Query 043041
Match_columns 395
No_of_seqs 404 out of 3660
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 12:13:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043041.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043041hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 9.3E-37 2E-41 321.1 23.2 304 1-305 287-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 8.8E-34 1.9E-38 298.6 22.4 301 1-303 263-585 (968)
3 KOG4194 Membrane glycoprotein 100.0 5.2E-31 1.1E-35 242.6 0.8 293 2-301 129-428 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.1E-29 2.3E-34 234.0 4.4 295 1-302 81-378 (873)
5 KOG0444 Cytoskeletal regulator 99.9 3.4E-29 7.3E-34 232.5 -3.8 267 2-301 59-328 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 6.7E-28 1.5E-32 223.9 -2.1 271 2-307 82-381 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 3.9E-28 8.4E-33 214.6 -9.5 260 2-301 49-309 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 2E-26 4.2E-31 203.9 -3.9 290 3-302 165-541 (565)
9 KOG4237 Extracellular matrix p 99.9 1.1E-25 2.4E-30 198.7 -4.5 271 2-281 71-361 (498)
10 KOG4237 Extracellular matrix p 99.9 1.8E-23 3.9E-28 184.9 -0.3 295 4-304 52-362 (498)
11 PRK15387 E3 ubiquitin-protein 99.8 3.3E-20 7.2E-25 184.3 15.8 241 2-284 205-463 (788)
12 PLN03210 Resistant to P. syrin 99.8 1.4E-19 3E-24 192.1 20.5 287 2-302 593-907 (1153)
13 KOG0618 Serine/threonine phosp 99.8 7E-23 1.5E-27 198.4 -5.0 262 2-299 223-486 (1081)
14 PRK15370 E3 ubiquitin-protein 99.8 3.8E-20 8.2E-25 184.9 13.8 242 2-302 182-428 (754)
15 PRK15370 E3 ubiquitin-protein 99.8 3.3E-20 7.1E-25 185.3 10.0 224 1-280 202-429 (754)
16 PLN03210 Resistant to P. syrin 99.8 1.5E-18 3.2E-23 184.3 19.3 275 10-305 576-862 (1153)
17 KOG0618 Serine/threonine phosp 99.8 2.8E-21 6.1E-26 187.4 -3.7 225 46-303 241-466 (1081)
18 KOG0617 Ras suppressor protein 99.8 7.6E-21 1.7E-25 150.1 -3.6 85 44-132 31-115 (264)
19 KOG0617 Ras suppressor protein 99.8 6E-21 1.3E-25 150.7 -4.4 165 66-287 29-194 (264)
20 cd00116 LRR_RI Leucine-rich re 99.8 9.7E-20 2.1E-24 168.3 -0.3 230 2-279 2-263 (319)
21 PRK15387 E3 ubiquitin-protein 99.7 2.6E-17 5.5E-22 163.9 14.9 241 22-304 201-460 (788)
22 cd00116 LRR_RI Leucine-rich re 99.7 2.1E-19 4.5E-24 166.0 0.1 233 1-281 26-293 (319)
23 PLN03150 hypothetical protein; 99.7 1.6E-16 3.4E-21 158.2 11.6 117 195-311 419-538 (623)
24 KOG0532 Leucine-rich repeat (L 99.5 4.3E-16 9.4E-21 144.4 -6.5 139 3-149 55-195 (722)
25 KOG0532 Leucine-rich repeat (L 99.5 1.9E-15 4.1E-20 140.2 -3.0 188 3-252 80-270 (722)
26 COG4886 Leucine-rich repeat (L 99.5 6.9E-14 1.5E-18 133.1 7.2 198 26-284 97-295 (394)
27 COG4886 Leucine-rich repeat (L 99.4 1.3E-13 2.8E-18 131.2 7.0 198 3-261 98-296 (394)
28 PLN03150 hypothetical protein; 99.4 4.7E-13 1E-17 133.4 8.6 110 23-133 419-529 (623)
29 KOG3207 Beta-tubulin folding c 99.3 1.1E-13 2.4E-18 124.9 -0.2 210 19-280 118-340 (505)
30 PF14580 LRR_9: Leucine-rich r 99.3 1.8E-12 3.8E-17 106.8 4.6 140 4-150 3-147 (175)
31 PF14580 LRR_9: Leucine-rich r 99.2 3.5E-12 7.6E-17 105.1 3.1 122 1-128 22-149 (175)
32 KOG3207 Beta-tubulin folding c 99.2 5.5E-12 1.2E-16 114.0 0.7 203 3-257 126-341 (505)
33 KOG1259 Nischarin, modulator o 99.2 4.1E-12 8.9E-17 109.7 -0.2 131 95-282 284-415 (490)
34 KOG1909 Ran GTPase-activating 99.2 1.6E-12 3.4E-17 114.4 -3.3 237 18-279 26-311 (382)
35 KOG1259 Nischarin, modulator o 99.1 7.2E-12 1.6E-16 108.2 0.1 104 22-132 284-387 (490)
36 PF13855 LRR_8: Leucine rich r 99.1 1E-10 2.3E-15 79.4 4.0 61 22-82 1-61 (61)
37 KOG4658 Apoptotic ATPase [Sign 99.1 9.1E-11 2E-15 119.9 5.3 285 2-293 527-823 (889)
38 KOG0531 Protein phosphatase 1, 99.1 1.6E-11 3.4E-16 117.3 -1.0 110 20-136 70-179 (414)
39 KOG0531 Protein phosphatase 1, 99.0 1.7E-11 3.6E-16 117.1 -2.3 210 4-279 78-290 (414)
40 PF13855 LRR_8: Leucine rich r 99.0 5.5E-10 1.2E-14 75.8 4.4 58 1-58 4-61 (61)
41 KOG1909 Ran GTPase-activating 98.9 1.4E-10 3.1E-15 102.3 -1.4 228 2-255 34-311 (382)
42 KOG4658 Apoptotic ATPase [Sign 98.8 7E-09 1.5E-13 106.3 7.6 122 3-126 550-675 (889)
43 KOG1859 Leucine-rich repeat pr 98.7 8.2E-10 1.8E-14 106.1 -4.8 109 192-305 185-295 (1096)
44 KOG4579 Leucine-rich repeat (L 98.5 5.7E-09 1.2E-13 80.2 -4.1 57 197-255 80-136 (177)
45 KOG2120 SCF ubiquitin ligase, 98.4 5E-09 1.1E-13 90.8 -6.1 86 47-133 186-274 (419)
46 KOG4579 Leucine-rich repeat (L 98.4 2.1E-08 4.5E-13 77.1 -2.1 60 71-132 54-113 (177)
47 KOG1859 Leucine-rich repeat pr 98.4 4.8E-09 1E-13 100.9 -7.8 105 23-134 165-269 (1096)
48 KOG2982 Uncharacterized conser 98.4 5.4E-08 1.2E-12 84.5 -0.8 204 45-274 70-287 (418)
49 KOG1644 U2-associated snRNP A' 98.3 1.1E-06 2.4E-11 72.3 5.7 102 22-128 42-149 (233)
50 PF12799 LRR_4: Leucine Rich r 98.3 8.6E-07 1.9E-11 55.1 3.5 36 47-83 2-37 (44)
51 KOG2982 Uncharacterized conser 98.2 1.1E-07 2.3E-12 82.7 -1.6 201 20-255 69-290 (418)
52 COG5238 RNA1 Ran GTPase-activa 98.2 1E-07 2.2E-12 81.7 -1.7 112 21-132 29-170 (388)
53 PF12799 LRR_4: Leucine Rich r 98.1 1.8E-06 3.8E-11 53.7 2.5 38 22-60 1-38 (44)
54 KOG2120 SCF ubiquitin ligase, 98.1 5.8E-08 1.2E-12 84.3 -6.7 178 71-275 186-372 (419)
55 PRK15386 type III secretion pr 98.1 2.3E-05 5E-10 72.9 9.6 73 45-131 51-124 (426)
56 KOG1644 U2-associated snRNP A' 98.0 1.3E-05 2.9E-10 66.0 6.4 105 24-133 21-127 (233)
57 COG5238 RNA1 Ran GTPase-activa 98.0 3.2E-06 6.9E-11 72.8 1.7 38 194-231 214-255 (388)
58 PF13306 LRR_5: Leucine rich r 97.9 3.9E-05 8.5E-10 60.4 7.6 124 15-145 5-128 (129)
59 PRK15386 type III secretion pr 97.8 0.00013 2.7E-09 68.1 9.0 66 66-139 48-114 (426)
60 KOG3665 ZYG-1-like serine/thre 97.6 4.2E-05 9.1E-10 76.9 3.4 82 70-153 122-205 (699)
61 KOG3665 ZYG-1-like serine/thre 97.5 2.9E-05 6.4E-10 78.1 1.4 128 2-135 126-266 (699)
62 PF13306 LRR_5: Leucine rich r 97.4 0.00052 1.1E-08 54.0 6.5 113 2-121 16-128 (129)
63 KOG2739 Leucine-rich acidic nu 97.3 9.9E-05 2.1E-09 63.5 1.5 107 38-149 35-149 (260)
64 KOG2739 Leucine-rich acidic nu 97.3 0.00015 3.3E-09 62.4 2.5 111 14-128 35-152 (260)
65 KOG2123 Uncharacterized conser 96.9 2.4E-05 5.3E-10 67.7 -5.6 100 21-125 18-123 (388)
66 KOG2123 Uncharacterized conser 96.3 0.0002 4.2E-09 62.2 -4.3 100 45-149 18-123 (388)
67 PF00560 LRR_1: Leucine Rich R 96.2 0.0021 4.5E-08 33.2 0.9 12 24-35 2-13 (22)
68 PF00560 LRR_1: Leucine Rich R 96.1 0.0028 6.1E-08 32.7 1.0 18 48-66 2-19 (22)
69 smart00369 LRR_TYP Leucine-ric 94.9 0.028 6E-07 30.2 2.4 22 69-91 1-22 (26)
70 smart00370 LRR Leucine-rich re 94.9 0.028 6E-07 30.2 2.4 22 69-91 1-22 (26)
71 PF13504 LRR_7: Leucine rich r 94.9 0.016 3.6E-07 27.7 1.2 12 72-83 3-14 (17)
72 KOG4308 LRR-containing protein 94.8 0.0002 4.4E-09 69.0 -10.9 85 48-132 89-185 (478)
73 KOG4308 LRR-containing protein 94.7 0.00012 2.5E-09 70.7 -12.7 108 24-132 89-217 (478)
74 KOG0473 Leucine-rich repeat pr 94.5 0.001 2.2E-08 56.5 -6.0 89 40-132 36-124 (326)
75 KOG0473 Leucine-rich repeat pr 94.2 0.0008 1.7E-08 57.0 -7.2 89 16-108 36-124 (326)
76 PF04478 Mid2: Mid2 like cell 92.6 0.05 1.1E-06 43.0 0.9 54 338-391 50-103 (154)
77 smart00370 LRR Leucine-rich re 91.4 0.15 3.2E-06 27.3 1.7 13 47-59 3-15 (26)
78 smart00369 LRR_TYP Leucine-ric 91.4 0.15 3.2E-06 27.3 1.7 13 47-59 3-15 (26)
79 PF13516 LRR_6: Leucine Rich r 89.4 0.18 3.9E-06 26.4 0.9 13 71-83 3-15 (24)
80 PF01102 Glycophorin_A: Glycop 86.9 0.54 1.2E-05 36.1 2.4 30 337-366 64-93 (122)
81 KOG1947 Leucine rich repeat pr 86.9 0.5 1.1E-05 46.0 2.9 113 20-132 186-308 (482)
82 KOG1947 Leucine rich repeat pr 85.2 0.23 5E-06 48.4 -0.4 88 19-106 211-306 (482)
83 KOG3864 Uncharacterized conser 83.3 0.15 3.3E-06 42.7 -2.2 81 195-275 102-185 (221)
84 smart00365 LRR_SD22 Leucine-ri 83.1 1 2.3E-05 24.1 1.8 14 70-83 2-15 (26)
85 smart00364 LRR_BAC Leucine-ric 81.3 1 2.3E-05 24.1 1.3 17 71-88 3-19 (26)
86 KOG3864 Uncharacterized conser 78.6 0.36 7.8E-06 40.5 -1.5 33 48-80 103-135 (221)
87 PF02439 Adeno_E3_CR2: Adenovi 77.0 3.3 7.2E-05 24.3 2.6 12 338-349 8-19 (38)
88 smart00368 LRR_RI Leucine rich 75.3 2.5 5.4E-05 23.0 1.7 14 242-255 2-15 (28)
89 KOG3763 mRNA export factor TAP 75.0 1.6 3.6E-05 42.2 1.6 63 44-108 216-283 (585)
90 PF08693 SKG6: Transmembrane a 74.1 1.7 3.8E-05 25.9 0.9 11 338-348 13-23 (40)
91 PF02439 Adeno_E3_CR2: Adenovi 68.5 6.3 0.00014 23.1 2.4 20 339-358 5-24 (38)
92 PF07204 Orthoreo_P10: Orthore 67.4 4.7 0.0001 29.0 2.1 32 334-365 39-70 (98)
93 PF08374 Protocadherin: Protoc 66.4 3.1 6.7E-05 35.1 1.2 29 335-363 36-64 (221)
94 KOG4341 F-box protein containi 62.5 3.4 7.3E-05 38.8 0.8 113 20-132 292-414 (483)
95 PF11770 GAPT: GRB2-binding ad 61.4 7.1 0.00015 30.8 2.3 28 340-367 10-37 (158)
96 PTZ00382 Variant-specific surf 58.1 3.2 6.9E-05 30.6 -0.1 11 338-348 67-77 (96)
97 TIGR00864 PCC polycystin catio 57.7 6.6 0.00014 45.7 2.2 32 224-255 1-32 (2740)
98 PF15102 TMEM154: TMEM154 prot 57.4 11 0.00024 29.8 2.8 13 353-365 75-87 (146)
99 PF15050 SCIMP: SCIMP protein 57.1 11 0.00023 28.5 2.5 14 353-366 23-36 (133)
100 KOG3763 mRNA export factor TAP 54.6 7 0.00015 38.1 1.5 36 69-105 217-254 (585)
101 PF04971 Lysis_S: Lysis protei 51.2 18 0.0004 24.4 2.6 27 337-363 33-59 (68)
102 PF01034 Syndecan: Syndecan do 50.2 5.2 0.00011 26.6 -0.0 12 339-350 11-22 (64)
103 PRK00523 hypothetical protein; 50.2 19 0.0004 24.7 2.6 30 340-369 6-35 (72)
104 PF14575 EphA2_TM: Ephrin type 49.3 17 0.00037 25.3 2.4 9 342-350 6-14 (75)
105 PRK01844 hypothetical protein; 48.7 21 0.00045 24.5 2.6 27 343-369 8-34 (72)
106 KOG4242 Predicted myosin-I-bin 47.1 88 0.0019 30.3 7.3 17 120-136 355-371 (553)
107 PF12191 stn_TNFRSF12A: Tumour 46.4 10 0.00022 29.1 1.0 28 343-370 85-112 (129)
108 KOG4341 F-box protein containi 44.6 13 0.00028 35.1 1.5 113 19-131 317-438 (483)
109 PF02009 Rifin_STEVOR: Rifin/s 43.5 20 0.00044 32.5 2.6 14 350-363 270-283 (299)
110 TIGR00864 PCC polycystin catio 41.8 17 0.00037 42.7 2.2 32 52-83 1-32 (2740)
111 PF06084 Cytomega_TRL10: Cytom 40.6 30 0.00065 25.8 2.6 27 336-362 54-80 (150)
112 PF12606 RELT: Tumour necrosis 37.5 30 0.00066 21.9 2.0 23 351-373 13-35 (50)
113 smart00367 LRR_CC Leucine-rich 36.7 26 0.00056 18.4 1.4 13 265-277 1-13 (26)
114 PF06305 DUF1049: Protein of u 36.0 45 0.00097 22.4 2.9 12 340-351 22-33 (68)
115 PF15179 Myc_target_1: Myc tar 35.3 30 0.00066 28.4 2.1 23 337-359 24-46 (197)
116 PF04478 Mid2: Mid2 like cell 33.5 43 0.00094 26.8 2.7 36 333-369 49-84 (154)
117 TIGR01477 RIFIN variant surfac 33.0 38 0.00082 31.3 2.6 24 341-364 315-338 (353)
118 PTZ00046 rifin; Provisional 32.9 41 0.00089 31.2 2.9 24 341-364 320-343 (358)
119 PF07213 DAP10: DAP10 membrane 31.3 47 0.001 23.3 2.2 29 337-365 34-63 (79)
120 PF14991 MLANA: Protein melan- 31.2 8.7 0.00019 28.8 -1.4 7 353-359 41-47 (118)
121 PF06667 PspB: Phage shock pro 31.2 1.4E+02 0.003 20.8 4.6 15 379-393 44-58 (75)
122 PF13908 Shisa: Wnt and FGF in 31.0 33 0.00072 28.5 1.9 13 337-349 79-91 (179)
123 PF08374 Protocadherin: Protoc 29.1 68 0.0015 27.3 3.3 37 333-369 37-73 (221)
124 PF15176 LRR19-TM: Leucine-ric 28.7 65 0.0014 23.7 2.7 7 339-345 20-26 (102)
125 PF12877 DUF3827: Domain of un 28.6 48 0.001 33.1 2.7 21 335-355 268-288 (684)
126 PF11694 DUF3290: Protein of u 28.5 1.5E+02 0.0033 23.8 5.1 43 349-391 28-70 (149)
127 PF15102 TMEM154: TMEM154 prot 28.4 34 0.00074 27.2 1.4 31 339-369 58-88 (146)
128 PF05808 Podoplanin: Podoplani 26.7 21 0.00047 28.8 0.0 31 337-367 129-160 (162)
129 PF06716 DUF1201: Protein of u 26.5 97 0.0021 19.0 2.7 20 340-359 9-28 (54)
130 PF12301 CD99L2: CD99 antigen 26.3 74 0.0016 26.2 3.0 31 337-368 115-145 (169)
131 PF11240 DUF3042: Protein of u 25.6 1.9E+02 0.0042 18.7 5.0 16 380-395 39-54 (54)
132 PF06024 DUF912: Nucleopolyhed 25.5 52 0.0011 24.4 1.9 18 344-361 69-86 (101)
133 PF02480 Herpes_gE: Alphaherpe 25.3 24 0.00051 34.1 0.0 7 375-381 392-398 (439)
134 PF12273 RCR: Chitin synthesis 25.0 40 0.00087 26.3 1.3 24 343-366 5-28 (130)
135 PF14610 DUF4448: Protein of u 24.8 30 0.00066 29.0 0.6 19 339-357 159-177 (189)
136 PF14316 DUF4381: Domain of un 24.3 1.7E+02 0.0036 23.3 4.8 10 359-368 42-51 (146)
137 PF01102 Glycophorin_A: Glycop 24.0 85 0.0019 24.2 2.8 31 335-366 66-96 (122)
138 PHA03099 epidermal growth fact 23.2 88 0.0019 24.2 2.7 22 343-364 106-127 (139)
139 KOG4242 Predicted myosin-I-bin 22.9 79 0.0017 30.6 2.9 106 22-132 165-281 (553)
140 TIGR02976 phageshock_pspB phag 20.9 2.8E+02 0.0061 19.3 4.6 14 380-393 45-58 (75)
141 PF06295 DUF1043: Protein of u 20.6 78 0.0017 24.7 2.1 11 340-350 4-14 (128)
142 PF14914 LRRC37AB_C: LRRC37A/B 20.2 1E+02 0.0023 24.5 2.6 28 338-365 121-148 (154)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.3e-37 Score=321.13 Aligned_cols=304 Identities=34% Similarity=0.505 Sum_probs=239.1
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++|++++|.+++.+|..+.++++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|
T Consensus 287 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 287 ISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred CEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence 46888999988888888888889999999998888888888888888888888888888888888888888888888888
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCcccc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYW 160 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 160 (395)
.+.+.+|..+. .+++|+.|++++|++.+.+|..+..+++|+.|++++|.+++..|..+..++.|+.++...........
T Consensus 367 ~l~~~~p~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 445 (968)
T PLN00113 367 NLTGEIPEGLC-SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRIN 445 (968)
T ss_pred eeEeeCChhHh-CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccC
Confidence 88877777776 47777777777777777777777777777777777777777777777666666666544333222111
Q ss_pred c----cC--------CccccC-CCCc--cccceEEE-----eeccccccccccCcccEEECcCCCCccCCChhhhcCcCC
Q 043041 161 F----AG--------GLQLTT-AGDF--FSGQAVLT-----WKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGL 220 (395)
Q Consensus 161 ~----~~--------~~~~~~-~~~~--~~~~~~~~-----~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 220 (395)
. .. .+.+.. .+.. ......+. +.+..+..+..++.|+.|++++|++.+.+|..+..+++|
T Consensus 446 ~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 525 (968)
T PLN00113 446 SRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKL 525 (968)
T ss_pred hhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCC
Confidence 0 00 000000 0000 01111222 234455567788999999999999999999999999999
Q ss_pred CEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCCcccCccccccccCC-
Q 043041 221 IAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSGTQLQSFNASTYAGN- 299 (395)
Q Consensus 221 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~l~~l~~~~~~gN- 299 (395)
+.|+|++|.+++.+|..++.+++|+.|||++|++++.+|..+..+++|+.|++++|+++|.+|...++.++...++.||
T Consensus 526 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 526 VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNI 605 (968)
T ss_pred CEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 043041 300 ELCGLP 305 (395)
Q Consensus 300 ~lc~~~ 305 (395)
.+|+.+
T Consensus 606 ~lc~~~ 611 (968)
T PLN00113 606 DLCGGD 611 (968)
T ss_pred cccCCc
Confidence 899754
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=8.8e-34 Score=298.62 Aligned_cols=301 Identities=34% Similarity=0.459 Sum_probs=254.3
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++|++++|.+++.+|..+.++++|+.|++++|++.+.+|..+.++++|++|++++|.+++..|..+..+++|+.|++++|
T Consensus 263 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 342 (968)
T PLN00113 263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN 342 (968)
T ss_pred CEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCcccc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYW 160 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 160 (395)
.+.+.+|..+. .+++|+.|++++|++.+.+|..++.+++|+.|++++|.+.+..|..+..+++|+.+............
