Query 043041
Match_columns 395
No_of_seqs 404 out of 3660
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 21:30:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043041.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043041hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.3E-43 1.1E-47 360.0 25.5 311 1-313 397-751 (768)
2 1ogq_A PGIP-2, polygalacturona 100.0 3.3E-40 1.1E-44 302.7 17.4 254 2-310 54-312 (313)
3 3rgz_A Protein brassinosteroid 100.0 5.9E-38 2E-42 321.1 23.2 294 2-304 347-719 (768)
4 3v47_A TOLL-like receptor 5B a 100.0 5.3E-35 1.8E-39 282.1 25.6 299 1-299 33-405 (455)
5 2id5_A Lingo-1, leucine rich r 100.0 7.7E-34 2.6E-38 275.6 23.4 290 1-299 35-330 (477)
6 1ogq_A PGIP-2, polygalacturona 100.0 1E-34 3.5E-39 266.1 12.6 226 1-281 79-306 (313)
7 2id5_A Lingo-1, leucine rich r 100.0 6.4E-34 2.2E-38 276.2 18.5 296 1-305 59-360 (477)
8 3v47_A TOLL-like receptor 5B a 100.0 3.6E-33 1.2E-37 269.2 22.7 287 1-288 57-417 (455)
9 3t6q_A CD180 antigen; protein- 100.0 1.4E-32 4.8E-37 274.6 24.0 290 1-299 257-557 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 6.4E-33 2.2E-37 286.7 20.9 284 1-305 269-564 (844)
11 3o6n_A APL1; leucine-rich repe 100.0 2.3E-32 8E-37 258.3 20.9 291 1-299 48-349 (390)
12 4eco_A Uncharacterized protein 100.0 2.7E-32 9.2E-37 273.4 21.9 297 1-304 209-581 (636)
13 3t6q_A CD180 antigen; protein- 100.0 2.5E-32 8.6E-37 272.8 21.7 274 1-285 281-566 (606)
14 4eco_A Uncharacterized protein 100.0 9.5E-33 3.2E-37 276.6 17.9 284 7-305 192-529 (636)
15 1ozn_A Reticulon 4 receptor; N 100.0 4.2E-32 1.4E-36 245.5 19.2 243 2-299 15-258 (285)
16 1xku_A Decorin; proteoglycan, 100.0 2.1E-31 7.1E-36 246.1 24.1 263 1-301 34-305 (330)
17 4fcg_A Uncharacterized protein 100.0 3.4E-32 1.2E-36 250.8 18.6 221 22-299 81-311 (328)
18 3vq2_A TLR4, TOLL-like recepto 100.0 1.7E-31 5.9E-36 266.7 24.5 144 1-146 35-180 (606)
19 4g8a_A TOLL-like receptor 4; l 100.0 1E-31 3.5E-36 269.4 22.9 141 1-142 55-196 (635)
20 3oja_B Anopheles plasmodium-re 100.0 6.2E-32 2.1E-36 269.1 21.0 293 1-301 54-357 (597)
21 3j0a_A TOLL-like receptor 5; m 100.0 9.9E-32 3.4E-36 277.8 22.5 280 1-280 27-376 (844)
22 2ft3_A Biglycan; proteoglycan, 100.0 3.1E-31 1.1E-35 245.1 23.3 262 1-301 36-306 (332)
23 3zyi_A Leucine-rich repeat-con 100.0 2.5E-31 8.5E-36 256.1 23.3 249 2-283 58-307 (452)
24 3vq2_A TLR4, TOLL-like recepto 100.0 4.8E-31 1.6E-35 263.5 26.0 116 1-117 59-175 (606)
25 1xku_A Decorin; proteoglycan, 100.0 1.1E-30 3.7E-35 241.3 25.8 264 1-299 55-329 (330)
26 2z7x_B TOLL-like receptor 1, v 100.0 2.9E-31 1E-35 260.2 22.6 293 1-304 3-436 (520)
27 4ecn_A Leucine-rich repeat pro 100.0 4.5E-31 1.5E-35 269.9 24.3 294 1-302 451-819 (876)
28 2ft3_A Biglycan; proteoglycan, 100.0 6.5E-31 2.2E-35 243.0 22.8 263 1-299 57-330 (332)
29 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-31 4.1E-36 264.7 19.0 150 1-151 29-180 (549)
30 3zyi_A Leucine-rich repeat-con 100.0 7.8E-31 2.7E-35 252.7 23.7 251 23-305 55-307 (452)
31 4fcg_A Uncharacterized protein 100.0 2.5E-31 8.7E-36 245.0 19.4 223 1-279 84-314 (328)
32 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.6E-31 2.2E-35 260.1 23.4 114 191-305 350-466 (562)
33 3zyj_A Leucine-rich repeat-con 100.0 9.5E-31 3.3E-35 251.2 23.8 249 2-283 47-296 (440)
34 3zyj_A Leucine-rich repeat-con 100.0 6.1E-31 2.1E-35 252.5 22.3 225 1-255 67-292 (440)
35 2z66_A Variable lymphocyte rec 100.0 1.5E-31 5.2E-36 244.4 17.2 252 1-283 10-265 (306)
36 2z66_A Variable lymphocyte rec 100.0 4.5E-31 1.6E-35 241.2 20.3 245 25-301 10-260 (306)
37 2z7x_B TOLL-like receptor 1, v 100.0 2.6E-31 8.8E-36 260.6 19.9 296 1-306 24-461 (520)
38 2z63_A TOLL-like receptor 4, v 100.0 1.2E-30 4.1E-35 258.7 24.5 304 1-305 31-510 (570)
39 3o6n_A APL1; leucine-rich repe 100.0 1.3E-30 4.6E-35 246.3 23.2 283 1-303 72-376 (390)
40 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2E-30 6.9E-35 256.6 23.3 104 1-108 55-159 (562)
41 2z80_A TOLL-like receptor 2, v 100.0 1.6E-31 5.4E-36 249.2 13.9 268 3-283 36-318 (353)
42 1ziw_A TOLL-like receptor 3; i 100.0 2.8E-30 9.4E-35 261.4 24.1 277 2-305 333-626 (680)
43 1ziw_A TOLL-like receptor 3; i 100.0 1.5E-30 5E-35 263.4 22.0 299 1-300 28-364 (680)
44 3oja_B Anopheles plasmodium-re 100.0 3E-30 1E-34 257.0 23.3 290 1-305 78-384 (597)
45 4ecn_A Leucine-rich repeat pro 100.0 1.1E-31 3.8E-36 274.3 12.7 270 2-305 327-713 (876)
46 1ozn_A Reticulon 4 receptor; N 100.0 9.4E-31 3.2E-35 236.7 15.9 232 1-285 35-267 (285)
47 2z80_A TOLL-like receptor 2, v 100.0 9.3E-31 3.2E-35 244.0 14.2 254 19-303 28-316 (353)
48 2z81_A CD282 antigen, TOLL-lik 100.0 3.1E-30 1.1E-34 254.5 18.5 132 1-132 53-185 (549)
49 4fmz_A Internalin; leucine ric 100.0 7E-29 2.4E-33 230.7 22.2 273 1-301 47-323 (347)
50 2z62_A TOLL-like receptor 4, v 100.0 8.4E-29 2.9E-33 222.7 21.4 229 2-286 11-244 (276)
51 1wwl_A Monocyte differentiatio 100.0 7E-31 2.4E-35 240.6 5.2 242 3-303 48-310 (312)
52 4g8a_A TOLL-like receptor 4; l 100.0 8.9E-29 3E-33 248.0 20.4 110 1-111 79-189 (635)
53 1o6v_A Internalin A; bacterial 100.0 3.5E-28 1.2E-32 235.1 22.1 285 1-303 49-367 (466)
54 4fmz_A Internalin; leucine ric 100.0 8.1E-28 2.8E-32 223.5 22.9 274 1-301 69-345 (347)
55 1wwl_A Monocyte differentiatio 100.0 2.6E-30 9E-35 236.7 5.8 225 2-281 67-311 (312)
56 3oja_A Leucine-rich immune mol 100.0 1.2E-29 4.3E-34 245.9 10.8 217 21-279 33-250 (487)
57 3o53_A Protein LRIM1, AGAP0063 100.0 3.6E-30 1.2E-34 236.4 6.6 260 3-304 15-278 (317)
58 1o6v_A Internalin A; bacterial 100.0 8.9E-28 3.1E-32 232.2 22.3 289 1-307 71-393 (466)
59 3o53_A Protein LRIM1, AGAP0063 100.0 5E-29 1.7E-33 228.8 12.1 239 22-301 10-249 (317)
60 2o6q_A Variable lymphocyte rec 100.0 2.8E-27 9.5E-32 212.1 22.6 208 22-284 16-223 (270)
61 3oja_A Leucine-rich immune mol 100.0 1.1E-28 3.7E-33 239.3 14.0 222 41-303 29-252 (487)
62 2z63_A TOLL-like receptor 4, v 100.0 7.1E-28 2.4E-32 238.7 18.8 263 2-299 261-528 (570)
63 3bz5_A Internalin-J, INLJ; leu 100.0 4.7E-27 1.6E-31 225.9 23.6 272 1-305 45-334 (457)
64 2o6q_A Variable lymphocyte rec 100.0 6.3E-27 2.2E-31 209.8 22.4 202 1-257 19-220 (270)
65 2z62_A TOLL-like receptor 4, v 100.0 1.3E-27 4.6E-32 214.9 17.4 208 1-257 31-239 (276)
66 1p9a_G Platelet glycoprotein I 99.9 1.2E-26 4.1E-31 209.9 20.9 206 18-282 6-211 (290)
67 3bz5_A Internalin-J, INLJ; leu 99.9 1.9E-26 6.5E-31 221.7 22.2 271 1-304 67-354 (457)
68 3rfs_A Internalin B, repeat mo 99.9 3E-27 1E-31 212.1 14.1 216 5-285 26-241 (272)
69 3rfs_A Internalin B, repeat mo 99.9 2.1E-26 7.3E-31 206.5 16.0 204 1-267 44-247 (272)
70 1jl5_A Outer protein YOPM; leu 99.9 2.7E-25 9.3E-30 213.5 24.2 115 22-151 131-245 (454)
71 1p9a_G Platelet glycoprotein I 99.9 1.2E-25 4.1E-30 203.4 19.8 196 1-255 13-208 (290)
72 2xwt_C Thyrotropin receptor; s 99.9 4.1E-26 1.4E-30 200.7 14.9 205 10-276 23-236 (239)
73 1jl5_A Outer protein YOPM; leu 99.9 3.8E-26 1.3E-30 219.4 14.8 261 1-303 14-291 (454)
74 3m19_A Variable lymphocyte rec 99.9 1.6E-25 5.6E-30 198.4 16.5 119 195-313 108-232 (251)
75 2ca6_A RAN GTPase-activating p 99.9 3.9E-27 1.3E-31 222.2 3.3 247 14-283 24-320 (386)
76 2xwt_C Thyrotropin receptor; s 99.9 3.9E-25 1.3E-29 194.4 14.8 194 1-252 34-236 (239)
77 3goz_A Leucine-rich repeat-con 99.9 6.9E-27 2.4E-31 218.5 3.5 136 2-137 2-156 (362)
78 3g06_A SSPH2 (leucine-rich rep 99.9 3.9E-24 1.3E-28 211.8 23.3 251 1-284 43-302 (622)
79 3m19_A Variable lymphocyte rec 99.9 3.1E-24 1.1E-28 190.1 19.7 179 24-257 16-194 (251)
80 4glp_A Monocyte differentiatio 99.9 2E-25 6.8E-30 204.1 12.0 224 22-302 64-307 (310)
81 4glp_A Monocyte differentiatio 99.9 1E-25 3.5E-30 206.0 10.1 225 2-280 68-308 (310)
82 1h6u_A Internalin H; cell adhe 99.9 1E-24 3.6E-29 199.0 16.1 207 5-281 26-232 (308)
83 3g06_A SSPH2 (leucine-rich rep 99.9 4.3E-24 1.5E-28 211.6 20.7 227 1-266 64-308 (622)
84 2ast_B S-phase kinase-associat 99.9 1.7E-25 5.9E-30 206.8 8.0 243 1-304 50-308 (336)
85 1h6u_A Internalin H; cell adhe 99.9 8.2E-24 2.8E-28 193.1 17.9 188 1-256 44-231 (308)
86 1z7x_W Ribonuclease inhibitor; 99.9 2.8E-27 9.4E-32 228.4 -6.0 152 1-153 59-237 (461)
87 3goz_A Leucine-rich repeat-con 99.9 1.4E-25 4.8E-30 209.6 5.1 236 1-283 25-301 (362)
88 2ca6_A RAN GTPase-activating p 99.9 3.5E-26 1.2E-30 215.7 0.8 243 37-305 23-319 (386)
89 4ay9_X Follicle-stimulating ho 99.9 1E-23 3.5E-28 196.0 17.2 240 2-299 13-256 (350)
90 2ast_B S-phase kinase-associat 99.9 2.6E-25 8.8E-30 205.7 5.6 229 1-285 73-312 (336)
91 2o6s_A Variable lymphocyte rec 99.9 2.4E-23 8E-28 179.0 14.7 128 2-133 11-138 (208)
92 1z7x_W Ribonuclease inhibitor; 99.9 5.6E-26 1.9E-30 219.2 -2.7 298 1-302 31-383 (461)
93 2o6s_A Variable lymphocyte rec 99.9 1.1E-22 3.9E-27 174.7 14.2 174 25-284 10-183 (208)
94 3cvr_A Invasion plasmid antige 99.9 1.4E-22 4.9E-27 198.3 15.5 182 23-284 60-248 (571)
95 3cvr_A Invasion plasmid antige 99.9 2.9E-22 9.9E-27 196.2 16.9 187 1-267 62-255 (571)
96 4ay9_X Follicle-stimulating ho 99.9 4.2E-22 1.4E-26 185.1 16.9 220 1-277 33-257 (350)
97 2v70_A SLIT-2, SLIT homolog 2 99.9 2.2E-22 7.4E-27 174.4 11.0 157 73-284 14-171 (220)
98 2xot_A Amphoterin-induced prot 99.9 2.1E-21 7.1E-26 181.2 15.3 179 1-231 21-202 (361)
99 2v9t_B SLIT homolog 2 protein 99.9 3.4E-21 1.2E-25 166.9 15.5 139 1-143 14-152 (220)
100 2v9t_B SLIT homolog 2 protein 99.9 1.2E-21 4.1E-26 169.7 12.0 155 73-282 14-168 (220)
101 1h6t_A Internalin B; cell adhe 99.9 1.3E-21 4.5E-26 176.9 12.3 172 43-280 43-214 (291)
102 1h6t_A Internalin B; cell adhe 99.9 9.6E-21 3.3E-25 171.2 16.0 185 5-257 31-215 (291)
103 2xot_A Amphoterin-induced prot 99.9 2.5E-21 8.6E-26 180.6 12.5 109 25-137 21-130 (361)
104 1m9s_A Internalin B; cell inva 99.9 2.8E-21 9.4E-26 191.2 13.0 187 26-280 25-211 (605)
105 2v70_A SLIT-2, SLIT homolog 2 99.9 1.4E-20 4.7E-25 163.0 15.8 141 1-145 14-155 (220)
106 3e6j_A Variable lymphocyte rec 99.8 1.4E-20 4.9E-25 164.0 15.2 157 72-284 21-177 (229)
107 1m9s_A Internalin B; cell inva 99.8 2.3E-20 7.9E-25 184.6 16.1 189 4-260 27-215 (605)
108 3e6j_A Variable lymphocyte rec 99.8 5.5E-20 1.9E-24 160.3 16.1 138 1-143 22-159 (229)
109 1dce_A Protein (RAB geranylger 99.8 1E-22 3.5E-27 200.2 -4.4 179 43-285 346-552 (567)
110 1dce_A Protein (RAB geranylger 99.8 2.1E-21 7E-26 190.9 0.9 197 19-273 346-567 (567)
111 1xeu_A Internalin C; cellular 99.8 6.2E-20 2.1E-24 163.3 10.3 80 196-281 108-187 (263)
112 1xeu_A Internalin C; cellular 99.8 2.1E-20 7.1E-25 166.5 6.5 171 20-257 17-187 (263)
113 4ezg_A Putative uncharacterize 99.8 1.3E-19 4.4E-24 154.2 10.9 154 67-280 41-195 (197)
114 4b8c_D Glucose-repressible alc 99.8 1E-20 3.5E-25 191.5 4.4 182 37-280 215-405 (727)
115 4ezg_A Putative uncharacterize 99.8 2.1E-19 7.1E-24 152.9 11.7 155 42-256 40-195 (197)
116 1w8a_A SLIT protein; signaling 99.8 2.3E-19 8E-24 151.9 11.2 89 195-283 55-143 (192)
117 1w8a_A SLIT protein; signaling 99.8 7.9E-19 2.7E-23 148.6 12.8 132 1-136 11-143 (192)
118 4b8c_D Glucose-repressible alc 99.8 2.8E-20 9.5E-25 188.3 4.5 125 13-142 215-339 (727)
119 3ogk_B Coronatine-insensitive 99.8 7.2E-21 2.5E-25 189.2 -0.5 125 1-127 167-326 (592)
120 2ell_A Acidic leucine-rich nuc 99.8 2.1E-18 7.2E-23 142.7 10.5 129 1-133 27-161 (168)
121 2je0_A Acidic leucine-rich nuc 99.7 3.5E-18 1.2E-22 138.5 9.3 124 22-148 17-145 (149)
122 2wfh_A SLIT homolog 2 protein 99.7 1.2E-17 4E-22 141.4 12.8 128 1-133 13-140 (193)
123 2o6r_A Variable lymphocyte rec 99.7 1.8E-17 6.1E-22 138.4 13.5 132 1-136 10-141 (177)
124 3ogk_B Coronatine-insensitive 99.7 1.3E-19 4.3E-24 180.3 -1.0 261 1-281 246-528 (592)
125 2ell_A Acidic leucine-rich nuc 99.7 2.3E-17 8E-22 136.4 12.1 135 94-281 23-162 (168)
126 3sb4_A Hypothetical leucine ri 99.7 1.6E-17 5.3E-22 152.9 10.1 87 193-281 225-312 (329)
127 2wfh_A SLIT homolog 2 protein 99.7 3.6E-17 1.2E-21 138.4 11.0 89 195-283 55-143 (193)
128 2je0_A Acidic leucine-rich nuc 99.7 3E-17 1E-21 132.9 10.0 129 94-275 16-149 (149)
129 2p1m_B Transport inhibitor res 99.7 6.4E-19 2.2E-23 175.2 -1.3 204 93-301 287-518 (594)
130 2o6r_A Variable lymphocyte rec 99.7 1.8E-16 6.2E-21 132.2 13.4 89 196-284 54-142 (177)
131 3sb4_A Hypothetical leucine ri 99.7 3.8E-16 1.3E-20 143.7 13.3 108 193-303 201-311 (329)
132 1a9n_A U2A', U2A'; complex (nu 99.6 3.1E-16 1.1E-20 130.7 8.7 109 18-132 15-126 (176)
133 2p1m_B Transport inhibitor res 99.6 3E-18 1E-22 170.4 -5.7 87 20-106 103-195 (594)
134 3g39_A Variable lymphocyte rec 99.6 1.9E-15 6.6E-20 125.0 11.4 108 24-135 11-118 (170)
135 1a9n_A U2A', U2A'; complex (nu 99.6 1.2E-15 4E-20 127.1 8.8 81 197-279 67-153 (176)
136 2r9u_A Variable lymphocyte rec 99.6 3.5E-15 1.2E-19 123.9 11.3 106 25-134 15-120 (174)
137 1ds9_A Outer arm dynein; leuci 99.6 1.3E-17 4.3E-22 141.9 -4.5 79 197-279 96-185 (198)
138 1ds9_A Outer arm dynein; leuci 99.6 3.9E-18 1.3E-22 145.1 -8.0 142 2-149 22-180 (198)
139 4fdw_A Leucine rich hypothetic 99.6 3.6E-14 1.2E-18 133.5 18.0 138 2-148 139-276 (401)
140 4fdw_A Leucine rich hypothetic 99.6 7.1E-14 2.4E-18 131.5 19.4 231 9-279 123-358 (401)
141 3g39_A Variable lymphocyte rec 99.6 7.7E-15 2.7E-19 121.3 11.3 106 1-110 12-117 (170)
142 2r9u_A Variable lymphocyte rec 99.6 1.4E-14 4.8E-19 120.2 11.4 106 1-110 15-120 (174)
143 3un9_A NLR family member X1; l 99.5 5.8E-16 2E-20 144.4 -3.7 166 69-280 71-253 (372)
144 2ifg_A High affinity nerve gro 99.5 1.5E-13 5E-18 127.2 9.8 103 2-108 12-116 (347)
145 3un9_A NLR family member X1; l 99.4 4.5E-15 1.5E-19 138.3 -4.7 188 45-279 71-283 (372)
146 2ifg_A High affinity nerve gro 99.3 2.8E-12 9.5E-17 118.6 10.5 106 25-134 11-118 (347)
147 2ra8_A Uncharacterized protein 99.2 9.8E-12 3.3E-16 114.9 3.0 83 193-277 251-341 (362)
148 4fs7_A Uncharacterized protein 99.0 7.1E-09 2.4E-13 97.4 16.5 84 190-276 293-376 (394)
149 4fs7_A Uncharacterized protein 99.0 6.1E-09 2.1E-13 97.8 15.6 69 10-80 59-127 (394)
150 2ra8_A Uncharacterized protein 99.0 1.6E-10 5.3E-15 106.9 4.3 185 16-253 133-341 (362)
151 4gt6_A Cell surface protein; l 98.9 5.6E-08 1.9E-12 91.2 18.9 84 191-277 285-368 (394)
152 3rw6_A Nuclear RNA export fact 98.8 1.7E-09 6E-14 94.9 2.0 64 21-86 169-236 (267)
153 4gt6_A Cell surface protein; l 98.7 2.6E-07 8.8E-12 86.7 15.6 132 113-278 259-390 (394)
154 1io0_A Tropomodulin; LRR prote 98.7 4.1E-09 1.4E-13 87.9 1.3 115 17-132 31-164 (185)
155 1io0_A Tropomodulin; LRR prote 98.6 5.8E-09 2E-13 87.0 1.3 87 193-279 64-164 (185)
156 3rw6_A Nuclear RNA export fact 98.6 4.7E-08 1.6E-12 85.8 6.3 67 215-283 167-237 (267)
157 4h09_A Hypothetical leucine ri 98.5 4E-06 1.4E-10 78.0 16.6 81 192-274 261-341 (379)
158 4h09_A Hypothetical leucine ri 98.2 2.9E-05 1E-09 72.1 15.5 217 15-267 129-357 (379)
159 3e4g_A ATP synthase subunit S, 98.1 4.9E-07 1.7E-11 73.7 0.6 83 195-277 62-150 (176)
160 3e4g_A ATP synthase subunit S, 98.1 1.5E-06 5E-11 70.9 3.0 85 46-130 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 2E-05 6.8E-10 65.4 1.9 113 19-131 38-169 (197)
162 3rfe_A Platelet glycoprotein I 97.4 0.00038 1.3E-08 53.8 6.5 57 25-83 11-68 (130)
163 3rfe_A Platelet glycoprotein I 97.3 0.00052 1.8E-08 53.0 7.1 58 222-281 12-70 (130)
164 1pgv_A TMD-1, tropomodulin TMD 97.3 9.8E-05 3.3E-09 61.3 2.7 107 1-108 44-170 (197)
165 2k1k_A Ephrin type-A receptor 86.8 0.59 2E-05 26.9 2.8 24 337-360 11-34 (38)
166 2ks1_B Epidermal growth factor 83.4 0.81 2.8E-05 27.2 2.4 27 338-364 13-39 (44)
167 2l2t_A Receptor tyrosine-prote 80.6 1.1 3.7E-05 26.6 2.2 25 339-363 13-37 (44)
168 2jwa_A Receptor tyrosine-prote 76.4 2 6.8E-05 25.4 2.5 25 339-363 14-38 (44)
169 2lz0_A Uncharacterized protein 61.9 10 0.00035 27.0 4.3 37 40-77 14-50 (100)
170 2lz0_A Uncharacterized protein 56.3 32 0.0011 24.4 6.1 48 8-56 6-53 (100)
171 2l9u_A Receptor tyrosine-prote 48.7 16 0.00056 20.0 2.5 20 340-359 10-29 (40)
172 2klu_A T-cell surface glycopro 48.5 15 0.0005 23.7 2.7 12 342-353 12-23 (70)
173 2l34_A TYRO protein tyrosine k 44.1 26 0.00088 19.2 3.0 22 338-359 8-29 (33)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.3e-43 Score=360.00 Aligned_cols=311 Identities=33% Similarity=0.476 Sum_probs=235.8
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++|++++|.+++.+|..+.++++|+.|++++|++++.+|..|+++++|++|++++|.+++.+|..+..+++|++|++++|
T Consensus 397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476 (768)
T ss_dssp CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence 35666777776667777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCcccc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYW 160 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 160 (395)
++++.+|..+. .+++|++|++++|++++.+|.+++.+++|++|++++|.+++.+|..+..+++|+.++...........
T Consensus 477 ~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 477 DLTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp CCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred cccCcCCHHHh-cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 77766776665 47777777777777777777777777777777777777777777777777777766654433321110
Q ss_pred cc--CCccccCC---C--------------------------------------CccccceEEEeeccccccccccCccc
Q 043041 161 FA--GGLQLTTA---G--------------------------------------DFFSGQAVLTWKGSQYQYQNTLGLVK 197 (395)
Q Consensus 161 ~~--~~~~~~~~---~--------------------------------------~~~~~~~~~~~~~~~~~~~~~l~~L~ 197 (395)
.. ........ . ..........+.|..+..+..++.|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~ 635 (768)
T 3rgz_A 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635 (768)
T ss_dssp GGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred hHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc
Confidence 00 00000000 0 00000001234555666778889999
Q ss_pred EEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCc
Q 043041 198 MLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNN 277 (395)
Q Consensus 198 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 277 (395)
.||+++|+++|.+|..++.++.|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..+..+++|++||+++|+
T Consensus 636 ~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp EEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred EEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCcccCccccccccCC-CCCCCCCCCCCCCC
Q 043041 278 LSGKIPSGTQLQSFNASTYAGN-ELCGLPLPNKCPDG 313 (395)
Q Consensus 278 l~~~~p~~~~l~~l~~~~~~gN-~lc~~~~~~~c~~~ 313 (395)
++|.||...++.++...+|.|| .|||.|.. .|...
T Consensus 716 l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~ 751 (768)
T 3rgz_A 716 LSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPS 751 (768)
T ss_dssp EEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSC
T ss_pred ccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCC
Confidence 9999999999999999999999 99999987 88644
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.3e-40 Score=302.66 Aligned_cols=254 Identities=34% Similarity=0.587 Sum_probs=226.5
Q ss_pred EEEccCCcccc--cCCCCccCCCCCCEEECCC-CcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECC
Q 043041 2 YLDLSNNLLSG--RLPDCWPLFDRLRILDLAN-NNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLG 78 (395)
Q Consensus 2 ~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls 78 (395)
+|+|++|.+++ .+|..+.++++|++|++++ |.+.+.+|..|+++++|++|+|++|.+++.+|..+.++++|++|+++
T Consensus 54 ~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 133 (313)
T 1ogq_A 54 NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133 (313)
T ss_dssp EEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECC
T ss_pred EEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCC
Confidence 68888999988 8888888999999999984 88888888888889999999999999988888888889999999999
Q ss_pred CCcccccCchhHhhcCCCccEEEccceeeccccCccCCCCC-CccEEEcccCCCCCCCCccccccccchhccccccccCc
Q 043041 79 RNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLP-FIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTS 157 (395)
Q Consensus 79 ~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~ 157 (395)
+|.+++.+|..+. .+++|++|++++|++++.+|..+..++ +|++|++++|.+++..|..+..+
T Consensus 134 ~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l--------------- 197 (313)
T 1ogq_A 134 YNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--------------- 197 (313)
T ss_dssp SSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC---------------
T ss_pred CCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC---------------
Confidence 9998888888776 588999999999998888888888887 88999999998887777665443
Q ss_pred cccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcc
Q 043041 158 EYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPK 237 (395)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 237 (395)
+ |+.|++++|.+++.+|..+..+++|+.|+|++|.+++.+|.
T Consensus 198 ------------------------------------~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~- 239 (313)
T 1ogq_A 198 ------------------------------------N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK- 239 (313)
T ss_dssp ------------------------------------C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-
T ss_pred ------------------------------------c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-
Confidence 2 59999999999999999999999999999999999977666
Q ss_pred cCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCCcccCccccccccCC-CCCCCCCCCCC
Q 043041 238 IGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSGTQLQSFNASTYAGN-ELCGLPLPNKC 310 (395)
Q Consensus 238 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~l~~l~~~~~~gN-~lc~~~~~~~c 310 (395)
+..+++|++|++++|++++.+|..+..+++|+.|++++|+++|.+|....++++..+++.+| .+||.|.. .|
T Consensus 240 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 88999999999999999999999999999999999999999999999989999999999999 79998775 46
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.9e-38 Score=321.13 Aligned_cols=294 Identities=34% Similarity=0.484 Sum_probs=190.3
Q ss_pred EEEccCCcccccCCCCccCCC-CCCEEECCCCcccccCCCCCCC--CCCccEEecccccCcccCchhccCCCCCCEEECC
Q 043041 2 YLDLSNNLLSGRLPDCWPLFD-RLRILDLANNNFSGKIPDSMGS--LPNIQILSLHNNSLTGELPSSLQNCSLLILMDLG 78 (395)
Q Consensus 2 ~L~Ls~n~l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~--l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls 78 (395)
+|++++|.+++.+|..+.+++ +|+.|++++|++++.+|..+.. +++|++|++++|.+++.+|..+.++++|++|+++
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 426 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECC
T ss_pred EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECc
Confidence 556666666656666555554 5555555555555555555544 4555555555555555555555555555555555
Q ss_pred CCcccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCcc
Q 043041 79 RNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSE 158 (395)
Q Consensus 79 ~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~ 158 (395)
+|.+++.+|..+. .+++|++|++++|++.+.+|..+..+++|++|++++|.+++..|..+..+++|+.+..........
T Consensus 427 ~N~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 505 (768)
T 3rgz_A 427 FNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505 (768)
T ss_dssp SSEEESCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred CCcccCcccHHHh-cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCc
Confidence 5555555555444 355555555555555555555555555555555555555555555555555555544333322211
Q ss_pred ccccCCccccCCCCccccceEEE-----eeccccccccccCcccEEECcCCCCccCCChhh-------------------
Q 043041 159 YWFAGGLQLTTAGDFFSGQAVLT-----WKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEI------------------- 214 (395)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~------------------- 214 (395)
.... -........+. +.+..+..+..+++|+.|++++|.++|.+|..+
T Consensus 506 ~p~~--------~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~ 577 (768)
T 3rgz_A 506 IPKW--------IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 577 (768)
T ss_dssp CCGG--------GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEE
T ss_pred CChH--------HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccc
Confidence 1000 00000011111 133445556677777777777777776666543
Q ss_pred ---------------------------------------------------hcCcCCCEEeCCCCcCcccCCcccCCCCC
Q 043041 215 ---------------------------------------------------MDLVGLIAMNLSRNNLTGQITPKIGQLKS 243 (395)
Q Consensus 215 ---------------------------------------------------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 243 (395)
..+++|+.|+|++|+++|.+|..++.++.
T Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~ 657 (768)
T 3rgz_A 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657 (768)
T ss_dssp EECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTT
T ss_pred cccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcccc
Confidence 34578999999999999999999999999
Q ss_pred CCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCC-cccCccccccccCCCCCCC
Q 043041 244 LDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSG-TQLQSFNASTYAGNELCGL 304 (395)
Q Consensus 244 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~l~~l~~~~~~gN~lc~~ 304 (395)
|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|.. ..+..+..+++++|.+.|.
T Consensus 658 L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred CCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccccc
Confidence 999999999999999999999999999999999999999976 6788899999999988764
No 4
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.3e-35 Score=282.10 Aligned_cols=299 Identities=20% Similarity=0.199 Sum_probs=212.9
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccC-CCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKI-PDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGR 79 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~ 79 (395)
++|||++|.+++..|..|.++++|++|+|++|.+.+.+ +..|.++++|++|+|++|.+++..|..|.++++|++|++++
T Consensus 33 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 112 (455)
T 3v47_A 33 NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQ 112 (455)
T ss_dssp CEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTT
T ss_pred CEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCC
Confidence 57999999999888999999999999999999997555 67899999999999999999988899999999999999999
Q ss_pred CcccccCchh-HhhcCCCccEEEccceeeccccCcc-CCCCCCccEEEcccCCCCCCCCcccccc--ccchhcccccccc
Q 043041 80 NALSGEIPKW-IGESLPKLIVLSLMSNKFHGIIPFQ-LCYLPFIQILDLSSNNIPGIIPKCFNNF--TAMAQEKSSVLSV 155 (395)
Q Consensus 80 n~l~~~ip~~-~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~l~~~~~~~ 155 (395)
|.+++.+|.. .+..+++|++|++++|++++..|.. +..+++|++|++++|.+.+..+..+..+ ..++.+.......
T Consensus 113 n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l 192 (455)
T 3v47_A 113 CNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITL 192 (455)
T ss_dssp SCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBC
T ss_pred CCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcc
Confidence 9998655544 2346999999999999999887876 8899999999999999999888877665 2333332221111
Q ss_pred Ccccccc--------------------CCccc-------------------------------------cCC-CC-----
Q 043041 156 TSEYWFA--------------------GGLQL-------------------------------------TTA-GD----- 172 (395)
Q Consensus 156 ~~~~~~~--------------------~~~~~-------------------------------------~~~-~~----- 172 (395)
....... ..+.+ ... ..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (455)
T 3v47_A 193 QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL 272 (455)
T ss_dssp TTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGG
T ss_pred cccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccc
Confidence 1100000 00000 000 00
Q ss_pred ccccceEEEee-----ccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEE
Q 043041 173 FFSGQAVLTWK-----GSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFL 247 (395)
Q Consensus 173 ~~~~~~~~~~~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 247 (395)
.......+.+. +..+..+..+++|+.|++++|++++..|..+..+++|+.|+|++|.+++..|..++.+++|+.|
T Consensus 273 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 352 (455)
T 3v47_A 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVL 352 (455)
T ss_dssp TTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEE
T ss_pred cccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEE
Confidence 00111122221 1223445566777777777777776667777777777777777777776667777777777777
Q ss_pred ECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCC-cccCccccccccCC
Q 043041 248 DLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSG-TQLQSFNASTYAGN 299 (395)
Q Consensus 248 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~l~~l~~~~~~gN 299 (395)
+|++|++++..|..+..+++|++|++++|++++..+.. ..+++++.+++.+|
T Consensus 353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence 77777777666777777777777777777777644433 45666777777777
No 5
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.7e-34 Score=275.62 Aligned_cols=290 Identities=19% Similarity=0.146 Sum_probs=199.5
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++|||++|++++..|..|.++++|++|+|++|.+++..|.+|+++++|++|+|++|.+++..+..|.++++|++|++++|
T Consensus 35 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 114 (477)
T 2id5_A 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114 (477)
T ss_dssp SEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTS
T ss_pred cEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCC
Confidence 47999999999888889999999999999999999888999999999999999999999766677899999999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCcccc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYW 160 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 160 (395)
.+.+..|..+ ..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.+............
T Consensus 115 ~i~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~ 193 (477)
T 2id5_A 115 KIVILLDYMF-QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD 193 (477)
T ss_dssp CCCEECTTTT-TTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT
T ss_pred ccccCChhHc-cccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh
Confidence 9984445444 469999999999999998888899999999999999999998877788888888887755433322110
Q ss_pred ccCCccccCCCCccccceEEEeec-----cccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCC
Q 043041 161 FAGGLQLTTAGDFFSGQAVLTWKG-----SQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQIT 235 (395)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 235 (395)
.. + ........+.+.+ ..+.......+|+.|++++|++++..+..+..+++|+.|+|++|.+++..+
T Consensus 194 ~~----~----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 265 (477)
T 2id5_A 194 YS----F----KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG 265 (477)
T ss_dssp TC----S----CSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECT
T ss_pred hh----c----ccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccCh
Confidence 00 0 0001111111111 111111122356666666666663333455566666666666666665555
Q ss_pred cccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCC-cccCccccccccCC
Q 043041 236 PKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSG-TQLQSFNASTYAGN 299 (395)
Q Consensus 236 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~l~~l~~~~~~gN 299 (395)
..|..+++|+.|+|++|++++..|..+..+++|+.|++++|++++..+.. ..+.++..+++.+|
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 266 SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp TSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred hhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence 55666666666666666666555556666666666666666665443322 33445555555555
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1e-34 Score=266.07 Aligned_cols=226 Identities=26% Similarity=0.398 Sum_probs=208.3
Q ss_pred CEEEccC-CcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCC
Q 043041 1 MYLDLSN-NLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGR 79 (395)
Q Consensus 1 ~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~ 79 (395)
++|+|++ |.+.+.+|..|.++++|++|+|++|++++.+|..|+++++|++|+|++|.+++.+|..+..+++|++|++++
T Consensus 79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 158 (313)
T 1ogq_A 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcC
Confidence 5799995 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCchhHhhcCC-CccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCcc
Q 043041 80 NALSGEIPKWIGESLP-KLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSE 158 (395)
Q Consensus 80 n~l~~~ip~~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~ 158 (395)
|++++.+|..++ .++ +|++|++++|++++.+|..+..++ |++|++++|.+++..|..+..
T Consensus 159 N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~----------------- 219 (313)
T 1ogq_A 159 NRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS----------------- 219 (313)
T ss_dssp SCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCT-----------------
T ss_pred CcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhc-----------------
Confidence 999999999988 477 999999999999999999999998 999999999998877766654
Q ss_pred ccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCccc
Q 043041 159 YWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKI 238 (395)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 238 (395)
+++|+.|++++|.+++.+|. +..+++|++|+|++|.+++.+|..+
T Consensus 220 ----------------------------------l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l 264 (313)
T 1ogq_A 220 ----------------------------------DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp ----------------------------------TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGG
T ss_pred ----------------------------------CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHH
Confidence 44569999999999976665 8889999999999999999999999
Q ss_pred CCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCccc
Q 043041 239 GQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGK 281 (395)
Q Consensus 239 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 281 (395)
..+++|+.|+|++|++++.+|.. ..+++|+.+++++|+.-+.
T Consensus 265 ~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 265 TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 99999999999999999999986 8899999999999984433
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.4e-34 Score=276.20 Aligned_cols=296 Identities=19% Similarity=0.144 Sum_probs=241.6
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|.+++..|..|.++++|++|++++|
T Consensus 59 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n 138 (477)
T 2id5_A 59 EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT
T ss_pred CEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC
Confidence 57999999999988999999999999999999999777778999999999999999999888999999999999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCcccc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYW 160 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 160 (395)
.+.+..|..+ ..+++|++|++++|++++..+..+..+++|+.|++++|.+.+..+..|..+++|+.+............
T Consensus 139 ~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 217 (477)
T 2id5_A 139 DLVYISHRAF-SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217 (477)
T ss_dssp TCCEECTTSS-TTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC
T ss_pred ccceeChhhc-cCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC
Confidence 9984444444 479999999999999998777789999999999999999999888899999999888765433222111
Q ss_pred ccCCccccCCCCccccceEEEeec-----cccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCC
Q 043041 161 FAGGLQLTTAGDFFSGQAVLTWKG-----SQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQIT 235 (395)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 235 (395)
.. .........+.+.+ .....+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|++++..|
T Consensus 218 ~~--------~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 289 (477)
T 2id5_A 218 PN--------CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP 289 (477)
T ss_dssp TT--------TTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT
T ss_pred cc--------cccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH
Confidence 00 00001122222222 122346778999999999999998888889999999999999999999999
Q ss_pred cccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCCcccCccccccccCC-CCCCCC
Q 043041 236 PKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSGTQLQSFNASTYAGN-ELCGLP 305 (395)
Q Consensus 236 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~l~~l~~~~~~gN-~lc~~~ 305 (395)
..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.+..+..+.+.......+.++ ..|..|
T Consensus 290 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 290 YAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp TTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred HHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence 9999999999999999999987778889999999999999999987654433333344455566 556443
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.6e-33 Score=269.24 Aligned_cols=287 Identities=22% Similarity=0.177 Sum_probs=217.2
Q ss_pred CEEEccCCcccccC-CCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchh--ccCCCCCCEEEC
Q 043041 1 MYLDLSNNLLSGRL-PDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSS--LQNCSLLILMDL 77 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~l 77 (395)
++|+|++|.+.+.+ |..|.++++|++|+|++|++++..|..|+++++|++|+|++|.+++..+.. +..+++|++|++
T Consensus 57 ~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L 136 (455)
T 3v47_A 57 QFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136 (455)
T ss_dssp CEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEEC
T ss_pred cEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEEC
Confidence 57999999997555 667999999999999999999888999999999999999999999755555 899999999999
Q ss_pred CCCcccccCchhHhhcCCCccEEEccceeeccccCccCCCC----------------------------------CCccE
Q 043041 78 GRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYL----------------------------------PFIQI 123 (395)
Q Consensus 78 s~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l----------------------------------~~L~~ 123 (395)
++|.+++..|..++..+++|++|++++|++.+..+..+..+ ++|++
T Consensus 137 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~ 216 (455)
T 3v47_A 137 RDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITT 216 (455)
T ss_dssp CSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEE
T ss_pred CCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeee
Confidence 99999966677655579999999999999998877766544 56777
Q ss_pred EEcccCCCCCCCCcccccc---ccchhcccccc-------------------------ccCccccccCCccccC----CC
Q 043041 124 LDLSSNNIPGIIPKCFNNF---TAMAQEKSSVL-------------------------SVTSEYWFAGGLQLTT----AG 171 (395)
Q Consensus 124 L~l~~n~l~~~~~~~~~~l---~~L~~l~~~~~-------------------------~~~~~~~~~~~~~~~~----~~ 171 (395)
|++++|.+.+..|..+... .+++.+..... ......... .+.+.. .-
T Consensus 217 L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~-~n~l~~~~~~~~ 295 (455)
T 3v47_A 217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLS-KSKIFALLKSVF 295 (455)
T ss_dssp EECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECC-SSCCCEECTTTT
T ss_pred EecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEec-Cccccccchhhc
Confidence 7777776665544433222 22222211100 000000010 111110 00
Q ss_pred CccccceEEEee-----ccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCE
Q 043041 172 DFFSGQAVLTWK-----GSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDF 246 (395)
Q Consensus 172 ~~~~~~~~~~~~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 246 (395)
........+.+. +..+..+..+++|+.|++++|.+++..|..+..+++|+.|+|++|++++..|..+..+++|++
T Consensus 296 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 375 (455)
T 3v47_A 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE 375 (455)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccE
Confidence 111222233322 223445678899999999999999888999999999999999999999888999999999999
Q ss_pred EECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCCccc
Q 043041 247 LDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSGTQL 288 (395)
Q Consensus 247 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~l 288 (395)
|+|++|++++..+..+..+++|+.|++++|+++|.+|....+
T Consensus 376 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l 417 (455)
T 3v47_A 376 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 417 (455)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred EECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence 999999999877778899999999999999999999975443
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.4e-32 Score=274.61 Aligned_cols=290 Identities=21% Similarity=0.206 Sum_probs=224.7
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++|++++|.+++..+..|..+++|+.|++++|+++ .+|..++++++|++|++++|.+++..|..+.++++|++|++++|
T Consensus 257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 335 (606)
T 3t6q_A 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335 (606)
T ss_dssp EEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSC
T ss_pred eEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCC
Confidence 36899999999888888999999999999999998 78889999999999999999999888889999999999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeecccc--CccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCcc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGII--PFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSE 158 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~ 158 (395)
.+.+.+|...+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..|..+..+++|+.+..........
