BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043041
(395 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 137 bits (346), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 107/331 (32%), Positives = 157/331 (47%), Gaps = 25/331 (7%)
Query: 3 LDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGEL 62
L LS N LSG +P +LR L L N G+IP + + ++ L L N LTGE+
Sbjct: 420 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 479
Query: 63 PSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQ 122
PS L NC+ L + L N L+GEIPKWIG L L +L L +N F G IP +L +
Sbjct: 480 PSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLI 538
Query: 123 ILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAG-GL--QLTTAGDFFSGQAV 179
LDL++N G IP F + ++ ++ + G+ + AG+ Q +
Sbjct: 539 WLDLNTNLFNGTIPAAM--FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 596
Query: 180 LTWKGSQYQYQNTL------------------GLVKMLDLSSNKLGGEVPEEIMDLVGLI 221
+ + ++ +N G + LD+S N L G +P+EI + L
Sbjct: 597 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLF 656
Query: 222 AMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPXXXXXXXXXXXXXXXYNNLSGK 281
+NL N+++G I ++G L+ L+ LDLS N+ G IP NNLSG
Sbjct: 657 ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 716
Query: 282 IPSGTQLQSFNASTYAGNE-LCGLPLPNKCP 311
IP Q ++F + + N LCG PLP P
Sbjct: 717 IPEMGQFETFPPAKFLNNPGLCGYPLPRCDP 747
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 137/305 (44%), Gaps = 30/305 (9%)
Query: 2 YLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGE 61
+LD+S N LSG L++L++++N F G IP L ++Q LSL N TGE
Sbjct: 224 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGE 281
Query: 62 LPSSLQN-CSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQ-LCYLP 119
+P L C L +DL N G +P + G L L+L SN F G +P L +
Sbjct: 282 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS-LLESLALSSNNFSGELPMDTLLKMR 340
Query: 120 FIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAV 179
+++LDLS N G +P+ N +A L L + + FSG +
Sbjct: 341 GLKVLDLSFNEFSGELPESLTNLSASL------------------LTLDLSSNNFSGPIL 382
Query: 180 LTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIG 239
QN ++ L L +N G++P + + L++++LS N L+G I +G
Sbjct: 383 PNL------CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 436
Query: 240 QLKSLDFLDLSRNRFFGGIPXXXXXXXXXXXXXXXYNNLSGKIPSG-TQLQSFNASTYAG 298
L L L L N G IP +N+L+G+IPSG + + N + +
Sbjct: 437 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 496
Query: 299 NELCG 303
N L G
Sbjct: 497 NRLTG 501
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 128/287 (44%), Gaps = 36/287 (12%)
Query: 2 YLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGE 61
+L +S N +SG + + L LD+++NNFS IP +G +Q L + N L+G+
Sbjct: 179 HLAISGNKISGDVDVSRCV--NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGD 235
Query: 62 LPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIP-FQLCYLPF 120
++ C+ L L+++ N G IP L L LSL NKF G IP F
Sbjct: 236 FSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDT 292
Query: 121 IQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVL 180
+ LDLS N+ G +P F S F+G L + T +L
Sbjct: 293 LTGLDLSGNHFYGAVPPFF------GSCSLLESLALSSNNFSGELPMDT---------LL 337
Query: 181 TWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDL-VGLIAMNLSRNNLTGQITPKIG 239
+G +K+LDLS N+ GE+PE + +L L+ ++LS NN +G I P +
Sbjct: 338 KMRG-----------LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 386
Query: 240 Q--LKSLDFLDLSRNRFFGGIPXXXXXXXXXXXXXXXYNNLSGKIPS 284
Q +L L L N F G IP +N LSG IPS
Sbjct: 387 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 433
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 54/88 (61%)
Query: 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTG 60