T Consensus 343 ~l~~~~p~~l~-~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p 421 (968)
T PLN00113 343 KFSGEIPKNLG-KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP 421 (968)
T ss_pred CCcCcCChHHh-CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECC
Confidence 99999999887 59999999999999999999999999999999999999999999999999999888765443332111
Q ss_pred c----c--------CCccccCCC----CccccceEEEee-----ccccccccccCcccEEECcCCCCccCCChhhhcCcC
Q 043041 161 F----A--------GGLQLTTAG----DFFSGQAVLTWK-----GSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVG 219 (395)
Q Consensus 161 ~----~--------~~~~~~~~~----~~~~~~~~~~~~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 219 (395)
. . ..+.+.... ........+.+. +..+..+ ..++|+.|++++|++++.+|..+..+++
T Consensus 422 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~ 500 (968)
T PLN00113 422 SEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSE 500 (968)
T ss_pred hhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhc
Confidence 0 0 011111100 011111122221 2222222 3478999999999999999999999999
Q ss_pred CCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCC-cccCccccccccC
Q 043041 220 LIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSG-TQLQSFNASTYAG 298 (395)
Q Consensus 220 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~l~~l~~~~~~g 298 (395)
|+.|+|++|.+++.+|..+..+++|++|+|++|.+++.+|..+..+++|+.|++++|+++|.+|.. ..+..+..+++++
T Consensus 501 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~ 580 (968)
T PLN00113 501 LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISH 580 (968)
T ss_pred cCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccC
Confidence 999999999999999999999999999999999999999999999999999999999999999975 5677888899999
Q ss_pred CCCCC
Q 043041 299 NELCG 303 (395)
Q Consensus 299 N~lc~ 303 (395)
|.+.+
T Consensus 581 N~l~~ 585 (968)
T PLN00113 581 NHLHG 585 (968)
T ss_pred Cccee
Confidence 96554
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=5.2e-31 Score=242.56 Aligned_cols=293 Identities=25% Similarity=0.246 Sum_probs=176.7
Q ss_pred EEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCc
Q 043041 2 YLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNA 81 (395)
Q Consensus 2 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~ 81 (395)
.|+|.+|.|+.+-.+.++-++.|+.||||.|.|+.+.-.+|..=.++++|+|++|+|+..-...|..+.+|.+|.|+.|+
T Consensus 129 ~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr 208 (873)
T KOG4194|consen 129 KLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR 208 (873)
T ss_pred EEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc
Confidence 45666666665555556666666666666666664444455555566666666666666555666666666666666666
Q ss_pred ccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccccc
Q 043041 82 LSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWF 161 (395)
Q Consensus 82 l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~ 161 (395)
++ .+|...|+++++|+.|+|..|+|.-.---.|..+++|+.|.+..|++...-...|..+.+++.++...........+
T Consensus 209 it-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g 287 (873)
T KOG4194|consen 209 IT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEG 287 (873)
T ss_pred cc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcc
Confidence 66 66666666666666666666666533344556666666666666666655555666666665555433322221111
Q ss_pred c--CCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccC
Q 043041 162 A--GGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIG 239 (395)
Q Consensus 162 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 239 (395)
+ +...+......+..... .........++|+.|||++|+++...+..|..+..|+.|+|++|.++..-...|.
T Consensus 288 ~lfgLt~L~~L~lS~NaI~r-----ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~ 362 (873)
T KOG4194|consen 288 WLFGLTSLEQLDLSYNAIQR-----IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV 362 (873)
T ss_pred cccccchhhhhccchhhhhe-----eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH
Confidence 0 00000000000000000 0111123456677888888888777777777778888888888887766666777
Q ss_pred CCCCCCEEECcCCccCccCcc---cccCCCCCCEEeCcCCcCcccCCCC--cccCccccccccCCCC
Q 043041 240 QLKSLDFLDLSRNRFFGGIPS---SLSLLSGLSVMDLSYNNLSGKIPSG--TQLQSFNASTYAGNEL 301 (395)
Q Consensus 240 ~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~p~~--~~l~~l~~~~~~gN~l 301 (395)
.+++|+.|||++|.+++.+.+ .|..+++|+.|++.+|++. .||.. ..+..|..+++.+|.+
T Consensus 363 ~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcc
Confidence 788888888888887766553 3566778888888888876 44432 4566777777777744
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=1.1e-29 Score=233.96 Aligned_cols=295 Identities=24% Similarity=0.220 Sum_probs=238.8
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
+.||+|+|+++.+-+..|.++++|+.+++.+|.++ .+|...+...+|+.|+|.+|.|+.+..+.+..++.|+.||||.|
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 36999999999888888999999999999999998 78886666778999999999999888889999999999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccc-
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEY- 159 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~- 159 (395)
.++ ++|..-+..-.++++|+|++|.|+..--+.|..+.+|..|.|+.|.++...+..|.++++|+.|+..........
T Consensus 160 ~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ 238 (873)
T KOG4194|consen 160 LIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG 238 (873)
T ss_pred hhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence 999 999877755688999999999999888889999999999999999999988899999999999886544433221
Q ss_pred -cccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCccc
Q 043041 160 -WFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKI 238 (395)
Q Consensus 160 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 238 (395)
.+.+...+.. ..+.......+ ..-.+-.+.++++|+|+.|+++..-..++.+++.|+.|+||+|.|..+.++..
T Consensus 239 ltFqgL~Sl~n--lklqrN~I~kL---~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W 313 (873)
T KOG4194|consen 239 LTFQGLPSLQN--LKLQRNDISKL---DDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW 313 (873)
T ss_pred hhhcCchhhhh--hhhhhcCcccc---cCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh
Confidence 1111110000 00000000000 11123457788999999999998888889999999999999999998889999
Q ss_pred CCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCC-cccCccccccccCCCCC
Q 043041 239 GQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSG-TQLQSFNASTYAGNELC 302 (395)
Q Consensus 239 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~l~~l~~~~~~gN~lc 302 (395)
...++|+.|||++|+|+...+.+|..+..|+.|+|++|.++..-... ..+.+|..+++..|.+.
T Consensus 314 sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls 378 (873)
T KOG4194|consen 314 SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELS 378 (873)
T ss_pred hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEE
Confidence 99999999999999999888889999999999999999988543221 45778888899998654
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=3.4e-29 Score=232.47 Aligned_cols=267 Identities=28% Similarity=0.392 Sum_probs=203.0
Q ss_pred EEEccCCcccccCCCCccCCCCCCEEECCCCccc-ccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 2 YLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFS-GKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 2 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
+|.+++|++. .+...++.++.|+.+++..|++. .-+|+.+-.+..|.+||||+|+++ ..|..+..-+++-+|+||+|
T Consensus 59 HLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N 136 (1255)
T KOG0444|consen 59 HLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYN 136 (1255)
T ss_pred hhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccC
Confidence 5778888887 56667888888888888888874 336777778888999999999988 78888888888889999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCcccc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYW 160 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 160 (395)
.|. +||..++.++..|-.|||++|++. .+|+.+..+..|++|++++|.+.-..-..+..+++|+.+.......+
T Consensus 137 ~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT---- 210 (1255)
T KOG0444|consen 137 NIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT---- 210 (1255)
T ss_pred ccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch----
Confidence 988 889888888888888999999888 55667788888999999988876443334444455544442211111
Q ss_pred ccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCC
Q 043041 161 FAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQ 240 (395)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 240 (395)
...++..+..+.+|..+|+|.|++. ..|+++-.+++|+.||||+|+|+ ..-...+.
T Consensus 211 ----------------------l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~ 266 (1255)
T KOG0444|consen 211 ----------------------LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGE 266 (1255)
T ss_pred ----------------------hhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHH
Confidence 1234455667788888889988888 88888888888999999998888 55566677
Q ss_pred CCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcc-cCCCC-cccCccccccccCCCC
Q 043041 241 LKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSG-KIPSG-TQLQSFNASTYAGNEL 301 (395)
Q Consensus 241 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~-~~l~~l~~~~~~gN~l 301 (395)
+..|++|++|+|+++ .+|+.+..++.|+.|.+.+|+++- .||++ +.+..+.....+.|.|
T Consensus 267 W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L 328 (1255)
T KOG0444|consen 267 WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL 328 (1255)
T ss_pred Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence 788888888888888 788888888888888888887752 45655 5666666666666543
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=6.7e-28 Score=223.91 Aligned_cols=271 Identities=27% Similarity=0.374 Sum_probs=202.7
Q ss_pred EEEccCCcccc-cCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 2 YLDLSNNLLSG-RLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 2 ~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
.+++.+|+++. -+|..+-.++.|+.||||+|++. ..|..+..-+++-+|+||+|+|..+....|.+++.|-.||||+|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 35677788753 47777888999999999999998 68888888899999999999998555556778899999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeec-------------------------cccCccCCCCCCccEEEcccCCCCCCC
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFH-------------------------GIIPFQLCYLPFIQILDLSSNNIPGII 135 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~-------------------------~~~p~~l~~l~~L~~L~l~~n~l~~~~ 135 (395)
++. .+|+.+. .+..|++|.|++|.+. ..+|.++..+.+|..+|+|.|.+. ..
T Consensus 161 rLe-~LPPQ~R-RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~v 237 (1255)
T KOG0444|consen 161 RLE-MLPPQIR-RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IV 237 (1255)
T ss_pred hhh-hcCHHHH-HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cc
Confidence 998 8998887 5888999999888763 234556666666777777777775 56
Q ss_pred CccccccccchhccccccccCccccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhh
Q 043041 136 PKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIM 215 (395)
Q Consensus 136 ~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 215 (395)
|+++.++.+|..++......... ....+...+|+.|++|.|+++ .+|.++.
T Consensus 238 Pecly~l~~LrrLNLS~N~iteL----------------------------~~~~~~W~~lEtLNlSrNQLt-~LP~avc 288 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKITEL----------------------------NMTEGEWENLETLNLSRNQLT-VLPDAVC 288 (1255)
T ss_pred hHHHhhhhhhheeccCcCceeee----------------------------eccHHHHhhhhhhccccchhc-cchHHHh
Confidence 67777777666655332222111 011123456788888888888 7888888
Q ss_pred cCcCCCEEeCCCCcCc-ccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCC-cccCcccc
Q 043041 216 DLVGLIAMNLSRNNLT-GQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSG-TQLQSFNA 293 (395)
Q Consensus 216 ~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~l~~l~~ 293 (395)
.++.|+.|++.+|+++ .-+|..++.+.+|+.+..++|.+. ..|+.++.|+.|+.|.|++|++- +.|++ --++.+..
T Consensus 289 KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~v 366 (1255)
T KOG0444|consen 289 KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKV 366 (1255)
T ss_pred hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcce
Confidence 8888888888888875 457888888888888888888886 78888888888888888888877 44554 44666777
Q ss_pred ccccCC-CCCCCCCC
Q 043041 294 STYAGN-ELCGLPLP 307 (395)
Q Consensus 294 ~~~~gN-~lc~~~~~ 307 (395)
+++..| .|--+|.+
T Consensus 367 LDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 367 LDLRENPNLVMPPKP 381 (1255)
T ss_pred eeccCCcCccCCCCc
Confidence 788888 77655543
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=3.9e-28 Score=214.60 Aligned_cols=260 Identities=26% Similarity=0.346 Sum_probs=224.3
Q ss_pred EEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCc
Q 043041 2 YLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNA 81 (395)
Q Consensus 2 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~ 81 (395)
.+++++|.++ .+.+.+.++..|++|++.+|+++ ..|++++.+..++.|+.++|+++ .+|..+..+.+|+.++.+.|.
T Consensus 49 ~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~ 125 (565)
T KOG0472|consen 49 KLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNE 125 (565)
T ss_pred hhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccc
Confidence 4678899988 55556889999999999999998 68888999999999999999998 888999999999999999999
Q ss_pred ccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccccc
Q 043041 82 LSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWF 161 (395)
Q Consensus 82 l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~ 161 (395)
+. ++|+++++ +-.|..++..+|+++ ..|..+..+.+|..+++.+|.+....|..+. ++.|+.++.....
T Consensus 126 ~~-el~~~i~~-~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~------- 194 (565)
T KOG0472|consen 126 LK-ELPDSIGR-LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNL------- 194 (565)
T ss_pred ee-ecCchHHH-Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhh-------
Confidence 98 89999984 889999999999998 6677888888999999999999877666665 7888776642221
Q ss_pred cCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccC-C
Q 043041 162 AGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIG-Q 240 (395)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~ 240 (395)
-+..|+.++.+..|..|+|..|++. ..| .|..+..|+.|+++.|+|. .+|.... .
T Consensus 195 ---------------------L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~ 250 (565)
T KOG0472|consen 195 ---------------------LETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKH 250 (565)
T ss_pred ---------------------hhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcc
Confidence 2456677788999999999999999 777 8999999999999999998 7777665 8
Q ss_pred CCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCCcccCccccccccCCCC
Q 043041 241 LKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSGTQLQSFNASTYAGNEL 301 (395)
Q Consensus 241 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~l~~l~~~~~~gN~l 301 (395)
++++..|||.+|++. +.|+.+.-+.+|+.||+|+|.+++..++.+.+ ++..+.+.||.+
T Consensus 251 L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 251 LNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred cccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence 999999999999998 89999999999999999999999998888888 888999999954
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=2e-26 Score=203.89 Aligned_cols=290 Identities=28% Similarity=0.365 Sum_probs=181.5
Q ss_pred EEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcc
Q 043041 3 LDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNAL 82 (395)
Q Consensus 3 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l 82 (395)
+++.+|+++...|+ .-+++.|+.||...|-+. .+|..++.+.+|+.|+|..|++. .+| .|.+|..|++|+++.|.+
T Consensus 165 l~~~~n~l~~l~~~-~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i 240 (565)
T KOG0472|consen 165 LDLEGNKLKALPEN-HIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQI 240 (565)
T ss_pred hhccccchhhCCHH-HHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHH
Confidence 45666666633333 333777777777777665 67778888888888888888888 677 788888888888888888
Q ss_pred cccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccc--------
Q 043041 83 SGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLS-------- 154 (395)
Q Consensus 83 ~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~-------- 154 (395)
. .+|+.+++.+++|.+||+..|++. ..|+.++.+.+|.+||+++|.+++ .|-.++++ .|+.+.....+
T Consensus 241 ~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~i 316 (565)
T KOG0472|consen 241 E-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREI 316 (565)
T ss_pred H-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHH
Confidence 8 888888878888888888888888 778888888888888998888885 45556665 44433311110
Q ss_pred ----------------------cCcccc--ccCCc---------------------cccCCCCc-ccc-----ceEEEe-
Q 043041 155 ----------------------VTSEYW--FAGGL---------------------QLTTAGDF-FSG-----QAVLTW- 182 (395)
Q Consensus 155 ----------------------~~~~~~--~~~~~---------------------~~~~~~~~-~~~-----~~~~~~- 182 (395)
....-. ..... +++..+.- |.. .-...+
T Consensus 317 i~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnfs 396 (565)
T KOG0472|consen 317 ISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFS 396 (565)
T ss_pred HcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecc
Confidence 000000 00000 00000000 000 000111
Q ss_pred ---------------------------eccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCC
Q 043041 183 ---------------------------KGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQIT 235 (395)
Q Consensus 183 ---------------------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 235 (395)
.+..+..++.+++|+.|+|++|-+. .+|..++.+..|+.||+|+|++. .+|
T Consensus 397 kNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP 474 (565)
T KOG0472|consen 397 KNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLP 474 (565)
T ss_pred cchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cch
Confidence 1112223345556666666666665 56666666666666666666665 555
Q ss_pred cccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCCcccCccccccccCCCCC
Q 043041 236 PKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSGTQLQSFNASTYAGNELC 302 (395)
Q Consensus 236 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~l~~l~~~~~~gN~lc 302 (395)
..+-.+..++.+-.++|++....|+.+.++.+|+.||+.+|.+...+|..+.+.+++.+.+.||.+.
T Consensus 475 ~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 475 ECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 5554445555555555555544445577788888888888888866666677888888888887544
No 9
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=1.1e-25 Score=198.68 Aligned_cols=271 Identities=24% Similarity=0.189 Sum_probs=174.1
Q ss_pred EEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEeccc-ccCcccCchhccCCCCCCEEECCCC
Q 043041 2 YLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHN-NSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 2 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
+++|..|+|+.+.|.+|+.+++||.|||++|+|+.+-|++|.+++.|..|-+.+ |+|+......|.++..|+.|.+..|
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan 150 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN 150 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh
Confidence 466666777666666677777777777777777666667777766666655544 6666554456666777777777777
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCcccc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYW 160 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 160 (395)
++. -++...+..+++|..|.+..|.+...-...|..+..++.+.+..|.+.. ..+++.+....... ...+.
T Consensus 151 ~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~a~~---~iets 221 (498)
T KOG4237|consen 151 HIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDLAMN---PIETS 221 (498)
T ss_pred hhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhhHHhhc---hhhcc
Confidence 766 6666666566777777777776664444466666666666666665321 11122111100000 00000
Q ss_pred ccC-----------CccccCC--CC---ccccceE-EE-eeccc-cccccccCcccEEECcCCCCccCCChhhhcCcCCC
Q 043041 161 FAG-----------GLQLTTA--GD---FFSGQAV-LT-WKGSQ-YQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLI 221 (395)
Q Consensus 161 ~~~-----------~~~~~~~--~~---~~~~~~~-~~-~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 221 (395)
+.. ..++... .. .+.+... -. ..+.. ..-+..+++|+.|+|++|++++.-+.+|.....++
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~ 301 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQ 301 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhh
Confidence 000 0000000 00 0000000 00 00111 12267899999999999999998999999999999
Q ss_pred EEeCCCCcCcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCccc
Q 043041 222 AMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGK 281 (395)
Q Consensus 222 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 281 (395)
.|.|..|+|....-..|.++..|+.|+|.+|+|+..-|..|..+.+|..|+|-.|++-+.
T Consensus 302 eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 302 ELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred hhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence 999999999877777889999999999999999998999999999999999999988644
No 10
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=1.8e-23 Score=184.85 Aligned_cols=295 Identities=22% Similarity=0.248 Sum_probs=213.0
Q ss_pred EccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCC-Ccc
Q 043041 4 DLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGR-NAL 82 (395)
Q Consensus 4 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~-n~l 82 (395)
|-++-.++ .+|..+. +.-+.++|..|+|+.+.|.+|+.+++|+.|||++|.|+.+-|++|.++.+|..|-+.+ |+|
T Consensus 52 dCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 52 DCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred EccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 33444555 5676654 4567899999999988889999999999999999999999999999999988876666 999
Q ss_pred cccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCcc---c
Q 043041 83 SGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSE---Y 159 (395)
Q Consensus 83 ~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~---~ 159 (395)
+ .+|...|+++..|+.|.+.-|++.-...+.|..+++|..|.+.+|.+..+.-..|..+..++.+.....+..-. -
T Consensus 129 ~-~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~ 207 (498)
T KOG4237|consen 129 T-DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLP 207 (498)
T ss_pred h-hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccc
Confidence 9 99999999999999999999999988888999999999999999999876666888888877765332221111 0
Q ss_pred cccCCccccCCCCccccceEEE-----ee--cc--ccccccccCcccEEECcCCCCccCCC-hhhhcCcCCCEEeCCCCc
Q 043041 160 WFAGGLQLTTAGDFFSGQAVLT-----WK--GS--QYQYQNTLGLVKMLDLSSNKLGGEVP-EEIMDLVGLIAMNLSRNN 229 (395)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~-----~~--~~--~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~ 229 (395)
|...... ..+..+.+..... .. ++ ...+...+..+..--.+.+...+.-| ..|..+++|++|+|++|+
T Consensus 208 wla~~~a--~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 208 WLADDLA--MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred hhhhHHh--hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 1000000 0000011100000 00 00 00011111111111112222333333 568999999999999999
Q ss_pred CcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCC-cccCccccccccCC-CCCCC
Q 043041 230 LTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSG-TQLQSFNASTYAGN-ELCGL 304 (395)
Q Consensus 230 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~l~~l~~~~~~gN-~lc~~ 304 (395)
++++-+.+|.+...++.|.|..|++...-...|..+..|+.|+|.+|+++..-|.. ..+..+..+.+.+| ..|.+
T Consensus 286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC 362 (498)
T KOG4237|consen 286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC 362 (498)
T ss_pred cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc
Confidence 99999999999999999999999998666678999999999999999999887754 34555666778888 55654
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=3.3e-20 Score=184.31 Aligned_cols=241 Identities=25% Similarity=0.321 Sum_probs=148.4
Q ss_pred EEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCc
Q 043041 2 YLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNA 81 (395)
Q Consensus 2 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~ 81 (395)
.||+++|.++ .+|..+. ++|+.|++.+|+++. +|.. .++|++|+|++|+++ .+|.. .++|+.|++++|.
T Consensus 205 ~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 205 VLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred EEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCCC---CCCCcEEEecCCccC-cccCc---ccccceeeccCCc
Confidence 6899999998 6888776 489999999999984 5642 578999999999998 45543 3567777787777
Q ss_pred ccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCcccccccc-----------------
Q 043041 82 LSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTA----------------- 144 (395)
Q Consensus 82 l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~----------------- 144 (395)
+. .+|.. ..+|+.|++++|+++. +|.. .++|+.|++++|++++. |.....+..
T Consensus 274 L~-~Lp~l----p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~L-p~lp~~L~~L~Ls~N~L~~LP~lp~~ 343 (788)
T PRK15387 274 LT-HLPAL----PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PALPSELCKLWAYNNQLTSLPTLPSG 343 (788)
T ss_pred hh-hhhhc----hhhcCEEECcCCcccc-cccc---ccccceeECCCCccccC-CCCcccccccccccCccccccccccc
Confidence 76 66642 3456666777776663 3332 35566667766666653 222222221
Q ss_pred chhccccccccCccccccCCccccCCCCccccceEEEeecccc-ccccccCcccEEECcCCCCccCCChhhhcCcCCCEE
Q 043041 145 MAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQY-QYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAM 223 (395)
Q Consensus 145 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 223 (395)
|+.|+... +.+...+........+....... ........|+.|++++|++++ +|.. .++|+.|
T Consensus 344 Lq~LdLS~------------N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~L 407 (788)
T PRK15387 344 LQELSVSD------------NQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LPVL---PSELKEL 407 (788)
T ss_pred cceEecCC------------CccCCCCCCCcccceehhhccccccCcccccccceEEecCCcccC-CCCc---ccCCCEE
Confidence 22222111 11111110000000111111000 001123467888888888883 5532 3578888
Q ss_pred eCCCCcCcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCC
Q 043041 224 NLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPS 284 (395)
Q Consensus 224 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 284 (395)
++++|.++ .+|.. ..+|+.|++++|+++ .+|..+..+++|+.|+|++|+|++.+|.
