
T 1sxj_C 91 --------------DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPA 156 (340)
T ss_dssp --------------HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred --------------HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchh
Confidence 1111111111 123467899999976655566677777766556677777776532 2111
Q ss_pred h-cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHH
Q 043039 326 I-GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVK 381 (949)
Q Consensus 326 ~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 381 (949)
+ .....+.+.+++.++..+.+...+......-. .+..+.|++.++|.+--+.
T Consensus 157 i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~----~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 157 LLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLS----PNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBC----HHHHHHHHHHHTTCHHHHH
T ss_pred HHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 1 22347889999999998888876632221111 3456778888899886443
No 184
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.12 E-value=1.9e-06 Score=93.16 Aligned_cols=67 Identities=16% Similarity=0.202 Sum_probs=41.1
Q ss_pred CCCCCCeEEEEecCCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCC----CCchhhcccCCcEEEEeccCCC
Q 043039 741 KKKNLISLELEFDKEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKAR----FPNWILSLNKLRMLCLSFCKKC 813 (949)
Q Consensus 741 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~----~p~~~~~l~~L~~L~L~~~~~~ 813 (949)
.+++|+.|.+.+|.+.+. ....+.. ...+++|+.|+|+.|.+... ++..+..+++|+.|+|++|.+.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~-----~~~~la~-a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNV-----VVEMFLE-SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESCTTHHH-----HHHHHHH-CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCCCCchH-----HHHHHHh-CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 467888888887765432 1111222 23467888888887766542 2333446677888888777543
No 185
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.12 E-value=3.9e-05 Score=82.17 Aligned_cols=170 Identities=19% Similarity=0.141 Sum_probs=94.6
Q ss_pred HHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCC
Q 043039 182 EKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTP 261 (949)
Q Consensus 182 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 261 (949)
....+..+..... .....+.|+|++|+||||||+.+++..... -..++++++. .+...+...+...
T Consensus 22 a~~~~~~~~~~~~----~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~------~~~~~~~~~~~~~-- 87 (324)
T 1l8q_A 22 AYEVVKEALENLG----SLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSAD------DFAQAMVEHLKKG-- 87 (324)
T ss_dssp HHHHHHHHHHTTT----TSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHH------HHHHHHHHHHHHT--
T ss_pred HHHHHHHHHhCcC----CCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHH------HHHHHHHHHHHcC--
Confidence 3445555554321 134568899999999999999998852211 1234555543 2333333333211
Q ss_pred CCcchHHHHHHHHhhhCCceEEEEEeCCCCCCc--ccHHHHHHhhhc-cCCCcEEEEEccchh---------hHhhhcCc
Q 043039 262 DLGELNTLHQLINNRIGGKKVLLVLDDVWTEDG--NKWESFQRCLIN-AHRGSKILVTTRKET---------VARMIGST 329 (949)
Q Consensus 262 ~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~ 329 (949)
...... ..+. +.-+|++||+..... .....+...+.. ...|..||+||.... +...+...
T Consensus 88 ---~~~~~~----~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~ 159 (324)
T 1l8q_A 88 ---TINEFR----NMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGG 159 (324)
T ss_dssp ---CHHHHH----HHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTS
T ss_pred ---cHHHHH----HHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCc
Confidence 111111 1122 256999999965432 223334444322 234567888886421 22223333
Q ss_pred ceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchH
Q 043039 330 CVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLA 379 (949)
Q Consensus 330 ~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 379 (949)
..+++.+ +.++..+++...+...+..-. .+....|++.+ |..-.
T Consensus 160 ~~i~l~~-~~~e~~~il~~~~~~~~~~l~----~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 160 ILVEIEL-DNKTRFKIIKEKLKEFNLELR----KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp EEEECCC-CHHHHHHHHHHHHHHTTCCCC----HHHHHHHHHHC-SSHHH
T ss_pred eEEEeCC-CHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHhC-CCHHH
Confidence 5789999 999999999988754332222 34556777778 76643
No 186
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.10 E-value=7.9e-07 Score=97.03 Aligned_cols=124 Identities=12% Similarity=0.154 Sum_probs=61.4
Q ss_pred CCceEEEecCCCCCC--cchhhccCCceeEEEeCCcccccccc-----ccccc-cCCCCCCeeeecccCCcc-----cch
Q 043039 564 KKLRSLLIQGYSLQH--MPSFFDQLTCLRALRIGKYGDDAIER-----IPNGI-EKLIHLRYLKLFFVGIEE-----LPE 630 (949)
Q Consensus 564 ~~Lr~L~l~~~~l~~--l~~~~~~l~~Lr~L~L~~~~~~~~~~-----lp~~i-~~l~~L~~L~L~~~~i~~-----lp~ 630 (949)
++|+.|++++|.+.. +...+..+++|+.|+|++|. +.. +...+ ...++|++|+|++|.+.. ++.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~---l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 177 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS---LGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLME 177 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC---CCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC---CCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHH
Confidence 456666666665542 22222334456666666665 221 11112 234556666666666542 344
Q ss_pred hhcCCCCCcEEeecCCCCCC-----ccccccccCCCCCeeeCCCccccc-----CCcCCCCCCCCcccCcc
Q 043039 631 TFCELFNLQNLDLRRCSKFK-----RLPQNIGKLVNLRHLIFDEDDLDY-----MPKGMGSLTGLRTLSEF 691 (949)
Q Consensus 631 ~l~~L~~L~~L~L~~~~~l~-----~lp~~i~~L~~L~~L~l~~~~l~~-----~p~~i~~l~~L~~L~~~ 691 (949)
.+..+++|++|+|++|. +. .++..+...++|++|++++|.++. ++..+...++|++|++.
T Consensus 178 ~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls 247 (372)
T 3un9_A 178 GLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLY 247 (372)
T ss_dssp HHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECT
T ss_pred HHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEecc
Confidence 44555666666666655 32 233444555566666666665542 22233344555555533
No 187
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.05 E-value=8.3e-06 Score=75.65 Aligned_cols=113 Identities=19% Similarity=0.164 Sum_probs=70.5
Q ss_pred ccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCccc-ccccceEEEEEeCCCCCHHHHHHHHH
Q 043039 175 EVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADV-SNNFNVMIWVCVSDPFDVFRVWKAII 253 (949)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~ 253 (949)
.++|++..+.++.+.+..... ...-|.|+|.+|+|||++|+.+++.... ...| + ++++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~---v-~~~~~~~~~-------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEF---V-YRELTPDNA-------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCC---E-EEECCTTTS--------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCE---E-EECCCCCcc--------
Confidence 578999999999988754321 1124689999999999999999885321 2222 3 555542221
Q ss_pred HhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccc
Q 043039 254 ENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRK 319 (949)
Q Consensus 254 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 319 (949)
.... ..+... +.-.|+||+++.........+...+.......+||.||..
T Consensus 66 ----------~~~~---~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ----------PQLN---DFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ----------SCHH---HHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ----------hhhh---cHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 1111 111111 1237899999877666666677777555556778888775
No 188
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.04 E-value=5.1e-07 Score=85.18 Aligned_cols=39 Identities=18% Similarity=0.288 Sum_probs=24.9
Q ss_pred cccceeccccCccCcC--CCCCCCCCCCcceEEEccCCChhH
Q 043039 879 PQLNSLAIRDCSKLKM--LPDQVLRSTTLKKLEINDCPILEK 918 (949)
Q Consensus 879 ~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~c~~l~~ 918 (949)
++|+.|+|++|++++. +. .+.++++|+.|+|++|+.++.
T Consensus 114 ~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 114 KSMLEMEIISCGNVTDKGII-ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHCCEEEEESCTTCCHHHHH-HGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCEEEcCCCCcCCHHHHH-HHhcCCCCCEEECCCCCCCCc
Confidence 4677777777776662 21 134567777777777777654
No 189
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.03 E-value=6.9e-06 Score=80.05 Aligned_cols=45 Identities=24% Similarity=0.225 Sum_probs=37.7
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..++||+.+++.+.+.+... ..+.+.|+|++|+|||++|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999652 2345689999999999999998775
No 190
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.02 E-value=5.8e-05 Score=78.51 Aligned_cols=171 Identities=15% Similarity=0.233 Sum_probs=89.8
Q ss_pred ccccchhHHHHHHH-------HHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 043039 175 EVCGRNEEKNALKG-------KLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFR 247 (949)
Q Consensus 175 ~~~Gr~~~~~~l~~-------~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 247 (949)
.++|....++++.. .+.... ....+.+.|+|++|+|||++|+.+++. ....| +.+..+.
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~~---~~i~~~~------ 99 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEE--SNFPF---IKICSPD------ 99 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHH--HTCSE---EEEECGG------
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEeCHH------
Confidence 46777776666665 232111 235678899999999999999999885 22222 2222221
Q ss_pred HHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCC------C---ccc-HHHHHHhhhc---cCCCcEEE
Q 043039 248 VWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTE------D---GNK-WESFQRCLIN---AHRGSKIL 314 (949)
Q Consensus 248 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------~---~~~-~~~l~~~l~~---~~~gs~ii 314 (949)
.+.+. ........+...+......++.+|+||+++.. . ... ...+...+.. ......||
T Consensus 100 -------~~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii 171 (272)
T 1d2n_A 100 -------KMIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLII 171 (272)
T ss_dssp -------GCTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEE
T ss_pred -------HhcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEE
Confidence 11110 00001122233333444567889999998431 1 111 1223332221 12233466
Q ss_pred EEccchhhHhhh---cC-cceEeCCCCCh-HhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCC
Q 043039 315 VTTRKETVARMI---GS-TCVISIEELSE-PECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGL 376 (949)
Q Consensus 315 vTtr~~~v~~~~---~~-~~~~~l~~l~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 376 (949)
.||......... .. ...+.+.+++. ++...++.+.. . .. .+....|++.+.|.
T Consensus 172 ~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~-~~----~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 172 GTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----N-FK----DKERTTIAQQVKGK 229 (272)
T ss_dssp EEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C-SC----HHHHHHHHHHHTTS
T ss_pred EecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----C-CC----HHHHHHHHHHhcCC
Confidence 677766443321 11 45688888988 66666665532 1 11 33456677777773
No 191
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.95 E-value=1.5e-05 Score=77.24 Aligned_cols=121 Identities=16% Similarity=0.156 Sum_probs=66.3
Q ss_pred chhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCC
Q 043039 179 RNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDG 258 (949)
Q Consensus 179 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 258 (949)
++..++.+.+++..-.. .....+.|+|++|+||||||+.+++.......+ .+++++ ..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcC
Confidence 45556666666643321 124578999999999999999998753211121 233333 33444444433322
Q ss_pred CCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHH--HHHHhhhcc-CCCcEEEEEccc
Q 043039 259 YTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWE--SFQRCLINA-HRGSKILVTTRK 319 (949)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtr~ 319 (949)
.... .....+. +.-+|||||++....+.|. .+...+... ..|..||+||..
T Consensus 89 ~~~~-----~~~~~~~-----~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 89 GKDT-----KFLKTVL-----NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp TCCS-----HHHHHHH-----TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred chHH-----HHHHHhc-----CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 1111 2222222 3558999999743323343 343434332 256789998875
No 192
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.95 E-value=0.00041 Score=73.76 Aligned_cols=189 Identities=19% Similarity=0.144 Sum_probs=101.6
Q ss_pred CccccchhHHHHHHHHHccC----C--CCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSE----T--AEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFR 247 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 247 (949)
.+++|.+..++.|.+.+... . .+.....+-+.++|++|+|||+||+.+++... .. ..+.++.+.-.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~---~~~~i~~~~l~---- 83 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NS---TFFSISSSDLV---- 83 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SC---EEEEEECCSSC----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CC---cEEEEEhHHHH----
Confidence 46899999888888766321 0 00112346788999999999999999998521 11 22334433211
Q ss_pred HHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCC-------cccH----HHHHHhhhc---cCCCcEE
Q 043039 248 VWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTED-------GNKW----ESFQRCLIN---AHRGSKI 313 (949)
Q Consensus 248 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------~~~~----~~l~~~l~~---~~~gs~i 313 (949)
..... .....+...+...-..++.+|+||+++... .... ..+...+.. ...+..|
T Consensus 84 ----------~~~~g-~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~v 152 (322)
T 1xwi_A 84 ----------SKWLG-ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 152 (322)
T ss_dssp ----------CSSCC-SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEE
T ss_pred ----------hhhhh-HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEE
Confidence 11001 111222222222223578899999996421 0111 122222222 1234445
Q ss_pred EEEccchhhH-hhh--cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCC-chHHHHHHh
Q 043039 314 LVTTRKETVA-RMI--GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGL-PLAVKTIGS 385 (949)
Q Consensus 314 ivTtr~~~v~-~~~--~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~ 385 (949)
|.||...... ..+ .-...+.+...+.++..+++..+......... ......|++.+.|. +-.|..+..
T Consensus 153 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 153 LGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT----EADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC----HHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5566543211 111 22357888889999999999887643221111 34456788888886 444555543
No 193
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.94 E-value=0.00015 Score=77.31 Aligned_cols=186 Identities=19% Similarity=0.148 Sum_probs=102.8
Q ss_pred CccccchhHHHHHHHHHccCC------CCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSET------AEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFR 247 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 247 (949)
.+++|.+..++.|.+.+.... .......+-+.++|++|+|||+||+.+++. .... .+.++.+.
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~v~~~~------ 86 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSSD------ 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCE---EEEEEHHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCC---EEEEchHH------
Confidence 468999999999988773110 001123456899999999999999999885 2222 23333221
Q ss_pred HHHHHHHhcCCCCCCCcchHHHH-HHHHhhhCCceEEEEEeCCCCCCc-----------ccHHHHHHhhhc---cCCCcE
Q 043039 248 VWKAIIENLDGYTPDLGELNTLH-QLINNRIGGKKVLLVLDDVWTEDG-----------NKWESFQRCLIN---AHRGSK 312 (949)
Q Consensus 248 ~~~~i~~~l~~~~~~~~~~~~~~-~~l~~~l~~~~~LlVlDdv~~~~~-----------~~~~~l~~~l~~---~~~gs~ 312 (949)
+.... ..+.+... ..+...-..++.+|+||+++.... .....+...+.. ...+..
T Consensus 87 ----l~~~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 156 (322)
T 3eie_A 87 ----LVSKW------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 156 (322)
T ss_dssp ----HHTTT------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEE
T ss_pred ----Hhhcc------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceE
Confidence 11110 01112222 222222235678999999964211 012333333322 234555
Q ss_pred EEEEccchhhHh-hh--cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCC-CchHHHHHH
Q 043039 313 ILVTTRKETVAR-MI--GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKG-LPLAVKTIG 384 (949)
Q Consensus 313 iivTtr~~~v~~-~~--~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~ 384 (949)
||.||....... .+ .-...+.+...+.++..++|..++........ ......|++.+.| .+-.|..+.
T Consensus 157 vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 157 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT----KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC----HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 665766532211 11 12356788889999999999988753322112 2345667778877 454555444
No 194
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.93 E-value=0.00014 Score=78.74 Aligned_cols=187 Identities=12% Similarity=0.067 Sum_probs=101.6
Q ss_pred CccccchhHHHHHHHHHccC----CC--CCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSE----TA--EQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFR 247 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 247 (949)
..++|.+..++.|.+.+... .. ......+.+.|+|++|+|||++|+.+++.. .. ..+.++++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~--~~---~~~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS--GA---TFFSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT--TC---EEEEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc--CC---eEEEEehHHhhc---
Confidence 46899999999998877431 00 001234578899999999999999998752 11 234445432111
Q ss_pred HHHHHHHhcCCCCCCCcchHHHHH-HHHhhhCCceEEEEEeCCCCCCc-----------ccHHHHHHhhhcc----CCCc
Q 043039 248 VWKAIIENLDGYTPDLGELNTLHQ-LINNRIGGKKVLLVLDDVWTEDG-----------NKWESFQRCLINA----HRGS 311 (949)
Q Consensus 248 ~~~~i~~~l~~~~~~~~~~~~~~~-~l~~~l~~~~~LlVlDdv~~~~~-----------~~~~~l~~~l~~~----~~gs 311 (949)
.. ......... .+...-..++.+|+||+++.... .....+...+... ..+.
T Consensus 156 -----------~~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 156 -----------KW--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp -----------SS--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred -----------cc--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCE
Confidence 00 011111112 22222235678999999942100 1122333333221 2334
Q ss_pred EEEEEccchh-hHhhh--cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCC-CchHHHHHHh
Q 043039 312 KILVTTRKET-VARMI--GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKG-LPLAVKTIGS 385 (949)
Q Consensus 312 ~iivTtr~~~-v~~~~--~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~~ 385 (949)
.||.||.... +...+ .-...+.+...+.++..+++...+........ .+....|++.+.| .+-.+..+..
T Consensus 223 ~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS----EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5555665432 21111 11346788889999999998887643221111 3456677788887 5555655543
No 195
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.93 E-value=0.00053 Score=72.22 Aligned_cols=186 Identities=16% Similarity=0.128 Sum_probs=100.1
Q ss_pred CccccchhHHHHHHHHHccCCC------CCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETA------EQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFR 247 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 247 (949)
..++|.+..++.+.+.+..... +-....+.+.|+|++|+||||+|+.+.+.. .. ..+.++.+.-.
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~--~~---~~~~i~~~~l~---- 91 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC--SA---TFLNISAASLT---- 91 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT--TC---EEEEEESTTTS----
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh--CC---CeEEeeHHHHh----
Confidence 4699999999999887743110 001123578899999999999999998752 21 23344443311
Q ss_pred HHHHHHHhcCCCCCCCcchHHHH-HHHHhhhCCceEEEEEeCCCCCCc-----------ccHHHHHHhhhcc-----CCC
Q 043039 248 VWKAIIENLDGYTPDLGELNTLH-QLINNRIGGKKVLLVLDDVWTEDG-----------NKWESFQRCLINA-----HRG 310 (949)
Q Consensus 248 ~~~~i~~~l~~~~~~~~~~~~~~-~~l~~~l~~~~~LlVlDdv~~~~~-----------~~~~~l~~~l~~~-----~~g 310 (949)
.... .+..... ..+......++.+|++|++..... .....+...+... ..+
T Consensus 92 ----------~~~~--~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 159 (297)
T 3b9p_A 92 ----------SKYV--GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDR 159 (297)
T ss_dssp ----------SSSC--SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------C
T ss_pred ----------hccc--chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCc
Confidence 1000 1112222 222222235678999999954211 0111222222211 123
Q ss_pred cEEEEEccchhh-Hhhh--cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCch-HHHHHH
Q 043039 311 SKILVTTRKETV-ARMI--GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPL-AVKTIG 384 (949)
Q Consensus 311 s~iivTtr~~~v-~~~~--~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~ 384 (949)
..||.||..... .... .-...+.+...+.++...++...+........ .+....|++.+.|.+- ++..+.
T Consensus 160 v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD----TEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp EEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 456666665321 1111 12346777888888888888877643222111 2345677888888775 454443
No 196
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.91 E-value=8.9e-06 Score=79.02 Aligned_cols=114 Identities=11% Similarity=0.054 Sum_probs=81.2
Q ss_pred cccCCCCceEEEecCC-CCCC-----cchhhccCCceeEEEeCCccccc--cccccccccCCCCCCeeeecccCCcc---
Q 043039 559 SIFNAKKLRSLLIQGY-SLQH-----MPSFFDQLTCLRALRIGKYGDDA--IERIPNGIEKLIHLRYLKLFFVGIEE--- 627 (949)
Q Consensus 559 ~~~~~~~Lr~L~l~~~-~l~~-----l~~~~~~l~~Lr~L~L~~~~~~~--~~~lp~~i~~l~~L~~L~L~~~~i~~--- 627 (949)
.+...+.|++|++++| .+.. +...+...+.|++|+|++|.... ...+...+...+.|++|+|++|.|..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4566788999999988 7652 45556777889999998887211 12244556667889999999988773
Q ss_pred --cchhhcCCCCCcEEee--cCCCCCCc-----cccccccCCCCCeeeCCCcccc
Q 043039 628 --LPETFCELFNLQNLDL--RRCSKFKR-----LPQNIGKLVNLRHLIFDEDDLD 673 (949)
Q Consensus 628 --lp~~l~~L~~L~~L~L--~~~~~l~~-----lp~~i~~L~~L~~L~l~~~~l~ 673 (949)
+...+...++|++|+| ++|. +.. +...+...+.|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 5667777788999999 6676 432 4455666788888888877664
No 197
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.88 E-value=0.00017 Score=77.90 Aligned_cols=187 Identities=19% Similarity=0.125 Sum_probs=100.5
Q ss_pred CccccchhHHHHHHHHHccC----C--CCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSE----T--AEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFR 247 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 247 (949)
.+++|.+..++.|.+.+... . .......+-|.|+|++|+|||+||+.+++.. ... .+.++.+ +
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~--~~~---~~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA--NST---FFSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH--TCE---EEEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh--CCC---EEEeeHH------H
Confidence 46899999999998876321 0 0011223457899999999999999999852 222 2233322 1
Q ss_pred HHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcc-----------cHHHHHHhhhc---cCCCcEE
Q 043039 248 VWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGN-----------KWESFQRCLIN---AHRGSKI 313 (949)
Q Consensus 248 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~-----------~~~~l~~~l~~---~~~gs~i 313 (949)
+.....+ .....+...+...-..++.+|+||+++..... ....+...+.. ...+..|
T Consensus 120 ----l~~~~~g-----~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 120 ----LVSKWMG-----ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp ----HHSCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred ----Hhhhhcc-----hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEE
Confidence 1111111 01111222222222357889999999643211 12223333322 1234555
Q ss_pred EEEccchhhH-hhh--cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCC-CchHHHHHH
Q 043039 314 LVTTRKETVA-RMI--GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKG-LPLAVKTIG 384 (949)
Q Consensus 314 ivTtr~~~v~-~~~--~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~ 384 (949)
|.||...... ..+ .-...+.+...+.++..+++..+......... ......|++.+.| .+-.|..+.
T Consensus 191 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~----~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT----KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 5566543211 111 22357788899999999999887743221112 2345667778887 454555544
No 198
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.86 E-value=7.7e-05 Score=78.29 Aligned_cols=148 Identities=13% Similarity=0.043 Sum_probs=94.5
Q ss_pred cchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcc-cc-cccceEEEEEeCC-CCCHHHHHHHHHH
Q 043039 178 GRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDAD-VS-NNFNVMIWVCVSD-PFDVFRVWKAIIE 254 (949)
Q Consensus 178 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~-~~f~~~~wv~~~~-~~~~~~~~~~i~~ 254 (949)
|-++.++.|.+.+... ..+...++|++|+||||+|+.+.+... .. .+.+ +.++..+. ...+.. .+++.+
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~-ir~li~ 72 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDD-IRTIKD 72 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHH-HHHHHH
Confidence 4456677777777542 257889999999999999999876311 11 1223 34444432 222222 223333
Q ss_pred hcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccch-hhHhhhcCcceEe
Q 043039 255 NLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKE-TVARMIGSTCVIS 333 (949)
Q Consensus 255 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~ 333 (949)
.+.... ..+++-++|+|+++.......+.+...+....+.+.+|++|.++ .+...+... .++
T Consensus 73 ~~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~ 135 (305)
T 2gno_A 73 FLNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFR 135 (305)
T ss_dssp HHTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEE
T ss_pred HHhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEe
Confidence 332111 12456799999998776667777888887666778888777553 444445455 999
Q ss_pred CCCCChHhHHHHHHHHh
Q 043039 334 IEELSEPECWSLFKRFA 350 (949)
Q Consensus 334 l~~l~~~~~~~l~~~~~ 350 (949)
+.++++++..+.+.+..
T Consensus 136 f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 136 VVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EECCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998775
No 199
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.84 E-value=4.7e-06 Score=85.07 Aligned_cols=82 Identities=15% Similarity=0.114 Sum_probs=52.1
Q ss_pred ccCCceeEEEeCCccccccccccccccCCCCCCeeeecccCCcccchhhcCCC--CCcEEeecCCCCCCccc-------c
Q 043039 584 DQLTCLRALRIGKYGDDAIERIPNGIEKLIHLRYLKLFFVGIEELPETFCELF--NLQNLDLRRCSKFKRLP-------Q 654 (949)
Q Consensus 584 ~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~--~L~~L~L~~~~~l~~lp-------~ 654 (949)
.++++|+.|+|++|....+..+|..+..+++|++|+|++|.|+.+ ..+..+. +|++|+|++|.....+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 457777888887777433334455566777788888887777765 2344444 77777777777444444 1
Q ss_pred ccccCCCCCeee
Q 043039 655 NIGKLVNLRHLI 666 (949)
Q Consensus 655 ~i~~L~~L~~L~ 666 (949)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 245666666665
No 200
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.81 E-value=2.3e-05 Score=77.44 Aligned_cols=119 Identities=18% Similarity=0.187 Sum_probs=63.4
Q ss_pred hHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCC
Q 043039 181 EEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYT 260 (949)
Q Consensus 181 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 260 (949)
..++.+.+++..... ....+.+.|+|++|+|||+||+.+++... .....++|+++. .+...+......
T Consensus 36 ~~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~~~--~~~~~~~~~~~~------~~~~~~~~~~~~-- 103 (202)
T 2w58_A 36 KAIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANELA--KRNVSSLIVYVP------ELFRELKHSLQD-- 103 (202)
T ss_dssp HHHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEEEHH------HHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEhH------HHHHHHHHHhcc--
Confidence 355566666654321 11225788999999999999999988632 223446666543 344444433221
Q ss_pred CCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHH--HHH-hhhcc-CCCcEEEEEccc
Q 043039 261 PDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWES--FQR-CLINA-HRGSKILVTTRK 319 (949)
Q Consensus 261 ~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~iivTtr~ 319 (949)
.........+.+ .-+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 104 ---~~~~~~~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 ---QTMNEKLDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ---CCCHHHHHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred ---chHHHHHHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 112233333332 2399999996643333221 222 22221 245578888874
No 201
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.79 E-value=2.3e-05 Score=72.40 Aligned_cols=110 Identities=10% Similarity=0.103 Sum_probs=64.8
Q ss_pred ccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHH
Q 043039 175 EVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIE 254 (949)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 254 (949)
.++|++..++++.+.+..... .. .-|.|+|.+|+|||++|+.+++... ..+.++++. ... .
