Query 043043
Match_columns 154
No_of_seqs 127 out of 1177
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 12:14:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043043.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043043hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1187 Serine/threonine prote 99.3 2.5E-12 5.4E-17 97.7 6.8 65 90-154 61-125 (361)
2 KOG0196 Tyrosine kinase, EPH ( 99.0 3.6E-10 7.9E-15 91.1 4.2 47 108-154 633-684 (996)
3 KOG3653 Transforming growth fa 98.8 2.6E-08 5.6E-13 76.6 8.0 43 106-152 212-254 (534)
4 PLN00113 leucine-rich repeat r 98.6 1.1E-06 2.3E-11 74.7 12.6 43 94-139 683-726 (968)
5 KOG1026 Nerve growth factor re 98.6 3.2E-08 7E-13 80.3 3.3 49 106-154 488-543 (774)
6 KOG1094 Discoidin domain recep 98.5 8E-07 1.7E-11 70.4 9.6 49 106-154 540-589 (807)
7 KOG2052 Activin A type IB rece 98.5 2.3E-07 5.1E-12 71.0 5.2 44 106-153 213-256 (513)
8 KOG1025 Epidermal growth facto 98.3 6E-07 1.3E-11 73.6 2.9 48 107-154 699-752 (1177)
9 KOG0193 Serine/threonine prote 97.9 1.8E-05 3.8E-10 63.0 4.2 47 106-154 394-442 (678)
10 PLN03224 probable serine/threo 97.7 6.1E-05 1.3E-09 60.0 4.7 48 102-149 143-207 (507)
11 cd06624 STKc_ASK Catalytic dom 97.7 4.5E-05 9.8E-10 55.2 3.5 56 98-153 2-58 (268)
12 PF08693 SKG6: Transmembrane a 97.5 5.8E-05 1.3E-09 38.5 1.5 34 16-49 6-39 (40)
13 KOG0197 Tyrosine kinases [Sign 97.4 0.00014 3E-09 56.8 3.5 44 110-154 212-255 (468)
14 KOG0192 Tyrosine kinase specif 97.4 0.00017 3.7E-09 55.1 3.9 45 110-154 47-93 (362)
15 KOG0595 Serine/threonine-prote 97.3 0.00016 3.5E-09 55.2 2.7 49 106-154 12-63 (429)
16 KOG0199 ACK and related non-re 97.3 0.00021 4.5E-09 58.4 3.3 45 110-154 116-165 (1039)
17 PRK09188 serine/threonine prot 97.3 0.00035 7.7E-09 53.5 4.4 52 103-154 17-75 (365)
18 KOG1095 Protein tyrosine kinas 97.2 0.00024 5.2E-09 60.3 3.1 50 105-154 693-749 (1025)
19 KOG0194 Protein tyrosine kinas 97.2 0.00034 7.4E-09 55.1 3.0 48 107-154 160-215 (474)
20 cd05067 PTKc_Lck_Blk Catalytic 97.1 0.00083 1.8E-08 48.3 4.7 47 106-153 8-54 (260)
21 KOG1024 Receptor-like protein 97.1 0.00046 1E-08 52.9 3.2 57 96-152 276-339 (563)
22 KOG0600 Cdc2-related protein k 97.0 0.00055 1.2E-08 53.7 3.1 49 106-154 119-170 (560)
23 cd05148 PTKc_Srm_Brk Catalytic 97.0 0.00044 9.5E-09 49.7 2.5 50 104-153 6-55 (261)
24 KOG0658 Glycogen synthase kina 97.0 0.0012 2.5E-08 49.9 4.4 38 106-143 26-64 (364)
25 PF04478 Mid2: Mid2 like cell 97.0 0.0003 6.5E-09 46.7 1.2 19 20-38 47-65 (154)
26 cd05068 PTKc_Frk_like Catalyti 96.9 0.0015 3.3E-08 47.0 4.6 49 104-153 6-54 (261)
27 cd05064 PTKc_EphR_A10 Catalyti 96.9 0.00098 2.1E-08 48.3 3.5 49 105-153 6-59 (266)
28 PHA02988 hypothetical protein; 96.9 0.0028 6E-08 46.6 5.8 57 92-154 13-72 (283)
29 cd05034 PTKc_Src_like Catalyti 96.9 0.002 4.3E-08 46.3 5.0 49 104-153 6-54 (261)
30 KOG0580 Serine/threonine prote 96.9 0.00067 1.5E-08 48.7 2.3 48 106-153 24-75 (281)
31 cd05108 PTKc_EGFR Catalytic do 96.9 0.0011 2.4E-08 49.3 3.7 49 105-153 8-62 (316)
32 cd05114 PTKc_Tec_Rlk Catalytic 96.9 0.0016 3.4E-08 46.8 4.3 48 106-154 6-53 (256)
33 KOG0659 Cdk activating kinase 96.9 0.0013 2.8E-08 48.0 3.7 32 108-139 6-38 (318)
34 cd05033 PTKc_EphR Catalytic do 96.9 0.0014 3E-08 47.3 3.9 50 104-153 4-58 (266)
35 cd05096 PTKc_DDR1 Catalytic do 96.9 0.0013 2.9E-08 48.5 3.8 49 106-154 7-73 (304)
36 cd05102 PTKc_VEGFR3 Catalytic 96.9 0.00071 1.5E-08 50.8 2.3 50 104-153 7-63 (338)
37 cd05104 PTKc_Kit Catalytic dom 96.8 0.0013 2.8E-08 50.4 3.7 49 105-153 36-91 (375)
38 cd05081 PTKc_Jak2_Jak3_rpt2 Ca 96.8 0.0014 3.1E-08 47.7 3.8 48 106-153 6-58 (284)
39 KOG4236 Serine/threonine prote 96.8 0.0012 2.6E-08 52.6 3.4 45 110-154 570-617 (888)
40 KOG4278 Protein tyrosine kinas 96.8 0.00066 1.4E-08 55.1 1.9 50 104-154 267-317 (1157)
41 cd06637 STKc_TNIK Catalytic do 96.8 0.0015 3.2E-08 47.3 3.6 51 102-153 4-55 (272)
42 cd05103 PTKc_VEGFR2 Catalytic 96.8 0.0013 2.9E-08 49.6 3.2 49 105-153 8-63 (343)
43 cd07879 STKc_p38delta_MAPK13 C 96.8 0.0036 7.8E-08 47.2 5.5 50 104-153 15-67 (342)
44 PF01102 Glycophorin_A: Glycop 96.7 0.0012 2.7E-08 42.5 2.5 34 20-53 62-95 (122)
45 cd05070 PTKc_Fyn_Yrk Catalytic 96.7 0.003 6.4E-08 45.4 4.7 46 107-153 9-54 (260)
46 PTZ00284 protein kinase; Provi 96.7 0.0016 3.4E-08 51.4 3.5 41 98-138 123-164 (467)
47 cd08224 STKc_Nek6_Nek7 Catalyt 96.7 0.0032 7E-08 45.2 4.8 50 104-153 2-55 (267)
48 PF12877 DUF3827: Domain of un 96.7 0.0028 6E-08 51.1 4.6 39 12-50 260-298 (684)
49 cd06646 STKc_MAP4K5 Catalytic 96.7 0.0036 7.9E-08 45.1 5.0 48 106-153 11-59 (267)
50 cd05043 PTK_Ryk Pseudokinase d 96.7 0.0012 2.7E-08 48.0 2.5 50 104-153 6-61 (280)
51 cd05072 PTKc_Lyn Catalytic dom 96.7 0.0026 5.6E-08 45.7 4.1 47 106-153 8-54 (261)
52 PLN00034 mitogen-activated pro 96.6 0.0018 3.9E-08 49.0 3.2 46 109-154 79-126 (353)
53 cd05039 PTKc_Csk_like Catalyti 96.6 0.0035 7.6E-08 44.9 4.6 47 105-153 7-53 (256)
54 cd05071 PTKc_Src Catalytic dom 96.6 0.0034 7.4E-08 45.3 4.4 47 106-153 8-54 (262)
55 cd07877 STKc_p38alpha_MAPK14 C 96.6 0.0038 8.2E-08 47.2 4.7 60 94-153 7-69 (345)
56 cd05049 PTKc_Trk Catalytic dom 96.6 0.0019 4.1E-08 46.9 2.9 49 106-154 7-62 (280)
57 KOG0201 Serine/threonine prote 96.6 0.0028 6.1E-08 49.0 3.8 48 106-153 15-64 (467)
58 cd05105 PTKc_PDGFR_alpha Catal 96.6 0.0032 7E-08 48.8 4.3 51 104-154 37-94 (400)
59 cd07869 STKc_PFTAIRE1 Catalyti 96.6 0.0054 1.2E-07 45.3 5.3 50 104-153 5-56 (303)
60 cd05073 PTKc_Hck Catalytic dom 96.5 0.0035 7.6E-08 45.1 4.0 48 105-153 7-54 (260)
61 cd05107 PTKc_PDGFR_beta Cataly 96.5 0.0028 6E-08 49.2 3.4 49 106-154 39-94 (401)
62 KOG0593 Predicted protein kina 96.5 0.0029 6.4E-08 47.1 3.3 28 110-137 8-36 (396)
63 cd05112 PTKc_Itk Catalytic dom 96.5 0.0054 1.2E-07 43.9 4.7 47 106-153 6-52 (256)
64 PTZ00283 serine/threonine prot 96.5 0.0028 6E-08 50.6 3.4 51 103-153 31-84 (496)
65 cd07871 STKc_PCTAIRE3 Catalyti 96.5 0.0071 1.5E-07 44.3 5.3 48 106-153 7-56 (288)
66 cd06638 STKc_myosinIIIA Cataly 96.4 0.0032 6.9E-08 45.9 3.3 59 94-153 8-67 (286)
67 cd06639 STKc_myosinIIIB Cataly 96.4 0.0037 8.1E-08 45.7 3.6 58 94-152 12-70 (291)
68 cd07854 STKc_MAPK4_6 Catalytic 96.4 0.0073 1.6E-07 45.5 5.2 50 104-153 5-55 (342)
69 cd07872 STKc_PCTAIRE2 Catalyti 96.4 0.0068 1.5E-07 44.9 4.9 48 106-153 8-57 (309)
70 cd05106 PTKc_CSF-1R Catalytic 96.4 0.0033 7.2E-08 48.1 3.3 50 104-153 38-94 (374)
71 cd05113 PTKc_Btk_Bmx Catalytic 96.4 0.0054 1.2E-07 44.1 4.2 45 108-153 8-52 (256)
72 cd07864 STKc_CDK12 Catalytic d 96.4 0.0082 1.8E-07 44.1 5.2 51 103-153 6-59 (302)
73 cd08228 STKc_Nek6 Catalytic do 96.4 0.0089 1.9E-07 43.0 5.3 49 105-153 3-55 (267)
74 cd06656 STKc_PAK3 Catalytic do 96.4 0.0072 1.6E-07 44.6 4.8 50 104-153 19-69 (297)
75 KOG0575 Polo-like serine/threo 96.3 0.0074 1.6E-07 48.4 4.9 48 106-153 20-71 (592)
76 cd05063 PTKc_EphR_A2 Catalytic 96.3 0.0047 1E-07 44.6 3.6 50 104-153 5-59 (268)
77 cd05090 PTKc_Ror1 Catalytic do 96.3 0.0054 1.2E-07 44.7 3.9 48 106-153 7-60 (283)
78 cd07870 STKc_PFTAIRE2 Catalyti 96.3 0.009 2E-07 43.7 5.0 51 103-153 4-56 (291)
79 cd05038 PTKc_Jak_rpt2 Catalyti 96.3 0.0067 1.4E-07 44.0 4.2 47 107-153 7-59 (284)
80 PTZ00263 protein kinase A cata 96.2 0.0065 1.4E-07 45.6 4.1 49 105-153 19-71 (329)
81 PTZ00036 glycogen synthase kin 96.2 0.0068 1.5E-07 47.5 4.4 35 103-137 65-100 (440)
82 cd05059 PTKc_Tec_like Catalyti 96.2 0.0075 1.6E-07 43.3 4.2 47 106-153 6-52 (256)
83 KOG0198 MEKK and related serin 96.2 0.0064 1.4E-07 45.7 3.8 49 106-154 19-68 (313)
84 TIGR01982 UbiB 2-polyprenylphe 96.2 0.0084 1.8E-07 47.2 4.7 31 109-139 122-152 (437)
85 cd05036 PTKc_ALK_LTK Catalytic 96.2 0.0044 9.6E-08 45.0 3.0 51 103-153 5-62 (277)
86 cd07856 STKc_Sty1_Hog1 Catalyt 96.2 0.0066 1.4E-07 45.6 3.9 55 99-153 5-62 (328)
87 cd07844 STKc_PCTAIRE_like Cata 96.2 0.011 2.4E-07 43.1 5.1 49 105-153 6-56 (291)
88 KOG0591 NIMA (never in mitosis 96.2 0.0009 2E-08 49.3 -0.7 45 110-154 25-72 (375)
89 KOG4257 Focal adhesion tyrosin 96.2 0.0046 1E-07 50.3 3.0 49 106-154 391-445 (974)
90 KOG0597 Serine-threonine prote 96.1 0.0042 9.2E-08 49.9 2.5 46 109-154 7-55 (808)
91 KOG0663 Protein kinase PITSLRE 96.1 0.0037 8.1E-08 47.1 2.1 48 106-153 78-128 (419)
92 cd05052 PTKc_Abl Catalytic dom 96.1 0.0076 1.7E-07 43.4 3.7 47 106-153 8-55 (263)
93 cd05050 PTKc_Musk Catalytic do 96.1 0.0051 1.1E-07 44.9 2.8 50 104-153 5-61 (288)
94 cd05109 PTKc_HER2 Catalytic do 96.1 0.0067 1.4E-07 44.1 3.4 48 105-152 8-61 (279)
95 cd05093 PTKc_TrkB Catalytic do 96.1 0.005 1.1E-07 45.1 2.7 49 105-153 6-60 (288)
96 PLN03225 Serine/threonine-prot 96.1 0.0079 1.7E-07 48.8 3.9 36 102-137 130-170 (566)
97 cd06652 STKc_MEKK2 Catalytic d 96.0 0.01 2.2E-07 42.7 4.2 49 105-153 3-57 (265)
98 KOG0594 Protein kinase PCTAIRE 96.0 0.0053 1.2E-07 46.0 2.7 31 109-139 16-47 (323)
99 cd05069 PTKc_Yes Catalytic dom 96.0 0.013 2.8E-07 42.2 4.6 47 106-153 8-54 (260)
100 cd05046 PTK_CCK4 Pseudokinase 96.0 0.0085 1.8E-07 43.4 3.7 50 104-153 5-61 (275)
101 cd06654 STKc_PAK1 Catalytic do 96.0 0.014 3E-07 43.0 4.9 49 105-153 21-70 (296)
102 cd06655 STKc_PAK2 Catalytic do 96.0 0.014 3E-07 43.1 4.8 49 105-153 20-69 (296)
103 cd08229 STKc_Nek7 Catalytic do 96.0 0.0054 1.2E-07 44.1 2.6 48 106-153 4-55 (267)
104 cd06641 STKc_MST3 Catalytic do 96.0 0.012 2.7E-07 42.7 4.5 48 106-153 6-55 (277)
105 cd06611 STKc_SLK_like Catalyti 96.0 0.0048 1E-07 44.8 2.2 48 106-153 7-55 (280)
106 cd07878 STKc_p38beta_MAPK11 Ca 96.0 0.012 2.6E-07 44.2 4.4 50 104-153 15-67 (343)
107 cd07849 STKc_ERK1_2_like Catal 96.0 0.015 3.3E-07 43.6 4.9 50 104-153 5-56 (336)
108 cd07845 STKc_CDK10 Catalytic d 96.0 0.015 3.3E-07 43.0 4.8 50 104-153 7-59 (309)
109 cd05065 PTKc_EphR_B Catalytic 95.9 0.0064 1.4E-07 43.9 2.8 48 106-153 6-58 (269)
110 cd06651 STKc_MEKK3 Catalytic d 95.9 0.012 2.6E-07 42.4 4.2 49 105-153 3-57 (266)
111 PTZ00382 Variant-specific surf 95.9 0.0036 7.7E-08 38.8 1.2 23 17-39 61-83 (96)
112 PF08374 Protocadherin: Protoc 95.9 0.013 2.9E-07 41.1 4.1 30 15-44 31-60 (221)
113 cd05062 PTKc_IGF-1R Catalytic 95.9 0.0073 1.6E-07 43.9 3.0 51 103-153 5-62 (277)
114 cd05596 STKc_ROCK Catalytic do 95.9 0.0063 1.4E-07 46.5 2.7 50 104-153 43-96 (370)
115 cd06647 STKc_PAK_I Catalytic d 95.9 0.016 3.4E-07 42.6 4.7 49 105-153 20-69 (293)
116 cd05144 RIO2_C RIO kinase fami 95.9 0.014 3.1E-07 40.5 4.3 32 106-137 17-48 (198)
117 cd06616 PKc_MKK4 Catalytic dom 95.9 0.0067 1.5E-07 44.3 2.7 47 107-153 7-55 (288)
118 cd06649 PKc_MEK2 Catalytic dom 95.9 0.011 2.3E-07 44.5 3.7 51 104-154 5-57 (331)
119 PLN00009 cyclin-dependent kina 95.9 0.016 3.4E-07 42.5 4.6 49 105-153 3-54 (294)
120 cd06612 STKc_MST1_2 Catalytic 95.9 0.011 2.4E-07 42.2 3.7 48 104-153 3-51 (256)
121 cd07880 STKc_p38gamma_MAPK12 C 95.9 0.015 3.3E-07 43.9 4.6 51 103-153 14-67 (343)
122 PF02439 Adeno_E3_CR2: Adenovi 95.9 0.0041 8.9E-08 31.2 1.0 7 27-33 8-14 (38)
123 cd06657 STKc_PAK4 Catalytic do 95.8 0.013 2.8E-07 43.2 4.0 44 110-153 26-70 (292)
124 cd06644 STKc_STK10_LOK Catalyt 95.8 0.01 2.3E-07 43.4 3.5 46 108-153 16-62 (292)
125 KOG1989 ARK protein kinase fam 95.8 0.0096 2.1E-07 49.3 3.5 49 106-154 39-88 (738)
126 cd05092 PTKc_TrkA Catalytic do 95.8 0.0092 2E-07 43.5 3.2 48 106-153 7-60 (280)
127 cd06614 STKc_PAK Catalytic dom 95.8 0.013 2.9E-07 42.7 4.0 51 102-153 17-68 (286)
128 cd06650 PKc_MEK1 Catalytic dom 95.8 0.012 2.6E-07 44.2 3.8 50 104-153 5-56 (333)
129 PF15102 TMEM154: TMEM154 prot 95.8 0.025 5.3E-07 37.5 4.7 8 94-101 125-132 (146)
130 KOG4250 TANK binding protein k 95.8 0.0038 8.2E-08 51.0 1.1 45 110-154 19-65 (732)
131 cd05621 STKc_ROCK2 Catalytic d 95.8 0.011 2.4E-07 45.2 3.6 51 103-153 42-96 (370)
132 cd07876 STKc_JNK2 Catalytic do 95.8 0.016 3.5E-07 43.9 4.5 50 104-153 21-73 (359)
133 cd05061 PTKc_InsR Catalytic do 95.8 0.0085 1.8E-07 43.9 2.9 50 104-153 6-62 (288)
134 PTZ00426 cAMP-dependent protei 95.8 0.013 2.7E-07 44.4 3.8 48 106-153 32-84 (340)
135 PRK13184 pknD serine/threonine 95.8 0.021 4.6E-07 48.8 5.4 49 105-153 3-55 (932)
136 cd06648 STKc_PAK_II Catalytic 95.8 0.017 3.7E-07 42.3 4.3 48 106-153 21-69 (285)
137 KOG0581 Mitogen-activated prot 95.7 0.017 3.6E-07 43.8 4.2 54 94-154 76-131 (364)
138 cd06618 PKc_MKK7 Catalytic dom 95.7 0.019 4.2E-07 42.1 4.6 47 106-152 17-65 (296)
139 cd05056 PTKc_FAK Catalytic dom 95.7 0.0096 2.1E-07 43.0 2.9 48 106-153 8-60 (270)
140 cd05066 PTKc_EphR_A Catalytic 95.7 0.012 2.5E-07 42.5 3.3 49 105-153 5-58 (267)
141 cd06659 STKc_PAK6 Catalytic do 95.7 0.016 3.5E-07 42.7 4.1 44 110-153 27-71 (297)
142 cd06645 STKc_MAP4K3 Catalytic 95.7 0.0099 2.2E-07 42.8 2.9 48 106-153 11-59 (267)
143 cd06607 STKc_TAO Catalytic dom 95.7 0.025 5.4E-07 41.8 5.1 50 104-153 15-68 (307)
144 cd05053 PTKc_FGFR Catalytic do 95.7 0.0091 2E-07 43.7 2.7 50 104-153 12-68 (293)
145 KOG1006 Mitogen-activated prot 95.7 0.0047 1E-07 45.3 1.0 45 109-153 69-115 (361)
146 cd07873 STKc_PCTAIRE1 Catalyti 95.7 0.027 5.8E-07 41.5 5.1 48 106-153 8-57 (301)
147 cd05622 STKc_ROCK1 Catalytic d 95.7 0.012 2.5E-07 45.1 3.2 57 97-153 36-96 (371)
148 cd05054 PTKc_VEGFR Catalytic d 95.6 0.0078 1.7E-07 45.4 2.2 49 105-153 8-63 (337)
149 cd06620 PKc_MAPKK_Byr1_like Ca 95.6 0.014 3E-07 42.6 3.4 45 109-153 10-56 (284)
150 cd07875 STKc_JNK1 Catalytic do 95.6 0.024 5.3E-07 43.0 4.8 50 104-153 24-76 (364)
151 cd06635 STKc_TAO1 Catalytic do 95.6 0.018 4E-07 42.8 4.0 48 106-153 27-78 (317)
152 KOG0605 NDR and related serine 95.6 0.015 3.4E-07 46.1 3.6 34 104-137 141-175 (550)
153 cd06608 STKc_myosinIII_like Ca 95.5 0.019 4.1E-07 41.3 3.8 51 102-153 4-55 (275)
154 cd07866 STKc_BUR1 Catalytic do 95.5 0.028 6.2E-07 41.3 4.8 50 104-153 8-60 (311)
155 KOG0662 Cyclin-dependent kinas 95.5 0.016 3.5E-07 40.3 3.1 28 110-137 8-36 (292)