T Consensus 336 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 415 (606)
T 3t6q_A 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415 (606)
T ss_dssp SSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC
T ss_pred CcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCc
Confidence 9988888876667999999999999998776 78899999999999999999999999999999998887654433221
Q ss_pred ccccCCccccCCCCccccceEEEe-----eccccccccccCcccEEECcCCCCccC---CChhhhcCcCCCEEeCCCCcC
Q 043041 159 YWFAGGLQLTTAGDFFSGQAVLTW-----KGSQYQYQNTLGLVKMLDLSSNKLGGE---VPEEIMDLVGLIAMNLSRNNL 230 (395)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~p~~~~~l~~L~~L~Ls~N~l 230 (395)
..... -........+.+ .+..+..+..+++|+.|++++|.+++. .+..+..+++|+.|++++|.+
T Consensus 416 ~~~~~-------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l 488 (606)
T 3t6q_A 416 DAQSP-------FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488 (606)
T ss_dssp TTCCT-------TTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC
T ss_pred ccchh-------hhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc
Confidence 10000 000111111221 222344456677777777777777652 235577777777788877777
Q ss_pred cccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCC-cccCccccccccCC
Q 043041 231 TGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSG-TQLQSFNASTYAGN 299 (395)
Q Consensus 231 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~l~~l~~~~~~gN 299 (395)
++..|..|+.+++|+.|+|++|++++..|..+..++.| .|++++|++++.+|.. ..+.+++.+++.+|
T Consensus 489 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTC
T ss_pred CccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCC
Confidence 77777777777778888888887777777777777777 7778888777666653 45666677777777
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.4e-33 Score=286.68 Aligned_cols=284 Identities=22% Similarity=0.200 Sum_probs=183.5
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++|+|++|.+++..|..|..+++|+.|+|++|++++..|..|.++++|++|+|++|.+++..|..|.++++|++|++++|
T Consensus 269 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 348 (844)
T 3j0a_A 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348 (844)
T ss_dssp CEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSC
T ss_pred cEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCC
Confidence 35677777777666677777777777777777777666677777777777777777777666667777777777777777
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCcccc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYW 160 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 160 (395)
.+. .++...+..+++|++|++++|.+++. ..+++|+.|++++|+++.. |.... .++.++...........
T Consensus 349 ~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l-~~~~~---~l~~L~ls~N~l~~l~~ 418 (844)
T 3j0a_A 349 HIA-IIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTL-PKINL---TANLIHLSENRLENLDI 418 (844)
T ss_dssp CCC-CCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCC-CCCCT---TCCEEECCSCCCCSSTT
T ss_pred CCC-ccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcccc-ccccc---ccceeecccCccccCch
Confidence 776 55544444577777777777776632 2256666666666666532 22211 12211111111100000
Q ss_pred ccCCccccCCCCccccceEEEeeccc------cccccccCcccEEECcCCCCc-----cCCChhhhcCcCCCEEeCCCCc
Q 043041 161 FAGGLQLTTAGDFFSGQAVLTWKGSQ------YQYQNTLGLVKMLDLSSNKLG-----GEVPEEIMDLVGLIAMNLSRNN 229 (395)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~L~~L~Ls~n~l~-----~~~p~~~~~l~~L~~L~Ls~N~ 229 (395)
.. ..........+.+.+.. ......+++|+.|++++|.++ +..+..+..+++|+.|+|++|.
T Consensus 419 ~~-------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 491 (844)
T 3j0a_A 419 LY-------FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY 491 (844)
T ss_dssp HH-------HHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHH
T ss_pred hh-------hhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCc
Confidence 00 00001111222222211 112334678888888888886 3445667888999999999999
Q ss_pred CcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCCcccCccccccccCC-CCCCCC
Q 043041 230 LTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSGTQLQSFNASTYAGN-ELCGLP 305 (395)
Q Consensus 230 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~l~~l~~~~~~gN-~lc~~~ 305 (395)
+++..|..|..+++|+.|+|++|++++..|..+. ++|+.|++++|++++.+|.. +..+..+++.+| ..|.++
T Consensus 492 l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 492 LNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECE 564 (844)
T ss_dssp HTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSS
T ss_pred ccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccc
Confidence 9988888899999999999999999876666655 78999999999999888853 667888888888 667543
No 11
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.3e-32 Score=258.34 Aligned_cols=291 Identities=19% Similarity=0.177 Sum_probs=191.3
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++|++++|.++...+..|..+++|++|+|++|.+++..+.+|+.+++|++|+|++|.+++..|..|.++++|++|++++|
T Consensus 48 ~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 127 (390)
T 3o6n_A 48 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127 (390)
T ss_dssp SEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC
Confidence 47899999998544445789999999999999999888889999999999999999999888888999999999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCcccc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYW 160 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 160 (395)
.++ .+|..++..+++|++|++++|++++..|..+..+++|++|++++|.+++... ..+++|+.+............
T Consensus 128 ~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~L~~L~l~~n~l~~~~~ 203 (390)
T 3o6n_A 128 DLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL---SLIPSLFHANVSYNLLSTLAI 203 (390)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCG---GGCTTCSEEECCSSCCSEEEC
T ss_pred ccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcccc---ccccccceeecccccccccCC
Confidence 999 8998876679999999999999998888889999999999999999987643 344445444432221111000
Q ss_pred cc-------CCccccCCC-CccccceEEEeecc---ccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCc
Q 043041 161 FA-------GGLQLTTAG-DFFSGQAVLTWKGS---QYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNN 229 (395)
Q Consensus 161 ~~-------~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 229 (395)
.. ..+.+...+ ........+.+.+. ....+..+++|+.|++++|.+++..|..+..+++|+.|+|++|+
T Consensus 204 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (390)
T 3o6n_A 204 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283 (390)
T ss_dssp CSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC
T ss_pred CCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc
Confidence 00 000000000 00001111111110 11234455556666666666655555556666666666666666
Q ss_pred CcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCCcccCccccccccCC
Q 043041 230 LTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSGTQLQSFNASTYAGN 299 (395)
Q Consensus 230 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~l~~l~~~~~~gN 299 (395)
++ .+|..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|+++.. | ...+.+++.+++.+|
T Consensus 284 l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~-~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 284 LV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHN 349 (390)
T ss_dssp CC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSS
T ss_pred Cc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C-chhhccCCEEEcCCC
Confidence 65 24444455566666666666655 3444455556666666666665533 2 234455555555555
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.7e-32 Score=273.37 Aligned_cols=297 Identities=20% Similarity=0.230 Sum_probs=220.2
Q ss_pred CEEEccCCccccc-----------------CCCCcc--CCCCCCEEECCCCcccccCCCCCCCCCCccEEeccccc-Ccc
Q 043041 1 MYLDLSNNLLSGR-----------------LPDCWP--LFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNS-LTG 60 (395)
Q Consensus 1 ~~L~Ls~n~l~~~-----------------~p~~~~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~ 60 (395)
++|||++|.+++. +|+.+. ++++|++|+|++|++.+.+|..|+++++|++|++++|+ +++
T Consensus 209 ~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~ 288 (636)
T 4eco_A 209 RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG 288 (636)
T ss_dssp CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCH
T ss_pred CEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcc
Confidence 5799999999986 999999 99999999999999999999999999999999999998 998
Q ss_pred -cCchhccCC------CCCCEEECCCCcccccCch--hHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCC
Q 043041 61 -ELPSSLQNC------SLLILMDLGRNALSGEIPK--WIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNI 131 (395)
Q Consensus 61 -~~p~~~~~l------~~L~~L~ls~n~l~~~ip~--~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l 131 (395)
.+|..+..+ ++|++|++++|.++ .+|. .+. .+++|++|++++|+++|.+| .+..+++|++|++++|.+
T Consensus 289 ~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~-~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l 365 (636)
T 4eco_A 289 EQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ-KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQI 365 (636)
T ss_dssp HHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT-TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEE
T ss_pred ccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc-cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcc
Confidence 889888876 99999999999999 9998 666 69999999999999998888 888899999999999999
Q ss_pred CCCCCcccccccc-chhccccccccCccccccC-------------CccccCC-CC----------ccccceEEEeecc-
Q 043041 132 PGIIPKCFNNFTA-MAQEKSSVLSVTSEYWFAG-------------GLQLTTA-GD----------FFSGQAVLTWKGS- 185 (395)
Q Consensus 132 ~~~~~~~~~~l~~-L~~l~~~~~~~~~~~~~~~-------------~~~~~~~-~~----------~~~~~~~~~~~~~- 185 (395)
+ .+|..+..+++ |+.+............... .+.+... +. .......+.+.+.
T Consensus 366 ~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~ 444 (636)
T 4eco_A 366 T-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444 (636)
T ss_dssp E-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC
T ss_pred c-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc
Confidence 8 67778888888 8887765444331111000 0111110 00 0111222222221
Q ss_pred ---cc-ccccccCcccEEECcCCCCccCCChhh-hcC-------cCCCEEeCCCCcCcccCCcccC--CCCCCCEEECcC
Q 043041 186 ---QY-QYQNTLGLVKMLDLSSNKLGGEVPEEI-MDL-------VGLIAMNLSRNNLTGQITPKIG--QLKSLDFLDLSR 251 (395)
Q Consensus 186 ---~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l-------~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~ 251 (395)
.+ ..+..+++|+.|++++|+++ .+|... ... ++|+.|+|++|+++ .+|..+. .+++|+.|+|++
T Consensus 445 l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~ 522 (636)
T 4eco_A 445 ISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSY 522 (636)
T ss_dssp CCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCS
T ss_pred cCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCC
Confidence 11 12334677788888888777 444433 222 27888888888887 6777766 788888888888
Q ss_pred CccCccCcccccCCCCCCEEeC------cCCcCcccCCCC-cccCccccccccCCCCCCC
Q 043041 252 NRFFGGIPSSLSLLSGLSVMDL------SYNNLSGKIPSG-TQLQSFNASTYAGNELCGL 304 (395)
Q Consensus 252 N~l~~~~p~~l~~l~~L~~L~L------s~N~l~~~~p~~-~~l~~l~~~~~~gN~lc~~ 304 (395)
|++++ +|..+..+++|+.|++ ++|++.+.+|.. ..+.+++.+++++|.+...
T Consensus 523 N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~i 581 (636)
T 4eco_A 523 NSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV 581 (636)
T ss_dssp SCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC
T ss_pred CCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCcc
Confidence 88876 7777778888888888 456677777754 5677777778888866433
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.5e-32 Score=272.76 Aligned_cols=274 Identities=24% Similarity=0.230 Sum_probs=223.8
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCch-hccCCCCCCEEECCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPS-SLQNCSLLILMDLGR 79 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~ls~ 79 (395)
++|++++|.++ .+|..+..+++|++|++++|.+.+..|..++++++|++|++++|.+.+.+|. .+..+++|++|++++
T Consensus 281 ~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 359 (606)
T 3t6q_A 281 QELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359 (606)
T ss_dssp SEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCS
T ss_pred CEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCC
Confidence 57999999998 7888899999999999999999988888999999999999999998866654 488999999999999
Q ss_pred CcccccC--chhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCc-cccccccchhccccccccC
Q 043041 80 NALSGEI--PKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPK-CFNNFTAMAQEKSSVLSVT 156 (395)
Q Consensus 80 n~l~~~i--p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~l~~~~~~~~ 156 (395)
|.+.+.. |..+. .+++|++|++++|++.+..|..+..+++|++|++++|.+.+..+. .+..+++|+.+........
T Consensus 360 n~l~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 438 (606)
T 3t6q_A 360 DDIETSDCCNLQLR-NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438 (606)
T ss_dssp SCCCEEEESTTTTT-TCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCB
T ss_pred CccccccCcchhcc-cCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccC
Confidence 9998433 44554 689999999999999888888899999999999999999877654 4788888888776544332
Q ss_pred ccccccCCccccCCCCccccceEEEeecc--------ccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCC
Q 043041 157 SEYWFAGGLQLTTAGDFFSGQAVLTWKGS--------QYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRN 228 (395)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 228 (395)
...... -........+.+.+. ....+..+++|+.|++++|++++..|..+..+++|+.|+|++|
T Consensus 439 ~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 439 ISSEQL--------FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp TTCTTT--------TTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcCHHH--------HhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 211000 000111222222211 1234678899999999999999999999999999999999999
Q ss_pred cCcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCC
Q 043041 229 NLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSG 285 (395)
Q Consensus 229 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 285 (395)
++++..|..+..++.| .|++++|++++..|..+..+++|+.|++++|+++|.++..
T Consensus 511 ~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 566 (606)
T 3t6q_A 511 RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI 566 (606)
T ss_dssp CCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGH
T ss_pred ccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcH
Confidence 9999999999999999 9999999999988988999999999999999999887753
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9.5e-33 Score=276.65 Aligned_cols=284 Identities=18% Similarity=0.246 Sum_probs=223.3
Q ss_pred CCcccccCCCCccCCCCCCEEECCCCccccc-----------------CCCCCC--CCCCccEEecccccCcccCchhcc
Q 043041 7 NNLLSGRLPDCWPLFDRLRILDLANNNFSGK-----------------IPDSMG--SLPNIQILSLHNNSLTGELPSSLQ 67 (395)
Q Consensus 7 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-----------------~p~~~~--~l~~L~~L~L~~n~l~~~~p~~~~ 67 (395)
+|+++| +|..++++++|++|+|++|++++. +|+.++ ++++|++|+|++|.+.+.+|..+.
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 346777 899999999999999999999986 999999 999999999999999999999999
Q ss_pred CCCCCCEEECCCCc-ccc-cCchhHhhcC------CCccEEEccceeeccccCc--cCCCCCCccEEEcccCCCCCCCCc
Q 043041 68 NCSLLILMDLGRNA-LSG-EIPKWIGESL------PKLIVLSLMSNKFHGIIPF--QLCYLPFIQILDLSSNNIPGIIPK 137 (395)
Q Consensus 68 ~l~~L~~L~ls~n~-l~~-~ip~~~~~~l------~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~l~~n~l~~~~~~ 137 (395)
++++|++|++++|+ ++| .+|..++. + ++|++|++++|+++ .+|. .++.+++|++|++++|.++|.+|
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~-L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip- 347 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQA-LADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP- 347 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHH-HHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred cCCCCCEEECcCCCCCccccchHHHHh-hhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence 99999999999998 998 89998874 5 99999999999999 8888 89999999999999999998888
Q ss_pred cccccccchhccccccccCccccccCCccccCCCCcccc-ceEEEeec----cccccccc--cCcccEEECcCCCCccCC
Q 043041 138 CFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSG-QAVLTWKG----SQYQYQNT--LGLVKMLDLSSNKLGGEV 210 (395)
Q Consensus 138 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~--l~~L~~L~Ls~n~l~~~~ 210 (395)
.+..+++|+.+.......... +..-..... ...+.+.+ ..+..+.. +++|+.|++++|.+++.+
T Consensus 348 ~~~~l~~L~~L~L~~N~l~~l---------p~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~ 418 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQITEI---------PANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVD 418 (636)
T ss_dssp CCEEEEEESEEECCSSEEEEC---------CTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTT
T ss_pred hhCCCCCCCEEECCCCccccc---------cHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcc
Confidence 899999998887654433211 000000111 11122111 12333333 337889999999998888
Q ss_pred Chhhh-------cCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCccCcc-cccCC-------CCCCEEeCcC
Q 043041 211 PEEIM-------DLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPS-SLSLL-------SGLSVMDLSY 275 (395)
Q Consensus 211 p~~~~-------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l-------~~L~~L~Ls~ 275 (395)
|..+. .+++|+.|+|++|.+++..+..+..+++|+.|+|++|+++ .+|. .+... ++|+.|++++
T Consensus 419 p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~ 497 (636)
T 4eco_A 419 GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRF 497 (636)
T ss_dssp TCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCS
T ss_pred hhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcC
Confidence 88887 7788999999999998443444567899999999999998 5554 33333 2899999999
Q ss_pred CcCcccCCCC-c--ccCccccccccCCCCCCCC
Q 043041 276 NNLSGKIPSG-T--QLQSFNASTYAGNELCGLP 305 (395)
Q Consensus 276 N~l~~~~p~~-~--~l~~l~~~~~~gN~lc~~~ 305 (395)
|+++ .+|.. . .+.++..+++++|.+.+.|
T Consensus 498 N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip 529 (636)
T 4eco_A 498 NKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFP 529 (636)
T ss_dssp SCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCC
T ss_pred CcCC-ccChhhhhccCCCcCEEECCCCCCCCcC
Confidence 9998 56654 3 6788888899999777654
No 15
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=100.00 E-value=4.2e-32 Score=245.52 Aligned_cols=243 Identities=21% Similarity=0.150 Sum_probs=210.0
Q ss_pred EEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCc
Q 043041 2 YLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNA 81 (395)
Q Consensus 2 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~ 81 (395)
+++.+++.++ .+|..+ .++|+.|++++|++++..+..|+.+++|++|++++|.+++..|..|.++++|++|++++|.
T Consensus 15 ~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 15 TTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp EEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 6889999998 667655 4799999999999998888899999999999999999998889999999999999999998
Q ss_pred -ccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCcccc
Q 043041 82 -LSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYW 160 (395)
Q Consensus 82 -l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 160 (395)
+. .++...+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..
T Consensus 92 ~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------- 151 (285)
T 1ozn_A 92 QLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD------------------- 151 (285)
T ss_dssp TCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------
T ss_pred Ccc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc-------------------
Confidence 76 665444447999999999999999888899999999999999999998766655544
Q ss_pred ccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCC
Q 043041 161 FAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQ 240 (395)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 240 (395)
+++|+.|++++|++++..+..+..+++|+.|++++|.+++..|..+..
T Consensus 152 --------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 199 (285)
T 1ozn_A 152 --------------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199 (285)
T ss_dssp --------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred --------------------------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccC
Confidence 445699999999999777778999999999999999999888999999
Q ss_pred CCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCCcccCccccccccCC
Q 043041 241 LKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSGTQLQSFNASTYAGN 299 (395)
Q Consensus 241 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~l~~l~~~~~~gN 299 (395)
+++|+.|++++|++++..+..+..+++|+.|++++|++.+..+....+..+.......+
T Consensus 200 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~ 258 (285)
T 1ozn_A 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSS 258 (285)
T ss_dssp CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEEC
T ss_pred cccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccC
Confidence 99999999999999987777899999999999999999987665433444444444444
No 16
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=2.1e-31 Score=246.13 Aligned_cols=263 Identities=21% Similarity=0.246 Sum_probs=215.4
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
+.++++++.++ .+|..+. ++|+.|+|++|++++..+..|+++++|++|+|++|.+++..|..|.++++|++|++++|
T Consensus 34 ~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 34 RVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp TEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred eEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 46889999988 6777664 68999999999999877778999999999999999999888999999999999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCC--CCCccccccccchhccccccccCcc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPG--IIPKCFNNFTAMAQEKSSVLSVTSE 158 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~l~~~~~~~~~~ 158 (395)
.++ .+|..++ ++|++|++++|++++..+..+..+++|++|++++|.+.. ..+..+..+++|+.+..........
T Consensus 111 ~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 111 QLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp CCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred cCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 998 8888764 789999999999998877888999999999999999964 6677788888887766433222110
Q ss_pred ccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCccc
Q 043041 159 YWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKI 238 (395)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 238 (395)
+. ...++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..+
T Consensus 187 ----------------------------~~--~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 236 (330)
T 1xku_A 187 ----------------------------PQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236 (330)
T ss_dssp ----------------------------CS--SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG
T ss_pred ----------------------------Cc--cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhc
Confidence 00 112578999999999998888899999999999999999998878889
Q ss_pred CCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCCc-------ccCccccccccCCCC
Q 043041 239 GQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSGT-------QLQSFNASTYAGNEL 301 (395)
Q Consensus 239 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~-------~l~~l~~~~~~gN~l 301 (395)
..+++|+.|++++|+++ .+|..+..+++|++|++++|++++..+..- ....+..+++.+|.+
T Consensus 237 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 237 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred cCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 99999999999999998 788888899999999999999986554321 134555667777743
No 17
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=3.4e-32 Score=250.84 Aligned_cols=221 Identities=24% Similarity=0.265 Sum_probs=120.5
Q ss_pred CCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCCCccEEE
Q 043041 22 DRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLS 101 (395)
Q Consensus 22 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~ 101 (395)
++++.|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..+.++++|++|++++|.++ .+|..+. .+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~-~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIA-SLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGG-GCTTCCEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHh-cCcCCCEEE
Confidence 45556666666655 45555555666666666666655 55555555666666666666655 5555554 355666666
Q ss_pred ccceeeccccCccCCC---------CCCccEEEcccCCCCCCCCccccccccchhccccccccCccccccCCccccCCCC
Q 043041 102 LMSNKFHGIIPFQLCY---------LPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGD 172 (395)
Q Consensus 102 L~~n~l~~~~p~~l~~---------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 172 (395)
+++|++.+.+|..+.. +++|++|++++|.++ .+|..+..
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~------------------------------- 204 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN------------------------------- 204 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG-------------------------------
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcC-------------------------------
Confidence 6665555555554433 566666666666555 33333322
Q ss_pred ccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCC
Q 043041 173 FFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRN 252 (395)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 252 (395)
+++|++|++++|.++ .+|..+..+++|+.|+|++|++.+.+|..++.+++|+.|+|++|
T Consensus 205 --------------------l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n 263 (328)
T 4fcg_A 205 --------------------LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263 (328)
T ss_dssp --------------------CTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTC
T ss_pred --------------------CCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCC
Confidence 223355555555555 24444555555555555555555555555555555555555555
Q ss_pred ccCccCcccccCCCCCCEEeCcCCcCcccCCCC-cccCccccccccCC
Q 043041 253 RFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSG-TQLQSFNASTYAGN 299 (395)
Q Consensus 253 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~l~~l~~~~~~gN 299 (395)
.+.+.+|..+..+++|+.|++++|++.+.+|.. ..+..+..+.+..|
T Consensus 264 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 555555555555555555555555555555543 33444444444333
No 18
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.7e-31 Score=266.68 Aligned_cols=144 Identities=23% Similarity=0.197 Sum_probs=126.7
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++|||++|.+++..+..|.++++|++|+|++|++++..|.+|+++++|++|+|++|.+++..|..|.++++|++|++++|
T Consensus 35 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 114 (606)
T 3vq2_A 35 KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS
T ss_pred CEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC
Confidence 57999999999888889999999999999999999888999999999999999999999888999999999999999999
Q ss_pred cccccCc-hhHhhcCCCccEEEccceeecc-ccCccCCCCCCccEEEcccCCCCCCCCccccccccch
Q 043041 81 ALSGEIP-KWIGESLPKLIVLSLMSNKFHG-IIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMA 146 (395)
Q Consensus 81 ~l~~~ip-~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 146 (395)
.++ .++ ..+. .+++|++|++++|++.+ .+|..++.+++|++|++++|.+++..+..++.+.+|+
T Consensus 115 ~l~-~~~~~~~~-~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 115 KLA-SLESFPIG-QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180 (606)
T ss_dssp CCC-CSSSSCCT-TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCT
T ss_pred ccc-cccccccC-CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccc
Confidence 998 555 4444 69999999999999986 5688999999999999999999988777666655443
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1e-31 Score=269.39 Aligned_cols=141 Identities=23% Similarity=0.215 Sum_probs=127.2
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++|||++|+|++..|.+|.++++|++|+|++|+|++..|++|+++++|++|+|++|++++..+..|.++++|++|++++|
T Consensus 55 ~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N 134 (635)
T 4g8a_A 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 134 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS
T ss_pred CEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC
Confidence 58999999999888889999999999999999999888889999999999999999999877788999999999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeecc-ccCccCCCCCCccEEEcccCCCCCCCCcccccc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHG-IIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNF 142 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 142 (395)
.++ .+|...+..+++|++|++++|++++ ..|..++.+++|++|++++|++++..+..+..+
T Consensus 135 ~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L 196 (635)
T 4g8a_A 135 NLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196 (635)
T ss_dssp CCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred cCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccch
Confidence 999 7777655579999999999999975 467888999999999999999988776665443
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=6.2e-32 Score=269.08 Aligned_cols=293 Identities=19% Similarity=0.187 Sum_probs=227.0
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
+.+++++|.++...+..|..+++|+.|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++|++++|
T Consensus 54 ~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 133 (597)
T 3oja_B 54 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 133 (597)
T ss_dssp SEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC
Confidence 46889999998665566789999999999999999888889999999999999999999888888999999999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCcccc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYW 160 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 160 (395)
.++ .+|..++..+++|++|++++|.+++..|..+..+++|++|++++|.+++.....+ ++|..+............
T Consensus 134 ~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l---~~L~~L~l~~n~l~~l~~ 209 (597)
T 3oja_B 134 DLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI---PSLFHANVSYNLLSTLAI 209 (597)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGC---TTCSEEECCSSCCSEEEC
T ss_pred CCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhh---hhhhhhhcccCccccccC
Confidence 999 8888876679999999999999999989899999999999999999998654444 444444332221111000
Q ss_pred cc-------CCccccCC-CCccccceEEEeecc---ccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCc
Q 043041 161 FA-------GGLQLTTA-GDFFSGQAVLTWKGS---QYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNN 229 (395)
Q Consensus 161 ~~-------~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 229 (395)
.. ..+.+... .........+.+.+. ....+..+++|+.|+|++|.+++..|..+..+++|+.|+|++|.
T Consensus 210 ~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 289 (597)
T 3oja_B 210 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289 (597)
T ss_dssp CTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC
T ss_pred CchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC
Confidence 00 00000000 000111112222111 13456788899999999999998889999999999999999999
Q ss_pred CcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCCcccCccccccccCCCC
Q 043041 230 LTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSGTQLQSFNASTYAGNEL 301 (395)
Q Consensus 230 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~l~~l~~~~~~gN~l 301 (395)
+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.+++.. ...+..+..+++.+|.+
T Consensus 290 l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 290 LVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp CCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCE
T ss_pred CCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCC
Confidence 985 6777788999999999999998 67777888999999999999998653 34677888888999844
No 21
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=9.9e-32 Score=277.78 Aligned_cols=280 Identities=23% Similarity=0.224 Sum_probs=196.7
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccC-CCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKI-PDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGR 79 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~ 79 (395)
++|||++|.+++..|..|.++++|++|+|++|...+.+ |.+|+++++|++|+|++|.+++..|..|.++++|++|++++
T Consensus 27 ~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 106 (844)
T 3j0a_A 27 ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYF 106 (844)
T ss_dssp CEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTT
T ss_pred CEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcC
Confidence 57999999999999999999999999999999665555 88999999999999999999988899999999999999999
Q ss_pred CcccccCchh-HhhcCCCccEEEccceeeccccC-ccCCCCCCccEEEcccCCCCCCCCcccccc--ccchhcccccccc
Q 043041 80 NALSGEIPKW-IGESLPKLIVLSLMSNKFHGIIP-FQLCYLPFIQILDLSSNNIPGIIPKCFNNF--TAMAQEKSSVLSV 155 (395)
Q Consensus 80 n~l~~~ip~~-~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~l~~~~~~~ 155 (395)
|.+++.+|.. .+..+++|++|++++|.+++..+ ..++++++|++|++++|.+++..+..+..+ ++|+.+.......
T Consensus 107 n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l 186 (844)
T 3j0a_A 107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL 186 (844)
T ss_dssp CCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBS
T ss_pred CCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcc
Confidence 9999766654 23469999999999999987755 578999999999999999999888888776 5666555433222
Q ss_pred Ccccccc------------------CCccccCC-CC------------------------------------c-----cc
Q 043041 156 TSEYWFA------------------GGLQLTTA-GD------------------------------------F-----FS 175 (395)
Q Consensus 156 ~~~~~~~------------------~~~~~~~~-~~------------------------------------~-----~~ 175 (395)
....... ..+.+... .. . ..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~ 266 (844)
T 3j0a_A 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS 266 (844)
T ss_dssp CCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTS
T ss_pred ccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccC
Confidence 1110000 00000000 00 0 00
Q ss_pred cceEEEee-----ccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECc
Q 043041 176 GQAVLTWK-----GSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLS 250 (395)
Q Consensus 176 ~~~~~~~~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 250 (395)
....+.+. +..+..+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|.+++..|..|..+++|+.|+++
T Consensus 267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 346 (844)
T 3j0a_A 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346 (844)
T ss_dssp CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence 11111111 1122334555666666666666666666666666666666666666665666666666666666666
Q ss_pred CCccCccCcccccCCCCCCEEeCcCCcCcc
Q 043041 251 RNRFFGGIPSSLSLLSGLSVMDLSYNNLSG 280 (395)
Q Consensus 251 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 280 (395)
+|++.+..+..+..+++|+.|++++|.+++
T Consensus 347 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp SCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred CCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 666665555566666666666666666653
No 22
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=3.1e-31 Score=245.12 Aligned_cols=262 Identities=21% Similarity=0.251 Sum_probs=216.4
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
+.++++++.++ .+|..+. ++|+.|++++|++++..|.+|+++++|++|+|++|.+++..|..|.++++|++|++++|
T Consensus 36 ~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 36 RVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred CEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 46899999998 6777664 78999999999999888889999999999999999999888999999999999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCC--CCCCccccccccchhccccccccCcc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIP--GIIPKCFNNFTAMAQEKSSVLSVTSE 158 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~l~~~~~~~~~~ 158 (395)
.++ .+|..++ ++|++|++++|++++..+..+..+++|++|++++|.++ +..+..+..+ +|+.+..........
T Consensus 113 ~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 113 HLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp CCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred cCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence 998 8888764 79999999999999777778999999999999999996 3667777776 666665433222110
Q ss_pred ccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCccc
Q 043041 159 YWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKI 238 (395)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 238 (395)
+. ...++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+
T Consensus 188 ----------------------------~~--~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~ 237 (332)
T 2ft3_A 188 ----------------------------PK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL 237 (332)
T ss_dssp ----------------------------CS--SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG
T ss_pred ----------------------------Cc--cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh
Confidence 00 012578999999999998888889999999999999999998888889
Q ss_pred CCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCC-c------ccCccccccccCCCC
Q 043041 239 GQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSG-T------QLQSFNASTYAGNEL 301 (395)
Q Consensus 239 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~------~l~~l~~~~~~gN~l 301 (395)
..+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+.. . ....+..+++.+|.+
T Consensus 238 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 238 SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp GGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred hCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence 99999999999999998 78888899999999999999998665432 1 134466677777743
No 23
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.98 E-value=2.5e-31 Score=256.10 Aligned_cols=249 Identities=21% Similarity=0.196 Sum_probs=196.2
Q ss_pred EEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCc
Q 043041 2 YLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNA 81 (395)
Q Consensus 2 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~ 81 (395)
.++.+++.++ .+|..+. ++++.|+|++|++++..|..|+++++|++|+|++|.+++..+..|.++++|++|++++|.
T Consensus 58 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 58 KVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 4566777776 5666554 578888888888887777788888888888888888887777778888888888888888
Q ss_pred ccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEccc-CCCCCCCCccccccccchhccccccccCcccc
Q 043041 82 LSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSS-NNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYW 160 (395)
Q Consensus 82 l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 160 (395)
++ .+|...+..+++|++|++++|+++...+..+..+++|++|++++ |.+....+..|..+++|+.+..........
T Consensus 135 l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-- 211 (452)
T 3zyi_A 135 LT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-- 211 (452)
T ss_dssp CS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--
T ss_pred CC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--
Confidence 87 66666555678888888888888776666778888888888887 444444445677777776665433222110
Q ss_pred ccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCC
Q 043041 161 FAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQ 240 (395)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 240 (395)
..+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|.+++..|..|..
T Consensus 212 ---------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 264 (452)
T 3zyi_A 212 ---------------------------PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG 264 (452)
T ss_dssp ---------------------------CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred ---------------------------ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcC
Confidence 12346778999999999999888999999999999999999999888999999
Q ss_pred CCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCC
Q 043041 241 LKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIP 283 (395)
Q Consensus 241 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 283 (395)
+++|+.|+|++|++++..+..+..+++|+.|++++|++.+...
T Consensus 265 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp CTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred CCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 9999999999999998777888999999999999999987654
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.98 E-value=4.8e-31 Score=263.48 Aligned_cols=116 Identities=20% Similarity=0.275 Sum_probs=99.1
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++|||++|.+++..|..|.++++|++|+|++|++++..|.+|+++++|++|+|++|.+++..+..++++++|++|++++|
T Consensus 59 ~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 138 (606)
T 3vq2_A 59 QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138 (606)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS
T ss_pred cEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC
Confidence 57899999999888888999999999999999999888999999999999999999998777788999999999999999
Q ss_pred cccc-cCchhHhhcCCCccEEEccceeeccccCccCCC
Q 043041 81 ALSG-EIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCY 117 (395)
Q Consensus 81 ~l~~-~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 117 (395)
.+.+ .+|..+. ++++|++|++++|++++..|..++.
T Consensus 139 ~l~~~~lp~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~ 175 (606)
T 3vq2_A 139 FIHSCKLPAYFS-NLTNLVHVDLSYNYIQTITVNDLQF 175 (606)
T ss_dssp CCCCCCCCGGGG-TCTTCCEEECCSSCCCEECTTTTHH
T ss_pred cccceechHhHh-hcCCCCEEEccCCcceecChhhhhh
Confidence 9874 5687776 5899999999988887766554433
No 25
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=1.1e-30 Score=241.32 Aligned_cols=264 Identities=19% Similarity=0.195 Sum_probs=214.2
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++|+|++|++++..+..|.++++|++|+|++|++++..|..|+++++|++|++++|.++ .+|..+. ++|++|++++|
T Consensus 55 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n 131 (330)
T 1xku_A 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHEN 131 (330)
T ss_dssp CEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSS
T ss_pred eEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCC
Confidence 47999999999888888999999999999999999888999999999999999999999 5666554 79999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeec--cccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCcc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFH--GIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSE 158 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~ 158 (395)
.++ .++...+..+++|++|++++|.+. +..+..+..+++|++|++++|.++......+ ++|+.+.......
T Consensus 132 ~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l--- 204 (330)
T 1xku_A 132 EIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKI--- 204 (330)
T ss_dssp CCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC---TTCSEEECTTSCC---
T ss_pred ccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc---ccCCEEECCCCcC---
Confidence 999 677666667999999999999996 3778889999999999999999986443333 4555544322211
Q ss_pred ccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCccc
Q 043041 159 YWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKI 238 (395)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 238 (395)
.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|+|++|.++ .+|..+
T Consensus 205 ------------------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 259 (330)
T 1xku_A 205 ------------------------TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL 259 (330)
T ss_dssp ------------------------CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred ------------------------CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhh
Confidence 1112334567889999999999999888889999999999999999999 889999
Q ss_pred CCCCCCCEEECcCCccCccCcccccC------CCCCCEEeCcCCcCcc-cCC-CC-cccCccccccccCC
Q 043041 239 GQLKSLDFLDLSRNRFFGGIPSSLSL------LSGLSVMDLSYNNLSG-KIP-SG-TQLQSFNASTYAGN 299 (395)
Q Consensus 239 ~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~Ls~N~l~~-~~p-~~-~~l~~l~~~~~~gN 299 (395)
..+++|+.|++++|++++..+..|.. .+.|+.+++++|++.. .++ .. ..+..+..+++.+|
T Consensus 260 ~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 99999999999999999776666643 4789999999999874 222 21 34555666667665
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.98 E-value=2.9e-31 Score=260.23 Aligned_cols=293 Identities=21% Similarity=0.187 Sum_probs=188.1
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++||+++|+++ .+|..+. ++|+.|+|++|++++..|.+|.++++|++|+|++|++++..|..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 46788888887 5666655 78888888888887766677888888888888888888777778888888888888888
Q ss_pred cccccCchhHhhcCCCccEEEccceeecc-ccCccCCCCCCccEEEcccCCCCCCCCccccccccc--hhcccccccc--
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHG-IIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAM--AQEKSSVLSV-- 155 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~l~~~~~~~-- 155 (395)
+++ .+|.. .+++|++|++++|++++ .+|..++.+++|++|++++|.+++. .+..+++| +.+.......
T Consensus 80 ~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 80 KLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLGETYG 152 (520)
T ss_dssp CCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEECTTTT
T ss_pred cee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEeecccccc
Confidence 887 77766 47888888888888776 3567777788888888777777642 23333333 3222211111
Q ss_pred Cc----cccc----------------------------------------------------------------------
Q 043041 156 TS----EYWF---------------------------------------------------------------------- 161 (395)
Q Consensus 156 ~~----~~~~---------------------------------------------------------------------- 161 (395)
.. .+..
T Consensus 153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEE
T ss_pred cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcccccccc
Confidence 00 0000
Q ss_pred ----------------c-----CCcccc-CCCCc--------ccc--------------------------ceEEEeecc
Q 043041 162 ----------------A-----GGLQLT-TAGDF--------FSG--------------------------QAVLTWKGS 185 (395)
Q Consensus 162 ----------------~-----~~~~~~-~~~~~--------~~~--------------------------~~~~~~~~~ 185 (395)
. ..+.+. ..+.. ... ...+.+.+.
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n 312 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESS
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCC
Confidence 0 000000 00000 000 000000000
Q ss_pred c--ccc-ccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcc--cCCcccCCCCCCCEEECcCCccCccCcc
Q 043041 186 Q--YQY-QNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTG--QITPKIGQLKSLDFLDLSRNRFFGGIPS 260 (395)
Q Consensus 186 ~--~~~-~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 260 (395)
. ... ...+++|++|++++|++++.+|..+..+++|+.|++++|++++ .+|..++.+++|++|++++|++++.+|.
T Consensus 313 ~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~ 392 (520)
T 2z7x_B 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392 (520)
T ss_dssp CCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG
T ss_pred ccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccccc
Confidence 0 000 1567788888888888887788888888888888888888876 5567788888888888888888875664
Q ss_pred -cccCCCCCCEEeCcCCcCcccCCCCcccCccccccccCCCCCCC
Q 043041 261 -SLSLLSGLSVMDLSYNNLSGKIPSGTQLQSFNASTYAGNELCGL 304 (395)
Q Consensus 261 -~l~~l~~L~~L~Ls~N~l~~~~p~~~~l~~l~~~~~~gN~lc~~ 304 (395)
.+..+++|+.|++++|++++.+|.... ..+..+++++|.+...
T Consensus 393 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~L~~L~Ls~N~l~~i 436 (520)
T 2z7x_B 393 GDCSWTKSLLSLNMSSNILTDTIFRCLP-PRIKVLDLHSNKIKSI 436 (520)
T ss_dssp CSCCCCTTCCEEECCSSCCCGGGGGSCC-TTCCEEECCSSCCCCC
T ss_pred chhccCccCCEEECcCCCCCcchhhhhc-ccCCEEECCCCccccc
Confidence 367777888888888887776654321 4566666666655433
No 27
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.98 E-value=4.5e-31 Score=269.86 Aligned_cols=294 Identities=20% Similarity=0.206 Sum_probs=223.1
Q ss_pred CEEEccCCcccc-----------------cCCCCcc--CCCCCCEEECCCCcccccCCCCCCCCCCccEEeccccc-Ccc
Q 043041 1 MYLDLSNNLLSG-----------------RLPDCWP--LFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNS-LTG 60 (395)
Q Consensus 1 ~~L~Ls~n~l~~-----------------~~p~~~~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~ 60 (395)
++|+|++|.|++ .+|..++ ++++|+.|+|++|++.+.+|..|+++++|++|+|++|+ +++
T Consensus 451 ~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg 530 (876)
T 4ecn_A 451 QIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA 530 (876)
T ss_dssp CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCH
T ss_pred CEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCccc
Confidence 579999999998 3899988 99999999999999999999999999999999999998 998
Q ss_pred -cCchhccCCC-------CCCEEECCCCcccccCch--hHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCC
Q 043041 61 -ELPSSLQNCS-------LLILMDLGRNALSGEIPK--WIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNN 130 (395)
Q Consensus 61 -~~p~~~~~l~-------~L~~L~ls~n~l~~~ip~--~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 130 (395)
.+|..+..++ +|++|++++|.++ .+|. .+. .+++|++|++++|+++ .+| .++.+++|+.|++++|.