T Consensus 408 dLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 408 MVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred EccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 88888887 46653 346778888888887 6788888888888888888888877664
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=1.4e-19 Score=192.11 Aligned_cols=287 Identities=20% Similarity=0.199 Sum_probs=140.9
Q ss_pred EEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCc
Q 043041 2 YLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNA 81 (395)
Q Consensus 2 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~ 81 (395)
.|++.++.++ .+|..| ...+|+.|++++|++. .++..+..+++|+.|+|+++.....+|. +..+++|++|++++|.
T Consensus 593 ~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~ 668 (1153)
T PLN03210 593 LLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCS 668 (1153)
T ss_pred EEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCC
Confidence 4556666665 555555 3566667777666665 4556666666677777766543334553 5566666666666665
Q ss_pred ccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccccc
Q 043041 82 LSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWF 161 (395)
Q Consensus 82 l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~ 161 (395)
....+|..+. .+++|+.|++++|.....+|..+ ++++|+.|++++|......|....++ +.+......... .
T Consensus 669 ~L~~lp~si~-~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL---~~L~L~~n~i~~---l 740 (1153)
T PLN03210 669 SLVELPSSIQ-YLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNI---SWLDLDETAIEE---F 740 (1153)
T ss_pred Cccccchhhh-ccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCc---CeeecCCCcccc---c
Confidence 4446666655 46666666666654333455443 56666666666665444444332222 222211111000 0
Q ss_pred cCCccccCCC-CccccceE--E--EeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCc
Q 043041 162 AGGLQLTTAG-DFFSGQAV--L--TWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITP 236 (395)
Q Consensus 162 ~~~~~~~~~~-~~~~~~~~--~--~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 236 (395)
.....++... ........ + ......+.....+++|+.|++++|...+.+|..++.+++|+.|++++|...+.+|.
T Consensus 741 P~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~ 820 (1153)
T PLN03210 741 PSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT 820 (1153)
T ss_pred cccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC
Confidence 0000000000 00000000 0 00000000011223455555555544444555555555555555555432223333
Q ss_pred ccCCC---------------------CCCCEEECcCCccCccCcccccCCCCCCEEeCcC-CcCcccCCCCcccCccccc
Q 043041 237 KIGQL---------------------KSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSY-NNLSGKIPSGTQLQSFNAS 294 (395)
Q Consensus 237 ~~~~l---------------------~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~l~~l~~~ 294 (395)
.+ .+ ++|+.|+|++|.++ .+|..+..+++|+.|++++ |++.+..+....+..+..+
T Consensus 821 ~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L 898 (1153)
T PLN03210 821 GI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETV 898 (1153)
T ss_pred CC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCee
Confidence 32 23 45666666666665 5666677777777777776 3455433333556666666
Q ss_pred cccCC-CCC
Q 043041 295 TYAGN-ELC 302 (395)
Q Consensus 295 ~~~gN-~lc 302 (395)
++.++ .|.
T Consensus 899 ~l~~C~~L~ 907 (1153)
T PLN03210 899 DFSDCGALT 907 (1153)
T ss_pred ecCCCcccc
Confidence 67666 554
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=7e-23 Score=198.38 Aligned_cols=262 Identities=27% Similarity=0.367 Sum_probs=200.6
Q ss_pred EEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCc
Q 043041 2 YLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNA 81 (395)
Q Consensus 2 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~ 81 (395)
.|+.++|.++...+. .--.+|+++|+++|+++ .+|+.++.+.+|+.++..+|+++ .+|..+...++|+.|++..|.
T Consensus 223 ~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~ne 298 (1081)
T KOG0618|consen 223 ALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNE 298 (1081)
T ss_pred eeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhh
Confidence 467777877733322 22468899999999998 46788899999999999999997 788888889999999999999
Q ss_pred ccccCchhHhhcCCCccEEEccceeeccccCccCCCCCC-ccEEEcccCCCCCCCCccccccccchhccccccccCcccc
Q 043041 82 LSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPF-IQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYW 160 (395)
Q Consensus 82 l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 160 (395)
+. .+|.... ++..|++|+|..|++....+..+..... |+.|+.+.|.+.....-.=.....|+.+.......
T Consensus 299 l~-yip~~le-~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L----- 371 (1081)
T KOG0618|consen 299 LE-YIPPFLE-GLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL----- 371 (1081)
T ss_pred hh-hCCCccc-ccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc-----
Confidence 98 8888876 5889999999999988554444444443 77788888887754321112233343333211111
Q ss_pred ccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCC
Q 043041 161 FAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQ 240 (395)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 240 (395)
.......+....+|+.|+|++|++.......+.++..|+.|+||+|+++ .+|..+..
T Consensus 372 ----------------------td~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~ 428 (1081)
T KOG0618|consen 372 ----------------------TDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVAN 428 (1081)
T ss_pred ----------------------cccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHh
Confidence 2233445667889999999999999555566889999999999999999 88999999
Q ss_pred CCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcc-cCCCCcccCccccccccCC
Q 043041 241 LKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSG-KIPSGTQLQSFNASTYAGN 299 (395)
Q Consensus 241 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~l~~l~~~~~~gN 299 (395)
++.|++|...+|++. ..| .+..++.|+++|+|.|+++. .+|.....++|+.+++.||
T Consensus 429 ~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 429 LGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGN 486 (1081)
T ss_pred hhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCC
Confidence 999999999999998 677 68899999999999999986 4555544578999999999
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=3.8e-20 Score=184.86 Aligned_cols=242 Identities=25% Similarity=0.398 Sum_probs=179.1
Q ss_pred EEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCc
Q 043041 2 YLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNA 81 (395)
Q Consensus 2 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~ 81 (395)
.|++++++++ .+|..+. ++|+.|+|++|+++ .+|..+. ++|++|++++|+++ .+|..+. .+|+.|++++|.
T Consensus 182 ~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 182 ELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINR 252 (754)
T ss_pred EEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCc
Confidence 6899999998 5787664 58999999999999 5666554 58999999999999 5676554 479999999999
Q ss_pred ccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccccc
Q 043041 82 LSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWF 161 (395)
Q Consensus 82 l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~ 161 (395)
+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|++++. |..+. ..|..+.........
T Consensus 253 L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~L-P~~lp--~sL~~L~Ls~N~Lt~---- 318 (754)
T PRK15370 253 IT-ELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTL-PAHLP--SGITHLNVQSNSLTA---- 318 (754)
T ss_pred cC-cCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccC-cccch--hhHHHHHhcCCcccc----
Confidence 98 9998875 58999999999998 5676654 5899999999999864 43332 234443322111100
Q ss_pred cCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCC
Q 043041 162 AGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQL 241 (395)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 241 (395)
.+. ...++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+.
T Consensus 319 ------------------------LP~--~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp-- 366 (754)
T PRK15370 319 ------------------------LPE--TLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP-- 366 (754)
T ss_pred ------------------------CCc--cccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--
Confidence 000 112568999999999984 676553 78999999999998 5776653
Q ss_pred CCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCC-----cccCccccccccCCCCC
Q 043041 242 KSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSG-----TQLQSFNASTYAGNELC 302 (395)
Q Consensus 242 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-----~~l~~l~~~~~~gN~lc 302 (395)
++|+.|+|++|+++ .+|..+. ..|+.|++++|+++ .+|.. .....+..+++.+|.+.
T Consensus 367 ~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 367 PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 68999999999998 5666553 36899999999998 44542 12344556677788654
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=3.3e-20 Score=185.31 Aligned_cols=224 Identities=27% Similarity=0.377 Sum_probs=169.9
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
+.|+|++|+|+ .+|..+. ++|+.|++++|+++ .+|..+. .+|+.|+|++|.++ .+|..+. .+|++|++++|
T Consensus 202 ~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 202 TTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHN 272 (754)
T ss_pred cEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCC
Confidence 46899999999 5776554 58999999999998 5676554 57999999999999 6777664 58999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCcccc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYW 160 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 160 (395)
+++ .+|..++ ++|+.|++++|++++ +|..+. ++|+.|++++|.++.. |..+. ++|+.+....+....
T Consensus 273 ~L~-~LP~~l~---~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~L-P~~l~--~sL~~L~Ls~N~Lt~--- 339 (754)
T PRK15370 273 KIS-CLPENLP---EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTAL-PETLP--PGLKTLEAGENALTS--- 339 (754)
T ss_pred ccC-ccccccC---CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccC-Ccccc--ccceeccccCCcccc---
Confidence 999 8898764 589999999999984 555443 5799999999999864 43222 344444322211110
Q ss_pred ccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCC
Q 043041 161 FAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQ 240 (395)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 240 (395)
.+.. -.++|+.|++++|+++ .+|..+ .+.|+.|+|++|+++ .+|..+.
T Consensus 340 -------------------------LP~~--l~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~- 387 (754)
T PRK15370 340 -------------------------LPAS--LPPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP- 387 (754)
T ss_pred -------------------------CChh--hcCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH-
Confidence 0000 1257899999999998 677665 368999999999999 5676654
Q ss_pred CCCCCEEECcCCccCccCccc----ccCCCCCCEEeCcCCcCcc
Q 043041 241 LKSLDFLDLSRNRFFGGIPSS----LSLLSGLSVMDLSYNNLSG 280 (395)
Q Consensus 241 l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~Ls~N~l~~ 280 (395)
..|+.|++++|+++ .+|.. +..++.+..+++.+|+++.
T Consensus 388 -~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 388 -AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred -HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 47999999999998 55554 3455889999999999973
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.80 E-value=1.5e-18 Score=184.32 Aligned_cols=275 Identities=19% Similarity=0.182 Sum_probs=191.3
Q ss_pred ccccCCCCccCCC-CCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCch
Q 043041 10 LSGRLPDCWPLFD-RLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPK 88 (395)
Q Consensus 10 l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~ 88 (395)
+...+|..|..++ +|+.|++.++.+. .+|..| ...+|+.|++.+|.+. .++..+..+++|+.|+++++...+.+|.
T Consensus 576 ~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ 652 (1153)
T PLN03210 576 VRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD 652 (1153)
T ss_pred ceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc
Confidence 4445788787765 6999999999987 678877 5789999999999998 6788889999999999998865558885
Q ss_pred hHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccccccCCcccc
Q 043041 89 WIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLT 168 (395)
Q Consensus 89 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~ 168 (395)
+. .+++|++|++++|.....+|..+..+++|+.|++++|..-..+|..+ ++++|+.+....+.....+...
T Consensus 653 -ls-~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~------ 723 (1153)
T PLN03210 653 -LS-MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI------ 723 (1153)
T ss_pred -cc-cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc------
Confidence 43 58999999999988777899999999999999999986656667655 5677776654333221111000
Q ss_pred CCCCccccceEEEeecc----ccccccccCcccEEECcCCCC-------ccCCChhhhcCcCCCEEeCCCCcCcccCCcc
Q 043041 169 TAGDFFSGQAVLTWKGS----QYQYQNTLGLVKMLDLSSNKL-------GGEVPEEIMDLVGLIAMNLSRNNLTGQITPK 237 (395)
Q Consensus 169 ~~~~~~~~~~~~~~~~~----~~~~~~~l~~L~~L~Ls~n~l-------~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 237 (395)
......+.+.+. .+.. -.+++|+.|++.++.. ....+......++|+.|+|++|...+.+|..
T Consensus 724 -----~~nL~~L~L~~n~i~~lP~~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s 797 (1153)
T PLN03210 724 -----STNISWLDLDETAIEEFPSN-LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS 797 (1153)
T ss_pred -----cCCcCeeecCCCcccccccc-ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh
Confidence 000001111111 1111 1345566666654321 1112222334568889999998877788999
Q ss_pred cCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCCcccCccccccccCCCCCCCC
Q 043041 238 IGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSGTQLQSFNASTYAGNELCGLP 305 (395)
Q Consensus 238 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~l~~l~~~~~~gN~lc~~~ 305 (395)
++++++|+.|++++|...+.+|... ++++|+.|++++|.....+|.. ..++..+++.+|.+...|
T Consensus 798 i~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~~iP 862 (1153)
T PLN03210 798 IQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIEEVP 862 (1153)
T ss_pred hhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCCCccCh
Confidence 9999999999999886555777765 7889999999988665566643 356667777777655444
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=2.8e-21 Score=187.39 Aligned_cols=225 Identities=26% Similarity=0.348 Sum_probs=172.9
Q ss_pred CCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEE
Q 043041 46 PNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILD 125 (395)
Q Consensus 46 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 125 (395)
.+|+++++++|+++ .+|+++..+.+|+.++..+|++. .+|..++ ...+|+.|.+..|.+. .+|....+++.|++|+
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~-~~~~L~~l~~~~nel~-yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRIS-RITSLVSLSAAYNELE-YIPPFLEGLKSLRTLD 316 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHh-hhhhHHHHHhhhhhhh-hCCCcccccceeeeee
Confidence 46788888888888 56688888888888888888887 8888887 4888888888888887 6677778888899999
Q ss_pred cccCCCCCCCCcccccccc-chhccccccccCccccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCC
Q 043041 126 LSSNNIPGIIPKCFNNFTA-MAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSN 204 (395)
Q Consensus 126 l~~n~l~~~~~~~~~~l~~-L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n 204 (395)
+..|++....+..+.-... +..+....... +..+ ...-..++.|+.|++.+|
T Consensus 317 L~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l------------~~lp---------------~~~e~~~~~Lq~LylanN 369 (1081)
T KOG0618|consen 317 LQSNNLPSLPDNFLAVLNASLNTLNVSSNKL------------STLP---------------SYEENNHAALQELYLANN 369 (1081)
T ss_pred ehhccccccchHHHhhhhHHHHHHhhhhccc------------cccc---------------cccchhhHHHHHHHHhcC
Confidence 9998887544433322221 22222111111 0000 011124566899999999
Q ss_pred CCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCC
Q 043041 205 KLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPS 284 (395)
Q Consensus 205 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 284 (395)
.++...-+.+.+.++|+.|+|++|++.......+.++..|+.|+||+|+++ .+|..+..++.|++|...+|++. ..|+
T Consensus 370 ~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe 447 (1081)
T KOG0618|consen 370 HLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPE 447 (1081)
T ss_pred cccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-echh
Confidence 999888888999999999999999998444455789999999999999999 78899999999999999999999 4568
Q ss_pred CcccCccccccccCCCCCC
Q 043041 285 GTQLQSFNASTYAGNELCG 303 (395)
Q Consensus 285 ~~~l~~l~~~~~~gN~lc~ 303 (395)
..++..++.+|++.|.|..
T Consensus 448 ~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 448 LAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred hhhcCcceEEecccchhhh
Confidence 8899999999999996653
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.77 E-value=7.6e-21 Score=150.11 Aligned_cols=85 Identities=34% Similarity=0.593 Sum_probs=56.1
Q ss_pred CCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccE
Q 043041 44 SLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQI 123 (395)
Q Consensus 44 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 123 (395)
++.+++.|-|++|+++ .+|..+..+.+|+.|++++|+++ ++|..+. .+++|++|+++-|++. ..|..|+.++.|+.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhhh
Confidence 4555666666777766 55556666777777777777776 6666665 3667777776666665 55666666666666
Q ss_pred EEcccCCCC
Q 043041 124 LDLSSNNIP 132 (395)
Q Consensus 124 L~l~~n~l~ 132 (395)
||+.+|++.
T Consensus 107 ldltynnl~ 115 (264)
T KOG0617|consen 107 LDLTYNNLN 115 (264)
T ss_pred hhccccccc
Confidence 666666654
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.77 E-value=6e-21 Score=150.69 Aligned_cols=165 Identities=30% Similarity=0.511 Sum_probs=147.1
Q ss_pred ccCCCCCCEEECCCCcccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccc
Q 043041 66 LQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAM 145 (395)
Q Consensus 66 ~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 145 (395)
+..+.+.+.|.+|+|+++ .+|+.+.+ +.+|+.|++.+|+++ ..|..++.++.|+.|+++.|++. ..|..|+.++.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~-l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAE-LKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHH-hhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 446778889999999999 99999985 999999999999998 77889999999999999999997 677777665554
Q ss_pred hhccccccccCccccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCcc-CCChhhhcCcCCCEEe
Q 043041 146 AQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGG-EVPEEIMDLVGLIAMN 224 (395)
Q Consensus 146 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~ 224 (395)
+.|||++|+++. ..|..|..++.|+.|+
T Consensus 105 ---------------------------------------------------evldltynnl~e~~lpgnff~m~tlraly 133 (264)
T KOG0617|consen 105 ---------------------------------------------------EVLDLTYNNLNENSLPGNFFYMTTLRALY 133 (264)
T ss_pred ---------------------------------------------------hhhhccccccccccCCcchhHHHHHHHHH
Confidence 788899988875 5788999999999999
Q ss_pred CCCCcCcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCCcc
Q 043041 225 LSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSGTQ 287 (395)
Q Consensus 225 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 287 (395)
|+.|.+. .+|..++.+++|+.|.+..|.+. .+|..++.++.|+.|++.+|+++-..|+..+
T Consensus 134 l~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 134 LGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred hcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence 9999998 89999999999999999999998 7899999999999999999999977776433
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=9.7e-20 Score=168.28 Aligned_cols=230 Identities=25% Similarity=0.328 Sum_probs=149.9
Q ss_pred EEEccCCccc-ccCCCCccCCCCCCEEECCCCccccc----CCCCCCCCCCccEEecccccCcc------cCchhccCCC
Q 043041 2 YLDLSNNLLS-GRLPDCWPLFDRLRILDLANNNFSGK----IPDSMGSLPNIQILSLHNNSLTG------ELPSSLQNCS 70 (395)
Q Consensus 2 ~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~------~~p~~~~~l~ 70 (395)
.|+|..+.++ +..+..+..+++|+.|+++++.+++. ++..+...+.|+.|+++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 5889999997 34555567788899999999998542 55566778889999999998772 3445677889
Q ss_pred CCCEEECCCCcccccCchhHhhcCCC---ccEEEccceeecc----ccCccCCCC-CCccEEEcccCCCCCCCCcccccc
Q 043041 71 LLILMDLGRNALSGEIPKWIGESLPK---LIVLSLMSNKFHG----IIPFQLCYL-PFIQILDLSSNNIPGIIPKCFNNF 142 (395)
Q Consensus 71 ~L~~L~ls~n~l~~~ip~~~~~~l~~---L~~L~L~~n~l~~----~~p~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~l 142 (395)
+|++|++++|.+.+..+..+. .+.+ |++|++++|++.+ .+...+..+ ++|+.|++++|.+++.....+.
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~-~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~-- 158 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLE-SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA-- 158 (319)
T ss_pred ceeEEEccCCCCChhHHHHHH-HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH--
Confidence 999999999999755555554 3544 9999999998873 233445666 8999999999998853221111
Q ss_pred ccchhccccccccCccccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccC----CChhhhcCc
Q 043041 143 TAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGE----VPEEIMDLV 218 (395)
Q Consensus 143 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~ 218 (395)
..+..+++|+.|++++|.+++. ++..+..++
T Consensus 159 ---------------------------------------------~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~ 193 (319)
T cd00116 159 ---------------------------------------------KALRANRDLKELNLANNGIGDAGIRALAEGLKANC 193 (319)
T ss_pred ---------------------------------------------HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCC
Confidence 0112233456666666666532 223344445
Q ss_pred CCCEEeCCCCcCccc----CCcccCCCCCCCEEECcCCccCccCccccc-----CCCCCCEEeCcCCcCc
Q 043041 219 GLIAMNLSRNNLTGQ----ITPKIGQLKSLDFLDLSRNRFFGGIPSSLS-----LLSGLSVMDLSYNNLS 279 (395)
Q Consensus 219 ~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~Ls~N~l~ 279 (395)
+|+.|++++|.+++. ++..+..+++|+.|++++|.+++.....+. ..+.|+.|++++|.++
T Consensus 194 ~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 194 NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred CCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 666666666666532 233345566666666666666542222111 1356666666666664
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.74 E-value=2.6e-17 Score=163.89 Aligned_cols=241 Identities=23% Similarity=0.278 Sum_probs=146.3
Q ss_pred CCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCCCccEEE
Q 043041 22 DRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLS 101 (395)
Q Consensus 22 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~ 101 (395)
..-..|+|+++.++ .+|+.+. ++|+.|++++|+++ .+|. .+++|++|++++|+++ .+|.. .++|+.|+
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL----PPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc----ccccceee
Confidence 44678999999998 6888775 48999999999999 5664 3589999999999999 88853 57899999
Q ss_pred ccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccccccCCccccCCCCccccceEEE
Q 043041 102 LMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLT 181 (395)
Q Consensus 102 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (395)
+++|.+.. +|.. ..+|+.|++++|+++.. |... ++|+.++............. . ....+.