156 cd05088 PTKc_Tie2 Catalytic do 95.5 0.019 4E-07 42.5 3.7 49 105-153 8-60 (303)
157 KOG1035 eIF-2alpha kinase GCN2 95.5 0.0044 9.5E-08 53.5 0.4 50 104-153 479-530 (1351)
158 cd05080 PTKc_Tyk2_rpt2 Catalyt 95.4 0.026 5.7E-07 41.1 4.4 47 107-153 7-59 (283)
159 PF03109 ABC1: ABC1 family; I 95.4 0.0052 1.1E-07 39.6 0.5 30 110-139 17-46 (119)
160 cd05048 PTKc_Ror Catalytic Dom 95.4 0.016 3.4E-07 42.1 3.0 48 106-153 7-61 (283)
161 cd06613 STKc_MAP4K3_like Catal 95.4 0.033 7.1E-07 39.8 4.6 50 104-153 3-53 (262)
162 cd06636 STKc_MAP4K4_6 Catalyti 95.4 0.022 4.9E-07 41.4 3.8 58 94-152 6-64 (282)
163 cd07843 STKc_CDC2L1 Catalytic 95.4 0.025 5.4E-07 41.4 4.0 49 105-153 6-57 (293)
164 cd07865 STKc_CDK9 Catalytic do 95.4 0.038 8.3E-07 40.6 5.0 49 105-153 13-64 (310)
165 cd06653 STKc_MEKK3_like_1 Cata 95.3 0.028 6.2E-07 40.4 4.2 49 105-153 3-57 (264)
166 cd05051 PTKc_DDR Catalytic dom 95.3 0.019 4.2E-07 41.9 3.4 49 105-153 6-72 (296)
167 cd07855 STKc_ERK5 Catalytic do 95.3 0.04 8.8E-07 41.3 5.2 50 104-153 5-57 (334)
168 cd05091 PTKc_Ror2 Catalytic do 95.3 0.018 3.8E-07 41.9 3.1 44 110-153 11-61 (283)
169 cd05610 STKc_MASTL Catalytic d 95.3 0.034 7.3E-07 46.1 5.1 49 105-153 5-57 (669)
170 PF06365 CD34_antigen: CD34/Po 95.3 0.076 1.6E-06 37.3 5.9 25 21-45 99-123 (202)
171 cd05032 PTKc_InsR_like Catalyt 95.3 0.018 3.9E-07 41.6 3.1 49 105-153 7-62 (277)
172 cd05089 PTKc_Tie1 Catalytic do 95.3 0.024 5.1E-07 41.7 3.7 49 105-153 3-55 (297)
173 cd06642 STKc_STK25-YSK1 Cataly 95.3 0.014 3E-07 42.4 2.4 46 108-153 8-55 (277)
174 cd05095 PTKc_DDR2 Catalytic do 95.2 0.017 3.7E-07 42.4 2.8 49 105-153 6-72 (296)
175 cd06643 STKc_SLK Catalytic dom 95.2 0.021 4.6E-07 41.5 3.3 44 110-153 11-55 (282)
176 cd07874 STKc_JNK3 Catalytic do 95.2 0.029 6.4E-07 42.4 4.2 50 104-153 17-69 (355)
177 KOG0032 Ca2+/calmodulin-depend 95.2 0.027 5.9E-07 43.5 3.9 47 108-154 39-89 (382)
178 cd06625 STKc_MEKK3_like Cataly 95.2 0.049 1.1E-06 39.0 5.1 50 104-153 2-57 (263)
179 cd05082 PTKc_Csk Catalytic dom 95.2 0.039 8.4E-07 39.5 4.5 45 106-153 8-52 (256)
180 KOG0694 Serine/threonine prote 95.2 0.044 9.5E-07 44.8 5.0 36 104-139 368-404 (694)
181 cd05057 PTKc_EGFR_like Catalyt 95.1 0.024 5.3E-07 41.2 3.3 48 106-153 9-62 (279)
182 KOG0577 Serine/threonine prote 95.1 0.018 4E-07 46.7 2.8 48 106-153 28-79 (948)
183 cd05079 PTKc_Jak1_rpt2 Catalyt 95.1 0.028 6.1E-07 41.0 3.6 48 106-153 6-59 (284)
184 cd07852 STKc_MAPK15 Catalytic 95.1 0.024 5.2E-07 42.5 3.3 49 105-153 8-59 (337)
185 cd05055 PTKc_PDGFR Catalytic d 95.1 0.023 4.9E-07 42.1 3.0 50 104-153 35-91 (302)
186 KOG0200 Fibroblast/platelet-de 95.0 0.023 5E-07 46.6 3.2 51 104-154 296-355 (609)
187 cd05110 PTKc_HER4 Catalytic do 95.0 0.028 6.1E-07 41.5 3.4 49 105-153 8-62 (303)
188 cd05097 PTKc_DDR_like Catalyti 95.0 0.018 4E-07 42.2 2.4 49 106-154 7-71 (295)
189 cd05094 PTKc_TrkC Catalytic do 95.0 0.021 4.6E-07 41.8 2.7 48 106-153 7-60 (291)
190 PF14575 EphA2_TM: Ephrin type 95.0 0.0032 6.9E-08 37.1 -1.4 20 90-109 53-72 (75)
191 cd07858 STKc_TEY_MAPK_plant Ca 95.0 0.053 1.2E-06 40.7 4.8 49 105-153 6-57 (337)
192 PTZ00024 cyclin-dependent prot 94.9 0.048 1E-06 40.8 4.4 28 110-137 15-43 (335)
193 cd05101 PTKc_FGFR2 Catalytic d 94.8 0.032 6.8E-07 41.2 3.3 48 106-153 17-73 (304)
194 cd07850 STKc_JNK Catalytic dom 94.8 0.05 1.1E-06 41.2 4.4 50 104-153 16-68 (353)
195 cd05111 PTK_HER3 Pseudokinase 94.8 0.042 9.1E-07 40.0 3.8 47 106-152 9-61 (279)
196 cd06640 STKc_MST4 Catalytic do 94.8 0.032 6.9E-07 40.5 3.1 48 106-153 6-55 (277)
197 cd05083 PTKc_Chk Catalytic dom 94.8 0.033 7.1E-07 39.8 3.2 45 106-153 8-52 (254)
198 cd06658 STKc_PAK5 Catalytic do 94.8 0.035 7.7E-07 40.8 3.4 44 110-153 28-72 (292)
199 smart00090 RIO RIO-like kinase 94.6 0.04 8.7E-07 39.7 3.3 33 106-138 30-64 (237)
200 PF15345 TMEM51: Transmembrane 94.6 0.13 2.9E-06 36.6 5.6 33 21-53 57-89 (233)
201 cd06634 STKc_TAO2 Catalytic do 94.6 0.035 7.6E-07 41.1 3.0 48 106-153 17-68 (308)
202 cd07851 STKc_p38 Catalytic dom 94.5 0.06 1.3E-06 40.6 4.2 50 104-153 15-67 (343)
203 PF01034 Syndecan: Syndecan do 94.5 0.011 2.4E-07 33.4 0.1 9 25-33 12-20 (64)
204 PRK04750 ubiB putative ubiquin 94.5 0.07 1.5E-06 43.1 4.6 34 105-139 121-155 (537)
205 PF05454 DAG1: Dystroglycan (D 94.5 0.011 2.3E-07 43.9 0.0 21 34-54 158-178 (290)
206 cd05099 PTKc_FGFR4 Catalytic d 94.4 0.031 6.6E-07 41.5 2.4 49 105-153 13-70 (314)
207 cd06633 STKc_TAO3 Catalytic do 94.4 0.1 2.2E-06 38.7 5.3 48 106-153 23-74 (313)
208 PF02439 Adeno_E3_CR2: Adenovi 94.4 0.11 2.3E-06 26.2 3.5 26 22-48 7-32 (38)
209 KOG0582 Ste20-like serine/thre 94.4 0.068 1.5E-06 41.9 4.2 48 107-154 29-78 (516)
210 PF02009 Rifin_STEVOR: Rifin/s 94.3 0.027 5.7E-07 42.0 1.9 26 26-51 260-285 (299)
211 cd05098 PTKc_FGFR1 Catalytic d 94.3 0.049 1.1E-06 40.2 3.3 48 106-153 20-76 (307)
212 PRK09605 bifunctional UGMP fam 94.3 0.17 3.6E-06 40.9 6.5 27 104-130 333-359 (535)
213 PHA03212 serine/threonine kina 94.2 0.071 1.5E-06 41.2 4.0 44 104-153 92-136 (391)
214 PF06697 DUF1191: Protein of u 94.1 0.069 1.5E-06 39.3 3.6 32 16-47 207-239 (278)
215 KOG0667 Dual-specificity tyros 93.9 0.086 1.9E-06 42.7 4.1 30 109-138 191-221 (586)
216 PHA02882 putative serine/threo 93.9 0.081 1.8E-06 38.9 3.8 32 105-136 13-48 (294)
217 KOG0607 MAP kinase-interacting 93.7 0.065 1.4E-06 40.6 2.9 55 95-154 74-129 (463)
218 PF02480 Herpes_gE: Alphaherpe 93.6 0.019 4.2E-07 45.1 0.0 22 23-44 353-374 (439)
219 PTZ00266 NIMA-related protein 93.5 0.069 1.5E-06 46.1 3.1 51 104-154 13-66 (1021)
220 PF05393 Hum_adeno_E3A: Human 93.4 0.16 3.4E-06 30.5 3.5 10 41-50 51-60 (94)
221 KOG0574 STE20-like serine/thre 93.3 0.015 3.2E-07 43.6 -1.1 47 106-154 35-82 (502)
222 KOG0598 Ribosomal protein S6 k 93.3 0.067 1.5E-06 40.6 2.3 33 105-137 26-59 (357)
223 cd05100 PTKc_FGFR3 Catalytic d 93.1 0.12 2.5E-06 38.8 3.5 48 106-153 14-70 (334)
224 PHA03211 serine/threonine kina 93.1 0.13 2.8E-06 40.8 3.9 32 105-136 170-202 (461)
225 PF13908 Shisa: Wnt and FGF in 92.9 0.1 2.2E-06 36.0 2.8 23 20-42 77-99 (179)
226 KOG1167 Serine/threonine prote 92.8 0.06 1.3E-06 41.6 1.5 50 102-153 34-87 (418)
227 KOG0615 Serine/threonine prote 92.4 0.21 4.5E-06 38.9 3.9 45 110-154 178-230 (475)
228 KOG1164 Casein kinase (serine/ 92.4 0.2 4.4E-06 37.6 3.9 34 105-138 19-54 (322)
229 PTZ00046 rifin; Provisional 92.3 0.09 2E-06 40.0 1.9 25 28-52 321-345 (358)
230 PF03302 VSP: Giardia variant- 92.1 0.12 2.6E-06 40.3 2.4 31 15-45 360-390 (397)
231 KOG1163 Casein kinase (serine/ 92.0 0.38 8.2E-06 35.2 4.6 41 96-137 8-49 (341)
232 PTZ00267 NIMA-related protein 92.0 0.2 4.3E-06 39.8 3.6 48 106-153 69-118 (478)
233 TIGR01477 RIFIN variant surfac 92.0 0.1 2.3E-06 39.6 1.9 25 28-52 316-340 (353)
234 KOG0660 Mitogen-activated prot 92.0 0.13 2.8E-06 39.1 2.4 48 106-153 24-74 (359)
235 KOG0661 MAPK related serine/th 91.9 0.05 1.1E-06 42.9 0.2 28 110-137 16-44 (538)
236 PF01034 Syndecan: Syndecan do 91.5 0.04 8.7E-07 31.1 -0.5 20 19-38 10-29 (64)
237 TIGR01478 STEVOR variant surfa 91.5 0.25 5.4E-06 36.4 3.3 10 41-50 277-286 (295)
238 PHA03207 serine/threonine kina 91.4 0.28 6E-06 37.8 3.8 34 105-138 93-129 (392)
239 PF15069 FAM163: FAM163 family 91.4 0.6 1.3E-05 30.8 4.7 25 21-45 5-29 (143)
240 KOG0583 Serine/threonine prote 91.2 0.37 8.1E-06 37.2 4.3 34 105-138 18-52 (370)
241 KOG0578 p21-activated serine/t 91.2 0.31 6.7E-06 39.2 3.8 50 105-154 274-324 (550)
242 PTZ00370 STEVOR; Provisional 91.1 0.28 6E-06 36.2 3.3 9 42-50 274-282 (296)
243 PF04689 S1FA: DNA binding pro 91.1 0.73 1.6E-05 26.0 4.2 33 17-49 8-40 (69)
244 PRK10359 lipopolysaccharide co 91.0 0.43 9.3E-06 34.4 4.2 36 103-139 30-65 (232)
245 PF01299 Lamp: Lysosome-associ 91.0 0.17 3.6E-06 38.0 2.1 29 22-50 270-298 (306)
246 PF03229 Alpha_GJ: Alphavirus 90.9 0.51 1.1E-05 29.9 3.9 19 23-41 84-102 (126)
247 PF04478 Mid2: Mid2 like cell 90.9 0.093 2E-06 35.0 0.6 26 14-40 45-70 (154)
248 PHA03265 envelope glycoprotein 90.9 0.46 9.9E-06 36.1 4.2 29 8-36 337-365 (402)
249 PHA03209 serine/threonine kina 90.8 0.4 8.7E-06 36.4 4.1 35 103-137 65-100 (357)
250 PF15050 SCIMP: SCIMP protein 90.7 0.3 6.6E-06 31.2 2.7 21 31-51 16-36 (133)
251 KOG0579 Ste20-like serine/thre 90.5 0.042 9.1E-07 45.2 -1.5 43 112-154 40-83 (1187)
252 KOG1166 Mitotic checkpoint ser 90.4 0.26 5.6E-06 42.5 2.9 32 106-137 700-731 (974)
253 PF15176 LRR19-TM: Leucine-ric 90.3 0.44 9.5E-06 29.5 3.1 24 18-41 14-37 (102)
254 KOG0586 Serine/threonine prote 90.2 0.46 1E-05 38.6 4.1 53 102-154 54-109 (596)
255 PF12191 stn_TNFRSF12A: Tumour 90.1 0.11 2.5E-06 33.4 0.5 32 23-54 79-110 (129)
256 PF07204 Orthoreo_P10: Orthore 90.0 0.23 4.9E-06 30.3 1.7 19 31-50 50-68 (98)
257 KOG1027 Serine/threonine prote 90.0 0.11 2.4E-06 43.6 0.4 31 106-137 511-542 (903)
258 KOG0587 Traf2- and Nck-interac 89.5 0.46 9.9E-06 40.4 3.6 46 94-139 9-55 (953)
259 PTZ00208 65 kDa invariant surf 89.2 0.03 6.5E-07 42.9 -3.0 34 16-49 381-414 (436)
260 COG0661 AarF Predicted unusual 89.1 0.34 7.4E-06 39.1 2.6 30 110-139 131-160 (517)
261 KOG0611 Predicted serine/threo 88.8 0.13 2.9E-06 40.2 0.2 45 110-154 59-107 (668)
262 PF10873 DUF2668: Protein of u 88.8 0.86 1.9E-05 30.1 3.8 30 21-50 60-89 (155)
263 KOG4279 Serine/threonine prote 88.4 0.68 1.5E-05 39.0 3.8 41 111-151 582-623 (1226)
264 KOG2345 Serine/threonine prote 88.3 0.36 7.9E-06 35.3 2.0 48 105-152 22-70 (302)
265 PF07213 DAP10: DAP10 membrane 87.9 0.3 6.4E-06 28.9 1.2 33 18-50 30-62 (79)
266 KOG0596 Dual specificity; seri 87.8 0.18 3.9E-06 40.7 0.3 45 110-154 367-413 (677)
267 PF05568 ASFV_J13L: African sw 87.7 0.6 1.3E-05 30.9 2.6 24 27-50 34-57 (189)
268 KOG0984 Mitogen-activated prot 87.7 0.53 1.1E-05 33.7 2.5 44 110-153 52-97 (282)
269 PHA03265 envelope glycoprotein 87.6 0.36 7.9E-06 36.6 1.8 36 15-50 340-376 (402)
270 PF14610 DUF4448: Protein of u 87.2 0.54 1.2E-05 32.7 2.3 13 24-36 159-171 (189)
271 PF12768 Rax2: Cortical protei 86.9 2.7 5.8E-05 31.3 5.9 9 17-25 222-230 (281)
272 PHA03390 pk1 serine/threonine- 86.8 2.5 5.5E-05 30.5 5.8 35 104-138 14-51 (267)
273 PHA03210 serine/threonine kina 86.2 0.29 6.4E-06 39.1 0.7 23 104-126 148-170 (501)
274 KOG0610 Putative serine/threon 86.1 0.56 1.2E-05 36.6 2.1 29 110-138 83-112 (459)
275 COG2112 Predicted Ser/Thr prot 85.7 1.6 3.5E-05 30.5 3.9 41 110-153 28-68 (201)
276 KOG4258 Insulin/growth factor 85.6 0.13 2.8E-06 43.3 -1.6 33 94-127 985-1017(1025)
277 KOG0986 G protein-coupled rece 85.3 0.17 3.7E-06 40.0 -1.0 34 104-137 185-219 (591)
278 KOG1165 Casein kinase (serine/ 85.2 0.72 1.6E-05 35.3 2.3 31 106-136 30-61 (449)
279 PF10577 UPF0560: Uncharacteri 85.2 0.6 1.3E-05 39.2 2.0 25 25-49 276-300 (807)
280 KOG0983 Mitogen-activated prot 84.8 1.6 3.5E-05 32.7 3.8 27 111-137 99-126 (391)
281 KOG4721 Serine/threonine prote 84.7 0.24 5.3E-06 40.4 -0.4 31 108-139 128-158 (904)
282 KOG1151 Tousled-like protein k 84.2 0.2 4.3E-06 39.7 -1.1 27 110-136 469-496 (775)
283 KOG0669 Cyclin T-dependent kin 84.1 0.06 1.3E-06 39.5 -3.6 27 110-136 23-50 (376)
284 PF02480 Herpes_gE: Alphaherpe 83.9 0.33 7.1E-06 38.4 0.0 33 20-53 354-386 (439)
285 PHA03099 epidermal growth fact 83.4 0.81 1.8E-05 29.7 1.6 28 25-52 103-130 (139)
286 KOG0616 cAMP-dependent protein 82.0 1.3 2.7E-05 33.4 2.4 30 108-137 48-78 (355)
287 PF01102 Glycophorin_A: Glycop 81.8 0.86 1.9E-05 29.5 1.3 37 18-55 64-100 (122)
288 PF14914 LRRC37AB_C: LRRC37A/B 81.6 1.5 3.2E-05 29.2 2.4 23 22-44 120-142 (154)
289 KOG0612 Rho-associated, coiled 81.5 0.44 9.6E-06 41.7 -0.1 56 98-153 69-128 (1317)
290 KOG0664 Nemo-like MAPK-related 80.1 0.57 1.2E-05 34.9 0.1 46 108-153 57-105 (449)
291 KOG0592 3-phosphoinositide-dep 78.8 1.1 2.4E-05 36.2 1.3 34 104-137 73-107 (604)
292 PF08374 Protocadherin: Protoc 78.6 4.6 9.9E-05 28.7 4.1 36 12-48 32-67 (221)
293 PF11857 DUF3377: Domain of un 77.8 4 8.6E-05 23.9 3.1 29 22-50 29-57 (74)
294 KOG4645 MAPKKK (MAP kinase kin 76.8 1.2 2.6E-05 39.7 1.1 35 103-137 1234-1269(1509)
295 PF12301 CD99L2: CD99 antigen 76.3 3.7 8.1E-05 28.1 3.1 32 20-51 113-144 (169)
296 KOG0668 Casein kinase II, alph 75.8 0.95 2.1E-05 33.0 0.2 43 109-154 43-86 (338)
297 PTZ00382 Variant-specific surf 75.5 2.2 4.8E-05 26.3 1.7 26 13-38 61-86 (96)
298 KOG0690 Serine/threonine prote 75.3 1.6 3.6E-05 33.4 1.3 35 104-138 168-203 (516)
299 PHA03286 envelope glycoprotein 75.3 3.6 7.7E-05 32.5 3.1 9 121-129 474-482 (492)
300 PF05337 CSF-1: Macrophage col 74.8 0.96 2.1E-05 33.3 0.0 27 25-51 228-254 (285)
301 KOG0576 Mitogen-activated prot 74.6 0.87 1.9E-05 37.8 -0.3 36 104-139 15-51 (829)
302 PF02009 Rifin_STEVOR: Rifin/s 73.9 2.3 5E-05 31.9 1.8 19 31-49 268-286 (299)
303 TIGR01495 ETRAMP Plasmodium ri 73.9 4.9 0.00011 24.2 2.9 33 18-50 47-79 (85)
304 PF05084 GRA6: Granule antigen 73.3 14 0.00031 25.1 5.2 27 29-55 154-180 (215)
305 PF05808 Podoplanin: Podoplani 73.3 1.1 2.4E-05 30.3 0.0 29 20-48 127-155 (162)
306 PF05961 Chordopox_A13L: Chord 72.2 8.7 0.00019 22.0 3.4 22 32-53 9-30 (68)
307 KOG0696 Serine/threonine prote 72.1 2.2 4.9E-05 33.7 1.4 33 105-137 350-383 (683)
308 PLN03150 hypothetical protein; 71.9 5.2 0.00011 33.2 3.6 25 21-45 543-567 (623)
309 KOG0585 Ca2+/calmodulin-depend 71.6 4.8 0.0001 32.4 3.1 34 104-137 97-131 (576)
310 PF15330 SIT: SHP2-interacting 71.0 3.8 8.2E-05 25.9 2.0 21 35-55 10-30 (107)
311 KOG1235 Predicted unusual prot 71.0 4.9 0.00011 32.7 3.2 30 110-139 167-196 (538)
312 KOG0666 Cyclin C-dependent kin 71.0 1.8 3.9E-05 33.0 0.7 30 110-139 30-64 (438)
313 PHA03283 envelope glycoprotein 69.1 5.8 0.00013 32.0 3.1 20 28-47 405-424 (542)
314 PF07010 Endomucin: Endomucin; 69.1 10 0.00023 27.2 4.0 26 23-48 189-214 (259)
315 KOG0589 Serine/threonine prote 67.7 4.5 9.8E-05 31.9 2.2 45 109-153 9-56 (426)
316 PHA03049 IMV membrane protein; 66.2 14 0.0003 21.1 3.4 18 36-53 13-30 (68)