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~---~~-~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~---~~~---~--- 65 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK---RT-SPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVE---YLI---D--- 65 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT---CS-SCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTT---HHH---H---
T ss_pred CceeCCHHHHHHHHHHHHHhC---CC-CcEEEECCCCccHHHHHHHHHHhCC------CeEEechhh---CCh---H---
Confidence 578999999988888754221 11 2477999999999999999988522 222222221 110 0
Q ss_pred hcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhcc-CCCcEEEEEccc
Q 043039 255 NLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINA-HRGSKILVTTRK 319 (949)
Q Consensus 255 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtr~ 319 (949)
. ....+ +... .-.|+||++..........+...+... ..+.+||.||..
T Consensus 66 -~------------~~~~~-~~a~--~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 66 -M------------PMELL-QKAE--GGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp -C------------HHHHH-HHTT--TSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred -h------------hhhHH-HhCC--CCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 0 01111 1111 237899999877655566666666544 345678888764
No 202
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.78 E-value=0.00062 Score=75.01 Aligned_cols=106 Identities=16% Similarity=0.188 Sum_probs=59.4
Q ss_pred cccCCC-CceEEEecCCCCCCcch-hhccCCceeEEEeCCccccccccccc-cccCCCCCCeeeecccCCcccc-hhhcC
Q 043039 559 SIFNAK-KLRSLLIQGYSLQHMPS-FFDQLTCLRALRIGKYGDDAIERIPN-GIEKLIHLRYLKLFFVGIEELP-ETFCE 634 (949)
Q Consensus 559 ~~~~~~-~Lr~L~l~~~~l~~l~~-~~~~l~~Lr~L~L~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp-~~l~~ 634 (949)
+|.+++ .|+++.+..+ ++.+.. .|.+|.+|+.+.+..+....+..+.. .+.++.+|+.+.+..+ +..++ ..+..
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence 455564 4777777543 555533 57777778877776553222444433 4666677776665433 44443 34556
Q ss_pred CCCCcEEeecCCCCCCccc-cccccCCCCCeeeCC
Q 043039 635 LFNLQNLDLRRCSKFKRLP-QNIGKLVNLRHLIFD 668 (949)
Q Consensus 635 L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~ 668 (949)
+.+|+.+.+... +..++ ..+..+.+|+.+.+.
T Consensus 136 c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 136 CEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp CTTCCEEECCTT--CCEECTTTTTTCTTCCEEECC
T ss_pred hcccccccccce--eeeecccceeccccccccccc
Confidence 677777777542 33333 234556666666543
No 203
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.78 E-value=2.4e-06 Score=80.56 Aligned_cols=91 Identities=15% Similarity=0.065 Sum_probs=39.5
Q ss_pred CCcEEEEeccCCCC-CCCCCCCCCCcceeeecCCCCcEEeCCcccCCCCCCCCccceeeecccccccccccccccccccc
Q 043039 801 KLRMLCLSFCKKCE-IMPPLGKLQSLEVLDIWEMHGIKRVGDEVLGIEIIAFPRLKKFTLWSLDGWEEWEFIEENITIMP 879 (949)
Q Consensus 801 ~L~~L~L~~~~~~~-~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~ 879 (949)
+|+.|++++|.+.+ .+..+..+++|++|+|++|..+++.+-..........++|++|++++|+++++.... .+..++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~--~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII--ALHHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH--HGGGCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH--HHhcCC
Confidence 34444444444322 122234455555555555544433222111100001234555555555555443332 233456
Q ss_pred ccceeccccCccCc
Q 043039 880 QLNSLAIRDCSKLK 893 (949)
Q Consensus 880 ~L~~L~l~~c~~l~ 893 (949)
+|+.|+|++|+.++
T Consensus 140 ~L~~L~L~~c~~It 153 (176)
T 3e4g_A 140 NLKYLFLSDLPGVK 153 (176)
T ss_dssp TCCEEEEESCTTCC
T ss_pred CCCEEECCCCCCCC
Confidence 66666666665554
No 204
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.76 E-value=0.0016 Score=69.60 Aligned_cols=177 Identities=17% Similarity=0.225 Sum_probs=95.3
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAII 253 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 253 (949)
..++|.+..++.+...+..... .......+.++|++|+||||||+.+.+.. ...|. ..+..-...
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l--~~~~~---~~sg~~~~~--------- 89 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASEL--QTNIH---VTSGPVLVK--------- 89 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHHH--TCCEE---EEETTTCCS---------
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHHh--CCCEE---EEechHhcC---------
Confidence 4588988888887776643210 01233578999999999999999998852 11211 111111011
Q ss_pred HhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccC------------------CCcEEE-
Q 043039 254 ENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAH------------------RGSKIL- 314 (949)
Q Consensus 254 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~ii- 314 (949)
...+...+ ..+. ++-++++|++........+.+...+.... +...++
T Consensus 90 ------------~~~l~~~~-~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 90 ------------QGDMAAIL-TSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp ------------HHHHHHHH-HHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred ------------HHHHHHHH-HHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 11111111 1122 33477888885543223333332222111 011222
Q ss_pred EEccchhhHhhhcC--cceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHH
Q 043039 315 VTTRKETVARMIGS--TCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTI 383 (949)
Q Consensus 315 vTtr~~~v~~~~~~--~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 383 (949)
.|++...+...+.. ...+.+++.+.++-.+++.+.+...... ...+.+..|++++.|.|-.+..+
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~----~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVE----IEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCC----BCHHHHHHHHHTSTTCHHHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCC----cCHHHHHHHHHhcCCChHHHHHH
Confidence 24443333222211 2357899999999999999876432221 22456788999999999755433
No 205
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.76 E-value=0.00048 Score=72.57 Aligned_cols=180 Identities=14% Similarity=0.100 Sum_probs=98.5
Q ss_pred CccccchhHHHHHHHHHccCCC-------CCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETA-------EQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVF 246 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 246 (949)
.+++|.+..+++|.+++...-. .+-...+.+.|+|++|+|||+||+.+++.. ... .+.++ ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~--~~~---~i~v~------~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--QAN---FISIK------GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT--TCE---EEEEC------HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh--CCC---EEEEE------hH
Confidence 4589999988888887653100 001234578999999999999999999852 222 22222 12
Q ss_pred HHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCC--------------cccHHHHHHhhhc--cCCC
Q 043039 247 RVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTED--------------GNKWESFQRCLIN--AHRG 310 (949)
Q Consensus 247 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--------------~~~~~~l~~~l~~--~~~g 310 (949)
.+. ....+.. ... +...+.......+.+|++|++.... ......+...+.. ...+
T Consensus 84 ~l~----~~~~g~~--~~~---~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 84 ELL----TMWFGES--EAN---VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp HHH----HHHHTTC--TTH---HHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred HHH----hhhcCch--HHH---HHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 222 2221111 111 2223333334568999999995310 0112344444432 2235
Q ss_pred cEEEEEccchhhH-hhh-c---CcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCch
Q 043039 311 SKILVTTRKETVA-RMI-G---STCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPL 378 (949)
Q Consensus 311 s~iivTtr~~~v~-~~~-~---~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 378 (949)
..||.||...... ..+ . -...+.+...+.++-.+++..+...... .....+ ..+++.+.|.|=
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~~----~~la~~~~g~sg 222 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVDL----EFLAKMTNGFSG 222 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCCH----HHHHHTCSSCCH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-CccchH----HHHHHHcCCCCH
Confidence 5677777654322 111 1 2357889999999999998877643221 112223 345556777664
No 206
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.74 E-value=0.00058 Score=74.96 Aligned_cols=188 Identities=12% Similarity=0.088 Sum_probs=99.0
Q ss_pred cCccccchhHHHHHHHHHccCCC------CCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHH
Q 043039 173 VSEVCGRNEEKNALKGKLLSETA------EQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVF 246 (949)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 246 (949)
-.+++|.+..++.+.+++..... ......+-+.|+|++|+|||++|+.+.+. ... .++.++++.-...
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~---~~~~v~~~~l~~~- 187 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNA---TFFNISAASLTSK- 187 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTC---EEEEECSCCC----
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcC---cEEEeeHHHhhcc-
Confidence 35699999999999988732110 00112357899999999999999999875 211 2333443321110
Q ss_pred HHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCC-----------cccHHHHHHhhhcc----CCCc
Q 043039 247 RVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTED-----------GNKWESFQRCLINA----HRGS 311 (949)
Q Consensus 247 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----------~~~~~~l~~~l~~~----~~gs 311 (949)
. .. .....+...+...-...+.+|+||+++... ......+...+... ....
T Consensus 188 ---------~----~g-~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 253 (389)
T 3vfd_A 188 ---------Y----VG-EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRV 253 (389)
T ss_dssp ------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CE
T ss_pred ---------c----cc-hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCE
Confidence 0 00 011112222222223456799999995320 01111222222211 2234
Q ss_pred EEEEEccchh-hHhhh-cC-cceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCch-HHHHHH
Q 043039 312 KILVTTRKET-VARMI-GS-TCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPL-AVKTIG 384 (949)
Q Consensus 312 ~iivTtr~~~-v~~~~-~~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~ 384 (949)
.||.||.... +...+ .. ...+.+...+.++..+++...+........ .+....|++.+.|..- ++..+.
T Consensus 254 ~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 254 LVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT----QKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 4555665432 21111 11 246888899999999999887743222111 3345677888877543 554443
No 207
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.73 E-value=5.4e-05 Score=92.14 Aligned_cols=155 Identities=18% Similarity=0.227 Sum_probs=81.3
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccc---cc--cceEEEEEeCCCCCHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVS---NN--FNVMIWVCVSDPFDVFRV 248 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~--f~~~~wv~~~~~~~~~~~ 248 (949)
..++||++++.++...|.... .+-+.++|++|+||||+|+.+.+..... .. -..+++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----
Confidence 458999999999999996532 2346899999999999999988752110 00 12244444322100
Q ss_pred HHHHHHhcCCCCCCCcchHH-HHHHHHhhhC-CceEEEEEeCCCCCC--------cccHHHHHHhhhccCCCcEEEEEcc
Q 043039 249 WKAIIENLDGYTPDLGELNT-LHQLINNRIG-GKKVLLVLDDVWTED--------GNKWESFQRCLINAHRGSKILVTTR 318 (949)
Q Consensus 249 ~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~-~~~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTtr 318 (949)
+ .....+... +...+...-. +++.+|++|++.... ....+.+...+.. .+..+|.+|.
T Consensus 240 ---------g-~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~ 307 (854)
T 1qvr_A 240 ---------G-AKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATT 307 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEEC
T ss_pred ---------c-CccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecC
Confidence 0 000112222 2222222222 468999999996532 1111223333322 2344665555
Q ss_pred chhhH-----hhh-cCcceEeCCCCChHhHHHHHHHHh
Q 043039 319 KETVA-----RMI-GSTCVISIEELSEPECWSLFKRFA 350 (949)
Q Consensus 319 ~~~v~-----~~~-~~~~~~~l~~l~~~~~~~l~~~~~ 350 (949)
..... ..+ .....+.+.+++.++..+++....
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 43321 111 113468999999999999887543
No 208
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.72 E-value=0.0007 Score=75.44 Aligned_cols=188 Identities=19% Similarity=0.157 Sum_probs=99.5
Q ss_pred CccccchhHHHHHHHHHccC----CC--CCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSE----TA--EQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFR 247 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 247 (949)
.+++|.+..++.|.+.+... .. +.....+.+.++|++|+|||+||+.+++... .. ..+.++.+.-
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~-~~---~~~~v~~~~l----- 204 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NS---TFFSISSSDL----- 204 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC-SS---EEEEECCC-------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC-CC---CEEEEeHHHH-----
Confidence 56899999999998876321 00 0012346788999999999999999998520 11 1222322211
Q ss_pred HHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCC-------cccHHHHHHhh----hc---cCCCcEE
Q 043039 248 VWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTED-------GNKWESFQRCL----IN---AHRGSKI 313 (949)
Q Consensus 248 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------~~~~~~l~~~l----~~---~~~gs~i 313 (949)
.....+.. ......+.... -..++.+|+||+++... ......+...+ .. ...+..|
T Consensus 205 -----~~~~~g~~--~~~~~~~f~~a---~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~v 274 (444)
T 2zan_A 205 -----VSKWLGES--EKLVKNLFQLA---RENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 274 (444)
T ss_dssp ------------C--CCTHHHHHHHH---HHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEE
T ss_pred -----HhhhcchH--HHHHHHHHHHH---HHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEE
Confidence 11111111 11222222222 23567899999996531 11122222222 11 1345566
Q ss_pred EEEccchhhH-hhh--cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCC-CchHHHHHH
Q 043039 314 LVTTRKETVA-RMI--GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKG-LPLAVKTIG 384 (949)
Q Consensus 314 ivTtr~~~v~-~~~--~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~ 384 (949)
|.||...... ..+ .-...+.+...+.++...+|..++........ ......|++.+.| .+-.|..+.
T Consensus 275 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 275 LGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT----EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 6677654221 111 11346788888888889999887643221111 2345667778887 444555444
No 209
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.69 E-value=0.0002 Score=76.21 Aligned_cols=136 Identities=16% Similarity=0.242 Sum_probs=76.1
Q ss_pred ccccchhHHHHHHHHHccCCC---CCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHH
Q 043039 175 EVCGRNEEKNALKGKLLSETA---EQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKA 251 (949)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 251 (949)
.++|.+..++.+...+..... ........+.++|++|+|||++|+.+.+.. ...-...+.++++....... ...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~--~~~~~~~~~~~~~~~~~~~~-~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL--FDTEEAMIRIDMTEYMEKHA-VSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH--HSCGGGEEEEEGGGCCSTTH-HHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH--cCCCcceEEeeccccccccc-HHH
Confidence 478999998888888764321 011234689999999999999999998752 11122345556554332211 111
Q ss_pred HHHhcCCCCC--CCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccC-----------CCcEEEEEcc
Q 043039 252 IIENLDGYTP--DLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAH-----------RGSKILVTTR 318 (949)
Q Consensus 252 i~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 318 (949)
+ ++.... .......+...+.. ...-+++||++..........+...+.... ..+.||.||.
T Consensus 95 l---~g~~~~~~~~~~~~~~~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn 168 (311)
T 4fcw_A 95 L---IGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSN 168 (311)
T ss_dssp H---HCCCTTSTTTTTCCHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEES
T ss_pred h---cCCCCccccccccchHHHHHHh---CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecc
Confidence 1 121110 11111223333322 234699999997766666666766664432 2334777776
Q ss_pred c
Q 043039 319 K 319 (949)
Q Consensus 319 ~ 319 (949)
.
T Consensus 169 ~ 169 (311)
T 4fcw_A 169 L 169 (311)
T ss_dssp T
T ss_pred c
Confidence 5
No 210
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.60 E-value=0.00023 Score=73.56 Aligned_cols=132 Identities=12% Similarity=0.054 Sum_probs=69.0
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAII 253 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 253 (949)
..++|++..+.++.+.+..... ....+.|+|.+|+|||++|+.+++.... .-...+.++++.-. . ..+..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~~~~--~~~~~~~v~~~~~~-~-~~~~~-- 75 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYLSSR--WQGPFISLNCAALN-E-NLLDS-- 75 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHTSTT--TTSCEEEEEGGGSC-H-HHHHH--
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhcCc--cCCCeEEEecCCCC-h-hHHHH--
Confidence 3488999998888877654321 1235779999999999999999875221 11234556655432 1 11111
Q ss_pred HhcCCCCCCC-cc-hHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhcc-----------CCCcEEEEEccc
Q 043039 254 ENLDGYTPDL-GE-LNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINA-----------HRGSKILVTTRK 319 (949)
Q Consensus 254 ~~l~~~~~~~-~~-~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr~ 319 (949)
.+.+..... .. .......+.. ...-+|+||++..........+...+... ..+.+||.||..
T Consensus 76 -~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 76 -ELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp -HHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred -HhcCCcccccccccccccchhhh---cCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 111110000 00 0000001111 12348999999776655555566655432 234678888875
No 211
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.57 E-value=2.1e-05 Score=76.30 Aligned_cols=113 Identities=10% Similarity=0.086 Sum_probs=84.7
Q ss_pred cchhhccCCceeEEEeCCc-ccc--ccccccccccCCCCCCeeeecccCCc-----ccchhhcCCCCCcEEeecCCCCCC
Q 043039 579 MPSFFDQLTCLRALRIGKY-GDD--AIERIPNGIEKLIHLRYLKLFFVGIE-----ELPETFCELFNLQNLDLRRCSKFK 650 (949)
Q Consensus 579 l~~~~~~l~~Lr~L~L~~~-~~~--~~~~lp~~i~~l~~L~~L~L~~~~i~-----~lp~~l~~L~~L~~L~L~~~~~l~ 650 (949)
+...+...+.|+.|+|++| ... ....+...+...++|++|+|++|.|. .+...+...++|++|+|++|. +.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~ 106 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-IS 106 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CC
Confidence 4445778899999999998 521 12335566778899999999999987 355667777899999999998 44
Q ss_pred c-----cccccccCCCCCeeeC--CCccccc-----CCcCCCCCCCCcccCccc
Q 043039 651 R-----LPQNIGKLVNLRHLIF--DEDDLDY-----MPKGMGSLTGLRTLSEFV 692 (949)
Q Consensus 651 ~-----lp~~i~~L~~L~~L~l--~~~~l~~-----~p~~i~~l~~L~~L~~~~ 692 (949)
. +...+...+.|++|++ ++|.+.. +...+...++|+.|++..
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence 2 5667788889999999 8888863 334456667788887543
No 212
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.56 E-value=7.3e-05 Score=69.30 Aligned_cols=86 Identities=16% Similarity=0.090 Sum_probs=51.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCce
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKK 281 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 281 (949)
..++|+|+.|+|||||++.+++.....+ ..++++...+-... ..+ .+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g--~~~~~~~~~~~~~~-----------------------------~~~-~~~ 84 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAG--KNAAYIDAASMPLT-----------------------------DAA-FEA 84 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTT--CCEEEEETTTSCCC-----------------------------GGG-GGC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcC--CcEEEEcHHHhhHH-----------------------------HHH-hCC
Confidence 4789999999999999999987532211 12566665432111 111 235
Q ss_pred EEEEEeCCCCCCcccHHHHHHhhhcc-CCCc-EEEEEccc
Q 043039 282 VLLVLDDVWTEDGNKWESFQRCLINA-HRGS-KILVTTRK 319 (949)
Q Consensus 282 ~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~iivTtr~ 319 (949)
-++|+||+........+.+...+... ..|. +||+||+.
T Consensus 85 ~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 85 EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp SEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 58899999765433333344443321 2233 48888874
No 213
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.51 E-value=0.00051 Score=75.68 Aligned_cols=138 Identities=12% Similarity=0.121 Sum_probs=84.7
Q ss_pred ceEEEEEeccCCCC-cccccCCCCceEEEecCCC---CCCcch-hhccCCceeEEEeCCccccccccccc-cccCCCCCC
Q 043039 543 LRHSILVLHYNASF-PVSIFNAKKLRSLLIQGYS---LQHMPS-FFDQLTCLRALRIGKYGDDAIERIPN-GIEKLIHLR 616 (949)
Q Consensus 543 ~r~l~l~~~~~~~l-~~~~~~~~~Lr~L~l~~~~---l~~l~~-~~~~l~~Lr~L~L~~~~~~~~~~lp~-~i~~l~~L~ 616 (949)
++.+.+-.. ...+ ..+|.+|.+|+.+.+..+. ++.+.. .|..|..|+.+.+..+ +..++. .+..+.+|+
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~----~~~I~~~aF~~c~~L~ 140 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS----VTEIDSEAFHHCEELD 140 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT----CSEECTTTTTTCTTCC
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc----cceehhhhhhhhcccc
Confidence 556655432 2222 4578899999999998764 555543 5888888888777544 445543 477889999
Q ss_pred eeeecccCCcccc-hhhcCCCCCcEEeecCCCCCCccccccccCCCCCeeeCCCcccccCCcCCCCCCCCccc
Q 043039 617 YLKLFFVGIEELP-ETFCELFNLQNLDLRRCSKFKRLPQNIGKLVNLRHLIFDEDDLDYMPKGMGSLTGLRTL 688 (949)
Q Consensus 617 ~L~L~~~~i~~lp-~~l~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~p~~i~~l~~L~~L 688 (949)
.+.+..+ +..++ ..+..+.+|+.+.+..+ +..+........+|+.+.+..+-..--...+..+.+|...
T Consensus 141 ~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~ 210 (394)
T 4gt6_A 141 TVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTI 210 (394)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEE
T ss_pred cccccce-eeeecccceecccccccccccce--eeEeccccccccceeEEEECCcccccccchhhhcccccee
Confidence 9998643 44443 45677888999888753 5555544334456777764432111112234445555444
No 214
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.0017 Score=69.58 Aligned_cols=178 Identities=17% Similarity=0.147 Sum_probs=97.2
Q ss_pred CccccchhHHHHHHHHHccCCC-------CCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETA-------EQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVF 246 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 246 (949)
.++.|-++.+++|.+.+..+-. -+-...+-|.++|++|+|||.||+++++. .... .+.++.+.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~---f~~v~~s~----- 217 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCK---FIRVSGAE----- 217 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCE---EEEEEGGG-----
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCC---ceEEEhHH-----
Confidence 4688999888888776542100 01123456889999999999999999986 2222 23444332
Q ss_pred HHHHHHHHhcCCCCCCCcchHH-HHHHHHhhhCCceEEEEEeCCCCCC--------cc--c----HHHHHHhhhc--cCC
Q 043039 247 RVWKAIIENLDGYTPDLGELNT-LHQLINNRIGGKKVLLVLDDVWTED--------GN--K----WESFQRCLIN--AHR 309 (949)
Q Consensus 247 ~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~~~LlVlDdv~~~~--------~~--~----~~~l~~~l~~--~~~ 309 (949)
+.... ..+.+. +...+...-...+++|++|+++... .. . ...+...+.. ...
T Consensus 218 ---------l~sk~--vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 286 (405)
T 4b4t_J 218 ---------LVQKY--IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286 (405)
T ss_dssp ---------GSCSS--TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC
T ss_pred ---------hhccc--cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC
Confidence 11111 111122 2222223334678999999996421 00 1 1122222222 233
Q ss_pred CcEEEEEccchhhHh-hh----cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCc
Q 043039 310 GSKILVTTRKETVAR-MI----GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLP 377 (949)
Q Consensus 310 gs~iivTtr~~~v~~-~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 377 (949)
+..||.||....... .+ .-+..+.+..-+.++-.++|..+.-.... ....++ ..|++.+.|.-
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dvdl----~~lA~~t~G~S 354 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGINL----RKVAEKMNGCS 354 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSCCH----HHHHHHCCSCC
T ss_pred CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccCCH----HHHHHHCCCCC
Confidence 445666776543321 11 22568999998999999999877633221 222233 44566676643
No 215
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.49 E-value=0.00059 Score=76.59 Aligned_cols=147 Identities=16% Similarity=0.162 Sum_probs=78.8
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccc---ccc--ceEEEEEeCCCCCHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVS---NNF--NVMIWVCVSDPFDVFRV 248 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~f--~~~~wv~~~~~~~~~~~ 248 (949)
..++||+.+++++...|.... ..-+.++|++|+|||++|+.+....... ... ..++.++++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--------
Confidence 359999999999999996532 2245799999999999999987742100 000 112222222
Q ss_pred HHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccchhhHhh---
Q 043039 249 WKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKETVARM--- 325 (949)
Q Consensus 249 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~--- 325 (949)
....+. -......+...+. ..++.+|++|. .. +..+.+...+.. ...++|.+|........
T Consensus 246 -----~~~~g~--~e~~~~~~~~~~~---~~~~~iLfiD~--~~--~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 246 -----TKYRGE--FEDRLKKVMDEIR---QAGNIILFIDA--AI--DASNILKPSLAR--GELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp --------------CTTHHHHHHHHH---TCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTT
T ss_pred -----ccccch--HHHHHHHHHHHHH---hcCCeEEEEeC--ch--hHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhc
Confidence 000000 0112222333222 35678999992 11 222223322221 23466666655442111
Q ss_pred ----hcCcceEeCCCCChHhHHHHHHHHh
Q 043039 326 ----IGSTCVISIEELSEPECWSLFKRFA 350 (949)
Q Consensus 326 ----~~~~~~~~l~~l~~~~~~~l~~~~~ 350 (949)
.....++.+...+.++..+++....