T Consensus 269 Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~L-P~~p---~~L~~LdLS~N~L~~Lp~lp------~------~L~~L~ 328 (788)
T PRK15387 269 IFSNPLTH-LPAL---PSGLCKLWIFGNQLTSL-PVLP---PGLQELSVSDNQLASLPALP------S------ELCKLW 328 (788)
T ss_pred ccCCchhh-hhhc---hhhcCEEECcCCccccc-cccc---cccceeECCCCccccCCCCc------c------cccccc
Confidence 99999984 4443 36788999999999854 4333 44555554333222110000 0 000011
Q ss_pred eeccccccc-cccCcccEEECcCCCCccCCChhhh-----------------cCcCCCEEeCCCCcCcccCCcccCCCCC
Q 043041 182 WKGSQYQYQ-NTLGLVKMLDLSSNKLGGEVPEEIM-----------------DLVGLIAMNLSRNNLTGQITPKIGQLKS 243 (395)
Q Consensus 182 ~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~p~~~~-----------------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 243 (395)
+.+.....+ ....+|+.|+|++|++++ +|.... ...+|+.|++++|.++ .+|.. .++
T Consensus 329 Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~ 403 (788)
T PRK15387 329 AYNNQLTSLPTLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSE 403 (788)
T ss_pred cccCccccccccccccceEecCCCccCC-CCCCCcccceehhhccccccCcccccccceEEecCCccc-CCCCc---ccC
Confidence 111000000 011356667777776663 332111 0124555555555555 23332 245
Q ss_pred CCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCC-cccCccccccccCCCCCCC
Q 043041 244 LDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSG-TQLQSFNASTYAGNELCGL 304 (395)
Q Consensus 244 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~l~~l~~~~~~gN~lc~~ 304 (395)
|+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|.. ..+..+..+++.+|.+++.
T Consensus 404 L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 404 LKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred CCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence 666666666665 34432 234666777777776 44543 4566777788888877754
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=2.1e-19 Score=166.04 Aligned_cols=233 Identities=25% Similarity=0.228 Sum_probs=169.7
Q ss_pred CEEEccCCccccc----CCCCccCCCCCCEEECCCCcccc------cCCCCCCCCCCccEEecccccCcccCchhccCCC
Q 043041 1 MYLDLSNNLLSGR----LPDCWPLFDRLRILDLANNNFSG------KIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCS 70 (395)
Q Consensus 1 ~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~------~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 70 (395)
++|+++++.++.. ++..+...+.|+.|+++++.+.+ .++..+..+++|+.|++++|.+.+..+..+..+.
T Consensus 26 ~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 105 (319)
T cd00116 26 QVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLL 105 (319)
T ss_pred cEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHh
Confidence 4789999998543 55566788889999999998872 3445677789999999999999876666666666
Q ss_pred C---CCEEECCCCcccc----cCchhHhhcC-CCccEEEccceeeccc----cCccCCCCCCccEEEcccCCCCCCCCcc
Q 043041 71 L---LILMDLGRNALSG----EIPKWIGESL-PKLIVLSLMSNKFHGI----IPFQLCYLPFIQILDLSSNNIPGIIPKC 138 (395)
Q Consensus 71 ~---L~~L~ls~n~l~~----~ip~~~~~~l-~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~~~~~ 138 (395)
+ |++|++++|++.+ .+...+. .+ ++|+.|++++|.+++. ++..+..++.|++|++++|.+++.....
T Consensus 106 ~~~~L~~L~ls~~~~~~~~~~~l~~~l~-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 184 (319)
T cd00116 106 RSSSLQELKLNNNGLGDRGLRLLAKGLK-DLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRA 184 (319)
T ss_pred ccCcccEEEeeCCccchHHHHHHHHHHH-hCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHH
Confidence 5 9999999999873 2223333 35 8999999999998832 3445677789999999999987521111
Q ss_pred ccccccchhccccccccCccccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCC----Chhh
Q 043041 139 FNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEV----PEEI 214 (395)
Q Consensus 139 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----p~~~ 214 (395)
+. ..+...++|+.|++++|.+++.. +..+
T Consensus 185 l~-----------------------------------------------~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~ 217 (319)
T cd00116 185 LA-----------------------------------------------EGLKANCNLEVLDLNNNGLTDEGASALAETL 217 (319)
T ss_pred HH-----------------------------------------------HHHHhCCCCCEEeccCCccChHHHHHHHHHh
Confidence 10 01122356789999999887433 3445
Q ss_pred hcCcCCCEEeCCCCcCcccCCcccC-----CCCCCCEEECcCCccCc----cCcccccCCCCCCEEeCcCCcCccc
Q 043041 215 MDLVGLIAMNLSRNNLTGQITPKIG-----QLKSLDFLDLSRNRFFG----GIPSSLSLLSGLSVMDLSYNNLSGK 281 (395)
Q Consensus 215 ~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~ 281 (395)
..+++|+.|++++|.+++.....+. ..+.|++|++++|.++. .+...+..+++|+.+++++|.++..
T Consensus 218 ~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 6778899999999988753333322 24789999999998872 2344566778899999999998743
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.68 E-value=1.6e-16 Score=158.20 Aligned_cols=117 Identities=38% Similarity=0.670 Sum_probs=105.4
Q ss_pred cccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCc
Q 043041 195 LVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLS 274 (395)
Q Consensus 195 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 274 (395)
.++.|+|++|.+.|.+|..+..+++|+.|+|++|.++|.+|..++.+++|+.|+|++|++++.+|+.++.+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccCCCCc--ccCccccccccCC-CCCCCCCCCCCC
Q 043041 275 YNNLSGKIPSGT--QLQSFNASTYAGN-ELCGLPLPNKCP 311 (395)
Q Consensus 275 ~N~l~~~~p~~~--~l~~l~~~~~~gN-~lc~~~~~~~c~ 311 (395)
+|+++|.+|... .+..+..+++.+| .+|+.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999752 2234556789999 899877655664
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.48 E-value=4.3e-16 Score=144.40 Aligned_cols=139 Identities=27% Similarity=0.407 Sum_probs=106.9
Q ss_pred EEccCCcccccCCCCc--cCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 3 LDLSNNLLSGRLPDCW--PLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 3 L~Ls~n~l~~~~p~~~--~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
|.|++-+++ ..|..- -.+..-...||+.|++. .+|..+..+-.|+.+.|..|.+. .+|..+.++..|++||++.|
T Consensus 55 l~Ls~rrlk-~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~N 131 (722)
T KOG0532|consen 55 LLLSGRRLK-EFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSN 131 (722)
T ss_pred cccccchhh-cCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccc
Confidence 445555555 344322 23444567888999988 78888888888999999999988 78888999999999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhcc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEK 149 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ 149 (395)
+++ .+|..++ .--|+.|.+++|+++ .+|..++.++.|..||.+.|.+.. +|..++.+.+|+.+.
T Consensus 132 qlS-~lp~~lC--~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 132 QLS-HLPDGLC--DLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLN 195 (722)
T ss_pred hhh-cCChhhh--cCcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHH
Confidence 998 8898887 456899999999988 677788888889999999998874 555666666664443
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.47 E-value=1.9e-15 Score=140.19 Aligned_cols=188 Identities=28% Similarity=0.423 Sum_probs=122.0
Q ss_pred EEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcc
Q 043041 3 LDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNAL 82 (395)
Q Consensus 3 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l 82 (395)
.||+.|++. .+|..+..+..|+.+.|..|.+. .+|.+++++..|++|||+.|+++ .+|..++.|+ |+.|-+++|++
T Consensus 80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCcc
Confidence 467777776 67777777777777777777776 56777777777777777777776 6666666555 67777777777
Q ss_pred cccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCcccccc
Q 043041 83 SGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFA 162 (395)
Q Consensus 83 ~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~ 162 (395)
+ .+|..++ .++.|..|+.+.|.+. .+|..++.+.+|+.|.+..|.+...++ .+..++
T Consensus 156 ~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~-El~~Lp------------------- 212 (722)
T KOG0532|consen 156 T-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPE-ELCSLP------------------- 212 (722)
T ss_pred c-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCH-HHhCCc-------------------
Confidence 6 7777776 5677777777777776 456666777777777777776664322 221111
Q ss_pred CCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCC--
Q 043041 163 GGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQ-- 240 (395)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-- 240 (395)
|..||+|.|+++ .+|..|.++.+|++|-|.+|.++ ..|..+..
T Consensus 213 ---------------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kG 257 (722)
T KOG0532|consen 213 ---------------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKG 257 (722)
T ss_pred ---------------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhcc
Confidence 456777777777 67777777777777777777776 45544422
Q ss_pred -CCCCCEEECcCC
Q 043041 241 -LKSLDFLDLSRN 252 (395)
Q Consensus 241 -l~~L~~L~Ls~N 252 (395)
..--++|+.+-+
T Consensus 258 kVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 258 KVHIFKYLSTQAC 270 (722)
T ss_pred ceeeeeeecchhc
Confidence 223345555555
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.47 E-value=6.9e-14 Score=133.07 Aligned_cols=198 Identities=34% Similarity=0.471 Sum_probs=135.7
Q ss_pred EEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCC-CCCEEECCCCcccccCchhHhhcCCCccEEEccc
Q 043041 26 ILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCS-LLILMDLGRNALSGEIPKWIGESLPKLIVLSLMS 104 (395)
Q Consensus 26 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L~~ 104 (395)
.+++..|.+... ...+..++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..+. .+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhh-ccccccccccCC
Confidence 577777776422 233455577888888888888 5666666664 8888888888887 7776665 488888888888
Q ss_pred eeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccccccCCccccCCCCccccceEEEeec
Q 043041 105 NKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKG 184 (395)
Q Consensus 105 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (395)
|++. .+|...+..++|+.|++++|+++...+. ..
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~-~~-------------------------------------------- 206 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPE-IE-------------------------------------------- 206 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccccCchh-hh--------------------------------------------
Confidence 8887 4455555778888888888888754332 11
Q ss_pred cccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCccCcccccC
Q 043041 185 SQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSL 264 (395)
Q Consensus 185 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 264 (395)
.+..|+.+++++|.+. ..+..+..+..+..+.+.+|++. ..+..++.++.+++|++++|+++. ++. +..
T Consensus 207 -------~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~ 275 (394)
T COG4886 207 -------LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGS 275 (394)
T ss_pred -------hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc-ccc-ccc
Confidence 1223566777777544 45566777777777777777776 446667777777888888887773 333 677
Q ss_pred CCCCCEEeCcCCcCcccCCC
Q 043041 265 LSGLSVMDLSYNNLSGKIPS 284 (395)
Q Consensus 265 l~~L~~L~Ls~N~l~~~~p~ 284 (395)
+.+++.|++++|.++...|.
T Consensus 276 ~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 276 LTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cCccCEEeccCccccccchh
Confidence 77777888887777765554
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.44 E-value=1.3e-13 Score=131.17 Aligned_cols=198 Identities=36% Similarity=0.496 Sum_probs=123.9
Q ss_pred EEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCC-CccEEecccccCcccCchhccCCCCCCEEECCCCc
Q 043041 3 LDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLP-NIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNA 81 (395)
Q Consensus 3 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~ 81 (395)
++++.|.+.. ....+..++.++.|++.+|.++ .++...+.+. +|+.|++++|.+. .+|..+..+++|+.|++++|+
T Consensus 98 l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 98 LDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 5555666532 2233445567777777777777 4555555553 7777777777777 555567777777777777777
Q ss_pred ccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccccc
Q 043041 82 LSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWF 161 (395)
Q Consensus 82 l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~ 161 (395)
+. .+|.... .+++|+.|++++|++. .+|........|++|.+++|.+. ..+..+.
T Consensus 175 l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~--------------------- 229 (394)
T COG4886 175 LS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLS--------------------- 229 (394)
T ss_pred hh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhh---------------------
Confidence 77 7776654 3677777777777776 44544445555777777777422 1111221
Q ss_pred cCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCC
Q 043041 162 AGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQL 241 (395)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 241 (395)
.+.++..+.+.+|++. ..+..++.++.++.|++++|.++ .++. ++.+
T Consensus 230 ------------------------------~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~ 276 (394)
T COG4886 230 ------------------------------NLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSL 276 (394)
T ss_pred ------------------------------hcccccccccCCceee-eccchhccccccceecccccccc-cccc-cccc
Confidence 2333455556666665 33566677777777777777776 3333 6777
Q ss_pred CCCCEEECcCCccCccCccc
Q 043041 242 KSLDFLDLSRNRFFGGIPSS 261 (395)
Q Consensus 242 ~~L~~L~Ls~N~l~~~~p~~ 261 (395)
.+++.|++++|.++...|..
T Consensus 277 ~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 277 TNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred CccCEEeccCccccccchhh
Confidence 77777777777777555543
No 28
>PLN03150 hypothetical protein; Provisional
Probab=99.41 E-value=4.7e-13 Score=133.45 Aligned_cols=110 Identities=29% Similarity=0.455 Sum_probs=93.3
Q ss_pred CCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCCCccEEEc
Q 043041 23 RLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSL 102 (395)
Q Consensus 23 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L 102 (395)
.++.|+|++|.+.|.+|..++.+++|+.|+|++|.++|.+|..+..+++|+.|+|++|.++|.+|..+. .+++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~-~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG-QLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh-cCCCCCEEEC
Confidence 377889999999888898898999999999999999888888889999999999999999888888887 5899999999
Q ss_pred cceeeccccCccCCCC-CCccEEEcccCCCCC
Q 043041 103 MSNKFHGIIPFQLCYL-PFIQILDLSSNNIPG 133 (395)
Q Consensus 103 ~~n~l~~~~p~~l~~l-~~L~~L~l~~n~l~~ 133 (395)
++|+++|.+|..+..+ .++..+++.+|....
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCcccc
Confidence 9999988888887653 466788888886543
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.1e-13 Score=124.89 Aligned_cols=210 Identities=24% Similarity=0.240 Sum_probs=139.1
Q ss_pred cCCCCCCEEECCCCcccccCC--CCCCCCCCccEEecccccCcc--cCchhccCCCCCCEEECCCCcccccCchhHhhcC
Q 043041 19 PLFDRLRILDLANNNFSGKIP--DSMGSLPNIQILSLHNNSLTG--ELPSSLQNCSLLILMDLGRNALSGEIPKWIGESL 94 (395)
Q Consensus 19 ~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l 94 (395)
.++++|+...|.+..+. ..+ .....|++++.|||++|-+.. .+......+++|+.|+++.|++.-.........+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 46778888888887765 222 345668888888888887763 2334456788888888888887633333333346
Q ss_pred CCccEEEccceeecc-ccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccccccCCccccCCCCc
Q 043041 95 PKLIVLSLMSNKFHG-IIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDF 173 (395)
Q Consensus 95 ~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (395)
++|+.|.++.|.++. .+...+..+|+|..|++..|..........
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~---------------------------------- 242 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATST---------------------------------- 242 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchh----------------------------------
Confidence 778888888887762 222334567788888888775322211111
Q ss_pred cccceEEEeeccccccccccCcccEEECcCCCCccCC-ChhhhcCcCCCEEeCCCCcCcccC-Ccc-----cCCCCCCCE
Q 043041 174 FSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEV-PEEIMDLVGLIAMNLSRNNLTGQI-TPK-----IGQLKSLDF 246 (395)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~-p~~-----~~~l~~L~~ 246 (395)
..+..|+.|||++|.+-... -...+.++.|..|+++.+.++..- |+. ...+++|++
T Consensus 243 -----------------~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~ 305 (505)
T KOG3207|consen 243 -----------------KILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEY 305 (505)
T ss_pred -----------------hhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccccccee
Confidence 12445688999999886322 245678899999999999887432 333 356789999
Q ss_pred EECcCCccCccC-cccccCCCCCCEEeCcCCcCcc
Q 043041 247 LDLSRNRFFGGI-PSSLSLLSGLSVMDLSYNNLSG 280 (395)
Q Consensus 247 L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~ 280 (395)
|+++.|++.+.- -..+..+++|+.|.+..|.++.
T Consensus 306 L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 306 LNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred eecccCccccccccchhhccchhhhhhcccccccc
Confidence 999999996321 1245566778888888888764
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.31 E-value=1.8e-12 Score=106.84 Aligned_cols=140 Identities=26% Similarity=0.382 Sum_probs=52.1
Q ss_pred EccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCC-CCCCccEEecccccCcccCchhccCCCCCCEEECCCCcc
Q 043041 4 DLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMG-SLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNAL 82 (395)
Q Consensus 4 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l 82 (395)
.|..+.|+ .+|. +.+...++.|+|.+|.|+. + +.++ .+.+|+.|+|++|.|+.. + .+..++.|++|++++|++
T Consensus 3 ~lt~~~i~-~~~~-~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I 76 (175)
T PF14580_consen 3 RLTANMIE-QIAQ-YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRI 76 (175)
T ss_dssp -------------------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS--
T ss_pred cccccccc-cccc-ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCC
Confidence 35556665 5555 4556688999999999984 3 3465 588999999999999943 3 588899999999999999
Q ss_pred cccCchhHhhcCCCccEEEccceeeccccC-ccCCCCCCccEEEcccCCCCCCCC---ccccccccchhccc
Q 043041 83 SGEIPKWIGESLPKLIVLSLMSNKFHGIIP-FQLCYLPFIQILDLSSNNIPGIIP---KCFNNFTAMAQEKS 150 (395)
Q Consensus 83 ~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~l~~ 150 (395)
+ +++..+...+++|++|++++|+|...-. ..+..+++|+.|++.+|.+..... ..+..+++|+.++.
T Consensus 77 ~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 77 S-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred C-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 9 8876665458999999999999974322 356778999999999999975421 23456677776663
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.24 E-value=3.5e-12 Score=105.06 Aligned_cols=122 Identities=31% Similarity=0.439 Sum_probs=52.7
Q ss_pred CEEEccCCcccccCCCCcc-CCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhc-cCCCCCCEEECC
Q 043041 1 MYLDLSNNLLSGRLPDCWP-LFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSL-QNCSLLILMDLG 78 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~ls 78 (395)
++|+|++|.|+ .+. .++ .+.+|+.|+|++|.|+. +. .+..++.|+.|++++|+|+. ++..+ ..+++|++|+++
T Consensus 22 ~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 22 RELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE-T
T ss_pred ccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECc
Confidence 47999999998 443 465 58999999999999984 33 58889999999999999994 54445 469999999999
Q ss_pred CCcccccCch-hHhhcCCCccEEEccceeeccccC---ccCCCCCCccEEEccc
Q 043041 79 RNALSGEIPK-WIGESLPKLIVLSLMSNKFHGIIP---FQLCYLPFIQILDLSS 128 (395)
Q Consensus 79 ~n~l~~~ip~-~~~~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~l~~ 128 (395)
+|++. .+.. .-...+++|+.|++.+|.++.... ..+..+|+|+.||-..
T Consensus 97 ~N~I~-~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 97 NNKIS-DLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp TS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CCcCC-ChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 99997 4432 122359999999999999984321 2356789999998643
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=5.5e-12 Score=114.03 Aligned_cols=203 Identities=26% Similarity=0.271 Sum_probs=135.8
Q ss_pred EEccCCcccccCC--CCccCCCCCCEEECCCCcccc--cCCCCCCCCCCccEEecccccCcccCchhc-cCCCCCCEEEC
Q 043041 3 LDLSNNLLSGRLP--DCWPLFDRLRILDLANNNFSG--KIPDSMGSLPNIQILSLHNNSLTGELPSSL-QNCSLLILMDL 77 (395)
Q Consensus 3 L~Ls~n~l~~~~p--~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~l 77 (395)
+.|.+.... ..+ .....|++++.|||+.|-+.. .+-.-...+++|+.|+|+.|++.....+.. ..+++|+.|.+
T Consensus 126 IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l 204 (505)
T KOG3207|consen 126 ISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVL 204 (505)
T ss_pred eeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEe
Confidence 445555554 333 366789999999999998863 233345679999999999999873333222 25789999999
Q ss_pred CCCcccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCC-ccccccccchhccccccccC
Q 043041 78 GRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIP-KCFNNFTAMAQEKSSVLSVT 156 (395)
Q Consensus 78 s~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~l~~~~~~~~ 156 (395)
+.|.++..--.++...+|+|+.|+|..|............+..|+.|||++|++-+..- ...