M+LD+S N+LSG +P L IL+L +N+ SG IPD +G L + IL L +N L G
Sbjct: 632 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 691
Query: 61 ELPSSLQNCSLLILMDLGRNALSGEIPK 88
+P ++ ++L +DL N LSG IP+
Sbjct: 692 RIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 111/262 (42%), Gaps = 29/262 (11%)
Query: 53 LHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIG-ESLPKLIVLSLMSN--KFHG 109
L N+ + G + S + + L +DL RN+LSG + S L L++ SN F G
Sbjct: 81 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 110 IIPFQLCYLPFIQILDLSSNNIPG------IIPKCFNNFTAMAQEKSSV-------LSVT 156
+ L L +++LDLS+N+I G ++ +A + + V
Sbjct: 140 KVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN 198
Query: 157 SEYWFAGGLQLTTAGDFFSGQAVLTW--------KGSQYQYQNTLGLVKMLDLSSNKLGG 208
E+ +T F + L G + +T +K+L++SSN+ G
Sbjct: 199 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 258
Query: 209 EVPEEIMDLVGLIAMNLSRNNLTGQITPKI-GQLKSLDFLDLSRNRFFGGIPXXXXXXXX 267
+P + L L ++L+ N TG+I + G +L LDLS N F+G +P
Sbjct: 259 PIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 316
Query: 268 XXXXXXXYNNLSGKIPSGTQLQ 289
NN SG++P T L+
Sbjct: 317 LESLALSSNNFSGELPMDTLLK 338
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 137 bits (345), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 106/333 (31%), Positives = 156/333 (46%), Gaps = 25/333 (7%)
Query: 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTG 60
+ L LS N LSG +P +LR L L N G+IP + + ++ L L N LTG
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480
Query: 61 ELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPF 120
E+PS L NC+ L + L N L+GEIPKWIG L L +L L +N F G IP +L
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRS 539
Query: 121 IQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGG---LQLTTAGDFFSGQ 177
+ LDL++N G IP F + ++ ++ + + AG+ Q
Sbjct: 540 LIWLDLNTNLFNGTIPAAM--FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597
Query: 178 AVLTWKGSQYQYQNTL------------------GLVKMLDLSSNKLGGEVPEEIMDLVG 219
+ + + ++ +N G + LD+S N L G +P+EI +
Sbjct: 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657
Query: 220 LIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPXXXXXXXXXXXXXXXYNNLS 279
L +NL N+++G I ++G L+ L+ LDLS N+ G IP NNLS
Sbjct: 658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717
Query: 280 GKIPSGTQLQSFNASTYAGNE-LCGLPLPNKCP 311
G IP Q ++F + + N LCG PLP P
Sbjct: 718 GPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDP 750
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 137/305 (44%), Gaps = 30/305 (9%)
Query: 2 YLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGE 61
+LD+S N LSG L++L++++N F G IP L ++Q LSL N TGE
Sbjct: 227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGE 284
Query: 62 LPSSLQN-CSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQ-LCYLP 119
+P L C L +DL N G +P + G L L+L SN F G +P L +
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS-LLESLALSSNNFSGELPMDTLLKMR 343
Query: 120 FIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAV 179
+++LDLS N G +P+ N +A L L + + FSG +
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASL------------------LTLDLSSNNFSGPIL 385
Query: 180 LTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIG 239
QN ++ L L +N G++P + + L++++LS N L+G I +G
Sbjct: 386 PNL------CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439
Query: 240 QLKSLDFLDLSRNRFFGGIPXXXXXXXXXXXXXXXYNNLSGKIPSG-TQLQSFNASTYAG 298
L L L L N G IP +N+L+G+IPSG + + N + +
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499
Query: 299 NELCG 303
N L G
Sbjct: 500 NRLTG 504
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 128/287 (44%), Gaps = 36/287 (12%)
Query: 2 YLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGE 61
+L +S N +SG + + L LD+++NNFS IP +G +Q L + N L+G+