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 1123479999999999999998765
No 216
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.48 E-value=0.0011 Score=70.11 Aligned_cols=153 Identities=13% Similarity=0.162 Sum_probs=84.0
Q ss_pred CccccchhHHHHHHHHHccCCCC--------CCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCC-
Q 043039 174 SEVCGRNEEKNALKGKLLSETAE--------QPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFD- 244 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~--------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~- 244 (949)
..++|.+..++.+...+...-.. .....+.+.++|++|+|||++|+.+.+.. .. ..+.++++.-.+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l--~~---~~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA--NA---PFIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGSSC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh--CC---CEEEEcchhcccC
Confidence 45899999999998877541000 00123467899999999999999998752 11 234444443211
Q ss_pred ------HHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCccc------------HHHHHHhhhc
Q 043039 245 ------VFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNK------------WESFQRCLIN 306 (949)
Q Consensus 245 ------~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~------------~~~l~~~l~~ 306 (949)
....+.++.....+ .+.. .+.+.+|+||+++...... ...+...+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~-------------~~~~--~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~ 154 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAGG-------------AIDA--VEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 154 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTTT-------------CHHH--HHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHC
T ss_pred CccCccHHHHHHHHHHHhhH-------------HHhh--ccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcC
Confidence 11122222221100 0000 0235699999996543222 4445554443
Q ss_pred c----------CCCcEEEEEcc----ch-----hhHhhhcCcceEeCCCCChHhHHHHHHH
Q 043039 307 A----------HRGSKILVTTR----KE-----TVARMIGSTCVISIEELSEPECWSLFKR 348 (949)
Q Consensus 307 ~----------~~gs~iivTtr----~~-----~v~~~~~~~~~~~l~~l~~~~~~~l~~~ 348 (949)
. ..+..+|.|+. .. .+...+ ...+.+.+++.++..+++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~--~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 155 STVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRL--PIRVELTALSAADFERILTE 213 (310)
T ss_dssp CEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTC--CEEEECCCCCHHHHHHHHHS
T ss_pred CeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhC--CceEEcCCcCHHHHHHHHHh
Confidence 2 12445555542 11 111211 24689999999999888874
No 217
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.47 E-value=0.00085 Score=75.23 Aligned_cols=185 Identities=11% Similarity=0.121 Sum_probs=101.2
Q ss_pred CccccchhHHHHHHHHHccCCCC-------CCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAE-------QPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVF 246 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 246 (949)
..++|.+..++++.+++...... +....+-+.|+|++|+|||++|+.+.+.. ... .+.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~--~~~---fv~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--GAF---FFLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC--SSE---EEEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh--CCC---EEEEEch------
Confidence 45899999999998887532000 01123458899999999999999998752 222 3334422
Q ss_pred HHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCC-------c----ccHHHHHHhhhcc--CCCcEE
Q 043039 247 RVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTED-------G----NKWESFQRCLINA--HRGSKI 313 (949)
Q Consensus 247 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------~----~~~~~l~~~l~~~--~~gs~i 313 (949)
++...+. ..........+.....+++.+|+||+++... . .....+...+... ..+..|
T Consensus 273 ----~l~~~~~-----g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 273 ----EIMSKLA-----GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp ----HHHTSCT-----THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred ----Hhhhhhc-----chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 1111111 1111223334444445678899999993210 0 1123344444332 234455
Q ss_pred EEEccchh-hHhhh----cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCC-chHHHHH
Q 043039 314 LVTTRKET-VARMI----GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGL-PLAVKTI 383 (949)
Q Consensus 314 ivTtr~~~-v~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~ 383 (949)
|.||.... +...+ .-...+.+...+.++-.++|..++..... .....+ .++++.+.|. +-.+..+
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhhH----HHHHHHccCCcHHHHHHH
Confidence 55666542 22111 12347889999999999999888643221 122223 3455566664 4444443
No 218
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.46 E-value=0.00025 Score=74.62 Aligned_cols=159 Identities=12% Similarity=0.106 Sum_probs=85.3
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcc-cccccceEEEEEeCCCCCHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDAD-VSNNFNVMIWVCVSDPFDVFRVWKAI 252 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i 252 (949)
..++|++..+.++.+.+..... ....|.|+|.+|+|||++|+.+.+... .... .+.++++.-.. .++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~---~v~v~~~~~~~--~l~~-- 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHACSARSDRP---LVTLNCAALNE--SLLE-- 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSC---CCEEECSSCCH--HHHH--
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHhCcccCCC---eEEEeCCCCCh--HHHH--
Confidence 3589999999999888765331 123577999999999999999987421 1222 33455543221 2221
Q ss_pred HHhcCCCCCCC-cc-hHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccC-----------CCcEEEEEccc
Q 043039 253 IENLDGYTPDL-GE-LNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAH-----------RGSKILVTTRK 319 (949)
Q Consensus 253 ~~~l~~~~~~~-~~-~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 319 (949)
..+.+..... .. .......+... . .-.|+||++..........+...+.... ...+||.||..
T Consensus 71 -~~lfg~~~g~~tg~~~~~~g~~~~a-~--~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~ 146 (304)
T 1ojl_A 71 -SELFGHEKGAFTGADKRREGRFVEA-D--GGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHR 146 (304)
T ss_dssp -HHHTCCCSSCCC---CCCCCHHHHH-T--TSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESS
T ss_pred -HHhcCccccccCchhhhhcCHHHhc-C--CCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCc
Confidence 1222211100 00 00000111111 1 2368999998876555666666665431 34678888775
Q ss_pred h--h-hH---------hhhcCcceEeCCCCC--hHhHHHHHHH
Q 043039 320 E--T-VA---------RMIGSTCVISIEELS--EPECWSLFKR 348 (949)
Q Consensus 320 ~--~-v~---------~~~~~~~~~~l~~l~--~~~~~~l~~~ 348 (949)
. . +. ..+. ...+.+.+|. .++...++.+
T Consensus 147 ~l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~~ 188 (304)
T 1ojl_A 147 DLAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLADH 188 (304)
T ss_dssp CHHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHHH
T ss_pred cHHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHHH
Confidence 3 1 11 1111 2346788888 4665555543
No 219
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.0024 Score=69.79 Aligned_cols=178 Identities=15% Similarity=0.152 Sum_probs=97.7
Q ss_pred CccccchhHHHHHHHHHccCCC-------CCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETA-------EQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVF 246 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 246 (949)
.++.|-++.+++|.+.+...-. .+-...+-|.++|++|+|||+||+++++.. ... .+.++.+.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~--~~~---~~~v~~s~----- 250 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI--GAN---FIFSPASG----- 250 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH--TCE---EEEEEGGG-----
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh--CCC---EEEEehhh-----
Confidence 4678999888888776532110 012345678899999999999999999862 222 23344332
Q ss_pred HHHHHHHHhcCCCCCCCcchHH-HHHHHHhhhCCceEEEEEeCCCCCC-------c---cc----HHHHHHhhhc--cCC
Q 043039 247 RVWKAIIENLDGYTPDLGELNT-LHQLINNRIGGKKVLLVLDDVWTED-------G---NK----WESFQRCLIN--AHR 309 (949)
Q Consensus 247 ~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~~~LlVlDdv~~~~-------~---~~----~~~l~~~l~~--~~~ 309 (949)
+.... ..+... +.......-...+++|++|+++... . .. ...+...+.. ...
T Consensus 251 ---------l~sk~--~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 251 ---------IVDKY--IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp ---------TCCSS--SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred ---------hcccc--chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 11111 111122 2222222334679999999996410 0 01 1123333322 234
Q ss_pred CcEEEEEccchhhHhh-h---c-CcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCc
Q 043039 310 GSKILVTTRKETVARM-I---G-STCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLP 377 (949)
Q Consensus 310 gs~iivTtr~~~v~~~-~---~-~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 377 (949)
+..||.||........ + + -+..+.+...+.++-.++|..+...... ....++ ..+++.+.|.-
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCCH----HHHHHTCCSCC
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccCH----HHHHHhCCCCC
Confidence 5567777766443321 1 1 2457888888888888888877643221 122233 44566676653
No 220
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.37 E-value=0.0011 Score=74.15 Aligned_cols=95 Identities=14% Similarity=0.059 Sum_probs=58.6
Q ss_pred EEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEc----------c----chhhHh-hhcCcceEeCCCCChHhHHHHHH
Q 043039 283 LLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTT----------R----KETVAR-MIGSTCVISIEELSEPECWSLFK 347 (949)
Q Consensus 283 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt----------r----~~~v~~-~~~~~~~~~l~~l~~~~~~~l~~ 347 (949)
++++|++.......++.+...+...... .+|+.| . ...+.. .......+.+.+++.++..+++.
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHH
Confidence 8999999877666777777777554444 344343 2 111111 11234467999999999999998
Q ss_pred HHhhccCCCCCchhHHHHHHHHHHhc-CCCchHHHH
Q 043039 348 RFAFLNRSRSDCKQLEEIGRKITWKC-KGLPLAVKT 382 (949)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~Plal~~ 382 (949)
..+...+... ..+....|++.+ .|.|.....
T Consensus 377 ~~~~~~~~~~----~~~~~~~i~~~a~~g~~r~a~~ 408 (456)
T 2c9o_A 377 IRAQTEGINI----SEEALNHLGEIGTKTTLRYSVQ 408 (456)
T ss_dssp HHHHHHTCCB----CHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHhCCCC----CHHHHHHHHHHccCCCHHHHHH
Confidence 8764322211 134456677777 777765443
No 221
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.36 E-value=0.001 Score=79.87 Aligned_cols=156 Identities=17% Similarity=0.240 Sum_probs=91.2
Q ss_pred CccccchhHHHHHHHHHccCCCC---CCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAE---QPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWK 250 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 250 (949)
..++|.+..++.+.+.+.....+ .......+.++|++|+|||++|+.+.+.. ...-...+.++++.-.+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l--~~~~~~~i~i~~s~~~~~----- 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI--FGDEESMIRIDMSEYMEK----- 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH--HSCTTCEEEEEGGGGCSS-----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh--cCCCcceEEEechhcccc-----
Confidence 46899999998888887643211 11233478999999999999999998752 122233455565432110
Q ss_pred HHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhcc-----------CCCcEEEEEccc
Q 043039 251 AIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINA-----------HRGSKILVTTRK 319 (949)
Q Consensus 251 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr~ 319 (949)
... ....+...+++ ...-+|+||++..........+...+..+ ....+||+||..
T Consensus 564 ---------~~~--~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 564 ---------HST--SGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ---------CCC--C---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ---------ccc--ccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 000 01111222222 22348999999877666666677666542 135688888873
Q ss_pred -----hh----hHhhh-----cC-cceEeCCCCChHhHHHHHHHHh
Q 043039 320 -----ET----VARMI-----GS-TCVISIEELSEPECWSLFKRFA 350 (949)
Q Consensus 320 -----~~----v~~~~-----~~-~~~~~l~~l~~~~~~~l~~~~~ 350 (949)
.. +...+ .. ...+.+.+++.++..+++....
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 11 11111 11 2478889999988888776654
No 222
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.36 E-value=0.0024 Score=65.44 Aligned_cols=184 Identities=12% Similarity=0.089 Sum_probs=93.5
Q ss_pred CccccchhHHHHHHHHHc---cCCCC---CCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 043039 174 SEVCGRNEEKNALKGKLL---SETAE---QPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFR 247 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~---~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 247 (949)
.+++|.+..++++.+.+. ....- .....+-+.|+|++|+||||+|+.+.+.. ... .+.++.+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~--~~~---~~~i~~~~~~~--- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVP---FFTISGSDFVE--- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH--TCC---EEEECSCSSTT---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc--CCC---EEEEeHHHHHH---
Confidence 468999888777766542 11100 00112347899999999999999998752 222 23333322110
Q ss_pred HHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCC----------cc----cHHHHHHhhhc--cCCCc
Q 043039 248 VWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTED----------GN----KWESFQRCLIN--AHRGS 311 (949)
Q Consensus 248 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~----~~~~l~~~l~~--~~~gs 311 (949)
.. .. .....+...+.......+.++++|+++... .. ....+...+.. ...+.
T Consensus 84 -------~~----~~-~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (257)
T 1lv7_A 84 -------MF----VG-VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 151 (257)
T ss_dssp -------SC----CC-CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCE
T ss_pred -------Hh----hh-hhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCE
Confidence 00 00 112223333444445567899999983210 00 11122222221 23345
Q ss_pred EEEEEccchhhH-hhh-c---CcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCC-CchHHHH
Q 043039 312 KILVTTRKETVA-RMI-G---STCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKG-LPLAVKT 382 (949)
Q Consensus 312 ~iivTtr~~~v~-~~~-~---~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~ 382 (949)
.||.||...... ... . -...+.+...+.++-.+++..+.....- ..... ...++..+.| .+--+..
T Consensus 152 ~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l-~~~~~----~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 152 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPL-APDID----AAIIARGTPGFSGADLAN 223 (257)
T ss_dssp EEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCCHHHHHH
T ss_pred EEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCC-Ccccc----HHHHHHHcCCCCHHHHHH
Confidence 566666654321 111 1 1346788888888888888776532211 11111 2345666777 5544443
No 223
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.35 E-value=0.0018 Score=77.84 Aligned_cols=157 Identities=17% Similarity=0.189 Sum_probs=86.2
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCccc---cc-ccceEEE-EEeCCCCCHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADV---SN-NFNVMIW-VCVSDPFDVFRV 248 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~-~f~~~~w-v~~~~~~~~~~~ 248 (949)
..++||+.+++++.+.|.... ..-+.|+|.+|+|||++|+.+.+.... .. .....+| ++.+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~------~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhccC------CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------
Confidence 458999999999999996532 235689999999999999998764211 00 1122222 111110
Q ss_pred HHHHHHhcCCCCCCCcchHHHHHHHHhhh-CCceEEEEEeCCCCCCc-----ccHHHHHHhhhc--cCCCcEEEEEccch
Q 043039 249 WKAIIENLDGYTPDLGELNTLHQLINNRI-GGKKVLLVLDDVWTEDG-----NKWESFQRCLIN--AHRGSKILVTTRKE 320 (949)
Q Consensus 249 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~-----~~~~~l~~~l~~--~~~gs~iivTtr~~ 320 (949)
+.. .....+.+.....+...+ ..++.+|++|++..... ..-......+.. ...+.++|.+|...
T Consensus 254 -------~~~-~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~ 325 (758)
T 1r6b_X 254 -------LAG-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQ 325 (758)
T ss_dssp --------CC-CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHH
T ss_pred -------hcc-ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCch
Confidence 000 111123333333333333 34578999999965310 011122222222 12345666666654
Q ss_pred hhHhhh-------cCcceEeCCCCChHhHHHHHHHHh
Q 043039 321 TVARMI-------GSTCVISIEELSEPECWSLFKRFA 350 (949)
Q Consensus 321 ~v~~~~-------~~~~~~~l~~l~~~~~~~l~~~~~ 350 (949)
...... .....+.+...+.++..+++....
T Consensus 326 ~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 432111 112368899999999988887654
No 224
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.0029 Score=68.98 Aligned_cols=179 Identities=15% Similarity=0.137 Sum_probs=91.8
Q ss_pred cCccccchhHHHHHHHHHccCCC-------CCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCH
Q 043039 173 VSEVCGRNEEKNALKGKLLSETA-------EQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDV 245 (949)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 245 (949)
-.++.|-++.+++|.+.+...-. -+-...+-+.++|++|+|||+||+++++.. ..+ .+.++.+.-
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~--~~~---~~~v~~~~l--- 242 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST--KAA---FIRVNGSEF--- 242 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH--TCE---EEEEEGGGT---
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh--CCC---eEEEecchh---
Confidence 35688999888888776532110 012234568899999999999999999862 222 333443321
Q ss_pred HHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCC--------C--Cccc----HHHHHHhhhc--cCC
Q 043039 246 FRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWT--------E--DGNK----WESFQRCLIN--AHR 309 (949)
Q Consensus 246 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--------~--~~~~----~~~l~~~l~~--~~~ 309 (949)
...... .....+...+...-...+++|++|+++. . .... ...+...+.. ...
T Consensus 243 -----------~~~~~G-e~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~ 310 (428)
T 4b4t_K 243 -----------VHKYLG-EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST 310 (428)
T ss_dssp -----------CCSSCS-HHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC
T ss_pred -----------hccccc-hhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC
Confidence 111100 1111222222233346789999999942 0 0011 2223333322 234
Q ss_pred CcEEEEEccchhhHh-hh---cC-cceEeCCCC-ChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCC
Q 043039 310 GSKILVTTRKETVAR-MI---GS-TCVISIEEL-SEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGL 376 (949)
Q Consensus 310 gs~iivTtr~~~v~~-~~---~~-~~~~~l~~l-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 376 (949)
+..||.||....... .+ +. +..+.+.++ +.++-..+|..+.-.... ....++ ..+++.+.|.
T Consensus 311 ~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l-~~~~dl----~~lA~~t~G~ 378 (428)
T 4b4t_K 311 NVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSL-APEADL----DSLIIRNDSL 378 (428)
T ss_dssp SEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCB-CTTCCH----HHHHHHTTTC
T ss_pred CEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCC-CcccCH----HHHHHHCCCC
Confidence 555666776543221 11 11 346777656 455556667665532211 122233 3455566664
No 225
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.25 E-value=0.005 Score=68.37 Aligned_cols=179 Identities=14% Similarity=0.114 Sum_probs=96.2
Q ss_pred CccccchhHHHHHHHHHccCCCC------CCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAE------QPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFR 247 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 247 (949)
.+++|.++.++++.+....-... ...-.+-+.|+|++|+|||+||+.+.+.. ... .+.+++++-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~--~~~---f~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA--NVP---FFHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH--TCC---EEEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc--CCC---eeeCCHHHHHHH--
Confidence 46899988777776654321100 00112337899999999999999998852 222 233443321110
Q ss_pred HHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCc----------c----cHHHHHHhhhc--cCCCc
Q 043039 248 VWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDG----------N----KWESFQRCLIN--AHRGS 311 (949)
Q Consensus 248 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----------~----~~~~l~~~l~~--~~~gs 311 (949)
. . ..........+.......+.+|+||+++.... . ....+...+.. ...+.
T Consensus 89 --------~----~-g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 89 --------F----V-GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp --------C----T-THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred --------H----h-cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 0 0 00111222334444456789999999954211 0 12223332321 22355
Q ss_pred EEEEEccchhhHh-hh-c---CcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCc
Q 043039 312 KILVTTRKETVAR-MI-G---STCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLP 377 (949)
Q Consensus 312 ~iivTtr~~~v~~-~~-~---~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 377 (949)
.||.||....... .. . -...+.+...+.++-.+++..++..... ..... ...|++.+.|..
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL-AEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC-cchhh----HHHHHHhcCCCc
Confidence 6677776654332 11 1 1347888888888888888877643211 11112 234677888877
No 226
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.24 E-value=0.00033 Score=71.42 Aligned_cols=80 Identities=19% Similarity=0.142 Sum_probs=62.1
Q ss_pred cCCCCceEEEecCCCCCCcc---hhhccCCceeEEEeCCccccccccccccccCCC--CCCeeeecccCCcc-cc-----
Q 043039 561 FNAKKLRSLLIQGYSLQHMP---SFFDQLTCLRALRIGKYGDDAIERIPNGIEKLI--HLRYLKLFFVGIEE-LP----- 629 (949)
Q Consensus 561 ~~~~~Lr~L~l~~~~l~~l~---~~~~~l~~Lr~L~L~~~~~~~~~~lp~~i~~l~--~L~~L~L~~~~i~~-lp----- 629 (949)
.++++|++|+|++|.+..++ ..+..+++|+.|+|++|. +..+ ..+..+. +|++|+|++|.+.. +|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~---i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE---LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC---CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc---cCCc-hhhhhcccCCcceEEccCCcCccccCcchhH
Confidence 35788999999999988654 567789999999999998 5554 2244444 99999999999873 44
Q ss_pred --hhhcCCCCCcEEeec
Q 043039 630 --ETFCELFNLQNLDLR 644 (949)
Q Consensus 630 --~~l~~L~~L~~L~L~ 644 (949)
..+..+++|+.||=.
T Consensus 243 ~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 243 ISAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHHCTTCCEESSC
T ss_pred HHHHHHHCcccCeECCc
Confidence 246789999999843
No 227
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.0055 Score=66.68 Aligned_cols=178 Identities=16% Similarity=0.119 Sum_probs=96.2
Q ss_pred CccccchhHHHHHHHHHcc----CC---CCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHH
Q 043039 174 SEVCGRNEEKNALKGKLLS----ET---AEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVF 246 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~----~~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 246 (949)
.++.|-++.+++|.+.+.. .. .-+-...+-|.++|++|+|||+||+++++.. ... .+.++.+.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~--~~~---fi~vs~s~----- 278 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT--DAT---FIRVIGSE----- 278 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH--TCE---EEEEEGGG-----
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc--CCC---eEEEEhHH-----
Confidence 4688999888888775432 10 0011245678899999999999999999862 222 33344332
Q ss_pred HHHHHHHHhcCCCCCCCcchHH-HHHHHHhhhCCceEEEEEeCCCCCC-------ccc-------HHHHHHhhhcc--CC
Q 043039 247 RVWKAIIENLDGYTPDLGELNT-LHQLINNRIGGKKVLLVLDDVWTED-------GNK-------WESFQRCLINA--HR 309 (949)
Q Consensus 247 ~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~~~LlVlDdv~~~~-------~~~-------~~~l~~~l~~~--~~ 309 (949)
+.... ..+.+. +...+...-...+++|++|+++... ... ...+...+... ..
T Consensus 279 ---------L~sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 279 ---------LVQKY--VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp ---------GCCCS--SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred ---------hhccc--CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 11111 111122 2222233334678999999996421 000 11122222222 23
Q ss_pred CcEEEEEccchhhHh-hh----cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCc
Q 043039 310 GSKILVTTRKETVAR-MI----GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLP 377 (949)
Q Consensus 310 gs~iivTtr~~~v~~-~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 377 (949)
+..||.||....... .+ .-+..+.+...+.++-.++|..+...... ....++ ..|++.+.|.-
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l-~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV-ERGIRW----ELISRLCPNST 415 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB-CSSCCH----HHHHHHCCSCC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC-CCCCCH----HHHHHHCCCCC
Confidence 445566765533221 11 12568888888999999999877643221 122233 44566677653
No 228
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.15 E-value=0.0025 Score=63.57 Aligned_cols=84 Identities=19% Similarity=0.152 Sum_probs=52.6
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCC------------CCCCCcchHHH
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDG------------YTPDLGELNTL 269 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~------------~~~~~~~~~~~ 269 (949)
.++.|+|.+|+||||||..+.. ..-..++|++....++...+.. +.+..+. ......+....
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRRV 94 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHHH
Confidence 4899999999999999999876 1224688888877556554433 3333221 11112222334
Q ss_pred HHHHHhhhCCceEEEEEeCCCC
Q 043039 270 HQLINNRIGGKKVLLVLDDVWT 291 (949)
Q Consensus 270 ~~~l~~~l~~~~~LlVlDdv~~ 291 (949)
...+...+..+.-+||+|.+-.
T Consensus 95 ~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 95 IGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHhhcCCCEEEEcCcHH
Confidence 4445555544577999999854
No 229
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.0025 Score=69.47 Aligned_cols=177 Identities=15% Similarity=0.111 Sum_probs=94.6
Q ss_pred CccccchhHHHHHHHHHcc----CCC---CCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHH
Q 043039 174 SEVCGRNEEKNALKGKLLS----ETA---EQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVF 246 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 246 (949)
.++.|-++.+++|.+.+.. +.. .+-...+-|.++|++|+|||.||+++++.. ... .+.++.+.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~--~~~---f~~v~~s~----- 250 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT--NAT---FLKLAAPQ----- 250 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH--TCE---EEEEEGGG-----
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh--CCC---EEEEehhh-----
Confidence 4688999888888876432 110 012345678899999999999999999852 222 33344332
Q ss_pred HHHHHHHHhcCCCCCCCcchHHHHHHH-HhhhCCceEEEEEeCCCCC-------Ccc---cH----HHHHHhhhc--cCC
Q 043039 247 RVWKAIIENLDGYTPDLGELNTLHQLI-NNRIGGKKVLLVLDDVWTE-------DGN---KW----ESFQRCLIN--AHR 309 (949)
Q Consensus 247 ~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~~~~~LlVlDdv~~~-------~~~---~~----~~l~~~l~~--~~~ 309 (949)
+.... ..+.+...+.+ ...-...+++|++|+++.- ... .. ..+...+.. ...
T Consensus 251 ---------l~~~~--vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~ 319 (434)
T 4b4t_M 251 ---------LVQMY--IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319 (434)
T ss_dssp ---------GCSSC--SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC
T ss_pred ---------hhhcc--cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC
Confidence 11111 11112222222 2222346899999998420 000 11 112222222 223
Q ss_pred CcEEEEEccchhhHhh-h----cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCC
Q 043039 310 GSKILVTTRKETVARM-I----GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGL 376 (949)
Q Consensus 310 gs~iivTtr~~~v~~~-~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 376 (949)
+..||-||........ + .-+..+.+...+.++..++|..+...... ....++ ..|++.+.|.
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDINW----QELARSTDEF 386 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCCH----HHHHHHCSSC
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCCH----HHHHHhCCCC
Confidence 4456667766443321 1 12457888888888888888776543221 122233 4456667664
No 230
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.10 E-value=0.011 Score=64.38 Aligned_cols=59 Identities=12% Similarity=-0.050 Sum_probs=25.1
Q ss_pred CCCCCCcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCCCCCCCCCCCCcceeeec
Q 043039 772 LRPHPNLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEIMPPLGKLQSLEVLDIW 831 (949)
Q Consensus 772 l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~ 831 (949)
+..+.+|+.+.+..+ +...-...+..+.+|+.+.+..+-..-.-..+..+++|+.+.+.
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~ 294 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMD 294 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEEC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhccccccccceecccccccccccccccccc
Confidence 344455555555432 11101223334555665555433111111124555666666553
No 231
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.09 E-value=0.00093 Score=80.29 Aligned_cols=147 Identities=16% Similarity=0.188 Sum_probs=79.5
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcc---ccccc-c-eEEEEEeCCCCCHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDAD---VSNNF-N-VMIWVCVSDPFDVFRV 248 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~~f-~-~~~wv~~~~~~~~~~~ 248 (949)
..++||+.+++++...|.... ..-+.++|++|+|||++|+.+.+... +-... . .++.++..
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g-------- 245 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------- 245 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEeccc--------
Confidence 359999999999999997532 22367999999999999999876420 00000 1 11122220
Q ss_pred HHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccchhhHhh---
Q 043039 249 WKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKETVARM--- 325 (949)
Q Consensus 249 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~--- 325 (949)
....+. -......+ +...-..++.+|++|.. . +..+.+...+. ....++|.||........
T Consensus 246 -----~~~~G~--~e~~l~~~---~~~~~~~~~~iLfiD~~--~--~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~ 309 (758)
T 3pxi_A 246 -----TKYRGE--FEDRLKKV---MDEIRQAGNIILFIDAA--I--DASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (758)
T ss_dssp --------------CTTHHHH---HHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred -----ccccch--HHHHHHHH---HHHHHhcCCEEEEEcCc--h--hHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhc
Confidence 000000 01122222 33333467789999921 1 12222322222 224567777665442111
Q ss_pred ---h-cCcceEeCCCCChHhHHHHHHHHh
Q 043039 326 ---I-GSTCVISIEELSEPECWSLFKRFA 350 (949)
Q Consensus 326 ---~-~~~~~~~l~~l~~~~~~~l~~~~~ 350 (949)
+ .....+.+...+.++..+++....