T Consensus 205 ~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~----------------- 267 (505)
T KOG3207|consen 205 NSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKV----------------- 267 (505)
T ss_pred ccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccc-----------------
Confidence 99999855445555679999999999996443444455667889999999999864321 112
Q ss_pred ccccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccC-CChh-----hhcCcCCCEEeCCCCcC
Q 043041 157 SEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGE-VPEE-----IMDLVGLIAMNLSRNNL 230 (395)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~-----~~~l~~L~~L~Ls~N~l 230 (395)
+.++.|..|+++.+.+... .|+. ...+++|++|+++.|++
T Consensus 268 ----------------------------------~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 268 ----------------------------------GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred ----------------------------------ccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 2344456666666666532 2322 34567788888888877
Q ss_pred ccc-CCcccCCCCCCCEEECcCCccCcc
Q 043041 231 TGQ-ITPKIGQLKSLDFLDLSRNRFFGG 257 (395)
Q Consensus 231 ~~~-~p~~~~~l~~L~~L~Ls~N~l~~~ 257 (395)
... .-..+..+++|+.|....|.++.+
T Consensus 314 ~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 314 RDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccccccchhhccchhhhhhccccccccc
Confidence 521 123344556667777777777643
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.16 E-value=4.1e-12 Score=109.69 Aligned_cols=131 Identities=28% Similarity=0.291 Sum_probs=89.9
Q ss_pred CCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccccccCCccccCCCCcc
Q 043041 95 PKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFF 174 (395)
Q Consensus 95 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (395)
+.|+++||++|.|+ .+..+..-+|.++.|+++.|.+..+. +
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~-----n--------------------------------- 324 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ-----N--------------------------------- 324 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh-----h---------------------------------
Confidence 45777777777776 55566666777777777777775321 1
Q ss_pred ccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCcc
Q 043041 175 SGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRF 254 (395)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 254 (395)
+..+++|+.||||+|.++ .+..+-..+.++++|+|+.|.+.. -..+..+-+|..||+++|+|
T Consensus 325 ---------------La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 325 ---------------LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQI 386 (490)
T ss_pred ---------------hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccch
Confidence 123455688888888887 555566677788888888888752 23455667788888888888
Q ss_pred CccC-cccccCCCCCCEEeCcCCcCcccC
Q 043041 255 FGGI-PSSLSLLSGLSVMDLSYNNLSGKI 282 (395)
Q Consensus 255 ~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~ 282 (395)
.... ...++++|.|+.+.|.+|++.+.+
T Consensus 387 e~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 387 EELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhHHHhcccccccHHHHHhhcCCCccccc
Confidence 6432 245778888888888888887543
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.15 E-value=1.6e-12 Score=114.43 Aligned_cols=237 Identities=20% Similarity=0.235 Sum_probs=126.3
Q ss_pred ccCCCCCCEEECCCCccccc----CCCCCCCCCCccEEeccccc---CcccCc-------hhccCCCCCCEEECCCCccc
Q 043041 18 WPLFDRLRILDLANNNFSGK----IPDSMGSLPNIQILSLHNNS---LTGELP-------SSLQNCSLLILMDLGRNALS 83 (395)
Q Consensus 18 ~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~---l~~~~p-------~~~~~l~~L~~L~ls~n~l~ 83 (395)
...+..++.++|++|.+... +...+.+.++|+.-++++-- +...+| .++.++++|++||||+|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 34556677777777776532 33344555666666665431 112233 23445667777777777765
Q ss_pred ccCchhHh---hcCCCccEEEccceeeccc-------------cCccCCCCCCccEEEcccCCCCCCCCc----cccccc
Q 043041 84 GEIPKWIG---ESLPKLIVLSLMSNKFHGI-------------IPFQLCYLPFIQILDLSSNNIPGIIPK----CFNNFT 143 (395)
Q Consensus 84 ~~ip~~~~---~~l~~L~~L~L~~n~l~~~-------------~p~~l~~l~~L~~L~l~~n~l~~~~~~----~~~~l~ 143 (395)
...+..+. ..+..|++|+|.+|.+.-. ...-...-+.|+++..++|++...... .|...+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 44333222 3466777777777766411 112234456677777777777543221 222222
Q ss_pred cchhccccccccCccccccCCccccCCCCccccceEEEeecc--ccccccccCcccEEECcCCCCccC----CChhhhcC
Q 043041 144 AMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGS--QYQYQNTLGLVKMLDLSSNKLGGE----VPEEIMDL 217 (395)
Q Consensus 144 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l 217 (395)
.|+.+........ ..|. ...-+..+++|++|||..|-++.. +...+..+
T Consensus 186 ~leevr~~qN~I~-------------------------~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~ 240 (382)
T KOG1909|consen 186 TLEEVRLSQNGIR-------------------------PEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW 240 (382)
T ss_pred ccceEEEeccccc-------------------------CchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc
Confidence 2222211100000 0011 111234566777777777777642 33445667
Q ss_pred cCCCEEeCCCCcCcccCCccc-----CCCCCCCEEECcCCccCcc----CcccccCCCCCCEEeCcCCcCc
Q 043041 218 VGLIAMNLSRNNLTGQITPKI-----GQLKSLDFLDLSRNRFFGG----IPSSLSLLSGLSVMDLSYNNLS 279 (395)
Q Consensus 218 ~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~ 279 (395)
++|+.|+++++.+...-...| ...|+|+.|.+.+|.++.. +...+...|.|..|+|+.|.+.
T Consensus 241 ~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 241 PHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred chheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 777777777777754322222 2357777777777777632 2233445667777777777773
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.14 E-value=7.2e-12 Score=108.20 Aligned_cols=104 Identities=33% Similarity=0.404 Sum_probs=46.5
Q ss_pred CCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCCCccEEE
Q 043041 22 DRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLS 101 (395)
Q Consensus 22 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~ 101 (395)
+.|+.+|||+|.|+ .+..++.-++.++.|++|+|.++ .+. .+..+++|++||||+|.++ ++..+-. .+.++++|.
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~-KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHL-KLGNIKTLK 358 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHh-hhcCEeeee
Confidence 44445555555444 33444444445555555555544 221 2444445555555555444 3333332 244455555
Q ss_pred ccceeeccccCccCCCCCCccEEEcccCCCC
Q 043041 102 LMSNKFHGIIPFQLCYLPFIQILDLSSNNIP 132 (395)
Q Consensus 102 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 132 (395)
|+.|.+... ..++++-+|..||+++|+|.
T Consensus 359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred hhhhhHhhh--hhhHhhhhheeccccccchh
Confidence 554444321 12334444444455444443
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.09 E-value=1e-10 Score=79.37 Aligned_cols=61 Identities=41% Similarity=0.603 Sum_probs=39.4
Q ss_pred CCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcc
Q 043041 22 DRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNAL 82 (395)
Q Consensus 22 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l 82 (395)
++|+.|++++|+++...++.|.++++|++|++++|.++...|..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566666666666655555666666666666666666655556666666666666666653
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.08 E-value=9.1e-11 Score=119.90 Aligned_cols=285 Identities=23% Similarity=0.205 Sum_probs=163.1
Q ss_pred EEEccCCcccccCCCCccCCCCCCEEECCCCc--ccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCC
Q 043041 2 YLDLSNNLLSGRLPDCWPLFDRLRILDLANNN--FSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGR 79 (395)
Q Consensus 2 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~ 79 (395)
.+.+-+|.+. .++.+. ..+.|+.|-+..|. +....++.|..++.|++|||++|.=-+.+|..++.+-+|++|++++
T Consensus 527 r~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 527 RMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD 604 (889)
T ss_pred EEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC
Confidence 3455566665 455543 34579999998886 5544455688899999999998876678999999999999999999
Q ss_pred CcccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCC--CCCCccccccccchhccccccccCc
Q 043041 80 NALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIP--GIIPKCFNNFTAMAQEKSSVLSVTS 157 (395)
Q Consensus 80 n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~l~~~~~~~~~ 157 (395)
..+. .+|.++. .+..|.+|++..+.-...+|.....+++|++|.+...... ...-..+..++.|+.+.....+..-
T Consensus 605 t~I~-~LP~~l~-~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~ 682 (889)
T KOG4658|consen 605 TGIS-HLPSGLG-NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLL 682 (889)
T ss_pred CCcc-ccchHHH-HHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHh
Confidence 9998 9999998 4999999999988766666777778999999998765422 1122233344444443321111100
Q ss_pred cccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhc------CcCCCEEeCCCCcCc
Q 043041 158 EYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMD------LVGLIAMNLSRNNLT 231 (395)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~------l~~L~~L~Ls~N~l~ 231 (395)
.........+......... .-.........+..+.+|+.|.+.++.+.......... ++++..+...++...
T Consensus 683 ~e~l~~~~~L~~~~~~l~~--~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~ 760 (889)
T KOG4658|consen 683 LEDLLGMTRLRSLLQSLSI--EGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML 760 (889)
T ss_pred HhhhhhhHHHHHHhHhhhh--cccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc
Confidence 0000000000000000000 00001112223455667777777777665322211111 222222222222211
Q ss_pred ccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCccc--CCCCcccCcccc
Q 043041 232 GQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGK--IPSGTQLQSFNA 293 (395)
Q Consensus 232 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~p~~~~l~~l~~ 293 (395)
..+.+.-..++|+.|.+..+.....+.+....+..++.+-+..+.+.+. +...+.++.+..
T Consensus 761 -r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~ 823 (889)
T KOG4658|consen 761 -RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYW 823 (889)
T ss_pred -cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEe
Confidence 2233333457888888887766655555556666666666666666654 344444444433
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.06 E-value=1.6e-11 Score=117.28 Aligned_cols=110 Identities=26% Similarity=0.324 Sum_probs=60.3
Q ss_pred CCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCCCccE
Q 043041 20 LFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIV 99 (395)
Q Consensus 20 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~ 99 (395)
.+..++.+++..|.+.. +-..+..+++|+.|++.+|+|.. +...+..+.+|++|++++|.|+ .+...- .++.|+.
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~-~i~~l~--~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT-KLEGLS--TLTLLKE 144 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccc-cccchh--hccchhh
Confidence 34455555566666552 23335556666666666666662 2222555666666666666665 443322 2555666
Q ss_pred EEccceeeccccCccCCCCCCccEEEcccCCCCCCCC
Q 043041 100 LSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIP 136 (395)
Q Consensus 100 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~ 136 (395)
|++.+|.+... ..+..++.|+.+++++|.+....+
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIEN 179 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhh
Confidence 66666666522 234446666666666666654443
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.03 E-value=1.7e-11 Score=117.09 Aligned_cols=210 Identities=31% Similarity=0.362 Sum_probs=113.0
Q ss_pred EccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCccc
Q 043041 4 DLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALS 83 (395)
Q Consensus 4 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~ 83 (395)
++..|.+. .+-..+..+++|+.|++.+|+|.. +...+..+++|++|++++|.|+... .+..+..|+.|++++|.+.
T Consensus 78 ~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~ 153 (414)
T KOG0531|consen 78 NLRQNLIA-KILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS 153 (414)
T ss_pred ccchhhhh-hhhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhheeccCcch
Confidence 34555554 233345666666677777776663 2222556666677777777666432 2455555666777777665
Q ss_pred ccCchhHhhcCCCccEEEccceeeccccC-ccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCcccccc
Q 043041 84 GEIPKWIGESLPKLIVLSLMSNKFHGIIP-FQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFA 162 (395)
Q Consensus 84 ~~ip~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~ 162 (395)
.+...- .++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+..... +..
T Consensus 154 -~~~~~~--~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~--------------------- 206 (414)
T KOG0531|consen 154 -DISGLE--SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LDL--------------------- 206 (414)
T ss_pred -hccCCc--cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--hHH---------------------
Confidence 444332 26666666777666664333 1 3555666666666666642211 111
Q ss_pred CCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCc--CCCEEeCCCCcCcccCCcccCC
Q 043041 163 GGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLV--GLIAMNLSRNNLTGQITPKIGQ 240 (395)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~~~~~ 240 (395)
+..+..+++..|.++..-+ +..++ +|+.+++++|.+. ..+..+..
T Consensus 207 ------------------------------~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~ 253 (414)
T KOG0531|consen 207 ------------------------------LKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLEN 253 (414)
T ss_pred ------------------------------HHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccc
Confidence 1112333555555542221 11122 3667777777776 34355566
Q ss_pred CCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCc
Q 043041 241 LKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLS 279 (395)
Q Consensus 241 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 279 (395)
+..+..|++.+|++...- .+...+.+..+....|.+.
T Consensus 254 ~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 254 LKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLA 290 (414)
T ss_pred cccccccchhhccccccc--cccccchHHHhccCcchhc
Confidence 667777777777665321 1334445555566666554
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.99 E-value=5.5e-10 Score=75.77 Aligned_cols=58 Identities=45% Similarity=0.666 Sum_probs=54.3
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSL 58 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 58 (395)
++|++++|+++...++.|.++++|++|++++|+++...|.+|.++++|++|++++|+|
T Consensus 4 ~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 4 ESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp SEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5799999999977778999999999999999999988889999999999999999975
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.90 E-value=1.4e-10 Score=102.26 Aligned_cols=228 Identities=21% Similarity=0.223 Sum_probs=129.5
Q ss_pred EEEccCCccccc----CCCCccCCCCCCEEECCCCc---ccccCCCC-------CCCCCCccEEecccccCcccCch---
Q 043041 2 YLDLSNNLLSGR----LPDCWPLFDRLRILDLANNN---FSGKIPDS-------MGSLPNIQILSLHNNSLTGELPS--- 64 (395)
Q Consensus 2 ~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~---l~~~~p~~-------~~~l~~L~~L~L~~n~l~~~~p~--- 64 (395)
+++||+|.|... +...+.+.+.|+.-++++-- +...+|++ +-.+++|++||||+|-+...-+.
T Consensus 34 ~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~ 113 (382)
T KOG1909|consen 34 KLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLE 113 (382)
T ss_pred EEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHH
Confidence 678888887533 23344555666666666532 12233332 23455677777777766532222
Q ss_pred -hccCCCCCCEEECCCCcccccCchhH-h------------hcCCCccEEEccceeeccc----cCccCCCCCCccEEEc
Q 043041 65 -SLQNCSLLILMDLGRNALSGEIPKWI-G------------ESLPKLIVLSLMSNKFHGI----IPFQLCYLPFIQILDL 126 (395)
Q Consensus 65 -~~~~l~~L~~L~ls~n~l~~~ip~~~-~------------~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l 126 (395)
-+..+..|++|.|.+|.+. ...... + ..-+.|+++..+.|++... +...|...+.|+.+.+
T Consensus 114 ~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~ 192 (382)
T KOG1909|consen 114 ELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRL 192 (382)
T ss_pred HHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEE
Confidence 2345666777777777664 222111 0 0235667777776666421 2223444566666666
Q ss_pred ccCCCCCCC----CccccccccchhccccccccCccccccCCccccCCCCccccceEEEeecc--ccccccccCcccEEE
Q 043041 127 SSNNIPGII----PKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGS--QYQYQNTLGLVKMLD 200 (395)
Q Consensus 127 ~~n~l~~~~----~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~L~~L~ 200 (395)
+.|.|...- ...|..++.|+.++.+...... .|. ....+..+++|+.|+
T Consensus 193 ~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~-------------------------egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 193 SQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL-------------------------EGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ecccccCchhHHHHHHHHhCCcceeeecccchhhh-------------------------HHHHHHHHHhcccchheeec
Confidence 666664221 1234455555554432211110 000 112234567789999
Q ss_pred CcCCCCccCCChhh-----hcCcCCCEEeCCCCcCcc----cCCcccCCCCCCCEEECcCCccC
Q 043041 201 LSSNKLGGEVPEEI-----MDLVGLIAMNLSRNNLTG----QITPKIGQLKSLDFLDLSRNRFF 255 (395)
Q Consensus 201 Ls~n~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~ 255 (395)
+++|.+...-..++ ...+.|+.|.|.+|.++- .+...+...+.|+.|+|++|.+.
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 99999976544433 246899999999999972 23344566899999999999994
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.83 E-value=7e-09 Score=106.29 Aligned_cols=122 Identities=29% Similarity=0.389 Sum_probs=90.9
Q ss_pred EEccCCc--ccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 3 LDLSNNL--LSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 3 L~Ls~n~--l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
|-+..|. +....++.|..++.|++|||++|.=-+.+|..+++|-+|++|+|++..++ .+|..+.++..|.+|++..+
T Consensus 550 Lll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~ 628 (889)
T KOG4658|consen 550 LLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVT 628 (889)
T ss_pred EEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccc
Confidence 4455554 44334445788999999999998776789999999999999999999999 89999999999999999998
Q ss_pred cccccCchhHhhcCCCccEEEccceeec--cccCccCCCCCCccEEEc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFH--GIIPFQLCYLPFIQILDL 126 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~l 126 (395)
.-...+|.... .+++|++|.+...... ...-..+..+.+|+.+..
T Consensus 629 ~~l~~~~~i~~-~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 629 GRLESIPGILL-ELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred cccccccchhh-hcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 87645544444 5999999998765421 222223344555555444
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.66 E-value=8.2e-10 Score=106.09 Aligned_cols=109 Identities=29% Similarity=0.290 Sum_probs=81.9
Q ss_pred ccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEE
Q 043041 192 TLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVM 271 (395)
Q Consensus 192 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 271 (395)
-++.++.|+|++|+++... .+..+++|++|||++|.+. .+|..-..-..|..|.+++|.++.. ..+.++.+|..|
T Consensus 185 ll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL--~gie~LksL~~L 259 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL--RGIENLKSLYGL 259 (1096)
T ss_pred HHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh--hhHHhhhhhhcc
Confidence 3567899999999998433 7889999999999999998 4544322223499999999998743 246788999999
Q ss_pred eCcCCcCccc--CCCCcccCccccccccCCCCCCCC
Q 043041 272 DLSYNNLSGK--IPSGTQLQSFNASTYAGNELCGLP 305 (395)
Q Consensus 272 ~Ls~N~l~~~--~p~~~~l~~l~~~~~~gN~lc~~~ 305 (395)
|+++|-+++- .-..+.+..|..+.+.||.+|-.|
T Consensus 260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred chhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 9999988763 222356777788889999877544
No 44
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.45 E-value=5.7e-09 Score=80.16 Aligned_cols=57 Identities=33% Similarity=0.455 Sum_probs=26.3
Q ss_pred cEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccC
Q 043041 197 KMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFF 255 (395)
Q Consensus 197 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 255 (395)
+.|+|++|.++ .+|..+..++.|+.||++.|.+. ..|..+..+.++..||..+|.+.
T Consensus 80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 44444444444 44444444444444444444444 33444444444444444444443
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=5e-09 Score=90.76 Aligned_cols=86 Identities=26% Similarity=0.250 Sum_probs=61.5
Q ss_pred CccEEecccccCc-ccCchhccCCCCCCEEECCCCcccccCchhHhhcCCCccEEEcccee-eccc-cCccCCCCCCccE
Q 043041 47 NIQILSLHNNSLT-GELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNK-FHGI-IPFQLCYLPFIQI 123 (395)
Q Consensus 47 ~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~ 123 (395)
.|++|||++..|+ ..+-..+..|.+|+.|.+.++++.+.|-..+.+ -.+|+.|+++.+. ++.. ..-.+.+++.|+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 5888888888877 233345677888888888888888777777774 7888888887653 3211 1123567788888
Q ss_pred EEcccCCCCC
Q 043041 124 LDLSSNNIPG 133 (395)
Q Consensus 124 L~l~~n~l~~ 133 (395)
|+++.+.+..
T Consensus 265 LNlsWc~l~~ 274 (419)
T KOG2120|consen 265 LNLSWCFLFT 274 (419)
T ss_pred cCchHhhccc
Confidence 8888887754
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.41 E-value=2.1e-08 Score=77.14 Aligned_cols=60 Identities=25% Similarity=0.397 Sum_probs=26.9
Q ss_pred CCCEEECCCCcccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCC
Q 043041 71 LLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIP 132 (395)
Q Consensus 71 ~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 132 (395)
+|+..+|++|.+. ++|..+....+.+++|++.+|++. .+|..+..++.|+.|+++.|.+.
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc
Confidence 3444444444444 444444433344444444444444 33444444444444444444443
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.37 E-value=4.8e-09 Score=100.94 Aligned_cols=105 Identities=25% Similarity=0.302 Sum_probs=79.7
Q ss_pred CCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCCCccEEEc
Q 043041 23 RLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSL 102 (395)
Q Consensus 23 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L 102 (395)
.|...+.++|.+. ....++.-++.|+.|||++|+++.. +.+..|++|++|||+.|.+. .+|..-..++. |+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence 4667778888877 5566677788888999999988843 37888888999999999888 77754433333 888888
Q ss_pred cceeeccccCccCCCCCCccEEEcccCCCCCC
Q 043041 103 MSNKFHGIIPFQLCYLPFIQILDLSSNNIPGI 134 (395)
Q Consensus 103 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 134 (395)
++|.++.. ..+.++.+|+.||+++|-+.+.
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~h 269 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEH 269 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcc
Confidence 88888744 3467788888889998887643
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=5.4e-08 Score=84.47 Aligned_cols=204 Identities=19% Similarity=0.247 Sum_probs=105.6
Q ss_pred CCCccEEecccccCcc--cCchhccCCCCCCEEECCCCcccccCchhHhhcCCCccEEEccceeecc-ccCccCCCCCCc
Q 043041 45 LPNIQILSLHNNSLTG--ELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHG-IIPFQLCYLPFI 121 (395)
Q Consensus 45 l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L 121 (395)
.+.++.|||.+|.|+. .+...+.+++.|++|+++.|++...|-..-. .+.+|++|.|.+..+.- .....+..+|.+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~-p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPL-PLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcc-cccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 5667777777777762 3444566777777777777777633322211 25677777777766541 223345566777
Q ss_pred cEEEcccCCCCCCC--Cccccccc-cchhccccccccCccccccCCccccCCCCccccceEEEeeccccccccccCcccE
Q 043041 122 QILDLSSNNIPGII--PKCFNNFT-AMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKM 198 (395)
Q Consensus 122 ~~L~l~~n~l~~~~--~~~~~~l~-~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 198 (395)
+.|.++.|.+.-.. .++..... .+.++....+. ...|. ........++++..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~--~~~w~-----------------------~~~~l~r~Fpnv~s 203 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCL--EQLWL-----------------------NKNKLSRIFPNVNS 203 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcH--HHHHH-----------------------HHHhHHhhcccchh
Confidence 77777777443111 01111100 11111000000 00000 00001123455566
Q ss_pred EECcCCCCccC-CChhhhcCcCCCEEeCCCCcCccc-CCcccCCCCCCCEEECcCCccCccCcc------cccCCCCCCE
Q 043041 199 LDLSSNKLGGE-VPEEIMDLVGLIAMNLSRNNLTGQ-ITPKIGQLKSLDFLDLSRNRFFGGIPS------SLSLLSGLSV 270 (395)
Q Consensus 199 L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~------~l~~l~~L~~ 270 (395)
+-+..|.+... ....+..++.+.-|+|+.|+|... --+.+..+++|..|.+++|.+.+.+.. .++.+++++.
T Consensus 204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~v 283 (418)
T KOG2982|consen 204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQV 283 (418)
T ss_pred eeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEE
Confidence 66666655422 122344556666777877777532 234567778888888888877644321 2456777777
Q ss_pred EeCc
Q 043041 271 MDLS 274 (395)
Q Consensus 271 L~Ls 274 (395)
|+=+
T Consensus 284 LNGs 287 (418)
T KOG2982|consen 284 LNGS 287 (418)
T ss_pred ecCc
Confidence 7644
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.32 E-value=1.1e-06 Score=72.31 Aligned_cols=102 Identities=28% Similarity=0.383 Sum_probs=53.1
Q ss_pred CCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCc---hhHhhcCCCcc
Q 043041 22 DRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIP---KWIGESLPKLI 98 (395)
Q Consensus 22 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip---~~~~~~l~~L~ 98 (395)
.+...+||++|.+.. -+.|..++.|.+|.|.+|+|+.+-|.--..+++|..|.+.+|.+. .+. +-. .+|.|+
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa--~~p~L~ 116 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLA--SCPKLE 116 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhc--cCCccc
Confidence 345556666666541 123555566666666666666544444444555666666666554 221 111 355666
Q ss_pred EEEccceeecccc---CccCCCCCCccEEEccc
Q 043041 99 VLSLMSNKFHGII---PFQLCYLPFIQILDLSS 128 (395)
Q Consensus 99 ~L~L~~n~l~~~~---p~~l~~l~~L~~L~l~~ 128 (395)
+|.+-+|.++..- -..+..+++|++||+..