Sbjct: 182 HLAISGNKISGDVDVSRCV--NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGD 238
Query: 62 LPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIP-FQLCYLPF 120
++ C+ L L+++ N G IP L L LSL NKF G IP F
Sbjct: 239 FSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDT 295
Query: 121 IQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVL 180
+ LDLS N+ G +P F S F+G L + T +L
Sbjct: 296 LTGLDLSGNHFYGAVPPFF------GSCSLLESLALSSNNFSGELPMDT---------LL 340
Query: 181 TWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDL-VGLIAMNLSRNNLTGQITPKIG 239
+G +K+LDLS N+ GE+PE + +L L+ ++LS NN +G I P +
Sbjct: 341 KMRG-----------LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389
Query: 240 Q--LKSLDFLDLSRNRFFGGIPXXXXXXXXXXXXXXXYNNLSGKIPS 284
Q +L L L N F G IP +N LSG IPS
Sbjct: 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 111/262 (42%), Gaps = 29/262 (11%)
Query: 53 LHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIG-ESLPKLIVLSLMSN--KFHG 109
L N+ + G + S + + L +DL RN+LSG + S L L++ SN F G
Sbjct: 84 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 110 IIPFQLCYLPFIQILDLSSNNIPG------IIPKCFNNFTAMAQEKSSV-------LSVT 156
+ L L +++LDLS+N+I G ++ +A + + V
Sbjct: 143 KVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN 201
Query: 157 SEYWFAGGLQLTTAGDFFSGQAVLTW--------KGSQYQYQNTLGLVKMLDLSSNKLGG 208
E+ +T F + L G + +T +K+L++SSN+ G
Sbjct: 202 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261
Query: 209 EVPEEIMDLVGLIAMNLSRNNLTGQITPKI-GQLKSLDFLDLSRNRFFGGIPXXXXXXXX 267
+P + L L ++L+ N TG+I + G +L LDLS N F+G +P
Sbjct: 262 PIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319
Query: 268 XXXXXXXYNNLSGKIPSGTQLQ 289
NN SG++P T L+
Sbjct: 320 LESLALSSNNFSGELPMDTLLK 341
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 127/289 (43%), Gaps = 33/289 (11%)
Query: 23 RLRILDLANNNFSGK--IPDSMGSLPNIQILSLHN-NSLTGELPSSLQNCSLLILMDLGR 79
R+ LDL+ N IP S+ +LP + L + N+L G +P ++ + L + +
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 80 NALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCF 139
+SG IP ++ + + L+ L N G +P + LP + + N I G IP +
Sbjct: 111 TNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169
Query: 140 NNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKML 199
+F+ + +T + + +G+ T+ + +
Sbjct: 170 GSFSKLFTS------------------MTISRNRLTGKIPPTFANLNLAF---------V 202
Query: 200 DLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIP 259
DLS N L G+ ++L++N+L + K+G K+L+ LDL NR +G +P
Sbjct: 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLP 261
Query: 260 XXXXXXXXXXXXXXXYNNLSGKIPSGTQLQSFNASTYAGNE-LCGLPLP 307
+NNL G+IP G LQ F+ S YA N+ LCG PLP
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 112/262 (42%), Gaps = 37/262 (14%)
Query: 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTG 60
+Y+ NNL+ G +P +L L + + N SG IPD + + + L N+L+G
Sbjct: 81 LYIGGINNLV-GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG 139
Query: 61 ELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPF 120
LP S+ + L+ + N +SG IP G +++ N+ G IP L
Sbjct: 140 TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-N 198
Query: 121 IQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVL 180
+ +DLS N M + +SVL G + Q +
Sbjct: 199 LAFVDLSRN---------------MLEGDASVL----------------FGSDKNTQKIH 227
Query: 181 TWKGSQYQYQNTLGLVKM---LDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPK 237
K S +GL K LDL +N++ G +P+ + L L ++N+S NNL G+I P+
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQ 286
Query: 238 IGQLKSLDFLDLSRNRFFGGIP 259
G L+ D + N+ G P
Sbjct: 287 GGNLQRFDVSAYANNKCLCGSP 308
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 99/237 (41%), Gaps = 22/237 (9%)