317 KOG1345 Serine/threonine kinas 65.2 8.1 0.00018 29.0 3.0 45 106-151 26-71 (378)
318 PF02060 ISK_Channel: Slow vol 64.7 8.4 0.00018 25.0 2.7 31 23-53 44-74 (129)
319 PF11770 GAPT: GRB2-binding ad 63.8 1.8 3.9E-05 28.9 -0.5 15 27-41 12-26 (158)
320 PF13908 Shisa: Wnt and FGF in 62.7 5.7 0.00012 27.3 1.8 24 22-45 75-99 (179)
321 PF15069 FAM163: FAM163 family 61.9 8.7 0.00019 25.5 2.4 22 28-49 8-29 (143)
322 KOG0793 Protein tyrosine phosp 61.4 7 0.00015 32.9 2.3 9 94-102 653-661 (1004)
323 PF14979 TMEM52: Transmembrane 61.1 5.3 0.00012 26.6 1.3 10 41-50 41-50 (154)
324 PF15065 NCU-G1: Lysosomal tra 60.7 1.3 2.9E-05 33.9 -1.7 20 31-50 329-348 (350)
325 PF03597 CcoS: Cytochrome oxid 60.2 18 0.0004 18.9 3.1 19 27-45 5-23 (45)
326 PF03988 DUF347: Repeat of Unk 60.0 25 0.00053 19.2 3.7 23 27-49 29-51 (55)
327 PTZ00046 rifin; Provisional 59.7 12 0.00026 28.8 3.2 29 27-55 317-345 (358)
328 KOG4717 Serine/threonine prote 59.6 5.3 0.00011 32.7 1.3 45 107-152 21-69 (864)
329 TIGR01477 RIFIN variant surfac 59.5 12 0.00026 28.8 3.2 29 27-55 312-340 (353)
330 PF10389 CoatB: Bacteriophage 59.3 24 0.00053 18.6 3.4 19 29-47 25-43 (46)
331 PF04971 Lysis_S: Lysis protei 59.1 7.2 0.00016 22.4 1.5 9 22-30 33-41 (68)
332 PF07010 Endomucin: Endomucin; 57.2 6.7 0.00014 28.2 1.4 31 17-48 187-217 (259)
333 PF05624 LSR: Lipolysis stimul 57.0 28 0.00061 18.3 3.6 12 28-39 9-20 (49)
334 PF07423 DUF1510: Protein of u 56.9 3.7 8.1E-05 29.3 0.1 27 19-45 10-36 (217)
335 PRK01723 3-deoxy-D-manno-octul 56.7 31 0.00067 24.8 4.8 28 109-137 36-64 (239)
336 PF15050 SCIMP: SCIMP protein 56.4 6.9 0.00015 25.1 1.2 28 28-55 16-44 (133)
337 PF12606 RELT: Tumour necrosis 56.3 30 0.00065 18.6 3.5 12 28-39 6-17 (50)
338 COG0478 RIO-like serine/threon 55.5 15 0.00033 27.5 3.1 27 110-136 97-123 (304)
339 COG3197 FixS Uncharacterized p 55.0 28 0.0006 19.3 3.3 19 27-45 6-24 (58)
340 TIGR01478 STEVOR variant surfa 55.0 8.3 0.00018 28.7 1.6 20 36-55 269-288 (295)
341 PTZ00370 STEVOR; Provisional 54.9 8.3 0.00018 28.7 1.6 20 36-55 265-284 (296)
342 KOG1290 Serine/threonine prote 54.3 16 0.00034 29.7 3.1 35 106-140 80-115 (590)
343 KOG4482 Sarcoglycan complex, a 53.9 15 0.00033 28.5 2.9 22 31-52 307-328 (449)
344 TIGR00847 ccoS cytochrome oxid 53.8 17 0.00038 19.6 2.4 18 28-45 7-24 (51)
345 PF06809 NPDC1: Neural prolife 53.7 16 0.00035 27.7 2.9 14 114-128 298-313 (341)
346 PRK04778 septation ring format 53.6 9.6 0.00021 31.3 2.0 20 27-46 5-24 (569)
347 PF09716 ETRAMP: Malarial earl 53.5 11 0.00023 22.7 1.7 28 18-45 51-78 (84)
348 PF01299 Lamp: Lysosome-associ 51.7 2.4 5.3E-05 31.8 -1.6 35 15-50 267-301 (306)
349 PRK01741 cell division protein 50.8 15 0.00032 28.0 2.4 25 25-49 6-30 (332)
350 KOG0670 U4/U6-associated splic 50.8 15 0.00033 30.2 2.5 27 112-138 440-467 (752)
351 PRK10345 hypothetical protein; 49.7 11 0.00023 26.7 1.5 19 106-124 4-22 (210)
352 PF11980 DUF3481: Domain of un 49.3 43 0.00094 20.1 3.7 8 24-31 16-23 (87)
353 PF07406 NICE-3: NICE-3 protei 48.6 48 0.001 23.2 4.5 12 27-38 15-26 (186)
354 KOG1152 Signal transduction se 48.3 22 0.00047 29.7 3.1 31 106-136 563-594 (772)
355 PF15347 PAG: Phosphoprotein a 48.3 50 0.0011 25.8 4.8 17 22-38 15-31 (428)
356 PHA03281 envelope glycoprotein 47.8 50 0.0011 27.2 4.9 14 110-123 622-635 (642)
357 KOG0588 Serine/threonine prote 47.3 18 0.0004 30.4 2.6 34 106-139 14-48 (786)
358 PF14531 Kinase-like: Kinase-l 46.2 40 0.00086 25.3 4.0 46 106-151 14-63 (288)
359 KOG3637 Vitronectin receptor, 46.0 24 0.00052 31.3 3.3 25 19-43 976-1000(1030)
360 KOG3054 Uncharacterized conser 44.7 34 0.00075 25.0 3.3 7 42-48 19-25 (299)
361 PF13974 YebO: YebO-like prote 44.4 15 0.00032 21.9 1.3 15 36-50 8-22 (80)
362 PF10812 DUF2561: Protein of u 44.4 46 0.001 23.5 3.8 14 17-30 59-72 (207)
363 PF05083 LST1: LST-1 protein; 44.4 42 0.00092 19.4 3.0 8 44-51 17-24 (74)
364 PF06679 DUF1180: Protein of u 43.4 30 0.00066 23.6 2.8 6 45-50 114-119 (163)
365 PF13095 FTA2: Kinetochore Sim 43.3 36 0.00078 24.2 3.3 32 104-136 37-69 (207)
366 PF07253 Gypsy: Gypsy protein; 42.5 24 0.00052 28.3 2.5 24 28-51 421-444 (472)
367 PF12216 m04gp34like: Immune e 42.3 35 0.00075 25.4 3.2 6 23-28 234-239 (272)
368 COG5353 Uncharacterized protei 41.7 67 0.0015 21.6 4.1 24 21-44 4-27 (161)
369 KOG4818 Lysosomal-associated m 41.1 31 0.00066 26.7 2.8 23 22-44 326-348 (362)
370 KOG0584 Serine/threonine prote 40.9 6.8 0.00015 32.3 -0.7 45 110-154 46-95 (632)
371 PF15298 AJAP1_PANP_C: AJAP1/P 40.0 64 0.0014 22.8 4.0 11 23-33 100-110 (205)
372 COG1862 YajC Preprotein transl 39.9 22 0.00047 22.1 1.6 8 116-123 56-63 (97)
373 PF11694 DUF3290: Protein of u 39.6 52 0.0011 22.1 3.4 8 118-125 116-123 (149)
374 PF15183 MRAP: Melanocortin-2 39.4 70 0.0015 19.2 3.6 27 20-46 35-61 (90)
375 PF07178 TraL: TraL protein; 38.9 47 0.001 20.3 3.0 18 37-54 44-61 (95)
376 PF10873 DUF2668: Protein of u 38.4 40 0.00087 22.5 2.7 30 21-50 64-93 (155)
377 PHA03273 envelope glycoprotein 37.8 8.1 0.00018 30.7 -0.7 7 24-30 450-456 (486)
378 PRK10381 LPS O-antigen length 37.6 26 0.00057 27.3 2.1 7 24-30 343-349 (377)
379 PF13179 DUF4006: Family of un 37.2 55 0.0012 18.7 2.8 20 25-44 14-33 (66)
380 KOG0671 LAMMER dual specificit 37.0 10 0.00023 29.5 -0.2 36 103-138 88-124 (415)
381 KOG1240 Protein kinase contain 36.9 31 0.00068 31.1 2.5 47 105-152 24-71 (1431)
382 KOG1834 Calsyntenin [Extracell 36.5 32 0.00069 29.0 2.4 6 60-65 870-875 (952)
383 PF15234 LAT: Linker for activ 35.9 57 0.0012 22.8 3.2 9 121-129 132-140 (230)
384 PF14584 DUF4446: Protein of u 35.8 24 0.00052 23.8 1.4 28 111-138 104-132 (151)
385 KOG0195 Integrin-linked kinase 35.6 19 0.0004 27.2 0.9 40 111-151 197-238 (448)
386 KOG0695 Serine/threonine prote 35.6 11 0.00024 29.2 -0.2 34 104-137 250-284 (593)
387 COG3115 ZipA Cell division pro 35.4 32 0.00069 25.9 2.1 16 27-42 9-24 (324)
388 PF05454 DAG1: Dystroglycan (D 35.3 13 0.00027 27.9 0.0 30 23-52 150-179 (290)
389 PRK01658 holin-like protein; V 35.2 33 0.00071 22.2 1.9 11 29-39 97-107 (122)
390 PF10265 DUF2217: Uncharacteri 34.8 39 0.00085 27.5 2.6 15 19-33 13-27 (514)
391 PRK05585 yajC preprotein trans 34.6 17 0.00037 22.8 0.5 9 114-122 63-71 (106)
392 TIGR00739 yajC preprotein tran 34.1 13 0.00029 22.3 -0.0 6 116-121 50-55 (84)
393 PF03229 Alpha_GJ: Alphavirus 33.2 88 0.0019 20.1 3.5 38 13-50 78-116 (126)
394 KOG0033 Ca2+/calmodulin-depend 33.2 1 2.3E-05 33.1 -5.7 43 110-152 17-62 (355)
395 PRK12274 serine/threonine prot 33.0 55 0.0012 23.5 2.9 19 107-125 5-23 (218)
396 PF09919 DUF2149: Uncharacteri 32.6 38 0.00083 20.7 1.8 19 113-133 71-90 (92)
397 PF07271 Cytadhesin_P30: Cytad 32.3 34 0.00073 25.3 1.8 20 25-44 73-92 (279)
398 TIGR02205 septum_zipA cell div 32.0 21 0.00045 26.7 0.7 6 28-33 8-13 (284)
399 PF12877 DUF3827: Domain of un 31.5 87 0.0019 26.4 4.1 34 22-56 267-301 (684)
400 PF12259 DUF3609: Protein of u 31.1 50 0.0011 25.7 2.6 11 28-38 306-316 (361)
401 PF05297 Herpes_LMP1: Herpesvi 31.1 16 0.00035 27.4 0.0 7 41-47 68-74 (381)
402 PRK03427 cell division protein 31.1 33 0.00071 26.3 1.6 13 27-39 10-22 (333)
403 PLN02745 Putative pectinestera 31.0 1E+02 0.0022 25.8 4.5 28 17-44 19-46 (596)
404 KOG3054 Uncharacterized conser 30.3 37 0.0008 24.9 1.7 27 24-50 4-30 (299)
405 KOG4433 Tweety transmembrane/c 30.2 28 0.00061 28.0 1.2 23 22-44 43-65 (526)
406 PF05356 Phage_Coat_B: Phage C 29.5 1E+02 0.0022 18.1 3.1 13 28-40 63-75 (83)
407 COG4477 EzrA Negative regulato 29.2 56 0.0012 26.8 2.6 9 28-36 5-13 (570)
408 PF04415 DUF515: Protein of un 28.9 74 0.0016 25.2 3.2 22 20-41 29-50 (416)
409 PF15179 Myc_target_1: Myc tar 28.7 94 0.002 21.7 3.3 11 23-33 21-31 (197)
410 PHA03290 envelope glycoprotein 28.7 2E+02 0.0043 22.2 5.3 14 23-36 273-286 (357)
411 PF11837 DUF3357: Domain of un 28.6 19 0.00041 22.6 0.0 20 22-41 29-48 (106)
412 COG5538 SEC66 Endoplasmic reti 28.2 1.1E+02 0.0024 20.8 3.5 9 113-121 95-103 (180)
413 KOG4699 Preprotein translocase 28.2 1.1E+02 0.0024 20.8 3.5 9 113-121 95-103 (180)
414 PHA03292 envelope glycoprotein 27.5 1.9E+02 0.0041 22.8 5.0 14 27-40 323-336 (413)
415 COG1718 RIO1 Serine/threonine 27.4 81 0.0018 23.4 3.0 27 111-137 55-81 (268)
416 KOG1236 Predicted unusual prot 26.7 35 0.00077 27.5 1.2 50 95-148 184-250 (565)
417 PF14654 Epiglycanin_C: Mucin, 26.6 1.2E+02 0.0027 18.8 3.2 43 7-49 2-44 (106)
418 PHA03281 envelope glycoprotein 26.5 1.5E+02 0.0033 24.5 4.6 50 5-54 537-586 (642)
419 COG1580 FliL Flagellar basal b 26.1 1.4E+02 0.003 20.3 3.8 33 14-46 8-40 (159)
420 PRK13707 conjugal transfer pil 26.1 83 0.0018 19.6 2.5 31 25-55 38-68 (101)
421 COG3763 Uncharacterized protei 26.0 45 0.00097 19.3 1.2 35 23-57 3-37 (71)
422 KOG1219 Uncharacterized conser 25.9 85 0.0018 31.3 3.4 32 24-55 3995-4026(4289)
423 PF11346 DUF3149: Protein of u 25.6 1.1E+02 0.0024 15.8 2.8 31 25-55 11-41 (42)
424 KOG2952 Cell cycle control pro 25.6 1.1E+02 0.0024 23.6 3.5 47 16-65 305-351 (351)
425 COG3088 CcmH Uncharacterized p 25.5 1.4E+02 0.0031 20.1 3.7 32 30-61 110-141 (153)
426 KOG0599 Phosphorylase kinase g 24.8 43 0.00093 25.4 1.3 51 104-154 17-76 (411)
427 PHA03054 IMV membrane protein; 24.7 49 0.0011 19.1 1.2 38 5-42 32-69 (72)
428 PF06365 CD34_antigen: CD34/Po 24.7 1.2E+02 0.0025 21.6 3.3 51 2-52 83-133 (202)
429 PF11431 Transport_MerF: Membr 24.7 1E+02 0.0022 16.2 2.3 20 33-52 27-46 (46)
430 PF09835 DUF2062: Uncharacteri 24.6 49 0.0011 21.9 1.5 31 22-52 124-154 (154)
431 PF07095 IgaA: Intracellular g 24.5 1E+02 0.0023 26.1 3.4 25 27-51 5-29 (705)
432 PF04995 CcmD: Heme exporter p 24.2 1.2E+02 0.0026 15.7 2.9 20 31-50 12-31 (46)
433 PF13940 Ldr_toxin: Toxin Ldr, 23.9 1.1E+02 0.0023 15.0 3.0 22 29-50 14-35 (35)
434 PF06697 DUF1191: Protein of u 23.9 1.8E+02 0.004 21.8 4.3 45 6-50 200-244 (278)
435 PF04483 DUF565: Protein of un 23.8 1.3E+02 0.0028 16.8 2.8 28 28-55 7-34 (60)
436 TIGR02588 conserved hypothetic 23.6 94 0.002 20.1 2.5 27 25-51 6-32 (122)
437 PRK11901 hypothetical protein; 23.3 74 0.0016 24.3 2.3 15 27-41 40-54 (327)
438 PF09802 Sec66: Preprotein tra 22.9 76 0.0017 22.3 2.1 45 24-68 3-47 (190)
439 PF06305 DUF1049: Protein of u 22.6 54 0.0012 18.2 1.2 29 22-50 21-49 (68)
440 PF00974 Rhabdo_glycop: Rhabdo 22.5 29 0.00062 28.2 0.0 34 22-55 451-484 (501)
441 PTZ00234 variable surface prot 22.5 1.4E+02 0.003 24.0 3.7 58 27-121 367-433 (433)
442 PF10661 EssA: WXG100 protein 22.4 1.5E+02 0.0033 19.7 3.4 22 27-48 121-142 (145)
443 PHA03282 envelope glycoprotein 22.3 53 0.0011 26.5 1.4 48 5-52 390-437 (540)
444 PF07413 Herpes_UL37_2: Betahe 22.3 99 0.0022 23.1 2.7 28 24-51 244-271 (276)
445 COG4640 Predicted membrane pro 22.1 1.3E+02 0.0028 23.9 3.3 28 16-43 44-71 (465)
446 PRK14748 kdpF potassium-transp 22.0 1.1E+02 0.0023 14.4 2.1 19 25-43 3-21 (29)
447 PF11395 DUF2873: Protein of u 22.0 1.2E+02 0.0027 15.1 3.0 19 27-45 12-30 (43)
448 PF04639 Baculo_E56: Baculovir 21.7 28 0.00061 26.0 -0.2 40 13-52 266-305 (305)
449 PHA03291 envelope glycoprotein 21.5 89 0.0019 24.3 2.4 33 23-55 291-323 (401)
450 PRK04335 cell division protein 21.4 52 0.0011 25.0 1.1 36 24-59 6-41 (313)
451 PF15013 CCSMST1: CCSMST1 fami 21.4 93 0.002 18.4 2.0 17 32-48 35-51 (77)
452 PTZ00087 thrombosponding-relat 21.3 2.2E+02 0.0048 21.3 4.2 42 8-49 282-323 (340)
453 PF15345 TMEM51: Transmembrane 21.3 1.2E+02 0.0027 21.9 3.0 51 5-55 35-88 (233)
454 TIGR03501 gamma_C_targ gammapr 21.2 1.1E+02 0.0023 14.0 2.7 20 30-49 3-22 (26)
455 PF03381 CDC50: LEM3 (ligand-e 21.0 1.3E+02 0.0028 22.4 3.2 29 27-55 250-278 (278)
456 PF13131 DUF3951: Protein of u 21.0 1.2E+02 0.0026 16.4 2.1 27 25-51 6-32 (53)
457 PRK10905 cell division protein 20.8 79 0.0017 24.2 2.0 15 27-41 2-16 (328)
458 TIGR02866 CoxB cytochrome c ox 20.6 1.8E+02 0.0038 20.4 3.6 31 27-57 17-47 (201)
459 KOG1226 Integrin beta subunit 20.5 1.3E+02 0.0029 25.8 3.4 38 16-53 708-745 (783)
460 PF02404 SCF: Stem cell factor 20.5 34 0.00073 25.2 0.0 50 3-52 193-242 (273)
461 TIGR03382 GC_trans_RRR Myxococ 20.4 1.1E+02 0.0024 14.0 2.3 21 30-50 7-27 (27)
462 PF14283 DUF4366: Domain of un 20.4 20 0.00044 25.7 -1.1 53 2-55 138-190 (218)
463 KOG4056 Translocase of outer m 20.3 84 0.0018 20.9 1.8 26 26-51 11-36 (143)
464 PF03264 Cytochrom_NNT: NapC/N 20.1 82 0.0018 21.4 1.9 31 17-47 1-31 (173)
465 PF11157 DUF2937: Protein of u 20.1 72 0.0016 21.8 1.6 33 22-54 135-167 (167)
No 1
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.34 E-value=2.5e-12 Score=97.70 Aligned_cols=65 Identities=40% Similarity=0.628 Sum_probs=56.5
Q ss_pred CcccccHHHHHHhhcCccccceeecCCCcceEEEEeCCCCEEEEEEecCCCCCChHHHHHHHhhC
Q 043043 90 LGLKIPYVEIKFATHNFDRKLVMGKGAFGNVYRGTLRNSMKVAVKRGETGSGQGLPEFQTAIIVL 154 (154)
Q Consensus 90 ~~~~~~~~~l~~at~~f~~~~~iG~g~~g~vy~g~l~~g~~vaVK~l~~~~~~~~~~f~~e~~~l 154 (154)
..+.|++.+|..||++|+..++||+|+||.||+|.+++|..||||++.....+...+|.+|+++|
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~l 125 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEIL 125 (361)
T ss_pred CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHH
Confidence 45679999999999999999999999999999999999999999999755433146699999864
No 2
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=98.99 E-value=3.6e-10 Score=91.09 Aligned_cols=47 Identities=28% Similarity=0.538 Sum_probs=38.5
Q ss_pred ccceeecCCCcceEEEEeC----CCCEEEEEEecCC-CCCChHHHHHHHhhC
Q 043043 108 RKLVMGKGAFGNVYRGTLR----NSMKVAVKRGETG-SGQGLPEFQTAIIVL 154 (154)
Q Consensus 108 ~~~~iG~g~~g~vy~g~l~----~g~~vaVK~l~~~-~~~~~~~f~~e~~~l 154 (154)
.+.+||.|.||+||+|.|+ ....||+|.|+.. ...++.+|+.|+.+|
T Consensus 633 Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIM 684 (996)
T KOG0196|consen 633 IEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIM 684 (996)
T ss_pred EEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhc
Confidence 5568999999999999984 2357999999865 455668999999876
No 3
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=98.80 E-value=2.6e-08 Score=76.56 Aligned_cols=43 Identities=30% Similarity=0.375 Sum_probs=32.1
Q ss_pred ccccceeecCCCcceEEEEeCCCCEEEEEEecCCCCCChHHHHHHHh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLRNSMKVAVKRGETGSGQGLPEFQTAII 152 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~~g~~vaVK~l~~~~~~~~~~f~~e~~ 152 (154)
+....+||+|+||.||||.+.+ ..||||.+.... ..+|.+|=+
T Consensus 212 l~l~eli~~Grfg~V~KaqL~~-~~VAVKifp~~~---kqs~~~Ek~ 254 (534)
T KOG3653|consen 212 LQLLELIGRGRFGCVWKAQLDN-RLVAVKIFPEQE---KQSFQNEKN 254 (534)
T ss_pred hhhHHHhhcCccceeehhhccC-ceeEEEecCHHH---HHHHHhHHH
Confidence 3344679999999999999965 899999995332 345666643
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.60 E-value=1.1e-06 Score=74.75 Aligned_cols=43 Identities=26% Similarity=0.391 Sum_probs=34.2
Q ss_pred ccHHHHHHhhcCccccceeecCCCcceEEEEe-CCCCEEEEEEecCC
Q 043043 94 IPYVEIKFATHNFDRKLVMGKGAFGNVYRGTL-RNSMKVAVKRGETG 139 (154)
Q Consensus 94 ~~~~~l~~at~~f~~~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~ 139 (154)
+++.++.. .+.+.++||+|+||.||+|.. .++..||||++...
T Consensus 683 ~~~~~~~~---~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~ 726 (968)
T PLN00113 683 ITINDILS---SLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDV 726 (968)
T ss_pred hhHHHHHh---hCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCC
Confidence 45555544 467789999999999999997 57889999999643
No 5
>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=3.2e-08 Score=80.33 Aligned_cols=49 Identities=27% Similarity=0.344 Sum_probs=38.5
Q ss_pred ccccceeecCCCcceEEEEeC------CCCEEEEEEecCCCCC-ChHHHHHHHhhC
Q 043043 106 FDRKLVMGKGAFGNVYRGTLR------NSMKVAVKRGETGSGQ-GLPEFQTAIIVL 154 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~------~g~~vaVK~l~~~~~~-~~~~f~~e~~~l 154 (154)
......||+|.||.||+|... +.+.||||.|+..... .+.+|.+|+++|
T Consensus 488 i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLl 543 (774)
T KOG1026|consen 488 IVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELL 543 (774)
T ss_pred eeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHH
Confidence 334456999999999999874 3468999999765444 678999999875
No 6
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=98.54 E-value=8e-07 Score=70.42 Aligned_cols=49 Identities=29% Similarity=0.386 Sum_probs=40.1
Q ss_pred ccccceeecCCCcceEEEEeCCCCEEEEEEecCCCCC-ChHHHHHHHhhC
Q 043043 106 FDRKLVMGKGAFGNVYRGTLRNSMKVAVKRGETGSGQ-GLPEFQTAIIVL 154 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~~g~~vaVK~l~~~~~~-~~~~f~~e~~~l 154 (154)
+--...||+|.||+|..+...++..||||+|...... .+++|..|+.+|
T Consensus 540 L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiL 589 (807)
T KOG1094|consen 540 LRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKIL 589 (807)
T ss_pred eehhhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHH
Confidence 3344569999999999999988899999999765433 458999999875
No 7
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.48 E-value=2.3e-07 Score=71.02 Aligned_cols=44 Identities=30% Similarity=0.416 Sum_probs=34.6
Q ss_pred ccccceeecCCCcceEEEEeCCCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLRNSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
......||+|+||+||+|.++ |..||||.+... +.++|.+|.|+
T Consensus 213 I~L~e~IGkGRyGEVwrG~wr-Ge~VAVKiF~sr---dE~SWfrEtEI 256 (513)
T KOG2052|consen 213 IVLQEIIGKGRFGEVWRGRWR-GEDVAVKIFSSR---DERSWFRETEI 256 (513)
T ss_pred eEEEEEecCccccceeecccc-CCceEEEEeccc---chhhhhhHHHH
Confidence 455578999999999999996 688999999643 24567777764
No 8
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=98.26 E-value=6e-07 Score=73.59 Aligned_cols=48 Identities=29% Similarity=0.428 Sum_probs=36.0
Q ss_pred cccceeecCCCcceEEEEe-CCC----CEEEEEEecCC-CCCChHHHHHHHhhC
Q 043043 107 DRKLVMGKGAFGNVYRGTL-RNS----MKVAVKRGETG-SGQGLPEFQTAIIVL 154 (154)
Q Consensus 107 ~~~~~iG~g~~g~vy~g~l-~~g----~~vaVK~l~~~-~~~~~~~f~~e~~~l 154 (154)
.+..+||.|.||+||+|.+ |+| .+||+|.+... ..+...+|..|+-+|
T Consensus 699 kk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~m 752 (1177)
T KOG1025|consen 699 KKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRM 752 (1177)
T ss_pred hhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHH
Confidence 3457899999999999987 544 57999999643 344457888887543
No 9
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=97.86 E-value=1.8e-05 Score=63.04 Aligned_cols=47 Identities=34% Similarity=0.511 Sum_probs=35.3
Q ss_pred ccccceeecCCCcceEEEEeCCCCEEEEEEecCC--CCCChHHHHHHHhhC
Q 043043 106 FDRKLVMGKGAFGNVYRGTLRNSMKVAVKRGETG--SGQGLPEFQTAIIVL 154 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~~g~~vaVK~l~~~--~~~~~~~f~~e~~~l 154 (154)
+.....||+|+||+||+|.+-+ .||||.|+.. +..+...|.+|+..+
T Consensus 394 v~l~~rIGsGsFGtV~Rg~whG--dVAVK~Lnv~~pt~~qlqaFKnEVa~l 442 (678)
T KOG0193|consen 394 VLLGERIGSGSFGTVYRGRWHG--DVAVKLLNVDDPTPEQLQAFKNEVAVL 442 (678)
T ss_pred hhccceeccccccceeeccccc--ceEEEEEecCCCCHHHHHHHHHHHHHH
Confidence 3344679999999999999963 4999999643 333456799998653
No 10
>PLN03224 probable serine/threonine protein kinase; Provisional
Probab=97.69 E-value=6.1e-05 Score=59.98 Aligned_cols=48 Identities=21% Similarity=0.389 Sum_probs=35.1
Q ss_pred hhcCccccceeecCCCcceEEEEe-----------------CCCCEEEEEEecCCCCCChHHHHH
Q 043043 102 ATHNFDRKLVMGKGAFGNVYRGTL-----------------RNSMKVAVKRGETGSGQGLPEFQT 149 (154)
Q Consensus 102 at~~f~~~~~iG~g~~g~vy~g~l-----------------~~g~~vaVK~l~~~~~~~~~~f~~ 149 (154)
..++|...++||+|+||.||+|.. .++..||||++.........+|.+
T Consensus 143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~ 207 (507)
T PLN03224 143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLK 207 (507)
T ss_pred cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHh
Confidence 356788889999999999999974 235679999996443333345554
No 11
>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase. Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina
Probab=97.66 E-value=4.5e-05 Score=55.19 Aligned_cols=56 Identities=20% Similarity=0.394 Sum_probs=43.0
Q ss_pred HHHHhhcCccccceeecCCCcceEEEEeC-CCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 98 EIKFATHNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 98 ~l~~at~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
|++.++.++....+||+|+||.||+|... ++..|++|.+..........|.+|+++
T Consensus 2 ~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~ 58 (268)
T cd06624 2 EYEYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIAL 58 (268)
T ss_pred CcccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHH
Confidence 45667888888899999999999999864 567899998864433344567777754
No 12
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=97.50 E-value=5.8e-05 Score=38.52 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=18.7
Q ss_pred CCCcceeEEEehhHHHHHHHHHHHHHHHHHHHHh
Q 043043 16 PKKKHFMAVVGSVLACSVLICILEIVLSFVLIWR 49 (154)
Q Consensus 16 ~~~~~~~~ii~~~v~~~vll~i~~~~~~~~~~~r 49 (154)
..+....+.++++++++++++++++++++++||+
T Consensus 6 ~~~~~vaIa~~VvVPV~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 6 SNSNTVAIAVGVVVPVGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred CCCceEEEEEEEEechHHHHHHHHHHhheEEecc
Confidence 3444555666666666666655555555444443
No 13
>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]
Probab=97.43 E-value=0.00014 Score=56.79 Aligned_cols=44 Identities=32% Similarity=0.485 Sum_probs=37.2
Q ss_pred ceeecCCCcceEEEEeCCCCEEEEEEecCCCCCChHHHHHHHhhC
Q 043043 110 LVMGKGAFGNVYRGTLRNSMKVAVKRGETGSGQGLPEFQTAIIVL 154 (154)
Q Consensus 110 ~~iG~g~~g~vy~g~l~~g~~vaVK~l~~~~~~~~~~f~~e~~~l 154 (154)
+.||+|.||+||.|.+++...||+|.+... ..+..+|.+|+.+|
T Consensus 212 ~~LG~G~FG~V~~g~~~~~~~vavk~ik~~-~m~~~~f~~Ea~iM 255 (468)
T KOG0197|consen 212 RELGSGQFGEVWLGKWNGSTKVAVKTIKEG-SMSPEAFLREAQIM 255 (468)
T ss_pred HHhcCCccceEEEEEEcCCCcccceEEecc-ccChhHHHHHHHHH
Confidence 569999999999999988789999999755 33457899999875
No 14
>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]
Probab=97.42 E-value=0.00017 Score=55.12 Aligned_cols=45 Identities=33% Similarity=0.468 Sum_probs=34.3
Q ss_pred ceeecCCCcceEEEEeCCCCEEEEEEecCCCCC--ChHHHHHHHhhC
Q 043043 110 LVMGKGAFGNVYRGTLRNSMKVAVKRGETGSGQ--GLPEFQTAIIVL 154 (154)
Q Consensus 110 ~~iG~g~~g~vy~g~l~~g~~vaVK~l~~~~~~--~~~~f~~e~~~l 154 (154)
..||+|+||+||+|.+.+-..||||.+...... ..++|.+|+.+|
T Consensus 47 ~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il 93 (362)
T KOG0192|consen 47 EVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLL 93 (362)
T ss_pred hhcccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHH
Confidence 459999999999999965444999999643222 256899999764
No 15
>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=97.32 E-value=0.00016 Score=55.15 Aligned_cols=49 Identities=22% Similarity=0.392 Sum_probs=34.8
Q ss_pred ccccceeecCCCcceEEEEeC-CCCEEEEEEecCC--CCCChHHHHHHHhhC
Q 043043 106 FDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETG--SGQGLPEFQTAIIVL 154 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~--~~~~~~~f~~e~~~l 154 (154)
|.....||+|.|+.||+|+.. ++..||||++... +....+-...|+.+|
T Consensus 12 y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iL 63 (429)
T KOG0595|consen 12 YELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKIL 63 (429)
T ss_pred ceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHH
Confidence 333445999999999999985 5789999999643 333344566677654
No 16
>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]
Probab=97.31 E-value=0.00021 Score=58.37 Aligned_cols=45 Identities=31% Similarity=0.387 Sum_probs=35.9
Q ss_pred ceeecCCCcceEEEEeC--CCC--EEEEEEecCCCCC-ChHHHHHHHhhC
Q 043043 110 LVMGKGAFGNVYRGTLR--NSM--KVAVKRGETGSGQ-GLPEFQTAIIVL 154 (154)
Q Consensus 110 ~~iG~g~~g~vy~g~l~--~g~--~vaVK~l~~~~~~-~~~~f~~e~~~l 154 (154)
++||+|+||.|++|.|. +|. .||||+|...... ..++|++|+.+|
T Consensus 116 e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M 165 (1039)
T KOG0199|consen 116 ELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHM 165 (1039)
T ss_pred HHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHH
Confidence 56999999999999984 454 6899999765443 568999999764
No 17
>PRK09188 serine/threonine protein kinase; Provisional
Probab=97.31 E-value=0.00035 Score=53.48 Aligned_cols=52 Identities=21% Similarity=0.210 Sum_probs=37.4
Q ss_pred hcCccccceeecCCCcceEEEEeC--CCCEEEEEEecCCC-----CCChHHHHHHHhhC
Q 043043 103 THNFDRKLVMGKGAFGNVYRGTLR--NSMKVAVKRGETGS-----GQGLPEFQTAIIVL 154 (154)
Q Consensus 103 t~~f~~~~~iG~g~~g~vy~g~l~--~g~~vaVK~l~~~~-----~~~~~~f~~e~~~l 154 (154)
..+|...++||+|+||.||++... ++..+|||++.... ......|.+|+++|
T Consensus 17 ~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL 75 (365)
T PRK09188 17 SARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRAL 75 (365)
T ss_pred cCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHH
Confidence 345777789999999999999874 56778999875321 11234588888764
No 18
>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=97.24 E-value=0.00024 Score=60.31 Aligned_cols=50 Identities=38% Similarity=0.624 Sum_probs=38.1
Q ss_pred CccccceeecCCCcceEEEEeCC--C----CEEEEEEecC-CCCCChHHHHHHHhhC
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLRN--S----MKVAVKRGET-GSGQGLPEFQTAIIVL 154 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~~--g----~~vaVK~l~~-~~~~~~~~f~~e~~~l 154 (154)
+....+.||+|.||.||.|.+.+ | ..||||.|.. .+.+...+|.+|..+|
T Consensus 693 ~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m 749 (1025)
T KOG1095|consen 693 NVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLM 749 (1025)
T ss_pred heEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHH
Confidence 34556789999999999999853 2 4599999964 3455667899998765
No 19
>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=97.15 E-value=0.00034 Score=55.06 Aligned_cols=48 Identities=31% Similarity=0.525 Sum_probs=35.3
Q ss_pred cccceeecCCCcceEEEEeCC--C---CEEEEEEecC---CCCCChHHHHHHHhhC
Q 043043 107 DRKLVMGKGAFGNVYRGTLRN--S---MKVAVKRGET---GSGQGLPEFQTAIIVL 154 (154)
Q Consensus 107 ~~~~~iG~g~~g~vy~g~l~~--g---~~vaVK~l~~---~~~~~~~~f~~e~~~l 154 (154)
....+||+|.||+||+|.+.- + ..||||.... .......+|.+|+.+|
T Consensus 160 ~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvM 215 (474)
T KOG0194|consen 160 ELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVM 215 (474)
T ss_pred cccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHH
Confidence 344789999999999999843 2 2389999864 2334457899999765
No 20
>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk. Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr
Probab=97.14 E-value=0.00083 Score=48.33 Aligned_cols=47 Identities=28% Similarity=0.403 Sum_probs=37.0
Q ss_pred ccccceeecCCCcceEEEEeCCCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLRNSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
|.-...||+|+||.||++..+++..+|+|.+.... ....+|.+|+.+
T Consensus 8 ~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~ 54 (260)
T cd05067 8 LKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGS-MSPEAFLAEANL 54 (260)
T ss_pred ceeeeeeccCccceEEeeecCCCceEEEEEecCCC-CcHHHHHHHHHH
Confidence 44457899999999999999888999999986332 335678888765
No 21
>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]
Probab=97.11 E-value=0.00046 Score=52.93 Aligned_cols=57 Identities=21% Similarity=0.324 Sum_probs=37.7
Q ss_pred HHHHHHhhcCccccceeecCCCcceEEEEeCC------CCEEEEEEecCC-CCCChHHHHHHHh
Q 043043 96 YVEIKFATHNFDRKLVMGKGAFGNVYRGTLRN------SMKVAVKRGETG-SGQGLPEFQTAII 152 (154)
Q Consensus 96 ~~~l~~at~~f~~~~~iG~g~~g~vy~g~l~~------g~~vaVK~l~~~-~~~~~~~f~~e~~ 152 (154)
..+|.....++....++-+|.||+||+|.|.+ -+.|-||.+... +.-+.+.|.+|..