T Consensus 531 ~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~-~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 531 AQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ-KMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQ 606 (876)
T ss_dssp HHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT-TCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSC
T ss_pred ccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh-cCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCc
Confidence 7888776665 9999999999999 9998 676 6999999999999999 778 89999999999999999
Q ss_pred CCCCCCcccccccc-chhccccccccCccccccC-------------CccccCCCC---------ccccceEEEeecc--
Q 043041 131 IPGIIPKCFNNFTA-MAQEKSSVLSVTSEYWFAG-------------GLQLTTAGD---------FFSGQAVLTWKGS-- 185 (395)
Q Consensus 131 l~~~~~~~~~~l~~-L~~l~~~~~~~~~~~~~~~-------------~~~~~~~~~---------~~~~~~~~~~~~~-- 185 (395)
+. .+|..+..+++ |+.+............... .+.+..... .......+.+.+.
T Consensus 607 l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L 685 (876)
T 4ecn_A 607 IE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI 685 (876)
T ss_dssp CS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCC
T ss_pred cc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcC
Confidence 99 78888998888 8888765544332111000 011111000 0011222222221
Q ss_pred --ccc-cccccCcccEEECcCCCCccCCChhhhc--------CcCCCEEeCCCCcCcccCCcccC--CCCCCCEEECcCC
Q 043041 186 --QYQ-YQNTLGLVKMLDLSSNKLGGEVPEEIMD--------LVGLIAMNLSRNNLTGQITPKIG--QLKSLDFLDLSRN 252 (395)
Q Consensus 186 --~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~--------l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N 252 (395)
.+. .+..+++|+.|+|++|+++ .+|..+.. +++|+.|+|++|+++ .+|..+. .+++|+.|+|++|
T Consensus 686 ~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N 763 (876)
T 4ecn_A 686 QKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYN 763 (876)
T ss_dssp CSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSS
T ss_pred CccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCC
Confidence 121 2235677888888888888 55554332 237888888888888 6777776 7888888888888
Q ss_pred ccCccCcccccCCCCCCEEeCcC------CcCcccCCCC-cccCccccccccCCCCC
Q 043041 253 RFFGGIPSSLSLLSGLSVMDLSY------NNLSGKIPSG-TQLQSFNASTYAGNELC 302 (395)
Q Consensus 253 ~l~~~~p~~l~~l~~L~~L~Ls~------N~l~~~~p~~-~~l~~l~~~~~~gN~lc 302 (395)
++++ +|..+..+++|+.|+|++ |++.+.+|.. ..+.+|+.+++++|.+.
T Consensus 764 ~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~ 819 (876)
T 4ecn_A 764 CFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR 819 (876)
T ss_dssp CCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC
T ss_pred CCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCC
Confidence 8886 677778888888888866 6777777754 56777888888888663
No 28
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=6.5e-31 Score=242.99 Aligned_cols=263 Identities=20% Similarity=0.205 Sum_probs=214.5
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++|++++|.+++..|..|.++++|++|+|++|++++..|.+|+++++|++|++++|.++ .+|..+. ++|++|++++|
T Consensus 57 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n 133 (332)
T 2ft3_A 57 TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDN 133 (332)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSS
T ss_pred eEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCC
Confidence 57999999999888889999999999999999999888999999999999999999999 5666554 89999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeec--cccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCcc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFH--GIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSE 158 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~ 158 (395)
.++ .+|...+..+++|++|++++|.++ +..+..+..+ +|++|++++|.+++.....+ ++|+.+.......
T Consensus 134 ~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~i--- 205 (332)
T 2ft3_A 134 RIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKI--- 205 (332)
T ss_dssp CCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC---SSCSCCBCCSSCC---
T ss_pred ccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc---CCCCEEECCCCcC---
Confidence 998 788776667999999999999996 4677888888 99999999999987443333 4455444322211
Q ss_pred ccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCccc
Q 043041 159 YWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKI 238 (395)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 238 (395)
.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|..+
T Consensus 206 ------------------------~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 260 (332)
T 2ft3_A 206 ------------------------QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL 260 (332)
T ss_dssp ------------------------CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG
T ss_pred ------------------------CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh
Confidence 1112234567889999999999999888889999999999999999999 889999
Q ss_pred CCCCCCCEEECcCCccCccCcccccC------CCCCCEEeCcCCcCc--ccCCCC-cccCccccccccCC
Q 043041 239 GQLKSLDFLDLSRNRFFGGIPSSLSL------LSGLSVMDLSYNNLS--GKIPSG-TQLQSFNASTYAGN 299 (395)
Q Consensus 239 ~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~Ls~N~l~--~~~p~~-~~l~~l~~~~~~gN 299 (395)
..+++|+.|++++|++++..+..+.. .+.|+.|++++|++. +..|.. ..++.++.+++.+|
T Consensus 261 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 99999999999999999777666654 367999999999987 333332 45666777777766
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.98 E-value=1.2e-31 Score=264.69 Aligned_cols=150 Identities=17% Similarity=0.145 Sum_probs=132.5
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++|||++|++++..|..|.++++|++|+|++|++++..|++|+++++|++|+|++|.+++..|..|+++++|++|++++|
T Consensus 29 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 108 (549)
T 2z81_A 29 KSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108 (549)
T ss_dssp CEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC
T ss_pred cEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC
Confidence 57999999999888999999999999999999999988899999999999999999999888888999999999999999
Q ss_pred cccc-cCchhHhhcCCCccEEEccceeecccc-CccCCCCCCccEEEcccCCCCCCCCccccccccchhcccc
Q 043041 81 ALSG-EIPKWIGESLPKLIVLSLMSNKFHGII-PFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSS 151 (395)
Q Consensus 81 ~l~~-~ip~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~ 151 (395)
.+++ .+|..+. .+++|++|++++|++.+.+ +..+..+++|++|++++|.+++..|..+..+++|+.+...
T Consensus 109 ~l~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 109 PYQTLGVTSLFP-NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp CCSSSCSSCSCT-TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred cccccchhhhhh-ccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 9984 3455555 6999999999999844444 4689999999999999999999999999888888777643
No 30
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=7.8e-31 Score=252.66 Aligned_cols=251 Identities=22% Similarity=0.205 Sum_probs=213.2
Q ss_pred CCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCCCccEEEc
Q 043041 23 RLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSL 102 (395)
Q Consensus 23 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L 102 (395)
..+.++.++..++ .+|..+. +++++|+|++|.+++..|..|.++++|++|++++|.++ .++...+.++++|++|++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEEC
Confidence 4578999999988 5777664 68999999999999888999999999999999999999 565555557999999999
Q ss_pred cceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccccccCCccccCCCCccccceEEEe
Q 043041 103 MSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTW 182 (395)
Q Consensus 103 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (395)
++|++++..+..+..+++|++|++++|.+....+..|..+++|+.+..........
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~------------------------ 186 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY------------------------ 186 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE------------------------
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccc------------------------
Confidence 99999988888899999999999999999988888899999998877533211110
Q ss_pred eccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCccCcccc
Q 043041 183 KGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSL 262 (395)
Q Consensus 183 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 262 (395)
.....+..+++|+.|++++|++++ +| .+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..|..+
T Consensus 187 --i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 262 (452)
T 3zyi_A 187 --ISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF 262 (452)
T ss_dssp --ECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTT
T ss_pred --cChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHh
Confidence 011235678899999999999994 45 58899999999999999999999999999999999999999999889999
Q ss_pred cCCCCCCEEeCcCCcCcccCCCC-cccCccccccccCC-CCCCCC
Q 043041 263 SLLSGLSVMDLSYNNLSGKIPSG-TQLQSFNASTYAGN-ELCGLP 305 (395)
Q Consensus 263 ~~l~~L~~L~Ls~N~l~~~~p~~-~~l~~l~~~~~~gN-~lc~~~ 305 (395)
..+++|+.|+|++|++++..+.. ..+..+..+++.+| .-|.+.
T Consensus 263 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 263 DGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred cCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 99999999999999999766654 56788889999999 556543
No 31
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=2.5e-31 Score=245.01 Aligned_cols=223 Identities=19% Similarity=0.247 Sum_probs=204.9
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..+.++++|++|++++|
T Consensus 84 ~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 84 VALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp CEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEE
T ss_pred eEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCC
Confidence 47999999998 78988999999999999999999 89999999999999999999999 78999999999999999998
Q ss_pred cccccCchhHh--------hcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccc
Q 043041 81 ALSGEIPKWIG--------ESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSV 152 (395)
Q Consensus 81 ~l~~~ip~~~~--------~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~ 152 (395)
.+.+.+|..+. .++++|++|++++|+++ .+|..+..+++|++|++++|.+++. |..+.
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l-~~~l~------------ 226 (328)
T 4fcg_A 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL-GPAIH------------ 226 (328)
T ss_dssp TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCC-CGGGG------------
T ss_pred CCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcC-chhhc------------
Confidence 88889998764 24999999999999999 7888999999999999999999864 33343
Q ss_pred cccCccccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcc
Q 043041 153 LSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTG 232 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 232 (395)
.+++|++|++++|.+.+.+|..+..+++|+.|+|++|++.+
T Consensus 227 ---------------------------------------~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 227 ---------------------------------------HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp ---------------------------------------GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred ---------------------------------------cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence 34556999999999999999999999999999999999999
Q ss_pred cCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCc
Q 043041 233 QITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLS 279 (395)
Q Consensus 233 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 279 (395)
.+|..++.+++|+.|+|++|++.+.+|..+.++++|+.+++..|.+.
T Consensus 268 ~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 99999999999999999999999999999999999999999987665
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=6.6e-31 Score=260.10 Aligned_cols=114 Identities=20% Similarity=0.258 Sum_probs=88.6
Q ss_pred cccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcc--cCCcccCCCCCCCEEECcCCccCccCcc-cccCCCC
Q 043041 191 NTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTG--QITPKIGQLKSLDFLDLSRNRFFGGIPS-SLSLLSG 267 (395)
Q Consensus 191 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~ 267 (395)
..+++|++|++++|.+++.+|..+..+++|+.|++++|++++ .+|..++.+++|+.|++++|++++.+|. .+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 567889999999999998888888899999999999999886 3456788889999999999999875554 4777888
Q ss_pred CCEEeCcCCcCcccCCCCcccCccccccccCCCCCCCC
Q 043041 268 LSVMDLSYNNLSGKIPSGTQLQSFNASTYAGNELCGLP 305 (395)
Q Consensus 268 L~~L~Ls~N~l~~~~p~~~~l~~l~~~~~~gN~lc~~~ 305 (395)
|+.|++++|++++.+|.... .++..+++++|.+...|
T Consensus 430 L~~L~l~~n~l~~~~~~~l~-~~L~~L~L~~N~l~~ip 466 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP-PKVKVLDLHNNRIMSIP 466 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC-TTCSEEECCSSCCCCCC
T ss_pred CCEEECCCCCCCcchhhhhc-CcCCEEECCCCcCcccC
Confidence 88888888888776665321 46666677777555433
No 33
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=9.5e-31 Score=251.18 Aligned_cols=249 Identities=20% Similarity=0.204 Sum_probs=203.2
Q ss_pred EEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCc
Q 043041 2 YLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNA 81 (395)
Q Consensus 2 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~ 81 (395)
.++.+++.++ .+|..+. ++++.|+|++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|++++|.
T Consensus 47 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 47 KVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 4667777787 6776665 678888999888888888888888889999999888887777888888889999998888
Q ss_pred ccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEccc-CCCCCCCCccccccccchhccccccccCcccc
Q 043041 82 LSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSS-NNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYW 160 (395)
Q Consensus 82 l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 160 (395)
++ .+|...+..+++|++|++++|+++...+..|..+++|++|++++ +.+....+..|..+++|+.+..........
T Consensus 124 l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-- 200 (440)
T 3zyj_A 124 LT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-- 200 (440)
T ss_dssp CS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC--
T ss_pred CC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc--
Confidence 88 77776555788889999988888877777888888899999888 445544555777777777766433322110
Q ss_pred ccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCC
Q 043041 161 FAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQ 240 (395)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 240 (395)
..+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|.+++..+..|..
T Consensus 201 ---------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 253 (440)
T 3zyj_A 201 ---------------------------PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253 (440)
T ss_dssp ---------------------------CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT
T ss_pred ---------------------------cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcC
Confidence 12356778999999999999888999999999999999999999888999999
Q ss_pred CCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCC
Q 043041 241 LKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIP 283 (395)
Q Consensus 241 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 283 (395)
+++|+.|+|++|++++..+..+..+++|+.|++++|++.+...
T Consensus 254 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 9999999999999998777888999999999999999987654
No 34
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=6.1e-31 Score=252.55 Aligned_cols=225 Identities=21% Similarity=0.201 Sum_probs=195.3
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++|+|++|++++..+..|.++++|+.|+|++|++++..+.+|.++++|++|+|++|++++..+..|..+++|++|++++|
T Consensus 67 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 146 (440)
T 3zyj_A 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146 (440)
T ss_dssp SEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC
T ss_pred cEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC
Confidence 47999999999888899999999999999999999888899999999999999999999777778999999999999999
Q ss_pred cccccCchhHhhcCCCccEEEccce-eeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSN-KFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEY 159 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 159 (395)
.++ .+|...+..+++|++|++++| .+....+..|..+++|++|++++|.++.. | .+..+++|+.++.......
T Consensus 147 ~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~--- 220 (440)
T 3zyj_A 147 PIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLS--- 220 (440)
T ss_dssp CCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCC---
T ss_pred ccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c-ccCCCcccCEEECCCCccC---
Confidence 999 788766668999999999995 55555556799999999999999999854 3 4677777777664333221
Q ss_pred cccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccC
Q 043041 160 WFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIG 239 (395)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 239 (395)
+..+..+..+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..|.
T Consensus 221 ------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 276 (440)
T 3zyj_A 221 ------------------------AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276 (440)
T ss_dssp ------------------------EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS
T ss_pred ------------------------ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhc
Confidence 11233456788999999999999999999999999999999999999988888899
Q ss_pred CCCCCCEEECcCCccC
Q 043041 240 QLKSLDFLDLSRNRFF 255 (395)
Q Consensus 240 ~l~~L~~L~Ls~N~l~ 255 (395)
.+++|+.|+|++|.+.
T Consensus 277 ~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 277 PLHHLERIHLHHNPWN 292 (440)
T ss_dssp SCTTCCEEECCSSCEE
T ss_pred cccCCCEEEcCCCCcc
Confidence 9999999999999886
No 35
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.5e-31 Score=244.38 Aligned_cols=252 Identities=21% Similarity=0.206 Sum_probs=201.4
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcc--cCchhccCCCCCCEEECC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTG--ELPSSLQNCSLLILMDLG 78 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~ls 78 (395)
+.++.+++.++ .+|..+. ++|+.|+|++|+++...+..|+++++|++|+|++|.++. ..+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 36889999998 6777554 689999999999996555668999999999999999983 336788889999999999
Q ss_pred CCcccccCchhHhhcCCCccEEEccceeeccccC-ccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCc
Q 043041 79 RNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIP-FQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTS 157 (395)
Q Consensus 79 ~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~ 157 (395)
+|.+. .+|..+. .+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|+.+.........
T Consensus 87 ~n~i~-~l~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 87 FNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp SCSEE-EEEEEEE-TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCccc-cChhhcC-CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 99998 7888766 59999999999999997665 678999999999999999998888888888887766543222111
Q ss_pred cccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcc
Q 043041 158 EYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPK 237 (395)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 237 (395)
...+..+..+++|+.|++++|.+++..|..+..+++|+.|+|++|.+++..+..
T Consensus 165 --------------------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 218 (306)
T 2z66_A 165 --------------------------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 218 (306)
T ss_dssp --------------------------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGG
T ss_pred --------------------------ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhh
Confidence 012233456777888888888888777778888888888888888888766667
Q ss_pred cCCCCCCCEEECcCCccCccCcccccCCC-CCCEEeCcCCcCcccCC
Q 043041 238 IGQLKSLDFLDLSRNRFFGGIPSSLSLLS-GLSVMDLSYNNLSGKIP 283 (395)
Q Consensus 238 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p 283 (395)
+..+++|+.|++++|++++..|..+..++ +|+.|++++|++++..+
T Consensus 219 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 219 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 78888888888888888877777777774 78888888888876544
No 36
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=4.5e-31 Score=241.21 Aligned_cols=245 Identities=19% Similarity=0.208 Sum_probs=202.6
Q ss_pred CEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccc--cCchhHhhcCCCccEEEc
Q 043041 25 RILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSG--EIPKWIGESLPKLIVLSL 102 (395)
Q Consensus 25 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~--~ip~~~~~~l~~L~~L~L 102 (395)
+.++.+++.++ .+|..+. ++|++|+|++|.++...+..|.++++|++|++++|.++. .+|..+. .+++|++|++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF-GTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH-SCSCCCEEEC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccc-cccccCEEEC
Confidence 57899999998 5676554 689999999999996555668999999999999999972 2366666 5999999999
Q ss_pred cceeeccccCccCCCCCCccEEEcccCCCCCCCC-ccccccccchhccccccccCccccccCCccccCCCCccccceEEE
Q 043041 103 MSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIP-KCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLT 181 (395)
Q Consensus 103 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (395)
++|.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|+.+........
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~------------------------- 139 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR------------------------- 139 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE-------------------------
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCC-------------------------
Confidence 999998 466778999999999999999998766 67888888877764332221
Q ss_pred eeccccccccccCcccEEECcCCCCcc-CCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCccCcc
Q 043041 182 WKGSQYQYQNTLGLVKMLDLSSNKLGG-EVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPS 260 (395)
Q Consensus 182 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 260 (395)
+..+..+..+++|+.|++++|.+++ ..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+.
T Consensus 140 --~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 217 (306)
T 2z66_A 140 --VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217 (306)
T ss_dssp --ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG
T ss_pred --ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh
Confidence 1122335667889999999999986 5788899999999999999999988899999999999999999999987777
Q ss_pred cccCCCCCCEEeCcCCcCcccCCCC-ccc-CccccccccCCCC
Q 043041 261 SLSLLSGLSVMDLSYNNLSGKIPSG-TQL-QSFNASTYAGNEL 301 (395)
Q Consensus 261 ~l~~l~~L~~L~Ls~N~l~~~~p~~-~~l-~~l~~~~~~gN~l 301 (395)
.+..+++|+.|++++|++++.+|.. ..+ ..+..+++.+|.+
T Consensus 218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 8899999999999999999887764 445 4788888888844
No 37
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.6e-31 Score=260.62 Aligned_cols=296 Identities=20% Similarity=0.214 Sum_probs=214.3
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++|||++|.+++..|..|.++++|++|+|++|++++..|.+|+++++|++|+|++|+++ .+|.. .+++|++|++++|
T Consensus 24 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N 100 (520)
T 2z7x_B 24 TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFN 100 (520)
T ss_dssp SEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSS
T ss_pred cEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCC
Confidence 57999999999877788999999999999999999888999999999999999999999 56655 8999999999999
Q ss_pred cccc-cCchhHhhcCCCccEEEccceeeccccCccCCCCCCc--cEEEcccCCC--CCCCCccccccc------------
Q 043041 81 ALSG-EIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFI--QILDLSSNNI--PGIIPKCFNNFT------------ 143 (395)
Q Consensus 81 ~l~~-~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~l~~n~l--~~~~~~~~~~l~------------ 143 (395)
.+++ .+|..+. .+++|++|++++|++++ ..+..+++| ++|++++|.+ .+..|..+..+.
T Consensus 101 ~l~~~~~p~~~~-~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~ 176 (520)
T 2z7x_B 101 AFDALPICKEFG-NMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176 (520)
T ss_dssp CCSSCCCCGGGG-GCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSS
T ss_pred ccccccchhhhc-cCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCc
Confidence 9985 4677776 59999999999998875 234555555 7777777766 444444443321
Q ss_pred --------------c---------------------------------------------------------chhccccc
Q 043041 144 --------------A---------------------------------------------------------MAQEKSSV 152 (395)
Q Consensus 144 --------------~---------------------------------------------------------L~~l~~~~ 152 (395)
+ |+.+....
T Consensus 177 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 256 (520)
T 2z7x_B 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256 (520)
T ss_dssp CCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEE
T ss_pred chhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeec
Confidence 1 11111111
Q ss_pred cccCcccc--c-----c------------------------------------CCccccCCC--CccccceEEEe-----
Q 043041 153 LSVTSEYW--F-----A------------------------------------GGLQLTTAG--DFFSGQAVLTW----- 182 (395)
Q Consensus 153 ~~~~~~~~--~-----~------------------------------------~~~~~~~~~--~~~~~~~~~~~----- 182 (395)
........ . . ....+.... ........+.+
T Consensus 257 n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l 336 (520)
T 2z7x_B 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336 (520)
T ss_dssp EEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCC
T ss_pred ccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCcc
Confidence 11000000 0 0 000000000 11222233333
Q ss_pred eccccccccccCcccEEECcCCCCcc--CCChhhhcCcCCCEEeCCCCcCcccCCcc-cCCCCCCCEEECcCCccCccCc
Q 043041 183 KGSQYQYQNTLGLVKMLDLSSNKLGG--EVPEEIMDLVGLIAMNLSRNNLTGQITPK-IGQLKSLDFLDLSRNRFFGGIP 259 (395)
Q Consensus 183 ~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p 259 (395)
.+..+..+..+++|+.|++++|++++ .+|..+..+++|+.|++++|.+++.+|.. +..+++|+.|++++|++++.+|
T Consensus 337 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 416 (520)
T 2z7x_B 337 TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF 416 (520)
T ss_dssp CTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG
T ss_pred ChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchh
Confidence 23345667889999999999999996 56678999999999999999999756654 8889999999999999988877
Q ss_pred ccccCCCCCCEEeCcCCcCcccCCC-CcccCccccccccCCCCCCCCC
Q 043041 260 SSLSLLSGLSVMDLSYNNLSGKIPS-GTQLQSFNASTYAGNELCGLPL 306 (395)
Q Consensus 260 ~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~l~~~~~~gN~lc~~~~ 306 (395)
..+. ++|+.|++++|+++ .+|. ...+.+++.+++.+|.+...|.
T Consensus 417 ~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~ 461 (520)
T 2z7x_B 417 RCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPD 461 (520)
T ss_dssp GSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCT
T ss_pred hhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCH
Confidence 7654 78999999999998 5554 3678888889999997765543
No 38
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.2e-30 Score=258.67 Aligned_cols=304 Identities=21% Similarity=0.213 Sum_probs=214.6
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++|||++|++++..+.+|.++++|++|+|++|++++..|.+|+++++|++|+|++|.+++..|..|.++++|++|++++|
T Consensus 31 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 110 (570)
T 2z63_A 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110 (570)
T ss_dssp CEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc
Confidence 47899999999888888999999999999999999888888999999999999999999877888999999999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeecc-ccCccCCCCCCccEEEcccCCCCCCCCccccccccc----hhcccccccc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHG-IIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAM----AQEKSSVLSV 155 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----~~l~~~~~~~ 155 (395)
.++ .+|...+..+++|++|++++|.+.+ .+|..++.+++|++|++++|.+++..+..+..+.+| ..+.......
T Consensus 111 ~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l 189 (570)
T 2z63_A 111 NLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189 (570)
T ss_dssp CCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred ccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCc
Confidence 998 6665333468999999999999886 468889999999999999998887766666555544 1111100000
Q ss_pred Cc-----------------------------------------------------------------------------c
Q 043041 156 TS-----------------------------------------------------------------------------E 158 (395)
Q Consensus 156 ~~-----------------------------------------------------------------------------~ 158 (395)
.. .
T Consensus 190 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~ 269 (570)
T 2z63_A 190 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269 (570)
T ss_dssp CEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTE
T ss_pred eecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchh
Confidence 00 0
Q ss_pred --------ccccC--------CccccCCC---------------------------------------------Cccccc
Q 043041 159 --------YWFAG--------GLQLTTAG---------------------------------------------DFFSGQ 177 (395)
Q Consensus 159 --------~~~~~--------~~~~~~~~---------------------------------------------~~~~~~ 177 (395)
+.... ...+...+ ......
T Consensus 270 ~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L 349 (570)
T 2z63_A 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL 349 (570)
T ss_dssp EESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTC
T ss_pred hhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCC
Confidence 00000 00000000 000000
Q ss_pred eEEEe--------------------------ec----cccccccccCcccEEECcCCCCccCCC-hhhhcCcCCCEEeCC
Q 043041 178 AVLTW--------------------------KG----SQYQYQNTLGLVKMLDLSSNKLGGEVP-EEIMDLVGLIAMNLS 226 (395)
Q Consensus 178 ~~~~~--------------------------~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls 226 (395)
..+.+ .+ ..+..+..+++|+.|++++|.+.+..| ..+..+++|+.|+++
T Consensus 350 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 429 (570)
T 2z63_A 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429 (570)
T ss_dssp CEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECT
T ss_pred CEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCc
Confidence 00000 00 011113455667777777777765544 467788888888888
Q ss_pred CCcCcccCCcccCCCCCCCEEECcCCccC-ccCcccccCCCCCCEEeCcCCcCcccCCCC-cccCccccccccCCCCCCC
Q 043041 227 RNNLTGQITPKIGQLKSLDFLDLSRNRFF-GGIPSSLSLLSGLSVMDLSYNNLSGKIPSG-TQLQSFNASTYAGNELCGL 304 (395)
Q Consensus 227 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~l~~l~~~~~~gN~lc~~ 304 (395)
+|.+++..|..+..+++|+.|++++|.++ +.+|..+..+++|+.|++++|++++..|.. ..+.+++.+++.+|.+.+.
T Consensus 430 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 509 (570)
T 2z63_A 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509 (570)
T ss_dssp TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCC
Confidence 88888778888888888888888888887 567778888888888888888888876654 5677778888888876665
Q ss_pred C
Q 043041 305 P 305 (395)
Q Consensus 305 ~ 305 (395)
+
T Consensus 510 ~ 510 (570)
T 2z63_A 510 P 510 (570)
T ss_dssp C
T ss_pred C
Confidence 4
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=1.3e-30 Score=246.27 Aligned_cols=283 Identities=18% Similarity=0.181 Sum_probs=204.6
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++|+|++|.+++..+..|..+++|++|+|++|++++..|..|+++++|++|+|++|.++...+..|.++++|++|++++|
T Consensus 72 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n 151 (390)
T 3o6n_A 72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 151 (390)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCC
Confidence 57999999999888889999999999999999999888889999999999999999999655556799999999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCC-cccc---------------cccc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIP-KCFN---------------NFTA 144 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~---------------~l~~ 144 (395)
.++ .++...+..+++|++|++++|++++.. +..+++|++|++++|.+++... ..+. ..++
T Consensus 152 ~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 227 (390)
T 3o6n_A 152 NLE-RIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 227 (390)
T ss_dssp CCC-BCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSS
T ss_pred ccC-ccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEEECCCCeeeecccccccc
Confidence 998 555554447999999999999998652 4455666666666665543210 0000 0112
Q ss_pred chhccccccccCccccccCCccccCCCCccccceEEEe-----eccccccccccCcccEEECcCCCCccCCChhhhcCcC
Q 043041 145 MAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTW-----KGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVG 219 (395)
Q Consensus 145 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 219 (395)
|+.+............. ........+.+ .+..+..+..+++|+.|++++|++++ +|..+..+++
T Consensus 228 L~~L~l~~n~l~~~~~l----------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~ 296 (390)
T 3o6n_A 228 LTILKLQHNNLTDTAWL----------LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPT 296 (390)
T ss_dssp CCEEECCSSCCCCCGGG----------GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTT
T ss_pred ccEEECCCCCCcccHHH----------cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCC
Confidence 22222211111110000 00111222222 22234567789999999999999994 5667788999
Q ss_pred CCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCCcccCccccccccCC
Q 043041 220 LIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSGTQLQSFNASTYAGN 299 (395)
Q Consensus 220 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~l~~l~~~~~~gN 299 (395)
|+.|+|++|+++ .+|..+..+++|+.|++++|++++. + +..+++|+.|++++|++++.... ..+..+....+.++
T Consensus 297 L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~ 371 (390)
T 3o6n_A 297 LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDA 371 (390)
T ss_dssp CCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCC
T ss_pred CCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhccccc
Confidence 999999999998 6777888999999999999999854 3 67889999999999999975322 23444444455555
Q ss_pred -CCCC
Q 043041 300 -ELCG 303 (395)
Q Consensus 300 -~lc~ 303 (395)
..|.
T Consensus 372 ~~~c~ 376 (390)
T 3o6n_A 372 DQHCK 376 (390)
T ss_dssp CSCCC
T ss_pred Cceec
Confidence 4454
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=2e-30 Score=256.62 Aligned_cols=104 Identities=25% Similarity=0.272 Sum_probs=85.5
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++|||++|.+++..|..|.++++|++|+|++|++++..|++|+++++|++|+|++|.++ .+|.. .+++|++|++++|
T Consensus 55 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N 131 (562)
T 3a79_B 55 KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFN 131 (562)
T ss_dssp CEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSS
T ss_pred CEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCC
Confidence 57899999999777788999999999999999999888889999999999999999988 56655 7888889999888
Q ss_pred cccc-cCchhHhhcCCCccEEEccceeec
Q 043041 81 ALSG-EIPKWIGESLPKLIVLSLMSNKFH 108 (395)
Q Consensus 81 ~l~~-~ip~~~~~~l~~L~~L~L~~n~l~ 108 (395)
.+++ .+|..+. .+++|++|++++|+++
T Consensus 132 ~l~~l~~p~~~~-~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 132 DFDVLPVCKEFG-NLTKLTFLGLSAAKFR 159 (562)
T ss_dssp CCSBCCCCGGGG-GCTTCCEEEEECSBCC
T ss_pred CccccCchHhhc-ccCcccEEecCCCccc
Confidence 8873 2345555 5888888888877764
No 41
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.6e-31 Score=249.22 Aligned_cols=268 Identities=20% Similarity=0.197 Sum_probs=126.8
Q ss_pred EEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcc
Q 043041 3 LDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNAL 82 (395)
Q Consensus 3 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l 82 (395)
.|+++|.++ .+|..+. ++|+.|++++|++++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+
T Consensus 36 c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 36 CKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp EECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 345555555 4444433 3555556655555544444555555566666655555555555555555566666655555
Q ss_pred cccCchhHhhcCCCccEEEccceeeccccC-ccCCCCCCccEEEcccC-CCCCCCCccccccccchhccccccccCcccc
Q 043041 83 SGEIPKWIGESLPKLIVLSLMSNKFHGIIP-FQLCYLPFIQILDLSSN-NIPGIIPKCFNNFTAMAQEKSSVLSVTSEYW 160 (395)
Q Consensus 83 ~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 160 (395)
+ .+|...+..+++|++|++++|++++..+ ..+..+++|++|++++| .+.+..+..+..+++|+.+............
T Consensus 113 ~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 113 S-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp S-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred C-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 5 4554433345555566665555553322 24555555555555555 3444444555555555544432221110000
Q ss_pred ccCCccccCCCCccccceEEEeecc-----ccccccccCcccEEECcCCCCccCCChhhh---cCcCCCEEeCCCCcCcc
Q 043041 161 FAGGLQLTTAGDFFSGQAVLTWKGS-----QYQYQNTLGLVKMLDLSSNKLGGEVPEEIM---DLVGLIAMNLSRNNLTG 232 (395)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~ 232 (395)
.. -........+.+.+. .......+++|+.|++++|.+++..+..+. ..+.++.++++++.+++
T Consensus 192 ~~--------l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~ 263 (353)
T 2z80_A 192 KS--------LKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263 (353)
T ss_dssp TT--------TTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred HH--------HhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC
Confidence 00 000000000000000 001112244455555555555443332221 23344444444444443
Q ss_pred ----cCCcccCCCCCCCEEECcCCccCccCccc-ccCCCCCCEEeCcCCcCcccCC
Q 043041 233 ----QITPKIGQLKSLDFLDLSRNRFFGGIPSS-LSLLSGLSVMDLSYNNLSGKIP 283 (395)
Q Consensus 233 ----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p 283 (395)
.+|..+..+++|+.|++++|+++ .+|.. +..+++|+.|++++|+++|.+|
T Consensus 264 ~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 264 ESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 24555566666666666666666 33333 4666666666666666666554
No 42
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=2.8e-30 Score=261.41 Aligned_cols=277 Identities=19% Similarity=0.185 Sum_probs=173.2
Q ss_pred EEEccCCcccccCCCCccCCCCCCEEECCCCcccc--cCCCCCCCC--CCccEEecccccCcccCchhccCCCCCCEEEC
Q 043041 2 YLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSG--KIPDSMGSL--PNIQILSLHNNSLTGELPSSLQNCSLLILMDL 77 (395)
Q Consensus 2 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 77 (395)
+|++++|.+++..|..|.++++|+.|++++|.+.. ..+..|..+ +.|+.|++++|++++..|..|..+++|++|++
T Consensus 333 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 412 (680)
T 1ziw_A 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 412 (680)
T ss_dssp EEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred EEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeC
Confidence 34455555554444444555555555555444321 111222221 34555555555555555556666666666666
Q ss_pred CCCcccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCC--CCCCccccccccchhcccccccc
Q 043041 78 GRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIP--GIIPKCFNNFTAMAQEKSSVLSV 155 (395)
Q Consensus 78 s~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~l~~~~~~~ 155 (395)
++|.+.+.+|...+.++++|++|++++|++.+..+..+..+++|++|++++|.+. +..|..+..+++|+.+.......
T Consensus 413 ~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l 492 (680)
T 1ziw_A 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492 (680)
T ss_dssp CSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCC
T ss_pred CCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCC
Confidence 6666655555444445666666666666666555566666666666666666654 34555555555555554322211
Q ss_pred CccccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCC--------hhhhcCcCCCEEeCCC
Q 043041 156 TSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVP--------EEIMDLVGLIAMNLSR 227 (395)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p--------~~~~~l~~L~~L~Ls~ 227 (395)
.+..+..+..+++|+.|++++|++++..+ ..+..+++|+.|+|++
T Consensus 493 ---------------------------~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 545 (680)
T 1ziw_A 493 ---------------------------ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545 (680)
T ss_dssp ---------------------------CCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS
T ss_pred ---------------------------CcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC
Confidence 11122335667888999999998875422 2367888999999999
Q ss_pred CcCcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCC-c-ccCccccccccCC-CCCCC
Q 043041 228 NNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSG-T-QLQSFNASTYAGN-ELCGL 304 (395)
Q Consensus 228 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~-~l~~l~~~~~~gN-~lc~~ 304 (395)
|+++...+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++++..|.. . .+.++..+++.+| ..|.+
T Consensus 546 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 546 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred CCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 9998544556888999999999999998766667788899999999999998776653 2 5677888888888 66654
Q ss_pred C
Q 043041 305 P 305 (395)
Q Consensus 305 ~ 305 (395)
+
T Consensus 626 ~ 626 (680)
T 1ziw_A 626 E 626 (680)
T ss_dssp C
T ss_pred c
Confidence 3
No 43
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=1.5e-30 Score=263.43 Aligned_cols=299 Identities=20% Similarity=0.170 Sum_probs=174.6
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++|||++|.+++..+..|.++++|++|+|++|.+++..|.+|+++++|++|+|++|.+++..+..|.++++|++|++++|
T Consensus 28 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n 107 (680)
T 1ziw_A 28 TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107 (680)
T ss_dssp SEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred cEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCC
Confidence 35666666666555556666666777777666666666666666666777777666666444445666666777777666
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCcccc--ccccchhccccccccCcc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFN--NFTAMAQEKSSVLSVTSE 158 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~l~~~~~~~~~~ 158 (395)
.++ .+|...+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+. .+++|+.+..........
T Consensus 108 ~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 186 (680)
T 1ziw_A 108 SIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF 186 (680)
T ss_dssp CCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCB
T ss_pred ccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccccc
Confidence 666 44433233566677777776666666666666666666676666666665555443 234555554332221111
Q ss_pred ccc--cCCccccC---CCC--------------ccccceEEEe-----eccccccccccC--cccEEECcCCCCccCCCh
Q 043041 159 YWF--AGGLQLTT---AGD--------------FFSGQAVLTW-----KGSQYQYQNTLG--LVKMLDLSSNKLGGEVPE 212 (395)
Q Consensus 159 ~~~--~~~~~~~~---~~~--------------~~~~~~~~~~-----~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~p~ 212 (395)
... .....+.. ... .......+.+ .+..+..+..++ +|+.|++++|.+++..|.
T Consensus 187 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~ 266 (680)
T 1ziw_A 187 SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND 266 (680)
T ss_dssp CTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTT
T ss_pred ChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcc
Confidence 000 00000000 000 0001111111 111222333443 377777777777766667
Q ss_pred hhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCc-----cCcc----cccCCCCCCEEeCcCCcCcccCC
Q 043041 213 EIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFG-----GIPS----SLSLLSGLSVMDLSYNNLSGKIP 283 (395)
Q Consensus 213 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-----~~p~----~l~~l~~L~~L~Ls~N~l~~~~p 283 (395)
.+..+++|+.|++++|.+++..|..+..+++|+.|++++|...+ .+|. .+..+++|+.|++++|++++..|
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~ 346 (680)
T 1ziw_A 267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS 346 (680)
T ss_dssp TTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCT
T ss_pred cccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCCh
Confidence 77777777777777777777777777777777777777665443 2222 56677788888888888877665
Q ss_pred CC-cccCccccccccCCC
Q 043041 284 SG-TQLQSFNASTYAGNE 300 (395)
Q Consensus 284 ~~-~~l~~l~~~~~~gN~ 300 (395)
.. ..+..++.+++.+|.
T Consensus 347 ~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 347 NMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp TTTTTCTTCCEEECTTCB
T ss_pred hHhccccCCcEEECCCCc
Confidence 43 556677777777774
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=3e-30 Score=256.97 Aligned_cols=290 Identities=18% Similarity=0.155 Sum_probs=211.6
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++|+|++|.+++..|..|..+++|+.|+|++|.+++..|..|+++++|++|+|++|.+++..+..|.++++|++|++++|
T Consensus 78 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N 157 (597)
T 3oja_B 78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 157 (597)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC
Confidence 57999999999888889999999999999999999988889999999999999999999766667899999999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCcccc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYW 160 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 160 (395)
.+++..|..+. .+++|++|++++|.+++.. +..+++|+.|++++|.+++.. ....|+.+............
T Consensus 158 ~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~-----~~~~L~~L~ls~n~l~~~~~ 228 (597)
T 3oja_B 158 NLERIEDDTFQ-ATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVVRG 228 (597)
T ss_dssp CCCBCCTTTTT-TCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEE-----CCTTCSEEECCSSCCCEEEC
T ss_pred cCCCCChhhhh-cCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccccc-----CCchhheeeccCCccccccc
Confidence 99954444554 6999999999999998653 444566666666666665421 11122222211111000000
Q ss_pred c---------cCCccccCCC--CccccceEEEe-----eccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEe
Q 043041 161 F---------AGGLQLTTAG--DFFSGQAVLTW-----KGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMN 224 (395)
Q Consensus 161 ~---------~~~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 224 (395)
. ...+.+.... ........+.+ .+..+..+..+++|+.|+|++|.+++ +|..+..+++|+.|+
T Consensus 229 ~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~ 307 (597)
T 3oja_B 229 PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLD 307 (597)
T ss_dssp SCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEE
T ss_pred ccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEE
Confidence 0 0000011000 00111222222 23345567889999999999999995 577778899999999
Q ss_pred CCCCcCcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCCcccCccccccccCC-CCCC
Q 043041 225 LSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSGTQLQSFNASTYAGN-ELCG 303 (395)
Q Consensus 225 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~l~~l~~~~~~gN-~lc~ 303 (395)
|++|.++ .+|..+..+++|+.|+|++|.+++. | +..+++|+.|++++|+++|..+. ..+..+....+.++ ..|+
T Consensus 308 Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~ 382 (597)
T 3oja_B 308 LSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCK 382 (597)
T ss_dssp CCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCC
T ss_pred CCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCC
Confidence 9999999 7888889999999999999999854 3 67889999999999999986433 34555666667777 7787
Q ss_pred CC
Q 043041 304 LP 305 (395)
Q Consensus 304 ~~ 305 (395)
.+
T Consensus 383 ~~ 384 (597)
T 3oja_B 383 ID 384 (597)
T ss_dssp TT
T ss_pred cc
Confidence 53
No 45
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.1e-31 Score=274.31 Aligned_cols=270 Identities=20% Similarity=0.258 Sum_probs=224.8
Q ss_pred EEEccCCcccccCCCCccCCCCCCEEEC-CCCccccc-------------------------------------------
Q 043041 2 YLDLSNNLLSGRLPDCWPLFDRLRILDL-ANNNFSGK------------------------------------------- 37 (395)
Q Consensus 2 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L-s~n~l~~~------------------------------------------- 37 (395)
.|+|++|.++|.+|.+++++++|+.|+| ++|.++|.