Query: 25 RILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSG 84
R+LDL N D S P+++ L L+ N ++ P + N L + L N L
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK- 93
Query: 85 EIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTA 144
IP + L L L + NK ++ + L ++ L++ N++ I + F+ +
Sbjct: 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153
Query: 145 MAQ---EKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKG------SQYQYQNTLGL 195
+ Q EK ++ S+ +E A G VL + Y ++ L
Sbjct: 154 LEQLTLEKCNLTSIPTE-----------ALSHLHGLIVLRLRHLNINAIRDYSFKR-LYR 201
Query: 196 VKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRN 252
+K+L++S + + + L +++++ NLT + L L FL+LS N
Sbjct: 202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 29 LANNNFSGKIPDS--MGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEI 86
L N+N G+I G LP++ L L N LTG P++ + S + + LG N + EI
Sbjct: 35 LLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EI 93
Query: 87 PKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSN 129
+ L +L L+L N+ ++P +L + L+L+SN
Sbjct: 94 SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 63 PSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQ 122
P QN LL ++ L RN LS +P+ I + PKL LS+ +N I +Q
Sbjct: 116 PHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174
Query: 123 ILDLSSNNIPGI----IPKCFN 140
L LSSN + + IP F+
Sbjct: 175 NLQLSSNRLTHVDLSLIPSLFH 196
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 84/212 (39%), Gaps = 30/212 (14%)
Query: 63 PSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQ 122
P QN LL ++ L RN LS +P+ I + PKL LS+ +N I +Q
Sbjct: 110 PHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168
Query: 123 ILDLSSNNIPGI----IPKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQA 178
L LSSN + + IP F+ + + + + E A + + G
Sbjct: 169 NLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASH----NSINVVRGPV 224
Query: 179 VLTWKGSQYQYQNTL---------GLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRN- 228
+ + Q+ N GLV++ DLS N+L + + + L + +S N
Sbjct: 225 NVELTILKLQHNNLTDTAWLLNYPGLVEV-DLSYNELEKIMYHPFVKMQRLERLYISNNR 283
Query: 229 ----NLTGQITPKIGQLKSLDFLDLSRNRFFG 256
NL GQ P +L LDLS N
Sbjct: 284 LVALNLYGQPIP------TLKVLDLSHNHLLH 309
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 10/101 (9%)
Query: 2 YLDLSNNLLSGRLPDCWPLFDRLRILDL--ANNNFSGKIPDSMGSLPNIQILSLHNNSLT 59
+LDLS+N L LP P LR L++ A++N + D + +LP +Q L L NN L
Sbjct: 467 HLDLSHNRLRA-LP---PALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNRLQ 521
Query: 60 GELP-SSLQNCSLLILMDLGRNALSGE--IPKWIGESLPKL 97
L +C L+L++L N+L E I + + E LP +
Sbjct: 522 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 10/101 (9%)
Query: 2 YLDLSNNLLSGRLPDCWPLFDRLRILDL--ANNNFSGKIPDSMGSLPNIQILSLHNNSLT 59
+LDLS+N L LP P LR L++ A++N + D + +LP +Q L L NN L
Sbjct: 467 HLDLSHNRLRA-LP---PALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNRLQ 521
Query: 60 GELP-SSLQNCSLLILMDLGRNALSGE--IPKWIGESLPKL 97
L +C L+L++L N+L E I + + E LP +
Sbjct: 522 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 3 LDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGEL 62
+ L N + P + + +LR +DL+NN S PD+ L ++ L L+ N +T EL
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-EL 95
Query: 63 PSSL 66
P SL
Sbjct: 96 PKSL 99
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 3 LDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGEL 62
+ L N + P + + +LR +DL+NN S PD+ L ++ L L+ N +T EL
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-EL 95
Query: 63 PSSL 66
P SL
Sbjct: 96 PKSL 99
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 81/227 (35%), Gaps = 33/227 (14%)
Query: 29 LANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPK 88
L N S S S N+ IL LH+N+L G ++ +LL +DL NA +