T Consensus 276 ~~~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~ 339 (563)
T KOG1024|consen 276 LQELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESM 339 (563)
T ss_pred HHhhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 34555555667777789999999999997743 345678877433 3334456666654
No 22
>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=97.04 E-value=0.00055 Score=53.74 Aligned_cols=49 Identities=24% Similarity=0.361 Sum_probs=35.7
Q ss_pred ccccceeecCCCcceEEEE-eCCCCEEEEEEecCC--CCCChHHHHHHHhhC
Q 043043 106 FDRKLVMGKGAFGNVYRGT-LRNSMKVAVKRGETG--SGQGLPEFQTAIIVL 154 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~-l~~g~~vaVK~l~~~--~~~~~~~f~~e~~~l 154 (154)
|.....||+|.||.||+++ +..|..||.|++... ......-..+||.+|
T Consensus 119 feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~IL 170 (560)
T KOG0600|consen 119 FEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKIL 170 (560)
T ss_pred HHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHH
Confidence 4445679999999999986 567899999999543 233344556787664
No 23
>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk. Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom
Probab=97.04 E-value=0.00044 Score=49.70 Aligned_cols=50 Identities=26% Similarity=0.457 Sum_probs=38.5
Q ss_pred cCccccceeecCCCcceEEEEeCCCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLRNSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
.+|.-.+.||.|++|.||++...++..+++|.+.........++..|+.+
T Consensus 6 ~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~ 55 (261)
T cd05148 6 EEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQA 55 (261)
T ss_pred HHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHH
Confidence 34555677999999999999998889999999865444345667777654
No 24
>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]
Probab=97.00 E-value=0.0012 Score=49.87 Aligned_cols=38 Identities=29% Similarity=0.534 Sum_probs=30.1
Q ss_pred ccccceeecCCCcceEEEEeCC-CCEEEEEEecCCCCCC
Q 043043 106 FDRKLVMGKGAFGNVYRGTLRN-SMKVAVKRGETGSGQG 143 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~~-g~~vaVK~l~~~~~~~ 143 (154)
+...+++|.|.||.||+|.+.+ +..||||+........
T Consensus 26 ~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~k 64 (364)
T KOG0658|consen 26 YEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRYK 64 (364)
T ss_pred EEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCCcC
Confidence 4556899999999999999854 5789999996554443
No 25
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=97.00 E-value=0.0003 Score=46.65 Aligned_cols=19 Identities=21% Similarity=0.149 Sum_probs=11.3
Q ss_pred ceeEEEehhHHHHHHHHHH
Q 043043 20 HFMAVVGSVLACSVLICIL 38 (154)
Q Consensus 20 ~~~~ii~~~v~~~vll~i~ 38 (154)
.+-++||+++|+.+.++++
T Consensus 47 nknIVIGvVVGVGg~ill~ 65 (154)
T PF04478_consen 47 NKNIVIGVVVGVGGPILLG 65 (154)
T ss_pred CccEEEEEEecccHHHHHH
Confidence 4457788877755544433
No 26
>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a
Probab=96.95 E-value=0.0015 Score=47.00 Aligned_cols=49 Identities=27% Similarity=0.434 Sum_probs=37.7
Q ss_pred cCccccceeecCCCcceEEEEeCCCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLRNSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
.+|...+.||+|++|.||++...++..||+|.+.... ....+|.+|+.+
T Consensus 6 ~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~-~~~~~~~~e~~~ 54 (261)
T cd05068 6 TSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGT-MDPKDFLAEAQI 54 (261)
T ss_pred hheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCc-ccHHHHHHHHHH
Confidence 3456668899999999999998777889999986432 235678888764
No 27
>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor
Probab=96.93 E-value=0.00098 Score=48.26 Aligned_cols=49 Identities=22% Similarity=0.483 Sum_probs=35.3
Q ss_pred CccccceeecCCCcceEEEEeC----CCCEEEEEEecCCC-CCChHHHHHHHhh
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLR----NSMKVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~----~g~~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
+|.-.+.||+|+||.||+|.+. .+..||+|.+.... ......|.+|+.+
T Consensus 6 ~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~ 59 (266)
T cd05064 6 SIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALT 59 (266)
T ss_pred HeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHH
Confidence 3555678999999999999863 35689999996432 2223568888765
No 28
>PHA02988 hypothetical protein; Provisional
Probab=96.91 E-value=0.0028 Score=46.56 Aligned_cols=57 Identities=14% Similarity=0.145 Sum_probs=40.0
Q ss_pred ccccHHHHHHhhcCccccceeecCCCcceEEEEeCCCCEEEEEEecCCCCCC---hHHHHHHHhhC
Q 043043 92 LKIPYVEIKFATHNFDRKLVMGKGAFGNVYRGTLRNSMKVAVKRGETGSGQG---LPEFQTAIIVL 154 (154)
Q Consensus 92 ~~~~~~~l~~at~~f~~~~~iG~g~~g~vy~g~l~~g~~vaVK~l~~~~~~~---~~~f~~e~~~l 154 (154)
+.++.+++.. .....||+|+++.||+|.+ +|..||||.+....... .+.|.+|+.+|
T Consensus 13 ~~i~~~~i~~-----~~~~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l 72 (283)
T PHA02988 13 KCIESDDIDK-----YTSVLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEIKNL 72 (283)
T ss_pred eecCHHHcCC-----CCCeEEeeCCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHHHHH
Confidence 3455666632 3346799999999999999 57899999996433222 35677887653
No 29
>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t
Probab=96.91 E-value=0.002 Score=46.27 Aligned_cols=49 Identities=29% Similarity=0.459 Sum_probs=37.6
Q ss_pred cCccccceeecCCCcceEEEEeCCCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLRNSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
++|...+.||+|++|.||++..+++..+++|.+.... ....+|.+|+.+
T Consensus 6 ~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~-~~~~~~~~e~~~ 54 (261)
T cd05034 6 ESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGT-MSPEAFLQEAQI 54 (261)
T ss_pred hheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCc-cCHHHHHHHHHH
Confidence 3455567899999999999998888889999986432 234678888754
No 30
>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=96.90 E-value=0.00067 Score=48.72 Aligned_cols=48 Identities=29% Similarity=0.321 Sum_probs=35.6
Q ss_pred ccccceeecCCCcceEEEEeC-CCCEEEEEEecC---CCCCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGET---GSGQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~---~~~~~~~~f~~e~~~ 153 (154)
|.-.+.||+|.||.||.++-+ ++-.||+|.+.. ...+-..++.+|+++
T Consensus 24 feigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEI 75 (281)
T KOG0580|consen 24 FEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEI 75 (281)
T ss_pred ccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEe
Confidence 555678999999999999985 456899999942 233345677777764
No 31
>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor
Probab=96.90 E-value=0.0011 Score=49.25 Aligned_cols=49 Identities=31% Similarity=0.476 Sum_probs=34.8
Q ss_pred CccccceeecCCCcceEEEEeC-CCC----EEEEEEecCCC-CCChHHHHHHHhh
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLR-NSM----KVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~-~g~----~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
.|...+.||+|+||.||+|.+. ++. .||+|.+.... .....+|.+|+.+
T Consensus 8 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~ 62 (316)
T cd05108 8 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYV 62 (316)
T ss_pred hceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHH
Confidence 4677788999999999999863 333 48999986432 2234567777654
No 32
>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h
Probab=96.90 E-value=0.0016 Score=46.79 Aligned_cols=48 Identities=29% Similarity=0.404 Sum_probs=36.3
Q ss_pred ccccceeecCCCcceEEEEeCCCCEEEEEEecCCCCCChHHHHHHHhhC
Q 043043 106 FDRKLVMGKGAFGNVYRGTLRNSMKVAVKRGETGSGQGLPEFQTAIIVL 154 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~~g~~vaVK~l~~~~~~~~~~f~~e~~~l 154 (154)
|.....||+|+||.||++.+.++..+|+|.+... .....+|.+|+++|
T Consensus 6 ~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~-~~~~~~~~~e~~~l 53 (256)
T cd05114 6 LTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEG-AMSEEDFIEEAKVM 53 (256)
T ss_pred cEEeeEecCCcCceEEEEEeccCceEEEEecccC-CccHHHHHHHHHHH
Confidence 4445679999999999999988888999988532 23346788887653
No 33
>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]
Probab=96.89 E-value=0.0013 Score=48.02 Aligned_cols=32 Identities=28% Similarity=0.553 Sum_probs=26.4
Q ss_pred ccceeecCCCcceEEEEe-CCCCEEEEEEecCC
Q 043043 108 RKLVMGKGAFGNVYRGTL-RNSMKVAVKRGETG 139 (154)
Q Consensus 108 ~~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~ 139 (154)
....+|+|.||.||+|+= ..|+.||+|++...
T Consensus 6 ~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~ 38 (318)
T KOG0659|consen 6 KLEKLGEGTYGVVYKARDTETGKRVAIKKIKLG 38 (318)
T ss_pred hhhhhcCcceEEEEEEEecCCCcEEEEEEeecc
Confidence 346799999999999974 56889999999644
No 34
>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment
Probab=96.87 E-value=0.0014 Score=47.33 Aligned_cols=50 Identities=32% Similarity=0.494 Sum_probs=36.1
Q ss_pred cCccccceeecCCCcceEEEEeCC----CCEEEEEEecCCC-CCChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLRN----SMKVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~~----g~~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
++|...+.||+|+||.||+|.... ...||+|.+.... .....+|..|+.+
T Consensus 4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~ 58 (266)
T cd05033 4 SYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASI 58 (266)
T ss_pred HHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHH
Confidence 346667889999999999999843 3579999986432 2234568877754
No 35
>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k
Probab=96.86 E-value=0.0013 Score=48.49 Aligned_cols=49 Identities=27% Similarity=0.323 Sum_probs=34.6
Q ss_pred ccccceeecCCCcceEEEEeCC-----------------CCEEEEEEecCCC-CCChHHHHHHHhhC
Q 043043 106 FDRKLVMGKGAFGNVYRGTLRN-----------------SMKVAVKRGETGS-GQGLPEFQTAIIVL 154 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~~-----------------g~~vaVK~l~~~~-~~~~~~f~~e~~~l 154 (154)
+...+.||+|+||.||++..++ +..||+|.+.... .....+|.+|+++|
T Consensus 7 ~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l 73 (304)
T cd05096 7 LLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKIL 73 (304)
T ss_pred CeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHH
Confidence 4455789999999999998642 2369999986432 22345788888653
No 36
>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V
Probab=96.85 E-value=0.00071 Score=50.76 Aligned_cols=50 Identities=24% Similarity=0.356 Sum_probs=34.9
Q ss_pred cCccccceeecCCCcceEEEEe------CCCCEEEEEEecCCCC-CChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTL------RNSMKVAVKRGETGSG-QGLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l------~~g~~vaVK~l~~~~~-~~~~~f~~e~~~ 153 (154)
++|...+.||+|+||.||++.. ..+..||+|.+..... .....|.+|+.+
T Consensus 7 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~ 63 (338)
T cd05102 7 DRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKI 63 (338)
T ss_pred hHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHH
Confidence 3455567899999999999974 2346799999964322 223467778764
No 37
>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit. Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce
Probab=96.84 E-value=0.0013 Score=50.41 Aligned_cols=49 Identities=27% Similarity=0.314 Sum_probs=34.6
Q ss_pred CccccceeecCCCcceEEEEe------CCCCEEEEEEecCCC-CCChHHHHHHHhh
Q 043043 105 NFDRKLVMGKGAFGNVYRGTL------RNSMKVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l------~~g~~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
+|...+.||+|+||.||++.. ..+..||||.+.... ......|.+|+.+
T Consensus 36 ~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~i 91 (375)
T cd05104 36 RLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKV 91 (375)
T ss_pred HeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHH
Confidence 455568899999999999874 235689999996332 2233567778765
No 38
>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3. Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th
Probab=96.84 E-value=0.0014 Score=47.70 Aligned_cols=48 Identities=27% Similarity=0.378 Sum_probs=35.6
Q ss_pred ccccceeecCCCcceEEEEeC-----CCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLR-----NSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~-----~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
+.....||+|+||.||++... ++..+++|.+..........|.+|+++
T Consensus 6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~ 58 (284)
T cd05081 6 LKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEI 58 (284)
T ss_pred ceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHH
Confidence 445577999999999999853 467899999865444344567788764
No 39
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=96.84 E-value=0.0012 Score=52.63 Aligned_cols=45 Identities=29% Similarity=0.481 Sum_probs=36.3
Q ss_pred ceeecCCCcceEEEEe-CCCCEEEEEEecCC--CCCChHHHHHHHhhC
Q 043043 110 LVMGKGAFGNVYRGTL-RNSMKVAVKRGETG--SGQGLPEFQTAIIVL 154 (154)
Q Consensus 110 ~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~--~~~~~~~f~~e~~~l 154 (154)
++||+|.||+||-|.- ..|+.||||.++.. ...+..+..+|+.+|
T Consensus 570 evLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaIL 617 (888)
T KOG4236|consen 570 EVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAIL 617 (888)
T ss_pred hhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHH
Confidence 5799999999999986 47899999999643 455567788888764
No 40
>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=96.82 E-value=0.00066 Score=55.07 Aligned_cols=50 Identities=30% Similarity=0.503 Sum_probs=39.5
Q ss_pred cCccccceeecCCCcceEEEEeCC-CCEEEEEEecCCCCCChHHHHHHHhhC
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLRN-SMKVAVKRGETGSGQGLPEFQTAIIVL 154 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~~-g~~vaVK~l~~~~~~~~~~f~~e~~~l 154 (154)
..+...++||-|.||+||.|+|.. ...||||.|... .....+|+.|+.+|
T Consensus 267 tdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKED-tMeveEFLkEAAvM 317 (1157)
T KOG4278|consen 267 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVM 317 (1157)
T ss_pred hheeeeeccCCCcccceeeeeeeccceeeehhhhhhc-chhHHHHHHHHHHH
Confidence 445667899999999999999964 478999999633 34467899998765
No 41
>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase. Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ
Probab=96.81 E-value=0.0015 Score=47.27 Aligned_cols=51 Identities=24% Similarity=0.403 Sum_probs=36.8
Q ss_pred hhcCccccceeecCCCcceEEEEeC-CCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 102 ATHNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 102 at~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
+++.|...+.||+|+||.||+|... .+..+|+|.+... .....++.+|+.+
T Consensus 4 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~-~~~~~~~~~e~~~ 55 (272)
T cd06637 4 PAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVT-GDEEEEIKQEINM 55 (272)
T ss_pred hhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcC-CccHHHHHHHHHH
Confidence 4455666678999999999999875 4678999998543 2334566676654
No 42
>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp
Probab=96.76 E-value=0.0013 Score=49.61 Aligned_cols=49 Identities=22% Similarity=0.331 Sum_probs=34.5
Q ss_pred CccccceeecCCCcceEEEEe------CCCCEEEEEEecCCC-CCChHHHHHHHhh
Q 043043 105 NFDRKLVMGKGAFGNVYRGTL------RNSMKVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l------~~g~~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
+|.....||+|+||.||++.. ..+..||||.+.... ......+.+|+++
T Consensus 8 ~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~ 63 (343)
T cd05103 8 RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKI 63 (343)
T ss_pred HhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHH
Confidence 455567899999999999973 346789999996432 2223457777754
No 43
>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13
Probab=96.76 E-value=0.0036 Score=47.19 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=35.8
Q ss_pred cCccccceeecCCCcceEEEEe-CCCCEEEEEEecCC--CCCChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTL-RNSMKVAVKRGETG--SGQGLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~--~~~~~~~f~~e~~~ 153 (154)
.+|...+.||+|+||.||+|.. .++..+|+|.+... .......+.+|+.+
T Consensus 15 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~ 67 (342)
T cd07879 15 ERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTL 67 (342)
T ss_pred cceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHH
Confidence 5677778899999999999986 46789999998532 12122446666654
No 44
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=96.74 E-value=0.0012 Score=42.46 Aligned_cols=34 Identities=12% Similarity=0.232 Sum_probs=16.7
Q ss_pred ceeEEEehhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 043043 20 HFMAVVGSVLACSVLICILEIVLSFVLIWRKQKP 53 (154)
Q Consensus 20 ~~~~ii~~~v~~~vll~i~~~~~~~~~~~r~~~~ 53 (154)
....|+++++|+++.+++++++++|+.||++++.