T Consensus 117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 6666666554221 12345556666666544
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.28 E-value=8.6e-07 Score=55.15 Aligned_cols=36 Identities=39% Similarity=0.599 Sum_probs=16.6
Q ss_pred CccEEecccccCcccCchhccCCCCCCEEECCCCccc
Q 043041 47 NIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALS 83 (395)
Q Consensus 47 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~ 83 (395)
+|++|++++|+|+ .+|..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3445555555555 33334455555555555555544
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=1.1e-07 Score=82.66 Aligned_cols=201 Identities=19% Similarity=0.210 Sum_probs=119.9
Q ss_pred CCCCCCEEECCCCcccc--cCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCCCc
Q 043041 20 LFDRLRILDLANNNFSG--KIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKL 97 (395)
Q Consensus 20 ~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L 97 (395)
..+.++.|||.+|.|++ .+-.-+.++|.|++|+|+.|.+...+...-..+.+|++|-|.+..+...--......+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 46788999999999873 3445567899999999999998854433225678899999998887655555555568888
Q ss_pred cEEEccceeecccc--CccCCC-CCCccEEEccc---------CCCCCCCCccccccccchhccccccccCccccccCCc
Q 043041 98 IVLSLMSNKFHGII--PFQLCY-LPFIQILDLSS---------NNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGGL 165 (395)
Q Consensus 98 ~~L~L~~n~l~~~~--p~~l~~-l~~L~~L~l~~---------n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~ 165 (395)
++|.++.|.+.-.. ...... -+.+++|.+.. |++....| ++..+.....+..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp-------nv~sv~v~e~PlK--------- 212 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFP-------NVNSVFVCEGPLK--------- 212 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcc-------cchheeeecCccc---------
Confidence 88888888443110 111111 12333333332 22222221 1110000000000
Q ss_pred cccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccC-CChhhhcCcCCCEEeCCCCcCcccCCc------cc
Q 043041 166 QLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGE-VPEEIMDLVGLIAMNLSRNNLTGQITP------KI 238 (395)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~------~~ 238 (395)
..........++.+..|+|+.|++... .-+++..+++|..|.+++|.+.+..-. -+
T Consensus 213 -----------------~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llI 275 (418)
T KOG2982|consen 213 -----------------TESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLI 275 (418)
T ss_pred -----------------chhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEE
Confidence 000111223455667889999988742 345788999999999999988744322 14
Q ss_pred CCCCCCCEEECcCCccC
Q 043041 239 GQLKSLDFLDLSRNRFF 255 (395)
Q Consensus 239 ~~l~~L~~L~Ls~N~l~ 255 (395)
+.+++++.|+=+ +++
T Consensus 276 aRL~~v~vLNGs--kIs 290 (418)
T KOG2982|consen 276 ARLTKVQVLNGS--KIS 290 (418)
T ss_pred eeccceEEecCc--ccc
Confidence 678888877644 554
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.25 E-value=1e-07 Score=81.75 Aligned_cols=112 Identities=24% Similarity=0.379 Sum_probs=58.3
Q ss_pred CCCCCEEECCCCccccc----CCCCCCCCCCccEEecccccCc---ccCc-------hhccCCCCCCEEECCCCcccccC
Q 043041 21 FDRLRILDLANNNFSGK----IPDSMGSLPNIQILSLHNNSLT---GELP-------SSLQNCSLLILMDLGRNALSGEI 86 (395)
Q Consensus 21 l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~---~~~p-------~~~~~l~~L~~L~ls~n~l~~~i 86 (395)
+..++.++||+|-|... +...+.+-.+|+..+++.-... ..++ .++.+|++|+..+||+|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 55666677777666532 2223344455666655543211 1111 33456666777777777665555
Q ss_pred chhHh---hcCCCccEEEccceeeccc----cC---------ccCCCCCCccEEEcccCCCC
Q 043041 87 PKWIG---ESLPKLIVLSLMSNKFHGI----IP---------FQLCYLPFIQILDLSSNNIP 132 (395)
Q Consensus 87 p~~~~---~~l~~L~~L~L~~n~l~~~----~p---------~~l~~l~~L~~L~l~~n~l~ 132 (395)
|..+. ..-+.|++|.+.+|.+.-. +. .-...-|.|+..+...|++.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 54333 2345666777766665311 11 11223456777777777664
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.13 E-value=1.8e-06 Score=53.73 Aligned_cols=38 Identities=37% Similarity=0.719 Sum_probs=29.2
Q ss_pred CCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcc
Q 043041 22 DRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTG 60 (395)
Q Consensus 22 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 60 (395)
++|++|++++|+|+ .+|..+++|++|++|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 47888888888888 456668888888888888888873
No 54
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=5.8e-08 Score=84.32 Aligned_cols=178 Identities=18% Similarity=0.118 Sum_probs=102.8
Q ss_pred CCCEEECCCCcccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCC-CCCCCC-ccccccccchhc
Q 043041 71 LLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNN-IPGIIP-KCFNNFTAMAQE 148 (395)
Q Consensus 71 ~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~l 148 (395)
.|++|||++..++..--..+.+.+.+|+.|.+.++++...+...+.+-.+|+.|+++++. ++..-. .-+.+++.|..+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 488999998888744444555668899999999999988888888888999999998753 321110 123445555444
Q ss_pred cccccccCccccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCc---cCCChhhhcCcCCCEEeC
Q 043041 149 KSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLG---GEVPEEIMDLVGLIAMNL 225 (395)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~p~~~~~l~~L~~L~L 225 (395)
+..-+..... ......-.--++|+.|+|+|..-. ..+..-...+++|..|||
T Consensus 266 NlsWc~l~~~-------------------------~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDL 320 (419)
T KOG2120|consen 266 NLSWCFLFTE-------------------------KVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDL 320 (419)
T ss_pred CchHhhccch-------------------------hhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecc
Confidence 3211100000 000000011234666777765321 122222346777777777
Q ss_pred CCCc-CcccCCcccCCCCCCCEEECcCCccCccCccc---ccCCCCCCEEeCcC
Q 043041 226 SRNN-LTGQITPKIGQLKSLDFLDLSRNRFFGGIPSS---LSLLSGLSVMDLSY 275 (395)
Q Consensus 226 s~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L~~L~Ls~ 275 (395)
|.|. ++...-..|..++.|++|.++.|.. .+|.. +...|+|.+||+.+
T Consensus 321 SD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 321 SDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred ccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence 7754 3433334456677777777777753 34432 44556777777654
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.07 E-value=2.3e-05 Score=72.90 Aligned_cols=73 Identities=14% Similarity=0.121 Sum_probs=38.8
Q ss_pred CCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCCCccEEEccce-eeccccCccCCCCCCccE
Q 043041 45 LPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSN-KFHGIIPFQLCYLPFIQI 123 (395)
Q Consensus 45 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~ 123 (395)
+.+++.|++++|.++ .+|. -..+|++|.++++.-...+|..+. ++|+.|.+++| .+. .+|. +|+.
T Consensus 51 ~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP---~nLe~L~Ls~Cs~L~-sLP~------sLe~ 116 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP---EGLEKLTVCHCPEIS-GLPE------SVRS 116 (426)
T ss_pred hcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh---hhhhheEccCccccc-cccc------ccce
Confidence 566667777766666 4441 123466777766332225555442 46677777666 333 3332 3555
Q ss_pred EEcccCCC
Q 043041 124 LDLSSNNI 131 (395)
Q Consensus 124 L~l~~n~l 131 (395)
|++..+..
T Consensus 117 L~L~~n~~ 124 (426)
T PRK15386 117 LEIKGSAT 124 (426)
T ss_pred EEeCCCCC
Confidence 56555443
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.02 E-value=1.3e-05 Score=66.03 Aligned_cols=105 Identities=25% Similarity=0.296 Sum_probs=79.4
Q ss_pred CCEEECCCCcccccCCCCCC-CCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCCCccEEEc
Q 043041 24 LRILDLANNNFSGKIPDSMG-SLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSL 102 (395)
Q Consensus 24 L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L 102 (395)
=+.++|.+.++... -. ++ .+.....+||++|.+.. + ..|..++.|.+|.+++|+|+ .|.+.+..-+++|+.|.+
T Consensus 21 e~e~~LR~lkip~i-en-lg~~~d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~L 95 (233)
T KOG1644|consen 21 ERELDLRGLKIPVI-EN-LGATLDQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLIL 95 (233)
T ss_pred ccccccccccccch-hh-ccccccccceecccccchhh-c-ccCCCccccceEEecCCcce-eeccchhhhccccceEEe
Confidence 46777777776521 11 22 24567889999999872 2 45778899999999999999 888888877899999999
Q ss_pred cceeecccc-CccCCCCCCccEEEcccCCCCC
Q 043041 103 MSNKFHGII-PFQLCYLPFIQILDLSSNNIPG 133 (395)
Q Consensus 103 ~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~ 133 (395)
.+|+|...- -.-+..++.|++|.+-+|.+..
T Consensus 96 tnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 96 TNNSIQELGDLDPLASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred cCcchhhhhhcchhccCCccceeeecCCchhc
Confidence 999987321 1235678899999999888863
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.96 E-value=3.2e-06 Score=72.76 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=18.1
Q ss_pred CcccEEECcCCCCccC----CChhhhcCcCCCEEeCCCCcCc
Q 043041 194 GLVKMLDLSSNKLGGE----VPEEIMDLVGLIAMNLSRNNLT 231 (395)
Q Consensus 194 ~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~ 231 (395)
.+|+.|||+.|-++-. ....+..++.|+.|++..|-++
T Consensus 214 ~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 214 HSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred CcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 3455566665555421 1222334445555555555544
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.94 E-value=3.9e-05 Score=60.44 Aligned_cols=124 Identities=18% Similarity=0.219 Sum_probs=74.6
Q ss_pred CCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcC
Q 043041 15 PDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESL 94 (395)
Q Consensus 15 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l 94 (395)
..+|.++++|+.+.+.. .+......+|.++++|+.+.+.++ +.......|.++.+|+.+.+.+ .+. .++...+..+
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~ 80 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNC 80 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccc
Confidence 45788899999999985 576677778999999999999875 6656667788998999999976 555 7777777678
Q ss_pred CCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccc
Q 043041 95 PKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAM 145 (395)
Q Consensus 95 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 145 (395)
++|+.+.+..+ +.......|... +|+.+.+.. .+..+....|.+.++|
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 99999999765 554556677777 899998876 5555556677666554
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.77 E-value=0.00013 Score=68.07 Aligned_cols=66 Identities=9% Similarity=0.128 Sum_probs=48.2
Q ss_pred ccCCCCCCEEECCCCcccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccC-CCCCCCCccc
Q 043041 66 LQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSN-NIPGIIPKCF 139 (395)
Q Consensus 66 ~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n-~l~~~~~~~~ 139 (395)
+..+.++++|++++|.++ .+| .+ .++|+.|.++++.-...+|..+. ++|++|++++| .+. .+|..+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP-~L---P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP-VL---PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC-CC---CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccccc
Confidence 455789999999999998 888 22 45799999988544345665553 58999999998 554 455443
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.60 E-value=4.2e-05 Score=76.95 Aligned_cols=82 Identities=23% Similarity=0.312 Sum_probs=59.5
Q ss_pred CCCCEEECCCCccc-ccCchhHhhcCCCccEEEccceeecc-ccCccCCCCCCccEEEcccCCCCCCCCccccccccchh
Q 043041 70 SLLILMDLGRNALS-GEIPKWIGESLPKLIVLSLMSNKFHG-IIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQ 147 (395)
Q Consensus 70 ~~L~~L~ls~n~l~-~~ip~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 147 (395)
.+|++||+++.... ..=|..++..+|+|+.|.+++-.+.. ..-....++++|..||+|+.+++.. .+++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 57999999987543 12345666679999999999877642 2334457789999999999999855 56777777777
Q ss_pred cccccc
Q 043041 148 EKSSVL 153 (395)
Q Consensus 148 l~~~~~ 153 (395)
|....+
T Consensus 200 L~mrnL 205 (699)
T KOG3665|consen 200 LSMRNL 205 (699)
T ss_pred HhccCC
Confidence 664333
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.54 E-value=2.9e-05 Score=78.06 Aligned_cols=128 Identities=22% Similarity=0.283 Sum_probs=91.6
Q ss_pred EEEccCCcccccCCCCc-----cCCCCCCEEECCCCcccc-cCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEE
Q 043041 2 YLDLSNNLLSGRLPDCW-----PLFDRLRILDLANNNFSG-KIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILM 75 (395)
Q Consensus 2 ~L~Ls~n~l~~~~p~~~-----~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 75 (395)
+||+++...- ...+ .-+|.|+.|.+++-.+.. .......++++|..||+|+.+++.. ..++.+++|++|
T Consensus 126 ~LdI~G~~~~---s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 126 HLDISGSELF---SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hcCccccchh---hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 5677664432 2222 358999999999877752 2233456789999999999999944 778999999999
Q ss_pred ECCCCcccc-cCchhHhhcCCCccEEEccceeecccc------CccCCCCCCccEEEcccCCCCCCC
Q 043041 76 DLGRNALSG-EIPKWIGESLPKLIVLSLMSNKFHGII------PFQLCYLPFIQILDLSSNNIPGII 135 (395)
Q Consensus 76 ~ls~n~l~~-~ip~~~~~~l~~L~~L~L~~n~l~~~~------p~~l~~l~~L~~L~l~~n~l~~~~ 135 (395)
.+.+=.+.. .--..+| .|++|++||+|........ -..-..+|+|+.||.|++.+....
T Consensus 201 ~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred hccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 998877762 1224677 5999999999987644221 112245899999999988877543
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.38 E-value=0.00052 Score=53.95 Aligned_cols=113 Identities=14% Similarity=0.188 Sum_probs=67.2
Q ss_pred EEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCc
Q 043041 2 YLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNA 81 (395)
Q Consensus 2 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~ 81 (395)
.+.+.. .++.+-..+|.+++.|+.+++.++ +......+|.+++.|+.+.+.+ .+.......|..+++|+.+++..+
T Consensus 16 ~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~- 91 (129)
T PF13306_consen 16 SITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN- 91 (129)
T ss_dssp EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT-
T ss_pred EEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-
Confidence 345553 566566678999999999999885 7656667899998999999976 555455667888999999999876
Q ss_pred ccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCc
Q 043041 82 LSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFI 121 (395)
Q Consensus 82 l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 121 (395)
+. .++...+.+. +|+.+.+.. .+.......|.++++|
T Consensus 92 ~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 92 IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp -B-EEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 66 7888888766 999998876 4443455566666655
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.30 E-value=9.9e-05 Score=63.52 Aligned_cols=107 Identities=22% Similarity=0.261 Sum_probs=65.7
Q ss_pred CCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC--cccccCchhHhhcCCCccEEEccceeeccccCcc-
Q 043041 38 IPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN--ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQ- 114 (395)
Q Consensus 38 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n--~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~- 114 (395)
+......+..|+.|.+.+..++.. ..|-.+++|++|.++.| ++.+.++.-+- .+|+|++|++++|++.. +.+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e-~~P~l~~l~ls~Nki~~--lstl 109 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAE-KAPNLKVLNLSGNKIKD--LSTL 109 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhh-hCCceeEEeecCCcccc--cccc
Confidence 444444556677777766666622 34556778888888888 55555554444 46888888888888762 222
Q ss_pred --CCCCCCccEEEcccCCCCCCCC---ccccccccchhcc
Q 043041 115 --LCYLPFIQILDLSSNNIPGIIP---KCFNNFTAMAQEK 149 (395)
Q Consensus 115 --l~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~l~ 149 (395)
+..+.+|..|++.+|..+..-- ..|.-+++|+.++
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 3456677778888776664211 2344555665554
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.29 E-value=0.00015 Score=62.40 Aligned_cols=111 Identities=21% Similarity=0.290 Sum_probs=78.4
Q ss_pred CCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccc--cCcccCchhccCCCCCCEEECCCCcccccCchhHh
Q 043041 14 LPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNN--SLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIG 91 (395)
Q Consensus 14 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~ 91 (395)
+......+..|+.|++.+..++.. ..|-.|++|+.|.++.| ++.+.++-....+++|++|++++|++. . +..+-
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~-lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-D-LSTLR 110 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-c-ccccc
Confidence 555556677888888888877632 34566889999999999 666666666667799999999999986 2 22221
Q ss_pred --hcCCCccEEEccceeeccccC---ccCCCCCCccEEEccc
Q 043041 92 --ESLPKLIVLSLMSNKFHGIIP---FQLCYLPFIQILDLSS 128 (395)
Q Consensus 92 --~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~l~~ 128 (395)
+.+.+|..|++.+|..+..-. ..|.-+++|++||-..
T Consensus 111 pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 247788899999887664211 2345577888887543
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=2.4e-05 Score=67.70 Aligned_cols=100 Identities=24% Similarity=0.325 Sum_probs=57.5
Q ss_pred CCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCch-hHhhcCCCccE
Q 043041 21 FDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPK-WIGESLPKLIV 99 (395)
Q Consensus 21 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~-~~~~~l~~L~~ 99 (395)
+.+.+.|++.++.++++ . -...++.|++|.|+-|+|+.. ..+..|++|++|+|..|.|. ++-. ...+++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI-s-ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-S-ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH-H-HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence 34555666666666532 1 133566777777777777643 23666777777777777665 4432 22245667777
Q ss_pred EEccceeeccccCcc-----CCCCCCccEEE
Q 043041 100 LSLMSNKFHGIIPFQ-----LCYLPFIQILD 125 (395)
Q Consensus 100 L~L~~n~l~~~~p~~-----l~~l~~L~~L~ 125 (395)
|.|..|.-.|.-+.. +..+|+|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 777766655443322 33456666655
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=0.0002 Score=62.25 Aligned_cols=100 Identities=21% Similarity=0.181 Sum_probs=77.7
Q ss_pred CCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCCCccEEEccceeecccc-CccCCCCCCccE
Q 043041 45 LPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGII-PFQLCYLPFIQI 123 (395)
Q Consensus 45 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~ 123 (395)
+.+.+.|+..++.++++ .....++.|++|.||-|+|+ ++.+.. .+++|++|+|..|.|...- -..+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~pl~--rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAPLQ--RCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchhHH--HHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 56788999999999854 45678999999999999998 665543 5899999999999987331 124678999999
Q ss_pred EEcccCCCCCCCCcc-----ccccccchhcc
Q 043041 124 LDLSSNNIPGIIPKC-----FNNFTAMAQEK 149 (395)
Q Consensus 124 L~l~~n~l~~~~~~~-----~~~l~~L~~l~ 149 (395)
|.|..|.-.|.-+.. +.-+++|+.|+
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999999888765532 34556666555
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.22 E-value=0.0021 Score=33.20 Aligned_cols=12 Identities=50% Similarity=0.805 Sum_probs=5.0
Q ss_pred CCEEECCCCccc
Q 043041 24 LRILDLANNNFS 35 (395)
Q Consensus 24 L~~L~Ls~n~l~ 35 (395)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.07 E-value=0.0028 Score=32.69 Aligned_cols=18 Identities=44% Similarity=0.754 Sum_probs=8.3
Q ss_pred ccEEecccccCcccCchhc
Q 043041 48 IQILSLHNNSLTGELPSSL 66 (395)
Q Consensus 48 L~~L~L~~n~l~~~~p~~~ 66 (395)
|++|||++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444555555544 344333
No 69
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.89 E-value=0.028 Score=30.21 Aligned_cols=22 Identities=32% Similarity=0.255 Sum_probs=16.0
Q ss_pred CCCCCEEECCCCcccccCchhHh
Q 043041 69 CSLLILMDLGRNALSGEIPKWIG 91 (395)
Q Consensus 69 l~~L~~L~ls~n~l~~~ip~~~~ 91 (395)
+++|++|+|++|+++ .+|..++
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356777778777777 7777765
No 70
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.89 E-value=0.028 Score=30.21 Aligned_cols=22 Identities=32% Similarity=0.255 Sum_probs=16.0
Q ss_pred CCCCCEEECCCCcccccCchhHh
Q 043041 69 CSLLILMDLGRNALSGEIPKWIG 91 (395)
Q Consensus 69 l~~L~~L~ls~n~l~~~ip~~~~ 91 (395)
+++|++|+|++|+++ .+|..++
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356777778777777 7777765
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.85 E-value=0.016 Score=27.66 Aligned_cols=12 Identities=42% Similarity=0.589 Sum_probs=4.0
Q ss_pred CCEEECCCCccc
Q 043041 72 LILMDLGRNALS 83 (395)
Q Consensus 72 L~~L~ls~n~l~ 83 (395)
|++|++++|+++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 444444444443
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.75 E-value=0.0002 Score=68.99 Aligned_cols=85 Identities=31% Similarity=0.292 Sum_probs=46.4
Q ss_pred ccEEecccccCccc----CchhccCCCCCCEEECCCCcccccCchhHhhcC----CCccEEEccceeecc----ccCccC
Q 043041 48 IQILSLHNNSLTGE----LPSSLQNCSLLILMDLGRNALSGEIPKWIGESL----PKLIVLSLMSNKFHG----IIPFQL 115 (395)
Q Consensus 48 L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l----~~L~~L~L~~n~l~~----~~p~~l 115 (395)
+..|.|.+|.+... +...+..+..|+.|++++|.+.+.--..+.+.+ ..+++|++..|.++. .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 66667777766632 223345566677777777777533222222222 234556666665542 233344
Q ss_pred CCCCCccEEEcccCCCC
Q 043041 116 CYLPFIQILDLSSNNIP 132 (395)
Q Consensus 116 ~~l~~L~~L~l~~n~l~ 132 (395)
.....++.++++.|.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLI 185 (478)
T ss_pred hcccchhHHHHHhcccc
Confidence 45566667777776664
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.73 E-value=0.00012 Score=70.66 Aligned_cols=108 Identities=25% Similarity=0.326 Sum_probs=58.6
Q ss_pred CCEEECCCCccccc----CCCCCCCCCCccEEecccccCcccCc----hhccCC-CCCCEEECCCCccccc----CchhH
Q 043041 24 LRILDLANNNFSGK----IPDSMGSLPNIQILSLHNNSLTGELP----SSLQNC-SLLILMDLGRNALSGE----IPKWI 90 (395)
Q Consensus 24 L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p----~~~~~l-~~L~~L~ls~n~l~~~----ip~~~ 90 (395)
+..|.|.+|.+... +..++.....|+.|++++|.+.+.-- ..+... ..+++|++..|.+++. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 56666666666532 22334556667777777776662211 112222 3455566666666532 23333
Q ss_pred hhcCCCccEEEccceeecc----ccCcc----CCCCCCccEEEcccCCCC
Q 043041 91 GESLPKLIVLSLMSNKFHG----IIPFQ----LCYLPFIQILDLSSNNIP 132 (395)
Q Consensus 91 ~~~l~~L~~L~L~~n~l~~----~~p~~----l~~l~~L~~L~l~~n~l~ 132 (395)
.. ...++.++++.|.+.. .++.. +....++++|++++|.++
T Consensus 169 ~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 169 EK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred hc-ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 33 5566666777666531 12222 334677888888888776
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.46 E-value=0.001 Score=56.45 Aligned_cols=89 Identities=17% Similarity=0.202 Sum_probs=72.1
Q ss_pred CCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCCCccEEEccceeeccccCccCCCCC
Q 043041 40 DSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLP 119 (395)
Q Consensus 40 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 119 (395)
..+......+.||++.|++- ..-..|.-++.|+.||++.|.+. .+|.+..+ ...++.+++..|..+ ..|.+++..+
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q-~~e~~~~~~~~n~~~-~~p~s~~k~~ 111 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQ-QRETVNAASHKNNHS-QQPKSQKKEP 111 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHH-HHHHHHHHhhccchh-hCCccccccC
Confidence 34566778888999988877 55667777888889999999988 88888874 778888888888877 7788889999
Q ss_pred CccEEEcccCCCC
Q 043041 120 FIQILDLSSNNIP 132 (395)
Q Consensus 120 ~L~~L~l~~n~l~ 132 (395)
.++++++-.|.+.