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 89 WIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFN---NFTAM 145
L L L L + P L +Q L L NN+ + F N T +
Sbjct: 98 TTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHL 157
Query: 146 AQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNK 205
+ + SV E+ F G L + L L N
Sbjct: 158 FLHGNRIPSV-PEHAFRG-----------------------------LHSLDRLLLHQNH 187
Query: 206 LGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRN 252
+ P DL L+ + L NNL+ + L+SL +L L+ N
Sbjct: 188 VARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 124/308 (40%), Gaps = 73/308 (23%)
Query: 2 YLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGE 61
+LDLS+ + + L++L+LA N + ++ L N+Q+L+L N L GE
Sbjct: 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGE 328
Query: 62 LPSS------------LQNCSLLIL-------------MDLGRNALSG-----EIPKWI- 90
L SS LQ + I+ +DL NAL+ IP
Sbjct: 329 LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFL 388
Query: 91 -GESLPKLIVLSLMSNKFH---------GIIPFQLCYLPFIQILDLSSNNIPGIIPKCFN 140
G L L ++L +N H I+ F L +P +QIL L+ N
Sbjct: 389 SGNKLVTLPKINLTANLIHLSENRLENLDILYF-LLRVPHLQILILNQ-----------N 436
Query: 141 NFTAMAQEKSSVLSVTSEYWFAGGLQLTTA------GDFFSGQAVLTWKGSQYQYQNT-- 192
F++ + +++ + + E F G L A D F G + L + Y N+
Sbjct: 437 RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLP 496
Query: 193 ------LGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDF 246
L ++ L L+SN+L ++ L +++SRN L + P SL
Sbjct: 497 PGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQL---LAPNPDVFVSLSV 551
Query: 247 LDLSRNRF 254
LD++ N+F
Sbjct: 552 LDITHNKF 559
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 24 LRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALS 83
LR LDL++N+ L +++L L+NN + ++ ++ + L + L +N +S
Sbjct: 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149
Query: 84 GEIPKWI--GESLPKLIVLSLMSNKFHGIIPFQLCYLP 119
+ I G LPKL++L L SNK + L LP
Sbjct: 150 RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 6/147 (4%)
Query: 62 LPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFI 121
+P SL S L+DL N LS +W L L L L N + I +P +
Sbjct: 33 VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90
Query: 122 QILDLSSNNIPGIIPKCFNNFTAMAQ--EKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAV 179
+ LDLSSN++ + F++ A+ ++ + V F QL + S +
Sbjct: 91 RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL--YLSQNQI 148
Query: 180 LTWKGSQYQYQNTLGLVKMLDLSSNKL 206
+ + N L + +LDLSSNKL
Sbjct: 149 SRFPVELIKDGNKLPKLMLLDLSSNKL 175
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTG 60
+ L+LS+N+L+G + C P ++++LDL NN IP + L +Q L++ +N L
Sbjct: 431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS 487
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 53/140 (37%), Gaps = 26/140 (18%)
Query: 3 LDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMG---SLPNIQILSLHNNSLT 59
LDLS+N L P C+ +L L L N + + + + S +IQ LSL NN L
Sbjct: 176 LDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLL 235
Query: 60 GELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLP 119
S+ KW L L L N H + YLP
Sbjct: 236 ATSESTFSGL------------------KWTN-----LTQLDLSYNNLHDVGNGSFSYLP 272
Query: 120 FIQILDLSSNNIPGIIPKCF 139
++ L L NNI + P+ F
Sbjct: 273 SLRYLSLEYNNIQRLSPRSF 292
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 96/240 (40%), Gaps = 38/240 (15%)
Query: 24 LRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALS 83
L LDL+ NN S LP+++ LSL N++ P S S L + L R
Sbjct: 250 LTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTK 309
Query: 84 GEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFN--- 140
+ SL S+ I F +L +++ L++ NNIP F
Sbjct: 310 QSV--------------SLASHP--NIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLV 353