T Consensus 62 s~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 62 SEPAIIGIIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp S-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred cccceeehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4445666666666655544445555555555443
No 45
>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r
Probab=96.74 E-value=0.003 Score=45.44 Aligned_cols=46 Identities=30% Similarity=0.432 Sum_probs=35.6
Q ss_pred cccceeecCCCcceEEEEeCCCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 107 DRKLVMGKGAFGNVYRGTLRNSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 107 ~~~~~iG~g~~g~vy~g~l~~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
.-.+.||+|++|.||++..+++..+++|.+..... ...+|.+|+.+
T Consensus 9 ~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~-~~~~~~~E~~~ 54 (260)
T cd05070 9 QLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTM-SPESFLEEAQI 54 (260)
T ss_pred hhhheeccccCceEEEEEecCCceeEEEEecCCCC-CHHHHHHHHHH
Confidence 33467999999999999988888899999864322 34578888764
No 46
>PTZ00284 protein kinase; Provisional
Probab=96.74 E-value=0.0016 Score=51.38 Aligned_cols=41 Identities=29% Similarity=0.393 Sum_probs=32.8
Q ss_pred HHHHhhcCccccceeecCCCcceEEEEeC-CCCEEEEEEecC
Q 043043 98 EIKFATHNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGET 138 (154)
Q Consensus 98 ~l~~at~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~ 138 (154)
++...+.+|...++||+|+||.||++... .+..||||.+..
T Consensus 123 ~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~ 164 (467)
T PTZ00284 123 DIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRN 164 (467)
T ss_pred ccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEec
Confidence 34445677888889999999999999864 567899999853
No 47
>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a
Probab=96.71 E-value=0.0032 Score=45.22 Aligned_cols=50 Identities=24% Similarity=0.316 Sum_probs=37.2
Q ss_pred cCccccceeecCCCcceEEEEeC-CCCEEEEEEecCC---CCCChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETG---SGQGLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~---~~~~~~~f~~e~~~ 153 (154)
++|...+.||+|++|.||++... +|..+++|.+... .......+.+|+++
T Consensus 2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~ 55 (267)
T cd08224 2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDL 55 (267)
T ss_pred CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHH
Confidence 35666788999999999999986 7889999988521 22234567788764
No 48
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=96.70 E-value=0.0028 Score=51.12 Aligned_cols=39 Identities=13% Similarity=0.128 Sum_probs=28.1
Q ss_pred ccCCCCCcceeEEEehhHHHHHHHHHHHHHHHHHHHHhc
Q 043043 12 VVNGPKKKHFMAVVGSVLACSVLICILEIVLSFVLIWRK 50 (154)
Q Consensus 12 ~~~~~~~~~~~~ii~~~v~~~vll~i~~~~~~~~~~~r~ 50 (154)
++....+...|+|+|+++.++++++|++++.+++||+.|
T Consensus 260 P~~~s~~~NlWII~gVlvPv~vV~~Iiiil~~~LCRk~K 298 (684)
T PF12877_consen 260 PPAKSPPNNLWIIAGVLVPVLVVLLIIIILYWKLCRKNK 298 (684)
T ss_pred CCCCCCCCCeEEEehHhHHHHHHHHHHHHHHHHHhcccc
Confidence 444566788999999988888777777666666665543
No 49
>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated
Probab=96.70 E-value=0.0036 Score=45.10 Aligned_cols=48 Identities=23% Similarity=0.398 Sum_probs=34.8
Q ss_pred ccccceeecCCCcceEEEEe-CCCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTL-RNSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
+.....||+|+||.||+|.. .++..+|+|.+..........+.+|+.+
T Consensus 11 y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~ 59 (267)
T cd06646 11 YELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFM 59 (267)
T ss_pred cchhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHH
Confidence 44457799999999999986 5678899999864433334456667654
No 50
>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase). Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It
Probab=96.69 E-value=0.0012 Score=47.97 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=36.3
Q ss_pred cCccccceeecCCCcceEEEEeCC-----CCEEEEEEecCCC-CCChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLRN-----SMKVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~~-----g~~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
.+|...++||+|+||.||+|...+ +..|++|.+.... ......+.+|+.+
T Consensus 6 ~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~ 61 (280)
T cd05043 6 DRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCL 61 (280)
T ss_pred hheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 456667889999999999999865 6789999985432 2223557777654
No 51
>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn. Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa
Probab=96.67 E-value=0.0026 Score=45.71 Aligned_cols=47 Identities=32% Similarity=0.461 Sum_probs=35.9
Q ss_pred ccccceeecCCCcceEEEEeCCCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLRNSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
|.....||+|++|.||++...++..+++|.+.... .....|.+|+.+
T Consensus 8 ~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~-~~~~~~~~e~~~ 54 (261)
T cd05072 8 IKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGT-MSVQAFLEEANL 54 (261)
T ss_pred eEEeeecCCcCCceEEEEEecCCceEEEEEccCCc-hhHHHHHHHHHH
Confidence 45557799999999999999888899999985432 234567777754
No 52
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=96.65 E-value=0.0018 Score=49.03 Aligned_cols=46 Identities=24% Similarity=0.159 Sum_probs=33.6
Q ss_pred cceeecCCCcceEEEEeC-CCCEEEEEEecCCC-CCChHHHHHHHhhC
Q 043043 109 KLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGS-GQGLPEFQTAIIVL 154 (154)
Q Consensus 109 ~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~-~~~~~~f~~e~~~l 154 (154)
.+.||+|+||.||++... ++..||+|.+.... ......|.+|+++|
T Consensus 79 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l 126 (353)
T PLN00034 79 VNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEIL 126 (353)
T ss_pred hhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHH
Confidence 367999999999999864 67899999985322 22235677887653
No 53
>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk
Probab=96.65 E-value=0.0035 Score=44.89 Aligned_cols=47 Identities=34% Similarity=0.445 Sum_probs=35.9
Q ss_pred CccccceeecCCCcceEEEEeCCCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLRNSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
+|...+.||.|.+|.||++... +..|++|.+..... ...+|.+|+.+
T Consensus 7 ~~~~~~~ig~g~~g~v~~~~~~-~~~v~iK~~~~~~~-~~~~~~~e~~~ 53 (256)
T cd05039 7 ELKLGATIGKGEFGDVMLGDYR-GQKVAVKCLKDDST-AAQAFLAEASV 53 (256)
T ss_pred hccceeeeecCCCceEEEEEec-CcEEEEEEeccchh-HHHHHHHHHHH
Confidence 3555678999999999999875 68899999964433 45678888754
No 54
>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src. Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo
Probab=96.62 E-value=0.0034 Score=45.30 Aligned_cols=47 Identities=28% Similarity=0.489 Sum_probs=35.4
Q ss_pred ccccceeecCCCcceEEEEeCCCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLRNSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
|.-...||+|+||.||++...+...||+|.+... .....+|.+|+++
T Consensus 8 ~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~-~~~~~~~~~E~~~ 54 (262)
T cd05071 8 LRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQV 54 (262)
T ss_pred eeEeeecCCCCCCcEEEEEecCCceEEEEecccC-ccCHHHHHHHHHH
Confidence 4445679999999999999877778999999642 2234578888764
No 55
>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14
Probab=96.60 E-value=0.0038 Score=47.16 Aligned_cols=60 Identities=18% Similarity=0.143 Sum_probs=43.6
Q ss_pred ccHHHHHHhhcCccccceeecCCCcceEEEEe-CCCCEEEEEEecCC--CCCChHHHHHHHhh
Q 043043 94 IPYVEIKFATHNFDRKLVMGKGAFGNVYRGTL-RNSMKVAVKRGETG--SGQGLPEFQTAIIV 153 (154)
Q Consensus 94 ~~~~~l~~at~~f~~~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~--~~~~~~~f~~e~~~ 153 (154)
....++...+.+|.....||+|+||.||++.. .++..||+|++... .......+.+|+++
T Consensus 7 ~~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~ 69 (345)
T cd07877 7 ELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRL 69 (345)
T ss_pred hHHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHH
Confidence 34456667778888888999999999999975 46789999998532 12223456667654
No 56
>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt
Probab=96.59 E-value=0.0019 Score=46.88 Aligned_cols=49 Identities=29% Similarity=0.388 Sum_probs=35.4
Q ss_pred ccccceeecCCCcceEEEEeCC------CCEEEEEEecCCCCC-ChHHHHHHHhhC
Q 043043 106 FDRKLVMGKGAFGNVYRGTLRN------SMKVAVKRGETGSGQ-GLPEFQTAIIVL 154 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~~------g~~vaVK~l~~~~~~-~~~~f~~e~~~l 154 (154)
|...+.||+|+||.||++...+ +..+|+|.+...... ...+|.+|+++|
T Consensus 7 ~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l 62 (280)
T cd05049 7 IVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELL 62 (280)
T ss_pred hhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHH
Confidence 4445779999999999998743 368999998644332 346788887653
No 57
>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=96.59 E-value=0.0028 Score=49.05 Aligned_cols=48 Identities=25% Similarity=0.473 Sum_probs=33.7
Q ss_pred ccccceeecCCCcceEEEEeC-CCCEEEEEEecCCCCC-ChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGSGQ-GLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~~~-~~~~f~~e~~~ 153 (154)
|.....||+|.||.||+|... .+..||+|.++.+... ...+..+|+.+
T Consensus 15 ~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~ 64 (467)
T KOG0201|consen 15 YTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISV 64 (467)
T ss_pred cccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHH
Confidence 344467999999999999974 3578999999754333 33455566543
No 58
>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-
Probab=96.58 E-value=0.0032 Score=48.80 Aligned_cols=51 Identities=27% Similarity=0.387 Sum_probs=35.6
Q ss_pred cCccccceeecCCCcceEEEEeC------CCCEEEEEEecCCC-CCChHHHHHHHhhC
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLR------NSMKVAVKRGETGS-GQGLPEFQTAIIVL 154 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~------~g~~vaVK~l~~~~-~~~~~~f~~e~~~l 154 (154)
..|...++||+|+||.||+|... .+..||||++.... ......|.+|+++|
T Consensus 37 ~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l 94 (400)
T cd05105 37 DGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIM 94 (400)
T ss_pred cceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHH
Confidence 44555678999999999999852 13469999996432 22345688888653
No 59
>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase. Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an
Probab=96.57 E-value=0.0054 Score=45.29 Aligned_cols=50 Identities=18% Similarity=0.267 Sum_probs=35.6
Q ss_pred cCccccceeecCCCcceEEEEeC-CCCEEEEEEecCCC-CCChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
.+|...+.||+|+||.||++.-. ++..+|+|.+.... ......+.+|+.+
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~ 56 (303)
T cd07869 5 DSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASL 56 (303)
T ss_pred ccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHH
Confidence 34555678999999999999875 67899999985332 2223456667654
No 60
>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase. Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa
Probab=96.53 E-value=0.0035 Score=45.10 Aligned_cols=48 Identities=31% Similarity=0.460 Sum_probs=36.5
Q ss_pred CccccceeecCCCcceEEEEeCCCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLRNSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
.+...+.||+|+||.||++...++..+++|.+.... .....|.+|+++
T Consensus 7 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~-~~~~~~~~e~~~ 54 (260)
T cd05073 7 SLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANV 54 (260)
T ss_pred ceeEEeEecCccceEEEEEEecCCccEEEEecCCCh-hHHHHHHHHHHH
Confidence 455667899999999999998777889999885332 234568888764
No 61
>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D
Probab=96.51 E-value=0.0028 Score=49.22 Aligned_cols=49 Identities=27% Similarity=0.377 Sum_probs=34.5
Q ss_pred ccccceeecCCCcceEEEEeC------CCCEEEEEEecCCCCC-ChHHHHHHHhhC
Q 043043 106 FDRKLVMGKGAFGNVYRGTLR------NSMKVAVKRGETGSGQ-GLPEFQTAIIVL 154 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~------~g~~vaVK~l~~~~~~-~~~~f~~e~~~l 154 (154)
+.....||+|+||.||++... .+..||+|++...... ....|.+|+++|
T Consensus 39 ~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l 94 (401)
T cd05107 39 LVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIM 94 (401)
T ss_pred eehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHH
Confidence 444577999999999999864 2357999999643222 234677887653
No 62
>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]
Probab=96.50 E-value=0.0029 Score=47.11 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=24.2
Q ss_pred ceeecCCCcceEEEEeC-CCCEEEEEEec
Q 043043 110 LVMGKGAFGNVYRGTLR-NSMKVAVKRGE 137 (154)
Q Consensus 110 ~~iG~g~~g~vy~g~l~-~g~~vaVK~l~ 137 (154)
-++|+|+||.|||++=+ .|+.||||++-
T Consensus 8 gkvGEGSYGvV~KCrnk~TgqIVAIKkF~ 36 (396)
T KOG0593|consen 8 GKVGEGSYGVVMKCRNKDTGQIVAIKKFV 36 (396)
T ss_pred hccccCcceEEEEeccCCcccEEEEEeec
Confidence 45899999999999875 48899999993
No 63
>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase. Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ
Probab=96.49 E-value=0.0054 Score=43.88 Aligned_cols=47 Identities=28% Similarity=0.354 Sum_probs=35.8
Q ss_pred ccccceeecCCCcceEEEEeCCCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLRNSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
|.....||.|++|.||++...++..+++|.+... .....+|.+|+++
T Consensus 6 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~-~~~~~~~~~e~~~ 52 (256)
T cd05112 6 LTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREG-AMSEEDFIEEAQV 52 (256)
T ss_pred eEEEeeecCcccceEEEEEEeCCCeEEEEECCCC-CCCHHHHHHHHHH
Confidence 4445779999999999999877788999988533 2234578888764
No 64
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=96.48 E-value=0.0028 Score=50.57 Aligned_cols=51 Identities=20% Similarity=0.189 Sum_probs=36.5
Q ss_pred hcCccccceeecCCCcceEEEEe-CCCCEEEEEEecCCC--CCChHHHHHHHhh
Q 043043 103 THNFDRKLVMGKGAFGNVYRGTL-RNSMKVAVKRGETGS--GQGLPEFQTAIIV 153 (154)
Q Consensus 103 t~~f~~~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~~--~~~~~~f~~e~~~ 153 (154)
..+|...+.||+|+||.||++.. .++..||+|.+.... ......+.+|+..
T Consensus 31 ~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~ 84 (496)
T PTZ00283 31 AKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCC 84 (496)
T ss_pred CCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHH
Confidence 35666678899999999999975 568999999985432 2223456666643
No 65
>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament
Probab=96.47 E-value=0.0071 Score=44.35 Aligned_cols=48 Identities=15% Similarity=0.226 Sum_probs=34.4
Q ss_pred ccccceeecCCCcceEEEEeC-CCCEEEEEEecCCC-CCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
|...+.||.|+||.||++.-. ++..||+|.+.... ......+.+|+.+
T Consensus 7 y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~ 56 (288)
T cd07871 7 YVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSL 56 (288)
T ss_pred ceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHH
Confidence 455678999999999999874 57889999985332 2233456677654
No 66
>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin. Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear
Probab=96.45 E-value=0.0032 Score=45.89 Aligned_cols=59 Identities=20% Similarity=0.253 Sum_probs=42.7
Q ss_pred ccHHHHHHhhcCccccceeecCCCcceEEEEeC-CCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 94 IPYVEIKFATHNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 94 ~~~~~l~~at~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
+.++.+..++++|.....||+|+||.||++... ++..+++|.+.... ....++..|+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~-~~~~~~~~e~~~ 67 (286)
T cd06638 8 IIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIH-DIDEEIEAEYNI 67 (286)
T ss_pred EEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeecccc-chHHHHHHHHHH
Confidence 445666777788888889999999999999874 56889999885422 223456666543
No 67
>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin. Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre
Probab=96.42 E-value=0.0037 Score=45.73 Aligned_cols=58 Identities=22% Similarity=0.242 Sum_probs=43.2
Q ss_pred ccHHHHHHhhcCccccceeecCCCcceEEEEe-CCCCEEEEEEecCCCCCChHHHHHHHh
Q 043043 94 IPYVEIKFATHNFDRKLVMGKGAFGNVYRGTL-RNSMKVAVKRGETGSGQGLPEFQTAII 152 (154)
Q Consensus 94 ~~~~~l~~at~~f~~~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~~~~~~~~f~~e~~ 152 (154)
+++.++..++++|...+.||+|.||.||++.. .++..+|+|.+..... ...++.+|+.