T Consensus 327 ~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~ 406 (876)
T 4ecn_A 327 GLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406 (876)
T ss_dssp EEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred EEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHH
Confidence 6899999999999999999999999999 77765544
Q ss_pred ---------------------------------CCCCCCCCCCccEEecccccCcc-----------------cCchhcc
Q 043041 38 ---------------------------------IPDSMGSLPNIQILSLHNNSLTG-----------------ELPSSLQ 67 (395)
Q Consensus 38 ---------------------------------~p~~~~~l~~L~~L~L~~n~l~~-----------------~~p~~~~ 67 (395)
+|..|+++++|++|+|++|.+++ .+|..++
T Consensus 407 ~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~ 486 (876)
T 4ecn_A 407 AINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS 486 (876)
T ss_dssp HHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred HhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhh
Confidence 78889999999999999999997 3888877
Q ss_pred --CCCCCCEEECCCCcccccCchhHhhcCCCccEEEcccee-ecc-ccCccCCC-------CCCccEEEcccCCCCCCCC
Q 043041 68 --NCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNK-FHG-IIPFQLCY-------LPFIQILDLSSNNIPGIIP 136 (395)
Q Consensus 68 --~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~-l~~-~~p~~l~~-------l~~L~~L~l~~n~l~~~~~ 136 (395)
++++|++|++++|.+.+.+|..+. .+++|++|++++|+ +++ .+|..++. +++|++|++++|.++ .+|
T Consensus 487 f~~L~~L~~L~Ls~N~l~~~iP~~l~-~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip 564 (876)
T 4ecn_A 487 WSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFP 564 (876)
T ss_dssp GGGCTTCCEEEEESCTTCCSCCGGGG-GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCC
T ss_pred hccCCCCCEEECcCCCCCccChHHHh-CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccC
Confidence 999999999999999889998887 59999999999998 887 77765554 459999999999999 677
Q ss_pred c--cccccccchhccccccccCccccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhh
Q 043041 137 K--CFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEI 214 (395)
Q Consensus 137 ~--~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 214 (395)
. .+..+++|+.+........ .++ .+..+++|+.|++++|.++ .+|..+
T Consensus 565 ~~~~l~~L~~L~~L~Ls~N~l~----------------------------~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l 614 (876)
T 4ecn_A 565 ASASLQKMVKLGLLDCVHNKVR----------------------------HLE-AFGTNVKLTDLKLDYNQIE-EIPEDF 614 (876)
T ss_dssp CHHHHTTCTTCCEEECTTSCCC----------------------------BCC-CCCTTSEESEEECCSSCCS-CCCTTS
T ss_pred ChhhhhcCCCCCEEECCCCCcc----------------------------cch-hhcCCCcceEEECcCCccc-cchHHH
Confidence 7 8888888887765333221 112 4567889999999999999 899899
Q ss_pred hcCcC-CCEEeCCCCcCcccCCcccCCCCC--CCEEECcCCccCccCcccc---c--CCCCCCEEeCcCCcCcccCCCC-
Q 043041 215 MDLVG-LIAMNLSRNNLTGQITPKIGQLKS--LDFLDLSRNRFFGGIPSSL---S--LLSGLSVMDLSYNNLSGKIPSG- 285 (395)
Q Consensus 215 ~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~Ls~N~l~~~~p~~l---~--~l~~L~~L~Ls~N~l~~~~p~~- 285 (395)
..+++ |+.|+|++|.++ .+|..+..++. |+.|+|++|++++.+|... . .+++|+.|++++|+++ .+|..
T Consensus 615 ~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~ 692 (876)
T 4ecn_A 615 CAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTEL 692 (876)
T ss_dssp CEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHH
T ss_pred hhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHH
Confidence 99999 999999999999 88888887765 9999999999998776432 2 3458999999999999 56654
Q ss_pred -cccCccccccccCCCCCCCC
Q 043041 286 -TQLQSFNASTYAGNELCGLP 305 (395)
Q Consensus 286 -~~l~~l~~~~~~gN~lc~~~ 305 (395)
..+..+..+++++|.+...|
T Consensus 693 ~~~l~~L~~L~Ls~N~L~~ip 713 (876)
T 4ecn_A 693 FATGSPISTIILSNNLMTSIP 713 (876)
T ss_dssp HHTTCCCSEEECCSCCCSCCC
T ss_pred HccCCCCCEEECCCCcCCccC
Confidence 25778889999999776544
No 46
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=9.4e-31 Score=236.66 Aligned_cols=232 Identities=22% Similarity=0.249 Sum_probs=199.5
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEeccccc-CcccCchhccCCCCCCEEECCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNS-LTGELPSSLQNCSLLILMDLGR 79 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~ls~ 79 (395)
++|++++|.+++..+..|..+++|+.|++++|.+++..|..|+++++|++|++++|. ++...|..+..+++|++|++++
T Consensus 35 ~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~ 114 (285)
T 1ozn_A 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114 (285)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTT
T ss_pred eEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCC
Confidence 579999999998888889999999999999999998889999999999999999997 8877788999999999999999
Q ss_pred CcccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccc
Q 043041 80 NALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEY 159 (395)
Q Consensus 80 n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 159 (395)
|.++ .++...+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..
T Consensus 115 n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------ 175 (285)
T 1ozn_A 115 CGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG------------------ 175 (285)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT------------------
T ss_pred CcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcC------------------
Confidence 9999 554444447999999999999999887788999999999999999998766555544
Q ss_pred cccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccC
Q 043041 160 WFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIG 239 (395)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 239 (395)
+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..+.
T Consensus 176 ---------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 222 (285)
T 1ozn_A 176 ---------------------------------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222 (285)
T ss_dssp ---------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHT
T ss_pred ---------------------------------ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcc
Confidence 44569999999999988899999999999999999999987777899
Q ss_pred CCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCC
Q 043041 240 QLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSG 285 (395)
Q Consensus 240 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 285 (395)
.+++|+.|++++|.+....+.. .-...++.+..+.+.+.+..|..
T Consensus 223 ~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 223 PLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp TCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred cCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 9999999999999998543321 11123455567788898888864
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=9.3e-31 Score=244.02 Aligned_cols=254 Identities=20% Similarity=0.226 Sum_probs=179.9
Q ss_pred cCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCCCcc
Q 043041 19 PLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLI 98 (395)
Q Consensus 19 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~ 98 (395)
..++.....+++++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.++ .++...+..+++|+
T Consensus 28 ~~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLE 103 (353)
T ss_dssp CEECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCC
T ss_pred CCCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCC
Confidence 44667778999999998 5777665 58999999999999777778999999999999999999 55444344699999
Q ss_pred EEEccceeeccccCccCCCCCCccEEEcccCCCCCCCC-ccccccccchhccccccccCccccccCCccccCCCCccccc
Q 043041 99 VLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIP-KCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQ 177 (395)
Q Consensus 99 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (395)
+|++++|++++..+..+..+++|++|++++|.+++..+ ..+..+++|+.+...........
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~------------------ 165 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI------------------ 165 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE------------------
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccccc------------------
Confidence 99999999997666668999999999999999997665 57888999988775433111100
Q ss_pred eEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCc-
Q 043041 178 AVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFG- 256 (395)
Q Consensus 178 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~- 256 (395)
.+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+++
T Consensus 166 --------~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 237 (353)
T 2z80_A 166 --------QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF 237 (353)
T ss_dssp --------CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTC
T ss_pred --------CHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccc
Confidence 01122334455555555555555445555555555555555555542222223334555555555555543
Q ss_pred ------------------------------cCcccccCCCCCCEEeCcCCcCcccCCCC--cccCccccccccCC-CCCC
Q 043041 257 ------------------------------GIPSSLSLLSGLSVMDLSYNNLSGKIPSG--TQLQSFNASTYAGN-ELCG 303 (395)
Q Consensus 257 ------------------------------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~--~~l~~l~~~~~~gN-~lc~ 303 (395)
.+|..+..+++|+.|++++|+++ .+|.. ..+++++.+++.+| ..|.
T Consensus 238 ~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 238 HFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 25666788999999999999999 45543 57888899999999 4443
No 48
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=3.1e-30 Score=254.55 Aligned_cols=132 Identities=20% Similarity=0.190 Sum_probs=114.1
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcc-cCchhccCCCCCCEEECCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTG-ELPSSLQNCSLLILMDLGR 79 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~ls~ 79 (395)
++|+|++|++++..|+.|.++++|++|+|++|++++..|..|+++++|++|++++|.+++ ..|..+.++++|++|++++
T Consensus 53 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~ 132 (549)
T 2z81_A 53 QVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132 (549)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEE
T ss_pred cEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCC
Confidence 589999999999888999999999999999999998877789999999999999999986 3577899999999999999
Q ss_pred CcccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCC
Q 043041 80 NALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIP 132 (395)
Q Consensus 80 n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 132 (395)
|.+.+.+|...+..+++|++|++++|++++..|..+..+++|++|+++.|.+.
T Consensus 133 n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 133 VETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp SSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 99655888655557999999999999999988888877666665555555543
No 49
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=7e-29 Score=230.71 Aligned_cols=273 Identities=18% Similarity=0.242 Sum_probs=157.9
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++|++++|.++ .+|. +..+++|++|++++|++++. +. +..+++|++|++++|.+++ ++ .+.++++|++|++++|
T Consensus 47 ~~L~l~~~~i~-~~~~-~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n 120 (347)
T 4fmz_A 47 TKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNED 120 (347)
T ss_dssp SEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTS
T ss_pred cEEEEeCCccc-cchh-hhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCC
Confidence 46888999887 4554 88889999999999988854 33 8888999999999998884 44 5888899999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCcccc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYW 160 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 160 (395)
.+. .++. +. .+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|+.+............
T Consensus 121 ~i~-~~~~-~~-~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~ 194 (347)
T 4fmz_A 121 NIS-DISP-LA-NLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP 194 (347)
T ss_dssp CCC-CCGG-GT-TCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG
T ss_pred ccc-Cchh-hc-cCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc
Confidence 888 6665 33 58888888888886554443 37888888888888888876544 6667777766654433222111
Q ss_pred ccCCccccCCCCccccceEEEeeccc---cccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcc
Q 043041 161 FAGGLQLTTAGDFFSGQAVLTWKGSQ---YQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPK 237 (395)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 237 (395)
... ......+...+.. ...+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++. +.
T Consensus 195 ~~~----------l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~ 260 (347)
T 4fmz_A 195 LAS----------LTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NA 260 (347)
T ss_dssp GGG----------CTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GG
T ss_pred ccC----------CCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hh
Confidence 000 0000011110000 0013344445555555555542222 44445555555555544421 23
Q ss_pred cCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCC-cccCccccccccCCCC
Q 043041 238 IGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSG-TQLQSFNASTYAGNEL 301 (395)
Q Consensus 238 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~l~~l~~~~~~gN~l 301 (395)
+..+++|+.|++++|++++. ..+..+++|+.|++++|++++..|.. ..+++++.+++.+|.+
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred HhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc
Confidence 44444455555555444432 22444444445555544444433322 2334444444444433
No 50
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.96 E-value=8.4e-29 Score=222.75 Aligned_cols=229 Identities=22% Similarity=0.198 Sum_probs=195.1
Q ss_pred EEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCc
Q 043041 2 YLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNA 81 (395)
Q Consensus 2 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~ 81 (395)
.++.++.+++ .+|..+. ++|+.|++++|++++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 3566677776 6777665 689999999999998888899999999999999999998878889999999999999999
Q ss_pred ccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCC-CCccccccccchhccccccccCcccc
Q 043041 82 LSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGI-IPKCFNNFTAMAQEKSSVLSVTSEYW 160 (395)
Q Consensus 82 l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~l~~~~~~~~~~~~ 160 (395)
++ .++...+..+++|++|++++|++.+..+..+..+++|++|++++|.+.+. +|..+..
T Consensus 88 l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~------------------- 147 (276)
T 2z62_A 88 IQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN------------------- 147 (276)
T ss_dssp CC-EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-------------------
T ss_pred cC-ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhcc-------------------
Confidence 99 55544444799999999999999988777899999999999999999864 3555543
Q ss_pred ccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCC----EEeCCCCcCcccCCc
Q 043041 161 FAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLI----AMNLSRNNLTGQITP 236 (395)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~----~L~Ls~N~l~~~~p~ 236 (395)
+++|+.|++++|++++..+..+..+++|+ .|++++|.+++..+.
T Consensus 148 --------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~ 195 (276)
T 2z62_A 148 --------------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195 (276)
T ss_dssp --------------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTT
T ss_pred --------------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcc
Confidence 45569999999999988888888888887 899999999966555
Q ss_pred ccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCCc
Q 043041 237 KIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSGT 286 (395)
Q Consensus 237 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 286 (395)
.+. ..+|+.|++++|++++..+..+..+++|+.|++++|++++.+|...
T Consensus 196 ~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~ 244 (276)
T 2z62_A 196 AFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 244 (276)
T ss_dssp SSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred ccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchH
Confidence 554 4589999999999997777778999999999999999999887653
No 51
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=7e-31 Score=240.57 Aligned_cols=242 Identities=25% Similarity=0.304 Sum_probs=169.0
Q ss_pred EEccCCcccccCCCCccCCCCCCEEECCCCccc-ccCCCCCC-------CCCCccEEecccccCcccCchhc--cCCCCC
Q 043041 3 LDLSNNLLSGRLPDCWPLFDRLRILDLANNNFS-GKIPDSMG-------SLPNIQILSLHNNSLTGELPSSL--QNCSLL 72 (395)
Q Consensus 3 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~-------~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L 72 (395)
|++++|.+ .+|..+... |+.|+|++|+++ +.+|..+. ++++|++|+|++|.+++.+|..+ ..+++|
T Consensus 48 l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L 123 (312)
T 1wwl_A 48 LLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDL 123 (312)
T ss_dssp HHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCC
T ss_pred Eeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCc
Confidence 45566666 455544433 667777777773 44555444 56777777777777776667665 677777
Q ss_pred CEEECCCCcccccCchhHhhcC-----CCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCC--Cccccccccc
Q 043041 73 ILMDLGRNALSGEIPKWIGESL-----PKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGII--PKCFNNFTAM 145 (395)
Q Consensus 73 ~~L~ls~n~l~~~ip~~~~~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L 145 (395)
++|++++|.+++ +|..+. .+ ++|++|++++|++.+..|..++.+++|++|++++|++.+.. +..+
T Consensus 124 ~~L~Ls~N~l~~-~~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------ 195 (312)
T 1wwl_A 124 NILNLRNVSWAT-RDAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL------ 195 (312)
T ss_dssp SEEEEESCBCSS-SSSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS------
T ss_pred cEEEccCCCCcc-hhHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH------
Confidence 777777777773 365554 24 77777777777777666677777777777777777765431 1111
Q ss_pred hhccccccccCccccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCcc--CCC-hhhhcCcCCCE
Q 043041 146 AQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGG--EVP-EEIMDLVGLIA 222 (395)
Q Consensus 146 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p-~~~~~l~~L~~ 222 (395)
.+..+++|++|++++|++++ .++ ..+..+++|+.
T Consensus 196 -------------------------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~ 232 (312)
T 1wwl_A 196 -------------------------------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQG 232 (312)
T ss_dssp -------------------------------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSE
T ss_pred -------------------------------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCE
Confidence 01345677889999998883 222 33457789999
Q ss_pred EeCCCCcCcccCC-cccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCCcccCccccccccCCCC
Q 043041 223 MNLSRNNLTGQIT-PKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSGTQLQSFNASTYAGNEL 301 (395)
Q Consensus 223 L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~l~~l~~~~~~gN~l 301 (395)
|++++|.+++.+| ..+..+++|+.|+|++|+++ .+|..+. ++|+.|++++|++++. |....+++++.+++.+|.+
T Consensus 233 L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 233 LDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPF 308 (312)
T ss_dssp EECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTT
T ss_pred EECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCC
Confidence 9999999987765 45667889999999999988 6777665 7889999999999876 6667788888888888866
Q ss_pred CC
Q 043041 302 CG 303 (395)
Q Consensus 302 c~ 303 (395)
.+
T Consensus 309 ~~ 310 (312)
T 1wwl_A 309 LD 310 (312)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 52
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=8.9e-29 Score=248.04 Aligned_cols=110 Identities=21% Similarity=0.266 Sum_probs=97.0
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++|||++|+|+++.|++|.++++|++|+|++|++++..+..|+++++|++|+|++|++++..+..|+++++|++|++++|
T Consensus 79 ~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N 158 (635)
T 4g8a_A 79 QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 158 (635)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC
Confidence 58999999999888889999999999999999999877788999999999999999999877778999999999999999
Q ss_pred cccc-cCchhHhhcCCCccEEEccceeecccc
Q 043041 81 ALSG-EIPKWIGESLPKLIVLSLMSNKFHGII 111 (395)
Q Consensus 81 ~l~~-~ip~~~~~~l~~L~~L~L~~n~l~~~~ 111 (395)
.+++ .+|..+. .+++|++|++++|++++..
T Consensus 159 ~l~~~~~~~~~~-~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 159 LIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp CCCCCCCCGGGG-GCTTCCEEECCSSCCCEEC
T ss_pred ccccCCCchhhc-cchhhhhhcccCccccccc
Confidence 9974 3456555 6999999999998876543
No 53
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=3.5e-28 Score=235.08 Aligned_cols=285 Identities=22% Similarity=0.277 Sum_probs=160.1
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
+.|+++++.++ .+|. +..+++|++|+|++|.+++..+ ++++++|++|++++|.+++..+ +.++++|++|++++|
T Consensus 49 ~~L~l~~~~i~-~l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n 122 (466)
T 1o6v_A 49 TTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 122 (466)
T ss_dssp CEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred cEEecCCCCCc-cCcc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC
Confidence 45777777776 3553 6777788888888887775433 7777778888888777775443 777777888888777
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccccC-------------------ccCCCCCCccEEEcccCCCCCCCCccccc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIP-------------------FQLCYLPFIQILDLSSNNIPGIIPKCFNN 141 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p-------------------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 141 (395)
.++ .++. +. .+++|++|++++|.+.+... ..+..+++|++|++++|.+.+. ..+..
T Consensus 123 ~l~-~~~~-~~-~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~ 197 (466)
T 1o6v_A 123 QIT-DIDP-LK-NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAK 197 (466)
T ss_dssp CCC-CCGG-GT-TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGG
T ss_pred CCC-CChH-Hc-CCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhcc
Confidence 777 5554 33 57777777777777664211 1256778888888888888764 34667
Q ss_pred cccchhccccccccCccccccC----------CccccCCC--CccccceEEEeeccc---cccccccCcccEEECcCCCC
Q 043041 142 FTAMAQEKSSVLSVTSEYWFAG----------GLQLTTAG--DFFSGQAVLTWKGSQ---YQYQNTLGLVKMLDLSSNKL 206 (395)
Q Consensus 142 l~~L~~l~~~~~~~~~~~~~~~----------~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~l~~L~~L~Ls~n~l 206 (395)
+++|+.+............... .+.+.... ........+.+.+.. ...+..+++|+.|++++|.+
T Consensus 198 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l 277 (466)
T 1o6v_A 198 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI 277 (466)
T ss_dssp CTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCC
T ss_pred CCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCcc
Confidence 7777776654433322111000 00000000 000111111111110 01134445555555555555
Q ss_pred ccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCCc
Q 043041 207 GGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSGT 286 (395)
Q Consensus 207 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 286 (395)
++..+ +..+++|+.|++++|.+++..| ++.+++|+.|++++|++++..| +..+++|+.|++++|++++. +...
T Consensus 278 ~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~ 350 (466)
T 1o6v_A 278 SNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-SSLA 350 (466)
T ss_dssp CCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-GGGT
T ss_pred Ccccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-hhhc
Confidence 53322 4555555555555555554332 4555666666666666654443 45556666666666666543 3334
Q ss_pred ccCccccccccCCCCCC
Q 043041 287 QLQSFNASTYAGNELCG 303 (395)
Q Consensus 287 ~l~~l~~~~~~gN~lc~ 303 (395)
.+.++..+++.+|.+.+
T Consensus 351 ~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 351 NLTNINWLSAGHNQISD 367 (466)
T ss_dssp TCTTCCEEECCSSCCCB
T ss_pred cCCCCCEEeCCCCccCc
Confidence 55556666666665444
No 54
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=8.1e-28 Score=223.53 Aligned_cols=274 Identities=20% Similarity=0.295 Sum_probs=214.9
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++|++++|.+++. +. +..+++|++|++++|.+++ + +++.++++|++|++++|.+++. +. +..+++|++|++++|
T Consensus 69 ~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n 142 (347)
T 4fmz_A 69 EYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGAN 142 (347)
T ss_dssp CEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTC
T ss_pred cEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCC
Confidence 5799999999854 43 8999999999999999985 3 3699999999999999999954 43 889999999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCcccc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYW 160 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 160 (395)
.....++. +. .+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.+............
T Consensus 143 ~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~ 216 (347)
T 4fmz_A 143 HNLSDLSP-LS-NMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP 216 (347)
T ss_dssp TTCCCCGG-GT-TCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG
T ss_pred CCcccccc-hh-hCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch
Confidence 76645554 44 69999999999999986544 8889999999999999987654 7777777776654433322111
Q ss_pred ccCCccccCCCCccccceEEEeeccc---cccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcc
Q 043041 161 FAGGLQLTTAGDFFSGQAVLTWKGSQ---YQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPK 237 (395)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 237 (395)
.. .......+.+.+.. ...+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++. +.
T Consensus 217 ~~----------~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~ 282 (347)
T 4fmz_A 217 VA----------NMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SV 282 (347)
T ss_dssp GG----------GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GG
T ss_pred hh----------cCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hh
Confidence 10 01111222222111 11267889999999999999853 4688999999999999999854 45
Q ss_pred cCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCCcccCccccccccCCCC
Q 043041 238 IGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSGTQLQSFNASTYAGNEL 301 (395)
Q Consensus 238 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~l~~l~~~~~~gN~l 301 (395)
+..+++|+.|++++|++++..|..+..+++|+.|++++|++++..| ...+..+..+++.+|.+
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 283 LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence 8899999999999999998888999999999999999999998777 66788889999998854
No 55
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=2.6e-30 Score=236.74 Aligned_cols=225 Identities=24% Similarity=0.234 Sum_probs=186.9
Q ss_pred EEEccCCcc-cccCCCCcc-------CCCCCCEEECCCCcccccCCCCC--CCCCCccEEecccccCcccCchhccCC--
Q 043041 2 YLDLSNNLL-SGRLPDCWP-------LFDRLRILDLANNNFSGKIPDSM--GSLPNIQILSLHNNSLTGELPSSLQNC-- 69 (395)
Q Consensus 2 ~L~Ls~n~l-~~~~p~~~~-------~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p~~~~~l-- 69 (395)
+|+|++|.+ .+.+|..+. ++++|++|+|++|++++.+|..+ +.+++|++|+|++|++++. |..+..+
T Consensus 67 ~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~ 145 (312)
T 1wwl_A 67 SLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQ 145 (312)
T ss_dssp HCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHT
T ss_pred hcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHH
Confidence 578999999 445676655 79999999999999999999887 8999999999999999976 8888877
Q ss_pred ---CCCCEEECCCCcccccCchhHhhcCCCccEEEccceeeccc--cCccC--CCCCCccEEEcccCCCCCCCCcccccc
Q 043041 70 ---SLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGI--IPFQL--CYLPFIQILDLSSNNIPGIIPKCFNNF 142 (395)
Q Consensus 70 ---~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~--~p~~l--~~l~~L~~L~l~~n~l~~~~~~~~~~l 142 (395)
++|++|++++|++.+..|..+. .+++|++|++++|++.+. .+..+ ..+++|++|++++|.+++... ..
T Consensus 146 ~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~--- 220 (312)
T 1wwl_A 146 WLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG-VC--- 220 (312)
T ss_dssp TCCTTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH-HH---
T ss_pred hhcCCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHH-HH---
Confidence 9999999999999944445554 699999999999998765 33344 889999999999999873211 00
Q ss_pred ccchhccccccccCccccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCC-hhhhcCcCCC
Q 043041 143 TAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVP-EEIMDLVGLI 221 (395)
Q Consensus 143 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~ 221 (395)
...+..+++|+.|++++|++++.+| ..+..+++|+
T Consensus 221 --------------------------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 256 (312)
T 1wwl_A 221 --------------------------------------------SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256 (312)
T ss_dssp --------------------------------------------HHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCC
T ss_pred --------------------------------------------HHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCC
Confidence 0012345678999999999998775 4567789999
Q ss_pred EEeCCCCcCcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCccc
Q 043041 222 AMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGK 281 (395)
Q Consensus 222 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 281 (395)
.|+|++|.++ .+|..+. ++|+.|||++|++++. |. +..+++|+.|++++|++++.
T Consensus 257 ~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 257 SLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp EEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred EEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 9999999999 7888776 8999999999999966 66 89999999999999999863
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.2e-29 Score=245.92 Aligned_cols=217 Identities=18% Similarity=0.190 Sum_probs=137.8
Q ss_pred CCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCCCccEE
Q 043041 21 FDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVL 100 (395)
Q Consensus 21 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L 100 (395)
+++|+.|+|++|.+++..|..|+.+++|++|+|++|.+++..| +..+++|++|++++|.++ .+|. .++|++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~-----~~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPSIETL 104 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE-----CTTCCEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC-----CCCcCEE
Confidence 3467777777777776666677777777777777777775544 667777777777777776 4442 3677777
Q ss_pred EccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccccccCCccccCCCCccccceEE
Q 043041 101 SLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVL 180 (395)
Q Consensus 101 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (395)
++++|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.+.........
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----------------------- 158 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT----------------------- 158 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE-----------------------
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC-----------------------
Confidence 7777777755543 34667777777777776666666555555444322111110
Q ss_pred Eeeccccccc-cccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCccCc
Q 043041 181 TWKGSQYQYQ-NTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIP 259 (395)
Q Consensus 181 ~~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 259 (395)
..+..+ ..+++|+.|+|++|.+++..+ ...+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.+++ +|
T Consensus 159 ----~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp 230 (487)
T 3oja_A 159 ----VNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IE 230 (487)
T ss_dssp ----EEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-EC
T ss_pred ----cChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cc
Confidence 011111 245566777777777775422 3347777777777777774 33446777777777777777774 56
Q ss_pred ccccCCCCCCEEeCcCCcCc
Q 043041 260 SSLSLLSGLSVMDLSYNNLS 279 (395)
Q Consensus 260 ~~l~~l~~L~~L~Ls~N~l~ 279 (395)
..+..+++|+.|++++|++.
T Consensus 231 ~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 231 KALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp TTCCCCTTCCEEECTTCCBC
T ss_pred hhhccCCCCCEEEcCCCCCc
Confidence 66677777777777777776
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=3.6e-30 Score=236.38 Aligned_cols=260 Identities=18% Similarity=0.191 Sum_probs=190.3
Q ss_pred EEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcc
Q 043041 3 LDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNAL 82 (395)
Q Consensus 3 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l 82 (395)
.+++.+.+....+..+..+++|+.|+|++|++++..|..|+.+++|++|+|++|.+++..+ +..+++|++|++++|.+
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc
Confidence 4566666654444555667788888888888887777788888888888888888886554 88888888888888888
Q ss_pred cccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCcccccc
Q 043041 83 SGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFA 162 (395)
Q Consensus 83 ~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~ 162 (395)
+ .+| ..++|++|++++|++++..+.. +++|++|++++|.+++..+..+..+++|+.+.........
T Consensus 93 ~-~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----- 158 (317)
T 3o53_A 93 Q-ELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT----- 158 (317)
T ss_dssp E-EEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE-----
T ss_pred c-ccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc-----
Confidence 7 555 2478888888888888665543 5778888888888888777777777777766643322211
Q ss_pred CCccccCCCCccccceEEEeeccccc-cccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCC
Q 043041 163 GGLQLTTAGDFFSGQAVLTWKGSQYQ-YQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQL 241 (395)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 241 (395)
..+. ....+++|++|++++|.+++. + ....+++|+.|+|++|.+++ +|..+..+
T Consensus 159 ----------------------~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l 213 (317)
T 3o53_A 159 ----------------------VNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSA 213 (317)
T ss_dssp ----------------------EEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGG
T ss_pred ----------------------ccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhccc
Confidence 0111 123567889999999999855 3 23358899999999999984 55558889
Q ss_pred CCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCc-ccCCCC-cccCccccccccCC-CCCCC
Q 043041 242 KSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLS-GKIPSG-TQLQSFNASTYAGN-ELCGL 304 (395)
Q Consensus 242 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~-~~l~~l~~~~~~gN-~lc~~ 304 (395)
++|+.|++++|+++ .+|..+..+++|+.|++++|+++ +.+|.. ..+..+..+++.++ .+.+.
T Consensus 214 ~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 214 AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp TTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred CcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 99999999999998 57777888999999999999998 444432 34555666666655 55543
No 58
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=8.9e-28 Score=232.18 Aligned_cols=289 Identities=24% Similarity=0.261 Sum_probs=194.7
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++|||++|.+++..| +.++++|++|++++|.+++..+ ++++++|++|++++|.+++..+ +.++++|++|++++|
T Consensus 71 ~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n 144 (466)
T 1o6v_A 71 TQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN 144 (466)
T ss_dssp CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEE
T ss_pred CEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCC
Confidence 468888888875544 7788888888888888775444 7777888888888877774432 667777777777777
Q ss_pred cccccCchh-------------------HhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccc
Q 043041 81 ALSGEIPKW-------------------IGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNN 141 (395)
Q Consensus 81 ~l~~~ip~~-------------------~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 141 (395)
.+. .++.. .+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+ ++.
T Consensus 145 ~l~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 219 (466)
T 1o6v_A 145 TIS-DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGI 219 (466)
T ss_dssp EEC-CCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGG
T ss_pred ccC-CChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccc
Confidence 665 33320 012456677777777776643 235666777777777777665544 444
Q ss_pred cccchhccccccccCcccccc----------CCccccCCC--CccccceEEEeeccc---cccccccCcccEEECcCCCC
Q 043041 142 FTAMAQEKSSVLSVTSEYWFA----------GGLQLTTAG--DFFSGQAVLTWKGSQ---YQYQNTLGLVKMLDLSSNKL 206 (395)
Q Consensus 142 l~~L~~l~~~~~~~~~~~~~~----------~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~l~~L~~L~Ls~n~l 206 (395)
+++|+.+.............. ..+.+.... ........+.+.+.. ...+..+++|+.|++++|++
T Consensus 220 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l 299 (466)
T 1o6v_A 220 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 299 (466)
T ss_dssp CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCC
T ss_pred cCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcc
Confidence 555555543332222110000 001111100 011122223322211 11266789999999999999
Q ss_pred ccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCCc
Q 043041 207 GGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSGT 286 (395)
Q Consensus 207 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 286 (395)
++..+ +..+++|+.|++++|++++..| +..+++|+.|++++|++++. ..+..+++|+.|++++|++++.+| ..
T Consensus 300 ~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~ 372 (466)
T 1o6v_A 300 EDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LA 372 (466)
T ss_dssp SCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GT
T ss_pred cCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hh
Confidence 96554 8899999999999999997766 78999999999999999965 468899999999999999999888 67
Q ss_pred ccCccccccccCCCCCCCCCC
Q 043041 287 QLQSFNASTYAGNELCGLPLP 307 (395)
Q Consensus 287 ~l~~l~~~~~~gN~lc~~~~~ 307 (395)
.+..+..+++.+|.+.+.|..
T Consensus 373 ~l~~L~~L~l~~n~~~~~p~~ 393 (466)
T 1o6v_A 373 NLTRITQLGLNDQAWTNAPVN 393 (466)
T ss_dssp TCTTCCEEECCCEEEECCCBC
T ss_pred cCCCCCEEeccCCcccCCchh
Confidence 788899999999977765543
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=5e-29 Score=228.76 Aligned_cols=239 Identities=21% Similarity=0.186 Sum_probs=189.4
Q ss_pred CCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCCCccEEE
Q 043041 22 DRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLS 101 (395)
Q Consensus 22 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~ 101 (395)
..++..+++.+.+.......+..+++|++|+|++|.+++..|..|.++++|++|++++|.+++..| + ..+++|++|+
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~-~~l~~L~~L~ 86 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--L-ESLSTLRTLD 86 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--E-TTCTTCCEEE
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--h-hhcCCCCEEE
Confidence 345677888888876666667778899999999999998888899999999999999999985444 4 3699999999
Q ss_pred ccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccccccCCccccCCCCccccceEEE
Q 043041 102 LMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLT 181 (395)
Q Consensus 102 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (395)
+++|++++.. ..++|++|++++|.+++..+..+. +|+.+........
T Consensus 87 Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~~~---~L~~L~l~~N~l~------------------------- 133 (317)
T 3o53_A 87 LNNNYVQELL-----VGPSIETLHAANNNISRVSCSRGQ---GKKNIYLANNKIT------------------------- 133 (317)
T ss_dssp CCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECCCS---SCEEEECCSSCCC-------------------------
T ss_pred CcCCcccccc-----CCCCcCEEECCCCccCCcCccccC---CCCEEECCCCCCC-------------------------
Confidence 9999998544 338999999999999987766554 4444443222111
Q ss_pred eeccccccccccCcccEEECcCCCCccCCChhhh-cCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCccCcc
Q 043041 182 WKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIM-DLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPS 260 (395)
Q Consensus 182 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 260 (395)
+..+..+..+++|+.|++++|.+++..+..+. .+++|+.|+|++|.+++. |. ...+++|+.|+|++|++++ +|.
T Consensus 134 --~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~ 208 (317)
T 3o53_A 134 --MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGP 208 (317)
T ss_dssp --SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECG
T ss_pred --CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chh
Confidence 11223456688999999999999987777764 789999999999999855 33 3458999999999999995 455
Q ss_pred cccCCCCCCEEeCcCCcCcccCCCCcccCccccccccCCCC
Q 043041 261 SLSLLSGLSVMDLSYNNLSGKIPSGTQLQSFNASTYAGNEL 301 (395)
Q Consensus 261 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~l~~l~~~~~~gN~l 301 (395)
.+..+++|+.|++++|++++..+....+.++..+++.+|.+
T Consensus 209 ~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 209 EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCC
T ss_pred hhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCc
Confidence 58899999999999999996544456778889999999944
No 60
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.96 E-value=2.8e-27 Score=212.11 Aligned_cols=208 Identities=21% Similarity=0.259 Sum_probs=175.1
Q ss_pred CCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCCCccEEE
Q 043041 22 DRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLS 101 (395)
Q Consensus 22 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~ 101 (395)
...+.+++++++++ .+|..+. ++|+.|+|++|.+++..+..|.++++|++|++++|.++ .+|..++..+++|++|+
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEE
Confidence 35778889888888 4676554 67889999999988776678888999999999999888 78887766788999999
Q ss_pred ccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccccccCCccccCCCCccccceEEE
Q 043041 102 LMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLT 181 (395)
Q Consensus 102 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (395)
+++|++++..+..+..+++|++|++++|.+++..+..|..
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------------------------------- 131 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS---------------------------------------- 131 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT----------------------------------------
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc----------------------------------------
Confidence 9999988777777888999999999999988776655544
Q ss_pred eeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCccCccc
Q 043041 182 WKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSS 261 (395)
Q Consensus 182 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 261 (395)
+++|++|++++|.+++..+..+..+++|+.|+|++|.+++..+..|..+++|+.|++++|++++..+..
T Consensus 132 -----------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 200 (270)
T 2o6q_A 132 -----------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA 200 (270)
T ss_dssp -----------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred -----------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH
Confidence 344588999999999777777899999999999999999777778999999999999999999777777
Q ss_pred ccCCCCCCEEeCcCCcCcccCCC
Q 043041 262 LSLLSGLSVMDLSYNNLSGKIPS 284 (395)
Q Consensus 262 l~~l~~L~~L~Ls~N~l~~~~p~ 284 (395)
+..+++|+.|++++|++.+..+.
T Consensus 201 ~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 201 FDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TTTCTTCCEEECCSSCBCCSSSS
T ss_pred hccccCCCEEEecCCCeeCCCcc
Confidence 88999999999999999987664
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.1e-28 Score=239.32 Aligned_cols=222 Identities=23% Similarity=0.168 Sum_probs=179.9
Q ss_pred CCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCCCccEEEccceeeccccCccCCCCCC
Q 043041 41 SMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPF 120 (395)
Q Consensus 41 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 120 (395)
....+++|++|+|++|.+++..|..|..+++|++|++++|.+++..| +. .+++|++|++++|.+++..+ .++
T Consensus 29 l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~-~l~~L~~L~Ls~N~l~~l~~-----~~~ 100 (487)
T 3oja_A 29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LE-SLSTLRTLDLNNNYVQELLV-----GPS 100 (487)
T ss_dssp TSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CT-TCTTCCEEECCSSEEEEEEE-----CTT
T ss_pred hcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cc-cCCCCCEEEecCCcCCCCCC-----CCC
Confidence 33455699999999999998888999999999999999999985555 44 69999999999999996543 389
Q ss_pred ccEEEcccCCCCCCCCccccccccchhccccccccCccccccCCccccCCCCccccceEEEeeccccccccccCcccEEE
Q 043041 121 IQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLD 200 (395)
Q Consensus 121 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 200 (395)
|++|++++|.+++..+..+. +|+.+....... .+..+..+..+++|+.|+
T Consensus 101 L~~L~L~~N~l~~~~~~~l~---~L~~L~L~~N~l---------------------------~~~~~~~~~~l~~L~~L~ 150 (487)
T 3oja_A 101 IETLHAANNNISRVSCSRGQ---GKKNIYLANNKI---------------------------TMLRDLDEGCRSRVQYLD 150 (487)
T ss_dssp CCEEECCSSCCCCEEECCCS---SCEEEECCSSCC---------------------------CSGGGBCGGGGSSEEEEE
T ss_pred cCEEECcCCcCCCCCccccC---CCCEEECCCCCC---------------------------CCCCchhhcCCCCCCEEE
Confidence 99999999999988776554 444444322211 122333456789999999
Q ss_pred CcCCCCccCCChhhh-cCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCc
Q 043041 201 LSSNKLGGEVPEEIM-DLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLS 279 (395)
Q Consensus 201 Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 279 (395)
|++|.+++.+|..+. .+++|+.|+|++|.+++..+ ...+++|+.|+|++|.+++..| .+..+++|+.|++++|.++
T Consensus 151 Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp CTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC
T ss_pred CCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCc
Confidence 999999998888886 79999999999999996633 3469999999999999996554 5889999999999999999
Q ss_pred ccCCCCcccCccccccccCC-CCCC
Q 043041 280 GKIPSGTQLQSFNASTYAGN-ELCG 303 (395)
Q Consensus 280 ~~~p~~~~l~~l~~~~~~gN-~lc~ 303 (395)
+.++....+..+..+++.+| ..|+
T Consensus 228 ~lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 228 LIEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp EECTTCCCCTTCCEEECTTCCBCHH
T ss_pred ccchhhccCCCCCEEEcCCCCCcCc
Confidence 86555567788999999999 4443
No 62
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=7.1e-28 Score=238.71 Aligned_cols=263 Identities=18% Similarity=0.183 Sum_probs=172.2
Q ss_pred EEEccCC-cccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 2 YLDLSNN-LLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 2 ~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
.++++++ .+.+..|..+..+++|+.|++++|.+. .+|+.+..+ +|+.|++++|.++ .+|. ..+++|++|++++|
T Consensus 261 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n 335 (570)
T 2z63_A 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSN 335 (570)
T ss_dssp EEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESC
T ss_pred hhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCC
Confidence 4566666 677777888888888888888888887 577777777 8888888888877 4554 46677777777777
Q ss_pred cccccCchhHhhcCCCccEEEccceeecccc--CccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCcc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGII--PFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSE 158 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~ 158 (395)
.+.+.++. ..+++|++|++++|++++.. |..+..+++|++|++++|.+.+..+. +..+++|+.+..........
T Consensus 336 ~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~ 411 (570)
T 2z63_A 336 KGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQM 411 (570)
T ss_dssp BSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESC
T ss_pred cccccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccc
Confidence 77655444 24677777777777776443 55666777777777777777655444 66666666655332221110
Q ss_pred ccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCc-ccCCcc
Q 043041 159 YWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLT-GQITPK 237 (395)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~ 237 (395)
. ....+..+++|++|++++|.+.+..|..+..+++|+.|++++|.++ +.+|..
T Consensus 412 ~--------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~ 465 (570)
T 2z63_A 412 S--------------------------EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465 (570)
T ss_dssp T--------------------------TSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred c--------------------------chhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhh
Confidence 0 0012344566667777777666666666666667777777777665 456666
Q ss_pred cCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCC-cccCccccccccCC
Q 043041 238 IGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSG-TQLQSFNASTYAGN 299 (395)
Q Consensus 238 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~l~~l~~~~~~gN 299 (395)
+..+++|+.|++++|++++..|..+..+++|+.|++++|++++.+|.. ..+++++.+++.+|
T Consensus 466 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred hhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCC
Confidence 666677777777777666666666666667777777777666655543 45566666666666
No 63
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=4.7e-27 Score=225.92 Aligned_cols=272 Identities=19% Similarity=0.129 Sum_probs=191.5
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++||+++|.+++ +| .+..+++|++|+|++|++++. | ++.+++|++|++++|.+++. + +.++++|++|++++|
T Consensus 45 ~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N 116 (457)
T 3bz5_A 45 TSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTN 116 (457)
T ss_dssp CEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSS
T ss_pred CEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCC
Confidence 579999999996 46 689999999999999999874 4 88999999999999999964 4 889999999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCcccc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYW 160 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 160 (395)
+++ .+| +. .+++|++|++++|++++. .++.+++|++|++++|...+.+ .+..+++|+.+...........