T Consensus 310 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1 123579999999999999998654
No 232
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.0057 Score=65.85 Aligned_cols=177 Identities=16% Similarity=0.119 Sum_probs=94.6
Q ss_pred CccccchhHHHHHHHHHccC----CC---CCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHH
Q 043039 174 SEVCGRNEEKNALKGKLLSE----TA---EQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVF 246 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~----~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 246 (949)
.++-|-++.+++|.+.+... +. .+-...+-|.++|++|+|||.||+++++.. ... .+.++.+.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~--~~~---fi~v~~s~----- 251 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT--SAT---FLRIVGSE----- 251 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH--TCE---EEEEESGG-----
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh--CCC---EEEEEHHH-----
Confidence 45788988888887765321 00 012234668899999999999999999862 222 23333332
Q ss_pred HHHHHHHHhcCCCCCCCcchHHHHHH-HHhhhCCceEEEEEeCCCCCC----------ccc----HHHHHHhhhc--cCC
Q 043039 247 RVWKAIIENLDGYTPDLGELNTLHQL-INNRIGGKKVLLVLDDVWTED----------GNK----WESFQRCLIN--AHR 309 (949)
Q Consensus 247 ~~~~~i~~~l~~~~~~~~~~~~~~~~-l~~~l~~~~~LlVlDdv~~~~----------~~~----~~~l~~~l~~--~~~ 309 (949)
+.... ..+.+...+. +...-...+++|++|+++... ... ...+...+.. ...
T Consensus 252 ---------l~sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 252 ---------LIQKY--LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp ---------GCCSS--SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred ---------hhhcc--CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 11111 1122222222 222223678999999986310 011 1122222222 223
Q ss_pred CcEEEEEccchhhHhh-h---c-CcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCC
Q 043039 310 GSKILVTTRKETVARM-I---G-STCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGL 376 (949)
Q Consensus 310 gs~iivTtr~~~v~~~-~---~-~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 376 (949)
+..||.||...+.... + + -+..+.+..-+.++..++|..+...... ....++ ..|++.+.|.
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l-~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNL-SEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCB-CSCCCH----HHHHHHCCSC
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCC-CCcCCH----HHHHHhCCCC
Confidence 4456667765443321 1 1 1456888888888888999877633221 222233 3455566664
No 233
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.01 E-value=0.0022 Score=73.32 Aligned_cols=162 Identities=15% Similarity=0.139 Sum_probs=78.7
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAII 253 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 253 (949)
.+++|-+.....+.+.+.-...........+.++|++|+||||||+.+.... ...| ..+.++...+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l--~~~~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL--GRKF---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH--TCEE---EEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc--CCCe---EEEEecccchhhhhhhHHH
Confidence 4578888777777654432110011234589999999999999999998752 2222 2223333222111111111
Q ss_pred HhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcc----cHHHHHHhhhccC---------------CCcEEE
Q 043039 254 ENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGN----KWESFQRCLINAH---------------RGSKIL 314 (949)
Q Consensus 254 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~l~~~~---------------~gs~ii 314 (949)
..++. ......+.+...-.... +++||++...... ....+...+.... ....||
T Consensus 156 ~~ig~------~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 156 TYVGA------MPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp --------------CHHHHHHTTCSSSE-EEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HHhcc------CchHHHHHHHHhhccCC-EEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 11110 01112222333322334 8889999764322 1122333332111 234566
Q ss_pred EEccchh-----hHhhhcCcceEeCCCCChHhHHHHHHHHh
Q 043039 315 VTTRKET-----VARMIGSTCVISIEELSEPECWSLFKRFA 350 (949)
Q Consensus 315 vTtr~~~-----v~~~~~~~~~~~l~~l~~~~~~~l~~~~~ 350 (949)
.||.... +... ...+.+.+++.++-.+++..+.
T Consensus 229 ~ttN~~~~l~~aL~~R---~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 229 ATANNLATIPGPLRDR---MEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EECSSTTTSCHHHHHH---EEEEECCCCCHHHHHHHHHHTH
T ss_pred eccCccccCCHHHHhh---cceeeeCCCCHHHHHHHHHHHH
Confidence 6665532 2222 2478899999988888887654
No 234
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.96 E-value=0.0026 Score=68.06 Aligned_cols=151 Identities=14% Similarity=0.122 Sum_probs=85.4
Q ss_pred ccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHH
Q 043039 175 EVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIE 254 (949)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 254 (949)
.++|+++.++.+...+... +-+.++|++|+|||+||+.+.+. ....| ..+.+.......++..
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~--~~~~~---~~i~~~~~~~~~~l~g---- 90 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKT--MDLDF---HRIQFTPDLLPSDLIG---- 90 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHH--TTCCE---EEEECCTTCCHHHHHE----
T ss_pred ceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHH--hCCCe---EEEecCCCCChhhcCC----
Confidence 5889999999998888643 25789999999999999999874 22222 2334433333322211
Q ss_pred hcCCCCCCCcchHHHHHHHHhhhCC--ceEEEEEeCCCCCCcccHHHHHHhhhcc-----------CCCcEEEEEccchh
Q 043039 255 NLDGYTPDLGELNTLHQLINNRIGG--KKVLLVLDDVWTEDGNKWESFQRCLINA-----------HRGSKILVTTRKET 321 (949)
Q Consensus 255 ~l~~~~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr~~~ 321 (949)
..... ...... ..-.+ ...++++|++..........+...+... .....||.|+....
T Consensus 91 ~~~~~-~~~~~~--------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~ 161 (331)
T 2r44_A 91 TMIYN-QHKGNF--------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVE 161 (331)
T ss_dssp EEEEE-TTTTEE--------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTC
T ss_pred ceeec-CCCCce--------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCc
Confidence 11000 000000 00000 1248999999776555555555555432 23444554554221
Q ss_pred ------hHhhh-cC-cceEeCCCCChHhHHHHHHHHhh
Q 043039 322 ------VARMI-GS-TCVISIEELSEPECWSLFKRFAF 351 (949)
Q Consensus 322 ------v~~~~-~~-~~~~~l~~l~~~~~~~l~~~~~~ 351 (949)
+...+ .. ...+.+...+.++-.+++.+...
T Consensus 162 ~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 162 QEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp CSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred ccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 11111 11 22588999999999999988764
No 235
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.95 E-value=0.0021 Score=77.26 Aligned_cols=133 Identities=17% Similarity=0.225 Sum_probs=74.6
Q ss_pred CccccchhHHHHHHHHHccCCCC---CCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAE---QPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWK 250 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 250 (949)
..++|.+..++.+...+.....+ .......+.++|++|+|||++|+.+.+.. . ...+.++++.......
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l--~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH--T---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh--c---CCEEEEechhhcchhh---
Confidence 45889999998888877532210 11234578999999999999999998752 1 2344555543221100
Q ss_pred HHHHhcCCCCCCCcc---hHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccC-----------CCcEEEEE
Q 043039 251 AIIENLDGYTPDLGE---LNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAH-----------RGSKILVT 316 (949)
Q Consensus 251 ~i~~~l~~~~~~~~~---~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivT 316 (949)
...+.+..+.... ...+...+++ ....+|+||++.....+..+.+...+..+. ....||.|
T Consensus 530 --~~~l~g~~~g~~g~~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~t 604 (758)
T 1r6b_X 530 --VSRLIGAPPGYVGFDQGGLLTDAVIK---HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMT 604 (758)
T ss_dssp --CSSSCCCCSCSHHHHHTTHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEE
T ss_pred --HhhhcCCCCCCcCccccchHHHHHHh---CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEe
Confidence 0111111111110 1112233322 346799999998766666666666665321 23457777
Q ss_pred ccc
Q 043039 317 TRK 319 (949)
Q Consensus 317 tr~ 319 (949)
|..
T Consensus 605 sN~ 607 (758)
T 1r6b_X 605 TNA 607 (758)
T ss_dssp ECS
T ss_pred cCc
Confidence 754
No 236
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.94 E-value=0.018 Score=60.12 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=22.6
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 199 NAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 199 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..++.+.++|++|+|||+||+.+++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567889999999999999999986
No 237
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.89 E-value=0.00073 Score=71.13 Aligned_cols=57 Identities=18% Similarity=0.078 Sum_probs=35.8
Q ss_pred chhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEe
Q 043039 179 RNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCV 239 (949)
Q Consensus 179 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 239 (949)
+...++.+.+++..... .....+.|+|++|+|||+||..+++.... .....++++++
T Consensus 133 ~~~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~ 189 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEH
T ss_pred HHHHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEH
Confidence 34455566667654321 12357889999999999999999885320 12233555554
No 238
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.82 E-value=0.00028 Score=73.16 Aligned_cols=157 Identities=14% Similarity=0.110 Sum_probs=79.4
Q ss_pred CccccchhHHHHHHHHHccCCCC------CCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAE------QPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFR 247 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 247 (949)
.+++|.+..++.+.+.+..-... .....+-+.|+|++|+|||++|+.+++.. ...|- .+..+.-.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~--~~~~~---~v~~~~~~---- 81 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--HVPFF---SMGGSSFI---- 81 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH--TCCCC---CCCSCTTT----
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh--CCCEE---EechHHHH----
Confidence 46899988887777765410000 00112237799999999999999998852 22221 11111100
Q ss_pred HHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcc---------------cHHHHHHhhhcc---CC
Q 043039 248 VWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGN---------------KWESFQRCLINA---HR 309 (949)
Q Consensus 248 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~---------------~~~~l~~~l~~~---~~ 309 (949)
....+.. ......+... ....++.+|+||+++..... ....+...+... ..
T Consensus 82 ------~~~~~~~--~~~~~~~~~~---a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (268)
T 2r62_A 82 ------EMFVGLG--ASRVRDLFET---AKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENA 150 (268)
T ss_dssp ------TSCSSSC--SSSSSTTHHH---HHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCS
T ss_pred ------HhhcchH--HHHHHHHHHH---HHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCC
Confidence 0011111 1111112222 22235679999999542110 112222222211 12
Q ss_pred CcEEEEEccchhhHh-hh-c---CcceEeCCCCChHhHHHHHHHHh
Q 043039 310 GSKILVTTRKETVAR-MI-G---STCVISIEELSEPECWSLFKRFA 350 (949)
Q Consensus 310 gs~iivTtr~~~v~~-~~-~---~~~~~~l~~l~~~~~~~l~~~~~ 350 (949)
...||.||....... .. . ....+.+...+.++..+++..++
T Consensus 151 ~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 151 PVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp CCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 245666666543211 11 1 13467888889999888887765
No 239
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.78 E-value=0.0029 Score=76.89 Aligned_cols=136 Identities=18% Similarity=0.283 Sum_probs=74.0
Q ss_pred CccccchhHHHHHHHHHccCCCC---CCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAE---QPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWK 250 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 250 (949)
..++|.+..++.+...+.....+ .......+.|+|++|+|||++|+.+.+.. ...-...+.++++......
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~--~~~~~~~i~i~~~~~~~~~---- 631 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL--FDTEEAMIRIDMTEYMEKH---- 631 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH--HSSGGGEEEECTTTCCSSG----
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh--cCCCCcEEEEechhccchh----
Confidence 35799999999988887543210 11234678999999999999999998752 1111234445554322210
Q ss_pred HHHHhcCCCCCC---CcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccC-----------CCcEEEEE
Q 043039 251 AIIENLDGYTPD---LGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAH-----------RGSKILVT 316 (949)
Q Consensus 251 ~i~~~l~~~~~~---~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivT 316 (949)
....+.+..+. ......+...+.+ ...-+|+||++........+.+...+..+. .+..||+|
T Consensus 632 -~~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~t 707 (854)
T 1qvr_A 632 -AVSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILT 707 (854)
T ss_dssp -GGGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEE
T ss_pred -HHHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEe
Confidence 00111111000 0011122233332 234599999997766666666766665431 24447777
Q ss_pred ccc
Q 043039 317 TRK 319 (949)
Q Consensus 317 tr~ 319 (949)
|..
T Consensus 708 sn~ 710 (854)
T 1qvr_A 708 SNL 710 (854)
T ss_dssp CCT
T ss_pred cCc
Confidence 764
No 240
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.74 E-value=0.0073 Score=71.15 Aligned_cols=179 Identities=11% Similarity=0.102 Sum_probs=97.2
Q ss_pred CccccchhHHHHHHHHHcc----CCC---CCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHH
Q 043039 174 SEVCGRNEEKNALKGKLLS----ETA---EQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVF 246 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 246 (949)
.++.|-++.+++|.+.+.- ... -+-..++-|.++|++|+|||+||+++++.. ..+ .+.|+.++
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el--g~~---~~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--GAF---FFLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT--TCE---EEEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCe---EEEEEhHH-----
Confidence 4577888887777776432 111 012345678999999999999999999863 222 33444321
Q ss_pred HHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCC-------cccH----HHHHHhhhcc--CCCcEE
Q 043039 247 RVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTED-------GNKW----ESFQRCLINA--HRGSKI 313 (949)
Q Consensus 247 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------~~~~----~~l~~~l~~~--~~gs~i 313 (949)
+... .. ......+...+...-+..+.+|+||+++.-- ...- ..+...+... ..+..|
T Consensus 274 -----l~sk----~~-gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 274 -----IMSK----LA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp -----HHSS----CT-THHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred -----hhcc----cc-hHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 1111 10 1112233344444556789999999995311 0111 1222222221 223445
Q ss_pred EEEccchhhH-hhh----cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCc
Q 043039 314 LVTTRKETVA-RMI----GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLP 377 (949)
Q Consensus 314 ivTtr~~~v~-~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 377 (949)
|-||...... ..+ .-...+++...+.++-.++|..+...... ....++ ..|++++.|.-
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-~~dvdl----~~lA~~T~Gfs 407 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDL----EQVANETHGHV 407 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-CTTCCH----HHHHHHCCSCC
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC-CcccCH----HHHHHhcCCCC
Confidence 5566553322 111 12457889989999999999876532111 222233 34566677654
No 241
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.72 E-value=0.00068 Score=70.06 Aligned_cols=69 Identities=19% Similarity=0.264 Sum_probs=44.6
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEe--CCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCV--SDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIG 278 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 278 (949)
.+++.|+|++|+|||+||.++... ....++|++. ++..+. . ..+.+.....+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-------------~---~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-------------Y---NTDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-------------C---BCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-------------h---hcCHHHHHHHHHHHHh
Confidence 357789999999999999998764 1123556666 322110 0 0344555555555555
Q ss_pred CceEEEEEeCCCC
Q 043039 279 GKKVLLVLDDVWT 291 (949)
Q Consensus 279 ~~~~LlVlDdv~~ 291 (949)
..+ +||+|++..
T Consensus 182 ~~~-LLVIDsI~a 193 (331)
T 2vhj_A 182 QHR-VIVIDSLKN 193 (331)
T ss_dssp HCS-EEEEECCTT
T ss_pred hCC-EEEEecccc
Confidence 555 999999954
No 242
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.56 E-value=0.0022 Score=63.39 Aligned_cols=113 Identities=12% Similarity=-0.004 Sum_probs=63.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCC--CcchHHHHHHHHhhhC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPD--LGELNTLHQLINNRIG 278 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~ 278 (949)
-.++.|+|..|+||||++..+.... ..+-..++.+....... ....+++.++..... ......+.+.+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~--~~~g~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRL--EYADVKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH--HHTTCCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 4689999999999999997776642 22222344444332211 112344444432211 1233455566666555
Q ss_pred CceE-EEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccchh
Q 043039 279 GKKV-LLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKET 321 (949)
Q Consensus 279 ~~~~-LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 321 (949)
+.++ +||+|.+..-+.+..+.+. .+.+ .|..||+|.+..+
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLDKN 127 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCSBC
T ss_pred CCCCCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEecccc
Confidence 4444 9999999654333333333 3333 2778999998543
No 243
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.41 E-value=0.0074 Score=61.13 Aligned_cols=89 Identities=13% Similarity=0.115 Sum_probs=52.4
Q ss_pred EEEEEEecCCChHHHHHHHHHcCccccc----ccceEEEEEeCCCCCHHHHHHHHHHhcCCCCC---------CCcchHH
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSN----NFNVMIWVCVSDPFDVFRVWKAIIENLDGYTP---------DLGELNT 268 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~~ 268 (949)
.++.|+|++|+|||||+..+........ .-..++|++....++...+ .++++.++.... ...+...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNTDH 103 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCHHH
Confidence 4899999999999999998876311111 2357889988775554433 234444432210 0112222
Q ss_pred ---HHHHHHhhhC-CceEEEEEeCCCC
Q 043039 269 ---LHQLINNRIG-GKKVLLVLDDVWT 291 (949)
Q Consensus 269 ---~~~~l~~~l~-~~~~LlVlDdv~~ 291 (949)
....+.+.+. .+.-+||+|++..
T Consensus 104 ~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 104 QTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 2233444443 4677999999853
No 244
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.41 E-value=0.017 Score=62.82 Aligned_cols=50 Identities=26% Similarity=0.260 Sum_probs=34.5
Q ss_pred ccccchhHHHHHHHHHc----cCCC--------------------CCCCCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 175 EVCGRNEEKNALKGKLL----SETA--------------------EQPNAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~----~~~~--------------------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.++|.++.++.+...+. .... ........+.++|++|+|||++|+.+.+.
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHH
Confidence 47888888888877662 0000 00112346889999999999999999875
No 245
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.39 E-value=0.04 Score=59.94 Aligned_cols=129 Identities=15% Similarity=0.116 Sum_probs=74.6
Q ss_pred cCCCCCCcCceEEeccccCCCCCchhhcccCCcEEEEeccCCCCC-CCCCCCCCCcceeeecCCCCcEEeCCcccCCCCC
Q 043039 771 ALRPHPNLESLQISFYEVKARFPNWILSLNKLRMLCLSFCKKCEI-MPPLGKLQSLEVLDIWEMHGIKRVGDEVLGIEII 849 (949)
Q Consensus 771 ~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~-~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 849 (949)
.+..+.+|+.+.+..+- ...-...+..+.+|+.+.+..+ .... -..+..+.+|+.+.+.. .+..++.....
T Consensus 212 ~f~~~~~l~~i~~~~~~-~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~---- 283 (379)
T 4h09_A 212 GFSYGKNLKKITITSGV-TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCS---- 283 (379)
T ss_dssp TTTTCSSCSEEECCTTC-CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC--CCSEECTTTTT----
T ss_pred ccccccccceeeeccce-eEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc--cceeccccccc----
Confidence 34455677777764432 2212334557888999988765 2221 22367788898888843 23444332221
Q ss_pred CCCccceeeeccccccccccccccccccccccceeccccCccCcCCCC-CCCCCCCcceEEEcc
Q 043039 850 AFPRLKKFTLWSLDGWEEWEFIEENITIMPQLNSLAIRDCSKLKMLPD-QVLRSTTLKKLEIND 912 (949)
Q Consensus 850 ~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~ 912 (949)
.+++|+.+.+.+. .++.+. ...+..+.+|+.+.|.. .++.+.. .+.+|++|+.+.+..
T Consensus 284 ~c~~L~~i~l~~~-~i~~I~--~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 284 GCSNLTKVVMDNS-AIETLE--PRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TCTTCCEEEECCT-TCCEEC--TTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccccccc-ccceeh--hhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC
Confidence 4567777776431 122221 23356788899988854 3666654 466778888887743
No 246
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.34 E-value=0.033 Score=56.73 Aligned_cols=156 Identities=17% Similarity=0.169 Sum_probs=77.8
Q ss_pred CccccchhHHHHHHHHHccCCC-------CCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETA-------EQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVF 246 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 246 (949)
.+++|.+..+.++.+....-.. +-..... +.|+|++|+||||||+.+..... ...+.+...
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~------ 83 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS------ 83 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH------
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHH------
Confidence 4588888766666554321100 0011122 89999999999999999987532 123333321
Q ss_pred HHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCC----------CcccH----HHHHHhhhccC-C-C
Q 043039 247 RVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTE----------DGNKW----ESFQRCLINAH-R-G 310 (949)
Q Consensus 247 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------~~~~~----~~l~~~l~~~~-~-g 310 (949)
++...... .....+...+...-...+.++++|++... ....+ ..+...+..+. + .
T Consensus 84 ----~~~~~~~~-----~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~ 154 (254)
T 1ixz_A 84 ----DFVEMFVG-----VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 154 (254)
T ss_dssp ----HHHHSCTT-----HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCC
T ss_pred ----HHHHHHhh-----HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCC
Confidence 11111100 00111222222222345689999999321 00111 12222232222 2 2
Q ss_pred cEEEEEccchhhHhh-h----cCcceEeCCCCChHhHHHHHHHHh
Q 043039 311 SKILVTTRKETVARM-I----GSTCVISIEELSEPECWSLFKRFA 350 (949)
Q Consensus 311 s~iivTtr~~~v~~~-~----~~~~~~~l~~l~~~~~~~l~~~~~ 350 (949)
.-++.||........ . .-...+.+...+.++-.+++..++
T Consensus 155 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 155 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred EEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 234445555444321 1 124578888889888888887765
No 247
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.32 E-value=0.059 Score=57.64 Aligned_cols=157 Identities=10% Similarity=0.002 Sum_probs=99.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHh-hhCC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINN-RIGG 279 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~ 279 (949)
.++..++|..|.||++.++.+..... ...|+....+.+.... +.+.+.+.+.. -+-+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~---------------------~~~~l~~~~~~~plf~ 75 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNT---------------------DWNAIFSLCQAMSLFA 75 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTC---------------------CHHHHHHHHHHHHHCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCC---------------------CHHHHHHHhcCcCCcc
Confidence 45889999999999999988876421 1223221111222222 23333333322 2345
Q ss_pred ceEEEEEeCCCC-CCcccHHHHHHhhhccCCCcEEEEEccc-------hhhHhhhc-CcceEeCCCCChHhHHHHHHHHh
Q 043039 280 KKVLLVLDDVWT-EDGNKWESFQRCLINAHRGSKILVTTRK-------ETVARMIG-STCVISIEELSEPECWSLFKRFA 350 (949)
Q Consensus 280 ~~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtr~-------~~v~~~~~-~~~~~~l~~l~~~~~~~l~~~~~ 350 (949)
++-++|+|+++. .....++.+...+....+++.+|++|.. ..+...+. ....++..+++.++....+.+.+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 567889999976 5556778888888766667777776643 23444433 34688999999999998888876
Q ss_pred hccCCCCCchhHHHHHHHHHHhcCCCchHHHHH
Q 043039 351 FLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTI 383 (949)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 383 (949)
...+.. -..+.+..+++.++|.+.++...
T Consensus 156 ~~~g~~----i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 156 KQLNLE----LDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHTTCE----ECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHcCCC----CCHHHHHHHHHHhchHHHHHHHH
Confidence 443321 22456778889999988777653
No 248
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.32 E-value=0.038 Score=56.79 Aligned_cols=154 Identities=14% Similarity=0.143 Sum_probs=78.8
Q ss_pred ccccchhHHHHHHHHHccCCC--------CCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHH
Q 043039 175 EVCGRNEEKNALKGKLLSETA--------EQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVF 246 (949)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~--------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 246 (949)
++.|-++.+++|.+.+...-. +-..... +.++|++|+||||||+.+...... ..+++...+-.+.
T Consensus 11 di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~- 83 (274)
T 2x8a_A 11 DIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNM- 83 (274)
T ss_dssp -CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSS-
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhh-
Confidence 466666666666654321100 0011122 899999999999999999885221 2344443321110
Q ss_pred HHHHHHHHhcCCCCCCCcchHHHHHHHH-hhhCCceEEEEEeCCCCCCc-----------ccHHHHHHhhhccC--CCcE
Q 043039 247 RVWKAIIENLDGYTPDLGELNTLHQLIN-NRIGGKKVLLVLDDVWTEDG-----------NKWESFQRCLINAH--RGSK 312 (949)
Q Consensus 247 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~~~-----------~~~~~l~~~l~~~~--~gs~ 312 (949)
...+.......+. ..-...+.++++|++..... .....+...+..+. ...-
T Consensus 84 ---------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i 148 (274)
T 2x8a_A 84 ---------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVF 148 (274)
T ss_dssp ---------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEE
T ss_pred ---------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEE
Confidence 0001111111121 11134578999999954210 11122222333221 2334
Q ss_pred EEEEccchhhHhh-h----cCcceEeCCCCChHhHHHHHHHHh
Q 043039 313 ILVTTRKETVARM-I----GSTCVISIEELSEPECWSLFKRFA 350 (949)
Q Consensus 313 iivTtr~~~v~~~-~----~~~~~~~l~~l~~~~~~~l~~~~~ 350 (949)
++.+|....+... . .-+..+.+...+.++-.++|....
T Consensus 149 ~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 149 IMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 5556665544322 1 225578888889999999998765
No 249
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.23 E-value=0.031 Score=62.43 Aligned_cols=176 Identities=14% Similarity=0.129 Sum_probs=90.0
Q ss_pred cCccccchhHHHHHHHHHc---cCCCCC---CCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHH
Q 043039 173 VSEVCGRNEEKNALKGKLL---SETAEQ---PNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVF 246 (949)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~---~~~~~~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 246 (949)
-.+++|.++.+.++.+... ....-. -.-.+-+.|+|++|+||||||+.+..... ...+.++.++-.+
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~-- 102 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVE-- 102 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTS--
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHH--
Confidence 3468999877666665532 211000 00112389999999999999999988532 2234444432110
Q ss_pred HHHHHHHHhcCCCCCCCcchHHHHHHHHhhhC----CceEEEEEeCCCCCC----------cccH----HHHHHhhhcc-
Q 043039 247 RVWKAIIENLDGYTPDLGELNTLHQLINNRIG----GKKVLLVLDDVWTED----------GNKW----ESFQRCLINA- 307 (949)
Q Consensus 247 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~LlVlDdv~~~~----------~~~~----~~l~~~l~~~- 307 (949)
.. .......+...++ ..+.++++|++.... ...+ ..+...+..+
T Consensus 103 ------------~~-----~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 103 ------------MF-----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp ------------SC-----TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred ------------hh-----hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 00 0111122222222 345799999994321 1112 2222223222
Q ss_pred -CCCcEEEEEccchhhHh-hh----cCcceEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCc
Q 043039 308 -HRGSKILVTTRKETVAR-MI----GSTCVISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLP 377 (949)
Q Consensus 308 -~~gs~iivTtr~~~v~~-~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 377 (949)
..+..|+.||....... .. .-...+.+...+.++-.+++..++-.... ..... ...|++.+.|..