Query: 141 --NFTAMAQEKSSVLSVTSEYWFAGG----LQLTTAGDFFSGQA--VLTWKGSQYQYQNT 192
+ ++++ +S+ ++T+E + + L L + S A +W
Sbjct: 354 SLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSW---------- 403
Query: 193 LGLVKMLDLSSNKLGGEVP-EEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSR 251
LG +++LDL N++ ++ +E L + + LS N T + SL L L R
Sbjct: 404 LGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRR 463
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 3/139 (2%)
Query: 3 LDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGEL 62
LD N +S P+ + L++L+L +N S + N+ L L +NS+
Sbjct: 54 LDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIK 113
Query: 63 PSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYL--PF 120
+ +N LI +DL N LS G L L L L NK + +L +L
Sbjct: 114 SNPFKNQKNLIKLDLSHNGLSS-TKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSS 172
Query: 121 IQILDLSSNNIPGIIPKCF 139
++ LDLSSN + P CF
Sbjct: 173 LRKLDLSSNPLKEFSPGCF 191
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 24 LRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLT--------GELPSSLQNCSLLILM 75
L ILDL+NNN + D + L N++IL +N+L G + L+ S L ++
Sbjct: 482 LTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHIL 541
Query: 76 DLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGII 135
+L N L EIP + ++L +L ++L N + + PF ++ L+L N I +
Sbjct: 542 NLESNGL-DEIPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLITSVE 600
Query: 136 PKCF 139
F
Sbjct: 601 KDVF 604
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 93/238 (39%), Gaps = 28/238 (11%)
Query: 3 LDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGEL 62
LDL NN +S D + L L L NN S + L +Q L + N L E+
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EI 117
Query: 63 PSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFH--GIIP--FQLCYL 118
P +L S L+ + + N + ++PK + L + + + N G P F L
Sbjct: 118 PPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKL 174
Query: 119 PFIQILDLSSNNIPGIIPKCFNNF-----TAMAQEKSSVLSVTSEYWFAGGLQLTTAGDF 173
+++I + IP +P+ N A E +L + Y G
Sbjct: 175 NYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG--------- 225
Query: 174 FSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLT 231
Q + GS + L ++ L L +NKL VP + DL L + L NN+T
Sbjct: 226 -HNQIRMIENGS----LSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNIT 277
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 47 NIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNK 106
N QIL LH+N +T P + L + LG N L G +P + +SL +L VL L +N+
Sbjct: 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ 99
Query: 107 F 107
Sbjct: 100 L 100
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
Query: 25 RILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSL-QNCSLLILMDLGRNALS 83
+IL L +N + P SL N++ L L +N L G LP + + + L ++DLG N L+
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 84 GEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFT 143
+P + + L L L + NK +P + L + L L N + I F+ +
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159
Query: 144 AMAQ 147
++
Sbjct: 160 SLTH 163
>pdb|4EYT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Tetrahymena
Telomerase Protein P65
pdb|4EYT|B Chain B, Crystal Structure Of The C-Terminal Domain Of Tetrahymena
Telomerase Protein P65
pdb|4EYT|C Chain C, Crystal Structure Of The C-Terminal Domain Of Tetrahymena
Telomerase Protein P65
pdb|4EYT|D Chain D, Crystal Structure Of The C-Terminal Domain Of Tetrahymena
Telomerase Protein P65
pdb|4EYT|E Chain E, Crystal Structure Of The C-Terminal Domain Of Tetrahymena
Telomerase Protein P65
pdb|4EYT|F Chain F, Crystal Structure Of The C-Terminal Domain Of Tetrahymena
Telomerase Protein P65
Length = 129