T Consensus 112 ~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 112 HPKKNEQKKTEFF 124 (326)
T ss_pred CcchhhhccCcch
Confidence 9999988888754
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.16 E-value=0.0008 Score=57.03 Aligned_cols=89 Identities=20% Similarity=0.241 Sum_probs=76.7
Q ss_pred CCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCC
Q 043041 16 DCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLP 95 (395)
Q Consensus 16 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~ 95 (395)
..+...+..+.||++.|++. ..-..|.-++.|..||++.|.+. ..|..+.....++.+++..|..+ ..|.... ..+
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~-k~~ 111 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQK-KEP 111 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcccc-ccC
Confidence 34667888999999999987 45556778889999999999998 88999999999999999999998 8998887 499
Q ss_pred CccEEEccceeec
Q 043041 96 KLIVLSLMSNKFH 108 (395)
Q Consensus 96 ~L~~L~L~~n~l~ 108 (395)
.++++++..|.+.
T Consensus 112 ~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 112 HPKKNEQKKTEFF 124 (326)
T ss_pred CcchhhhccCcch
Confidence 9999999998865
No 76
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=92.58 E-value=0.05 Score=42.97 Aligned_cols=54 Identities=9% Similarity=-0.001 Sum_probs=23.4
Q ss_pred ehhhHHHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhhhhHHHHHHHHH
Q 043041 338 FYVSLILGFFSGFWGFCGTLLVKSSWRHRYYNFLTGIENWFYMTAVVNIAKLQR 391 (395)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (395)
+++++++|+.+.+++++++++|.++.|++.-.|++..-.-+.........+|++
T Consensus 50 IVIGvVVGVGg~ill~il~lvf~~c~r~kktdfidSdGkvvtay~~n~~~~~w~ 103 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALVFIFCIRRKKTDFIDSDGKVVTAYRSNKLTKWWY 103 (154)
T ss_pred EEEEEEecccHHHHHHHHHhheeEEEecccCccccCCCcEEEEEcCchHHHHHH
Confidence 344444443333333333333333333333466665544444444444555443
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.42 E-value=0.15 Score=27.27 Aligned_cols=13 Identities=46% Similarity=0.692 Sum_probs=6.3
Q ss_pred CccEEecccccCc
Q 043041 47 NIQILSLHNNSLT 59 (395)
Q Consensus 47 ~L~~L~L~~n~l~ 59 (395)
+|+.|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.42 E-value=0.15 Score=27.27 Aligned_cols=13 Identities=46% Similarity=0.692 Sum_probs=6.3
Q ss_pred CccEEecccccCc
Q 043041 47 NIQILSLHNNSLT 59 (395)
Q Consensus 47 ~L~~L~L~~n~l~ 59 (395)
+|+.|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.43 E-value=0.18 Score=26.37 Aligned_cols=13 Identities=31% Similarity=0.440 Sum_probs=5.0
Q ss_pred CCCEEECCCCccc
Q 043041 71 LLILMDLGRNALS 83 (395)
Q Consensus 71 ~L~~L~ls~n~l~ 83 (395)
+|++|++++|+++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4444444444443
No 80
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=86.90 E-value=0.54 Score=36.14 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=18.3
Q ss_pred eehhhHHHHHHHHHHHHHHHhhhccccchh
Q 043041 337 GFYVSLILGFFSGFWGFCGTLLVKSSWRHR 366 (395)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (395)
..++++++|+++|+++++++++|..+++++
T Consensus 64 ~~i~~Ii~gv~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 64 PAIIGIIFGVMAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred cceeehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356777778888777666655554444433
No 81
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=86.87 E-value=0.5 Score=45.98 Aligned_cols=113 Identities=21% Similarity=0.138 Sum_probs=66.1
Q ss_pred CCCCCCEEECCCCccccc--CCCCCCCCCCccEEecccc-cCcccCc----hhccCCCCCCEEECCCCc-ccccCchhHh
Q 043041 20 LFDRLRILDLANNNFSGK--IPDSMGSLPNIQILSLHNN-SLTGELP----SSLQNCSLLILMDLGRNA-LSGEIPKWIG 91 (395)
Q Consensus 20 ~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~L~~n-~l~~~~p----~~~~~l~~L~~L~ls~n~-l~~~ip~~~~ 91 (395)
.++.|+.|.+..+.-... .-.....++.|+.|+++++ ......+ .....+.+|+.|+++... ++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 367777777776632222 2233456788888888763 1111111 234456788888888877 5533334444
Q ss_pred hcCCCccEEEcccee-eccc-cCccCCCCCCccEEEcccCCCC
Q 043041 92 ESLPKLIVLSLMSNK-FHGI-IPFQLCYLPFIQILDLSSNNIP 132 (395)
Q Consensus 92 ~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~l~~n~l~ 132 (395)
..+++|++|.+.++. ++.. +-.....++.|++|+++.+...
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 457788888876665 3321 1122345677888888876553
No 82
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=85.21 E-value=0.23 Score=48.36 Aligned_cols=88 Identities=23% Similarity=0.148 Sum_probs=41.3
Q ss_pred cCCCCCCEEECCCC-cccccC----CCCCCCCCCccEEeccccc-CcccCchhccC-CCCCCEEECCCCc-ccccCchhH
Q 043041 19 PLFDRLRILDLANN-NFSGKI----PDSMGSLPNIQILSLHNNS-LTGELPSSLQN-CSLLILMDLGRNA-LSGEIPKWI 90 (395)
Q Consensus 19 ~~l~~L~~L~Ls~n-~l~~~~----p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~-l~~L~~L~ls~n~-l~~~ip~~~ 90 (395)
..+++|+.|+++++ ...... ......+++|+.|+++.+. +++..-..+.. +++|++|.+.++. ++..--..+
T Consensus 211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i 290 (482)
T KOG1947|consen 211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI 290 (482)
T ss_pred hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH
Confidence 34566666666542 111111 1122334566666666655 44222222222 5566666655554 343333334
Q ss_pred hhcCCCccEEEcccee
Q 043041 91 GESLPKLIVLSLMSNK 106 (395)
Q Consensus 91 ~~~l~~L~~L~L~~n~ 106 (395)
.+.+++|++|+++.+.
T Consensus 291 ~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 291 AERCPSLRELDLSGCH 306 (482)
T ss_pred HHhcCcccEEeeecCc
Confidence 4455666666666554
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.32 E-value=0.15 Score=42.66 Aligned_cols=81 Identities=25% Similarity=0.227 Sum_probs=57.4
Q ss_pred cccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcc-cCCccc-CCCCCCCEEECcCC-ccCccCcccccCCCCCCEE
Q 043041 195 LVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTG-QITPKI-GQLKSLDFLDLSRN-RFFGGIPSSLSLLSGLSVM 271 (395)
Q Consensus 195 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~-~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L 271 (395)
.++.+|-++..|..+--+-+..++.++.|.+.++.--+ ..-+.+ +-.++|+.|+|++| +|+..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 36888888888887777778888888888888775322 111111 13578999999977 6776655667788888888
Q ss_pred eCcC
Q 043041 272 DLSY 275 (395)
Q Consensus 272 ~Ls~ 275 (395)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7764
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=83.12 E-value=1 Score=24.13 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=7.4
Q ss_pred CCCCEEECCCCccc
Q 043041 70 SLLILMDLGRNALS 83 (395)
Q Consensus 70 ~~L~~L~ls~n~l~ 83 (395)
.+|+.|+++.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555554
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=81.31 E-value=1 Score=24.07 Aligned_cols=17 Identities=24% Similarity=0.499 Sum_probs=11.6
Q ss_pred CCCEEECCCCcccccCch
Q 043041 71 LLILMDLGRNALSGEIPK 88 (395)
Q Consensus 71 ~L~~L~ls~n~l~~~ip~ 88 (395)
+|+.|++++|+++ .+|.
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 5667777777776 6664
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.62 E-value=0.36 Score=40.48 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=15.1
Q ss_pred ccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 48 IQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 48 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++.+|-++..|..+--+.+.+++.++.|.+.++
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 444555555444333333444444444444444
No 87
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=77.01 E-value=3.3 Score=24.29 Aligned_cols=12 Identities=17% Similarity=0.310 Sum_probs=5.0
Q ss_pred ehhhHHHHHHHH
Q 043041 338 FYVSLILGFFSG 349 (395)
Q Consensus 338 ~~~~~~~~~~~~ 349 (395)
+++++++|+++.
T Consensus 8 IIv~V~vg~~ii 19 (38)
T PF02439_consen 8 IIVAVVVGMAII 19 (38)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=75.25 E-value=2.5 Score=23.03 Aligned_cols=14 Identities=50% Similarity=0.475 Sum_probs=9.0
Q ss_pred CCCCEEECcCCccC
Q 043041 242 KSLDFLDLSRNRFF 255 (395)
Q Consensus 242 ~~L~~L~Ls~N~l~ 255 (395)
++|+.|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45666677666665
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=75.00 E-value=1.6 Score=42.21 Aligned_cols=63 Identities=32% Similarity=0.271 Sum_probs=30.5
Q ss_pred CCCCccEEecccccCccc--CchhccCCCCCCEEECCCC--cccccCchhHhh-cCCCccEEEccceeec
Q 043041 44 SLPNIQILSLHNNSLTGE--LPSSLQNCSLLILMDLGRN--ALSGEIPKWIGE-SLPKLIVLSLMSNKFH 108 (395)
Q Consensus 44 ~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~ls~n--~l~~~ip~~~~~-~l~~L~~L~L~~n~l~ 108 (395)
+.+.+..++|++|++... +...-...++|++|+|++| .+. . ..++.+ +...|++|.+.+|.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~-~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-S-ESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-c-hhhhhhhcCCCHHHeeecCCccc
Confidence 345566666666665421 1111223456666667666 332 1 111110 2345666666666664
No 90
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=74.06 E-value=1.7 Score=25.92 Aligned_cols=11 Identities=9% Similarity=0.051 Sum_probs=4.4
Q ss_pred ehhhHHHHHHH
Q 043041 338 FYVSLILGFFS 348 (395)
Q Consensus 338 ~~~~~~~~~~~ 348 (395)
+..++++.+++
T Consensus 13 Ia~~VvVPV~v 23 (40)
T PF08693_consen 13 IAVGVVVPVGV 23 (40)
T ss_pred EEEEEEechHH
Confidence 33444444433
No 91
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=68.45 E-value=6.3 Score=23.15 Aligned_cols=20 Identities=10% Similarity=0.175 Sum_probs=13.1
Q ss_pred hhhHHHHHHHHHHHHHHHhh
Q 043041 339 YVSLILGFFSGFWGFCGTLL 358 (395)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~ 358 (395)
.+++++|+++|+.+++.+.+
T Consensus 5 ~IaIIv~V~vg~~iiii~~~ 24 (38)
T PF02439_consen 5 TIAIIVAVVVGMAIIIICMF 24 (38)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 56778888888765544433
No 92
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=67.35 E-value=4.7 Score=28.96 Aligned_cols=32 Identities=6% Similarity=-0.052 Sum_probs=19.3
Q ss_pred eeeeehhhHHHHHHHHHHHHHHHhhhccccch
Q 043041 334 ITLGFYVSLILGFFSGFWGFCGTLLVKSSWRH 365 (395)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (395)
...|.+++.+.|+++.+++++.+++++.+|+.
T Consensus 39 ~ayWpyLA~GGG~iLilIii~Lv~CC~~K~K~ 70 (98)
T PF07204_consen 39 VAYWPYLAAGGGLILILIIIALVCCCRAKHKT 70 (98)
T ss_pred HhhhHHhhccchhhhHHHHHHHHHHhhhhhhh
Confidence 34566676666666666665555555556653
No 93
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=66.35 E-value=3.1 Score=35.08 Aligned_cols=29 Identities=10% Similarity=0.198 Sum_probs=16.8
Q ss_pred eeeehhhHHHHHHHHHHHHHHHhhhcccc
Q 043041 335 TLGFYVSLILGFFSGFWGFCGTLLVKSSW 363 (395)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (395)
...+++++++|+++++++++++.++++++
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i~v~vR~CR 64 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFIVVLVRYCR 64 (221)
T ss_pred ceeeeeeeecchhhhHHHHHHHHHHHHHh
Confidence 35666777777666665555555554333
No 94
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=62.54 E-value=3.4 Score=38.81 Aligned_cols=113 Identities=20% Similarity=0.222 Sum_probs=56.5
Q ss_pred CCCCCCEEECCCCcc-cccCCCCC-CCCCCccEEeccccc-CcccCchhc-cCCCCCCEEECCCCcccccC-chhHhhcC
Q 043041 20 LFDRLRILDLANNNF-SGKIPDSM-GSLPNIQILSLHNNS-LTGELPSSL-QNCSLLILMDLGRNALSGEI-PKWIGESL 94 (395)
Q Consensus 20 ~l~~L~~L~Ls~n~l-~~~~p~~~-~~l~~L~~L~L~~n~-l~~~~p~~~-~~l~~L~~L~ls~n~l~~~i-p~~~~~~l 94 (395)
.+..|+.|+.++..- +...-.++ .+..+|++|-++.++ ++..--..+ .+++.|+.+++..+...-.- -..+..++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 456677777766532 22221222 345677777777765 221111111 24566777777766443111 01122246
Q ss_pred CCccEEEccceeecccc-----CccCCCCCCccEEEcccCCCC
Q 043041 95 PKLIVLSLMSNKFHGII-----PFQLCYLPFIQILDLSSNNIP 132 (395)
Q Consensus 95 ~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~l~~n~l~ 132 (395)
+.|+.+.++++...... ...-..+..|..+.++++...
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence 67777777766532111 112234556666777666543
No 95
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=61.38 E-value=7.1 Score=30.81 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhccccchhh
Q 043041 340 VSLILGFFSGFWGFCGTLLVKSSWRHRY 367 (395)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (395)
+++++|+.+.++++++.+-+.+.|+++.
T Consensus 10 v~i~igi~Ll~lLl~cgiGcvwhwkhr~ 37 (158)
T PF11770_consen 10 VAISIGISLLLLLLLCGIGCVWHWKHRD 37 (158)
T ss_pred HHHHHHHHHHHHHHHHhcceEEEeeccC
Confidence 4445555555566666666666666644
No 96
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=58.09 E-value=3.2 Score=30.56 Aligned_cols=11 Identities=0% Similarity=0.066 Sum_probs=4.7
Q ss_pred ehhhHHHHHHH
Q 043041 338 FYVSLILGFFS 348 (395)
Q Consensus 338 ~~~~~~~~~~~ 348 (395)
.++++++++++
T Consensus 67 aiagi~vg~~~ 77 (96)
T PTZ00382 67 AIAGISVAVVA 77 (96)
T ss_pred cEEEEEeehhh
Confidence 34444444443
No 97
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=57.69 E-value=6.6 Score=45.74 Aligned_cols=32 Identities=28% Similarity=0.297 Sum_probs=21.0
Q ss_pred eCCCCcCcccCCcccCCCCCCCEEECcCCccC
Q 043041 224 NLSRNNLTGQITPKIGQLKSLDFLDLSRNRFF 255 (395)
Q Consensus 224 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 255 (395)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46677776555556666677777777776654
No 98
>PF15102 TMEM154: TMEM154 protein family
Probab=57.39 E-value=11 Score=29.84 Aligned_cols=13 Identities=8% Similarity=-0.023 Sum_probs=5.6
Q ss_pred HHHHhhhccccch
Q 043041 353 FCGTLLVKSSWRH 365 (395)
Q Consensus 353 ~~~~~~~~~~~~~ 365 (395)
+++++++.+|||.
T Consensus 75 vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 75 VVCLVIYYKRKRT 87 (146)
T ss_pred HHHheeEEeeccc
Confidence 3333334445544
No 99
>PF15050 SCIMP: SCIMP protein
Probab=57.13 E-value=11 Score=28.54 Aligned_cols=14 Identities=21% Similarity=0.375 Sum_probs=6.0
Q ss_pred HHHHhhhccccchh
Q 043041 353 FCGTLLVKSSWRHR 366 (395)
Q Consensus 353 ~~~~~~~~~~~~~~ 366 (395)
+..+++|..||..+
T Consensus 23 lglIlyCvcR~~lR 36 (133)
T PF15050_consen 23 LGLILYCVCRWQLR 36 (133)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 100
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=54.65 E-value=7 Score=38.10 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=16.7
Q ss_pred CCCCCEEECCCCcccccCc--hhHhhcCCCccEEEccce
Q 043041 69 CSLLILMDLGRNALSGEIP--KWIGESLPKLIVLSLMSN 105 (395)
Q Consensus 69 l~~L~~L~ls~n~l~~~ip--~~~~~~l~~L~~L~L~~n 105 (395)
.+.+..+.|++|++. .+. ..+.+..|+|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred Ccceeeeecccchhh-chhhhhHHHHhcchhheeecccc
Confidence 344455555555543 222 122233455555555555
No 101
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=51.22 E-value=18 Score=24.41 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=17.3
Q ss_pred eehhhHHHHHHHHHHHHHHHhhhcccc
Q 043041 337 GFYVSLILGFFSGFWGFCGTLLVKSSW 363 (395)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (395)
|..++++.++++++...+.-++|+.+.
T Consensus 33 W~aIGvi~gi~~~~lt~ltN~YFK~k~ 59 (68)
T PF04971_consen 33 WAAIGVIGGIFFGLLTYLTNLYFKIKE 59 (68)
T ss_pred chhHHHHHHHHHHHHHHHhHhhhhhhH
Confidence 556677777777766666666665544
No 102
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=50.18 E-value=5.2 Score=26.62 Aligned_cols=12 Identities=25% Similarity=0.415 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHH
Q 043041 339 YVSLILGFFSGF 350 (395)
Q Consensus 339 ~~~~~~~~~~~~ 350 (395)
.+++++|.++++
T Consensus 11 laavIaG~Vvgl 22 (64)
T PF01034_consen 11 LAAVIAGGVVGL 22 (64)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 103
>PRK00523 hypothetical protein; Provisional
Probab=50.15 E-value=19 Score=24.72 Aligned_cols=30 Identities=17% Similarity=-0.003 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhccccchhhhh
Q 043041 340 VSLILGFFSGFWGFCGTLLVKSSWRHRYYN 369 (395)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (395)
+++++++++.++++++.+++.+++-.+|+.
T Consensus 6 l~I~l~i~~li~G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555566666666555554
No 104
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=49.28 E-value=17 Score=25.34 Aligned_cols=9 Identities=22% Similarity=0.475 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 043041 342 LILGFFSGF 350 (395)
Q Consensus 342 ~~~~~~~~~ 350 (395)
+++|+++.+
T Consensus 6 ~~~g~~~ll 14 (75)
T PF14575_consen 6 IIVGVLLLL 14 (75)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334443333
No 105
>PRK01844 hypothetical protein; Provisional
Probab=48.72 E-value=21 Score=24.47 Aligned_cols=27 Identities=11% Similarity=0.283 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhhhccccchhhhh
Q 043041 343 ILGFFSGFWGFCGTLLVKSSWRHRYYN 369 (395)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (395)
++++++.++++++.+++.+++-.+|+.
T Consensus 8 ~l~I~~li~G~~~Gff~ark~~~k~lk 34 (72)
T PRK01844 8 LVGVVALVAGVALGFFIARKYMMNYLQ 34 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455556666665555554
No 106
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=47.09 E-value=88 Score=30.30 Aligned_cols=17 Identities=29% Similarity=0.235 Sum_probs=11.5
Q ss_pred CccEEEcccCCCCCCCC
Q 043041 120 FIQILDLSSNNIPGIIP 136 (395)
Q Consensus 120 ~L~~L~l~~n~l~~~~~ 136 (395)
.+++|+..+|.+.+...
T Consensus 355 R~q~l~~rdnnldgeg~ 371 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGG 371 (553)
T ss_pred eeeEeeccccccccccc
Confidence 37777777777766543
No 107
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=46.38 E-value=10 Score=29.06 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhccccchhhhhh
Q 043041 343 ILGFFSGFWGFCGTLLVKSSWRHRYYNF 370 (395)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (395)
+.++++++.++.+++++++++|++.|..