T Consensus 166 ~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l-~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 166 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-AEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp SSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCC-CCSST----THHHHTTSCSCC
T ss_pred cCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCC-ChHHH----HHHHHHhcCCCC
Confidence 22344555565554432 11 12357888888998888888776532111 11111 234666777765
No 250
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.18 E-value=0.027 Score=60.30 Aligned_cols=83 Identities=18% Similarity=0.172 Sum_probs=53.6
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCC-----CCcchHHHHHHHHhh
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTP-----DLGELNTLHQLINNR 276 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~ 276 (949)
+++.|.|.+|+||||||.++..... ..-..++|++....++.. .++.++.... +..+.+++.+.+...
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~--~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l 147 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELL 147 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHHH
Confidence 4888999999999999988766421 122468999998776653 2344443211 123455556666555
Q ss_pred hC-CceEEEEEeCCCC
Q 043039 277 IG-GKKVLLVLDDVWT 291 (949)
Q Consensus 277 l~-~~~~LlVlDdv~~ 291 (949)
.+ +..-+||+|.+-.
T Consensus 148 ~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 148 VRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HTTTCCSEEEEECTTT
T ss_pred HhcCCCCEEEEeChHH
Confidence 54 3455999999843
No 251
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.10 E-value=0.023 Score=58.76 Aligned_cols=157 Identities=17% Similarity=0.151 Sum_probs=78.8
Q ss_pred cCccccchhHHHHHHHHHccCCC-------CCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCH
Q 043039 173 VSEVCGRNEEKNALKGKLLSETA-------EQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDV 245 (949)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 245 (949)
-.+++|.++.+.++.+....-.. +-..... +.|+|++|+||||||+.+..... ...+.+...
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~----- 107 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS----- 107 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH-----
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHH-----
Confidence 35688988776666654321100 0011123 89999999999999999987532 223333321
Q ss_pred HHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCC----------CcccHHH----HHHhhhccC-CC
Q 043039 246 FRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTE----------DGNKWES----FQRCLINAH-RG 310 (949)
Q Consensus 246 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------~~~~~~~----l~~~l~~~~-~g 310 (949)
++..... ......+...+...-...+.++|+|++... ....+.. +...+..+. +.
T Consensus 108 -----~~~~~~~-----~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~ 177 (278)
T 1iy2_A 108 -----DFVEMFV-----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 177 (278)
T ss_dssp -----HHHHSTT-----THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTC
T ss_pred -----HHHHHHh-----hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCC
Confidence 1111110 000111222222222345689999999321 0011122 222222222 12
Q ss_pred -cEEEEEccchhhHh-hh----cCcceEeCCCCChHhHHHHHHHHh
Q 043039 311 -SKILVTTRKETVAR-MI----GSTCVISIEELSEPECWSLFKRFA 350 (949)
Q Consensus 311 -s~iivTtr~~~v~~-~~----~~~~~~~l~~l~~~~~~~l~~~~~ 350 (949)
..++.||....+.. .. .-...+.+...+.++-.+++..++
T Consensus 178 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 223 (278)
T 1iy2_A 178 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 223 (278)
T ss_dssp CEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred CEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 23444555544322 11 224578888889888888888765
No 252
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.06 E-value=0.016 Score=59.58 Aligned_cols=84 Identities=14% Similarity=0.129 Sum_probs=54.1
Q ss_pred EEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCC-----CcchHHH-HHHHHhh
Q 043039 203 VISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPD-----LGELNTL-HQLINNR 276 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~-~~~l~~~ 276 (949)
++-|.|++|+||||||.++.......+.-..++||+....++.. .+++++..... ..+.++. .+.+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 78999999999999998776542211113468999988887754 26666654221 1244444 3333222
Q ss_pred --h-CCceEEEEEeCCCC
Q 043039 277 --I-GGKKVLLVLDDVWT 291 (949)
Q Consensus 277 --l-~~~~~LlVlDdv~~ 291 (949)
+ +++.-+||+|-+-.
T Consensus 105 ~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HTCCTTCCEEEEEECSTT
T ss_pred HHhhccCceEEEEecccc
Confidence 2 46788999999954
No 253
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.99 E-value=0.012 Score=70.69 Aligned_cols=158 Identities=11% Similarity=0.077 Sum_probs=85.0
Q ss_pred cCccccchhHHHHHHHHHccCCC-------CCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCH
Q 043039 173 VSEVCGRNEEKNALKGKLLSETA-------EQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDV 245 (949)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 245 (949)
-.+++|.+..+++|.+++...-. -.-.....|.|+|++|+||||||+.+... ....| +.++...
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~~---- 273 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE---- 273 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHHH----
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEchH----
Confidence 35689999999888887753100 01123346899999999999999999885 22222 3333211
Q ss_pred HHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCC------cc-----cHHHHHHhhhcc--CCCcE
Q 043039 246 FRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTED------GN-----KWESFQRCLINA--HRGSK 312 (949)
Q Consensus 246 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------~~-----~~~~l~~~l~~~--~~gs~ 312 (949)
+..... ......+...+.......+.++++|++.... .. ....+...+... ..+..
T Consensus 274 ----------l~~~~~-g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~ 342 (806)
T 1ypw_A 274 ----------IMSKLA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp ----------HSSSST-THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCE
T ss_pred ----------hhhhhh-hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEE
Confidence 111100 0011122223333333467899999994311 01 112233333222 23345
Q ss_pred EEEEccchhhH-hhhc----CcceEeCCCCChHhHHHHHHHHh
Q 043039 313 ILVTTRKETVA-RMIG----STCVISIEELSEPECWSLFKRFA 350 (949)
Q Consensus 313 iivTtr~~~v~-~~~~----~~~~~~l~~l~~~~~~~l~~~~~ 350 (949)
+|.||...... ..+. -...+.+...+.++-.+++...+
T Consensus 343 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 56666553222 1111 13457788888899889888765
No 254
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.97 E-value=0.011 Score=62.75 Aligned_cols=85 Identities=21% Similarity=0.237 Sum_probs=54.0
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCC-----CCcchHHHHHHHH
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTP-----DLGELNTLHQLIN 274 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 274 (949)
.-+++.|+|++|+||||||.++..... ..-..++|++....++.. .+++++.... ...+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 347999999999999999998876522 122357888887776654 3444443211 1234455555555
Q ss_pred hhhC-CceEEEEEeCCCC
Q 043039 275 NRIG-GKKVLLVLDDVWT 291 (949)
Q Consensus 275 ~~l~-~~~~LlVlDdv~~ 291 (949)
..++ .+.-++|+|.+-.
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 4443 4455899999844
No 255
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.97 E-value=0.0055 Score=58.52 Aligned_cols=117 Identities=15% Similarity=0.011 Sum_probs=62.6
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCC---CCCHHHHHHHHHHh---cCCCC-CCCc-------chH
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSD---PFDVFRVWKAIIEN---LDGYT-PDLG-------ELN 267 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~---l~~~~-~~~~-------~~~ 267 (949)
..|.|++-.|.||||.|-...-. ..++-..+.++..-. .+....++..+.-. .+... .... ...
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalR--A~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAAR--AVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHH--HHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 46667777779999999655432 222323345554332 22333333332100 00000 0000 112
Q ss_pred HHHHHHHhhhCCceE-EEEEeCCCC---CCcccHHHHHHhhhccCCCcEEEEEccch
Q 043039 268 TLHQLINNRIGGKKV-LLVLDDVWT---EDGNKWESFQRCLINAHRGSKILVTTRKE 320 (949)
Q Consensus 268 ~~~~~l~~~l~~~~~-LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 320 (949)
......++.+.+.+| |||||++-. ......+++...+........||+|+|..
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 233445566655555 999999821 12245567777777777778899999984
No 256
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.88 E-value=0.016 Score=58.17 Aligned_cols=114 Identities=17% Similarity=0.065 Sum_probs=60.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCC--------------------
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTP-------------------- 261 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------------------- 261 (949)
.+++|+|.+|+|||||++.+...... .-..++|++... ....+...+. .++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCce
Confidence 58999999999999999998754211 112466766543 3333333322 3221100
Q ss_pred ---CCcchHHHHHHHHhhh---CCceEEEEEeCCCCC---CcccHHHHHHhhhc--cCCCcEEEEEccch
Q 043039 262 ---DLGELNTLHQLINNRI---GGKKVLLVLDDVWTE---DGNKWESFQRCLIN--AHRGSKILVTTRKE 320 (949)
Q Consensus 262 ---~~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~iivTtr~~ 320 (949)
...+...+...+.+.+ +-++.+||+|..-.. +......+...+.. ...|..||++|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 0113344444444433 223349999998521 22334444444433 23477788888765
No 257
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.83 E-value=0.032 Score=59.59 Aligned_cols=57 Identities=18% Similarity=0.240 Sum_probs=39.7
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccc----cccceEEEEEeCCCCCHHHHHHHHHHhcC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVS----NNFNVMIWVCVSDPFDVFRVWKAIIENLD 257 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 257 (949)
.-.++.|+|.+|+||||||.++....... +.-..++|++....++...+. ++++.++
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g 181 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFN 181 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcC
Confidence 45799999999999999998877642111 123578999998877766544 3444443
No 258
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.62 E-value=0.022 Score=60.42 Aligned_cols=88 Identities=16% Similarity=0.211 Sum_probs=52.6
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccc------------ccc--ceEEEEEeCCCCCHHHHHHHHHHhcCCCC------
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVS------------NNF--NVMIWVCVSDPFDVFRVWKAIIENLDGYT------ 260 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~------------~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------ 260 (949)
-.++.|+|.+|+||||+|.++....... +.. ..++|++....++..++.. +++.++...
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDN 176 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcC
Confidence 4699999999999999998877532111 101 4789999988877665553 344444321
Q ss_pred ---CCCcchH---HHHHHHHhhhC--CceEEEEEeCC
Q 043039 261 ---PDLGELN---TLHQLINNRIG--GKKVLLVLDDV 289 (949)
Q Consensus 261 ---~~~~~~~---~~~~~l~~~l~--~~~~LlVlDdv 289 (949)
.+..+.+ .+...+.+.++ .+.-+||+|.+
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0111222 22333444443 34558888887
No 259
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.62 E-value=0.025 Score=59.90 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=38.5
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccc----cccceEEEEEeCCCCCHHHHHHHHHHhcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVS----NNFNVMIWVCVSDPFDVFRVWKAIIENLD 257 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 257 (949)
.++.|+|.+|+||||||.++....... +.-..++|++....++..++. ++++.++
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g 166 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALG 166 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhC
Confidence 589999999999999998887542111 112478999998877766554 3445554
No 260
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.48 E-value=0.026 Score=60.16 Aligned_cols=84 Identities=20% Similarity=0.184 Sum_probs=53.0
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCC-----CCcchHHHHHHHHh
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTP-----DLGELNTLHQLINN 275 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 275 (949)
-+++.|+|.+|+||||||.++.... ...-..++|++....++.. .++.++.... ...+.++....+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~--~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANA--QAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 3589999999999999998887542 1222468899988766643 2444443211 11234555555554
Q ss_pred hhC-CceEEEEEeCCCC
Q 043039 276 RIG-GKKVLLVLDDVWT 291 (949)
Q Consensus 276 ~l~-~~~~LlVlDdv~~ 291 (949)
..+ .+.-+||+|.+-.
T Consensus 134 l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHTTTCCSEEEEECGGG
T ss_pred HHhcCCCCEEEEcChHh
Confidence 443 3456999999843
No 261
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.44 E-value=0.049 Score=58.14 Aligned_cols=91 Identities=21% Similarity=0.222 Sum_probs=51.9
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCccccccc----ceEEEEEeCCCCCHHHHHHHHHHhcCCCC------------CCC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVSNNF----NVMIWVCVSDPFDVFRVWKAIIENLDGYT------------PDL 263 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------~~~ 263 (949)
.-.++.|+|+.|+|||||+..+.......... ..++|++....+.... +..+++..+... ...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~-i~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH-HHHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH-HHHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 44799999999999999999887642111111 2458888776554333 333444433211 000
Q ss_pred cchHHHHHHHHhhhC------CceEEEEEeCCCC
Q 043039 264 GELNTLHQLINNRIG------GKKVLLVLDDVWT 291 (949)
Q Consensus 264 ~~~~~~~~~l~~~l~------~~~~LlVlDdv~~ 291 (949)
.....+...+...+. .+.-+||+|.+-.
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 111223333444443 4677999999843
No 262
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.35 E-value=0.045 Score=57.21 Aligned_cols=38 Identities=16% Similarity=0.126 Sum_probs=26.8
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVS 240 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 240 (949)
.+++|+|.+|+|||||+..+....... .-..++|++..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~-~G~~v~~~~~e 73 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTA-MGKKVGLAMLE 73 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT-SCCCEEEEESS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHH-cCCeEEEEeCc
Confidence 489999999999999999887652221 11146666654
No 263
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.18 E-value=0.021 Score=55.84 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=33.8
Q ss_pred cchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 178 GRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 178 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.|++.++.+.+.+.... .....+|+|.|..|+||||+++.+...
T Consensus 2 ~~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CHHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35667778888776532 234579999999999999999988763
No 264
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.17 E-value=0.039 Score=57.31 Aligned_cols=86 Identities=15% Similarity=0.083 Sum_probs=46.0
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCC-CCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDP-FDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGG 279 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 279 (949)
..+++|+|.+|+||||++..+....... .-..+..+..... ....+.+....+..+.......+...+...+.. + .
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~-~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~-~ 181 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLE-KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F-S 181 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-G
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-c
Confidence 4699999999999999998887542211 1123555555432 223333444444433322112223334444443 3 3
Q ss_pred ceEEEEEeCC
Q 043039 280 KKVLLVLDDV 289 (949)
Q Consensus 280 ~~~LlVlDdv 289 (949)
+.=++|+|-.
T Consensus 182 ~~dlvIiDT~ 191 (296)
T 2px0_A 182 EYDHVFVDTA 191 (296)
T ss_dssp GSSEEEEECC
T ss_pred CCCEEEEeCC
Confidence 3458889954
No 265
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.13 E-value=0.0056 Score=58.80 Aligned_cols=108 Identities=10% Similarity=-0.047 Sum_probs=50.6
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCC--CCcchHHHHHHHHhhhCC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTP--DLGELNTLHQLINNRIGG 279 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~ 279 (949)
.++.|+|+.|+||||++..+.......+ . .++.+...... +.....+...++.... ...+.. .+.+.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g-~-~v~~~~~~~d~--r~~~~~i~s~~g~~~~~~~~~~~~----~~~~~~~~ 75 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK-K-KVAVFKPKIDS--RYHSTMIVSHSGNGVEAHVIERPE----EMRKYIEE 75 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT-C-EEEEEEEC-------CCCEECC----CEECEEESSGG----GGGGGCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEeecccc--ccCcccEEecCCCceeeEEECCHH----HHHHHhcC
Confidence 4788999999999999965554321111 2 23333322110 0000000000110000 001111 12233344
Q ss_pred ceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccch
Q 043039 280 KKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKE 320 (949)
Q Consensus 280 ~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 320 (949)
+.-+|++|.+..-+.+ |......+.+. |..|++|.+..
T Consensus 76 ~~dvviIDE~Q~~~~~-~~~~l~~l~~~--~~~Vi~~Gl~~ 113 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPS-LFEVVKDLLDR--GIDVFCAGLDL 113 (184)
T ss_dssp TEEEEEECCGGGSCTT-HHHHHHHHHHT--TCEEEEEEESB
T ss_pred CCCEEEEECcccCCHH-HHHHHHHHHHC--CCCEEEEeecc
Confidence 5679999999665333 44433333333 77899988853
No 266
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.06 E-value=0.094 Score=52.81 Aligned_cols=23 Identities=43% Similarity=0.624 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|.|||||++.+..-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999763
No 267
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.85 E-value=0.036 Score=59.11 Aligned_cols=83 Identities=16% Similarity=0.146 Sum_probs=51.0
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCC-----CCcchHHHHHHHHh
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTP-----DLGELNTLHQLINN 275 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 275 (949)
-+++.|.|.+|+||||||.++..... ..-..++|++....++... ++.++.... +....+.+.+.+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 35899999999999999988776422 1223688999987776432 344443211 11233444444443
Q ss_pred hhC-CceEEEEEeCCC
Q 043039 276 RIG-GKKVLLVLDDVW 290 (949)
Q Consensus 276 ~l~-~~~~LlVlDdv~ 290 (949)
..+ .+.-+||+|.+-
T Consensus 136 l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 136 LARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHTCCSEEEEECGG
T ss_pred HHhccCCCEEEEcCHH
Confidence 332 344589999983
No 268
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.77 E-value=0.16 Score=50.82 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|+|||||++.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999774
No 269
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.71 E-value=0.14 Score=51.56 Aligned_cols=38 Identities=26% Similarity=0.281 Sum_probs=27.5
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSD 241 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 241 (949)
.++.|.|.+|+||||||.++.... ...-..++|++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALEE 61 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccC
Confidence 489999999999999998776532 11224577877654
No 270
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.67 E-value=0.025 Score=63.20 Aligned_cols=43 Identities=21% Similarity=0.141 Sum_probs=36.2
Q ss_pred ccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCc
Q 043039 175 EVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDA 225 (949)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 225 (949)
.++|+++.++.+...+... .-|.++|++|+|||+||+.+.+..
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHHH
Confidence 4889999999888887643 257899999999999999999853
No 271
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.64 E-value=0.28 Score=48.72 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|.|||||.+.+..-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 272
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.60 E-value=0.077 Score=55.47 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=32.3
Q ss_pred cccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHc
Q 043039 176 VCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYN 223 (949)
Q Consensus 176 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 223 (949)
.+|....+..+...+.... ......+|+|.|..|+||||+++.+..
T Consensus 69 ~~~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3444455555555554432 234678999999999999999998865
No 273
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.42 E-value=0.15 Score=51.24 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHHc
Q 043039 202 QVISLVGMGGIGKTTLAQLAYN 223 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~ 223 (949)
.+++|+|+.|.|||||.+.+..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999875
No 274
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.37 E-value=0.27 Score=51.63 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=36.2
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHh
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIEN 255 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 255 (949)
.++.|.|.+|+||||+|.++..+.-..+ ..++|++.. -+..++...+...
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 5899999999999999988875422222 578888876 4566666666554
No 275
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.30 E-value=0.031 Score=57.83 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=22.7
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 199 NAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 199 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
....+|+|+|..|+||||||+.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999888664
No 276
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.28 E-value=0.031 Score=54.85 Aligned_cols=39 Identities=23% Similarity=0.250 Sum_probs=28.6
Q ss_pred HHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 182 EKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 182 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
-+++|.+.+... .....+++|+|+.|.|||||++.+...
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 445555555432 234579999999999999999988764
No 277
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.26 E-value=0.051 Score=52.08 Aligned_cols=110 Identities=9% Similarity=0.004 Sum_probs=67.6
Q ss_pred cCCCCceEEEecCC-CCC-----CcchhhccCCceeEEEeCCcccc--ccccccccccCCCCCCeeeecccCCc-----c
Q 043039 561 FNAKKLRSLLIQGY-SLQ-----HMPSFFDQLTCLRALRIGKYGDD--AIERIPNGIEKLIHLRYLKLFFVGIE-----E 627 (949)
Q Consensus 561 ~~~~~Lr~L~l~~~-~l~-----~l~~~~~~l~~Lr~L~L~~~~~~--~~~~lp~~i~~l~~L~~L~L~~~~i~-----~ 627 (949)
.+-+.|+.|+|+++ .+. .+...+..-+.|+.|+|++|... ....+-+.+..-..|++|+|++|.|. .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 44567888888875 554 24455666778888888888621 11223444556677888888888876 3
Q ss_pred cchhhcCCCCCcEEeecCCCC--CC-----ccccccccCCCCCeeeCCCc
Q 043039 628 LPETFCELFNLQNLDLRRCSK--FK-----RLPQNIGKLVNLRHLIFDED 670 (949)
Q Consensus 628 lp~~l~~L~~L~~L~L~~~~~--l~-----~lp~~i~~L~~L~~L~l~~~ 670 (949)
+-..+..-+.|++|+|++|.. +. .+...+..-+.|..|+++.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 445555566788888876431 22 13333445566777765544
No 278
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.25 E-value=0.063 Score=58.72 Aligned_cols=86 Identities=17% Similarity=0.283 Sum_probs=48.7
Q ss_pred EEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCC-CHHHHHHHHHHh--cC------CCCCCCcchHH----H
Q 043039 203 VISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPF-DVFRVWKAIIEN--LD------GYTPDLGELNT----L 269 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~--l~------~~~~~~~~~~~----~ 269 (949)
.++|+|.+|+|||||+..+..+.... .-+..+++.+.+.. ...+++.++... +. ....+..-... .
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~ 231 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALT 231 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHH
Confidence 58899999999999999887752221 22445666666554 344555555432 00 11111111111 0
Q ss_pred HHHHHhhh---CCceEEEEEeCC
Q 043039 270 HQLINNRI---GGKKVLLVLDDV 289 (949)
Q Consensus 270 ~~~l~~~l---~~~~~LlVlDdv 289 (949)
.-.+.+++ +++++|+++||+
T Consensus 232 ~ltiAEyFrd~~G~~VLl~~D~i 254 (473)
T 1sky_E 232 GLTMAEYFRDEQGQDGLLFIDNI 254 (473)
T ss_dssp HHHHHHHHHHHSCCEEEEEEECT
T ss_pred HHHHHHHHHHhcCCcEEEEeccH
Confidence 11222332 588999999999
No 279
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.19 E-value=0.55 Score=51.16 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
...+|.++|.+|+||||++..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4789999999999999999877653
No 280
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.19 E-value=0.021 Score=54.20 Aligned_cols=19 Identities=47% Similarity=0.739 Sum_probs=18.4
Q ss_pred EEEEEecCCChHHHHHHHH
Q 043039 203 VISLVGMGGIGKTTLAQLA 221 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v 221 (949)
+|+|.|++|+||||+|+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 281
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.19 E-value=0.11 Score=56.34 Aligned_cols=55 Identities=15% Similarity=0.244 Sum_probs=36.4
Q ss_pred EEEEEEecCCChHHHHHHHHHcCccc----ccccceEEEEEeCCCCCHHHHHHHHHHhcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADV----SNNFNVMIWVCVSDPFDVFRVWKAIIENLD 257 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 257 (949)
.++.|+|.+|+|||||+..++-.... .+.-..++|++....++...+ ..+++.++
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 58999999999999999976422111 112356889988776665443 33555554
No 282
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.17 E-value=0.13 Score=51.13 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=31.1
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCccc---cc-ccceEEEEEeCCCCCH
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADV---SN-NFNVMIWVCVSDPFDV 245 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~-~f~~~~wv~~~~~~~~ 245 (949)
-.+++|+|+.|+|||||++.+...... .+ ....++|+........
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 469999999999999999998752111 11 2345788876654443
No 283
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.15 E-value=0.053 Score=57.28 Aligned_cols=54 Identities=13% Similarity=-0.035 Sum_probs=33.8
Q ss_pred HHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccc-cccceEEEEEeCCCC
Q 043039 184 NALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVS-NNFNVMIWVCVSDPF 243 (949)
Q Consensus 184 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~ 243 (949)
-++++.+..-. .-..++|+|.+|+|||||++.+.+..... ..+. ++++-+.+..
T Consensus 162 iraID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~ 216 (422)
T 3ice_A 162 ARVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERP 216 (422)
T ss_dssp HHHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCH
T ss_pred ceeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCCh
Confidence 34556665432 23478999999999999999887642111 1233 3456666544
No 284
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.06 E-value=0.029 Score=54.13 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=21.7
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..+++|+|+.|+||||+++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999874
No 285
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.04 E-value=0.13 Score=53.51 Aligned_cols=22 Identities=41% Similarity=0.750 Sum_probs=20.3
Q ss_pred EEEEEEecCCChHHHHHHHHHc
Q 043039 202 QVISLVGMGGIGKTTLAQLAYN 223 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~ 223 (949)
.+++|+|+.|.|||||++.+..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 4899999999999999999876
No 286
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.04 E-value=0.024 Score=54.01 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+|.|+|++|+||||+|+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999874
No 287
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.03 E-value=0.41 Score=52.17 Aligned_cols=90 Identities=16% Similarity=0.045 Sum_probs=47.0
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCC-CCHHHHHHHHHHhcCCCC---CCCcchHHHH-HHHH
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDP-FDVFRVWKAIIENLDGYT---PDLGELNTLH-QLIN 274 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~---~~~~~~~~~~-~~l~ 274 (949)
..++|.++|.+|+||||++..+....... -..+..+++... ....+.+....+..+.+. ....+...+. ..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~--G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~ 173 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR--GYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVD 173 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT--TCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHH
Confidence 46899999999999999998887542222 123444554321 122333344444444321 1112222222 3333
Q ss_pred hhhCCceEEEEEeCCCC
Q 043039 275 NRIGGKKVLLVLDDVWT 291 (949)
Q Consensus 275 ~~l~~~~~LlVlDdv~~ 291 (949)
....+..=++|+|-...
T Consensus 174 ~a~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 174 IFVKNKMDIIIVDTAGR 190 (433)
T ss_dssp HTTTTTCSEEEEEECCC
T ss_pred HHHhcCCCEEEEECCCC
Confidence 33323344668887753
No 288
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.01 E-value=0.14 Score=53.29 Aligned_cols=88 Identities=16% Similarity=0.153 Sum_probs=47.7
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCH--HHHHHHHHHhcCCCC---CCCcchHH-HHHHH
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDV--FRVWKAIIENLDGYT---PDLGELNT-LHQLI 273 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~---~~~~~~~~-~~~~l 273 (949)
...+++|+|.+|+||||++..+...... .-..+.++.... +.. .+-+...++..+... ....+... ....+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~D~-~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAADT-FRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECT-TCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEcccc-ccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 4679999999999999999888764222 122355555432 222 222334444433211 11122222 23344
Q ss_pred HhhhCCceEEEEEeCCC
Q 043039 274 NNRIGGKKVLLVLDDVW 290 (949)
Q Consensus 274 ~~~l~~~~~LlVlDdv~ 290 (949)
.+.+..+.-++|+|-.-
T Consensus 180 ~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 180 AHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHTTCSEEEEEECC
T ss_pred HHHHhcCCCEEEEECCC
Confidence 44444445588889774
No 289
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.00 E-value=0.35 Score=49.05 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
+++|+|+.|.|||||.+.+..-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999763
No 290
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.91 E-value=0.05 Score=56.33 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=28.9
Q ss_pred HHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 182 EKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 182 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++++..+..... ......+|.|.|++|+||||+|+.+...