T Consensus 117 ~l~-~l~--~~-~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~- 186 (457)
T 3bz5_A 117 KLT-KLD--VS-QNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD- 186 (457)
T ss_dssp CCS-CCC--CT-TCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC-
T ss_pred cCC-eec--CC-CCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec-
Confidence 998 576 44 699999999999999874 3788899999999999655544 4667777777765443332210
Q ss_pred ccCCccccCCCCccccceEEEeeccc--cccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCccc
Q 043041 161 FAGGLQLTTAGDFFSGQAVLTWKGSQ--YQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKI 238 (395)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 238 (395)
.. .......+.+.+.. ...+..+++|+.|++++|++++ +| +..+++|+.|++++|++++..+..+
T Consensus 187 l~----------~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l 253 (457)
T 3bz5_A 187 VS----------QNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTL 253 (457)
T ss_dssp CT----------TCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTC
T ss_pred cc----------cCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHC
Confidence 00 00111111111110 0125567788888888888885 55 7778888888888888887655555
Q ss_pred CCCC-------CCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCC---------cccCccccccccCCCCC
Q 043041 239 GQLK-------SLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSG---------TQLQSFNASTYAGNELC 302 (395)
Q Consensus 239 ~~l~-------~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~---------~~l~~l~~~~~~gN~lc 302 (395)
..+. +|+.|++++|.+.+.+| +..+++|+.|++++|...+.+|.. ...+.+..+++++|.+.
T Consensus 254 ~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~ 331 (457)
T 3bz5_A 254 SKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELT 331 (457)
T ss_dssp TTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCS
T ss_pred CCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccc
Confidence 4443 45566666666666665 467788888888888877776642 12234455566666666
Q ss_pred CCC
Q 043041 303 GLP 305 (395)
Q Consensus 303 ~~~ 305 (395)
+.+
T Consensus 332 ~l~ 334 (457)
T 3bz5_A 332 ELD 334 (457)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 64
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=6.3e-27 Score=209.77 Aligned_cols=202 Identities=23% Similarity=0.274 Sum_probs=179.2
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
+.+++++++++ .+|..+. ++|+.|+|++|++++..+.+|.++++|++|+|++|.++...+..|.++++|++|++++|
T Consensus 19 ~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 19 NSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 36899999998 5777665 68999999999999877789999999999999999999776777899999999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCcccc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYW 160 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 160 (395)
.++ .+|...+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..|..
T Consensus 96 ~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------------------- 155 (270)
T 2o6q_A 96 KLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK------------------- 155 (270)
T ss_dssp CCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------
T ss_pred cCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccC-------------------
Confidence 999 788777667999999999999999888888999999999999999998766655544
Q ss_pred ccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCC
Q 043041 161 FAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQ 240 (395)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 240 (395)
+++|+.|++++|.+++..+..+..+++|+.|+|++|.+++..+..+..
T Consensus 156 --------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 203 (270)
T 2o6q_A 156 --------------------------------LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203 (270)
T ss_dssp --------------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred --------------------------------CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcc
Confidence 445699999999999877778999999999999999999777777999
Q ss_pred CCCCCEEECcCCccCcc
Q 043041 241 LKSLDFLDLSRNRFFGG 257 (395)
Q Consensus 241 l~~L~~L~Ls~N~l~~~ 257 (395)
+++|+.|+|++|.+...
T Consensus 204 l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 204 LEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CTTCCEEECCSSCBCCS
T ss_pred ccCCCEEEecCCCeeCC
Confidence 99999999999998743
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=1.3e-27 Score=214.90 Aligned_cols=208 Identities=24% Similarity=0.210 Sum_probs=180.3
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++|++++|++++..+..|.++++|++|++++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|++++|
T Consensus 31 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 110 (276)
T 2z62_A 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110 (276)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCC
Confidence 57999999999888889999999999999999999888889999999999999999999888889999999999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccc-cCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGI-IPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEY 159 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 159 (395)
.+. .++...+..+++|++|++++|++++. +|..+..+++|++|++++|++++..+..+..+.+++.+.
T Consensus 111 ~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~---------- 179 (276)
T 2z62_A 111 NLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN---------- 179 (276)
T ss_dssp CCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC----------
T ss_pred Ccc-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccc----------
Confidence 998 56553344699999999999999864 688999999999999999999987777776655553321
Q ss_pred cccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccC
Q 043041 160 WFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIG 239 (395)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 239 (395)
..|++++|.+++..+..+ ...+|+.|++++|.+++..+..+.
T Consensus 180 -------------------------------------l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~ 221 (276)
T 2z62_A 180 -------------------------------------LSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFD 221 (276)
T ss_dssp -------------------------------------EEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTT
T ss_pred -------------------------------------eeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhc
Confidence 279999999996555444 445899999999999977777789
Q ss_pred CCCCCCEEECcCCccCcc
Q 043041 240 QLKSLDFLDLSRNRFFGG 257 (395)
Q Consensus 240 ~l~~L~~L~Ls~N~l~~~ 257 (395)
.+++|+.|++++|.+...
T Consensus 222 ~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 222 RLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp TCCSCCEEECCSSCBCCC
T ss_pred ccccccEEEccCCccccc
Confidence 999999999999999854
No 66
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.95 E-value=1.2e-26 Score=209.92 Aligned_cols=206 Identities=23% Similarity=0.254 Sum_probs=181.4
Q ss_pred ccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCCCc
Q 043041 18 WPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKL 97 (395)
Q Consensus 18 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L 97 (395)
+.++++++.++++++.++ .+|..+. +.++.|+|++|.+++..+..|.++++|++|++++|.++ .++.. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcC
Confidence 678899999999999998 5676664 78999999999999888889999999999999999998 66665 369999
Q ss_pred cEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccccccCCccccCCCCccccc
Q 043041 98 IVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQ 177 (395)
Q Consensus 98 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (395)
++|++++|+++ .+|..+..+++|++|++++|++++..+..|..+
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l----------------------------------- 123 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL----------------------------------- 123 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTC-----------------------------------
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCC-----------------------------------
Confidence 99999999998 678888999999999999999998777666544
Q ss_pred eEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCcc
Q 043041 178 AVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGG 257 (395)
Q Consensus 178 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 257 (395)
++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ .
T Consensus 124 ----------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ 186 (290)
T 1p9a_G 124 ----------------GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T 186 (290)
T ss_dssp ----------------TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred ----------------CCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-c
Confidence 44589999999999877888899999999999999999766677889999999999999999 7
Q ss_pred CcccccCCCCCCEEeCcCCcCcccC
Q 043041 258 IPSSLSLLSGLSVMDLSYNNLSGKI 282 (395)
Q Consensus 258 ~p~~l~~l~~L~~L~Ls~N~l~~~~ 282 (395)
+|..+..++.|+.+++++|++.+..
T Consensus 187 ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 187 IPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred cChhhcccccCCeEEeCCCCccCcC
Confidence 7888888899999999999998754
No 67
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=1.9e-26 Score=221.67 Aligned_cols=271 Identities=17% Similarity=0.145 Sum_probs=205.2
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++|+|++|++++. | +..+++|++|++++|++++. + ++++++|++|++++|.+++ +| +..+++|++|++++|
T Consensus 67 ~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 67 TKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARN 137 (457)
T ss_dssp SEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTS
T ss_pred CEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCC
Confidence 5799999999964 4 88999999999999999974 3 8899999999999999996 44 889999999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCcccc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYW 160 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 160 (395)
+++ .++ +. .+++|++|++++|+..+.+ .+..+++|++|++++|++++. | +..+++|+.+.......... .
T Consensus 138 ~l~-~l~--l~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~-~ 207 (457)
T 3bz5_A 138 TLT-EID--VS-HNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL-D 207 (457)
T ss_dssp CCS-CCC--CT-TCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC-C
T ss_pred ccc-eec--cc-cCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee-c
Confidence 998 465 43 5899999999999655555 478889999999999999874 3 66777777766544333221 0
Q ss_pred ccCCccccCCCCccccceEEEeeccc--cccccccCcccEEECcCCCCccCCChhhhcCc-------CCCEEeCCCCcCc
Q 043041 161 FAGGLQLTTAGDFFSGQAVLTWKGSQ--YQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLV-------GLIAMNLSRNNLT 231 (395)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-------~L~~L~Ls~N~l~ 231 (395)
.. .......+.+.+.. ...+..+++|+.|++++|++++..+..+..+. +|+.|++++|.+.
T Consensus 208 l~----------~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~ 277 (457)
T 3bz5_A 208 LN----------QNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQL 277 (457)
T ss_dssp CT----------TCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTC
T ss_pred cc----------cCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccC
Confidence 00 01111111111110 01156789999999999999987665555554 5667777777777
Q ss_pred ccCCcccCCCCCCCEEECcCCccCccCcc--------cccCCCCCCEEeCcCCcCcccCCCCcccCccccccccCCCCCC
Q 043041 232 GQITPKIGQLKSLDFLDLSRNRFFGGIPS--------SLSLLSGLSVMDLSYNNLSGKIPSGTQLQSFNASTYAGNELCG 303 (395)
Q Consensus 232 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--------~l~~l~~L~~L~Ls~N~l~~~~p~~~~l~~l~~~~~~gN~lc~ 303 (395)
+.+| ++.+++|+.|++++|...+.+|. .+..+++|+.|++++|++++. | ...++.+..+++++|.+.+
T Consensus 278 ~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~-l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 278 IYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D-VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C-CTTCTTCSEEECCSSCCCB
T ss_pred Cccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c-cccCCcCcEEECCCCCCCC
Confidence 6776 57889999999999988776664 256778999999999999984 4 5678889999999997776
Q ss_pred C
Q 043041 304 L 304 (395)
Q Consensus 304 ~ 304 (395)
.
T Consensus 354 l 354 (457)
T 3bz5_A 354 F 354 (457)
T ss_dssp C
T ss_pred c
Confidence 4
No 68
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.95 E-value=3e-27 Score=212.11 Aligned_cols=216 Identities=22% Similarity=0.285 Sum_probs=168.8
Q ss_pred ccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccc
Q 043041 5 LSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSG 84 (395)
Q Consensus 5 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~ 84 (395)
+..+.+.+.. ....+++|+.|++++|.++. + ..++.+++|++|++++|.+++ + ..+..+++|++|++++|.++
T Consensus 26 l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~- 98 (272)
T 3rfs_A 26 LKKKSVTDAV--TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQ- 98 (272)
T ss_dssp HTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCC-
T ss_pred hcCccccccc--ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccC-
Confidence 4445554332 35677888999999888873 3 357888899999999998885 3 37888889999999999888
Q ss_pred cCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccccccCC
Q 043041 85 EIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGG 164 (395)
Q Consensus 85 ~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~ 164 (395)
.++...+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..
T Consensus 99 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----------------------- 155 (272)
T 3rfs_A 99 SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK----------------------- 155 (272)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------------------
T ss_pred ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc-----------------------
Confidence 666655456888999999999888777777888888999999988888766655443
Q ss_pred ccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCC
Q 043041 165 LQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSL 244 (395)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 244 (395)
+++|+.|++++|++++..+..+..+++|+.|++++|.+++..|..++.+++|
T Consensus 156 ----------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (272)
T 3rfs_A 156 ----------------------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207 (272)
T ss_dssp ----------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred ----------------------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCC
Confidence 3445888888888887777778888889999999998887777778888899
Q ss_pred CEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCC
Q 043041 245 DFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSG 285 (395)
Q Consensus 245 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 285 (395)
+.|++++|.+.+ .++.|+.+++..|.++|.+|..
T Consensus 208 ~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 208 QYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCT
T ss_pred CEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCc
Confidence 999998888764 3556888888888888888864
No 69
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.94 E-value=2.1e-26 Score=206.51 Aligned_cols=204 Identities=21% Similarity=0.206 Sum_probs=178.5
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++|++++|.++ .++ .+..+++|+.|++++|.+++. ..++.+++|++|++++|.+++..+..+.++++|++|++++|
T Consensus 44 ~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 119 (272)
T 3rfs_A 44 DQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119 (272)
T ss_dssp CEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred eeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC
Confidence 47899999997 344 589999999999999999863 47899999999999999999888888999999999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCcccc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYW 160 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 160 (395)
.++ .+|...+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..
T Consensus 120 ~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------- 179 (272)
T 3rfs_A 120 QLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK------------------- 179 (272)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------
T ss_pred cCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC-------------------
Confidence 999 676665557999999999999999888888899999999999999999776655544
Q ss_pred ccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCC
Q 043041 161 FAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQ 240 (395)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 240 (395)
+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+.
T Consensus 180 --------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~------- 220 (272)
T 3rfs_A 180 --------------------------------LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT------- 220 (272)
T ss_dssp --------------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------
T ss_pred --------------------------------CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------
Confidence 44569999999999988888899999999999999998743
Q ss_pred CCCCCEEECcCCccCccCcccccCCCC
Q 043041 241 LKSLDFLDLSRNRFFGGIPSSLSLLSG 267 (395)
Q Consensus 241 l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 267 (395)
++.|+.|+++.|.++|.+|..++.++.
T Consensus 221 ~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 221 CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 567999999999999999998776543
No 70
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=2.7e-25 Score=213.46 Aligned_cols=115 Identities=23% Similarity=0.345 Sum_probs=70.3
Q ss_pred CCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCCCccEEE
Q 043041 22 DRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLS 101 (395)
Q Consensus 22 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~ 101 (395)
++|++|++++|++++ +| +|+++++|++|++++|++++ +|..+ .+|++|++++|.++ .+| .+. .+++|++|+
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~-~l~-~~~-~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLE-ELP-ELQ-NLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCS-SCC-CCT-TCTTCCEEE
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCC-cCc-ccc-CCCCCCEEE
Confidence 467777777777765 55 47777777777777777764 44332 46777777777776 455 333 467777777
Q ss_pred ccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhcccc
Q 043041 102 LMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSS 151 (395)
Q Consensus 102 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~ 151 (395)
+++|++++ +|... ++|++|++++|.+. .+| .+..+++|+.+...
T Consensus 202 l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 202 ADNNSLKK-LPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYAD 245 (454)
T ss_dssp CCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECC
T ss_pred CCCCcCCc-CCCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECC
Confidence 77776664 33221 45666666666666 334 25556666555543
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.94 E-value=1.2e-25 Score=203.37 Aligned_cols=196 Identities=23% Similarity=0.222 Sum_probs=174.3
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
+++++++|.++ .+|..+. ++++.|+|++|++++..+..|.++++|++|+|++|.+++..+ . ..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~Ls~N 87 (290)
T 1p9a_G 13 LEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGTLDLSHN 87 (290)
T ss_dssp CEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCEEECCSS
T ss_pred cEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCEEECCCC
Confidence 47899999998 6776665 789999999999998888999999999999999999995443 2 78999999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCcccc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYW 160 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 160 (395)
.++ .+|..+. .+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..
T Consensus 88 ~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------------------- 146 (290)
T 1p9a_G 88 QLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP------------------- 146 (290)
T ss_dssp CCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT-------------------
T ss_pred cCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccc-------------------
Confidence 998 8998776 6999999999999999888889999999999999999999776665544
Q ss_pred ccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCC
Q 043041 161 FAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQ 240 (395)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 240 (395)
+++|+.|+|++|++++..+..+..+++|+.|+|++|+++ .+|..+..
T Consensus 147 --------------------------------l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~ 193 (290)
T 1p9a_G 147 --------------------------------TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG 193 (290)
T ss_dssp --------------------------------CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred --------------------------------ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcc
Confidence 445699999999999776777889999999999999999 78888888
Q ss_pred CCCCCEEECcCCccC
Q 043041 241 LKSLDFLDLSRNRFF 255 (395)
Q Consensus 241 l~~L~~L~Ls~N~l~ 255 (395)
+++|+.|+|++|.+.
T Consensus 194 ~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 194 SHLLPFAFLHGNPWL 208 (290)
T ss_dssp TCCCSEEECCSCCBC
T ss_pred cccCCeEEeCCCCcc
Confidence 999999999999986
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.94 E-value=4.1e-26 Score=200.71 Aligned_cols=205 Identities=21% Similarity=0.257 Sum_probs=136.1
Q ss_pred ccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEeccccc-CcccCchhccCCCCCCEEECCC-CcccccCc
Q 043041 10 LSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNS-LTGELPSSLQNCSLLILMDLGR-NALSGEIP 87 (395)
Q Consensus 10 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~ls~-n~l~~~ip 87 (395)
++ .+|. +. ++|+.|++++|++++..+..|+++++|++|++++|. ++...+..|.++++|++|++++ |.++ .+|
T Consensus 23 l~-~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~ 97 (239)
T 2xwt_C 23 IQ-RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YID 97 (239)
T ss_dssp CS-SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EEC
T ss_pred cc-ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcC
Confidence 44 4555 33 377788888888776666677778888888888876 7756566777777888888877 7777 666
Q ss_pred hhHhhcCCCccEEEccceeeccccCccCCCCCCcc---EEEcccC-CCCCCCCccccccccchhccccccccCccccccC
Q 043041 88 KWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQ---ILDLSSN-NIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAG 163 (395)
Q Consensus 88 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~ 163 (395)
...+.++++|++|++++|++++ +|. +..+++|+ +|++++| .+++..+..|..+
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l--------------------- 154 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGL--------------------- 154 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTT---------------------
T ss_pred HHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccch---------------------
Confidence 5555567777777777777775 454 66666666 7777777 6665554444333
Q ss_pred CccccCCCCccccceEEEeeccccccccccCccc-EEECcCCCCccCCChhhhcCcCCCEEeCCCCc-CcccCCcccCCC
Q 043041 164 GLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVK-MLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNN-LTGQITPKIGQL 241 (395)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l 241 (395)
++|+ .|++++|.++ .+|......++|+.|++++|. +++..+..|..+
T Consensus 155 ------------------------------~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l 203 (239)
T 2xwt_C 155 ------------------------------CNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGV 203 (239)
T ss_dssp ------------------------------BSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTC
T ss_pred ------------------------------hcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhcc
Confidence 3346 6777777777 344332233677777777773 765556667777
Q ss_pred -CCCCEEECcCCccCccCcccccCCCCCCEEeCcCC
Q 043041 242 -KSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYN 276 (395)
Q Consensus 242 -~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 276 (395)
++|+.|++++|++++ +|.. .+++|+.|+++++
T Consensus 204 ~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 204 YSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp SBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred ccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 777777777777763 3432 5566777777655
No 73
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=3.8e-26 Score=219.44 Aligned_cols=261 Identities=17% Similarity=0.162 Sum_probs=172.6
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCc-------------cEEecccccCcccCchhcc
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNI-------------QILSLHNNSLTGELPSSLQ 67 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L-------------~~L~L~~n~l~~~~p~~~~ 67 (395)
++|++++|.+ |.+|++++++++|++|++++|.+.|.+|.+++++++| ++|++++|.+++ +|..
T Consensus 14 ~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~-- 89 (454)
T 1jl5_A 14 QEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL-- 89 (454)
T ss_dssp ---------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC--
T ss_pred hhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC--
Confidence 4689999999 7999999999999999999999999999999998875 999999999985 4542
Q ss_pred CCCCCCEEECCCCcccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchh
Q 043041 68 NCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQ 147 (395)
Q Consensus 68 ~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 147 (395)
.++|++|++++|.++ .+|.. +++|++|++++|++++. |.. .++|++|++++|.+++ +| .++.+++|+.
T Consensus 90 -~~~L~~L~l~~n~l~-~lp~~----~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 90 -PPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKI 157 (454)
T ss_dssp -CTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCE
T ss_pred -cCCCCEEEccCCcCC-ccccc----cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCE
Confidence 478999999999998 47753 57888999988888742 221 2688888888888886 55 5888888887
Q ss_pred ccccccccCccccccCCccccCCCCccccceEEEeecc----ccccccccCcccEEECcCCCCccCCChhhhcCcCCCEE
Q 043041 148 EKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGS----QYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAM 223 (395)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 223 (395)
+............. ......+.+.+. .+ .+..+++|+.|++++|.+++ +|.. .++|+.|
T Consensus 158 L~l~~N~l~~lp~~------------~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L 220 (454)
T 1jl5_A 158 IDVDNNSLKKLPDL------------PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESI 220 (454)
T ss_dssp EECCSSCCSCCCCC------------CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEE
T ss_pred EECCCCcCcccCCC------------cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEE
Confidence 77544333221000 001111111110 12 35678888888888888885 4432 2588888
Q ss_pred eCCCCcCcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCCcccCccccccccCCCCCC
Q 043041 224 NLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSGTQLQSFNASTYAGNELCG 303 (395)
Q Consensus 224 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~l~~l~~~~~~gN~lc~ 303 (395)
++++|.++ .+|. ++.+++|+.|++++|++++ +|.. +++|+.|++++|++++ +|.. +.+++.+++++|.+.+
T Consensus 221 ~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~--~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 221 VAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL--PQSLTFLDVSENIFSG 291 (454)
T ss_dssp ECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCSE
T ss_pred ECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc--cCcCCEEECcCCccCc
Confidence 99998888 6674 8889999999999998885 5542 4788899999998886 4542 3566777777775554
No 74
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.93 E-value=1.6e-25 Score=198.36 Aligned_cols=119 Identities=22% Similarity=0.199 Sum_probs=78.8
Q ss_pred cccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCc
Q 043041 195 LVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLS 274 (395)
Q Consensus 195 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 274 (395)
+|++|++++|++++..+..+..+++|+.|+|++|++++..+..|+.+++|+.|+|++|++++..+..+..+++|+.|+++
T Consensus 108 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187 (251)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 34666666666665555566777888888888888886666678888888888888888887777778888888888888
Q ss_pred CCcCcccCCCCcccCc------cccccccCCCCCCCCCCCCCCCC
Q 043041 275 YNNLSGKIPSGTQLQS------FNASTYAGNELCGLPLPNKCPDG 313 (395)
Q Consensus 275 ~N~l~~~~p~~~~l~~------l~~~~~~gN~lc~~~~~~~c~~~ 313 (395)
+|++++.......+.. ....+..|+.+++.|....|..+
T Consensus 188 ~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 232 (251)
T 3m19_A 188 GNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDG 232 (251)
T ss_dssp SCCBCTTSTTHHHHHHHHHHSGGGBCC-------CCGGGCBBTTS
T ss_pred CCceeCCccccHHHHHHHHhcccceeeccCcccccCCCcCccCCC
Confidence 8888876443322211 12233456677777777778654
No 75
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.93 E-value=3.9e-27 Score=222.22 Aligned_cols=247 Identities=16% Similarity=0.185 Sum_probs=174.0
Q ss_pred CCCCccCCCCCCEEECCCCccccc----CCCCCCCCCCccEEecccc---cCcccCchhc-------cCCCCCCEEECCC
Q 043041 14 LPDCWPLFDRLRILDLANNNFSGK----IPDSMGSLPNIQILSLHNN---SLTGELPSSL-------QNCSLLILMDLGR 79 (395)
Q Consensus 14 ~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n---~l~~~~p~~~-------~~l~~L~~L~ls~ 79 (395)
++..+..+++|+.|+|++|.+++. ++..+..+++|++|+|++| ++++.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 455566778888888888888765 3345777888888888885 3444555544 6788888888888
Q ss_pred Ccccc----cCchhHhhcCCCccEEEccceeeccccCccC----CCC---------CCccEEEcccCCCCC-CCC---cc
Q 043041 80 NALSG----EIPKWIGESLPKLIVLSLMSNKFHGIIPFQL----CYL---------PFIQILDLSSNNIPG-IIP---KC 138 (395)
Q Consensus 80 n~l~~----~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l----~~l---------~~L~~L~l~~n~l~~-~~~---~~ 138 (395)
|.+.+ .+|..+. .+++|++|++++|.++...+..+ ..+ ++|++|++++|.++. ..+ ..
T Consensus 104 n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLS-KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp CCCCTTTHHHHHHHHH-HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CcCCHHHHHHHHHHHH-hCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 88875 3666665 48888888888888864433333 333 788888888888862 233 34
Q ss_pred ccccccchhccccccccCccccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCc----cCCChhh
Q 043041 139 FNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLG----GEVPEEI 214 (395)
Q Consensus 139 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~p~~~ 214 (395)
+..+++|+.+..........- .....+..+..+++|+.|+|++|.++ +.+|..+
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g----------------------~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l 240 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEG----------------------IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHH----------------------HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred HHhCCCcCEEECcCCCCCHhH----------------------HHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH
Confidence 445556655543322211000 00011114456788999999999996 5678888
Q ss_pred hcCcCCCEEeCCCCcCccc----CCccc--CCCCCCCEEECcCCccCc----cCcccc-cCCCCCCEEeCcCCcCcccCC
Q 043041 215 MDLVGLIAMNLSRNNLTGQ----ITPKI--GQLKSLDFLDLSRNRFFG----GIPSSL-SLLSGLSVMDLSYNNLSGKIP 283 (395)
Q Consensus 215 ~~l~~L~~L~Ls~N~l~~~----~p~~~--~~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~Ls~N~l~~~~p 283 (395)
..+++|+.|+|++|.+++. +|..+ +.+++|+.|+|++|.+++ .+|..+ .++++|+.|++++|++++..|
T Consensus 241 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 9999999999999999865 56666 348999999999999997 477766 668999999999999987764
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.93 E-value=3.9e-25 Score=194.43 Aligned_cols=194 Identities=18% Similarity=0.177 Sum_probs=168.5
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCc-ccccCCCCCCCCCCccEEeccc-ccCcccCchhccCCCCCCEEECC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNN-FSGKIPDSMGSLPNIQILSLHN-NSLTGELPSSLQNCSLLILMDLG 78 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~ls 78 (395)
++|++++|++++..+..|.++++|+.|++++|+ +++..+.+|.++++|++|++++ |.+++..+..|.++++|++|+++
T Consensus 34 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~ 113 (239)
T 2xwt_C 34 QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113 (239)
T ss_dssp CEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEE
T ss_pred cEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCC
Confidence 579999999998777799999999999999997 8877777999999999999999 99997777889999999999999
Q ss_pred CCcccccCchhHhhcCCCcc---EEEccce-eeccccCccCCCCCCcc-EEEcccCCCCCCCCccccccccchhcccccc
Q 043041 79 RNALSGEIPKWIGESLPKLI---VLSLMSN-KFHGIIPFQLCYLPFIQ-ILDLSSNNIPGIIPKCFNNFTAMAQEKSSVL 153 (395)
Q Consensus 79 ~n~l~~~ip~~~~~~l~~L~---~L~L~~n-~l~~~~p~~l~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~ 153 (395)
+|.++ .+|. +. .+++|+ +|++++| ++++..+..|..+++|+ +|++++|+++...+..+..
T Consensus 114 ~n~l~-~lp~-~~-~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~------------ 178 (239)
T 2xwt_C 114 NTGLK-MFPD-LT-KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG------------ 178 (239)
T ss_dssp EECCC-SCCC-CT-TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT------------
T ss_pred CCCCc-cccc-cc-cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC------------
Confidence 99999 6887 43 588888 9999999 99988888899999999 9999999998444333321
Q ss_pred ccCccccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCC-CccCCChhhhcC-cCCCEEeCCCCcCc
Q 043041 154 SVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNK-LGGEVPEEIMDL-VGLIAMNLSRNNLT 231 (395)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~ 231 (395)
++|+.|++++|+ +++..+..|..+ ++|+.|++++|+++
T Consensus 179 ----------------------------------------~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 179 ----------------------------------------TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp ----------------------------------------CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred ----------------------------------------CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 346899999995 997777889999 99999999999999
Q ss_pred ccCCcccCCCCCCCEEECcCC
Q 043041 232 GQITPKIGQLKSLDFLDLSRN 252 (395)
Q Consensus 232 ~~~p~~~~~l~~L~~L~Ls~N 252 (395)
.+|.. .+++|+.|+++++
T Consensus 219 -~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 219 -ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp -CCCCT--TCTTCSEEECTTC
T ss_pred -cCChh--HhccCceeeccCc
Confidence 45544 6789999999876
No 77
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=6.9e-27 Score=218.49 Aligned_cols=136 Identities=20% Similarity=0.167 Sum_probs=112.4
Q ss_pred EEEccCCcccccCCCCccCCCCCCEEECCCCcccccCC----CCCCCCC-CccEEecccccCcccCchhccCC-----CC
Q 043041 2 YLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIP----DSMGSLP-NIQILSLHNNSLTGELPSSLQNC-----SL 71 (395)
Q Consensus 2 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l-----~~ 71 (395)
++++++|.+++.+|+.+...++|+.|+|++|.+++..+ ..|.+++ +|++|+|++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 67899999999999877777889999999999997666 7788888 89999999999998777777765 99
Q ss_pred CCEEECCCCcccccCchhHhh---cC-CCccEEEccceeeccccCccC----CC-CCCccEEEcccCCCCCCCCc
Q 043041 72 LILMDLGRNALSGEIPKWIGE---SL-PKLIVLSLMSNKFHGIIPFQL----CY-LPFIQILDLSSNNIPGIIPK 137 (395)
Q Consensus 72 L~~L~ls~n~l~~~ip~~~~~---~l-~~L~~L~L~~n~l~~~~p~~l----~~-l~~L~~L~l~~n~l~~~~~~ 137 (395)
|++|++++|.+++..+..+.. .+ ++|++|++++|++++..+..+ .. .++|++|++++|.+++..+.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 156 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD 156 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH
Confidence 999999999998666554442 23 899999999999987655443 34 36999999999999865443
No 78
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=3.9e-24 Score=211.81 Aligned_cols=251 Identities=25% Similarity=0.302 Sum_probs=162.5
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++|++++|.++ .+|..+. ++|+.|+|++|+++ .+|. .+++|++|+|++|.++ .+|. .+++|++|++++|
T Consensus 43 ~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 43 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSC
T ss_pred cEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCC
Confidence 47899999998 7787766 79999999999998 4565 5789999999999998 4565 6789999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCcccc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYW 160 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 160 (395)
.++ .+|. .+++|+.|++++|++++ +|.. +++|++|++++|.+++. |..+.++..| ............
T Consensus 112 ~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~~~~~L~~L---~L~~N~l~~l~~ 178 (622)
T 3g06_A 112 PLT-HLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PALPSELCKL---WAYNNQLTSLPM 178 (622)
T ss_dssp CCC-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CCCCTTCCEE---ECCSSCCSCCCC
T ss_pred cCC-CCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CCccCCCCEE---ECCCCCCCCCcc
Confidence 998 6776 37889999999998885 4543 47888999999988863 3333333332 211111110000
Q ss_pred c--------cCCccccCCCCccccceEEEeeccccc-cccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCc
Q 043041 161 F--------AGGLQLTTAGDFFSGQAVLTWKGSQYQ-YQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLT 231 (395)
Q Consensus 161 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 231 (395)
. ...+.+...+........+.+.+.... ....+++|+.|++++|.+++ +| ..+++|+.|+|++|.|+
T Consensus 179 ~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~ 254 (622)
T 3g06_A 179 LPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT 254 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS
T ss_pred cCCCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC
Confidence 0 000111111111111122222221111 11223667777777777774 44 45577777777777777
Q ss_pred ccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCC
Q 043041 232 GQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPS 284 (395)
Q Consensus 232 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 284 (395)
.+|. .+++|+.|+|++|+++ .+|..+..+++|+.|++++|++++.+|.
T Consensus 255 -~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 255 -SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp -CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred -cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 4554 4577777888888777 6677777777788888888877776654
No 79
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=3.1e-24 Score=190.08 Aligned_cols=179 Identities=20% Similarity=0.260 Sum_probs=110.6
Q ss_pred CCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCCCccEEEcc
Q 043041 24 LRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLM 103 (395)
Q Consensus 24 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L~ 103 (395)
.+.++++++.++ .+|..+. +.++.|+|++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|+++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEECC
Confidence 445555555555 3444433 45555666666655555555555666666666666655 3333333345666666666
Q ss_pred ceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccccccCCccccCCCCccccceEEEee
Q 043041 104 SNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWK 183 (395)
Q Consensus 104 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (395)
+|++++..+..+..+++|++|++++|.+++..+..|..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------------------------------------------ 129 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR------------------------------------------ 129 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------------------------------------------
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhcc------------------------------------------
Confidence 66666555555666666666666666666544443332
Q ss_pred ccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCcc
Q 043041 184 GSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGG 257 (395)
Q Consensus 184 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 257 (395)
+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|.+...
T Consensus 130 ---------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 130 ---------LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ---------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ---------CCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 23346677777777755555677777888888888888766666777888888888888888755
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.92 E-value=2e-25 Score=204.10 Aligned_cols=224 Identities=22% Similarity=0.252 Sum_probs=161.5
Q ss_pred CCCCEEECCCCcccccCCC---CCCCCCCccEEecccccCcccCchhc--cCCCCCCEEECCCCcccccCc----hhHhh
Q 043041 22 DRLRILDLANNNFSGKIPD---SMGSLPNIQILSLHNNSLTGELPSSL--QNCSLLILMDLGRNALSGEIP----KWIGE 92 (395)
Q Consensus 22 ~~L~~L~Ls~n~l~~~~p~---~~~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~ls~n~l~~~ip----~~~~~ 92 (395)
..++.+.+.++.++...-. .+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~- 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW- 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-
Confidence 3467888888877532111 12235679999999999998888887 889999999999999986554 2333
Q ss_pred cCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCC---CC-ccccccccchhccccccccCccccccCCcccc
Q 043041 93 SLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGI---IP-KCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLT 168 (395)
Q Consensus 93 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~---~~-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~ 168 (395)
.+++|++|++++|++.+..+..+..+++|++|++++|++.+. .+ ..+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~---------------------------- 194 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH---------------------------- 194 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT----------------------------
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh----------------------------
Confidence 588999999999999888888899999999999999987642 11 1112
Q ss_pred CCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCCh----hhhcCcCCCEEeCCCCcCcccCCcccCCC---
Q 043041 169 TAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPE----EIMDLVGLIAMNLSRNNLTGQITPKIGQL--- 241 (395)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l--- 241 (395)
.+++|++|++++|+++ .++. .+..+++|++|+|++|.+++..|..+..+
T Consensus 195 -----------------------~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 195 -----------------------KFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp -----------------------SSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred -----------------------cCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 3445677778888776 3332 24667788888888888877667666665
Q ss_pred CCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCCcccCccccccccCCCCC
Q 043041 242 KSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSGTQLQSFNASTYAGNELC 302 (395)
Q Consensus 242 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~l~~l~~~~~~gN~lc 302 (395)
++|++|+|++|+++ .+|..+. ++|+.|++++|++++. |....++.++.+++++|.+.
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTTS
T ss_pred CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCCC
Confidence 57888888888887 5666553 6788888888888753 33456677777777777554
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.92 E-value=1e-25 Score=206.01 Aligned_cols=225 Identities=22% Similarity=0.194 Sum_probs=176.1
Q ss_pred EEEccCCcccccC-CC--CccCCCCCCEEECCCCcccccCCCCC--CCCCCccEEecccccCcccCc----hhccCCCCC
Q 043041 2 YLDLSNNLLSGRL-PD--CWPLFDRLRILDLANNNFSGKIPDSM--GSLPNIQILSLHNNSLTGELP----SSLQNCSLL 72 (395)
Q Consensus 2 ~L~Ls~n~l~~~~-p~--~~~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L 72 (395)
.+++.++.++... .. .+..+++|++|++++|++++..|..+ ..+++|++|+|++|.+++..+ ..+..+++|
T Consensus 68 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L 147 (310)
T 4glp_A 68 RLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGL 147 (310)
T ss_dssp EEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCC
T ss_pred EEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCC
Confidence 4566666654221 00 12235679999999999999999988 899999999999999997555 445679999
Q ss_pred CEEECCCCcccccCchhHhhcCCCccEEEccceeeccc--c--CccCCCCCCccEEEcccCCCCCCCCccccccccchhc
Q 043041 73 ILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGI--I--PFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQE 148 (395)
Q Consensus 73 ~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~--~--p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l 148 (395)
++|++++|.+. .++...+..+++|++|++++|++.+. + +..+..+++|++|++++|+++...+.. ..
T Consensus 148 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~-~~------- 218 (310)
T 4glp_A 148 KVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVC-AA------- 218 (310)
T ss_dssp CEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHH-HH-------
T ss_pred CEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHH-HH-------
Confidence 99999999998 55544444799999999999997652 2 233478999999999999996322110 00
Q ss_pred cccccccCccccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcC---cCCCEEeC
Q 043041 149 KSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDL---VGLIAMNL 225 (395)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l---~~L~~L~L 225 (395)
.+..+++|++|+|++|++++..|..+..+ ++|++|+|
T Consensus 219 ----------------------------------------l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~L 258 (310)
T 4glp_A 219 ----------------------------------------LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNL 258 (310)
T ss_dssp ----------------------------------------HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEEC
T ss_pred ----------------------------------------HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEEC
Confidence 01245667999999999998888887776 69999999
Q ss_pred CCCcCcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcc
Q 043041 226 SRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSG 280 (395)
Q Consensus 226 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 280 (395)
++|+++ .+|..+. ++|+.|+|++|++++. |. +..+++|+.|++++|+++.
T Consensus 259 s~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 259 SFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 999999 7787774 8999999999999964 43 6788999999999999974
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.92 E-value=1e-24 Score=199.02 Aligned_cols=207 Identities=21% Similarity=0.316 Sum_probs=169.8
Q ss_pred ccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccc
Q 043041 5 LSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSG 84 (395)
Q Consensus 5 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~ 84 (395)
+..+.+++.+ .+..+++|+.|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.++
T Consensus 26 l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~- 98 (308)
T 1h6u_A 26 AGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK- 98 (308)
T ss_dssp TTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-
T ss_pred hCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-
Confidence 3444444332 24568899999999999984 45 68899999999999999995444 899999999999999998
Q ss_pred cCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccccccCC
Q 043041 85 EIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGG 164 (395)
Q Consensus 85 ~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~ 164 (395)
.++ .+. .+++|++|++++|++++. + .+..+++|++|++++|.+++..+ +
T Consensus 99 ~~~-~~~-~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l------------------------- 147 (308)
T 1h6u_A 99 NVS-AIA-GLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--L------------------------- 147 (308)
T ss_dssp CCG-GGT-TCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--G-------------------------
T ss_pred Cch-hhc-CCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--c-------------------------
Confidence 666 344 599999999999999864 3 38999999999999999986533 2
Q ss_pred ccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCC
Q 043041 165 LQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSL 244 (395)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 244 (395)
..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|
T Consensus 148 --------------------------~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L 197 (308)
T 1h6u_A 148 --------------------------AGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNL 197 (308)
T ss_dssp --------------------------GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTC
T ss_pred --------------------------cCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCC
Confidence 235567999999999995443 8999999999999999985544 8899999
Q ss_pred CEEECcCCccCccCcccccCCCCCCEEeCcCCcCccc
Q 043041 245 DFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGK 281 (395)
Q Consensus 245 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 281 (395)
+.|++++|++++..+ +..+++|+.|++++|++++.
T Consensus 198 ~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 198 IEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred CEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence 999999999996553 78999999999999999863
No 83
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=4.3e-24 Score=211.56 Aligned_cols=227 Identities=26% Similarity=0.301 Sum_probs=152.2
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++|+|++|+|+ .+|. .+++|++|+|++|++++ +|. .+++|++|+|++|.+++ +|. .+++|++|++++|
T Consensus 64 ~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N 131 (622)
T 3g06_A 64 TTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGN 131 (622)
T ss_dssp SEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSS
T ss_pred cEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCC
Confidence 47899999998 5665 57889999999999884 555 67888999999998884 444 5677888888888
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccccCccCC-----------------CCCCccEEEcccCCCCCCCCccccccc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLC-----------------YLPFIQILDLSSNNIPGIIPKCFNNFT 143 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-----------------~l~~L~~L~l~~n~l~~~~~~~~~~l~ 143 (395)
.++ .+|.. +++|++|++++|++++ +|..+. .+++|+.|++++|.+++. |..+ +
T Consensus 132 ~l~-~lp~~----l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l-~~~~---~ 201 (622)
T 3g06_A 132 QLT-SLPVL----PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASL-PTLP---S 201 (622)
T ss_dssp CCS-CCCCC----CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCC-CCCC---T
T ss_pred CCC-cCCCC----CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCC-CCcc---c
Confidence 887 67653 5778888888887774 232221 114455555555555432 2222 1
Q ss_pred cchhccccccccCccccccCCccccCCCCccccceEEEeeccccc-cccccCcccEEECcCCCCccCCChhhhcCcCCCE
Q 043041 144 AMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQ-YQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIA 222 (395)
Q Consensus 144 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 222 (395)
+|+.+..... .+...+........+.+.+.... ....+++|+.|++++|.++ .+|. .+++|+.
T Consensus 202 ~L~~L~L~~N------------~l~~l~~~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~ 265 (622)
T 3g06_A 202 ELYKLWAYNN------------RLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLT-SLPM---LPSGLLS 265 (622)
T ss_dssp TCCEEECCSS------------CCSSCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCC---CCTTCCE
T ss_pred hhhEEECcCC------------cccccCCCCCCCCEEEccCCccCcCCCCCCcCcEEECCCCCCC-cCCc---ccccCcE
Confidence 2222221111 11111111122223333222111 1145688999999999999 5665 6789999
Q ss_pred EeCCCCcCcccCCcccCCCCCCCEEECcCCccCccCcccccCCC
Q 043041 223 MNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLS 266 (395)
Q Consensus 223 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 266 (395)
|+|++|+++ .+|..+..+++|+.|+|++|.+++.+|..+..++
T Consensus 266 L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 266 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp EECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred EeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 999999999 7899999999999999999999998888776554
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.92 E-value=1.7e-25 Score=206.81 Aligned_cols=243 Identities=19% Similarity=0.211 Sum_probs=184.9
Q ss_pred CEEEccCCcccccCCCCccCC--CCCCEEECCCCcccccCCCCCCCCCCccEEecccccCccc-CchhccCCCCCCEEEC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLF--DRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGE-LPSSLQNCSLLILMDL 77 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~l 77 (395)
+.+|+++|.+. |..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++
T Consensus 50 ~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 50 QTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred eeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 36888888876 3445666 8899999999999876665 55789999999999998865 7788888999999999
Q ss_pred CCCcccccCchhHhhcCCCccEEEccce-eeccc-cCccCCCCCCccEEEcccC-CCCCC-CCccccccccchhcccccc
Q 043041 78 GRNALSGEIPKWIGESLPKLIVLSLMSN-KFHGI-IPFQLCYLPFIQILDLSSN-NIPGI-IPKCFNNFTAMAQEKSSVL 153 (395)
Q Consensus 78 s~n~l~~~ip~~~~~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~l~~~~~ 153 (395)
++|.+++..|..+. .+++|++|++++| .+++. ++..+..+++|++|++++| .+++. .+..