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 172 DFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRN 228
D+ GQA++ ++ S Q L + K+L+ ++NKL E+ +I D++ I + +N
Sbjct: 43 DYIDGQAMIRFQNSDEQ---RLAIQKLLNHNNNKLQIEIRGQICDVISTIPEDEEKN 96
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 1/143 (0%)
Query: 3 LDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGEL 62
LDL +N LS + +LR+L L +N L N++ L + +N L
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 63 PSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQ 122
L + L RN L +P + +SL KL LSL N+ + L ++
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK 160
Query: 123 ILDLSSNNIPGIIPKCFNNFTAM 145
L L +N + + F+ T +
Sbjct: 161 ELRLYNNQLKRVPEGAFDKLTEL 183
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 62 LPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFI 121
+P L N L L+DL N +S + ++ +L+ L L N+ I P L +
Sbjct: 46 VPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104
Query: 122 QILDLSSNNIPGIIPKCFNNFTAMAQ 147
++L L N+I + FN+ +A++
Sbjct: 105 RLLSLHGNDISVVPEGAFNDLSALSH 130
>pdb|4ERD|A Chain A, Crystal Structure Of The C-Terminal Domain Of Tetrahymena
Telomerase Protein P65 In Complex With Stem Iv Of
Telomerase Rna
pdb|4ERD|B Chain B, Crystal Structure Of The C-Terminal Domain Of Tetrahymena
Telomerase Protein P65 In Complex With Stem Iv Of
Telomerase Rna
Length = 129
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 172 DFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRN 228
D+ GQA + ++ S Q L + K+L+ ++NKL E+ +I D++ I + +N
Sbjct: 43 DYIDGQAXIRFQNSDEQ---RLAIQKLLNHNNNKLQIEIRGQICDVISTIPEDEEKN 96
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 33 NFSGKIPDSMGSLPN-----IQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIP 87
+ SGK S+ S+P Q+L L++N +T P + L +DL N L+ +P
Sbjct: 23 DCSGK---SLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLP 78
Query: 88 KWIGESLPKLIVLSLMSNKFHGI 110
+ + L +L LSL N+ I
Sbjct: 79 AGVFDKLTQLTQLSLNDNQLKSI 101
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 33 NFSGKIPDSMGSLPN-----IQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIP 87
+ SGK S+ S+P Q+L L++N +T P + L +DL N L+ +P
Sbjct: 15 DCSGK---SLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLP 70
Query: 88 KWIGESLPKLIVLSLMSNKFHGI 110
+ + L +L LSL N+ I
Sbjct: 71 AGVFDKLTQLTQLSLNDNQLKSI 93
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 23 RLRILDLANNNFSGKIPDSMGSLPNIQILSL--HNNSLTGEL 62
R+ L LA G++PD++G L +++LS H+ +++G L
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRL 365
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSL 58
+ L+LS N L + D+L +LDL+ N+ S LPN++ L+L N L
Sbjct: 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 98/259 (37%), Gaps = 34/259 (13%)
Query: 24 LRILDLANNNFSGKI--PDSMGSLPNIQILSLHNNSLTGELPSSL-QNCSLLILMDLGRN 80
L +L L N G + + L ++++L L +N++ P+S N ++DL N
Sbjct: 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164
Query: 81 ALSG----EIPKWIGESLPKL----IVLSLMSNKFHGIIPFQLCYLPF----IQILDLSS 128
+ ++ + G+ L I L M+ + G ++ C PF I LDLS
Sbjct: 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG---WEKCGNPFKNTSITTLDLSG 221
Query: 129 NNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGD----FFSGQAVLTWKG 184
N + K F F A+A K L +++ Y T D F G K
Sbjct: 222 NGFKESMAKRF--FDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKT 279
Query: 185 SQYQYQNTLGLVK----------MLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQI 234
L+K L L+ N++ L L+ +NLS+N L
Sbjct: 280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID 339
Query: 235 TPKIGQLKSLDFLDLSRNR 253
+ L L+ LDLS N
Sbjct: 340 SRMFENLDKLEVLDLSYNH 358
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 33 NFSGKIPDSMGSLPN-----IQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIP 87