T Consensus 15 ~~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 15 RLNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp HHHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34444444443321 2345678999999999999999999763
No 291
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.88 E-value=0.029 Score=53.51 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHHc
Q 043039 202 QVISLVGMGGIGKTTLAQLAYN 223 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~ 223 (949)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999986
No 292
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.85 E-value=0.028 Score=53.23 Aligned_cols=22 Identities=27% Similarity=0.178 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
+|+|.|++|+||||+|+.+...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999998764
No 293
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.83 E-value=0.028 Score=53.76 Aligned_cols=23 Identities=17% Similarity=0.479 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
++++|+|+.|+|||||++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999998764
No 294
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.81 E-value=0.27 Score=52.16 Aligned_cols=54 Identities=20% Similarity=0.229 Sum_probs=33.4
Q ss_pred HHHhhhCCceEEEEEeCCCCC-CcccHHHHHHhhhcc--CCCcEEEEEccchhhHhh
Q 043039 272 LINNRIGGKKVLLVLDDVWTE-DGNKWESFQRCLINA--HRGSKILVTTRKETVARM 325 (949)
Q Consensus 272 ~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~ 325 (949)
.+.+.|-.++=+|++|.--.. |...-..+...+..- ..|..||++|.+...+..
T Consensus 173 aIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~ 229 (366)
T 3tui_C 173 AIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKR 229 (366)
T ss_dssp HHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHH
T ss_pred HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 355666777889999997432 323333445444432 236778888888766554
No 295
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.57 E-value=0.066 Score=56.28 Aligned_cols=46 Identities=22% Similarity=0.199 Sum_probs=31.6
Q ss_pred ccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 177 CGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 177 ~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
++-+.-.+++.+.+...- ..+....|.|+|++|+||||+++.+...
T Consensus 2 ~~~~~L~~~il~~l~~~i--~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRI--EDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CCHHHHHHHHHHHHHHTT--TTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHh--ccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 344455566666654322 1234567999999999999999988764
No 296
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.57 E-value=0.03 Score=54.49 Aligned_cols=23 Identities=39% Similarity=0.382 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+|+|+|++|+||||+|+.+...
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 48999999999999999999864
No 297
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.52 E-value=0.041 Score=53.63 Aligned_cols=25 Identities=36% Similarity=0.333 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
...+|+|+|+.|.||||+++.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999998875
No 298
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.50 E-value=0.15 Score=53.75 Aligned_cols=51 Identities=12% Similarity=0.046 Sum_probs=35.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhc
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENL 256 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 256 (949)
.++.|.|.+|+||||+|..+..+... .-..++|++.. -+..++...++...
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE--ms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE--MSAEQLALRALSDL 97 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS--SCHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC--CCHHHHHHHHHHHh
Confidence 48899999999999999888765222 22467777765 45566666665543
No 299
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.41 E-value=0.025 Score=54.05 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
|.|.|+|+.|+|||||++.+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 35889999999999999998764
No 300
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.41 E-value=0.061 Score=54.62 Aligned_cols=43 Identities=21% Similarity=0.207 Sum_probs=29.9
Q ss_pred hHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 181 EEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 181 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
...+++.+.+..... ......+|.|+|++|+||||+|+.+...
T Consensus 13 ~~~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 13 HALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp HHHHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 334445444444332 3345678999999999999999998764
No 301
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.40 E-value=0.053 Score=58.52 Aligned_cols=50 Identities=26% Similarity=0.237 Sum_probs=36.1
Q ss_pred ccccchhHHHHHHHHHccC-------C--CCCCCCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 175 EVCGRNEEKNALKGKLLSE-------T--AEQPNAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~-------~--~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.++|.+..++.+...+... . .......+.+.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3789999888888877210 0 001113456889999999999999999875
No 302
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.35 E-value=0.049 Score=52.60 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=21.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..+|.|.|++|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998764
No 303
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.34 E-value=0.031 Score=52.91 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+|+|+|+.|+||||+++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999874
No 304
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.33 E-value=0.29 Score=57.76 Aligned_cols=158 Identities=14% Similarity=0.166 Sum_probs=78.9
Q ss_pred cCccccchhHHHHHHHHHccCCC-------CCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCH
Q 043039 173 VSEVCGRNEEKNALKGKLLSETA-------EQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDV 245 (949)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 245 (949)
-..+.|-++..++|.+.+...-. .+....+-+.++|++|.|||.+|+++.+... .. ++.++.
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~--~~-----f~~v~~---- 544 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--AN-----FISIKG---- 544 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT--CE-----EEECCH----
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC--Cc-----eEEecc----
Confidence 34577888888888776643211 0112334578999999999999999998632 22 222321
Q ss_pred HHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCC----------cc----cHHHHHHhhhccCC-C
Q 043039 246 FRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTED----------GN----KWESFQRCLINAHR-G 310 (949)
Q Consensus 246 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~----~~~~l~~~l~~~~~-g 310 (949)
.+++....+. ....+.+.+...-+..+.+|+||+++.-- .. ...++...+..... .
T Consensus 545 ----~~l~s~~vGe-----se~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~ 615 (806)
T 3cf2_A 545 ----PELLTMWFGE-----SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 615 (806)
T ss_dssp ----HHHHTTTCSS-----CHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSS
T ss_pred ----chhhccccch-----HHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCC
Confidence 1222221111 12233333333435678999999995310 00 12223333332222 2
Q ss_pred cEEEE-EccchhhH-hhh----cCcceEeCCCCChHhHHHHHHHHh
Q 043039 311 SKILV-TTRKETVA-RMI----GSTCVISIEELSEPECWSLFKRFA 350 (949)
Q Consensus 311 s~iiv-Ttr~~~v~-~~~----~~~~~~~l~~l~~~~~~~l~~~~~ 350 (949)
..+|| ||...... ..+ .-+..+.+..-+.++-.++|+.+.
T Consensus 616 ~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 616 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 22333 55433222 111 125577787777777778887655
No 305
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.32 E-value=0.034 Score=53.33 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
+.|.|+|++|+||||+|+.+...
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999999764
No 306
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.28 E-value=0.043 Score=53.03 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+|.|.|++|+||||+|+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999874
No 307
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.22 E-value=0.052 Score=51.49 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..+|+|+|+.|+||||+++.+...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 468999999999999999998763
No 308
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.17 E-value=0.047 Score=58.19 Aligned_cols=111 Identities=12% Similarity=0.176 Sum_probs=58.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH-HHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCc
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFR-VWKAIIENLDGYTPDLGELNTLHQLINNRIGGK 280 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 280 (949)
.+++|+|+.|.||||+.+.+...... .....+ +++.++..... -...++.+.. ...+.......+.+.|...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~--~~~~~i-~t~ed~~e~~~~~~~~~v~q~~----~~~~~~~~~~~La~aL~~~ 196 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNN--TKYHHI-LTIEDPIEFVHESKKCLVNQRE----VHRDTLGFSEALRSALRED 196 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHH--HCCCEE-EEEESSCCSCCCCSSSEEEEEE----BTTTBSCHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccC--CCCcEE-EEccCcHHhhhhccccceeeee----eccccCCHHHHHHHHhhhC
Confidence 49999999999999999988663111 111111 22222211100 0000000000 0011123445788888888
Q ss_pred eEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccchhhHh
Q 043039 281 KVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKETVAR 324 (949)
Q Consensus 281 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 324 (949)
+=+|++|..-+ ...+..+... ...|.-||+|+.......
T Consensus 197 PdvillDEp~d--~e~~~~~~~~---~~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 197 PDIILVGEMRD--LETIRLALTA---AETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp CSEEEESCCCS--HHHHHHHHHH---HHTTCEEEEEESCSSHHH
T ss_pred cCEEecCCCCC--HHHHHHHHHH---HhcCCEEEEEEccChHHH
Confidence 88999999953 2333333332 233666888988765543
No 309
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.13 E-value=0.14 Score=57.07 Aligned_cols=38 Identities=18% Similarity=0.317 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 180 NEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 180 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+.+..+.+.+.... +.+.|.|.+|+||||++..+...
T Consensus 31 ~~av~~~~~~i~~~~-------~~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 31 KNAFNIVMKAIKEKK-------HHVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp HHHHHHHHHHHHSSS-------CEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-------CEEEEEeCCCCCHHHHHHHHHHH
Confidence 344555555654321 28899999999999999888765
No 310
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.07 E-value=0.5 Score=49.98 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|.|||||.+.+..-
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTS
T ss_pred CEEEEECCCCccHHHHHHHHHcC
Confidence 48999999999999999999763
No 311
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.04 E-value=0.11 Score=46.20 Aligned_cols=52 Identities=19% Similarity=0.257 Sum_probs=31.3
Q ss_pred EEEeCCccccccc--cccccccCCCCCCeeeecccCCcccchh-hcCCCCCcEEeecCCC
Q 043039 591 ALRIGKYGDDAIE--RIPNGIEKLIHLRYLKLFFVGIEELPET-FCELFNLQNLDLRRCS 647 (949)
Q Consensus 591 ~L~L~~~~~~~~~--~lp~~i~~l~~L~~L~L~~~~i~~lp~~-l~~L~~L~~L~L~~~~ 647 (949)
+++.+++. ++ .+|..+ -.+|++|+|++|.|+.+|.. +..+++|++|+|++|.
T Consensus 12 ~v~Cs~~~---L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRG---LTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSC---CCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCC---CccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 44555544 44 555432 23567777777777777643 4566777777777765
No 312
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.94 E-value=0.045 Score=53.66 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=21.6
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..+++|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 458999999999999999999875
No 313
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.93 E-value=0.044 Score=53.41 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..+|+|+|+.|+||||+++.+...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999764
No 314
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.93 E-value=0.057 Score=52.68 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=22.6
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 199 NAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 199 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
....+|+|.|+.|+||||+|+.+...
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999998863
No 315
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.92 E-value=0.052 Score=52.05 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.2
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
...|+|+|+.|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999998763
No 316
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.91 E-value=0.37 Score=52.74 Aligned_cols=59 Identities=19% Similarity=0.153 Sum_probs=35.4
Q ss_pred HHHHHHHHHccCCCC---CCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCC
Q 043039 182 EKNALKGKLLSETAE---QPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSD 241 (949)
Q Consensus 182 ~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 241 (949)
-.+++.++|...... .....++|.++|.+|+||||++..+......+. -..+.-+++..
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~-G~kVllvd~D~ 139 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKH-KKKVLVVSADV 139 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTS-CCCEEEEECCC
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhc-CCeEEEEecCC
Confidence 345566666432210 123578999999999999999988765422220 22355555543
No 317
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.90 E-value=0.055 Score=52.12 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=20.1
Q ss_pred EEEEEEecCCChHHHHHHHHHc
Q 043039 202 QVISLVGMGGIGKTTLAQLAYN 223 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~ 223 (949)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 318
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.89 E-value=0.057 Score=52.60 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=22.9
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 199 NAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 199 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
....+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35679999999999999999999873
No 319
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.87 E-value=0.39 Score=50.33 Aligned_cols=40 Identities=25% Similarity=0.225 Sum_probs=27.9
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeC
Q 043039 199 NAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVS 240 (949)
Q Consensus 199 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 240 (949)
...++++|+|.+|+||||++..+...... .-..+.++...
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~D 142 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAAD 142 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCC
Confidence 45689999999999999999888764221 22335555543
No 320
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.86 E-value=0.063 Score=52.56 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=22.3
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
...+|+|+|+.|+||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999874
No 321
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.85 E-value=0.048 Score=52.55 Aligned_cols=23 Identities=39% Similarity=0.712 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+|.|.|++|+||||+|+.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998774
No 322
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.85 E-value=0.05 Score=51.38 Aligned_cols=23 Identities=30% Similarity=0.683 Sum_probs=19.9
Q ss_pred eEEEEEEecCCChHHHHHHHHHc
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYN 223 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~ 223 (949)
..+++|+|+.|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 35899999999999999997553
No 323
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.85 E-value=0.04 Score=53.75 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+|+|.|+.|+||||+|+.+...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999998764
No 324
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.84 E-value=0.19 Score=53.00 Aligned_cols=106 Identities=11% Similarity=0.080 Sum_probs=54.5
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCcchHHHHHHHHhhhCCce
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDLGELNTLHQLINNRIGGKK 281 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 281 (949)
.+++|+|+.|.|||||++.+..... .-...+.+.-........ .-..+..- .+ .-......+.+.|..++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~---~~~g~i~i~~~~e~~~~~----~~~~i~~~-~g--gg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP---KEERIISIEDTEEIVFKH----HKNYTQLF-FG--GNITSADCLKSCLRMRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC---TTSCEEEEESSCCCCCSS----CSSEEEEE-CB--TTBCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc---CCCcEEEECCeecccccc----chhEEEEE-eC--CChhHHHHHHHHhhhCC
Confidence 3899999999999999999987421 223444444222111000 00000000 00 11123345666777778
Q ss_pred EEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccchhh
Q 043039 282 VLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKETV 322 (949)
Q Consensus 282 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 322 (949)
=+|++|++-.. ..++.+ ..+..+ +.-+|+||....+
T Consensus 242 ~ilildE~~~~--e~~~~l-~~~~~g--~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 242 DRIILGELRSS--EAYDFY-NVLCSG--HKGTLTTLHAGSS 277 (330)
T ss_dssp SEEEECCCCST--HHHHHH-HHHHTT--CCCEEEEEECSSH
T ss_pred CEEEEcCCChH--HHHHHH-HHHhcC--CCEEEEEEcccHH
Confidence 89999998542 333322 223222 2236777765443
No 325
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.79 E-value=0.053 Score=55.03 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+|.|+|+.|+||||||+.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999764
No 326
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.76 E-value=0.058 Score=56.49 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=27.5
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCC
Q 043039 199 NAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSD 241 (949)
Q Consensus 199 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 241 (949)
.+.+||+|.|-|||||||.+..+..- ....-..+.-|++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~a--LA~~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHH--HHHCCCeEEEEecCC
Confidence 36789999999999999999766442 111222356666653
No 327
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.73 E-value=0.042 Score=53.71 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
...+|+|+|++|+||||+++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999998764
No 328
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.71 E-value=0.042 Score=52.47 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=21.1
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.++|.|+|++|+||||+|+.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 357899999999999999998864
No 329
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.68 E-value=0.055 Score=52.86 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|+|||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 48999999999999999998763
No 330
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.63 E-value=0.066 Score=52.60 Aligned_cols=25 Identities=40% Similarity=0.340 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
...+|+|+|+.|+|||||++.+...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998763
No 331
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.62 E-value=0.043 Score=52.72 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999998764
No 332
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.62 E-value=0.059 Score=51.79 Aligned_cols=25 Identities=16% Similarity=0.501 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..++++|+|+.|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4468999999999999999998764
No 333
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.62 E-value=0.06 Score=52.06 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.1
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..+|+|.|++|+||||+|+.+...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999988763
No 334
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.61 E-value=0.06 Score=51.14 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.++|+|+.|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999988764
No 335
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.58 E-value=0.25 Score=53.74 Aligned_cols=24 Identities=38% Similarity=0.286 Sum_probs=21.1
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..+++|+|.+|+||||++..+...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999888764
No 336
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.57 E-value=0.076 Score=52.06 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=23.3
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 199 NAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 199 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
...++|.|.|++|+||||.|+.+...
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999998874
No 337
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.53 E-value=0.056 Score=52.73 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999874
No 338
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.52 E-value=0.075 Score=50.98 Aligned_cols=25 Identities=36% Similarity=0.343 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
...+|.|.|++|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998875
No 339
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.50 E-value=0.059 Score=52.60 Aligned_cols=21 Identities=43% Similarity=0.510 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHHc
Q 043039 203 VISLVGMGGIGKTTLAQLAYN 223 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~ 223 (949)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999876
No 340
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.49 E-value=0.059 Score=50.69 Aligned_cols=25 Identities=36% Similarity=0.420 Sum_probs=21.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
...+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998764
No 341
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.46 E-value=0.92 Score=45.13 Aligned_cols=89 Identities=17% Similarity=0.145 Sum_probs=45.0
Q ss_pred EEEEEecCCChHHHHHHHHHcC-ccccccc-ceEEEEEeCCCCCHHHHHHHHHHhcCCCCC---------------CC--
Q 043039 203 VISLVGMGGIGKTTLAQLAYND-ADVSNNF-NVMIWVCVSDPFDVFRVWKAIIENLDGYTP---------------DL-- 263 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~-~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------------~~-- 263 (949)
.+.|.|..|.||||+...+.-+ ....+.. ...+.+......-...+...+...++.... ..
T Consensus 78 ~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 157 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHAS 157 (235)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSSE
T ss_pred EEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCCe
Confidence 7899999999999877554322 1111222 223333333323333444444444332210 00
Q ss_pred ---cchHHHHHHHHhhhCCceEEEEEeCCCCC
Q 043039 264 ---GELNTLHQLINNRIGGKKVLLVLDDVWTE 292 (949)
Q Consensus 264 ---~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 292 (949)
...+.+.+.+...+++-+ +||+|.++..
T Consensus 158 Ivv~Tpg~l~~~l~~~l~~~~-~lVlDEah~~ 188 (235)
T 3llm_A 158 IMFCTVGVLLRKLEAGIRGIS-HVIVDEIHER 188 (235)
T ss_dssp EEEEEHHHHHHHHHHCCTTCC-EEEECCTTSC
T ss_pred EEEECHHHHHHHHHhhhcCCc-EEEEECCccC
Confidence 123445555555444433 7899999753
No 342
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.44 E-value=0.053 Score=58.18 Aligned_cols=45 Identities=24% Similarity=0.233 Sum_probs=32.7
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..++|.+..++.+...+.... ..-+.|+|++|+|||++|+.+.+.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 458999887666554443221 123889999999999999999874
No 343
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.41 E-value=0.058 Score=52.74 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|+||||+++.+...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999998764
No 344
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.39 E-value=0.061 Score=52.07 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.2
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..+|+|.|++|+||||+|+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999998763
No 345
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.39 E-value=0.067 Score=52.10 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
...+|+|.|++|+||||+|+.+...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999998763
No 346
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.38 E-value=0.07 Score=52.20 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=20.2
Q ss_pred EEEEEEecCCChHHHHHHHHHc
Q 043039 202 QVISLVGMGGIGKTTLAQLAYN 223 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~ 223 (949)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 347
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.37 E-value=0.29 Score=53.58 Aligned_cols=64 Identities=20% Similarity=0.190 Sum_probs=44.0
Q ss_pred HHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCC-CHHHHHHHHHHh
Q 043039 186 LKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPF-DVFRVWKAIIEN 255 (949)
Q Consensus 186 l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 255 (949)
.++.|..-. +-..++|.|.+|+|||+|+..+.++. .+.+-+.++++-+.+.. .+.++++++.+.
T Consensus 155 vID~l~pig-----kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 155 VVNLLAPYR-----RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp THHHHSCCC-----TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred Eeeeecccc-----cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 566665432 23468999999999999998887751 12344677888887655 566777777653
No 348
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.35 E-value=0.06 Score=50.29 Aligned_cols=25 Identities=36% Similarity=0.363 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..++++|+|..|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999998774
No 349
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.28 E-value=0.3 Score=51.25 Aligned_cols=25 Identities=40% Similarity=0.344 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
...+++|+|+.|+||||+++.+...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999988764
No 350
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.28 E-value=0.07 Score=54.41 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.3
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999998864
No 351
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.26 E-value=0.061 Score=51.03 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.|.|.|++|+||||+|+.+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 352
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.24 E-value=0.076 Score=50.87 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=21.0
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
...|+|.|++|+||||+|+.+...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998763
No 353
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.18 E-value=0.066 Score=53.32 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998763
No 354
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.14 E-value=0.054 Score=52.60 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
++++|+|+.|+|||||++.+...
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999988763
No 355
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.08 E-value=0.078 Score=51.12 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..+|+|.|++|+||||+|+.+...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998763
No 356
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.06 E-value=0.57 Score=51.06 Aligned_cols=65 Identities=20% Similarity=0.229 Sum_probs=43.6
Q ss_pred HHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCC-CHHHHHHHHHHh
Q 043039 185 ALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPF-DVFRVWKAIIEN 255 (949)
Q Consensus 185 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 255 (949)
+.++.|..-. +-..++|.|.+|+|||+|+..+.+.. .+.+-+.++++-+.+.. .+.++++++.+.
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 4666665432 23468999999999999998887752 12233567777777654 456677777654
No 357
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.05 E-value=0.046 Score=52.28 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=17.2
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..+|.|.|++|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999998764
No 358
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.05 E-value=0.055 Score=51.79 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
+|+|.|++|+||||+|+.+...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998763
No 359
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.04 E-value=0.073 Score=51.63 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+|+|.|++|+||||+|+.+...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999998774
No 360
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.01 E-value=0.27 Score=49.60 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=30.3
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHH
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKA 251 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 251 (949)
.++.|.|.+|+|||++|.++..+. ....-..+++++... +...+.+.
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~--~~~~~~~~ 77 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEE--RARDLRRE 77 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSS--CHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccC--CHHHHHHH
Confidence 588999999999999998765431 112234566766554 34444443
No 361
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.01 E-value=0.12 Score=52.06 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
...+|+|.|++|+||||+|+.+...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998763
No 362
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.00 E-value=0.081 Score=51.95 Aligned_cols=23 Identities=30% Similarity=0.448 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+|+|.|++|+||||+|+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 363
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=92.00 E-value=0.13 Score=49.63 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=17.2
Q ss_pred EEEEEecCCChHHHHHHHHH
Q 043039 203 VISLVGMGGIGKTTLAQLAY 222 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~ 222 (949)
+..|.|.+|.|||++|....
T Consensus 7 i~l~tG~pGsGKT~~a~~~~ 26 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMM 26 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 67899999999999997653
No 364
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.92 E-value=0.87 Score=50.72 Aligned_cols=42 Identities=24% Similarity=0.168 Sum_probs=27.5
Q ss_pred HHHHHHHHccCCCC---CCCCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 183 KNALKGKLLSETAE---QPNAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 183 ~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.++|.+.+...... .....++|+|+|.+|+||||++..+...
T Consensus 80 ~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 80 FKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp HHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44555555432211 1145789999999999999999888753
No 365
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.90 E-value=0.26 Score=51.07 Aligned_cols=87 Identities=16% Similarity=0.056 Sum_probs=45.0
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCH-HHHHHHHHHhcCCCCC---CCcchHHHHH-HHHh
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDV-FRVWKAIIENLDGYTP---DLGELNTLHQ-LINN 275 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~i~~~l~~~~~---~~~~~~~~~~-~l~~ 275 (949)
..+++|+|.+|+||||++..++..... .-..+.++........ ...+..+.+..+...- ...+...+.. .+..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~--~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~ 175 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEK 175 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999988764221 1223555554332211 1123334444332211 1123333322 3333
Q ss_pred hhCCceEEEEEeCC
Q 043039 276 RIGGKKVLLVLDDV 289 (949)
Q Consensus 276 ~l~~~~~LlVlDdv 289 (949)
....+.=+||+|-.
T Consensus 176 ~~~~~~D~viiDtp 189 (295)
T 1ls1_A 176 ARLEARDLILVDTA 189 (295)
T ss_dssp HHHHTCCEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 32233447888976
No 366
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.90 E-value=0.095 Score=50.39 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=22.4
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHc
Q 043039 199 NAIQVISLVGMGGIGKTTLAQLAYN 223 (949)
Q Consensus 199 ~~~~vi~I~G~~GiGKTtLa~~v~~ 223 (949)
....+|+|+|+.|+||||+|+.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999876
No 367
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.90 E-value=0.076 Score=49.88 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998773
No 368
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.90 E-value=0.28 Score=50.77 Aligned_cols=89 Identities=17% Similarity=0.043 Sum_probs=47.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCC-CHHHHHHHHHHhcCCC---CCCCcchHHHHHHHHhh
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPF-DVFRVWKAIIENLDGY---TPDLGELNTLHQLINNR 276 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~---~~~~~~~~~~~~~l~~~ 276 (949)
..+++++|.+|+||||++..+...... .-..+.+++..... ...+.+....+..+.. .....+...+.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~--~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK--KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH--TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 579999999999999999888764221 22345666655332 2233344444444322 11112333333333333
Q ss_pred hC-CceEEEEEeCCCC
Q 043039 277 IG-GKKVLLVLDDVWT 291 (949)
Q Consensus 277 l~-~~~~LlVlDdv~~ 291 (949)
++ +.-=++|+|-.-.
T Consensus 176 ~~~~~~D~ViIDTpg~ 191 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAGR 191 (297)
T ss_dssp HHHTTCSEEEEECCCS
T ss_pred HHhCCCCEEEEeCCCC
Confidence 33 2223788998643
No 369
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.88 E-value=0.4 Score=52.83 Aligned_cols=25 Identities=40% Similarity=0.460 Sum_probs=22.3
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
...+++|+|..|+|||||++.+...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH
Confidence 4579999999999999999998764
No 370
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.87 E-value=0.097 Score=54.00 Aligned_cols=24 Identities=38% Similarity=0.619 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHHc
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYN 223 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~ 223 (949)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999873
No 371
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.85 E-value=0.09 Score=54.97 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
...+++|+|+.|+|||||++.+..-
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 4579999999999999999988763
No 372
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.84 E-value=0.12 Score=49.71 Aligned_cols=25 Identities=32% Similarity=0.325 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
....|+|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999998775
No 373
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.82 E-value=0.085 Score=53.50 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
...+|+|.|+.|+||||+|+.+...