T Consensus 126 ~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--------------- 189 (336)
T 2ast_B 126 EGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA--------------- 189 (336)
T ss_dssp TTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH---------------
T ss_pred cCcccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH---------------
Confidence 99998877777776 4899999999998 67653 5666778899999999998 77642 1221
Q ss_pred ccCccccccCCccccCCCCccccceEEEeeccccccccccC-cccEEECcCC--CCc-cCCChhhhcCcCCCEEeCCCCc
Q 043041 154 SVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLG-LVKMLDLSSN--KLG-GEVPEEIMDLVGLIAMNLSRNN 229 (395)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~Ls~n--~l~-~~~p~~~~~l~~L~~L~Ls~N~ 229 (395)
+..++ +|++|++++| .++ +.+|..+..+++|+.|++++|.
T Consensus 190 ------------------------------------~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 190 ------------------------------------VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp ------------------------------------HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred ------------------------------------HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence 23456 7799999998 455 4567778889999999999998
Q ss_pred -CcccCCcccCCCCCCCEEECcCCc-cCccCcccccCCCCCCEEeCcCCcCcccCCCC--ccc-CccccccccCCCCCCC
Q 043041 230 -LTGQITPKIGQLKSLDFLDLSRNR-FFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSG--TQL-QSFNASTYAGNELCGL 304 (395)
Q Consensus 230 -l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~--~~l-~~l~~~~~~gN~lc~~ 304 (395)
+++..+..+..+++|+.|++++|. +.......+..+++|+.|++++| ++.. ..+ ..++.+++.+|.+.+.
T Consensus 234 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 234 MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCSHFTTI 308 (336)
T ss_dssp TCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCCCSCCT
T ss_pred cCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEecccCccc
Confidence 777788888999999999999995 33322235788999999999988 3332 222 2366666777766654
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.91 E-value=8.2e-24 Score=193.07 Aligned_cols=188 Identities=21% Similarity=0.339 Sum_probs=162.0
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++|++++|.++. +| .+..+++|+.|+|++|++++..+ +..+++|++|+|++|.+++ ++ .+..+++|++|++++|
T Consensus 44 ~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n 117 (308)
T 1h6u_A 44 TTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTST 117 (308)
T ss_dssp CEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTS
T ss_pred CEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCC
Confidence 579999999984 56 58999999999999999996544 9999999999999999995 44 6899999999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCcccc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYW 160 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 160 (395)
.++ .++. +. .+++|++|++++|++++..+ +..+++|++|++++|.+++..+ +.
T Consensus 118 ~l~-~~~~-l~-~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~-------------------- 170 (308)
T 1h6u_A 118 QIT-DVTP-LA-GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LA-------------------- 170 (308)
T ss_dssp CCC-CCGG-GT-TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT--------------------
T ss_pred CCC-Cchh-hc-CCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hc--------------------
Confidence 998 6765 44 69999999999999986644 8899999999999999986433 32
Q ss_pred ccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCC
Q 043041 161 FAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQ 240 (395)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 240 (395)
.+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..| +..
T Consensus 171 -------------------------------~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~ 215 (308)
T 1h6u_A 171 -------------------------------NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LAN 215 (308)
T ss_dssp -------------------------------TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTT
T ss_pred -------------------------------CCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccC
Confidence 34567999999999995443 8999999999999999996553 899
Q ss_pred CCCCCEEECcCCccCc
Q 043041 241 LKSLDFLDLSRNRFFG 256 (395)
Q Consensus 241 l~~L~~L~Ls~N~l~~ 256 (395)
+++|+.|++++|++++
T Consensus 216 l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 216 TSNLFIVTLTNQTITN 231 (308)
T ss_dssp CTTCCEEEEEEEEEEC
T ss_pred CCCCCEEEccCCeeec
Confidence 9999999999999985
No 86
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=2.8e-27 Score=228.42 Aligned_cols=152 Identities=19% Similarity=0.186 Sum_probs=112.1
Q ss_pred CEEEccCCcccccCCCCc-cCCC----CCCEEECCCCcccc----cCCCCCCCCCCccEEecccccCcccCchhcc----
Q 043041 1 MYLDLSNNLLSGRLPDCW-PLFD----RLRILDLANNNFSG----KIPDSMGSLPNIQILSLHNNSLTGELPSSLQ---- 67 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~-~~l~----~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~---- 67 (395)
++|||++|.+++..+..+ ..++ +|++|+|++|++++ .++..+..+++|++|+|++|.+++..+..+.
T Consensus 59 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 138 (461)
T 1z7x_W 59 AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL 138 (461)
T ss_dssp CEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred CEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh
Confidence 579999999986544333 2344 79999999999984 5688889999999999999998854444333
Q ss_pred -CCCCCCEEECCCCcccccC----chhHhhcCCCccEEEccceeeccccCccCC-----CCCCccEEEcccCCCCCC---
Q 043041 68 -NCSLLILMDLGRNALSGEI----PKWIGESLPKLIVLSLMSNKFHGIIPFQLC-----YLPFIQILDLSSNNIPGI--- 134 (395)
Q Consensus 68 -~l~~L~~L~ls~n~l~~~i----p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~l~~n~l~~~--- 134 (395)
..++|++|++++|.+++.. +..+. .+++|++|++++|.+....+..+. ..++|++|++++|.+++.
T Consensus 139 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 217 (461)
T 1z7x_W 139 DPQCRLEKLQLEYCSLSAASCEPLASVLR-AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR 217 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHHH-HCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH
T ss_pred cCCCcceEEECCCCCCCHHHHHHHHHHHh-hCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH
Confidence 3568999999999988533 44443 489999999999998765444443 356899999999998864
Q ss_pred -CCccccccccchhcccccc
Q 043041 135 -IPKCFNNFTAMAQEKSSVL 153 (395)
Q Consensus 135 -~~~~~~~l~~L~~l~~~~~ 153 (395)
++..+..+++|+.+.....
T Consensus 218 ~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 218 DLCGIVASKASLRELALGSN 237 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHhCCCccEEeccCC
Confidence 3556666777777765443
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=1.4e-25 Score=209.60 Aligned_cols=236 Identities=21% Similarity=0.213 Sum_probs=184.1
Q ss_pred CEEEccCCcccccCC----CCccCCC-CCCEEECCCCcccccCCCCCCCC-----CCccEEecccccCcccCchhc----
Q 043041 1 MYLDLSNNLLSGRLP----DCWPLFD-RLRILDLANNNFSGKIPDSMGSL-----PNIQILSLHNNSLTGELPSSL---- 66 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p----~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~p~~~---- 66 (395)
++|||++|.+++..+ +.+..++ +|+.|+|++|++++..+..+..+ ++|++|+|++|.+++..+..+
T Consensus 25 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 104 (362)
T 3goz_A 25 TSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTL 104 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred eEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHH
Confidence 579999999997666 7788898 99999999999998777777765 999999999999997766644
Q ss_pred cCC-CCCCEEECCCCcccccCchhHhh---c-CCCccEEEccceeeccc----cCccCCCCC-CccEEEcccCCCCCCCC
Q 043041 67 QNC-SLLILMDLGRNALSGEIPKWIGE---S-LPKLIVLSLMSNKFHGI----IPFQLCYLP-FIQILDLSSNNIPGIIP 136 (395)
Q Consensus 67 ~~l-~~L~~L~ls~n~l~~~ip~~~~~---~-l~~L~~L~L~~n~l~~~----~p~~l~~l~-~L~~L~l~~n~l~~~~~ 136 (395)
..+ ++|++|++++|.+++..+..+.. . .++|++|++++|++++. ++..+..++ +|++|++++|.+++..+
T Consensus 105 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 184 (362)
T 3goz_A 105 AAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNC 184 (362)
T ss_dssp HTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH
T ss_pred HhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhH
Confidence 444 89999999999998544444432 2 36999999999999853 334445565 99999999999987665
Q ss_pred ccccccccchhccccccccCccccccCCccccCCCCccccceEEEeecccccccccc-CcccEEECcCCCCccC----CC
Q 043041 137 KCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTL-GLVKMLDLSSNKLGGE----VP 211 (395)
Q Consensus 137 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~----~p 211 (395)
..+... +... ++|+.|+|++|.+++. ++
T Consensus 185 ~~l~~~-----------------------------------------------l~~~~~~L~~L~Ls~N~i~~~~~~~l~ 217 (362)
T 3goz_A 185 AELAKF-----------------------------------------------LASIPASVTSLDLSANLLGLKSYAELA 217 (362)
T ss_dssp HHHHHH-----------------------------------------------HHTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred HHHHHH-----------------------------------------------HHhCCCCCCEEECCCCCCChhHHHHHH
Confidence 444221 1123 3689999999999863 45
Q ss_pred hhhhc-CcCCCEEeCCCCcCcccCC----cccCCCCCCCEEECcCCccCccC-------cccccCCCCCCEEeCcCCcCc
Q 043041 212 EEIMD-LVGLIAMNLSRNNLTGQIT----PKIGQLKSLDFLDLSRNRFFGGI-------PSSLSLLSGLSVMDLSYNNLS 279 (395)
Q Consensus 212 ~~~~~-l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~-------p~~l~~l~~L~~L~Ls~N~l~ 279 (395)
..+.. .++|+.|+|++|.+++..+ ..+..+++|+.|+|++|.+.+.. +..+..+++|+.||+++|++.
T Consensus 218 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 218 YIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred HHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 55665 4599999999999986544 44578899999999999965433 345678889999999999998
Q ss_pred ccCC
Q 043041 280 GKIP 283 (395)
Q Consensus 280 ~~~p 283 (395)
+..|
T Consensus 298 ~~~~ 301 (362)
T 3goz_A 298 PSHS 301 (362)
T ss_dssp GGGC
T ss_pred Ccch
Confidence 6633
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=3.5e-26 Score=215.68 Aligned_cols=243 Identities=15% Similarity=0.153 Sum_probs=188.3
Q ss_pred cCCCCCCCCCCccEEecccccCcccCc----hhccCCCCCCEEECCCC---cccccCchhHh------hcCCCccEEEcc
Q 043041 37 KIPDSMGSLPNIQILSLHNNSLTGELP----SSLQNCSLLILMDLGRN---ALSGEIPKWIG------ESLPKLIVLSLM 103 (395)
Q Consensus 37 ~~p~~~~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~ls~n---~l~~~ip~~~~------~~l~~L~~L~L~ 103 (395)
.++..+..+++|++|+|++|.+++..+ ..+..+++|++|++++| ++.+.+|..+. ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 466677889999999999999986533 44778999999999996 55566776662 368999999999
Q ss_pred ceeecc----ccCccCCCCCCccEEEcccCCCCCCCCccccc----c---------ccchhccccccccCccccccCCcc
Q 043041 104 SNKFHG----IIPFQLCYLPFIQILDLSSNNIPGIIPKCFNN----F---------TAMAQEKSSVLSVTSEYWFAGGLQ 166 (395)
Q Consensus 104 ~n~l~~----~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~----l---------~~L~~l~~~~~~~~~~~~~~~~~~ 166 (395)
+|.+.+ .+|..+..+++|++|++++|.+++..+..+.. + ++|+.+.........
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~--------- 173 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN--------- 173 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG---------
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc---------
Confidence 999987 47778889999999999999997554444433 2 566555543222210
Q ss_pred ccCCCCccccceEEEeecccc---ccccccCcccEEECcCCCCcc-----CCChhhhcCcCCCEEeCCCCcCc----ccC
Q 043041 167 LTTAGDFFSGQAVLTWKGSQY---QYQNTLGLVKMLDLSSNKLGG-----EVPEEIMDLVGLIAMNLSRNNLT----GQI 234 (395)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~L~~L~Ls~n~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~----~~~ 234 (395)
+..+ ..+..+++|+.|++++|.++. ..|..+..+++|+.|+|++|.++ +.+
T Consensus 174 -----------------~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l 236 (386)
T 2ca6_A 174 -----------------GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 236 (386)
T ss_dssp -----------------GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH
Confidence 1111 234567899999999999983 34447889999999999999996 578
Q ss_pred CcccCCCCCCCEEECcCCccCcc----Cccccc--CCCCCCEEeCcCCcCcc----cCCCC--cccCccccccccCCCCC
Q 043041 235 TPKIGQLKSLDFLDLSRNRFFGG----IPSSLS--LLSGLSVMDLSYNNLSG----KIPSG--TQLQSFNASTYAGNELC 302 (395)
Q Consensus 235 p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~--~l~~L~~L~Ls~N~l~~----~~p~~--~~l~~l~~~~~~gN~lc 302 (395)
|..+..+++|+.|+|++|.+++. +|..+. .+++|+.|++++|.+++ .+|.. ..++++..+++.+|.+.
T Consensus 237 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 88899999999999999999876 566664 49999999999999998 46654 34688999999999776
Q ss_pred CCC
Q 043041 303 GLP 305 (395)
Q Consensus 303 ~~~ 305 (395)
+..
T Consensus 317 ~~~ 319 (386)
T 2ca6_A 317 EED 319 (386)
T ss_dssp TTS
T ss_pred cch
Confidence 543
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.91 E-value=1e-23 Score=196.02 Aligned_cols=240 Identities=18% Similarity=0.145 Sum_probs=154.4
Q ss_pred EEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCc-hhccCCCCCCE-EECCC
Q 043041 2 YLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELP-SSLQNCSLLIL-MDLGR 79 (395)
Q Consensus 2 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~-L~ls~ 79 (395)
.++.++++++ .+|..+. ++++.|+|++|+|+...+.+|+++++|++|+|++|.+.+.+| .+|.+++++++ +.++.
T Consensus 13 ~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4667778887 6676653 578888888888886555678888888888888888765444 46777777665 55666
Q ss_pred CcccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEccc-CCCCCCCCccccccccchhccccccccCcc
Q 043041 80 NALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSS-NNIPGIIPKCFNNFTAMAQEKSSVLSVTSE 158 (395)
Q Consensus 80 n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~ 158 (395)
|+++ .++...+..+++|++|++++|++....+..+.....+..|++.+ +.+....+..|..+.
T Consensus 90 N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~--------------- 153 (350)
T 4ay9_X 90 NNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS--------------- 153 (350)
T ss_dssp TTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB---------------
T ss_pred Cccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc---------------
Confidence 7787 67666665688888888888888766666666667777777755 455544444443322
Q ss_pred ccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCC-CcCcccCCcc
Q 043041 159 YWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSR-NNLTGQITPK 237 (395)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~ 237 (395)
..++.|++++|+++ .+|......++|+.|++++ |.++...+..
T Consensus 154 -----------------------------------~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~ 197 (350)
T 4ay9_X 154 -----------------------------------FESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDV 197 (350)
T ss_dssp -----------------------------------SSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTT
T ss_pred -----------------------------------hhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHH
Confidence 23466777777777 3444444556677777764 4555333345
Q ss_pred cCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCCcccCccccccccCC
Q 043041 238 IGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSGTQLQSFNASTYAGN 299 (395)
Q Consensus 238 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~l~~l~~~~~~gN 299 (395)
|..+++|+.|||++|+|+. +|. ..+.+|+.|.+.++.--..+|....+.+|..+++..+
T Consensus 198 f~~l~~L~~LdLs~N~l~~-lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 198 FHGASGPVILDISRTRIHS-LPS--YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp TTTEECCSEEECTTSCCCC-CCS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred hccCcccchhhcCCCCcCc-cCh--hhhccchHhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence 6777777777777777773 333 2244555555544433335565555666655555433
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=2.6e-25 Score=205.67 Aligned_cols=229 Identities=18% Similarity=0.205 Sum_probs=184.5
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCccccc-CCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGK-IPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGR 79 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~ 79 (395)
+.|++++|.+++..+. +..+++|+.|++++|.+++. ++..+..+++|++|+|++|.+++..+..+..+++|++|++++
T Consensus 73 ~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~ 151 (336)
T 2ast_B 73 IAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 151 (336)
T ss_dssp SEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred eEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCC
Confidence 4789999999977666 56799999999999999866 888899999999999999999988899999999999999999
Q ss_pred C-ccccc-CchhHhhcCCCccEEEccce-eeccc-cCccCCCCC-CccEEEcccCC--CCC-CCCccccccccchhcccc
Q 043041 80 N-ALSGE-IPKWIGESLPKLIVLSLMSN-KFHGI-IPFQLCYLP-FIQILDLSSNN--IPG-IIPKCFNNFTAMAQEKSS 151 (395)
Q Consensus 80 n-~l~~~-ip~~~~~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~-~L~~L~l~~n~--l~~-~~~~~~~~l~~L~~l~~~ 151 (395)
| .+++. ++..+. .+++|++|++++| .+++. ++..+..++ +|++|++++|. +++ .++.
T Consensus 152 ~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~-------------- 216 (336)
T 2ast_B 152 CSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST-------------- 216 (336)
T ss_dssp CBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH--------------
T ss_pred CCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH--------------
Confidence 9 67753 555555 6999999999999 88864 567788899 99999999994 431 1111
Q ss_pred ccccCccccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCC-CccCCChhhhcCcCCCEEeCCCCc-
Q 043041 152 VLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNK-LGGEVPEEIMDLVGLIAMNLSRNN- 229 (395)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~N~- 229 (395)
.+..+++|+.|++++|. +++..+..+..+++|+.|++++|.
T Consensus 217 -------------------------------------~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 259 (336)
T 2ast_B 217 -------------------------------------LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD 259 (336)
T ss_dssp -------------------------------------HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred -------------------------------------HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence 22456778999999999 777888899999999999999995
Q ss_pred CcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCCC
Q 043041 230 LTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPSG 285 (395)
Q Consensus 230 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 285 (395)
+.......++.+++|+.|++++| ++...-..+. ..+..|++++|++++..|..
T Consensus 260 ~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 260 IIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSS
T ss_pred CCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCc
Confidence 44333346888999999999999 5433222222 23666778999999988864
No 91
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.90 E-value=2.4e-23 Score=179.02 Aligned_cols=128 Identities=19% Similarity=0.216 Sum_probs=65.6
Q ss_pred EEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCc
Q 043041 2 YLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNA 81 (395)
Q Consensus 2 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~ 81 (395)
.++.+++.++ .+|..+ .++|+.|++++|++++..+..|+.+++|++|++++|++++..+..|..+++|++|++++|.
T Consensus 11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 3455555554 344333 2355666666666654444455555566666666665554444445555555555555555
Q ss_pred ccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCC
Q 043041 82 LSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPG 133 (395)
Q Consensus 82 l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 133 (395)
++ .+|...+..+++|++|++++|++++..+..+..+++|++|++++|.+++
T Consensus 88 l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 138 (208)
T 2o6s_A 88 LQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS 138 (208)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce
Confidence 55 4444333345555555555555554444444444444444444444443
No 92
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.90 E-value=5.6e-26 Score=219.22 Aligned_cols=298 Identities=18% Similarity=0.102 Sum_probs=198.4
Q ss_pred CEEEccCCcccc----cCCCCccCCCCCCEEECCCCcccccCCCCC-CCCC----CccEEecccccCcc----cCchhcc
Q 043041 1 MYLDLSNNLLSG----RLPDCWPLFDRLRILDLANNNFSGKIPDSM-GSLP----NIQILSLHNNSLTG----ELPSSLQ 67 (395)
Q Consensus 1 ~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~----~L~~L~L~~n~l~~----~~p~~~~ 67 (395)
++|+|++|.+++ .++..+..+++|++|+|++|.+++..+..+ ..++ +|++|+|++|.++. .++..+.
T Consensus 31 ~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 110 (461)
T 1z7x_W 31 QVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR 110 (461)
T ss_dssp SEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTT
T ss_pred cEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHc
Confidence 579999999985 356778889999999999999986544333 2344 79999999999984 5688899
Q ss_pred CCCCCCEEECCCCcccccCchhHhh----cCCCccEEEccceeeccc----cCccCCCCCCccEEEcccCCCCCCCCccc
Q 043041 68 NCSLLILMDLGRNALSGEIPKWIGE----SLPKLIVLSLMSNKFHGI----IPFQLCYLPFIQILDLSSNNIPGIIPKCF 139 (395)
Q Consensus 68 ~l~~L~~L~ls~n~l~~~ip~~~~~----~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~~~~~~ 139 (395)
.+++|++|++++|.+++..+..+.. ..++|++|++++|++++. ++..+..+++|++|++++|.+.+..+..+
T Consensus 111 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 190 (461)
T 1z7x_W 111 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVL 190 (461)
T ss_dssp SCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH
T ss_pred cCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHH
Confidence 9999999999999998554544443 256799999999999864 35566778999999999999876544444
Q ss_pred cc-----cccchhccccccccCccccccCCccccCCCCccccceEEEeeccc----------cccccccCcccEEECcCC
Q 043041 140 NN-----FTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQ----------YQYQNTLGLVKMLDLSSN 204 (395)
Q Consensus 140 ~~-----l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~L~~L~Ls~n 204 (395)
.. .++|+.+............. .++..-........+.+.+.. ......+++|+.|++++|
T Consensus 191 ~~~l~~~~~~L~~L~L~~n~l~~~~~~----~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 191 CQGLKDSPCQLEALKLESCGVTSDNCR----DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHSCCCCCEEECTTSCCBTTHHH----HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHhcCCCCceEEEccCCCCcHHHHH----HHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 32 34666666544333221000 000000000111122222111 111224678888888888
Q ss_pred CCccC----CChhhhcCcCCCEEeCCCCcCcccCCcccC-----CCCCCCEEECcCCccCcc----CcccccCCCCCCEE
Q 043041 205 KLGGE----VPEEIMDLVGLIAMNLSRNNLTGQITPKIG-----QLKSLDFLDLSRNRFFGG----IPSSLSLLSGLSVM 271 (395)
Q Consensus 205 ~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L 271 (395)
.+++. ++..+..+++|+.|++++|.+++..+..+. ..++|+.|++++|.+++. ++..+..+++|+.|
T Consensus 267 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 346 (461)
T 1z7x_W 267 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 346 (461)
T ss_dssp CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEE
T ss_pred CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEE
Confidence 88754 566677788888888888888654443332 236888888888888765 45566677888888
Q ss_pred eCcCCcCcccCCCC-c-----ccCccccccccCCCCC
Q 043041 272 DLSYNNLSGKIPSG-T-----QLQSFNASTYAGNELC 302 (395)
Q Consensus 272 ~Ls~N~l~~~~p~~-~-----~l~~l~~~~~~gN~lc 302 (395)
++++|.+++..+.. . ...++..+++.+|.+.
T Consensus 347 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 347 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred EccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 88888877543221 0 1346677777777554
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.89 E-value=1.1e-22 Score=174.72 Aligned_cols=174 Identities=21% Similarity=0.247 Sum_probs=95.4
Q ss_pred CEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCCCccEEEccc
Q 043041 25 RILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMS 104 (395)
Q Consensus 25 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L~~ 104 (395)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|+++ .+|...+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCC
Confidence 34555555555 334333 245666666666665444444555566666666666555 44444333455555555555
Q ss_pred eeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccccccCCccccCCCCccccceEEEeec
Q 043041 105 NKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKG 184 (395)
Q Consensus 105 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (395)
|++++..+..+..+++|
T Consensus 86 n~l~~~~~~~~~~l~~L--------------------------------------------------------------- 102 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQL--------------------------------------------------------------- 102 (208)
T ss_dssp SCCCCCCTTTTTTCTTC---------------------------------------------------------------
T ss_pred CcCCccCHhHhcCccCC---------------------------------------------------------------
Confidence 55544333334444444
Q ss_pred cccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCccCcccccC
Q 043041 185 SQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSL 264 (395)
Q Consensus 185 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 264 (395)
++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+ .
T Consensus 103 ------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~ 163 (208)
T 2o6s_A 103 ------------KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------T 163 (208)
T ss_dssp ------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------C
T ss_pred ------------CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------C
Confidence 445555555554444445556666666666666665445456666666666666665542 3
Q ss_pred CCCCCEEeCcCCcCcccCCC
Q 043041 265 LSGLSVMDLSYNNLSGKIPS 284 (395)
Q Consensus 265 l~~L~~L~Ls~N~l~~~~p~ 284 (395)
++.|+.|+++.|+++|.+|.
T Consensus 164 ~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 164 CPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp TTTTHHHHHHHHHCTTTBBC
T ss_pred CCCHHHHHHHHHhCCceeec
Confidence 44566666667777766664
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.89 E-value=1.4e-22 Score=198.32 Aligned_cols=182 Identities=25% Similarity=0.385 Sum_probs=144.3
Q ss_pred CCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCCCccEEEc
Q 043041 23 RLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSL 102 (395)
Q Consensus 23 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L 102 (395)
+|+.|+|++|++++ +|..+. ++|++|+|++|.++ .+| ..+++|++|++++|.++ .+|. +. .+|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~ip~-l~---~~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPE-LP---ASLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC-CC---TTCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC-Ccch-hh---cCCCEEEC
Confidence 88999999999886 676553 78999999999998 566 45788999999999998 5887 43 28999999
Q ss_pred cceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccccccCCccccCCCCccccceEEEe
Q 043041 103 MSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTW 182 (395)
Q Consensus 103 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (395)
++|++++ +|. .+++|++|++++|.+++ +|. .
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~----------------------------------------- 158 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---L----------------------------------------- 158 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---C-----------------------------------------
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---c-----------------------------------------
Confidence 9999886 555 57889999999998876 332 1
Q ss_pred eccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCC-------CEEECcCCccC
Q 043041 183 KGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSL-------DFLDLSRNRFF 255 (395)
Q Consensus 183 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------~~L~Ls~N~l~ 255 (395)
+++|+.|+|++|.+++ +|. +. ++|+.|+|++|.|+ .+|. +.. +| +.|+|++|+|+
T Consensus 159 ----------l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~ 220 (571)
T 3cvr_A 159 ----------PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT 220 (571)
T ss_dssp ----------CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC
T ss_pred ----------CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce
Confidence 2346889999999985 666 55 88999999999998 6666 554 67 99999999998
Q ss_pred ccCcccccCCCCCCEEeCcCCcCcccCCC
Q 043041 256 GGIPSSLSLLSGLSVMDLSYNNLSGKIPS 284 (395)
Q Consensus 256 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 284 (395)
.+|..+..+++|+.|++++|++++.+|.
T Consensus 221 -~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 221 -HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp -CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred -ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 5787777899999999999999887774
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.88 E-value=2.9e-22 Score=196.18 Aligned_cols=187 Identities=25% Similarity=0.347 Sum_probs=157.6
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
+.|+|++|.+++ +|..+. ++|+.|+|++|+++ .+| +.+++|++|+|++|.+++ +|. +.+ +|++|++++|
T Consensus 62 ~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 62 SELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp SEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSS
T ss_pred cEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCC
Confidence 479999999996 777663 89999999999999 577 457999999999999996 676 655 9999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCcccc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYW 160 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 160 (395)
.++ .+|. .+++|++|++++|++++ +|. .+++|++|++++|.+++ +|. |.
T Consensus 131 ~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~-------------------- 179 (571)
T 3cvr_A 131 QLT-MLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP-------------------- 179 (571)
T ss_dssp CCS-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--------------------
T ss_pred cCC-CCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--------------------
Confidence 999 5887 38999999999999996 565 57899999999999987 443 32
Q ss_pred ccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCC-------CEEeCCCCcCccc
Q 043041 161 FAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGL-------IAMNLSRNNLTGQ 233 (395)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L-------~~L~Ls~N~l~~~ 233 (395)
++|+.|+|++|.|+ .+|. +.. +| +.|+|++|.|+ .
T Consensus 180 ---------------------------------~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~ 221 (571)
T 3cvr_A 180 ---------------------------------ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-H 221 (571)
T ss_dssp ---------------------------------TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-C
T ss_pred ---------------------------------CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-e
Confidence 24699999999999 6666 554 77 99999999999 6
Q ss_pred CCcccCCCCCCCEEECcCCccCccCcccccCCCC
Q 043041 234 ITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSG 267 (395)
Q Consensus 234 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 267 (395)
+|..+..+++|+.|+|++|.+++.+|..+..++.
T Consensus 222 lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 222 IPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 8888888999999999999999999988776543
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.88 E-value=4.2e-22 Score=185.10 Aligned_cols=220 Identities=20% Similarity=0.242 Sum_probs=171.9
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCC-CCCCCCCCccE-EecccccCcccCchhccCCCCCCEEECC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIP-DSMGSLPNIQI-LSLHNNSLTGELPSSLQNCSLLILMDLG 78 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~-L~L~~n~l~~~~p~~~~~l~~L~~L~ls 78 (395)
++|+|++|+|+.+.+++|.++++|+.|+|++|++.+.+| .+|.++++++. +.++.|+++...|..|..+++|++|+++
T Consensus 33 ~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~ 112 (350)
T 4ay9_X 33 IELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 112 (350)
T ss_dssp SEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEE
T ss_pred CEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccc
Confidence 579999999996666789999999999999999876665 57899998775 6777899998888999999999999999
Q ss_pred CCcccccCchhHhhcCCCccEEEccc-eeeccccCccCCCCC-CccEEEcccCCCCCCCCccccccccchhccccccccC
Q 043041 79 RNALSGEIPKWIGESLPKLIVLSLMS-NKFHGIIPFQLCYLP-FIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVT 156 (395)
Q Consensus 79 ~n~l~~~ip~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~ 156 (395)
+|++. .+|...+....++..|++.+ +++....+..|..+. .++.|++++|+++.+.+..|..
T Consensus 113 ~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~--------------- 176 (350)
T 4ay9_X 113 NTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG--------------- 176 (350)
T ss_dssp EECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTT---------------
T ss_pred ccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccc---------------
Confidence 99998 67765554567788898865 577766666777764 6899999999998655544422
Q ss_pred ccccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcC-CCCccCCChhhhcCcCCCEEeCCCCcCcccCC
Q 043041 157 SEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSS-NKLGGEVPEEIMDLVGLIAMNLSRNNLTGQIT 235 (395)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 235 (395)
.+|+.+++++ |.++...+..|..+++|+.|+|++|+|+ .+|
T Consensus 177 -------------------------------------~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp 218 (350)
T 4ay9_X 177 -------------------------------------TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLP 218 (350)
T ss_dssp -------------------------------------EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCC
T ss_pred -------------------------------------cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccC
Confidence 2357888875 6677444567899999999999999998 444
Q ss_pred cccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCc
Q 043041 236 PKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNN 277 (395)
Q Consensus 236 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 277 (395)
.. .+.+|+.|.+.++.-...+|. +..+++|+.++++++.
T Consensus 219 ~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 219 SY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPS 257 (350)
T ss_dssp SS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCHH
T ss_pred hh--hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCCc
Confidence 42 356677777666544446774 7889999999998653
No 97
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.87 E-value=2.2e-22 Score=174.43 Aligned_cols=157 Identities=24% Similarity=0.243 Sum_probs=115.8
Q ss_pred CEEECCCCcccccCchhHhhcCCCccEEEccceeeccccC-ccCCCCCCccEEEcccCCCCCCCCccccccccchhcccc
Q 043041 73 ILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIP-FQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSS 151 (395)
Q Consensus 73 ~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~ 151 (395)
+++++++|.++ .+|..+. +.+++|++++|++++..+ ..|..+++|++|++++|.+++..+..|..+
T Consensus 14 ~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l--------- 80 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA--------- 80 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTC---------
T ss_pred CEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCC---------
Confidence 46666666666 5665543 345667777777665543 346667777777777777766555554433
Q ss_pred ccccCccccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCc
Q 043041 152 VLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLT 231 (395)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 231 (395)
++|++|+|++|.+++..+..|..+++|++|+|++|.++
T Consensus 81 ------------------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 118 (220)
T 2v70_A 81 ------------------------------------------SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 118 (220)
T ss_dssp ------------------------------------------TTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCC
T ss_pred ------------------------------------------CCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCC
Confidence 33477777778777677777888888888888888888
Q ss_pred ccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCC
Q 043041 232 GQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPS 284 (395)
Q Consensus 232 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 284 (395)
+..|..|..+++|+.|+|++|++++..|..+..+++|+.|++++|++++.++.
T Consensus 119 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 119 CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 87788888888899999999988887788888888999999999998877653
No 98
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.86 E-value=2.1e-21 Score=181.20 Aligned_cols=179 Identities=27% Similarity=0.270 Sum_probs=144.1
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCC-CCCCccEEecccccCcccCchhccCCCCCCEEECCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMG-SLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGR 79 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~ 79 (395)
+.+++++|+++ .+|..+. +.++.|+|++|++++..+..|. ++++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 36888999998 5777654 4688999999999988777787 899999999999999977778899999999999999
Q ss_pred CcccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccc
Q 043041 80 NALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEY 159 (395)
Q Consensus 80 n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 159 (395)
|+++ .++...+..+++|++|+|++|++++..|..|..+++|++|++++|.+++..+..|..+
T Consensus 98 N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~----------------- 159 (361)
T 2xot_A 98 NHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG----------------- 159 (361)
T ss_dssp SCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC-------------------
T ss_pred CcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCc-----------------
Confidence 9998 7777666678999999999999998888889999999999999999886554443221
Q ss_pred cccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcC--CCEEeCCCCcCc
Q 043041 160 WFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVG--LIAMNLSRNNLT 231 (395)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~--L~~L~Ls~N~l~ 231 (395)
..+++|+.|+|++|++++..+..+..++. ++.|+|++|.+.
T Consensus 160 -------------------------------~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 160 -------------------------------NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ---------------------------------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred -------------------------------ccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 23456788999999998666667777776 478888888875
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.86 E-value=3.4e-21 Score=166.86 Aligned_cols=139 Identities=22% Similarity=0.295 Sum_probs=126.4
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
+.++++++.++ .+|..+. ++|+.|+|++|++++..+..|..+++|++|+|++|.+++..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 36899999998 6777665 78999999999999888889999999999999999999888999999999999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFT 143 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 143 (395)
.++ .+|..++.++++|++|++++|++++..|..|..+++|++|++++|.+++..+..|..++
T Consensus 91 ~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 152 (220)
T 2v9t_B 91 KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152 (220)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred cCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCC
Confidence 999 89988877899999999999999999999999999999999999999987776665443
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.86 E-value=1.2e-21 Score=169.73 Aligned_cols=155 Identities=22% Similarity=0.268 Sum_probs=114.7
Q ss_pred CEEECCCCcccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccc
Q 043041 73 ILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSV 152 (395)
Q Consensus 73 ~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~ 152 (395)
+.++++++.++ .+|..+. ++|+.|++++|++++..+..|..+++|++|++++|.+++..|..|..+
T Consensus 14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l---------- 79 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL---------- 79 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTC----------
T ss_pred CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCC----------
Confidence 45667777776 6666543 567777777777776666677777777777777777776666555443
Q ss_pred cccCccccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcc
Q 043041 153 LSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTG 232 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 232 (395)
++|++|+|++|.++...+..|..+++|+.|+|++|.+++
T Consensus 80 -----------------------------------------~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~ 118 (220)
T 2v9t_B 80 -----------------------------------------RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC 118 (220)
T ss_dssp -----------------------------------------SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred -----------------------------------------cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCE
Confidence 334777777777775555567778888888888888887
Q ss_pred cCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccC
Q 043041 233 QITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKI 282 (395)
Q Consensus 233 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 282 (395)
..|..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+..
T Consensus 119 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 119 LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence 77888888888888888888888777777888888888888888887653
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.86 E-value=1.3e-21 Score=176.93 Aligned_cols=172 Identities=24% Similarity=0.292 Sum_probs=105.7
Q ss_pred CCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCcc
Q 043041 43 GSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQ 122 (395)
Q Consensus 43 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 122 (395)
..+++|+.|++++|.++. ++ .+..+++|++|++++|.++ .++. +. .+++|++|++++|++++. + .+..+++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~ 115 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT-DIKP-LA-NLKNLGWLFLDENKVKDL-S-SLKDLKKLK 115 (291)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCCG-G-GGTTCTTCC
T ss_pred hhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccC-CCcc-cc-cCCCCCEEECCCCcCCCC-h-hhccCCCCC
Confidence 345566666666666653 22 3556666666666666665 4444 32 466666666666666542 2 366666667
Q ss_pred EEEcccCCCCCCCCccccccccchhccccccccCccccccCCccccCCCCccccceEEEeeccccccccccCcccEEECc
Q 043041 123 ILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLS 202 (395)
Q Consensus 123 ~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 202 (395)
+|++++|.+++. ..+ ..+++|+.|+++
T Consensus 116 ~L~L~~n~i~~~--~~l---------------------------------------------------~~l~~L~~L~l~ 142 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGL---------------------------------------------------VHLPQLESLYLG 142 (291)
T ss_dssp EEECTTSCCCCC--GGG---------------------------------------------------GGCTTCCEEECC
T ss_pred EEECCCCcCCCC--hhh---------------------------------------------------cCCCCCCEEEcc
Confidence 777766666542 111 123445677777
Q ss_pred CCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcc
Q 043041 203 SNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSG 280 (395)
Q Consensus 203 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 280 (395)
+|.+++. ..+..+++|+.|++++|.+++..| +..+++|+.|++++|.+++ +|. +..+++|+.|++++|+++.
T Consensus 143 ~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 143 NNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp SSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCSEEEEEEEEEEC
T ss_pred CCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Chh-hccCCCCCEEECcCCcccC
Confidence 7777643 456677777777777777765444 6777777777777777764 333 6677777777777777764
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.85 E-value=9.6e-21 Score=171.23 Aligned_cols=185 Identities=26% Similarity=0.371 Sum_probs=153.1
Q ss_pred ccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccc
Q 043041 5 LSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSG 84 (395)
Q Consensus 5 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~ 84 (395)
+..+.+++.. .+..+++|+.|++++|.+.+. + .++.+++|++|++++|.+++..+ +..+++|++|++++|.++
T Consensus 31 l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~- 103 (291)
T 1h6t_A 31 LKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK- 103 (291)
T ss_dssp TTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-
T ss_pred hcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-
Confidence 4455555332 246789999999999999854 4 48899999999999999996544 999999999999999998
Q ss_pred cCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccccccCC
Q 043041 85 EIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGG 164 (395)
Q Consensus 85 ~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~ 164 (395)
.+|. +. .+++|++|++++|++++. ..+..+++|++|++++|.+++. ..+
T Consensus 104 ~~~~-l~-~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l------------------------- 152 (291)
T 1h6t_A 104 DLSS-LK-DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVL------------------------- 152 (291)
T ss_dssp CGGG-GT-TCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGG-------------------------
T ss_pred CChh-hc-cCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhh-------------------------
Confidence 6665 44 699999999999999864 4688999999999999999864 222
Q ss_pred ccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCC
Q 043041 165 LQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSL 244 (395)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 244 (395)
..+++|+.|++++|++++..| +..+++|+.|++++|.+++ +| .+..+++|
T Consensus 153 --------------------------~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L 202 (291)
T 1h6t_A 153 --------------------------SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNL 202 (291)
T ss_dssp --------------------------GGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTC
T ss_pred --------------------------ccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCC
Confidence 235667999999999996555 8999999999999999985 44 48999999
Q ss_pred CEEECcCCccCcc
Q 043041 245 DFLDLSRNRFFGG 257 (395)
Q Consensus 245 ~~L~Ls~N~l~~~ 257 (395)
+.|++++|+++..