+ SGK S+ S+P Q+L L++N +T P + L +DL N L+ +P
Sbjct: 15 DCSGK---SLASVPTGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT-VLP 70
Query: 88 KWIGESLPKLIVLSLMSNKFHGI 110
+ + L +L LSL N+ I
Sbjct: 71 AGVFDKLTQLTQLSLNDNQLKSI 93
>pdb|3VIU|A Chain A, Crystal Structure Of Purl From Thermus Thermophilus
Length = 725
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 176 GQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQIT 235
G A LT S+ +++ LG+ LDL + G PEE++ LS + +
Sbjct: 261 GAAGLTSSLSELAHKSGLGVELHLDLVPTREEGXTPEELL---------LSESQERXVLV 311
Query: 236 PKIGQLKSLD 245
PK G+ K+L+
Sbjct: 312 PKEGKEKALE 321
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 94/224 (41%), Gaps = 19/224 (8%)
Query: 37 KIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSG-EIPKWIGESLP 95
++PD + + N ++L+LH N + +S ++ L ++ L RN + EI + G L
Sbjct: 57 EVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG--LA 112
Query: 96 KLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQ---EKSSV 152
L L L N+ I YL ++ L L +N I I FN ++ + +
Sbjct: 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR 172
Query: 153 LSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKM--LDLSSNKLGGEV 210
LS SE F G L + A+ + + N L+K+ LDLS N L
Sbjct: 173 LSYISEGAFEGLSNLR-----YLNLAMCNLR----EIPNLTPLIKLDELDLSGNHLSAIR 223
Query: 211 PEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRF 254
P L+ L + + ++ + L+SL ++L+ N
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 196 VKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRN 252
VK LDLS+N++ ++ V L A+ L+ N + L SL+ LDLS N
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110
>pdb|1S62|A Chain A, Solution Structure Of The Escherichia Coli Tola C-Terminal
Domain
Length = 106
Score = 28.5 bits (62), Expect = 6.6, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 276 NNLSGKIPSGTQLQSFNASTYAGNELCGLPLPNKCPDG---DLPPRPG 320
NN +G+I S + + ++AS+YAG + C L + PDG D+ P G
Sbjct: 17 NNYAGQIKSAIESKFYDASSYAG-KTCTLRI-KLAPDGMLLDIKPEGG 62
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 51 LSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIG 91
L L+ NSLT ELP+ ++N S L ++DL N L+ +P +G
Sbjct: 252 LYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELG 290
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 196 VKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRN 252
VK LDLS+N++ ++ V L A+ L+ N + L SL+ LDLS N
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 84
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 25 RILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSG 84
R L+L NN D+ L ++++L L NS+ + + L ++L N L+
Sbjct: 78 RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT- 136
Query: 85 EIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDL 126
IP E L KL L L +N I + +P + LDL
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL 178
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 3 LDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGEL 62
L L NN +S P + +L L L+ N ++P+ M +Q L +H N +T
Sbjct: 81 LILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPK--TLQELRVHENEITKVR 137
Query: 63 PSSLQNCSLLILMDLGRNALS 83
S + +I+++LG N L
Sbjct: 138 KSVFNGLNQMIVVELGTNPLK 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,471,857
Number of Sequences: 62578
Number of extensions: 471266
Number of successful extensions: 1268
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 946
Number of HSP's gapped (non-prelim): 202
length of query: 395
length of database: 14,973,337
effective HSP length: 101
effective length of query: 294
effective length of database: 8,652,959
effective search space: 2543969946
effective search space used: 2543969946
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)