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999988763
No 374
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.77 E-value=0.082 Score=53.42 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHc
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYN 223 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~ 223 (949)
..+|+|+|+.|+||||+++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999984
No 375
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.74 E-value=0.067 Score=50.52 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
+|.|.|++|+||||+|+.+...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998763
No 376
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.72 E-value=0.25 Score=53.15 Aligned_cols=108 Identities=13% Similarity=0.166 Sum_probs=54.7
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccce-EEEEEeCCCCCHHHHHHHHHHh--cCCCCCCCcchHHHHHHHHhhh
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNV-MIWVCVSDPFDVFRVWKAIIEN--LDGYTPDLGELNTLHQLINNRI 277 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~--l~~~~~~~~~~~~~~~~l~~~l 277 (949)
-.+++|+|+.|+||||+++.+...... .... ++++.-.-.+..... ..++.| ++. +.......+...+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~--~~~g~I~~~e~~~e~~~~~~-~~~v~Q~~~g~------~~~~~~~~l~~~L 206 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQ--TKSYHIITIEDPIEYVFKHK-KSIVNQREVGE------DTKSFADALRAAL 206 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHH--HSCCEEEEEESSCCSCCCCS-SSEEEEEEBTT------TBSCSHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCc--CCCcEEEEecccHhhhhccC-ceEEEeeecCC------CHHHHHHHHHHHh
Confidence 468999999999999999988763111 1112 223321111000000 000000 000 1112244666777
Q ss_pred CCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccchhh
Q 043039 278 GGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKETV 322 (949)
Q Consensus 278 ~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 322 (949)
...+=+|++|.+.+ .... ...+.....|.-|+.|+....+
T Consensus 207 ~~~pd~illdE~~d--~e~~---~~~l~~~~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 207 REDPDVIFVGEMRD--LETV---ETALRAAETGHLVFGTLHTNTA 246 (372)
T ss_dssp TSCCSEEEESCCCS--HHHH---HHHHHHHTTTCEEEECCCCCSH
T ss_pred hhCcCEEEECCCCC--HHHH---HHHHHHHhcCCEEEEEECcchH
Confidence 66777899999852 2222 2223223446668878776543
No 377
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=91.72 E-value=1.2 Score=59.65 Aligned_cols=215 Identities=13% Similarity=0.085 Sum_probs=0.0
Q ss_pred EEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCC--------CCCCcchHHHHHHHHh
Q 043039 204 ISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGY--------TPDLGELNTLHQLINN 275 (949)
Q Consensus 204 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~--------~~~~~~~~~~~~~l~~ 275 (949)
+.++|++|+|||++|+.+... ..-...+.++.+...+...+++.+-..+... .+..
T Consensus 1270 vLL~GPpGtGKT~la~~~l~~----~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~------------ 1333 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNALRN----SSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKS------------ 1333 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHHS----CSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBS------------
T ss_pred EEEECCCCCCHHHHHHHHHhc----CCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCC------------
Q ss_pred hhCCceEEEEEeCCCCCCcc------cHHHHHHhhhccC------------CCcEEEEEccch------hhHhhhcC-cc
Q 043039 276 RIGGKKVLLVLDDVWTEDGN------KWESFQRCLINAH------------RGSKILVTTRKE------TVARMIGS-TC 330 (949)
Q Consensus 276 ~l~~~~~LlVlDdv~~~~~~------~~~~l~~~l~~~~------------~gs~iivTtr~~------~v~~~~~~-~~ 330 (949)
.+++.++.+||+.-...+ ..+.++..+..++ .+..+|-++... .+...... ..
T Consensus 1334 --~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~ 1411 (2695)
T 4akg_A 1334 --DIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAA 1411 (2695)
T ss_dssp --SSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEE
T ss_pred --CCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheee
Q ss_pred eEeCCCCChHhHHHHHHHHhhccCCCCCchhHHHHHHHHHHhcCCCchHHHHHHhhhccCCCHHHHHHHHhhhccchhhh
Q 043039 331 VISIEELSEPECWSLFKRFAFLNRSRSDCKQLEEIGRKITWKCKGLPLAVKTIGSLLRFKKAREEWQSILDSEIWQVEEF 410 (949)
Q Consensus 331 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~ 410 (949)
++.+...+.++-..+|.....+.-. ..+....++..|+... .+.|..+...
T Consensus 1412 vi~i~~P~~~~l~~I~~~il~~~l~--~~~~v~~~~~~lv~at-------------------i~~y~~v~~~-------- 1462 (2695)
T 4akg_A 1412 ILYLGYPSGKSLSQIYEIYYKAIFK--LVPEFRSYTEPFARAS-------------------VHLYNECKAR-------- 1462 (2695)
T ss_dssp EEECCCCTTTHHHHHHHHHHHHHTT--SSGGGGGGHHHHHHHH-------------------HHHHHHHHHH--------
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHH-------------------HHHHHHHHHH--------
Q ss_pred ccchHHHHHhccCCCChhHHHHHhhhccc-CCCcccChhhHHHHHHHcCccccCCChhhhhHHHHHHHHHHHHHHh
Q 043039 411 EKNLLPALLLSYNDLPNEIKRCFSYCAVL-PKECYVDRDELIKLWMAQGYIDQKGNKEMEMEMEMVGERYFDLLAK 485 (949)
Q Consensus 411 ~~~i~~~l~~sy~~L~~~~k~cf~~~a~f-p~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~~~~l~~L~~ 485 (949)
+.+.-+.-|--=+.++-+.|.-+... +....-+...++++|+ ++..+.+.+.|++
T Consensus 1463 ---~~~~~k~HY~FnlRDLsrv~qGll~~~~~~~~~~~~~l~rLw~-----------------HE~~Rvf~DRLv~ 1518 (2695)
T 4akg_A 1463 ---YSTGLQSHYLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLWA-----------------YEAWRIFADRLVG 1518 (2695)
T ss_dssp ---SCTTTCTTCCCCHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHH-----------------HHHHHHHTTTCCS
T ss_pred ---cCCccCCCcccCHHHHHHHHHHHHhcCchhhhccHHHHHHHHH-----------------HHHHHHHHHhcCC
No 378
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.65 E-value=0.097 Score=49.81 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.2
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..+|+|.|+.|+||||+++.+...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998764
No 379
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.60 E-value=0.084 Score=50.95 Aligned_cols=22 Identities=41% Similarity=0.617 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
+|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 380
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.57 E-value=0.11 Score=51.45 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
...+|+|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999888765
No 381
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.55 E-value=0.11 Score=49.75 Aligned_cols=37 Identities=19% Similarity=0.140 Sum_probs=27.0
Q ss_pred HHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 183 KNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 183 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
+..+..++..- +..+.+.|+|++|+||||+|..+++.
T Consensus 45 ~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 55566666421 22346899999999999999888875
No 382
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.54 E-value=0.12 Score=47.93 Aligned_cols=24 Identities=33% Similarity=0.328 Sum_probs=21.3
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
-.+++|+|+.|.|||||++.+..-
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 359999999999999999998764
No 383
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.48 E-value=0.094 Score=51.32 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|+|||||++.+..-
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 48999999999999999998764
No 384
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.43 E-value=0.18 Score=44.83 Aligned_cols=54 Identities=19% Similarity=0.182 Sum_probs=37.2
Q ss_pred EEEecCCCCC--CcchhhccCCceeEEEeCCcccccccccccc-ccCCCCCCeeeecccCCc
Q 043039 568 SLLIQGYSLQ--HMPSFFDQLTCLRALRIGKYGDDAIERIPNG-IEKLIHLRYLKLFFVGIE 626 (949)
Q Consensus 568 ~L~l~~~~l~--~l~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~-i~~l~~L~~L~L~~~~i~ 626 (949)
.++.+++.++ .+|..+. .+|+.|+|++|. +..+|.. +..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~---l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNN---LTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSC---CSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCc---CCccChhhhhhccccCEEEecCCCee
Confidence 5666777776 6665332 257888888887 7777653 667888888888887653
No 385
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.38 E-value=0.086 Score=52.17 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..|.|.|++|+||||+|+.+...
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999764
No 386
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.38 E-value=0.11 Score=52.38 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHc
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYN 223 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~ 223 (949)
..+|+|.|+.|+|||||++.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998866
No 387
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.33 E-value=0.95 Score=52.01 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|.|||||++.+..-
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998753
No 388
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.32 E-value=0.095 Score=51.55 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..+|+|.|+.|+||||+|+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999874
No 389
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.23 E-value=0.1 Score=52.92 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHHc
Q 043039 202 QVISLVGMGGIGKTTLAQLAYN 223 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~ 223 (949)
.+|+|+|+.|+||||+++.+..
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999985
No 390
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.19 E-value=0.1 Score=54.35 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.2
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..+++|+|+.|+||||+++.+..-
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 459999999999999999988764
No 391
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.17 E-value=0.62 Score=50.55 Aligned_cols=108 Identities=13% Similarity=0.035 Sum_probs=56.4
Q ss_pred CCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCC---CCCCcchHHHHHHHH
Q 043039 198 PNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGY---TPDLGELNTLHQLIN 274 (949)
Q Consensus 198 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~---~~~~~~~~~~~~~l~ 274 (949)
....++..|.|.+|.||||+.++..+. ...+-++.. .+...++-+.+... .............+.
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~~-------~~~lVlTpT-----~~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~ 225 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVNF-------EEDLILVPG-----RQAAEMIRRRANASGIIVATKDNVRTVDSFLM 225 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCCT-------TTCEEEESC-----HHHHHHHHHHHTTTSCCCCCTTTEEEHHHHHH
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhcc-------CCeEEEeCC-----HHHHHHHHHHhhhcCccccccceEEEeHHhhc
Confidence 456789999999999999999988762 111222221 12224444444321 111222333333343
Q ss_pred hhhCCc---eEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccchh
Q 043039 275 NRIGGK---KVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKET 321 (949)
Q Consensus 275 ~~l~~~---~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 321 (949)
+.-..+ -=++|+|++.-.+...+..+.... . ..++|+.--..+
T Consensus 226 ~~~~~~~~~~d~liiDE~sm~~~~~l~~l~~~~---~-~~~vilvGD~~Q 271 (446)
T 3vkw_A 226 NYGKGARCQFKRLFIDEGLMLHTGCVNFLVEMS---L-CDIAYVYGDTQQ 271 (446)
T ss_dssp TTTSSCCCCCSEEEEETGGGSCHHHHHHHHHHT---T-CSEEEEEECTTS
T ss_pred CCCCCCCCcCCEEEEeCcccCCHHHHHHHHHhC---C-CCEEEEecCccc
Confidence 332211 238999999654433343333322 2 267777755443
No 392
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.17 E-value=0.9 Score=50.01 Aligned_cols=50 Identities=14% Similarity=0.086 Sum_probs=33.5
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHh
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIEN 255 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 255 (949)
.++.|.|.+|+||||+|.++..+.-.. -..++|++... +..++...++..
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~~~ 247 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLIVT 247 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHHHH
Confidence 589999999999999998887653222 23577777654 333444444443
No 393
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.16 E-value=0.1 Score=51.20 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..+|+|.|+.|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999998764
No 394
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.15 E-value=0.1 Score=51.92 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..|.|.|++|+||||+|+.+...
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999863
No 395
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.14 E-value=0.1 Score=51.49 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=21.3
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
-.+++|+|+.|+|||||++.+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999998764
No 396
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.14 E-value=0.16 Score=50.72 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|+|||||++.+..-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 48999999999999999999863
No 397
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.13 E-value=0.76 Score=48.53 Aligned_cols=55 Identities=16% Similarity=0.013 Sum_probs=34.9
Q ss_pred HHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccc-cccceEEEEEeCCC
Q 043039 182 EKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVS-NNFNVMIWVCVSDP 242 (949)
Q Consensus 182 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~ 242 (949)
.--++++.|..-. .-..++|+|.+|+|||+|+..+.+..... ..+. ++++-+.+.
T Consensus 161 tGiraID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 161 YSTRLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred ccchhhhhccccc-----CCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 3446777775433 23467999999999999999888752211 1233 345666654
No 398
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.11 E-value=0.23 Score=64.10 Aligned_cols=84 Identities=15% Similarity=0.142 Sum_probs=53.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCC-----CCcchHHHHHHHH
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTP-----DLGELNTLHQLIN 274 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 274 (949)
..+++.|+|++|+|||+||.++..... ..-..++|+++...++... ++.++.+.. .....+...+.++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 346899999999999999988876522 2334578888887776655 344442211 1112334444444
Q ss_pred hhhC-CceEEEEEeCCC
Q 043039 275 NRIG-GKKVLLVLDDVW 290 (949)
Q Consensus 275 ~~l~-~~~~LlVlDdv~ 290 (949)
+..+ .+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 4433 556799999983
No 399
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.08 E-value=0.09 Score=51.90 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|+|||||++.+...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 48999999999999999998764
No 400
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.07 E-value=0.1 Score=50.43 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998774
No 401
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.06 E-value=0.12 Score=50.68 Aligned_cols=24 Identities=33% Similarity=0.296 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..+|.|.|+.|+||||+|+.+...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998764
No 402
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.02 E-value=0.072 Score=52.44 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
+|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 403
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.00 E-value=0.08 Score=49.79 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
++++|+|..|+|||||++.+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988764
No 404
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.96 E-value=0.17 Score=50.01 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|+|||||.+.+..-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999863
No 405
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.94 E-value=0.24 Score=51.75 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
...+|+|+|..|+|||||++.+...
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999988763
No 406
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.94 E-value=0.11 Score=51.26 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=19.4
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998763
No 407
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.90 E-value=0.33 Score=53.21 Aligned_cols=96 Identities=16% Similarity=0.151 Sum_probs=54.5
Q ss_pred HHHHHHccCCCCCCCCeEEEEEEecCCChHHHHH-HHHHcCcccccccc-eEEEEEeCCCC-CHHHHHHHHHHhcC----
Q 043039 185 ALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLA-QLAYNDADVSNNFN-VMIWVCVSDPF-DVFRVWKAIIENLD---- 257 (949)
Q Consensus 185 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~---- 257 (949)
+.++.|..-. +-..++|.|.+|+|||+|| ..+.+.. .-+ .++++-+.+.. .+.++.+.+...=.
T Consensus 164 raID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rt 234 (515)
T 2r9v_A 164 KAIDSMIPIG-----RGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYT 234 (515)
T ss_dssp HHHHHHSCEE-----TTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGE
T ss_pred cccccccccc-----cCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCccee
Confidence 3556664332 2236799999999999996 5777752 234 34667776554 45666666655211
Q ss_pred ---CCCCCCcchHHH-----HHHHHhhh--CCceEEEEEeCC
Q 043039 258 ---GYTPDLGELNTL-----HQLINNRI--GGKKVLLVLDDV 289 (949)
Q Consensus 258 ---~~~~~~~~~~~~-----~~~l~~~l--~~~~~LlVlDdv 289 (949)
....+....... .-.+-+++ +++.+||++||+
T Consensus 235 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 235 TVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 011111111111 11223333 589999999998
No 408
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.89 E-value=0.17 Score=50.62 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|.|||||.+.+..-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999763
No 409
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.84 E-value=0.18 Score=49.85 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=29.3
Q ss_pred chhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 179 RNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 179 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.++..+.+.+.+.. ...++|+|+|.+|+|||||+..+...
T Consensus 14 ~~~~~~~~~~~~~~------~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 14 NKRLAEKNREALRE------SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHH------HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcc------cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 34455555555532 24679999999999999999888764
No 410
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.79 E-value=0.56 Score=51.87 Aligned_cols=51 Identities=10% Similarity=-0.001 Sum_probs=35.2
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHh
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIEN 255 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 255 (949)
.++.|.|.+|+||||+|..+..+.... .-..++|++... +..++...++..
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~--~~~~l~~R~~~~ 251 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEM--PAAQLTLRMMCS 251 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCC--CHHHHHHHHHHH
Confidence 588999999999999998887652211 123578877763 455666666544
No 411
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.78 E-value=0.31 Score=47.09 Aligned_cols=110 Identities=15% Similarity=0.074 Sum_probs=51.2
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCC--CcchHHHHHHHHhhhC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPD--LGELNTLHQLINNRIG 278 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~ 278 (949)
-.+..++|..|.||||.+.......... .....+ +..... .+.-...+++.++..... ..+.. .+.+...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~-g~kVli-~k~~~d--~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~~ 99 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFA-KQHAIV-FKPCID--NRYSEEDVVSHNGLKVKAVPVSASK----DIFKHIT 99 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT-TCCEEE-EECC-------------------CCEEECSSGG----GGGGGCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEE-EEeccC--CcchHHHHHhhcCCeeEEeecCCHH----HHHHHHh
Confidence 4688999999999999996665542222 223333 332211 111112344444322110 11111 2222333
Q ss_pred CceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccchh
Q 043039 279 GKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKET 321 (949)
Q Consensus 279 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 321 (949)
++--+|++|.+.--+.+.++.+.. +.+ .|..||+|.++.+
T Consensus 100 ~~~dvViIDEaQF~~~~~V~~l~~-l~~--~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFDGDIVEVVQV-LAN--RGYRVIVAGLDQD 139 (214)
T ss_dssp SSCCEEEECCGGGSCTTHHHHHHH-HHH--TTCEEEEEECSBC
T ss_pred cCCCEEEEECcccCCHHHHHHHHH-Hhh--CCCEEEEEecccc
Confidence 333499999996543344433333 322 3678999998644
No 412
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.72 E-value=0.12 Score=51.03 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.4
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998763
No 413
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.71 E-value=0.12 Score=50.40 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+|+|.|+.|+||||+++.+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
No 414
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.70 E-value=0.18 Score=51.53 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.2
Q ss_pred EEEEEEecCCChHHHHHHHHHc
Q 043039 202 QVISLVGMGGIGKTTLAQLAYN 223 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~ 223 (949)
.+++|+|+.|+|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 3899999999999999999875
No 415
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.61 E-value=0.14 Score=50.51 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.7
Q ss_pred eEEEEEEecCCChHHHHHHHHHc
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYN 223 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~ 223 (949)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999865
No 416
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.56 E-value=0.11 Score=49.79 Aligned_cols=22 Identities=41% Similarity=0.458 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
+++|+|+.|+|||||++.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999888764
No 417
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.56 E-value=0.19 Score=51.10 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|+|||||.+.+..-
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999763
No 418
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.54 E-value=0.07 Score=51.11 Aligned_cols=101 Identities=16% Similarity=0.107 Sum_probs=69.1
Q ss_pred CCChhhhhhhcccCCCCCCeEEEEec-CCCCcchhhhcHHHHhhcCCCCCCcCceEEeccccCCC----CCchhhcccCC
Q 043039 728 VTDVDAAKNAELEKKKNLISLELEFD-KEEEEDEDEVNHQAIIEALRPHPNLESLQISFYEVKAR----FPNWILSLNKL 802 (949)
Q Consensus 728 l~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~----~p~~~~~l~~L 802 (949)
-+.........+..-+.|++|+|+++ .+.+ .+...+.+.+..-+.|+.|+|++|.+... +-..+..-+.|
T Consensus 26 ~t~v~~~l~~ll~~n~~L~~L~L~~nn~igd-----~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL 100 (197)
T 1pgv_A 26 DTDVESCINRLREDDTDLKEVNINNMKRVSK-----ERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSL 100 (197)
T ss_dssp -CCHHHHHHHHHTTCSSCCEEECTTCCSSCH-----HHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSC
T ss_pred CCCHHHHHHHHHhcCCCccEEECCCCCCCCH-----HHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCcc
Confidence 34555555566778889999999875 5543 24556778888889999999999987642 22333356789
Q ss_pred cEEEEeccCCCCCC-----CCCCCCCCcceeeecCC
Q 043039 803 RMLCLSFCKKCEIM-----PPLGKLQSLEVLDIWEM 833 (949)
Q Consensus 803 ~~L~L~~~~~~~~~-----~~l~~l~~L~~L~L~~~ 833 (949)
++|+|++|.+...- ..+..-..|++|+|+++
T Consensus 101 ~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 101 RVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 99999999865421 12444456888888654
No 419
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=90.53 E-value=0.21 Score=54.49 Aligned_cols=51 Identities=22% Similarity=0.292 Sum_probs=35.9
Q ss_pred CccccchhHHHHHHHHHccC--------CCCCCCCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 174 SEVCGRNEEKNALKGKLLSE--------TAEQPNAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..++|.++.++.+...+... ........+-|.++|++|+||||+|+.+...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 45889888888887766321 0001112345889999999999999999875
No 420
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.52 E-value=0.1 Score=51.67 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..|.|.|++|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998864
No 421
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.49 E-value=0.15 Score=59.11 Aligned_cols=43 Identities=23% Similarity=0.329 Sum_probs=36.2
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..++|.+..++.+...+... ..+.|+|++|+||||||+.+...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 45899999998888877542 37899999999999999999875
No 422
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.44 E-value=0.34 Score=53.15 Aligned_cols=95 Identities=19% Similarity=0.171 Sum_probs=54.2
Q ss_pred HHHHHccCCCCCCCCeEEEEEEecCCChHHHHH-HHHHcCcccccccc-eEEEEEeCCCC-CHHHHHHHHHHhcCCC---
Q 043039 186 LKGKLLSETAEQPNAIQVISLVGMGGIGKTTLA-QLAYNDADVSNNFN-VMIWVCVSDPF-DVFRVWKAIIENLDGY--- 259 (949)
Q Consensus 186 l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~--- 259 (949)
.++.|..-. +-..++|.|.+|+|||+|| ..+.+.. .-+ .++++-+.+.. .+.++.+.+.+.=...
T Consensus 152 aID~l~Pig-----rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tv 222 (502)
T 2qe7_A 152 AIDSMIPIG-----RGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTI 222 (502)
T ss_dssp HHHHSSCCB-----TTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEE
T ss_pred ecccccccc-----cCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeE
Confidence 556665332 2246789999999999996 5777752 234 34667776654 4566666665531111
Q ss_pred ----CCCCcchHHH-----HHHHHhhh--CCceEEEEEeCC
Q 043039 260 ----TPDLGELNTL-----HQLINNRI--GGKKVLLVLDDV 289 (949)
Q Consensus 260 ----~~~~~~~~~~-----~~~l~~~l--~~~~~LlVlDdv 289 (949)
..+....... .-.+-+++ +++.+||++||+
T Consensus 223 vV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 223 VVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 1111111111 11223333 589999999998
No 423
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=90.38 E-value=0.18 Score=54.65 Aligned_cols=99 Identities=11% Similarity=0.113 Sum_probs=55.3
Q ss_pred HHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccc--------cccc-eEEEEEeCCC-CCHHHHHHHHHHh
Q 043039 186 LKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVS--------NNFN-VMIWVCVSDP-FDVFRVWKAIIEN 255 (949)
Q Consensus 186 l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--------~~f~-~~~wv~~~~~-~~~~~~~~~i~~~ 255 (949)
.++.|..-. +-..++|.|.+|+|||+|+..+.+..... .+-+ .++++-+.+. ..+.++.+++.+.
T Consensus 137 aID~l~pig-----rGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~ 211 (464)
T 3gqb_B 137 TIDVMNTLV-----RGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERT 211 (464)
T ss_dssp HHHTTSCCB-----TTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHT
T ss_pred eeecccccc-----cCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhc
Confidence 555554332 22356899999999999999988764331 1111 5666666644 4556666665542
Q ss_pred --cC-----CCCCCCcchHH-----HHHHHHhhh---CCceEEEEEeCC
Q 043039 256 --LD-----GYTPDLGELNT-----LHQLINNRI---GGKKVLLVLDDV 289 (949)
Q Consensus 256 --l~-----~~~~~~~~~~~-----~~~~l~~~l---~~~~~LlVlDdv 289 (949)
+. ....+...... ..-.+.+++ +++.+|+++||+
T Consensus 212 g~~~rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 212 GALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp SGGGGEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred ccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 11 00111111111 111233444 378999999998
No 424
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.38 E-value=0.21 Score=56.82 Aligned_cols=114 Identities=14% Similarity=0.051 Sum_probs=57.6
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCC---------------CCCCcch
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGY---------------TPDLGEL 266 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~---------------~~~~~~~ 266 (949)
.+++|.|..|+|||||++.++...... -..++++...+. ...+...+ ..++.. .+..-..
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~--G~~vi~~~~ee~--~~~l~~~~-~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENACAN--KERAILFAYEES--RAQLLRNA-YSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEESSSC--HHHHHHHH-HTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhC--CCCEEEEEEeCC--HHHHHHHH-HHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 589999999999999999987642221 123455554332 22332222 122111 0111122
Q ss_pred HHHHH-HHHhhhCCceEEEEEeCCCCCCcc-----cHHHHHHhhhc-cCCCcEEEEEccch
Q 043039 267 NTLHQ-LINNRIGGKKVLLVLDDVWTEDGN-----KWESFQRCLIN-AHRGSKILVTTRKE 320 (949)
Q Consensus 267 ~~~~~-~l~~~l~~~~~LlVlDdv~~~~~~-----~~~~l~~~l~~-~~~gs~iivTtr~~ 320 (949)
.+.+. .+...+..++-++|+|-+...+.. ....+...+.. ...|..||+||.+.
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 33333 344455667779999944221211 22222222221 13466788888764
No 425
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.35 E-value=0.23 Score=53.74 Aligned_cols=85 Identities=12% Similarity=0.169 Sum_probs=50.5
Q ss_pred EEEEEecCCChHHHHHHHHHcCcccccccc----eEEEEEeCCC-CCHHHHHHHHHHh--cCC-----CCCCCcchHH--
Q 043039 203 VISLVGMGGIGKTTLAQLAYNDADVSNNFN----VMIWVCVSDP-FDVFRVWKAIIEN--LDG-----YTPDLGELNT-- 268 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~----~~~wv~~~~~-~~~~~~~~~i~~~--l~~-----~~~~~~~~~~-- 268 (949)
.++|.|..|+|||+|+.++.+.... +.+ .++++-+.+. ..+.++++++.+. +.. ...+......
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~ 230 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIA 230 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHH
Confidence 4689999999999999999886433 222 5666666644 4566666666543 110 0111111111
Q ss_pred ---HHHHHHhhh---CCceEEEEEeCC
Q 043039 269 ---LHQLINNRI---GGKKVLLVLDDV 289 (949)
Q Consensus 269 ---~~~~l~~~l---~~~~~LlVlDdv 289 (949)
..-.+.+++ +++.+|+++||+
T Consensus 231 a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 231 TPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 111234444 378999999998
No 426
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.32 E-value=0.16 Score=52.89 Aligned_cols=25 Identities=36% Similarity=0.343 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
...+++|+|+.|+||||+++.+...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4579999999999999999988764
No 427
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.28 E-value=0.14 Score=53.65 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+|+|.|+.|+||||||..+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999998874
No 428
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=90.25 E-value=2.2 Score=46.07 Aligned_cols=133 Identities=14% Similarity=0.086 Sum_probs=68.3
Q ss_pred ccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHH
Q 043039 175 EVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIE 254 (949)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 254 (949)
.++|....+.++.+.+..-.. .... |.|.|..|+|||++|+.+...... .-...+-++++.-. ..-+-..+..