T Consensus 85 al~v~lVl~llsg~lv~rrcrrr~~~tt 112 (129)
T PF12191_consen 85 ALSVVLVLALLSGFLVWRRCRRREKFTT 112 (129)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccCCC
Confidence 3333333334445555555555555554
No 108
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=44.57 E-value=13 Score=35.12 Aligned_cols=113 Identities=22% Similarity=0.235 Sum_probs=74.8
Q ss_pred cCCCCCCEEECCCCc-ccccCCCCC-CCCCCccEEecccccCc--ccCchhccCCCCCCEEECCCCcccccCc----hhH
Q 043041 19 PLFDRLRILDLANNN-FSGKIPDSM-GSLPNIQILSLHNNSLT--GELPSSLQNCSLLILMDLGRNALSGEIP----KWI 90 (395)
Q Consensus 19 ~~l~~L~~L~Ls~n~-l~~~~p~~~-~~l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~ls~n~l~~~ip----~~~ 90 (395)
.+..+|+.|-++.++ ++..--..+ .+.+.|+.+++..+... +.+...-.+++.|+.|.++++.....-. ...
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~ 396 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS 396 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence 467899999999986 443222223 36789999999888754 1122233467899999999886532220 111
Q ss_pred hhcCCCccEEEccceeec-cccCccCCCCCCccEEEcccCCC
Q 043041 91 GESLPKLIVLSLMSNKFH-GIIPFQLCYLPFIQILDLSSNNI 131 (395)
Q Consensus 91 ~~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~l~~n~l 131 (395)
...+..|+.+.++++... ...-..+...++|+.+++-+++-
T Consensus 397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred cccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 235778999999998754 33334567788999988877654
No 109
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=43.45 E-value=20 Score=32.46 Aligned_cols=14 Identities=7% Similarity=-0.071 Sum_probs=5.5
Q ss_pred HHHHHHHhhhcccc
Q 043041 350 FWGFCGTLLVKSSW 363 (395)
Q Consensus 350 ~~~~~~~~~~~~~~ 363 (395)
+++++..+++++||
T Consensus 270 LIMvIIYLILRYRR 283 (299)
T PF02009_consen 270 LIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444333
No 110
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=41.85 E-value=17 Score=42.68 Aligned_cols=32 Identities=22% Similarity=0.216 Sum_probs=27.0
Q ss_pred ecccccCcccCchhccCCCCCCEEECCCCccc
Q 043041 52 SLHNNSLTGELPSSLQNCSLLILMDLGRNALS 83 (395)
Q Consensus 52 ~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~ 83 (395)
||++|+|+.+.+..|..+.+|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68889999777778888999999999998775
No 111
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=40.60 E-value=30 Score=25.81 Aligned_cols=27 Identities=19% Similarity=0.123 Sum_probs=14.6
Q ss_pred eeehhhHHHHHHHHHHHHHHHhhhccc
Q 043041 336 LGFYVSLILGFFSGFWGFCGTLLVKSS 362 (395)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (395)
.++|-++++|.++..+++..+++|...
T Consensus 54 lg~ysawgagsfiatliillviffviy 80 (150)
T PF06084_consen 54 LGIYSAWGAGSFIATLIILLVIFFVIY 80 (150)
T ss_pred hhhhhhcccchHHHHHHHHHHHhheeE
Confidence 345666666666655555444444333
No 112
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=37.51 E-value=30 Score=21.91 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=13.4
Q ss_pred HHHHHHhhhccccchhhhhhhhh
Q 043041 351 WGFCGTLLVKSSWRHRYYNFLTG 373 (395)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~ 373 (395)
+++.++.++...++..|.+..+.
T Consensus 13 ~~lLg~~I~~~~K~ygYkht~d~ 35 (50)
T PF12606_consen 13 MGLLGLSICTTLKAYGYKHTVDP 35 (50)
T ss_pred HHHHHHHHHHHhhccccccccCC
Confidence 34445555556666666666665
No 113
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=36.71 E-value=26 Score=18.37 Aligned_cols=13 Identities=31% Similarity=0.248 Sum_probs=9.3
Q ss_pred CCCCCEEeCcCCc
Q 043041 265 LSGLSVMDLSYNN 277 (395)
Q Consensus 265 l~~L~~L~Ls~N~ 277 (395)
+++|+.|+++++.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4677888887764
No 114
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=36.02 E-value=45 Score=22.37 Aligned_cols=12 Identities=17% Similarity=0.531 Sum_probs=5.0
Q ss_pred hhHHHHHHHHHH
Q 043041 340 VSLILGFFSGFW 351 (395)
Q Consensus 340 ~~~~~~~~~~~~ 351 (395)
+.+.+++++|++
T Consensus 22 l~il~~f~~G~l 33 (68)
T PF06305_consen 22 LLILIAFLLGAL 33 (68)
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 115
>PF15179 Myc_target_1: Myc target protein 1
Probab=35.30 E-value=30 Score=28.43 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=13.0
Q ss_pred eehhhHHHHHHHHHHHHHHHhhh
Q 043041 337 GFYVSLILGFFSGFWGFCGTLLV 359 (395)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~ 359 (395)
.+-+++++|+++|.++.+.+.+.
T Consensus 24 aF~vSm~iGLviG~li~~Lltwl 46 (197)
T PF15179_consen 24 AFCVSMAIGLVIGALIWALLTWL 46 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466677776666554444444
No 116
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=33.49 E-value=43 Score=26.81 Aligned_cols=36 Identities=11% Similarity=0.098 Sum_probs=22.8
Q ss_pred ceeeeehhhHHHHHHHHHHHHHHHhhhccccchhhhh
Q 043041 333 FITLGFYVSLILGFFSGFWGFCGTLLVKSSWRHRYYN 369 (395)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (395)
....++.++++++++++++ ++++++|++++|-.+..
T Consensus 49 nIVIGvVVGVGg~ill~il-~lvf~~c~r~kktdfid 84 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILLGIL-ALVFIFCIRRKKTDFID 84 (154)
T ss_pred cEEEEEEecccHHHHHHHH-HhheeEEEecccCcccc
Confidence 3467788888887776654 44466666665555544
No 117
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=33.01 E-value=38 Score=31.32 Aligned_cols=24 Identities=13% Similarity=0.014 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHhhhccccc
Q 043041 341 SLILGFFSGFWGFCGTLLVKSSWR 364 (395)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~ 364 (395)
++++.+++++++|+..++.++|++
T Consensus 315 SiIAIvvIVLIMvIIYLILRYRRK 338 (353)
T TIGR01477 315 SIIAILIIVLIMVIIYLILRYRRK 338 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 333333333344444444444444
No 118
>PTZ00046 rifin; Provisional
Probab=32.90 E-value=41 Score=31.18 Aligned_cols=24 Identities=8% Similarity=-0.038 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHhhhccccc
Q 043041 341 SLILGFFSGFWGFCGTLLVKSSWR 364 (395)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~ 364 (395)
++++.+++++++|+..++.++||+
T Consensus 320 SiiAIvVIVLIMvIIYLILRYRRK 343 (358)
T PTZ00046 320 SIVAIVVIVLIMVIIYLILRYRRK 343 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 333333333344444444444444
No 119
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=31.30 E-value=47 Score=23.28 Aligned_cols=29 Identities=7% Similarity=0.054 Sum_probs=14.3
Q ss_pred eehhhHHHH-HHHHHHHHHHHhhhccccch
Q 043041 337 GFYVSLILG-FFSGFWGFCGTLLVKSSWRH 365 (395)
Q Consensus 337 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 365 (395)
+..++++++ +++.++++.+++++.+.+++
T Consensus 34 g~LaGiV~~D~vlTLLIv~~vy~car~r~r 63 (79)
T PF07213_consen 34 GLLAGIVAADAVLTLLIVLVVYYCARPRRR 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccC
Confidence 345555554 33344455555555554443
No 120
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=31.25 E-value=8.7 Score=28.77 Aligned_cols=7 Identities=14% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHhhh
Q 043041 353 FCGTLLV 359 (395)
Q Consensus 353 ~~~~~~~ 359 (395)
++.+++|
T Consensus 41 liGCWYc 47 (118)
T PF14991_consen 41 LIGCWYC 47 (118)
T ss_dssp -------
T ss_pred HHhheee
Confidence 3333333
No 121
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=31.20 E-value=1.4e+02 Score=20.83 Aligned_cols=15 Identities=7% Similarity=0.177 Sum_probs=6.6
Q ss_pred hhhhHHHHHHHHHhh
Q 043041 379 YMTAVVNIAKLQRRF 393 (395)
Q Consensus 379 ~~~~~~~~~~~~~~~ 393 (395)
-..+..+-.|.+.|.
T Consensus 44 L~~L~~~a~rm~eRI 58 (75)
T PF06667_consen 44 LQELYEQAERMEERI 58 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444454443
No 122
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=30.95 E-value=33 Score=28.46 Aligned_cols=13 Identities=31% Similarity=0.496 Sum_probs=5.7
Q ss_pred eehhhHHHHHHHH
Q 043041 337 GFYVSLILGFFSG 349 (395)
Q Consensus 337 ~~~~~~~~~~~~~ 349 (395)
+++++++++++++
T Consensus 79 ~iivgvi~~Vi~I 91 (179)
T PF13908_consen 79 GIIVGVICGVIAI 91 (179)
T ss_pred eeeeehhhHHHHH
Confidence 3444444444443
No 123
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=29.08 E-value=68 Score=27.33 Aligned_cols=37 Identities=11% Similarity=-0.031 Sum_probs=20.1
Q ss_pred ceeeeehhhHHHHHHHHHHHHHHHhhhccccchhhhh
Q 043041 333 FITLGFYVSLILGFFSGFWGFCGTLLVKSSWRHRYYN 369 (395)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (395)
..+...+++.++++++++++++++.+|+.+-+..-++
T Consensus 37 ~~I~iaiVAG~~tVILVI~i~v~vR~CRq~~~k~g~Q 73 (221)
T PF08374_consen 37 VKIMIAIVAGIMTVILVIFIVVLVRYCRQSPHKKGYQ 73 (221)
T ss_pred eeeeeeeecchhhhHHHHHHHHHHHHHhhccccchhh
Confidence 3344444444555555666666668777544443333
No 124
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=28.74 E-value=65 Score=23.71 Aligned_cols=7 Identities=14% Similarity=0.449 Sum_probs=2.8
Q ss_pred hhhHHHH
Q 043041 339 YVSLILG 345 (395)
Q Consensus 339 ~~~~~~~ 345 (395)
+++++++
T Consensus 20 LVGVv~~ 26 (102)
T PF15176_consen 20 LVGVVVT 26 (102)
T ss_pred HHHHHHH
Confidence 3444433
No 125
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=28.60 E-value=48 Score=33.14 Aligned_cols=21 Identities=5% Similarity=-0.059 Sum_probs=13.5
Q ss_pred eeeehhhHHHHHHHHHHHHHH
Q 043041 335 TLGFYVSLILGFFSGFWGFCG 355 (395)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~ 355 (395)
..|+++++++.++++++++++
T Consensus 268 NlWII~gVlvPv~vV~~Iiii 288 (684)
T PF12877_consen 268 NLWIIAGVLVPVLVVLLIIII 288 (684)
T ss_pred CeEEEehHhHHHHHHHHHHHH
Confidence 478888887766665544433
No 126
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=28.51 E-value=1.5e+02 Score=23.83 Aligned_cols=43 Identities=7% Similarity=-0.002 Sum_probs=19.4
Q ss_pred HHHHHHHHhhhccccchhhhhhhhhhhhhhhhhhHHHHHHHHH
Q 043041 349 GFWGFCGTLLVKSSWRHRYYNFLTGIENWFYMTAVVNIAKLQR 391 (395)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (395)
.+++++++.+++.|..-+|....--..--.......|+..|++
T Consensus 28 ~~l~~~~~~Y~r~r~~tKyRDL~II~~L~ll~l~giq~~~y~~ 70 (149)
T PF11694_consen 28 LVLIFFFIKYLRNRLDTKYRDLSIIALLLLLLLIGIQYSDYQQ 70 (149)
T ss_pred HHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555554444433322233333444556665543
No 127
>PF15102 TMEM154: TMEM154 protein family
Probab=28.42 E-value=34 Score=27.18 Aligned_cols=31 Identities=0% Similarity=0.023 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHHHHHHHhhhccccchhhhh
Q 043041 339 YVSLILGFFSGFWGFCGTLLVKSSWRHRYYN 369 (395)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (395)
++.++|..++++++++.++++..+.|||.-+
T Consensus 58 iLmIlIP~VLLvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred EEEEeHHHHHHHHHHHHHHHheeEEeecccC
Confidence 4445555566667788888888888777653
No 128
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=26.67 E-value=21 Score=28.75 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=0.0
Q ss_pred eehhhHHHHHHHHHHHHHHH-hhhccccchhh
Q 043041 337 GFYVSLILGFFSGFWGFCGT-LLVKSSWRHRY 367 (395)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 367 (395)
..++++++|+++++.++.++ +++.|++.-||
T Consensus 129 ~tLVGIIVGVLlaIG~igGIIivvvRKmSGRy 160 (162)
T PF05808_consen 129 VTLVGIIVGVLLAIGFIGGIIIVVVRKMSGRY 160 (162)
T ss_dssp --------------------------------
T ss_pred eeeeeehhhHHHHHHHHhheeeEEeehhcccc
Confidence 35667777776665444433 33344444444
No 129
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=26.49 E-value=97 Score=19.04 Aligned_cols=20 Identities=25% Similarity=0.648 Sum_probs=9.6
Q ss_pred hhHHHHHHHHHHHHHHHhhh
Q 043041 340 VSLILGFFSGFWGFCGTLLV 359 (395)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~ 359 (395)
+-.+.|+++.+++++.+.++
T Consensus 9 L~~~F~~lIC~Fl~~~~~F~ 28 (54)
T PF06716_consen 9 LLLAFGFLICLFLFCLVVFI 28 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444555555554444444
No 130
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=26.31 E-value=74 Score=26.16 Aligned_cols=31 Identities=6% Similarity=0.158 Sum_probs=13.2
Q ss_pred eehhhHHHHHHHHHHHHHHHhhhccccchhhh
Q 043041 337 GFYVSLILGFFSGFWGFCGTLLVKSSWRHRYY 368 (395)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (395)
.++.+|+.++++.++..+ .-|+.+.+|+..|
T Consensus 115 g~IaGIvsav~valvGAv-sSyiaYqkKKlCF 145 (169)
T PF12301_consen 115 GTIAGIVSAVVVALVGAV-SSYIAYQKKKLCF 145 (169)
T ss_pred chhhhHHHHHHHHHHHHH-HHHHHHHhhccce
Confidence 345555544444443333 3344444433333
No 131
>PF11240 DUF3042: Protein of unknown function (DUF3042); InterPro: IPR021402 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=25.60 E-value=1.9e+02 Score=18.66 Aligned_cols=16 Identities=25% Similarity=0.160 Sum_probs=9.9
Q ss_pred hhhHHHHHHHHHhhcC
Q 043041 380 MTAVVNIAKLQRRFRS 395 (395)
Q Consensus 380 ~~~~~~~~~~~~~~~~ 395 (395)
.++-.++.+..||.++
T Consensus 39 ~~~eenRkkA~RK~~a 54 (54)
T PF11240_consen 39 AKIEENRKKAARKRRA 54 (54)
T ss_pred HHHHHHHHHHHhhccC
Confidence 4556677777666543
No 132
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=25.49 E-value=52 Score=24.43 Aligned_cols=18 Identities=11% Similarity=0.002 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 043041 344 LGFFSGFWGFCGTLLVKS 361 (395)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~ 361 (395)
++++++++++.++.+|..
T Consensus 69 ls~v~IlVily~IyYFVI 86 (101)
T PF06024_consen 69 LSFVCILVILYAIYYFVI 86 (101)
T ss_pred HHHHHHHHHHhhheEEEE
Confidence 334333444444444433
No 133
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=25.26 E-value=24 Score=34.09 Aligned_cols=7 Identities=14% Similarity=0.040 Sum_probs=0.0
Q ss_pred hhhhhhh
Q 043041 375 ENWFYMT 381 (395)
Q Consensus 375 ~~~~~~~ 381 (395)
....|..
T Consensus 392 ~~~~Yts 398 (439)
T PF02480_consen 392 FSPVYTS 398 (439)
T ss_dssp -------
T ss_pred CCCcccc
Confidence 3334433
No 134
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=25.04 E-value=40 Score=26.30 Aligned_cols=24 Identities=13% Similarity=0.050 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHhhhccccchh
Q 043041 343 ILGFFSGFWGFCGTLLVKSSWRHR 366 (395)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~ 366 (395)
++++++++++++++++++.++|++
T Consensus 5 ~~iii~~i~l~~~~~~~~~rRR~r 28 (130)
T PF12273_consen 5 FAIIIVAILLFLFLFYCHNRRRRR 28 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444433
No 135
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=24.81 E-value=30 Score=29.02 Aligned_cols=19 Identities=5% Similarity=-0.137 Sum_probs=7.5
Q ss_pred hhhHHHHHHHHHHHHHHHh
Q 043041 339 YVSLILGFFSGFWGFCGTL 357 (395)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~ 357 (395)
.++|++-++++++++++++
T Consensus 159 ~laI~lPvvv~~~~~~~~~ 177 (189)
T PF14610_consen 159 ALAIALPVVVVVLALIMYG 177 (189)
T ss_pred eEEEEccHHHHHHHHHHHh
Confidence 3444444444433333333
No 136
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=24.28 E-value=1.7e+02 Score=23.31 Aligned_cols=10 Identities=30% Similarity=0.388 Sum_probs=3.9
Q ss_pred hccccchhhh
Q 043041 359 VKSSWRHRYY 368 (395)
Q Consensus 359 ~~~~~~~~~~ 368 (395)
.+++++.+|.
T Consensus 42 ~r~~~~~~yr 51 (146)
T PF14316_consen 42 WRRWRRNRYR 51 (146)
T ss_pred HHHHHccHHH
Confidence 3333433443
No 137
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.97 E-value=85 Score=24.24 Aligned_cols=31 Identities=6% Similarity=0.147 Sum_probs=15.3
Q ss_pred eeeehhhHHHHHHHHHHHHHHHhhhccccchh
Q 043041 335 TLGFYVSLILGFFSGFWGFCGTLLVKSSWRHR 366 (395)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (395)
..++++++++|++. +.+++.+++.+++++..
T Consensus 66 i~~Ii~gv~aGvIg-~Illi~y~irR~~Kk~~ 96 (122)
T PF01102_consen 66 IIGIIFGVMAGVIG-IILLISYCIRRLRKKSS 96 (122)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHS----
T ss_pred eeehhHHHHHHHHH-HHHHHHHHHHHHhccCC
Confidence 45566666666543 44555555666655543
No 138
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=23.16 E-value=88 Score=24.20 Aligned_cols=22 Identities=27% Similarity=0.172 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHhhhccccc
Q 043041 343 ILGFFSGFWGFCGTLLVKSSWR 364 (395)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~ 364 (395)
++++.+++.++++..++.++.|
T Consensus 106 il~il~~i~is~~~~~~yr~~r 127 (139)
T PHA03099 106 IVLVLVGIIITCCLLSVYRFTR 127 (139)
T ss_pred HHHHHHHHHHHHHHHhhheeee
Confidence 3444444444444444433333
No 139
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=22.88 E-value=79 Score=30.61 Aligned_cols=106 Identities=22% Similarity=0.201 Sum_probs=57.7
Q ss_pred CCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccC------CCCCCEEECCCCcccccCchhHhhc--
Q 043041 22 DRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQN------CSLLILMDLGRNALSGEIPKWIGES-- 93 (395)
Q Consensus 22 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~------l~~L~~L~ls~n~l~~~ip~~~~~~-- 93 (395)
+.++++|++.|.+....|-.+..= ---+.++.+.++. ..|.. -..+.+++++.|.....+|..+-..
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p--~~pl~lr~c~lss---kfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~ 239 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQP--GNPLSLRVCELSS---KFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAG 239 (553)
T ss_pred chhhhhccCCCcccccCCccccCC--CCccchhhhhhhh---hHHHHhhhhhccccccccccccCCCCccchhHHHHhhh
Confidence 455667777776665555444320 0014445554441 11211 1247888888888887887655421
Q ss_pred CCCccEEEccceeec---cccCccCCCCCCccEEEcccCCCC
Q 043041 94 LPKLIVLSLMSNKFH---GIIPFQLCYLPFIQILDLSSNNIP 132 (395)
Q Consensus 94 l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~l~~n~l~ 132 (395)
-.-++.++.+...+. +.-+...+.-+.++..+++.|..+
T Consensus 240 ~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s 281 (553)
T KOG4242|consen 240 TLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTS 281 (553)
T ss_pred hhhhhcccccccccchhhcccccccccccccchhhhccCCCC
Confidence 234566666665543 112333445567777788777654
No 140
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=20.86 E-value=2.8e+02 Score=19.32 Aligned_cols=14 Identities=14% Similarity=0.261 Sum_probs=6.2
Q ss_pred hhhHHHHHHHHHhh
Q 043041 380 MTAVVNIAKLQRRF 393 (395)
Q Consensus 380 ~~~~~~~~~~~~~~ 393 (395)
..+..+-.|.+.|.
T Consensus 45 ~~L~~~a~rm~eRI 58 (75)
T TIGR02976 45 QELYAKADRLEERI 58 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444454443
No 141
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.60 E-value=78 Score=24.68 Aligned_cols=11 Identities=36% Similarity=1.023 Sum_probs=5.1
Q ss_pred hhHHHHHHHHH
Q 043041 340 VSLILGFFSGF 350 (395)
Q Consensus 340 ~~~~~~~~~~~ 350 (395)
+++++|+++|+
T Consensus 4 i~lvvG~iiG~ 14 (128)
T PF06295_consen 4 IGLVVGLIIGF 14 (128)
T ss_pred HHHHHHHHHHH
Confidence 44444554443
No 142
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=20.21 E-value=1e+02 Score=24.46 Aligned_cols=28 Identities=11% Similarity=0.017 Sum_probs=13.0
Q ss_pred ehhhHHHHHHHHHHHHHHHhhhccccch
Q 043041 338 FYVSLILGFFSGFWGFCGTLLVKSSWRH 365 (395)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (395)
+++++.+.+++.+++++.+++..++.|+
T Consensus 121 lilaisvtvv~~iliii~CLiei~shr~ 148 (154)
T PF14914_consen 121 LILAISVTVVVMILIIIFCLIEICSHRR 148 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4555555444444444444444444433
Done!