T Consensus 12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~~-~~~~~~~e~~ 70 (291)
T cd06639 12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISD-VDEEIEAEYN 70 (291)
T ss_pred hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEeccccc-HHHHHHHHHH
Confidence 56677778888999889999999999999987 4678899999853221 1234555553
No 68
>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi
Probab=96.40 E-value=0.0073 Score=45.51 Aligned_cols=50 Identities=20% Similarity=0.175 Sum_probs=37.6
Q ss_pred cCccccceeecCCCcceEEEEe-CCCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTL-RNSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
.+|...+.||.|+||.||++.- .++..|++|.+........+.+.+|+++
T Consensus 5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~ 55 (342)
T cd07854 5 SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKI 55 (342)
T ss_pred cceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHH
Confidence 3466667899999999999986 4578999999865444445667777754
No 69
>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play
Probab=96.40 E-value=0.0068 Score=44.89 Aligned_cols=48 Identities=15% Similarity=0.228 Sum_probs=34.2
Q ss_pred ccccceeecCCCcceEEEEeC-CCCEEEEEEecCCC-CCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
|...+.||+|+||.||++... .+..+|+|.+.... ......+.+|+++
T Consensus 8 y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~ 57 (309)
T cd07872 8 YIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSL 57 (309)
T ss_pred eEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHH
Confidence 455577999999999999875 56789999986432 2223456667654
No 70
>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti
Probab=96.39 E-value=0.0033 Score=48.15 Aligned_cols=50 Identities=26% Similarity=0.379 Sum_probs=34.7
Q ss_pred cCccccceeecCCCcceEEEEe------CCCCEEEEEEecCCCCC-ChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTL------RNSMKVAVKRGETGSGQ-GLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l------~~g~~vaVK~l~~~~~~-~~~~f~~e~~~ 153 (154)
.+|...+.||+|+||.||++.. .++..||+|++...... ....+.+|+++
T Consensus 38 ~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~i 94 (374)
T cd05106 38 DNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKI 94 (374)
T ss_pred HHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHH
Confidence 3466668899999999999874 23457999999643222 23457777764
No 71
>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome. Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds
Probab=96.39 E-value=0.0054 Score=44.12 Aligned_cols=45 Identities=31% Similarity=0.358 Sum_probs=34.6
Q ss_pred ccceeecCCCcceEEEEeCCCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 108 RKLVMGKGAFGNVYRGTLRNSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 108 ~~~~iG~g~~g~vy~g~l~~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
....||+|++|.||++...++..+|+|.+... .....+|.+|+.+
T Consensus 8 ~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~-~~~~~~~~~e~~~ 52 (256)
T cd05113 8 FLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKV 52 (256)
T ss_pred EeeEecCcccceEEEEEecCCCcEEEEEcCCC-cccHHHHHHHHHH
Confidence 34569999999999999877777999988633 2335678888765
No 72
>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely
Probab=96.38 E-value=0.0082 Score=44.05 Aligned_cols=51 Identities=22% Similarity=0.270 Sum_probs=36.6
Q ss_pred hcCccccceeecCCCcceEEEEeC-CCCEEEEEEecCCC--CCChHHHHHHHhh
Q 043043 103 THNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGS--GQGLPEFQTAIIV 153 (154)
Q Consensus 103 t~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~--~~~~~~f~~e~~~ 153 (154)
..+|...+.||+|.+|.||+|... ++..+++|.+.... ......+.+|+++
T Consensus 6 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~ 59 (302)
T cd07864 6 VDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKI 59 (302)
T ss_pred hhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHH
Confidence 355677788999999999999985 57899999995432 2223456666643
No 73
>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase
Probab=96.38 E-value=0.0089 Score=43.02 Aligned_cols=49 Identities=27% Similarity=0.393 Sum_probs=35.5
Q ss_pred CccccceeecCCCcceEEEEeC-CCCEEEEEEecCC---CCCChHHHHHHHhh
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETG---SGQGLPEFQTAIIV 153 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~---~~~~~~~f~~e~~~ 153 (154)
+|.....||+|.||.||++... ++..+|+|.+... .......|.+|+++
T Consensus 3 ~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~ 55 (267)
T cd08228 3 NFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDL 55 (267)
T ss_pred ceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHH
Confidence 4556678999999999999874 6789999988532 12223467777764
No 74
>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=96.36 E-value=0.0072 Score=44.56 Aligned_cols=50 Identities=24% Similarity=0.306 Sum_probs=36.6
Q ss_pred cCccccceeecCCCcceEEEEe-CCCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTL-RNSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
.+|...+.||.|.+|.||++.- .++..||+|.+..........+.+|+.+
T Consensus 19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~ 69 (297)
T cd06656 19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILV 69 (297)
T ss_pred hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHH
Confidence 3455567899999999999985 5688999999964433334556677653
No 75
>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=96.34 E-value=0.0074 Score=48.41 Aligned_cols=48 Identities=23% Similarity=0.297 Sum_probs=38.1
Q ss_pred ccccceeecCCCcceEEEEe-CCCCEEEEEEecC---CCCCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTL-RNSMKVAVKRGET---GSGQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~---~~~~~~~~f~~e~~~ 153 (154)
+...++||+|+|+.||.++- ..|..+|+|.+.. ......+...+|+++
T Consensus 20 Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeI 71 (592)
T KOG0575|consen 20 YKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEI 71 (592)
T ss_pred eeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHH
Confidence 55568899999999999987 8899999999953 234445678888876
No 76
>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored
Probab=96.33 E-value=0.0047 Score=44.56 Aligned_cols=50 Identities=28% Similarity=0.557 Sum_probs=35.7
Q ss_pred cCccccceeecCCCcceEEEEeCC-C---CEEEEEEecCCC-CCChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLRN-S---MKVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~~-g---~~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
.+|+..+.||+|++|.||++.... + ..+++|.+.... .....+|..|+++
T Consensus 5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~ 59 (268)
T cd05063 5 SHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASI 59 (268)
T ss_pred HHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHH
Confidence 356777899999999999999852 2 368999985432 2224567777754
No 77
>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly
Probab=96.32 E-value=0.0054 Score=44.69 Aligned_cols=48 Identities=29% Similarity=0.391 Sum_probs=33.7
Q ss_pred ccccceeecCCCcceEEEEe-----CCCCEEEEEEecCCCC-CChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTL-----RNSMKVAVKRGETGSG-QGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l-----~~g~~vaVK~l~~~~~-~~~~~f~~e~~~ 153 (154)
|.-...||+|+||.||+|.. ..+..+++|.+..... ....+|.+|+++
T Consensus 7 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~ 60 (283)
T cd05090 7 VRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASL 60 (283)
T ss_pred ceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHH
Confidence 34446799999999999985 2457899999964322 223567777764
No 78
>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase. Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess
Probab=96.29 E-value=0.009 Score=43.69 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=36.1
Q ss_pred hcCccccceeecCCCcceEEEEeC-CCCEEEEEEecCCC-CCChHHHHHHHhh
Q 043043 103 THNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 103 t~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
+.+|.....||+|+||.||+|... ++..+++|.+.... ......+.+|+.+
T Consensus 4 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~ 56 (291)
T cd07870 4 ATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASL 56 (291)
T ss_pred cceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHH
Confidence 355666788999999999999864 57899999985432 2222356666643
No 79
>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut
Probab=96.28 E-value=0.0067 Score=43.99 Aligned_cols=47 Identities=23% Similarity=0.294 Sum_probs=34.3
Q ss_pred cccceeecCCCcceEEEEeC-----CCCEEEEEEecCCCCC-ChHHHHHHHhh
Q 043043 107 DRKLVMGKGAFGNVYRGTLR-----NSMKVAVKRGETGSGQ-GLPEFQTAIIV 153 (154)
Q Consensus 107 ~~~~~iG~g~~g~vy~g~l~-----~g~~vaVK~l~~~~~~-~~~~f~~e~~~ 153 (154)
...+.||+|+||.||++.+. .+..+|||.+...... ...+|.+|+++
T Consensus 7 ~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~ 59 (284)
T cd05038 7 KFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEI 59 (284)
T ss_pred hhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHH
Confidence 33467999999999999874 3578999999643332 34578888754
No 80
>PTZ00263 protein kinase A catalytic subunit; Provisional
Probab=96.25 E-value=0.0065 Score=45.59 Aligned_cols=49 Identities=16% Similarity=0.235 Sum_probs=35.3
Q ss_pred CccccceeecCCCcceEEEEeC-CCCEEEEEEecCC---CCCChHHHHHHHhh
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETG---SGQGLPEFQTAIIV 153 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~---~~~~~~~f~~e~~~ 153 (154)
+|...+.||+|+||.||++... ++..+|+|.+... .......+.+|+.+
T Consensus 19 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~ 71 (329)
T PTZ00263 19 DFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSI 71 (329)
T ss_pred heEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHH
Confidence 3555678999999999999885 5788999998532 22233557777654
No 81
>PTZ00036 glycogen synthase kinase; Provisional
Probab=96.25 E-value=0.0068 Score=47.55 Aligned_cols=35 Identities=31% Similarity=0.511 Sum_probs=29.2
Q ss_pred hcCccccceeecCCCcceEEEEeC-CCCEEEEEEec
Q 043043 103 THNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGE 137 (154)
Q Consensus 103 t~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~ 137 (154)
..+|...++||+|+||.||+|... .+..||+|++.
T Consensus 65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~ 100 (440)
T PTZ00036 65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVL 100 (440)
T ss_pred CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEe
Confidence 345777788999999999999874 57899999884
No 82
>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows
Probab=96.22 E-value=0.0075 Score=43.28 Aligned_cols=47 Identities=28% Similarity=0.360 Sum_probs=35.0
Q ss_pred ccccceeecCCCcceEEEEeCCCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLRNSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
|...+.||+|.+|.||++...++..+++|.+... .....+|.+|+++
T Consensus 6 ~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~-~~~~~~~~~e~~~ 52 (256)
T cd05059 6 LTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREG-AMSEDDFIEEAKV 52 (256)
T ss_pred cchhhhhccCCCceEEEeEecCCccEEEEEeccC-CCCHHHHHHHHHH
Confidence 4445779999999999999877778999988532 2234568888764
No 83
>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=96.22 E-value=0.0064 Score=45.67 Aligned_cols=49 Identities=27% Similarity=0.453 Sum_probs=36.4
Q ss_pred ccccceeecCCCcceEEEEeCC-CCEEEEEEecCCCCCChHHHHHHHhhC
Q 043043 106 FDRKLVMGKGAFGNVYRGTLRN-SMKVAVKRGETGSGQGLPEFQTAIIVL 154 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~~-g~~vaVK~l~~~~~~~~~~f~~e~~~l 154 (154)
+...+.||+|.||.||.+...+ |...|||..+..+....+.+.+|+.+|
T Consensus 19 ~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL 68 (313)
T KOG0198|consen 19 WSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRIL 68 (313)
T ss_pred hhhhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHH
Confidence 4445779999999999999854 889999999654332245577777654
No 84
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=96.22 E-value=0.0084 Score=47.15 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=27.6
Q ss_pred cceeecCCCcceEEEEeCCCCEEEEEEecCC
Q 043043 109 KLVMGKGAFGNVYRGTLRNSMKVAVKRGETG 139 (154)
Q Consensus 109 ~~~iG~g~~g~vy~g~l~~g~~vaVK~l~~~ 139 (154)
.+-||.|++|.||+|++.+|..||||.....
T Consensus 122 ~~plasaSigQVh~A~l~~G~~VaVKv~rp~ 152 (437)
T TIGR01982 122 EKPLAAASIAQVHRARLVDGKEVAVKVLRPG 152 (437)
T ss_pred CcceeeeehhheEEEEecCCCEEEEEeeCCC
Confidence 3569999999999999999999999998644
No 85
>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase. Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well
Probab=96.21 E-value=0.0044 Score=45.05 Aligned_cols=51 Identities=29% Similarity=0.495 Sum_probs=36.4
Q ss_pred hcCccccceeecCCCcceEEEEeCC------CCEEEEEEecCCC-CCChHHHHHHHhh
Q 043043 103 THNFDRKLVMGKGAFGNVYRGTLRN------SMKVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 103 t~~f~~~~~iG~g~~g~vy~g~l~~------g~~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
+++|...+.||+|++|.||++...+ +..|++|...... .....+|..|+.+
T Consensus 5 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~ 62 (277)
T cd05036 5 RDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALI 62 (277)
T ss_pred HHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3557777889999999999998854 4578899875332 2233568887654
No 86
>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1. Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U
Probab=96.20 E-value=0.0066 Score=45.55 Aligned_cols=55 Identities=18% Similarity=0.129 Sum_probs=39.6
Q ss_pred HHHhhcCccccceeecCCCcceEEEEeC-CCCEEEEEEecCC--CCCChHHHHHHHhh
Q 043043 99 IKFATHNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETG--SGQGLPEFQTAIIV 153 (154)
Q Consensus 99 l~~at~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~--~~~~~~~f~~e~~~ 153 (154)
+...+++|...+.||.|+||.||++.-. ++..+|+|++... .......+..|+++
T Consensus 5 ~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~ 62 (328)
T cd07856 5 VFEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKL 62 (328)
T ss_pred eeccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHH
Confidence 3445677888889999999999999754 6789999988432 22233566677654
No 87
>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the
Probab=96.20 E-value=0.011 Score=43.15 Aligned_cols=49 Identities=16% Similarity=0.248 Sum_probs=34.8
Q ss_pred CccccceeecCCCcceEEEEeC-CCCEEEEEEecCCC-CCChHHHHHHHhh
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
+|.....||+|++|.||++... ++..+|+|.+.... ......+.+|+++
T Consensus 6 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~ 56 (291)
T cd07844 6 TYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASL 56 (291)
T ss_pred ceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHH
Confidence 3455578999999999999875 57899999985332 2223456667654
No 88
>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=96.20 E-value=0.0009 Score=49.31 Aligned_cols=45 Identities=29% Similarity=0.489 Sum_probs=35.0
Q ss_pred ceeecCCCcceEEEE-eCCCCEEEEEEecCC--CCCChHHHHHHHhhC
Q 043043 110 LVMGKGAFGNVYRGT-LRNSMKVAVKRGETG--SGQGLPEFQTAIIVL 154 (154)
Q Consensus 110 ~~iG~g~~g~vy~g~-l~~g~~vaVK~l~~~--~~~~~~~f~~e~~~l 154 (154)
.+||+|.||+|||.. +.+|..||.|.++.+ +.....+...|+.+|
T Consensus 25 ~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lL 72 (375)
T KOG0591|consen 25 KKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLL 72 (375)
T ss_pred HHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHH
Confidence 569999999999975 578999999999643 344456788888764
No 89
>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]
Probab=96.16 E-value=0.0046 Score=50.31 Aligned_cols=49 Identities=29% Similarity=0.545 Sum_probs=36.0
Q ss_pred ccccceeecCCCcceEEEEeCC---C--CEEEEEEecC-CCCCChHHHHHHHhhC
Q 043043 106 FDRKLVMGKGAFGNVYRGTLRN---S--MKVAVKRGET-GSGQGLPEFQTAIIVL 154 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~~---g--~~vaVK~l~~-~~~~~~~~f~~e~~~l 154 (154)
.....+||.|.||.||+|++.+ | .-||||.-.. ....+...|.+|+-+|
T Consensus 391 Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iM 445 (974)
T KOG4257|consen 391 ITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIM 445 (974)
T ss_pred ccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHH
Confidence 3455789999999999999832 2 4689998854 3444467799998654
No 90
>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]
Probab=96.11 E-value=0.0042 Score=49.93 Aligned_cols=46 Identities=26% Similarity=0.504 Sum_probs=33.2
Q ss_pred cceeecCCCcceEEEEeC-CCCEEEEEEecCC--CCCChHHHHHHHhhC
Q 043043 109 KLVMGKGAFGNVYRGTLR-NSMKVAVKRGETG--SGQGLPEFQTAIIVL 154 (154)
Q Consensus 109 ~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~--~~~~~~~f~~e~~~l 154 (154)
...||+|.||.||||+=+ .+..||+|.+... .....+...+|++++
T Consensus 7 ~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~ 55 (808)
T KOG0597|consen 7 YEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRIL 55 (808)
T ss_pred HHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHH
Confidence 356999999999999865 4578999999533 222335577787763
No 91
>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]
Probab=96.11 E-value=0.0037 Score=47.11 Aligned_cols=48 Identities=25% Similarity=0.349 Sum_probs=32.8
Q ss_pred ccccceeecCCCcceEEEEe-CCCCEEEEEEecCCCCC-C-hHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTL-RNSMKVAVKRGETGSGQ-G-LPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~~~~-~-~~~f~~e~~~ 153 (154)
|...|.|++|.||.||+|.= ..+..||.|++...... . .-.-++|+.+
T Consensus 78 fe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIni 128 (419)
T KOG0663|consen 78 FEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINI 128 (419)
T ss_pred HHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHH
Confidence 44457899999999999985 34689999999643221 1 1234566654
No 92
>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase. Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays
Probab=96.10 E-value=0.0076 Score=43.41 Aligned_cols=47 Identities=32% Similarity=0.486 Sum_probs=35.4
Q ss_pred ccccceeecCCCcceEEEEeC-CCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
|...+.||+|.+|.||++... .+..+++|.+... .....+|.+|+++
T Consensus 8 ~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~-~~~~~~~~~e~~~ 55 (263)
T cd05052 8 ITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAV 55 (263)
T ss_pred eEEeeecCCcccceEEEEEEecCCceEEEEEecCC-chHHHHHHHHHHH
Confidence 556678999999999999975 4788999998532 2234567777764
No 93
>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase. Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M
Probab=96.10 E-value=0.0051 Score=44.94 Aligned_cols=50 Identities=28% Similarity=0.361 Sum_probs=35.7
Q ss_pred cCccccceeecCCCcceEEEEeC------CCCEEEEEEecCC-CCCChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLR------NSMKVAVKRGETG-SGQGLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~------~g~~vaVK~l~~~-~~~~~~~f~~e~~~ 153 (154)
++|.....||+|+||.||++..+ .+..+|+|.+... ......+|.+|+.+
T Consensus 5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~ 61 (288)
T cd05050 5 NNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAAL 61 (288)
T ss_pred HhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHH
Confidence 45666788999999999999863 3578999998533 22223568777754
No 94
>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2. Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve
Probab=96.09 E-value=0.0067 Score=44.11 Aligned_cols=48 Identities=27% Similarity=0.451 Sum_probs=32.8
Q ss_pred CccccceeecCCCcceEEEEe-CCCC----EEEEEEecCCCC-CChHHHHHHHh
Q 043043 105 NFDRKLVMGKGAFGNVYRGTL-RNSM----KVAVKRGETGSG-QGLPEFQTAII 152 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l-~~g~----~vaVK~l~~~~~-~~~~~f~~e~~ 152 (154)
.|...+.||+|+||.||+|.. +++. .||+|.+..... ....++.+|+.
T Consensus 8 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~ 61 (279)
T cd05109 8 ELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAY 61 (279)
T ss_pred heeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHH
Confidence 355668899999999999985 3444 489999854322 22345666654
No 95
>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly
Probab=96.07 E-value=0.005 Score=45.06 Aligned_cols=49 Identities=29% Similarity=0.396 Sum_probs=35.0
Q ss_pred CccccceeecCCCcceEEEEeC------CCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLR------NSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~------~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
+|...+.||+|+||.||++... ++..+|+|.+..........|.+|+++
T Consensus 6 ~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~ 60 (288)
T cd05093 6 NIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAEL 60 (288)
T ss_pred HeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHH
Confidence 4566688999999999999752 235689998864433334568888765
No 96
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=96.05 E-value=0.0079 Score=48.84 Aligned_cols=36 Identities=33% Similarity=0.547 Sum_probs=30.3
Q ss_pred hhcCccccceeecCCCcceEEEEeCC-----CCEEEEEEec
Q 043043 102 ATHNFDRKLVMGKGAFGNVYRGTLRN-----SMKVAVKRGE 137 (154)
Q Consensus 102 at~~f~~~~~iG~g~~g~vy~g~l~~-----g~~vaVK~l~ 137 (154)
..++|...+.||+|+||.||+|...+ +..||+|++.
T Consensus 130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~ 170 (566)
T PLN03225 130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKAT 170 (566)
T ss_pred ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEec
Confidence 44677788899999999999999854 5789999875
No 97
>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re
Probab=96.04 E-value=0.01 Score=42.74 Aligned_cols=49 Identities=24% Similarity=0.372 Sum_probs=34.6
Q ss_pred CccccceeecCCCcceEEEEeC-CCCEEEEEEecCCC--CC---ChHHHHHHHhh
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGS--GQ---GLPEFQTAIIV 153 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~--~~---~~~~f~~e~~~ 153 (154)
+|...++||+|+||.||.+... ++..|++|.+.... .. ....|.+|+.+
T Consensus 3 ~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~ 57 (265)
T cd06652 3 NWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQL 57 (265)
T ss_pred cceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHH
Confidence 5666788999999999999874 57899999885321 11 12356667654
No 98
>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]
Probab=96.04 E-value=0.0053 Score=46.00 Aligned_cols=31 Identities=29% Similarity=0.446 Sum_probs=25.7
Q ss_pred cceeecCCCcceEEEEe-CCCCEEEEEEecCC
Q 043043 109 KLVMGKGAFGNVYRGTL-RNSMKVAVKRGETG 139 (154)
Q Consensus 109 ~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~ 139 (154)
.+.||+|.||.||+|+- ..|..||+|++...