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~---~~~~-vli~Ge~GtGK~~lAr~ih~~s~r--~~~~fv~v~~~~~~-~~~~~~elfg 210 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISC---AECP-VLITGESGVGKEVVARLIHKLSDR--SKEPFVALNVASIP-RDIFEAELFG 210 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTT---CCSC-EEEECSTTSSHHHHHHHHHHHSTT--TTSCEEEEETTTSC-HHHHHHHHHC
T ss_pred hhhhccHHhhHHHHHHHHhcC---CCCC-eEEecCCCcCHHHHHHHHHHhcCC--CCCCeEEEecCCCC-HHHHHHHhcC
Confidence 467777777777776654321 2233 489999999999999998764211 11223344554321 1111122221
Q ss_pred hcCCCCCCCcchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccC-----------CCcEEEEEccc
Q 043039 255 NLDGYTPDLGELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAH-----------RGSKILVTTRK 319 (949)
Q Consensus 255 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 319 (949)
.-.+........ ....+... + .=.|+||++..........+...+..+. ...|||.||..
T Consensus 211 ~~~g~~tga~~~--~~g~~~~a--~-~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~ 281 (387)
T 1ny5_A 211 YEKGAFTGAVSS--KEGFFELA--D-GGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNR 281 (387)
T ss_dssp BCTTSSTTCCSC--BCCHHHHT--T-TSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESS
T ss_pred CCCCCCCCcccc--cCCceeeC--C-CcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCC
Confidence 111111111000 00011111 1 1267899998777666667777665421 24578877764
No 429
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.22 E-value=0.17 Score=52.75 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.9
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.++|.|+|+.|+||||||..+...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999874
No 430
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.21 E-value=1.2 Score=50.11 Aligned_cols=53 Identities=11% Similarity=-0.019 Sum_probs=36.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhc
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENL 256 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 256 (949)
-.++.|.|.+|+||||+|.++..+.-.. +-..++|++... +..++...++...
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 3588999999999999998887652211 123578887755 4566666665543
No 431
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.12 E-value=0.12 Score=52.11 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+|+|+|+.|+||||+++.+...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 37999999999999999999873
No 432
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.12 E-value=0.14 Score=51.65 Aligned_cols=22 Identities=36% Similarity=0.395 Sum_probs=20.0
Q ss_pred EEEEEEecCCChHHHHHHHHHc
Q 043039 202 QVISLVGMGGIGKTTLAQLAYN 223 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~ 223 (949)
.+++|+|+.|+|||||++.+..
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 5899999999999999998873
No 433
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.09 E-value=0.22 Score=50.52 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|+|||||++.+..-
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 48999999999999999999763
No 434
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.07 E-value=0.19 Score=49.15 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|.|||||.+.+..-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 38899999999999999999764
No 435
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.03 E-value=0.14 Score=48.31 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.++++|+|..|+|||||+..+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 468999999999999999988764
No 436
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.01 E-value=0.32 Score=51.62 Aligned_cols=25 Identities=36% Similarity=0.343 Sum_probs=22.3
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
...+++|+|+.|+||||+++.+...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4579999999999999999988764
No 437
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.00 E-value=0.23 Score=49.76 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|.|||||.+.+..-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999764
No 438
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.97 E-value=0.15 Score=49.85 Aligned_cols=22 Identities=18% Similarity=0.372 Sum_probs=20.3
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
+|+|.|+.|+||||+|+.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999998763
No 439
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.97 E-value=0.22 Score=50.69 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|.|||||++.+..-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 48999999999999999999863
No 440
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.95 E-value=0.15 Score=49.57 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
+|.|.|++|+||||.|+.+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999874
No 441
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.93 E-value=0.23 Score=50.16 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|+|||||.+.+..-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999763
No 442
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.93 E-value=0.3 Score=52.26 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=27.3
Q ss_pred HHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 183 KNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 183 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..++.+.+... .....+|+|+|.+|+|||||+..+...
T Consensus 65 ~~~~~~~~~~~----~~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 65 AQQLLLRLLPD----SGNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHGGG----CCCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhHhh----cCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 44445555332 235689999999999999999887653
No 443
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.89 E-value=0.23 Score=50.31 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|+|||||.+.+..-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999763
No 444
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=89.89 E-value=0.4 Score=46.22 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=19.3
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.|+|=|..|+||||.++.+.+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~ 23 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3678899999999999998875
No 445
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.86 E-value=0.11 Score=51.83 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=15.9
Q ss_pred EEEEEEecCCChHHHHHHHHH-cC
Q 043039 202 QVISLVGMGGIGKTTLAQLAY-ND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~-~~ 224 (949)
.+++|+|+.|+|||||++.+. ..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 589999999999999999998 53
No 446
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.85 E-value=0.16 Score=49.99 Aligned_cols=22 Identities=36% Similarity=0.354 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998763
No 447
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.85 E-value=0.16 Score=50.12 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.3
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..|.|.|++|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999764
No 448
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.84 E-value=0.16 Score=50.22 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+|+|.|++|+||||+|+.+...
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999764
No 449
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.77 E-value=0.24 Score=50.60 Aligned_cols=23 Identities=48% Similarity=0.593 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|.|||||++.+..-
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999763
No 450
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.74 E-value=0.16 Score=50.41 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998763
No 451
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=89.73 E-value=0.48 Score=54.15 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.2
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
+++.|.|.+|+||||++..+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~ 227 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADL 227 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 48889999999999999888764
No 452
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.67 E-value=0.21 Score=50.79 Aligned_cols=26 Identities=35% Similarity=0.336 Sum_probs=22.3
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 199 NAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 199 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
....++.+.|.||+||||++..+...
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 45688999999999999999988753
No 453
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.66 E-value=0.17 Score=52.70 Aligned_cols=23 Identities=35% Similarity=0.356 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
++|.|+|+.|+||||||+.+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 454
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=89.63 E-value=0.31 Score=53.47 Aligned_cols=84 Identities=18% Similarity=0.222 Sum_probs=47.8
Q ss_pred EEEEEEecCCChHHHHH-HHHHcCcccccccc-eEEEEEeCCCC-CHHHHHHHHHHhc--C------CCCCCC--cch--
Q 043039 202 QVISLVGMGGIGKTTLA-QLAYNDADVSNNFN-VMIWVCVSDPF-DVFRVWKAIIENL--D------GYTPDL--GEL-- 266 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l--~------~~~~~~--~~~-- 266 (949)
..++|.|.+|+|||+|| ..+.+.. .-+ .++++-+.+.. .+.++.+.+...= . ....+. ...
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 239 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA 239 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHH
Confidence 45789999999999996 5777753 234 35667776654 4555555554320 0 011111 111
Q ss_pred HHHHHHHHhhh--CCceEEEEEeCC
Q 043039 267 NTLHQLINNRI--GGKKVLLVLDDV 289 (949)
Q Consensus 267 ~~~~~~l~~~l--~~~~~LlVlDdv 289 (949)
....-.+-+++ +++.+||++||+
T Consensus 240 ~~~a~tiAEyfrd~G~dVLli~Dsl 264 (507)
T 1fx0_A 240 PYTGAALAEYFMYRERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecH
Confidence 11111222333 589999999998
No 455
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.58 E-value=0.6 Score=51.79 Aligned_cols=49 Identities=10% Similarity=0.113 Sum_probs=33.4
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAII 253 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 253 (949)
.++.|.|.+|+||||+|..+....... .-..++|++... +..++...++
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHH
Confidence 489999999999999998887652221 123578887654 3445555544
No 456
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.57 E-value=0.19 Score=51.73 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.++|+|+|+.|+||||||..+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 358999999999999999999874
No 457
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.56 E-value=0.22 Score=46.49 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999764
No 458
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=89.50 E-value=0.28 Score=51.34 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=29.4
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCC
Q 043039 199 NAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFD 244 (949)
Q Consensus 199 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 244 (949)
...++|+|+|-||+||||+|..+...... .-..++-|+.....+
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~--~G~~VlliD~D~~~~ 82 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI--LGKRVLQIGCDPKHD 82 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEESSSCC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHH--CCCeEEEEeCCCCCC
Confidence 45689999999999999999777653211 122466666664443
No 459
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=89.49 E-value=1.1 Score=51.49 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|.|||||++.+..-
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhc
Confidence 48999999999999999998753
No 460
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=89.44 E-value=0.27 Score=53.60 Aligned_cols=99 Identities=11% Similarity=0.079 Sum_probs=56.2
Q ss_pred HHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccc--cceEEEEEeCCC-CCHHHHHHHHHHhcCC----
Q 043039 186 LKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNN--FNVMIWVCVSDP-FDVFRVWKAIIENLDG---- 258 (949)
Q Consensus 186 l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~-~~~~~~~~~i~~~l~~---- 258 (949)
.++.|..-. +-..++|.|.+|+|||+|+..+.++....+. -+.++++-+.+. ..+.++++++...=..
T Consensus 142 ~ID~l~pig-----rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtv 216 (469)
T 2c61_A 142 TIDGTNTLV-----RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAV 216 (469)
T ss_dssp HHHTTSCCB-----TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEE
T ss_pred eeeeeeccc-----cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceE
Confidence 566665432 2235678999999999999999876433211 135666666544 4566777776653110
Q ss_pred ---CCCCCcchH-----HHHHHHHhhh---CCceEEEEEeCC
Q 043039 259 ---YTPDLGELN-----TLHQLINNRI---GGKKVLLVLDDV 289 (949)
Q Consensus 259 ---~~~~~~~~~-----~~~~~l~~~l---~~~~~LlVlDdv 289 (949)
...+..... ...-.+.+++ +++.+|+++||+
T Consensus 217 vV~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 217 VFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 011111111 1111233444 378999999997
No 461
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.44 E-value=0.19 Score=50.09 Aligned_cols=26 Identities=23% Similarity=0.093 Sum_probs=22.6
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 199 NAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 199 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
....+|+|.|+.|+||||+++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34579999999999999999998773
No 462
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.38 E-value=0.26 Score=50.14 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|.|||||.+.+..-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999998763
No 463
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.31 E-value=0.17 Score=50.47 Aligned_cols=23 Identities=30% Similarity=0.265 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..|.|.|+.|+||||+|+.+...
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999874
No 464
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.30 E-value=0.24 Score=47.61 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.2
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.-.++|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998765
No 465
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.24 E-value=1.7 Score=49.87 Aligned_cols=125 Identities=14% Similarity=0.121 Sum_probs=63.4
Q ss_pred EEEEEEecCCChHHHHHHHHHcCccc-ccc-c--ceEEEEEeC--C--CCCHHH--------------HHHHHHHhcCCC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADV-SNN-F--NVMIWVCVS--D--PFDVFR--------------VWKAIIENLDGY 259 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~-f--~~~~wv~~~--~--~~~~~~--------------~~~~i~~~l~~~ 259 (949)
.+++|+|+.|+|||||++.+..-... .+. . ..+.++.-. . ..++.+ ...++++.++..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 47999999999999999999864221 111 0 012222111 0 011222 222333333322
Q ss_pred CC-----CCcchHHHH-HHHHhhhCCceEEEEEeCCCC-CCcccHHHHHHhhhcc--CCCcEEEEEccchhhHhhh
Q 043039 260 TP-----DLGELNTLH-QLINNRIGGKKVLLVLDDVWT-EDGNKWESFQRCLINA--HRGSKILVTTRKETVARMI 326 (949)
Q Consensus 260 ~~-----~~~~~~~~~-~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~~ 326 (949)
.. ..-.-.+.+ -.+.+.|-.++=+++||.--. .|...-..+...+... ..|..||++|.+...+..+
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~ 534 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYL 534 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 11 111122222 245566777788999998633 2222233344444332 2356688888886665543
No 466
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.17 E-value=0.14 Score=49.89 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
+++|+|+.|.|||||++.+..-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 8999999999999999988753
No 467
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.17 E-value=0.23 Score=51.10 Aligned_cols=25 Identities=32% Similarity=0.202 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..++|.|+|+.|+||||||..+...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 3578999999999999999999874
No 468
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.12 E-value=0.17 Score=48.19 Aligned_cols=22 Identities=41% Similarity=0.487 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998874
No 469
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.07 E-value=0.78 Score=44.75 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
...|.|.|+.|+||||+++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999998775
No 470
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.04 E-value=0.29 Score=50.15 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|.|||||.+.+..-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 38999999999999999999874
No 471
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.02 E-value=0.5 Score=61.04 Aligned_cols=84 Identities=15% Similarity=0.147 Sum_probs=55.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCC-----CCcchHHHHHHHHh
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTP-----DLGELNTLHQLINN 275 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 275 (949)
-+++.|+|.+|+||||||.++..... ..-..++|++.....+... ++.++.... +..+.+++.+.+++
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~~ 455 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 455 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHHH
Confidence 35999999999999999988876532 2224688998888776542 455554321 12345555555554
Q ss_pred hhC-CceEEEEEeCCCC
Q 043039 276 RIG-GKKVLLVLDDVWT 291 (949)
Q Consensus 276 ~l~-~~~~LlVlDdv~~ 291 (949)
..+ .+.-+||+|.+..
T Consensus 456 lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 456 LARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHTCCSEEEESCGGG
T ss_pred HHHhcCCcEEEECCHHH
Confidence 332 4556999999853
No 472
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.95 E-value=0.3 Score=46.60 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999874
No 473
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.95 E-value=0.2 Score=52.31 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHHc
Q 043039 202 QVISLVGMGGIGKTTLAQLAYN 223 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~ 223 (949)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999886
No 474
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=88.94 E-value=0.12 Score=49.65 Aligned_cols=108 Identities=11% Similarity=0.116 Sum_probs=52.2
Q ss_pred eEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEe-CCCCCHHHHHHHHHHhcCCCCC--CCcchHHHHHHHHhhh
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCV-SDPFDVFRVWKAIIENLDGYTP--DLGELNTLHQLINNRI 277 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l 277 (949)
-++..++|..|.||||.+..+.+....+ .+...++-.. ...+. ...+...++...+ ...+.. .+.+.+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~-g~kV~v~k~~~d~r~~----~~~i~s~~g~~~~a~~~~~~~----~i~~~~ 78 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIA-KQKIQVFKPEIDNRYS----KEDVVSHMGEKEQAVAIKNSR----EILKYF 78 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEEC-----------CEEECTTSCEEECEEESSST----HHHHHC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEeccCccch----HHHHHhhcCCceeeEeeCCHH----HHHHHH
Confidence 4699999999999999997766543222 2233332211 11111 1112222221100 001111 223333
Q ss_pred CCceEEEEEeCCCCCCcccHHHHHHhhhccCCCcEEEEEccch
Q 043039 278 GGKKVLLVLDDVWTEDGNKWESFQRCLINAHRGSKILVTTRKE 320 (949)
Q Consensus 278 ~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 320 (949)
.++-=+|++|.+.--+.+..+.+... .+ .|..||+|.++.
T Consensus 79 ~~~~dvViIDEaqfl~~~~v~~l~~l-~~--~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 79 EEDTEVIAIDEVQFFDDEIVEIVNKI-AE--SGRRVICAGLDM 118 (191)
T ss_dssp CTTCSEEEECSGGGSCTHHHHHHHHH-HH--TTCEEEEEECSB
T ss_pred hccCCEEEEECCCCCCHHHHHHHHHH-Hh--CCCEEEEEeccc
Confidence 33333999999854433334444332 22 267899998854
No 475
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.92 E-value=0.23 Score=45.84 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.2
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
+.|+|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 476
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.87 E-value=0.19 Score=55.15 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=22.8
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 199 NAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 199 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
....+|.|+|++|+||||+|+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34679999999999999999998874
No 477
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.67 E-value=0.22 Score=50.26 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|.|||||++.+..-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999999873
No 478
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=88.63 E-value=0.34 Score=52.04 Aligned_cols=160 Identities=16% Similarity=0.124 Sum_probs=80.8
Q ss_pred CccccchhHHHHHHHHHccCCCCCCCCeEEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 043039 174 SEVCGRNEEKNALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAII 253 (949)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 253 (949)
..++|....+.++...+..-.. ... .+.|.|.+|+||+++|+.+.......+. .+-++++.-.. ..+...+.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~---~~~-~vli~GesGtGKe~lAr~ih~~s~r~~~---fv~vnc~~~~~-~~~~~~lf 200 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK---SKA-PVLITGESGTGKEIVARLIHRYSGRKGA---FVDLNCASIPQ-ELAESELF 200 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT---SCS-CEEEECCTTSSHHHHHHHHHHHHCCCSC---EEEEESSSSCT-TTHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc---cch-hheEEeCCCchHHHHHHHHHHhccccCC---cEEEEcccCCh-HHHHHHhc
Confidence 3578887777766665533221 112 3668999999999999999875322222 33344443211 11111121
Q ss_pred HhcCCCCCCC-cchHHHHHHHHhhhCCceEEEEEeCCCCCCcccHHHHHHhhhccC-----------CCcEEEEEccchh
Q 043039 254 ENLDGYTPDL-GELNTLHQLINNRIGGKKVLLVLDDVWTEDGNKWESFQRCLINAH-----------RGSKILVTTRKET 321 (949)
Q Consensus 254 ~~l~~~~~~~-~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~~~ 321 (949)
..-.+...+. .+.. ..+... .+ --|+||++.+........+...+..+. -..|||.+|...-
T Consensus 201 g~~~g~~tga~~~~~---g~~~~a-~~--gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l 274 (368)
T 3dzd_A 201 GHEKGAFTGALTRKK---GKLELA-DQ--GTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNL 274 (368)
T ss_dssp EECSCSSSSCCCCEE---CHHHHT-TT--SEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCH
T ss_pred CccccccCCcccccC---ChHhhc-CC--CeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCH
Confidence 1111111111 0000 011111 11 258999998877666777777775431 1346777666421
Q ss_pred hHhhh--c----------CcceEeCCCCCh--HhHHHHHHH
Q 043039 322 VARMI--G----------STCVISIEELSE--PECWSLFKR 348 (949)
Q Consensus 322 v~~~~--~----------~~~~~~l~~l~~--~~~~~l~~~ 348 (949)
...+ + ....+.+.+|.+ +|...|+.+
T Consensus 275 -~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~ 314 (368)
T 3dzd_A 275 -EEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEY 314 (368)
T ss_dssp -HHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHH
T ss_pred -HHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHH
Confidence 1111 1 122567888876 565554443
No 479
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.56 E-value=0.24 Score=47.12 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
+.|.|.|+.|+||||||..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999998764
No 480
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.53 E-value=0.21 Score=48.38 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.0
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999998765
No 481
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=88.53 E-value=0.47 Score=52.14 Aligned_cols=100 Identities=18% Similarity=0.185 Sum_probs=55.4
Q ss_pred HHHHHHccCCCCCCCCeEEEEEEecCCChHHHHH-HHHHcCccc----ccccc-eEEEEEeCCCC-CHHHHHHHHHHhcC
Q 043039 185 ALKGKLLSETAEQPNAIQVISLVGMGGIGKTTLA-QLAYNDADV----SNNFN-VMIWVCVSDPF-DVFRVWKAIIENLD 257 (949)
Q Consensus 185 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~----~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~ 257 (949)
+.++.|..-. +-..++|.|.+|+|||+|| ..+.+.... ..+-+ .++++-+.+.. .+.++.+.+...=.
T Consensus 151 raID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~ 225 (510)
T 2ck3_A 151 KAVDSLVPIG-----RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADA 225 (510)
T ss_dssp HHHHHHSCCB-----TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTC
T ss_pred eeeccccccc-----cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCC
Confidence 3566665432 2236789999999999995 567665321 01233 46677777654 45666666655211
Q ss_pred -------CCCCCCcchHHH-----HHHHHhhh--CCceEEEEEeCC
Q 043039 258 -------GYTPDLGELNTL-----HQLINNRI--GGKKVLLVLDDV 289 (949)
Q Consensus 258 -------~~~~~~~~~~~~-----~~~l~~~l--~~~~~LlVlDdv 289 (949)
....+....... .-.+-+++ +++.+||++||+
T Consensus 226 m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 226 MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp GGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred cccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 011111111111 11223333 589999999998
No 482
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=88.49 E-value=0.83 Score=52.45 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|.|||||++.+..-
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 48999999999999999988653
No 483
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.44 E-value=1.9 Score=49.57 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.1
Q ss_pred EEEEEEecCCChHHHHHHHHHc
Q 043039 202 QVISLVGMGGIGKTTLAQLAYN 223 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~ 223 (949)
.+++|+|+.|.|||||++.+..
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999998865
No 484
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.39 E-value=0.23 Score=50.60 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|+|||||++.+..-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 485
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.35 E-value=0.26 Score=50.00 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.1
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
-.+++|+|+.|+|||||++.+...
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh
Confidence 359999999999999999988763
No 486
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.34 E-value=0.11 Score=53.69 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=18.3
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
..+|+|.|..|+||||+|+.+...
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999988763
No 487
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=88.32 E-value=1 Score=54.22 Aligned_cols=21 Identities=19% Similarity=0.099 Sum_probs=19.4
Q ss_pred eEEEEEEecCCChHHHHHHHH
Q 043039 201 IQVISLVGMGGIGKTTLAQLA 221 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v 221 (949)
-.+++|+|+.|.||||+.+.+
T Consensus 662 g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999988
No 488
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.31 E-value=0.4 Score=61.05 Aligned_cols=81 Identities=16% Similarity=0.202 Sum_probs=0.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCCCC-----cchHHHHHHHHhh
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTPDL-----GELNTLHQLINNR 276 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-----~~~~~~~~~l~~~ 276 (949)
+++.|.|.+|+||||||.++... ....-..++|++.....+... ++.++...... .+.+++.+.+...
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~~--~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~l 456 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 456 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHHH
Q ss_pred hC-CceEEEEEeCC
Q 043039 277 IG-GKKVLLVLDDV 289 (949)
Q Consensus 277 l~-~~~~LlVlDdv 289 (949)
.+ .+.-+||+|.+
T Consensus 457 v~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 457 ARSGAVDVIVVDSV 470 (1706)
T ss_dssp HHHTCCSEEEESCS
T ss_pred HHhcCCCEEEECCH
No 489
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.15 E-value=0.24 Score=45.82 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHHcC
Q 043039 203 VISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 203 vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 490
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.13 E-value=0.24 Score=51.17 Aligned_cols=23 Identities=17% Similarity=0.301 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|.|||||++.+..-
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhh
Confidence 48999999999999999998764
No 491
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.09 E-value=0.23 Score=49.86 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|.|||||.+.+..-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 38999999999999999999874
No 492
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.09 E-value=0.23 Score=50.35 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|.|||||++.+..-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 48999999999999999999764
No 493
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.08 E-value=0.31 Score=48.37 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
....|+|.|+.|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999875
No 494
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.97 E-value=0.28 Score=49.19 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcC
Q 043039 201 IQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 201 ~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
...|+|.|..|+||||+++.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999874
No 495
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=87.90 E-value=0.24 Score=49.92 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|+|||||.+.+..-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999999864
No 496
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=87.88 E-value=0.7 Score=53.30 Aligned_cols=23 Identities=43% Similarity=0.541 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHHcC
Q 043039 202 QVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
.+++|+|+.|.|||||++.+..-
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999998763
No 497
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=87.88 E-value=0.56 Score=45.77 Aligned_cols=105 Identities=17% Similarity=0.211 Sum_probs=54.5
Q ss_pred EEEEEEecCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCC----------CCcchHHHHH
Q 043039 202 QVISLVGMGGIGKTTLAQLAYNDADVSNNFNVMIWVCVSDPFDVFRVWKAIIENLDGYTP----------DLGELNTLHQ 271 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------~~~~~~~~~~ 271 (949)
-.|.+.|.||+||||+|..+....... .+ .+..+.+...-+... ..++..+..... ...+...
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~-G~-~V~v~d~D~q~~~~~--~al~~gl~~~~~~~~~~~~~~~~e~~l~~--- 79 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQ-GV-RVMAGVVETHGRAET--EALLNGLPQQPLLRTEYRGMTLEEMDLDA--- 79 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT-TC-CEEEEECCCTTCHHH--HHHHTTSCBCCCEEEEETTEEEEECCHHH---
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC-CC-CEEEEEeCCCCChhH--HHHhcCccccCcceeecCCcccccccHHH---
Confidence 347889999999999987776642222 22 344555554333322 112222221100 0112222
Q ss_pred HHHhhhCCceEEEEEeCCCCC------CcccHHHHHHhhhccCCCcEEEEEccch
Q 043039 272 LINNRIGGKKVLLVLDDVWTE------DGNKWESFQRCLINAHRGSKILVTTRKE 320 (949)
Q Consensus 272 ~l~~~l~~~~~LlVlDdv~~~------~~~~~~~l~~~l~~~~~gs~iivTtr~~ 320 (949)
.+. .+.=++|+|++-.. ....|..+...++ .|-.|+.|+.-+
T Consensus 80 ~L~----~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~---sgidVitT~Nlq 127 (228)
T 2r8r_A 80 LLK----AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA---AGIDVYTTVNVQ 127 (228)
T ss_dssp HHH----HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH---TTCEEEEEEEGG
T ss_pred HHh----cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc---CCCCEEEEcccc
Confidence 222 23459999987432 1124666655443 355688887754
No 498
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.83 E-value=0.25 Score=49.43 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.3
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHcC
Q 043039 199 NAIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 199 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
....+|+|.|+.|+||||+++.+...
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999998863
No 499
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=87.82 E-value=0.33 Score=46.07 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCChHHHHHHHHHcC
Q 043039 200 AIQVISLVGMGGIGKTTLAQLAYND 224 (949)
Q Consensus 200 ~~~vi~I~G~~GiGKTtLa~~v~~~ 224 (949)
....|+|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4467899999999999999998865
No 500
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=87.82 E-value=2.9 Score=49.64 Aligned_cols=21 Identities=38% Similarity=0.449 Sum_probs=17.3
Q ss_pred EEEEEEecCCChHHHHHHHHH
Q 043039 202 QVISLVGMGGIGKTTLAQLAY 222 (949)
Q Consensus 202 ~vi~I~G~~GiGKTtLa~~v~ 222 (949)
.++.|+|+.|.||||++..+.
T Consensus 110 ~~vii~gpTGSGKTtllp~ll 130 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFV 130 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 378999999999999765553
Done!