T Consensus 203 ~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 203 DVLELFSQECLNK 215 (291)
T ss_dssp SEEEEEEEEEECC
T ss_pred CEEECcCCcccCC
Confidence 9999999999853
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.85 E-value=2.5e-21 Score=180.61 Aligned_cols=109 Identities=24% Similarity=0.266 Sum_probs=59.7
Q ss_pred CEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhcc-CCCCCCEEECCCCcccccCchhHhhcCCCccEEEcc
Q 043041 25 RILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQ-NCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLM 103 (395)
Q Consensus 25 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L~ 103 (395)
+.+++++++++ .+|..+. +.++.|+|++|++++..+..+. ++++|++|++++|.++ .++...+..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECC
Confidence 45666666665 3454443 3456666666666655555554 5666666666666665 4443333345555555555
Q ss_pred ceeeccccCccCCCCCCccEEEcccCCCCCCCCc
Q 043041 104 SNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPK 137 (395)
Q Consensus 104 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~ 137 (395)
+|++++..+..|..+++|++|++++|.+++..+.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~ 130 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN 130 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHH
Confidence 5555554444555555555555555555443333
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.85 E-value=2.8e-21 Score=191.18 Aligned_cols=187 Identities=22% Similarity=0.265 Sum_probs=91.2
Q ss_pred EEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCCCccEEEccce
Q 043041 26 ILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSN 105 (395)
Q Consensus 26 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L~~n 105 (395)
.+.+..+.+.+..+ +..+++|+.|++++|.++. ++ .+..+++|++|+|++|.+. .++. +. .+++|+.|+|++|
T Consensus 25 ~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~-~~~~-l~-~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 25 KDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT-DIKP-LT-NLKNLGWLFLDEN 97 (605)
T ss_dssp HHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCC-CCGG-GG-GCTTCCEEECCSS
T ss_pred HHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCC-CChh-hc-cCCCCCEEECcCC
Confidence 33444444443222 3344555555555555542 22 3455555555555555555 3333 22 3555555555555
Q ss_pred eeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccccccCCccccCCCCccccceEEEeecc
Q 043041 106 KFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGS 185 (395)
Q Consensus 106 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (395)
.+.+ +| .+..+++|+.|++++|.+.+. ..+
T Consensus 98 ~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l---------------------------------------------- 127 (605)
T 1m9s_A 98 KIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGL---------------------------------------------- 127 (605)
T ss_dssp CCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGG----------------------------------------------
T ss_pred CCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccc----------------------------------------------
Confidence 5543 12 455555555555555555431 111
Q ss_pred ccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCccCcccccCC
Q 043041 186 QYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLL 265 (395)
Q Consensus 186 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 265 (395)
..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|++++. | .+..+
T Consensus 128 -----~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l 196 (605)
T 1m9s_A 128 -----VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGL 196 (605)
T ss_dssp -----GGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTC
T ss_pred -----cCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHccC
Confidence 1233345555555555532 345555555555555555554433 55555555555555555532 2 34555
Q ss_pred CCCCEEeCcCCcCcc
Q 043041 266 SGLSVMDLSYNNLSG 280 (395)
Q Consensus 266 ~~L~~L~Ls~N~l~~ 280 (395)
++|+.|+|++|++++
T Consensus 197 ~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 197 KNLDVLELFSQECLN 211 (605)
T ss_dssp TTCSEEECCSEEEEC
T ss_pred CCCCEEEccCCcCcC
Confidence 555555555555554
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.85 E-value=1.4e-20 Score=163.05 Aligned_cols=141 Identities=23% Similarity=0.319 Sum_probs=123.8
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCC-CCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIP-DSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGR 79 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~ 79 (395)
+.+++++|.++ .+|..+. +.++.|+|++|++++..+ ..|..+++|++|+|++|.+++..+..|.++++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 46899999998 5787664 467899999999998755 5689999999999999999988888999999999999999
Q ss_pred CcccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccc
Q 043041 80 NALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAM 145 (395)
Q Consensus 80 n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 145 (395)
|.++ .++...+..+++|++|++++|++++..|..+..+++|++|++++|.+++..|..|..+++|
T Consensus 91 N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 155 (220)
T 2v70_A 91 NRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155 (220)
T ss_dssp SCCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTC
T ss_pred CccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCC
Confidence 9999 6776666679999999999999999999999999999999999999998888777554433
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.85 E-value=1.4e-20 Score=164.00 Aligned_cols=157 Identities=23% Similarity=0.210 Sum_probs=129.3
Q ss_pred CCEEECCCCcccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhcccc
Q 043041 72 LILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSS 151 (395)
Q Consensus 72 L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~ 151 (395)
.+.++.+++.++ .+|..+. ++|++|++++|++++..|..+..+++|++|++++|+++...+..|..
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~---------- 86 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS---------- 86 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----------
T ss_pred CCEeEccCCCcC-ccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc----------
Confidence 567888888887 7887653 78888888888888877888888888888888888887655555443
Q ss_pred ccccCccccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCc
Q 043041 152 VLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLT 231 (395)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 231 (395)
+++|+.|+|++|++++..+..|..+++|+.|+|++|+++
T Consensus 87 -----------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~ 125 (229)
T 3e6j_A 87 -----------------------------------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT 125 (229)
T ss_dssp -----------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred -----------------------------------------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc
Confidence 344588889999988777777888999999999999998
Q ss_pred ccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcccCCC
Q 043041 232 GQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGKIPS 284 (395)
Q Consensus 232 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 284 (395)
.+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++++..+.
T Consensus 126 -~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 177 (229)
T 3e6j_A 126 -ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD 177 (229)
T ss_dssp -SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred -ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence 7888889999999999999999977777788999999999999999987664
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.84 E-value=2.3e-20 Score=184.58 Aligned_cols=189 Identities=26% Similarity=0.356 Sum_probs=158.2
Q ss_pred EccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCccc
Q 043041 4 DLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALS 83 (395)
Q Consensus 4 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~ 83 (395)
.++.+.+.+..+ +..+++|+.|++++|.+.. ++ .++.+++|+.|+|++|.+++..| +..+++|++|+|++|.+.
T Consensus 27 ~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~ 100 (605)
T 1m9s_A 27 NLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK 100 (605)
T ss_dssp HTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred hccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC
Confidence 456666664443 5678999999999999984 44 58999999999999999996554 899999999999999998
Q ss_pred ccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccccccC
Q 043041 84 GEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAG 163 (395)
Q Consensus 84 ~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~ 163 (395)
.+| .+. .+++|++|+|++|++.+. ..+..+++|+.|++++|.+++. ..+
T Consensus 101 -~l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l------------------------ 149 (605)
T 1m9s_A 101 -DLS-SLK-DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVL------------------------ 149 (605)
T ss_dssp -CCT-TST-TCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGG------------------------
T ss_pred -CCh-hhc-cCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhh------------------------
Confidence 666 444 699999999999999863 4588999999999999999864 222
Q ss_pred CccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCC
Q 043041 164 GLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKS 243 (395)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 243 (395)
..+++|+.|+|++|.+++..| +..+++|+.|+|++|.+++. +.+..+++
T Consensus 150 ---------------------------~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~ 198 (605)
T 1m9s_A 150 ---------------------------SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKN 198 (605)
T ss_dssp ---------------------------GSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTT
T ss_pred ---------------------------cccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCC
Confidence 235667999999999997666 89999999999999999864 46899999
Q ss_pred CCEEECcCCccCccCcc
Q 043041 244 LDFLDLSRNRFFGGIPS 260 (395)
Q Consensus 244 L~~L~Ls~N~l~~~~p~ 260 (395)
|+.|+|++|++++....
T Consensus 199 L~~L~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 199 LDVLELFSQECLNKPIN 215 (605)
T ss_dssp CSEEECCSEEEECCCCC
T ss_pred CCEEEccCCcCcCCccc
Confidence 99999999999865433
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=5.5e-20 Score=160.28 Aligned_cols=138 Identities=25% Similarity=0.334 Sum_probs=121.5
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
+.++.+++.++ .+|..+. ++|+.|+|++|++++..|..|.++++|++|+|++|+++...+..|..+++|++|++++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 36889999997 6777665 89999999999999988999999999999999999999776777899999999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFT 143 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 143 (395)
.++ .+|...+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..++
T Consensus 99 ~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 159 (229)
T 3e6j_A 99 QLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159 (229)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred cCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCC
Confidence 999 788777667999999999999999 7788899999999999999999977665554433
No 109
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.82 E-value=1e-22 Score=200.21 Aligned_cols=179 Identities=20% Similarity=0.198 Sum_probs=128.1
Q ss_pred CCCCCccEEecccccCcccCchhccCCCCCCEEECCCCc-------------ccccCchhHhhcCCCccEEE-ccce---
Q 043041 43 GSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNA-------------LSGEIPKWIGESLPKLIVLS-LMSN--- 105 (395)
Q Consensus 43 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~-------------l~~~ip~~~~~~l~~L~~L~-L~~n--- 105 (395)
..+++|+.|+|++|+++ .+|..++++++|+.|++++|. ..+.+|..+. .+++|+.|+ ++.|
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~-~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ-YFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHH-HHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHH-HHHhcccCcchhhcccc
Confidence 34555555666666555 455555555556555555443 3334444443 356666665 3433
Q ss_pred ----------eeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccccccCCccccCCCCccc
Q 043041 106 ----------KFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFS 175 (395)
Q Consensus 106 ----------~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (395)
.++...+ ..|+.|++++|.+++. |. +..
T Consensus 424 ~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~l-p~-~~~---------------------------------- 461 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVL-CH-LEQ---------------------------------- 461 (567)
T ss_dssp HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSC-CC-GGG----------------------------------
T ss_pred hhhhhhhhcccccccCc------cCceEEEecCCCCCCC-cC-ccc----------------------------------
Confidence 3432222 2488999999999863 33 433
Q ss_pred cceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccC
Q 043041 176 GQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFF 255 (395)
Q Consensus 176 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 255 (395)
+++|+.|+|++|.++ .+|..++.+++|+.|+|++|.+++ +| .++.+++|+.|+|++|+++
T Consensus 462 -----------------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~ 521 (567)
T 1dce_A 462 -----------------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQ 521 (567)
T ss_dssp -----------------GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCC
T ss_pred -----------------cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCC
Confidence 445689999999999 788899999999999999999995 66 8899999999999999999
Q ss_pred ccC-cccccCCCCCCEEeCcCCcCcccCCCC
Q 043041 256 GGI-PSSLSLLSGLSVMDLSYNNLSGKIPSG 285 (395)
Q Consensus 256 ~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 285 (395)
+.. |..+..+++|+.|++++|++++.+|..
T Consensus 522 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 522 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp SSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred CCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 776 888999999999999999999887754
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.81 E-value=2.1e-21 Score=190.94 Aligned_cols=197 Identities=20% Similarity=0.189 Sum_probs=126.5
Q ss_pred cCCCCCCEEECCCCcccccCCCCCCCCCCccEEeccccc-------------CcccCchhccCCCCCCEEE-CCCCcccc
Q 043041 19 PLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNS-------------LTGELPSSLQNCSLLILMD-LGRNALSG 84 (395)
Q Consensus 19 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-------------l~~~~p~~~~~l~~L~~L~-ls~n~l~~ 84 (395)
..+++|+.|+|++|+++ .+|+.++++++|+.|++++|. +.+..|..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 45667777777777776 567777777777777776654 4456666677777777777 5555443
Q ss_pred cCchhH------hh-cCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCc
Q 043041 85 EIPKWI------GE-SLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTS 157 (395)
Q Consensus 85 ~ip~~~------~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~ 157 (395)
.++... .. ....|+.|++++|++++ +|. ++.+++|+.|++++|.++ .+|..++.
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~---------------- 484 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA---------------- 484 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG----------------
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc----------------
Confidence 333211 00 02357777777777775 454 777777777777777776 44544433
Q ss_pred cccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccC-Cc
Q 043041 158 EYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQI-TP 236 (395)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~ 236 (395)
+++|+.|+|++|.+++ +| .++.+++|+.|+|++|.+++.. |.
T Consensus 485 -----------------------------------l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~ 527 (567)
T 1dce_A 485 -----------------------------------LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQ 527 (567)
T ss_dssp -----------------------------------CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTG
T ss_pred -----------------------------------CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcH
Confidence 3344777777777774 55 6777777777777777777665 77
Q ss_pred ccCCCCCCCEEECcCCccCccCcc---cccCCCCCCEEeC
Q 043041 237 KIGQLKSLDFLDLSRNRFFGGIPS---SLSLLSGLSVMDL 273 (395)
Q Consensus 237 ~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~L 273 (395)
.++.+++|+.|+|++|.+++.+|. .+..+|+|+.||+
T Consensus 528 ~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 528 PLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred HHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 777777777777777777755442 2234677777653
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.81 E-value=6.2e-20 Score=163.35 Aligned_cols=80 Identities=24% Similarity=0.343 Sum_probs=46.6
Q ss_pred ccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcC
Q 043041 196 VKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSY 275 (395)
Q Consensus 196 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 275 (395)
|+.|++++|++++ ++ .+..+++|+.|++++|++++. + .++.+++|+.|++++|++++. ..+..+++|+.|++++
T Consensus 108 L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 108 LSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp CCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEE
T ss_pred ccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCC
Confidence 4556666666553 22 355666666666666666533 2 455666666666666666644 4455666666666666
Q ss_pred CcCccc
Q 043041 276 NNLSGK 281 (395)
Q Consensus 276 N~l~~~ 281 (395)
|++++.
T Consensus 182 N~~~~~ 187 (263)
T 1xeu_A 182 QKCVNE 187 (263)
T ss_dssp EEEECC
T ss_pred CcccCC
Confidence 666544
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.80 E-value=2.1e-20 Score=166.46 Aligned_cols=171 Identities=20% Similarity=0.265 Sum_probs=133.3
Q ss_pred CCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCCCccE
Q 043041 20 LFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIV 99 (395)
Q Consensus 20 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~ 99 (395)
.+.+++.+++++|.+++.. .+..+++|++|++++|.++ .++ .+..+++|++|++++|.++ .+|. +. .+++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~-~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQIS-DLSP-LK-DLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG-GT-TCSSCCE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccC-CChh-hc-cCCCCCE
Confidence 4666777888888887543 5778888888888888888 455 6788888888888888888 6665 43 6888888
Q ss_pred EEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccccccCCccccCCCCccccceE
Q 043041 100 LSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAV 179 (395)
Q Consensus 100 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (395)
|++++|++++. |. +.. ++|++|++++|++++. + .+
T Consensus 90 L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~-~-~l---------------------------------------- 124 (263)
T 1xeu_A 90 LSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT-D-SL---------------------------------------- 124 (263)
T ss_dssp EECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS-G-GG----------------------------------------
T ss_pred EECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC-h-hh----------------------------------------
Confidence 88888888853 33 223 8899999999988753 1 22
Q ss_pred EEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCcc
Q 043041 180 LTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGG 257 (395)
Q Consensus 180 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 257 (395)
..+++|+.|++++|++++. + .+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++.
T Consensus 125 -----------~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 125 -----------IHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -----------TTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred -----------cCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 2355678999999999854 4 688999999999999999865 6788999999999999999865
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=1.3e-19 Score=154.22 Aligned_cols=154 Identities=14% Similarity=0.165 Sum_probs=91.4
Q ss_pred cCCCCCCEEECCCCcccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccch
Q 043041 67 QNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMA 146 (395)
Q Consensus 67 ~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 146 (395)
..+++|++|++++|.++ .+| .+. .+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~----- 110 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIE-YAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG----- 110 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGG-GCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT-----
T ss_pred hhcCCccEEeccCCCcc-ChH-HHh-cCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC-----
Confidence 34455555666655555 555 333 3556666666665443 2234555666666666666665444433332
Q ss_pred hccccccccCccccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCC
Q 043041 147 QEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLS 226 (395)
Q Consensus 147 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 226 (395)
+++|++|++++|.+++..|..+..+++|+.|+++
T Consensus 111 ----------------------------------------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 144 (197)
T 4ezg_A 111 ----------------------------------------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144 (197)
T ss_dssp ----------------------------------------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECC
T ss_pred ----------------------------------------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEcc
Confidence 3334666666666666666667777777777777
Q ss_pred CCc-CcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCcc
Q 043041 227 RNN-LTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSG 280 (395)
Q Consensus 227 ~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 280 (395)
+|. ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus 145 ~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 145 YNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp SCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 776 44 444 56777777777777777764 33 56777777777777777653
No 114
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.80 E-value=1e-20 Score=191.49 Aligned_cols=182 Identities=20% Similarity=0.231 Sum_probs=98.2
Q ss_pred cCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCCCccEEEccceeeccccCccCC
Q 043041 37 KIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLC 116 (395)
Q Consensus 37 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 116 (395)
..++.|..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+. .+++|++|+|++|.++ .+|..++
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~ 290 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT-SLPAELG 290 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS-SCCSSGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC-ccChhhc
Confidence 34666777777777777777777 56666667777777777777777 7777665 4777777777777777 5677777
Q ss_pred CCCCccEEEcccCCCCCCCCccccccccchhccccccccCccccccCCccccCCCCccccceEEEeeccccccccccCcc
Q 043041 117 YLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLV 196 (395)
Q Consensus 117 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 196 (395)
.+++|++|+|++|.++ .+|..|.. +++|
T Consensus 291 ~l~~L~~L~L~~N~l~-~lp~~~~~---------------------------------------------------l~~L 318 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVT-TLPWEFGN---------------------------------------------------LCNL 318 (727)
T ss_dssp GGTTCSEEECCSSCCC-CCCSSTTS---------------------------------------------------CTTC
T ss_pred CCCCCCEEECCCCCCC-ccChhhhc---------------------------------------------------CCCc
Confidence 7777777777777775 34444443 3344
Q ss_pred cEEECcCCCCccCCChhhhcCcC-CCEEeCCCCcCcccCCcccCCCCCCCEEECcCC--------ccCccCcccccCCCC
Q 043041 197 KMLDLSSNKLGGEVPEEIMDLVG-LIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRN--------RFFGGIPSSLSLLSG 267 (395)
Q Consensus 197 ~~L~Ls~n~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N--------~l~~~~p~~l~~l~~ 267 (395)
+.|+|++|.+++.+|..+..+.. +..++|++|.+++.+|.. |+.|++++| .+.+..+..+..+..
T Consensus 319 ~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~ 392 (727)
T 4b8c_D 319 QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAK 392 (727)
T ss_dssp CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--------------------------------------
T ss_pred cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccc
Confidence 77888888888777777655422 224677788887777654 455666666 344444444556666
Q ss_pred CCEEeCcCCcCcc
Q 043041 268 LSVMDLSYNNLSG 280 (395)
Q Consensus 268 L~~L~Ls~N~l~~ 280 (395)
+....+++|-+.+
T Consensus 393 ~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 393 RTFTVLSYNTLCQ 405 (727)
T ss_dssp ---------CCCG
T ss_pred cceeeeecccccc
Confidence 6777778887753
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=2.1e-19 Score=152.90 Aligned_cols=155 Identities=19% Similarity=0.208 Sum_probs=123.7
Q ss_pred CCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCc
Q 043041 42 MGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFI 121 (395)
Q Consensus 42 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 121 (395)
.+.+++|+.|++++|.++ .+| .+..+++|++|++++|.++ .++ .+. .+++|++|++++|++++..+..++.+++|
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-PIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-GGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-hhh-cCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 456788999999999998 556 6888999999999999776 554 444 58999999999999988788889999999
Q ss_pred cEEEcccCCCCCCCCccccccccchhccccccccCccccccCCccccCCCCccccceEEEeeccccccccccCcccEEEC
Q 043041 122 QILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDL 201 (395)
Q Consensus 122 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 201 (395)
++|++++|.+++..+..+.. +++|++|++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~---------------------------------------------------l~~L~~L~L 143 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINT---------------------------------------------------LPKVNSIDL 143 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTT---------------------------------------------------CSSCCEEEC
T ss_pred CEEEecCCccCcHhHHHHhh---------------------------------------------------CCCCCEEEc
Confidence 99999999888655544433 455688999
Q ss_pred cCCC-CccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCc
Q 043041 202 SSNK-LGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFG 256 (395)
Q Consensus 202 s~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 256 (395)
++|. ++ .+| .+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|++.+
T Consensus 144 ~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 144 SYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred cCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 9998 55 555 68899999999999999985 44 78889999999999998763
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.80 E-value=2.3e-19 Score=151.88 Aligned_cols=89 Identities=21% Similarity=0.281 Sum_probs=57.3
Q ss_pred cccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCc
Q 043041 195 LVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLS 274 (395)
Q Consensus 195 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 274 (395)
+|++|+|++|++++..|..|..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..|..+..+++|+.|+++
T Consensus 55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 34555555555555555666666666666666666666666666666666666666666666666666666667777777
Q ss_pred CCcCcccCC
Q 043041 275 YNNLSGKIP 283 (395)
Q Consensus 275 ~N~l~~~~p 283 (395)
+|+++|.++
T Consensus 135 ~N~l~c~c~ 143 (192)
T 1w8a_A 135 SNPFNCNCH 143 (192)
T ss_dssp TCCBCCSGG
T ss_pred CCCccCcCc
Confidence 776666554
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.79 E-value=7.9e-19 Score=148.61 Aligned_cols=132 Identities=27% Similarity=0.352 Sum_probs=117.7
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCC-CCCCCCCccEEecccccCcccCchhccCCCCCCEEECCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPD-SMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGR 79 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~ 79 (395)
+.+++++|+++ .+|..+.. +|+.|++++|++++..+. .|+.+++|++|+|++|.+++..|..|.++++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 47999999997 78876654 999999999999977665 489999999999999999998899999999999999999
Q ss_pred CcccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCC
Q 043041 80 NALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIP 136 (395)
Q Consensus 80 n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~ 136 (395)
|+++ .++...+..+++|++|++++|++++..|..+..+++|++|++++|.+.+..+
T Consensus 88 N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCC-ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 9999 5555544469999999999999999999999999999999999999987644
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.79 E-value=2.8e-20 Score=188.34 Aligned_cols=125 Identities=26% Similarity=0.300 Sum_probs=109.8
Q ss_pred cCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhh
Q 043041 13 RLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGE 92 (395)
Q Consensus 13 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~ 92 (395)
..|+.+..++.|+.|+|++|.+. .+|..+.++++|++|+|++|.|+ .+|..|.++++|++|+|++|.++ .+|..+.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~- 290 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG- 290 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG-
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc-
Confidence 45788999999999999999998 67887889999999999999999 88999999999999999999999 9999987
Q ss_pred cCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCcccccc
Q 043041 93 SLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNF 142 (395)
Q Consensus 93 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 142 (395)
.+++|++|+|++|.++ .+|..|+.+++|++|++++|.+++.+|..+..+
T Consensus 291 ~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence 5999999999999998 778889999999999999999999888776544
No 119
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=7.2e-21 Score=189.24 Aligned_cols=125 Identities=13% Similarity=0.092 Sum_probs=59.2
Q ss_pred CEEEccCCccccc----CCCCccCCCCCCEEECCCCccc----ccCCCCCCCCCCccEEecccccCcc------------
Q 043041 1 MYLDLSNNLLSGR----LPDCWPLFDRLRILDLANNNFS----GKIPDSMGSLPNIQILSLHNNSLTG------------ 60 (395)
Q Consensus 1 ~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~L~~n~l~~------------ 60 (395)
++|+|++|.+++. ++..+..+++|+.|++++|.++ +.++..+.++++|+.|++++|.+.+
T Consensus 167 ~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~ 246 (592)
T 3ogk_B 167 KTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLE 246 (592)
T ss_dssp SEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCC
T ss_pred CEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHH
Confidence 3566666666543 2222334555666666555554 1223333445555555555554331
Q ss_pred --------------cCchhccCCCCCCEEECCCCcccccCchhHhhcCCCccEEEccceeeccccC-ccCCCCCCccEEE
Q 043041 61 --------------ELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIP-FQLCYLPFIQILD 125 (395)
Q Consensus 61 --------------~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~ 125 (395)
..+..+..+++|+.|+++++... .+|..+. .+++|++|++++|.+++... ..+..+++|++|+
T Consensus 247 ~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~-~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~ 324 (592)
T 3ogk_B 247 EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFP-FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLE 324 (592)
T ss_dssp EEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGG-GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEE
T ss_pred hhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHh-hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEe
Confidence 11223344455555555554332 4444433 35555555555555443222 2234455555555
Q ss_pred cc
Q 043041 126 LS 127 (395)
Q Consensus 126 l~ 127 (395)
++
T Consensus 325 L~ 326 (592)
T 3ogk_B 325 TR 326 (592)
T ss_dssp EE
T ss_pred cc
Confidence 55
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.76 E-value=2.1e-18 Score=142.74 Aligned_cols=129 Identities=22% Similarity=0.247 Sum_probs=87.5
Q ss_pred CEEEccCCccc-ccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCC
Q 043041 1 MYLDLSNNLLS-GRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGR 79 (395)
Q Consensus 1 ~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~ 79 (395)
++|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|++++
T Consensus 27 ~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 104 (168)
T 2ell_A 27 RELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104 (168)
T ss_dssp SEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBS
T ss_pred CEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccC
Confidence 35677777776 56666667777777777777777654 5667777777777777777765666666677777777777
Q ss_pred CcccccCc--hhHhhcCCCccEEEccceeeccccC---ccCCCCCCccEEEcccCCCCC
Q 043041 80 NALSGEIP--KWIGESLPKLIVLSLMSNKFHGIIP---FQLCYLPFIQILDLSSNNIPG 133 (395)
Q Consensus 80 n~l~~~ip--~~~~~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~l~~n~l~~ 133 (395)
|.++ .+| ..+. .+++|++|++++|++++..+ ..+..+++|++|++++|.+..
T Consensus 105 N~l~-~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 105 NKLK-DISTLEPLK-KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp SSCC-SSGGGGGGS-SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred CccC-cchhHHHHh-cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 7776 444 3333 57777777777777765444 356677777777777776653
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.75 E-value=3.5e-18 Score=138.46 Aligned_cols=124 Identities=23% Similarity=0.278 Sum_probs=62.0
Q ss_pred CCCCEEECCCCccc-ccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCCCccEE
Q 043041 22 DRLRILDLANNNFS-GKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVL 100 (395)
Q Consensus 22 ~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L 100 (395)
++|+.|++++|.++ +.+|..++.+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+. .+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAE-KCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHH-HCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhh-hCCCCCEE
Confidence 44555555555554 44555555555555555555555533 4455555555555555555533444333 35555555
Q ss_pred Eccceeeccc-cCccCCCCCCccEEEcccCCCCCCCC---ccccccccchhc
Q 043041 101 SLMSNKFHGI-IPFQLCYLPFIQILDLSSNNIPGIIP---KCFNNFTAMAQE 148 (395)
Q Consensus 101 ~L~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~l 148 (395)
++++|++++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.+
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L 145 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEE
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccc
Confidence 5555555532 22445555555555555555554433 344444444433
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=141.42 Aligned_cols=128 Identities=24% Similarity=0.297 Sum_probs=115.1
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
+.+++++|.++ .+|..+. ++|+.|+|++|+++ .+|..|.++++|++|+|++|.+++..+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46899999998 6777654 68999999999998 67889999999999999999999888889999999999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCC
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPG 133 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 133 (395)
.++ .++...+..+++|++|++++|+++...+..|..+++|++|++++|.+..
T Consensus 89 ~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 999 6776655579999999999999997777789999999999999999874
No 123
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.74 E-value=1.8e-17 Score=138.35 Aligned_cols=132 Identities=20% Similarity=0.230 Sum_probs=116.3
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
+.+++++|+++ .+|..+. ++|+.|++++|++++..+..|+.+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 46899999998 5665544 79999999999999877778899999999999999999777778899999999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCC
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIP 136 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~ 136 (395)
.++ .+|...+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+
T Consensus 87 ~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred Ccc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999 7777665579999999999999997777778899999999999999987554
No 124
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.73 E-value=1.3e-19 Score=180.27 Aligned_cols=261 Identities=11% Similarity=-0.016 Sum_probs=181.4
Q ss_pred CEEEccCCccc---ccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCc-hhccCCCCCCEEE
Q 043041 1 MYLDLSNNLLS---GRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELP-SSLQNCSLLILMD 76 (395)
Q Consensus 1 ~~L~Ls~n~l~---~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~ 76 (395)
++|+++..... +..+..+..+++|+.|+++++.. +.+|..+..+++|++|+|++|.+++... ..+..+++|++|+
T Consensus 246 ~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~ 324 (592)
T 3ogk_B 246 EEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLE 324 (592)
T ss_dssp CEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEE
T ss_pred HhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEe
Confidence 35666643322 23445678889999999988644 3677788889999999999999875433 4468899999999
Q ss_pred CCCCcccccCchhHhhcCCCccEEEcc-----------ceeeccc-cCccCCCCCCccEEEcccCCCCCCCCccccc-cc
Q 043041 77 LGRNALSGEIPKWIGESLPKLIVLSLM-----------SNKFHGI-IPFQLCYLPFIQILDLSSNNIPGIIPKCFNN-FT 143 (395)
Q Consensus 77 ls~n~l~~~ip~~~~~~l~~L~~L~L~-----------~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-l~ 143 (395)
++ +.+.+.....+...+++|++|+++ .|.+++. ++.....+++|++|+++.|.+++..+..+.. ++
T Consensus 325 L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 403 (592)
T 3ogk_B 325 TR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLK 403 (592)
T ss_dssp EE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCC
T ss_pred cc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCC
Confidence 99 445434444454568999999999 3566543 2222445899999999999998766665554 66
Q ss_pred cchhccccccccCccccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCC--CCccCCChhhhc-CcCC
Q 043041 144 AMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSN--KLGGEVPEEIMD-LVGL 220 (395)
Q Consensus 144 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~p~~~~~-l~~L 220 (395)
+|+.+........+.+ ...+ ........+..+++|+.|+++.+ .+++..+..+.. +++|
T Consensus 404 ~L~~L~l~~~~~~n~l--------~~~p----------~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L 465 (592)
T 3ogk_B 404 NLCDFRLVLLDREERI--------TDLP----------LDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNV 465 (592)
T ss_dssp SCCEEEEEECSCCSCC--------SSCC----------CHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTC
T ss_pred CCcEEEEeecCCCccc--------cCch----------HHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccc
Confidence 6666654321100000 0000 00012223456889999999754 366655555554 8899
Q ss_pred CEEeCCCCcCcc-cCCcccCCCCCCCEEECcCCccCcc-CcccccCCCCCCEEeCcCCcCccc
Q 043041 221 IAMNLSRNNLTG-QITPKIGQLKSLDFLDLSRNRFFGG-IPSSLSLLSGLSVMDLSYNNLSGK 281 (395)
Q Consensus 221 ~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~ 281 (395)
+.|++++|.+++ .++..+..+++|+.|++++|.+++. ++.....+++|+.|++++|++++.
T Consensus 466 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 466 RWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred eEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 999999999986 3455668899999999999998755 444556899999999999998754
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.73 E-value=2.3e-17 Score=136.38 Aligned_cols=135 Identities=23% Similarity=0.172 Sum_probs=99.7
Q ss_pred CCCccEEEccceeec-cccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccccccCCccccCCCC
Q 043041 94 LPKLIVLSLMSNKFH-GIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGD 172 (395)
Q Consensus 94 l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 172 (395)
.++|++|++++|+++ +.+|..+..+++|++|++++|.+++. ..+.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~-------------------------------- 68 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLP-------------------------------- 68 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCC--------------------------------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhc--------------------------------
Confidence 356777777777776 56666667777777777777777654 2222
Q ss_pred ccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccC-CcccCCCCCCCEEECcC
Q 043041 173 FFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQI-TPKIGQLKSLDFLDLSR 251 (395)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~ 251 (395)
.+++|++|++++|.+++.+|..+..+++|+.|++++|.+++.. +..+..+++|+.|++++
T Consensus 69 -------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~ 129 (168)
T 2ell_A 69 -------------------KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129 (168)
T ss_dssp -------------------CCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCS
T ss_pred -------------------cCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeC
Confidence 2445677888888888667777777888888888888887532 26788888899999999
Q ss_pred CccCccCc---ccccCCCCCCEEeCcCCcCccc
Q 043041 252 NRFFGGIP---SSLSLLSGLSVMDLSYNNLSGK 281 (395)
Q Consensus 252 N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~~~ 281 (395)
|.+++..+ ..+..+++|+.|++++|.+...
T Consensus 130 N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 130 CEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp SGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred CcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 98886555 4788888999999998887743
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=1.6e-17 Score=152.92 Aligned_cols=87 Identities=13% Similarity=0.009 Sum_probs=57.0
Q ss_pred cCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCC-EEECcCCccCccCcccccCCCCCCEE
Q 043041 193 LGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLD-FLDLSRNRFFGGIPSSLSLLSGLSVM 271 (395)
Q Consensus 193 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L 271 (395)
+++|+.+++++|+++...+.+|..+++|+.++|.+| ++...+..|.++++|+ .+++.+ .++...+..|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 445667777776666555556677777777777766 6555556677777777 777766 5554555667777777777
Q ss_pred eCcCCcCccc
Q 043041 272 DLSYNNLSGK 281 (395)
Q Consensus 272 ~Ls~N~l~~~ 281 (395)
++++|.++..
T Consensus 303 ~l~~n~i~~I 312 (329)
T 3sb4_A 303 LATGDKITTL 312 (329)
T ss_dssp EECSSCCCEE
T ss_pred EeCCCccCcc
Confidence 7766666643
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.71 E-value=3.6e-17 Score=138.41 Aligned_cols=89 Identities=25% Similarity=0.264 Sum_probs=67.1
Q ss_pred cccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCc
Q 043041 195 LVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLS 274 (395)
Q Consensus 195 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 274 (395)
+|+.|+|++|.+++..+..|..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+..+..+++|+.|+++
T Consensus 55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence 34666666666666666667777778888888888877777778888888888888888886655667888888888888
Q ss_pred CCcCcccCC
Q 043041 275 YNNLSGKIP 283 (395)
Q Consensus 275 ~N~l~~~~p 283 (395)
+|++.+...
T Consensus 135 ~N~~~C~c~ 143 (193)
T 2wfh_A 135 ANPLYCDCN 143 (193)
T ss_dssp SSCEECSGG
T ss_pred CCCeecCCc
Confidence 888876543
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.71 E-value=3e-17 Score=132.91 Aligned_cols=129 Identities=20% Similarity=0.187 Sum_probs=103.1
Q ss_pred CCCccEEEccceeec-cccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccccccCCccccCCCC
Q 043041 94 LPKLIVLSLMSNKFH-GIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGD 172 (395)
Q Consensus 94 l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 172 (395)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~-------------------------------- 61 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLP-------------------------------- 61 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCC--------------------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhh--------------------------------
Confidence 456888888888887 67777778888888888888888754 2222
Q ss_pred ccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCccc-CCcccCCCCCCCEEECcC
Q 043041 173 FFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQ-ITPKIGQLKSLDFLDLSR 251 (395)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~ 251 (395)
.+++|++|++++|.+++.+|..+..+++|+.|++++|.+++. .+..++.+++|+.|++++
T Consensus 62 -------------------~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~ 122 (149)
T 2je0_A 62 -------------------KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122 (149)
T ss_dssp -------------------CCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTT
T ss_pred -------------------cCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcC
Confidence 345568899999999877888888899999999999999863 347888999999999999
Q ss_pred CccCccCc---ccccCCCCCCEEeCcC
Q 043041 252 NRFFGGIP---SSLSLLSGLSVMDLSY 275 (395)
Q Consensus 252 N~l~~~~p---~~l~~l~~L~~L~Ls~ 275 (395)
|.+++..+ ..+..+++|+.||+++
T Consensus 123 N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 123 CEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CcccchHHHHHHHHHHCCCcccccCCC
Confidence 99987665 5788899999998864
No 129
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.70 E-value=6.4e-19 Score=175.22 Aligned_cols=204 Identities=13% Similarity=0.032 Sum_probs=107.4
Q ss_pred cCCCccEEEccceeecccc-CccCCCCCCccEEEcccCCCCCCCCc-cccccccchhccccccc-----cCccccccCCc
Q 043041 93 SLPKLIVLSLMSNKFHGII-PFQLCYLPFIQILDLSSNNIPGIIPK-CFNNFTAMAQEKSSVLS-----VTSEYWFAGGL 165 (395)
Q Consensus 93 ~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~l~~~~~~-----~~~~~~~~~~~ 165 (395)
.+++|++|++++|.+++.. +..+..+++|++|++++| +.+.... ....+++|+.+...... ...........
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 4789999999999876432 223567889999999887 4322111 12235556555431110 00000000000
Q ss_pred cccCCCCccccceEEEe-----eccccccc-cccCcccEEECc--C----CCCccCC-----ChhhhcCcCCCEEeCCCC
Q 043041 166 QLTTAGDFFSGQAVLTW-----KGSQYQYQ-NTLGLVKMLDLS--S----NKLGGEV-----PEEIMDLVGLIAMNLSRN 228 (395)
Q Consensus 166 ~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~l~~L~~L~Ls--~----n~l~~~~-----p~~~~~l~~L~~L~Ls~N 228 (395)
.+. ........+.. .+.....+ ..+++|+.|+++ + +.+++.. +..+..+++|+.|+|++
T Consensus 366 ~l~---~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~- 441 (594)
T 2p1m_B 366 SVS---MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG- 441 (594)
T ss_dssp HHH---HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-
T ss_pred HHH---HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-
Confidence 000 00001111111 11111111 246777888887 3 4555221 12255677788888866
Q ss_pred cCcccCCcccCC-CCCCCEEECcCCccCccCcccc-cCCCCCCEEeCcCCcCcccCCC--CcccCccccccccCCCC
Q 043041 229 NLTGQITPKIGQ-LKSLDFLDLSRNRFFGGIPSSL-SLLSGLSVMDLSYNNLSGKIPS--GTQLQSFNASTYAGNEL 301 (395)
Q Consensus 229 ~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~--~~~l~~l~~~~~~gN~l 301 (395)
.+++..+..++. +++|+.|+|++|.+++..+..+ ..+++|+.|++++|++++..+. ...+++++.+++.+|.+
T Consensus 442 ~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 442 LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 565555555544 6778888888887765544444 5677788888888877543221 13456677777777643
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.70 E-value=1.8e-16 Score=132.19 Aligned_cols=89 Identities=21% Similarity=0.187 Sum_probs=61.7
Q ss_pred ccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcC
Q 043041 196 VKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSY 275 (395)
Q Consensus 196 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 275 (395)
|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++
T Consensus 54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 54 LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence 35555555555544445566677777777777777766666677777888888888887755555567788888888888
Q ss_pred CcCcccCCC
Q 043041 276 NNLSGKIPS 284 (395)
Q Consensus 276 N~l~~~~p~ 284 (395)
|++++.+|.
T Consensus 134 N~~~~~~~~ 142 (177)
T 2o6r_A 134 NPWDCSCPR 142 (177)
T ss_dssp SCBCCCHHH
T ss_pred CCeeccCcc
Confidence 888876653
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=3.8e-16 Score=143.65 Aligned_cols=108 Identities=14% Similarity=0.075 Sum_probs=76.5
Q ss_pred cCcccEEECcCCCCccCCChhh-hcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCC-E
Q 043041 193 LGLVKMLDLSSNKLGGEVPEEI-MDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLS-V 270 (395)
Q Consensus 193 l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~-~ 270 (395)
..+++.+.+.++-.. .....+ ..+++|+.++|++|+++...+..|.++++|+.|+|.+| +....+..|.++++|+ .
T Consensus 201 ~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 201 PRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGT 278 (329)
T ss_dssp GGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred ccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEE
Confidence 455667776654322 111222 24889999999999999777778999999999999998 7766667899999999 9
Q ss_pred EeCcCCcCcccCCCC-cccCccccccccCCCCCC
Q 043041 271 MDLSYNNLSGKIPSG-TQLQSFNASTYAGNELCG 303 (395)
Q Consensus 271 L~Ls~N~l~~~~p~~-~~l~~l~~~~~~gN~lc~ 303 (395)
+++.+ .++..-+.. .....|+.+++.+|.+..
T Consensus 279 l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 279 LELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp EEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred EEEcc-cceEEchhhhhCCccCCEEEeCCCccCc
Confidence 99988 665333322 445667777777775543
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.64 E-value=3.1e-16 Score=130.68 Aligned_cols=109 Identities=19% Similarity=0.225 Sum_probs=52.8
Q ss_pred ccCCCCCCEEECCCCcccccCCCCCCCCC-CccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCCC
Q 043041 18 WPLFDRLRILDLANNNFSGKIPDSMGSLP-NIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPK 96 (395)
Q Consensus 18 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~ 96 (395)
+.++.+|+.|++++|+++. +|. +..+. +|++|++++|.+++. ..+..+++|++|++++|.++ .+|..++..+++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~ 89 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD 89 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCC
Confidence 3444555555555555542 232 33322 555555555555532 34455555555555555555 444443334555
Q ss_pred ccEEEccceeeccccCc--cCCCCCCccEEEcccCCCC
Q 043041 97 LIVLSLMSNKFHGIIPF--QLCYLPFIQILDLSSNNIP 132 (395)
Q Consensus 97 L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~l~~n~l~ 132 (395)
|++|++++|+++ .+|. .+..+++|++|++++|.+.
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 555555555553 2232 4445555555555555554
No 133
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.63 E-value=3e-18 Score=170.40 Aligned_cols=87 Identities=16% Similarity=0.316 Sum_probs=42.1
Q ss_pred CCCCCCEEECCCCcccccCCCCCC-CCCCccEEecccc-cCccc-CchhccCCCCCCEEECCCCcccccCchhHh---hc
Q 043041 20 LFDRLRILDLANNNFSGKIPDSMG-SLPNIQILSLHNN-SLTGE-LPSSLQNCSLLILMDLGRNALSGEIPKWIG---ES 93 (395)
Q Consensus 20 ~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~---~~ 93 (395)
.+++|+.|+|++|.+++..+..+. .+++|++|+|++| .++.. ++..+.++++|++|++++|.+++..+..+. ..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 355566666666655544444443 3555666666555 33321 333333555566666655555432222221 12
Q ss_pred CCCccEEEcccee
Q 043041 94 LPKLIVLSLMSNK 106 (395)
Q Consensus 94 l~~L~~L~L~~n~ 106 (395)
+++|++|++++|.
T Consensus 183 ~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 183 YTSLVSLNISCLA 195 (594)
T ss_dssp CCCCCEEECTTCC
T ss_pred CCcCcEEEecccC
Confidence 4455555555554
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.63 E-value=1.9e-15 Score=124.99 Aligned_cols=108 Identities=22% Similarity=0.258 Sum_probs=75.4
Q ss_pred CCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCCCccEEEcc
Q 043041 24 LRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLM 103 (395)
Q Consensus 24 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L~ 103 (395)
.+.+++++|.++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|++++|+++ .+|...+..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECC
Confidence 456777777776 3555443 66777777777777666667777777777777777777 6666655567777777777
Q ss_pred ceeeccccCccCCCCCCccEEEcccCCCCCCC
Q 043041 104 SNKFHGIIPFQLCYLPFIQILDLSSNNIPGII 135 (395)
Q Consensus 104 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~ 135 (395)
+|++++..+..+..+++|++|++++|.+....
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 77777666666777778888888888776543
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.61 E-value=1.2e-15 Score=127.12 Aligned_cols=81 Identities=22% Similarity=0.250 Sum_probs=45.1
Q ss_pred cEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCc--ccCCCCCCCEEECcCCccCccCcc----cccCCCCCCE
Q 043041 197 KMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITP--KIGQLKSLDFLDLSRNRFFGGIPS----SLSLLSGLSV 270 (395)
Q Consensus 197 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~ 270 (395)
+.|++++|.+++..+..+..+++|+.|++++|.++ .+|. .+..+++|+.|++++|.++ .+|. .+..+++|+.
T Consensus 67 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~ 144 (176)
T 1a9n_A 67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRV 144 (176)
T ss_dssp CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSE
T ss_pred CEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccce
Confidence 44444444444333333455556666666666654 3343 5556666666666666665 3444 2666677777
Q ss_pred EeCcCCcCc
Q 043041 271 MDLSYNNLS 279 (395)
Q Consensus 271 L~Ls~N~l~ 279 (395)
||+++|...
T Consensus 145 Ld~~~n~~~ 153 (176)
T 1a9n_A 145 LDFQKVKLK 153 (176)
T ss_dssp ETTEECCHH
T ss_pred eCCCcCCHH
Confidence 777766654
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.61 E-value=3.5e-15 Score=123.90 Aligned_cols=106 Identities=22% Similarity=0.233 Sum_probs=81.8
Q ss_pred CEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCCCccEEEccc
Q 043041 25 RILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMS 104 (395)
Q Consensus 25 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L~~ 104 (395)
+.+++++|+++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|+++ .+|..++..+++|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECCC
Confidence 67788888776 5666554 77888888888888777777888888888888888887 67776655688888888888
Q ss_pred eeeccccCccCCCCCCccEEEcccCCCCCC
Q 043041 105 NKFHGIIPFQLCYLPFIQILDLSSNNIPGI 134 (395)
Q Consensus 105 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 134 (395)
|++++..+..+..+++|++|++++|.+...
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 888866666688888888888888888753
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.60 E-value=1.3e-17 Score=141.94 Aligned_cols=79 Identities=24% Similarity=0.287 Sum_probs=36.3
Q ss_pred cEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCC-cccCCCCCCCEEECcCCccCccCcc----------cccCC
Q 043041 197 KMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQIT-PKIGQLKSLDFLDLSRNRFFGGIPS----------SLSLL 265 (395)
Q Consensus 197 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~----------~l~~l 265 (395)
+.|++++|++++ +| .+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+++.+|. .+..+
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l 173 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence 344444444442 22 34444445555555554442211 2344555555555555555444332 25566
Q ss_pred CCCCEEeCcCCcCc
Q 043041 266 SGLSVMDLSYNNLS 279 (395)
Q Consensus 266 ~~L~~L~Ls~N~l~ 279 (395)
++|+.|| +|.++
T Consensus 174 ~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 174 PNLKKLD--GMPVD 185 (198)
T ss_dssp SSCSEEC--CGGGT
T ss_pred CCcEEEC--CcccC
Confidence 6666665 44443
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.60 E-value=3.9e-18 Score=145.10 Aligned_cols=142 Identities=20% Similarity=0.215 Sum_probs=121.6
Q ss_pred EEEccCCcccccCCC------CccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEE
Q 043041 2 YLDLSNNLLSGRLPD------CWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILM 75 (395)
Q Consensus 2 ~L~Ls~n~l~~~~p~------~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 75 (395)
.++++.+.++|.+|. .+..+++|++|++++|++++ +| .+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus 22 ~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L 98 (198)
T 1ds9_A 22 ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEEL 98 (198)
T ss_dssp CTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEE
T ss_pred CcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEE
Confidence 467888899988887 89999999999999999996 67 8999999999999999999 678888888999999
Q ss_pred ECCCCcccccCchhHhhcCCCccEEEccceeeccccC-ccCCCCCCccEEEcccCCCCCCCCcc----------cccccc
Q 043041 76 DLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIP-FQLCYLPFIQILDLSSNNIPGIIPKC----------FNNFTA 144 (395)
Q Consensus 76 ~ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~~~----------~~~l~~ 144 (395)
++++|+++ .+| .+. .+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..|.. +..+++
T Consensus 99 ~L~~N~l~-~l~-~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~ 175 (198)
T 1ds9_A 99 WISYNQIA-SLS-GIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPN 175 (198)
T ss_dssp EEEEEECC-CHH-HHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSS
T ss_pred ECcCCcCC-cCC-ccc-cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCC
Confidence 99999998 677 454 58999999999999985433 47889999999999999998766543 666777
Q ss_pred chhcc
Q 043041 145 MAQEK 149 (395)
Q Consensus 145 L~~l~ 149 (395)
|+.++
T Consensus 176 L~~Ld 180 (198)
T 1ds9_A 176 LKKLD 180 (198)
T ss_dssp CSEEC
T ss_pred cEEEC
Confidence 76665
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.59 E-value=3.6e-14 Score=133.49 Aligned_cols=138 Identities=14% Similarity=0.051 Sum_probs=107.7
Q ss_pred EEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCc
Q 043041 2 YLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNA 81 (395)
Q Consensus 2 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~ 81 (395)
.+++..+ ++.+-..+|.++ +|+.+++.. .+....+.+|.++++|+.+++.+|.++.+...+|. +.+|+.+.+..+
T Consensus 139 ~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~- 213 (401)
T 4fdw_A 139 KVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT- 213 (401)
T ss_dssp EEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-
T ss_pred EEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-
Confidence 4666655 665666788885 699999986 67767778999999999999999999965555665 689999999855
Q ss_pred ccccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhc
Q 043041 82 LSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQE 148 (395)
Q Consensus 82 l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l 148 (395)
++ .|+...|.++++|+.+++..+ ++..-...|.. .+|+.+++. +.++.+...+|.++.+|+.+
T Consensus 214 l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l 276 (401)
T 4fdw_A 214 LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEV 276 (401)
T ss_dssp CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEE
T ss_pred hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEE
Confidence 76 899888888999999999875 55555667777 789999994 45666667777777666544
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.59 E-value=7.1e-14 Score=131.51 Aligned_cols=231 Identities=10% Similarity=0.035 Sum_probs=157.3
Q ss_pred cccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccCch
Q 043041 9 LLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEIPK 88 (395)
Q Consensus 9 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~ 88 (395)
.++.+-..+|.++ +|+.+++..+ ++.+...+|.++ +|+.+.+.. .++.+-+.+|.+|.+|+.+++.+|.++ .+|.
T Consensus 123 ~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~ 197 (401)
T 4fdw_A 123 SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPA 197 (401)
T ss_dssp TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECT
T ss_pred ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-Eech
Confidence 4554556678885 7999999877 776777888884 799999986 677677789999999999999999999 9999
Q ss_pred hHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccccccCCcccc
Q 043041 89 WIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLT 168 (395)
Q Consensus 89 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~ 168 (395)
..+. ..+|+.+.+..+ +.......|..+++|+.+++..+ ++.+...+|.+ .+|+.+.... .
T Consensus 198 ~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-----~---------- 258 (401)
T 4fdw_A 198 STFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-----G---------- 258 (401)
T ss_dssp TTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-----T----------
T ss_pred hhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-----C----------
Confidence 9996 799999999855 77677788999999999999875 55555566655 3443332100 0
Q ss_pred CCCCccccceEEEeeccccccccccCcccEEECcCCCCc-----cCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCC
Q 043041 169 TAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLG-----GEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKS 243 (395)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 243 (395)
+.......+..+++|+.+++.+|.+. ...+.+|..+++|+.++|. +.++......|.++++
T Consensus 259 -------------i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~ 324 (401)
T 4fdw_A 259 -------------VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRK 324 (401)
T ss_dssp -------------CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCS
T ss_pred -------------ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCC
Confidence 00000112344566666666665543 2344556666666666666 3355455556666666
Q ss_pred CCEEECcCCccCccCcccccCCCCCCEEeCcCCcCc
Q 043041 244 LDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLS 279 (395)
Q Consensus 244 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 279 (395)
|+.++|..| ++...+..|.++ +|+.+++++|.+.
T Consensus 325 L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 325 VTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp CCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred ccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 666666444 444444566666 6666666666443
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.59 E-value=7.7e-15 Score=121.35 Aligned_cols=106 Identities=25% Similarity=0.325 Sum_probs=95.9
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
+++|+++|.++ .+|..+. ++|+.|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|++++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 47999999998 5777664 89999999999999988999999999999999999999887778899999999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGI 110 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~ 110 (395)
+++ .+|...+..+++|++|++++|.+...
T Consensus 89 ~l~-~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLK-SIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccC-EeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 999 78877666799999999999998744
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.57 E-value=1.4e-14 Score=120.25 Aligned_cols=106 Identities=25% Similarity=0.303 Sum_probs=95.4
Q ss_pred CEEEccCCcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 1 MYLDLSNNLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
+.+++++|.++ .+|..+. ++|+.|+|++|++++..|..|+++++|++|+|++|++++..+..|.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 36899999997 7887765 89999999999999988999999999999999999999777777899999999999999
Q ss_pred cccccCchhHhhcCCCccEEEccceeeccc
Q 043041 81 ALSGEIPKWIGESLPKLIVLSLMSNKFHGI 110 (395)
Q Consensus 81 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~ 110 (395)
+++ .+|...+..+++|++|++++|.+...
T Consensus 92 ~l~-~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLK-SIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCC-CCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ccc-eeCHHHhccccCCCEEEeCCCCcccc
Confidence 999 78887566799999999999998743
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.49 E-value=5.8e-16 Score=144.36 Aligned_cols=166 Identities=16% Similarity=0.140 Sum_probs=100.8
Q ss_pred CCCCCEEECCCCcccccCchhHhh----cCCCccEEEccceeeccccCccC-CCCCCccEEEcccCCCCCCCCccccccc
Q 043041 69 CSLLILMDLGRNALSGEIPKWIGE----SLPKLIVLSLMSNKFHGIIPFQL-CYLPFIQILDLSSNNIPGIIPKCFNNFT 143 (395)
Q Consensus 69 l~~L~~L~ls~n~l~~~ip~~~~~----~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 143 (395)
+++|++|++++|.++......+.. ..++|++|+|++|.++......+ ..+++|++|++++|.+++.....+...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~- 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL- 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH-
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH-
Confidence 355777777777766322222221 12567777777777653322222 234567778888777754322222110
Q ss_pred cchhccccccccCccccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccC----CChhhhcCcC
Q 043041 144 AMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGE----VPEEIMDLVG 219 (395)
Q Consensus 144 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~ 219 (395)
+ ....+.|+.|+|++|.++.. ++..+...++
T Consensus 150 -L--------------------------------------------~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~ 184 (372)
T 3un9_A 150 -L--------------------------------------------LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS 184 (372)
T ss_dssp -H--------------------------------------------HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSS
T ss_pred -H--------------------------------------------HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCC
Confidence 0 01234567888888887642 3444566778
Q ss_pred CCEEeCCCCcCccc----CCcccCCCCCCCEEECcCCccCcc----CcccccCCCCCCEEeCcCCcCcc
Q 043041 220 LIAMNLSRNNLTGQ----ITPKIGQLKSLDFLDLSRNRFFGG----IPSSLSLLSGLSVMDLSYNNLSG 280 (395)
Q Consensus 220 L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~ 280 (395)
|++|+|++|.+++. ++..+...++|+.|+|++|.+++. ++..+..+++|++|||++|.++.
T Consensus 185 L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp CCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred cCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 88888888888643 245566677888888888888753 33445567888888888888764
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.46 E-value=1.5e-13 Score=127.23 Aligned_cols=103 Identities=21% Similarity=0.220 Sum_probs=79.3
Q ss_pred EEEccCC-cccccCCCCccCCCCCCEEECCC-CcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCC
Q 043041 2 YLDLSNN-LLSGRLPDCWPLFDRLRILDLAN-NNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGR 79 (395)
Q Consensus 2 ~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~ 79 (395)
.++++++ +++ .+|. +..+++|+.|+|++ |++++..+..|+++++|++|+|++|+|++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4677777 777 4777 88888888888885 888877777788888888888888888877777888888888888888
Q ss_pred CcccccCchhHhhcCCCccEEEccceeec
Q 043041 80 NALSGEIPKWIGESLPKLIVLSLMSNKFH 108 (395)
Q Consensus 80 n~l~~~ip~~~~~~l~~L~~L~L~~n~l~ 108 (395)
|+++ .+|..++..++ |+.|++.+|.+.
T Consensus 90 N~l~-~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALE-SLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCS-CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred Cccc-eeCHHHcccCC-ceEEEeeCCCcc
Confidence 8887 67776664343 778888777765
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.40 E-value=4.5e-15 Score=138.35 Aligned_cols=188 Identities=19% Similarity=0.084 Sum_probs=117.3
Q ss_pred CCCccEEecccccCcccCchhccC-----CCCCCEEECCCCcccccCchhHhhcCCCccEEEccceeeccccCccC----
Q 043041 45 LPNIQILSLHNNSLTGELPSSLQN-----CSLLILMDLGRNALSGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQL---- 115 (395)
Q Consensus 45 l~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l---- 115 (395)
++.|+.|+|++|.++......+.. .++|++|+|++|.++......+...+++|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 356778888888877443333322 26788888888887644444444456778888888888764433333
Q ss_pred -CCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccccccCCccccCCCCccccceEEEeeccccccccccC
Q 043041 116 -CYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLG 194 (395)
Q Consensus 116 -~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 194 (395)
...++|++|++++|.+++.....+.. .+...+
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~-----------------------------------------------~L~~~~ 183 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLME-----------------------------------------------GLAGNT 183 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHH-----------------------------------------------HHHTCS
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHH-----------------------------------------------HHhcCC
Confidence 34577888888888876432222110 012244
Q ss_pred cccEEECcCCCCccC----CChhhhcCcCCCEEeCCCCcCccc----CCcccCCCCCCCEEECcCCccCccCcccccCCC
Q 043041 195 LVKMLDLSSNKLGGE----VPEEIMDLVGLIAMNLSRNNLTGQ----ITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLS 266 (395)
Q Consensus 195 ~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 266 (395)
.|++|+|++|.+++. ++..+...++|+.|+|++|.|++. ++..+...++|++|||++|.|++.....+..+.
T Consensus 184 ~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~ 263 (372)
T 3un9_A 184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLG 263 (372)
T ss_dssp SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC
T ss_pred CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHh
Confidence 578888888888753 345566778899999999988753 334455678899999999998865544443332
Q ss_pred C-----CCEEe--CcCCcCc
Q 043041 267 G-----LSVMD--LSYNNLS 279 (395)
Q Consensus 267 ~-----L~~L~--Ls~N~l~ 279 (395)
. |+.+. +..|.++
T Consensus 264 ~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 264 GAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp ------CEEECCCC----CH
T ss_pred cCCCccchhhHhhhcCCccC
Confidence 1 56665 5555554
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.35 E-value=2.8e-12 Score=118.60 Aligned_cols=106 Identities=18% Similarity=0.107 Sum_probs=92.4
Q ss_pred CEEECCCC-cccccCCCCCCCCCCccEEeccc-ccCcccCchhccCCCCCCEEECCCCcccccCchhHhhcCCCccEEEc
Q 043041 25 RILDLANN-NFSGKIPDSMGSLPNIQILSLHN-NSLTGELPSSLQNCSLLILMDLGRNALSGEIPKWIGESLPKLIVLSL 102 (395)
Q Consensus 25 ~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L 102 (395)
..++++++ +++ .+|. +..+++|+.|+|++ |.+++..+..|.++++|++|+|++|+++ .+|...+..+++|++|+|
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc-eeCHHHhcCCcCCCEEeC
Confidence 45799998 898 4788 99999999999996 9999888889999999999999999999 555555557999999999
Q ss_pred cceeeccccCccCCCCCCccEEEcccCCCCCC
Q 043041 103 MSNKFHGIIPFQLCYLPFIQILDLSSNNIPGI 134 (395)
Q Consensus 103 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 134 (395)
++|++++..+..+..++ |++|++.+|.+...
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 99999977777777666 99999999999754
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.15 E-value=9.8e-12 Score=114.93 Aligned_cols=83 Identities=22% Similarity=0.283 Sum_probs=43.1
Q ss_pred cCcccEEECcCCCCccCCChhhh---cCcCCCEEeCCCCcCccc----CCcccCCCCCCCEEECcCCccCccCcccccC-
Q 043041 193 LGLVKMLDLSSNKLGGEVPEEIM---DLVGLIAMNLSRNNLTGQ----ITPKIGQLKSLDFLDLSRNRFFGGIPSSLSL- 264 (395)
Q Consensus 193 l~~L~~L~Ls~n~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~- 264 (395)
+++|+.|+|.+|.+.+..+..+. .+++|+.|+|+.|.+++. ++..+..+++|+.|+|++|.++...-..+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 45667777777666543333332 355666666666666542 2223334566666666666655433332322
Q ss_pred CCCCCEEeCcCCc
Q 043041 265 LSGLSVMDLSYNN 277 (395)
Q Consensus 265 l~~L~~L~Ls~N~ 277 (395)
+ ...++++.++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 1 2345555544
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.02 E-value=7.1e-09 Score=97.36 Aligned_cols=84 Identities=10% Similarity=-0.009 Sum_probs=64.4
Q ss_pred ccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCC
Q 043041 190 QNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLS 269 (395)
Q Consensus 190 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 269 (395)
+..+.+|+.+.+..+ ++.....+|..+.+|+.+++..+ ++......|.++.+|+.+++..+ ++.....+|.+|++|+
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK 369 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence 345677888888654 55455677888999999999754 76566778899999999999877 6655567889999999
Q ss_pred EEeCcCC
Q 043041 270 VMDLSYN 276 (395)
Q Consensus 270 ~L~Ls~N 276 (395)
.+++..+
T Consensus 370 ~i~lp~~ 376 (394)
T 4fs7_A 370 KVELPKR 376 (394)
T ss_dssp EEEEEGG
T ss_pred EEEECCC
Confidence 9988654
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.01 E-value=6.1e-09 Score=97.83 Aligned_cols=69 Identities=6% Similarity=0.027 Sum_probs=50.2
Q ss_pred ccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCC
Q 043041 10 LSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRN 80 (395)
Q Consensus 10 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 80 (395)
++.+-..+|.++.+|+.+.+.. .++.+-..+|.++++|+.+++.++ ++.+-..+|.++.+|+.+.+..+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~ 127 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM 127 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc
Confidence 3334456788899999999974 466566778999999999999755 55455667888888877766543
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.00 E-value=1.6e-10 Score=106.87 Aligned_cols=185 Identities=15% Similarity=0.203 Sum_probs=112.3
Q ss_pred CCccCCCCCCEEECCCCccc---------ccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCcccccC
Q 043041 16 DCWPLFDRLRILDLANNNFS---------GKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALSGEI 86 (395)
Q Consensus 16 ~~~~~l~~L~~L~Ls~n~l~---------~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~i 86 (395)
.+...+++|+.|.+..+... +.+...+..+++|+.|+|++|.-. .++. + .+++|++|++..+.+....
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHH
T ss_pred HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHH
Confidence 34556778888888654321 112233456788888888877311 2232 3 3778888888877765433
Q ss_pred chhHh-hcCCCccEEEccc--eeeccc-----cCccC--CCCCCccEEEcccCCCCCCCCccccccccchhccccccccC
Q 043041 87 PKWIG-ESLPKLIVLSLMS--NKFHGI-----IPFQL--CYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVT 156 (395)
Q Consensus 87 p~~~~-~~l~~L~~L~L~~--n~l~~~-----~p~~l--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~ 156 (395)
...+. ..+|+|+.|+|+. |...+. +...+ ..+++|++|++.+|.+.+..+..+..
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~--------------- 274 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE--------------- 274 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHH---------------
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHh---------------
Confidence 33333 2478888888753 211111 11122 24678888888887775322111110
Q ss_pred ccccccCCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccC----CChhhhcCcCCCEEeCCCCcCcc
Q 043041 157 SEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGE----VPEEIMDLVGLIAMNLSRNNLTG 232 (395)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~ 232 (395)
...+++|+.|+|+.|.+.+. ++..+..+++|+.|+|++|.+++
T Consensus 275 ---------------------------------a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 275 ---------------------------------SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp ---------------------------------CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred ---------------------------------CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 01356789999999999864 33344678999999999999885
Q ss_pred cCCcccCC-CCCCCEEECcCCc
Q 043041 233 QITPKIGQ-LKSLDFLDLSRNR 253 (395)
Q Consensus 233 ~~p~~~~~-l~~L~~L~Ls~N~ 253 (395)
..-..+.. + ...+++++++
T Consensus 322 ~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 322 EMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHHHc--CCEEEecCCc
Confidence 44433332 2 4668998887
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.93 E-value=5.6e-08 Score=91.24 Aligned_cols=84 Identities=10% Similarity=0.128 Sum_probs=47.0
Q ss_pred cccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCE
Q 043041 191 NTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSV 270 (395)
Q Consensus 191 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 270 (395)
..++.|+.+.+. +.++.....+|..+.+|+.+++..+ ++......|.++.+|+.+.+..+ ++.....+|.+|++|+.
T Consensus 285 ~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~ 361 (394)
T 4gt6_A 285 MNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNN 361 (394)
T ss_dssp TTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCE
T ss_pred ccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCE
Confidence 345556666664 3344344455666666666666543 44344555666666666666543 44333456666666666
Q ss_pred EeCcCCc
Q 043041 271 MDLSYNN 277 (395)
Q Consensus 271 L~Ls~N~ 277 (395)
+++.++.
T Consensus 362 i~~~~~~ 368 (394)
T 4gt6_A 362 IEYSGSR 368 (394)
T ss_dssp EEESSCH
T ss_pred EEECCce
Confidence 6666554
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.76 E-value=1.7e-09 Score=94.92 Aligned_cols=64 Identities=28% Similarity=0.383 Sum_probs=27.7
Q ss_pred CCCCCEEECCCCcccc--cCCCCCCCCCCccEEecccccCcccCchhccCCC--CCCEEECCCCcccccC
Q 043041 21 FDRLRILDLANNNFSG--KIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCS--LLILMDLGRNALSGEI 86 (395)
Q Consensus 21 l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~ls~n~l~~~i 86 (395)
+++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+.+.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcccc
Confidence 4445555555555443 2233334444555555555544432 1122222 4444455544444333
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.72 E-value=2.6e-07 Score=86.66 Aligned_cols=132 Identities=12% Similarity=0.108 Sum_probs=85.2
Q ss_pred ccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCccccccCCccccCCCCccccceEEEeeccccccccc
Q 043041 113 FQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFAGGLQLTTAGDFFSGQAVLTWKGSQYQYQNT 192 (395)
Q Consensus 113 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (395)
..|..+..|+.+.+.++.. .+...+|.++..|+.+..... . .......+..
T Consensus 259 ~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~~-----i-----------------------~~I~~~aF~~ 309 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSSR-----I-----------------------TELPESVFAG 309 (394)
T ss_dssp TTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCTT-----C-----------------------CEECTTTTTT
T ss_pred ceeeecccccEEecccccc-eecCcccccccccccccCCCc-----c-----------------------cccCceeecC
Confidence 3577788899999876543 345567777777765442100 0 0000123456
Q ss_pred cCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEe
Q 043041 193 LGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMD 272 (395)
Q Consensus 193 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 272 (395)
+.+|+.+++..+ ++.....+|.++.+|+.+.+..+ ++......|.++++|+.+++.++.... ..+..+..|+.+.
T Consensus 310 c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~ 384 (394)
T 4gt6_A 310 CISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLP 384 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----
T ss_pred CCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEE
Confidence 788999999764 66456678999999999999754 775667889999999999999986542 4567788899888
Q ss_pred CcCCcC
Q 043041 273 LSYNNL 278 (395)
Q Consensus 273 Ls~N~l 278 (395)
+..|.+
T Consensus 385 i~~~~~ 390 (394)
T 4gt6_A 385 VAPGSI 390 (394)
T ss_dssp ------
T ss_pred eCCCCE
Confidence 776654
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.66 E-value=4.1e-09 Score=87.94 Aligned_cols=115 Identities=16% Similarity=0.095 Sum_probs=86.9
Q ss_pred CccCCCCCCEEECCCC-ccccc----CCCCCCCCCCccEEecccccCcc----cCchhccCCCCCCEEECCCCccccc--
Q 043041 17 CWPLFDRLRILDLANN-NFSGK----IPDSMGSLPNIQILSLHNNSLTG----ELPSSLQNCSLLILMDLGRNALSGE-- 85 (395)
Q Consensus 17 ~~~~l~~L~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~ls~n~l~~~-- 85 (395)
.+...+.|+.|+|++| .+... +...+...+.|++|+|++|.++. .+...+...++|++|+|++|.+...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3456889999999999 88642 44556678899999999999974 2445566778999999999999743
Q ss_pred --CchhHhhcCCCccEEEc--cceeeccc----cCccCCCCCCccEEEcccCCCC
Q 043041 86 --IPKWIGESLPKLIVLSL--MSNKFHGI----IPFQLCYLPFIQILDLSSNNIP 132 (395)
Q Consensus 86 --ip~~~~~~l~~L~~L~L--~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~ 132 (395)
+...+. ..++|++|++ ++|.+... +...+...++|++|++++|.+.
T Consensus 111 ~~l~~~L~-~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQ-SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGG-GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHH-hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 233333 4678999999 88998743 3344556688999999999875
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.63 E-value=5.8e-09 Score=87.04 Aligned_cols=87 Identities=15% Similarity=0.153 Sum_probs=64.9
Q ss_pred cCcccEEECcCCCCccC----CChhhhcCcCCCEEeCCCCcCccc----CCcccCCCCCCCEEEC--cCCccCcc----C
Q 043041 193 LGLVKMLDLSSNKLGGE----VPEEIMDLVGLIAMNLSRNNLTGQ----ITPKIGQLKSLDFLDL--SRNRFFGG----I 258 (395)
Q Consensus 193 l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L--s~N~l~~~----~ 258 (395)
.+.|++|+|++|.+... +...+...+.|++|+|++|.|.+. +...+...+.|++|+| ++|.+... +
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l 143 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI 143 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence 45578888888888653 334455667889999999988743 4556677788999999 78888754 3
Q ss_pred cccccCCCCCCEEeCcCCcCc
Q 043041 259 PSSLSLLSGLSVMDLSYNNLS 279 (395)
Q Consensus 259 p~~l~~l~~L~~L~Ls~N~l~ 279 (395)
...+...+.|+.|++++|.+.
T Consensus 144 ~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 144 ANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCcCEEeccCCCCC
Confidence 455667788999999999875
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.60 E-value=4.7e-08 Score=85.79 Aligned_cols=67 Identities=24% Similarity=0.328 Sum_probs=38.4
Q ss_pred hcCcCCCEEeCCCCcCcc--cCCcccCCCCCCCEEECcCCccCccCcccccCCC--CCCEEeCcCCcCcccCC
Q 043041 215 MDLVGLIAMNLSRNNLTG--QITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLS--GLSVMDLSYNNLSGKIP 283 (395)
Q Consensus 215 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p 283 (395)
..+++|+.|+|++|+|++ .+|..+..+++|+.|+|++|++++. ..+..+. +|+.|+|++|++.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 345666666666666665 3344455566666666666666643 1223333 66666666666666555
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.49 E-value=4e-06 Score=78.02 Aligned_cols=81 Identities=9% Similarity=-0.028 Sum_probs=48.9
Q ss_pred ccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEE
Q 043041 192 TLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVM 271 (395)
Q Consensus 192 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 271 (395)
.+..|+.+.+..+ +......+|..+++|+.+.+.++.++......|.++.+|+.++|..+ ++.....+|.+|++|+.+
T Consensus 261 ~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 261 NCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTI 338 (379)
T ss_dssp TCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCC
T ss_pred eeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEE
Confidence 4455666666433 44344456667777777777766666555566777777777777544 443344566677777666
Q ss_pred eCc
Q 043041 272 DLS 274 (395)
Q Consensus 272 ~Ls 274 (395)
.+.
T Consensus 339 ~ip 341 (379)
T 4h09_A 339 SYP 341 (379)
T ss_dssp CCC
T ss_pred EEC
Confidence 553
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.22 E-value=2.9e-05 Score=72.08 Aligned_cols=217 Identities=10% Similarity=0.010 Sum_probs=133.9
Q ss_pred CCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccccCcc------------cCchhccCCCCCCEEECCCCcc
Q 043041 15 PDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNNSLTG------------ELPSSLQNCSLLILMDLGRNAL 82 (395)
Q Consensus 15 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~------------~~p~~~~~l~~L~~L~ls~n~l 82 (395)
..+|.+. .|+...+..+ ++.....+|..+..++...+..+.... .....+.....+..+.+.....
T Consensus 129 ~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (379)
T 4h09_A 129 NYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVK 206 (379)
T ss_dssp TTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCC
T ss_pred ccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccccccccccccee
Confidence 3445544 5666655443 444556677888888887776544321 1222344555666666554432
Q ss_pred cccCchhHhhcCCCccEEEccceeeccccCccCCCCCCccEEEcccCCCCCCCCccccccccchhccccccccCcccccc
Q 043041 83 SGEIPKWIGESLPKLIVLSLMSNKFHGIIPFQLCYLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSEYWFA 162 (395)
Q Consensus 83 ~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~ 162 (395)
.+....+....+|+.+.+..+ +.......+..+..|+.+.+..+ ++.+...+|.++..|+.+.....
T Consensus 207 --~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--------- 273 (379)
T 4h09_A 207 --TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--------- 273 (379)
T ss_dssp --EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC---------
T ss_pred --EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc---------
Confidence 333333445677777777554 33344556777788888887665 54455556666665554331000
Q ss_pred CCccccCCCCccccceEEEeeccccccccccCcccEEECcCCCCccCCChhhhcCcCCCEEeCCCCcCcccCCcccCCCC
Q 043041 163 GGLQLTTAGDFFSGQAVLTWKGSQYQYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKIGQLK 242 (395)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 242 (395)
........+..+.+|+.+.+.++.++.....+|.++.+|+.+.|..+ ++......|.++.
T Consensus 274 -------------------i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 333 (379)
T 4h09_A 274 -------------------VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCK 333 (379)
T ss_dssp -------------------CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred -------------------ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCC
Confidence 00000112456778899999988888667788999999999999754 7656677899999
Q ss_pred CCCEEECcCCccCccCcccccCCCC
Q 043041 243 SLDFLDLSRNRFFGGIPSSLSLLSG 267 (395)
Q Consensus 243 ~L~~L~Ls~N~l~~~~p~~l~~l~~ 267 (395)
+|+.+.+..+ ++..-..+|.+++.
T Consensus 334 ~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 334 ALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp TCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred CCCEEEECCc-cCEEchhHhhCCCC
Confidence 9999998755 55444556766643
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.10 E-value=4.9e-07 Score=73.72 Aligned_cols=83 Identities=13% Similarity=0.072 Sum_probs=68.7
Q ss_pred cccEEECcCCCCccCCChhhhcCcCCCEEeCCCCc-CcccCCcccCCC----CCCCEEECcCCc-cCccCcccccCCCCC
Q 043041 195 LVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNN-LTGQITPKIGQL----KSLDFLDLSRNR-FFGGIPSSLSLLSGL 268 (395)
Q Consensus 195 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~L 268 (395)
.|+.||++++.++..--..+..+++|+.|+|++|. +++.--..++.+ ++|++|+|++|. +++.--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 58999999999987666678899999999999985 776655666665 479999999984 887655667889999
Q ss_pred CEEeCcCCc
Q 043041 269 SVMDLSYNN 277 (395)
Q Consensus 269 ~~L~Ls~N~ 277 (395)
+.|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 999999874
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.08 E-value=1.5e-06 Score=70.91 Aligned_cols=85 Identities=9% Similarity=0.049 Sum_probs=53.3
Q ss_pred CCccEEecccccCcccCchhccCCCCCCEEECCCCc-ccccCchhHhhc---CCCccEEEcccee-eccccCccCCCCCC
Q 043041 46 PNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNA-LSGEIPKWIGES---LPKLIVLSLMSNK-FHGIIPFQLCYLPF 120 (395)
Q Consensus 46 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~-l~~~ip~~~~~~---l~~L~~L~L~~n~-l~~~~p~~l~~l~~ 120 (395)
..|+.||++++.++..--..+.++++|++|+|++|. +++.--..+... .++|++|++++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 467777777777765444556677777777777774 543222233310 1367888887764 65433334567788
Q ss_pred ccEEEcccCC
Q 043041 121 IQILDLSSNN 130 (395)
Q Consensus 121 L~~L~l~~n~ 130 (395)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 8888888764
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.58 E-value=2e-05 Score=65.42 Aligned_cols=113 Identities=12% Similarity=0.128 Sum_probs=73.2
Q ss_pred cCCCCCCEEECCCC-ccccc----CCCCCCCCCCccEEecccccCcc----cCchhccCCCCCCEEECCCCcccccCchh
Q 043041 19 PLFDRLRILDLANN-NFSGK----IPDSMGSLPNIQILSLHNNSLTG----ELPSSLQNCSLLILMDLGRNALSGEIPKW 89 (395)
Q Consensus 19 ~~l~~L~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~ls~n~l~~~ip~~ 89 (395)
.+-+.|+.|+|++| +|... +..++..-+.|+.|+|++|.+.. .+.+.+...+.|++|+|++|.|...--..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34567888888875 77532 34455666788888888888873 34455566788888888888887443333
Q ss_pred Hhhc---CCCccEEEccce---eecc----ccCccCCCCCCccEEEcccCCC
Q 043041 90 IGES---LPKLIVLSLMSN---KFHG----IIPFQLCYLPFIQILDLSSNNI 131 (395)
Q Consensus 90 ~~~~---l~~L~~L~L~~n---~l~~----~~p~~l~~l~~L~~L~l~~n~l 131 (395)
+.+. -+.|++|+|++| .+.. .+...+..-+.|+.|+++.|.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 3332 346888888754 3332 1333445557788888876654
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.35 E-value=0.00038 Score=53.80 Aligned_cols=57 Identities=23% Similarity=0.334 Sum_probs=39.1
Q ss_pred CEEECCCCccc-ccCCCCCCCCCCccEEecccccCcccCchhccCCCCCCEEECCCCccc
Q 043041 25 RILDLANNNFS-GKIPDSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDLGRNALS 83 (395)
Q Consensus 25 ~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~ 83 (395)
+.++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36677777765 24554432 35778888888887666667777888888888888764
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.33 E-value=0.00052 Score=53.03 Aligned_cols=58 Identities=21% Similarity=0.188 Sum_probs=34.7
Q ss_pred EEeCCCCcCc-ccCCcccCCCCCCCEEECcCCccCccCcccccCCCCCCEEeCcCCcCccc
Q 043041 222 AMNLSRNNLT-GQITPKIGQLKSLDFLDLSRNRFFGGIPSSLSLLSGLSVMDLSYNNLSGK 281 (395)
Q Consensus 222 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 281 (395)
.++.+++.++ ..+|..+ -++|+.|+|++|+|+...+..|..+++|+.|+|++|++.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence 4555555554 2344332 13566777777777655555667777777777777777653
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.30 E-value=9.8e-05 Score=61.25 Aligned_cols=107 Identities=18% Similarity=0.200 Sum_probs=76.8
Q ss_pred CEEEccCC-ccccc----CCCCccCCCCCCEEECCCCcccccCCCCC----CCCCCccEEecccccCccc----Cchhcc
Q 043041 1 MYLDLSNN-LLSGR----LPDCWPLFDRLRILDLANNNFSGKIPDSM----GSLPNIQILSLHNNSLTGE----LPSSLQ 67 (395)
Q Consensus 1 ~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~----~~l~~L~~L~L~~n~l~~~----~p~~~~ 67 (395)
++|+|++| .|... +-+.+..-+.|+.|+|++|++.+.-..++ ..-+.|+.|+|+.|.|++. +.+++.
T Consensus 44 ~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~ 123 (197)
T 1pgv_A 44 KEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTL 123 (197)
T ss_dssp CEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTT
T ss_pred cEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHh
Confidence 47899986 77532 34456677899999999999986544333 4568899999999999842 445567
Q ss_pred CCCCCCEEECCCCc---cccc----CchhHhhcCCCccEEEccceeec
Q 043041 68 NCSLLILMDLGRNA---LSGE----IPKWIGESLPKLIVLSLMSNKFH 108 (395)
Q Consensus 68 ~l~~L~~L~ls~n~---l~~~----ip~~~~~~l~~L~~L~L~~n~l~ 108 (395)
..+.|++|+|++|. +... +...+ +.-+.|+.|+++.|.+.
T Consensus 124 ~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL-~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 124 VTQSIVEFKADNQRQSVLGNQVEMDMMMAI-EENESLLRVGISFASME 170 (197)
T ss_dssp TTCCCSEEECCCCSSCCCCHHHHHHHHHHH-HHCSSCCEEECCCCCHH
T ss_pred hCCceeEEECCCCcCcCcCHHHHHHHHHHH-HhCCCcCeEeccCCCcc
Confidence 77889999998763 3322 22223 34688999999887654
No 165
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=86.82 E-value=0.59 Score=26.87 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=14.9
Q ss_pred eehhhHHHHHHHHHHHHHHHhhhc
Q 043041 337 GFYVSLILGFFSGFWGFCGTLLVK 360 (395)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~ 360 (395)
..++++++|.++++.++.++.++.
T Consensus 11 GaIAGiVvG~v~gv~li~~l~~~~ 34 (38)
T 2k1k_A 11 GEIVAVIFGLLLGAALLLGILVFR 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeeeehHHHHHHHHHHHHHHHH
Confidence 456777777777766555554443
No 166
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=83.43 E-value=0.81 Score=27.22 Aligned_cols=27 Identities=7% Similarity=-0.073 Sum_probs=12.3
Q ss_pred ehhhHHHHHHHHHHHHHHHhhhccccc
Q 043041 338 FYVSLILGFFSGFWGFCGTLLVKSSWR 364 (395)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (395)
+..+++.|+++.+.++.+.+++.++++
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhhH
Confidence 444444445554444444444444433
No 167
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=80.57 E-value=1.1 Score=26.63 Aligned_cols=25 Identities=12% Similarity=-0.157 Sum_probs=10.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcccc
Q 043041 339 YVSLILGFFSGFWGFCGTLLVKSSW 363 (395)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (395)
..+++.|+++.+.++.+.+++.+++
T Consensus 13 A~gVVgGv~~v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 13 AAGVIGGLFILVIVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeehHHHHHHHHHHHHHHHHhhhh
Confidence 3334434444443444434444433
No 168
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=76.40 E-value=2 Score=25.45 Aligned_cols=25 Identities=8% Similarity=-0.113 Sum_probs=10.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcccc
Q 043041 339 YVSLILGFFSGFWGFCGTLLVKSSW 363 (395)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (395)
+++.++|+++.+++..+.+++.+|+
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhheehh
Confidence 4555555443333333333333333
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=61.90 E-value=10 Score=27.02 Aligned_cols=37 Identities=14% Similarity=0.166 Sum_probs=14.4
Q ss_pred CCCCCCCCccEEecccccCcccCchhccCCCCCCEEEC
Q 043041 40 DSMGSLPNIQILSLHNNSLTGELPSSLQNCSLLILMDL 77 (395)
Q Consensus 40 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 77 (395)
.+|.++.+|+.+.+-.+ ++.+-..+|.+|.+|+.+.+
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLIL 50 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEE
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEE
Confidence 34444444444444322 22233333444444444444
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=56.33 E-value=32 Score=24.37 Aligned_cols=48 Identities=10% Similarity=0.056 Sum_probs=38.8
Q ss_pred CcccccCCCCccCCCCCCEEECCCCcccccCCCCCCCCCCccEEecccc
Q 043041 8 NLLSGRLPDCWPLFDRLRILDLANNNFSGKIPDSMGSLPNIQILSLHNN 56 (395)
Q Consensus 8 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 56 (395)
..++.+-..+|.++..|+.+.+-.+ ++.+-..+|.++.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 4566666778999999999999765 45466789999999999999754
No 171
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=48.70 E-value=16 Score=19.96 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHHHHHhhh
Q 043041 340 VSLILGFFSGFWGFCGTLLV 359 (395)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~ 359 (395)
+.+++|.+++++++...+++
T Consensus 10 lt~i~gl~vif~~lg~tfly 29 (40)
T 2l9u_A 10 LTVIAGLVVIFMMLGGTFLY 29 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCceeEE
Confidence 34455666555555444444
No 172
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=48.49 E-value=15 Score=23.70 Aligned_cols=12 Identities=33% Similarity=0.639 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 043041 342 LILGFFSGFWGF 353 (395)
Q Consensus 342 ~~~~~~~~~~~~ 353 (395)
+++|.+++++++
T Consensus 12 ivlGg~~~lll~ 23 (70)
T 2klu_A 12 IVLGGVAGLLLF 23 (70)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHhHHHHHHHH
Confidence 444554544443
No 173
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=44.10 E-value=26 Score=19.23 Aligned_cols=22 Identities=5% Similarity=-0.037 Sum_probs=12.5
Q ss_pred ehhhHHHHHHHHHHHHHHHhhh
Q 043041 338 FYVSLILGFFSGFWGFCGTLLV 359 (395)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~ 359 (395)
.+++++++-+++.+++...+++
T Consensus 8 aIaGIVvgdi~~t~~i~~~vy~ 29 (33)
T 2l34_A 8 VLAGIVVGDLVLTVLIALAVYF 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEeEeHHHHHHHHHHHHHHhh
Confidence 4566666666665555444444
Done!