T Consensus 16 ~eklGeGtyg~Vykar~~~~g~~VALKkirl~ 47 (323)
T KOG0594|consen 16 VEKLGEGTYGVVYKARSKRTGKFVALKKIRLE 47 (323)
T ss_pred HHHhCCCCceEEEEEEEecCCCEEEEEEEecc
Confidence 35599999999999986 46789999999543
No 99
>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an
Probab=96.02 E-value=0.013 Score=42.16 Aligned_cols=47 Identities=28% Similarity=0.476 Sum_probs=34.7
Q ss_pred ccccceeecCCCcceEEEEeCCCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLRNSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
+.-...||+|++|.||++...++..+++|.+.... .....|.+|+.+
T Consensus 8 ~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~-~~~~~~~~E~~~ 54 (260)
T cd05069 8 LRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGT-MMPEAFLQEAQI 54 (260)
T ss_pred eeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCC-ccHHHHHHHHHH
Confidence 33446799999999999998777789999885432 234567777754
No 100
>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4. Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s
Probab=96.02 E-value=0.0085 Score=43.37 Aligned_cols=50 Identities=22% Similarity=0.377 Sum_probs=35.7
Q ss_pred cCccccceeecCCCcceEEEEeC------CCCEEEEEEecCCCCC-ChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLR------NSMKVAVKRGETGSGQ-GLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~------~g~~vaVK~l~~~~~~-~~~~f~~e~~~ 153 (154)
.+|.....||+|+||.||++... +...+++|.+...... ...+|.+|+++
T Consensus 5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~ 61 (275)
T cd05046 5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDM 61 (275)
T ss_pred HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHH
Confidence 34666678999999999999874 2357899988643322 23568888765
No 101
>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=96.02 E-value=0.014 Score=43.01 Aligned_cols=49 Identities=22% Similarity=0.305 Sum_probs=36.1
Q ss_pred CccccceeecCCCcceEEEEe-CCCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 105 NFDRKLVMGKGAFGNVYRGTL-RNSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
+|.....||.|.+|.||++.- .++..+++|.+..........|.+|+.+
T Consensus 21 ~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~ 70 (296)
T cd06654 21 KYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILV 70 (296)
T ss_pred ceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHH
Confidence 345556799999999999985 4678999999965444444567777654
No 102
>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=96.00 E-value=0.014 Score=43.08 Aligned_cols=49 Identities=22% Similarity=0.291 Sum_probs=36.8
Q ss_pred CccccceeecCCCcceEEEEe-CCCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 105 NFDRKLVMGKGAFGNVYRGTL-RNSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
+|.....||.|.+|.||++.- .++..|++|.+..........+.+|+++
T Consensus 20 ~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~ 69 (296)
T cd06655 20 KYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILV 69 (296)
T ss_pred eEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHH
Confidence 456667899999999999975 5678999999865444445567777654
No 103
>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.
Probab=96.00 E-value=0.0054 Score=44.15 Aligned_cols=48 Identities=25% Similarity=0.392 Sum_probs=34.6
Q ss_pred ccccceeecCCCcceEEEEe-CCCCEEEEEEecCCC---CCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTL-RNSMKVAVKRGETGS---GQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~~---~~~~~~f~~e~~~ 153 (154)
|...+.||+|.+|.||++.. .++..++||.+.... .....+|.+|+.+
T Consensus 4 y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~ 55 (267)
T cd08229 4 FRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDL 55 (267)
T ss_pred hhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHH
Confidence 44557799999999999986 578899999885321 2223467777754
No 104
>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int
Probab=96.00 E-value=0.012 Score=42.67 Aligned_cols=48 Identities=29% Similarity=0.484 Sum_probs=33.8
Q ss_pred ccccceeecCCCcceEEEEeC-CCCEEEEEEecCCC-CCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
|...+.||+|+||.||+|... ++..+|+|.+.... ......|.+|+.+
T Consensus 6 ~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~ 55 (277)
T cd06641 6 FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITV 55 (277)
T ss_pred hhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHH
Confidence 444577999999999999864 67889999885322 2223467777654
No 105
>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti
Probab=95.97 E-value=0.0048 Score=44.83 Aligned_cols=48 Identities=27% Similarity=0.427 Sum_probs=35.3
Q ss_pred ccccceeecCCCcceEEEEeC-CCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
|.-...||.|.+|.||++... ++..+++|............|..|+++
T Consensus 7 ~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~ 55 (280)
T cd06611 7 WEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDI 55 (280)
T ss_pred HHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHH
Confidence 444456999999999999985 578899999864433334568788764
No 106
>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is
Probab=95.96 E-value=0.012 Score=44.23 Aligned_cols=50 Identities=24% Similarity=0.220 Sum_probs=35.2
Q ss_pred cCccccceeecCCCcceEEEEe-CCCCEEEEEEecCC--CCCChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTL-RNSMKVAVKRGETG--SGQGLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~--~~~~~~~f~~e~~~ 153 (154)
.+|.....||+|+||.||++.- .++..||||.+... .......+.+|+.+
T Consensus 15 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~ 67 (343)
T cd07878 15 ERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRL 67 (343)
T ss_pred hhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHH
Confidence 4566667899999999999986 45678999998532 11223456667654
No 107
>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase
Probab=95.96 E-value=0.015 Score=43.62 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=35.8
Q ss_pred cCccccceeecCCCcceEEEEe-CCCCEEEEEEecCCC-CCChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTL-RNSMKVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
.+|...+.||+|++|.||+|.- .+|..||+|.+.... ......+.+|+.+
T Consensus 5 ~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~ 56 (336)
T cd07849 5 PRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKI 56 (336)
T ss_pred cceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHH
Confidence 4566678899999999999985 467899999985322 2223456667654
No 108
>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10. Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing
Probab=95.95 E-value=0.015 Score=42.97 Aligned_cols=50 Identities=22% Similarity=0.288 Sum_probs=34.9
Q ss_pred cCccccceeecCCCcceEEEEeC-CCCEEEEEEecCCC--CCChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGS--GQGLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~--~~~~~~f~~e~~~ 153 (154)
.+|...+.||+|.||.||++... +|..||+|.+.... ......+.+|+.+
T Consensus 7 ~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~ 59 (309)
T cd07845 7 TEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITL 59 (309)
T ss_pred cceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHH
Confidence 45667788999999999999874 57899999985322 1112334556543
No 109
>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr
Probab=95.95 E-value=0.0064 Score=43.92 Aligned_cols=48 Identities=29% Similarity=0.502 Sum_probs=33.8
Q ss_pred ccccceeecCCCcceEEEEeCC-C---CEEEEEEecCC-CCCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLRN-S---MKVAVKRGETG-SGQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~~-g---~~vaVK~l~~~-~~~~~~~f~~e~~~ 153 (154)
+...+.||+|+||.||+|...+ + ..+++|.+... ......+|..|+.+
T Consensus 6 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~ 58 (269)
T cd05065 6 VKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASI 58 (269)
T ss_pred eEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3445789999999999999753 2 36999998643 22234568888764
No 110
>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development
Probab=95.95 E-value=0.012 Score=42.45 Aligned_cols=49 Identities=24% Similarity=0.400 Sum_probs=34.9
Q ss_pred CccccceeecCCCcceEEEEeC-CCCEEEEEEecCCCC-----CChHHHHHHHhh
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGSG-----QGLPEFQTAIIV 153 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~~-----~~~~~f~~e~~~ 153 (154)
+|...++||+|+||.||++.-. .+..+++|.+..... .....+.+|+.+
T Consensus 3 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~ 57 (266)
T cd06651 3 NWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQL 57 (266)
T ss_pred CccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHH
Confidence 5677789999999999999864 578999998853211 112346667654
No 111
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=95.94 E-value=0.0036 Score=38.77 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=13.9
Q ss_pred CCcceeEEEehhHHHHHHHHHHH
Q 043043 17 KKKHFMAVVGSVLACSVLICILE 39 (154)
Q Consensus 17 ~~~~~~~ii~~~v~~~vll~i~~ 39 (154)
+......|+++++++++++.+++
T Consensus 61 ~~ls~gaiagi~vg~~~~v~~lv 83 (96)
T PTZ00382 61 SGLSTGAIAGISVAVVAVVGGLV 83 (96)
T ss_pred CCcccccEEEEEeehhhHHHHHH
Confidence 44455677887777665554433
No 112
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=95.94 E-value=0.013 Score=41.10 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=17.8
Q ss_pred CCCCcceeEEEehhHHHHHHHHHHHHHHHH
Q 043043 15 GPKKKHFMAVVGSVLACSVLICILEIVLSF 44 (154)
Q Consensus 15 ~~~~~~~~~ii~~~v~~~vll~i~~~~~~~ 44 (154)
...+....+++|+++|++.++++|++..++
T Consensus 31 ~~~~d~~~I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 31 SRSKDYVKIMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred cccccceeeeeeeecchhhhHHHHHHHHHH
Confidence 344566677777777766655555444444
No 113
>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh
Probab=95.92 E-value=0.0073 Score=43.86 Aligned_cols=51 Identities=25% Similarity=0.397 Sum_probs=35.5
Q ss_pred hcCccccceeecCCCcceEEEEeC------CCCEEEEEEecCCC-CCChHHHHHHHhh
Q 043043 103 THNFDRKLVMGKGAFGNVYRGTLR------NSMKVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 103 t~~f~~~~~iG~g~~g~vy~g~l~------~g~~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
+++|...+.||+|+||.||+|... .+..+|+|.+.... .....+|.+|+.+
T Consensus 5 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~ 62 (277)
T cd05062 5 REKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASV 62 (277)
T ss_pred HHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHH
Confidence 445777788999999999998763 24579999985322 2223467777654
No 114
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=95.92 E-value=0.0063 Score=46.52 Aligned_cols=50 Identities=24% Similarity=0.210 Sum_probs=35.4
Q ss_pred cCccccceeecCCCcceEEEEeC-CCCEEEEEEecCC---CCCChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETG---SGQGLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~---~~~~~~~f~~e~~~ 153 (154)
.+|...+.||+|+||.||++.-. ++..+|+|.+... .......|..|+.+
T Consensus 43 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i 96 (370)
T cd05596 43 EDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDI 96 (370)
T ss_pred HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHH
Confidence 45666678999999999999874 5788999998521 22223446666654
No 115
>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi
Probab=95.91 E-value=0.016 Score=42.64 Aligned_cols=49 Identities=24% Similarity=0.308 Sum_probs=35.4
Q ss_pred CccccceeecCCCcceEEEEe-CCCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 105 NFDRKLVMGKGAFGNVYRGTL-RNSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
+|...+.||+|+||.||++.- .++..+++|.+..........|.+|+.+
T Consensus 20 ~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~ 69 (293)
T cd06647 20 KYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILV 69 (293)
T ss_pred hceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHH
Confidence 455557799999999999985 4568899999864333334567777654
No 116
>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom
Probab=95.90 E-value=0.014 Score=40.55 Aligned_cols=32 Identities=22% Similarity=0.115 Sum_probs=27.7
Q ss_pred ccccceeecCCCcceEEEEeCCCCEEEEEEec
Q 043043 106 FDRKLVMGKGAFGNVYRGTLRNSMKVAVKRGE 137 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~~g~~vaVK~l~ 137 (154)
+...+.||+|+||.||++..++|..||||...
T Consensus 17 ~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~ 48 (198)
T cd05144 17 ESLGNQIGVGKESDVYLALDPDGNPVALKFHR 48 (198)
T ss_pred hhcCCccccCcceEEEEEEcCCCCEEEEEEEe
Confidence 34457799999999999999889999999874
No 117
>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4. Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates
Probab=95.90 E-value=0.0067 Score=44.26 Aligned_cols=47 Identities=23% Similarity=0.261 Sum_probs=33.6
Q ss_pred cccceeecCCCcceEEEEeC-CCCEEEEEEecCCC-CCChHHHHHHHhh
Q 043043 107 DRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 107 ~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
.....||+|+||.||++... ++..+|+|.+.... ......|..|+.+
T Consensus 7 ~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~ 55 (288)
T cd06616 7 KDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDV 55 (288)
T ss_pred HHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHH
Confidence 33467999999999998874 57899999986432 2234567777654
No 118
>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2. Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst
Probab=95.88 E-value=0.011 Score=44.46 Aligned_cols=51 Identities=20% Similarity=0.160 Sum_probs=36.6
Q ss_pred cCccccceeecCCCcceEEEEeC-CCCEEEEEEecCCCC-CChHHHHHHHhhC
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGSG-QGLPEFQTAIIVL 154 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~~-~~~~~f~~e~~~l 154 (154)
++|.....||+|+||.||++... ++..+|+|.+..... .....|.+|+++|
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l 57 (331)
T cd06649 5 DDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVL 57 (331)
T ss_pred ccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHH
Confidence 34566678999999999999875 567899998864321 2235688887653
No 119
>PLN00009 cyclin-dependent kinase A; Provisional
Probab=95.88 E-value=0.016 Score=42.48 Aligned_cols=49 Identities=18% Similarity=0.315 Sum_probs=35.3
Q ss_pred CccccceeecCCCcceEEEEeC-CCCEEEEEEecCCC--CCChHHHHHHHhh
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGS--GQGLPEFQTAIIV 153 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~--~~~~~~f~~e~~~ 153 (154)
+|.....||+|.+|.||+|... ++..+++|.+.... ......|.+|+++
T Consensus 3 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~ 54 (294)
T PLN00009 3 QYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISL 54 (294)
T ss_pred ceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHH
Confidence 4555678999999999999875 67899999985322 2223567777654
No 120
>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a
Probab=95.87 E-value=0.011 Score=42.16 Aligned_cols=48 Identities=27% Similarity=0.436 Sum_probs=36.3
Q ss_pred cCccccceeecCCCcceEEEEeCC-CCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLRN-SMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~~-g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
++|...+.||+|.+|.||++...+ +..+++|.+..... ..+|.+|+++
T Consensus 3 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~e~~~ 51 (256)
T cd06612 3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED--LQEIIKEISI 51 (256)
T ss_pred ccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH--HHHHHHHHHH
Confidence 345566779999999999999865 68899999854322 5678888764
No 121
>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12
Probab=95.87 E-value=0.015 Score=43.86 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=36.0
Q ss_pred hcCccccceeecCCCcceEEEEe-CCCCEEEEEEecCCC--CCChHHHHHHHhh
Q 043043 103 THNFDRKLVMGKGAFGNVYRGTL-RNSMKVAVKRGETGS--GQGLPEFQTAIIV 153 (154)
Q Consensus 103 t~~f~~~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~~--~~~~~~f~~e~~~ 153 (154)
..+|...+.||+|++|.||++.. .++..||+|.+.... ......+.+|+++
T Consensus 14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~ 67 (343)
T cd07880 14 PDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRL 67 (343)
T ss_pred ccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHH
Confidence 34577778899999999999985 468899999985321 1122356667654
No 122
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=95.86 E-value=0.0041 Score=31.24 Aligned_cols=7 Identities=29% Similarity=0.377 Sum_probs=2.6
Q ss_pred hhHHHHH
Q 043043 27 SVLACSV 33 (154)
Q Consensus 27 ~~v~~~v 33 (154)
+++++++
T Consensus 8 IIv~V~v 14 (38)
T PF02439_consen 8 IIVAVVV 14 (38)
T ss_pred HHHHHHH
Confidence 3333333
No 123
>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo
Probab=95.84 E-value=0.013 Score=43.15 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=33.4
Q ss_pred ceeecCCCcceEEEEe-CCCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 110 LVMGKGAFGNVYRGTL-RNSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 110 ~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
..||+|+||.||++.. .++..+++|.+..........|.+|+.+
T Consensus 26 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~ 70 (292)
T cd06657 26 IKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVI 70 (292)
T ss_pred HHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHH
Confidence 4589999999999988 4678999999864444344567777654
No 124
>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase. Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.
Probab=95.84 E-value=0.01 Score=43.42 Aligned_cols=46 Identities=30% Similarity=0.408 Sum_probs=34.0
Q ss_pred ccceeecCCCcceEEEEeC-CCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 108 RKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 108 ~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
....||.|+||.||++... ++..+++|.+.........+|..|+++
T Consensus 16 i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~ 62 (292)
T cd06644 16 IIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEI 62 (292)
T ss_pred hhheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHH
Confidence 3466999999999999875 478899999865443334567777653
No 125
>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]
Probab=95.84 E-value=0.0096 Score=49.33 Aligned_cols=49 Identities=22% Similarity=0.305 Sum_probs=39.6
Q ss_pred ccccceeecCCCcceEEEEeCCC-CEEEEEEecCCCCCChHHHHHHHhhC
Q 043043 106 FDRKLVMGKGAFGNVYRGTLRNS-MKVAVKRGETGSGQGLPEFQTAIIVL 154 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~~g-~~vaVK~l~~~~~~~~~~f~~e~~~l 154 (154)
..-+++|-+|+|+.||.+...++ ..+|+|++-..+....+...+|+++|
T Consensus 39 v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~M 88 (738)
T KOG1989|consen 39 VTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIM 88 (738)
T ss_pred EEEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHH
Confidence 34558899999999999999776 89999999554555567788898875
No 126
>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory
Probab=95.83 E-value=0.0092 Score=43.49 Aligned_cols=48 Identities=31% Similarity=0.418 Sum_probs=34.5
Q ss_pred ccccceeecCCCcceEEEEeC------CCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLR------NSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~------~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
+.....||+|+||.||++... ++..+++|.+.........+|.+|+++
T Consensus 7 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~ 60 (280)
T cd05092 7 IVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAEL 60 (280)
T ss_pred ceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHH
Confidence 444577999999999999742 345789998865444444678888764
No 127
>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou
Probab=95.81 E-value=0.013 Score=42.66 Aligned_cols=51 Identities=24% Similarity=0.342 Sum_probs=38.2
Q ss_pred hhcCccccceeecCCCcceEEEEeC-CCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 102 ATHNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 102 at~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
.+.+|...+.||+|.+|.||++..+ ++..+++|.+..... ....|..|+++
T Consensus 17 ~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~~~ 68 (286)
T cd06614 17 PRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-NKELIINEILI 68 (286)
T ss_pred ccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch-hHHHHHHHHHH
Confidence 4455666678999999999999986 578899999964332 44567777764
No 128
>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1. Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst
Probab=95.81 E-value=0.012 Score=44.25 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=35.8
Q ss_pred cCccccceeecCCCcceEEEEeC-CCCEEEEEEecCCCC-CChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGSG-QGLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~~-~~~~~f~~e~~~ 153 (154)
++|.....||+|+||.||++... ++..+|+|.+..... ....+|.+|+++
T Consensus 5 ~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~ 56 (333)
T cd06650 5 DDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQV 56 (333)
T ss_pred hhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHH
Confidence 34556678999999999999875 567889998854322 223467788765
No 129
>PF15102 TMEM154: TMEM154 protein family
Probab=95.80 E-value=0.025 Score=37.47 Aligned_cols=8 Identities=25% Similarity=0.210 Sum_probs=3.9
Q ss_pred ccHHHHHH
Q 043043 94 IPYVEIKF 101 (154)
Q Consensus 94 ~~~~~l~~ 101 (154)
+.+++|..
T Consensus 125 iEmeeldk 132 (146)
T PF15102_consen 125 IEMEELDK 132 (146)
T ss_pred hhHHHHHh
Confidence 44555543
No 130
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=95.80 E-value=0.0038 Score=50.96 Aligned_cols=45 Identities=40% Similarity=0.474 Sum_probs=34.9
Q ss_pred ceeecCCCcceEEEE-eCCCCEEEEEEecCCC-CCChHHHHHHHhhC
Q 043043 110 LVMGKGAFGNVYRGT-LRNSMKVAVKRGETGS-GQGLPEFQTAIIVL 154 (154)
Q Consensus 110 ~~iG~g~~g~vy~g~-l~~g~~vaVK~l~~~~-~~~~~~f~~e~~~l 154 (154)
..||+|+||.||+|+ -..|..||||..+... ....+.+.+|+++|
T Consensus 19 e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~Eieil 65 (732)
T KOG4250|consen 19 ERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEIL 65 (732)
T ss_pred hhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHH
Confidence 559999999999999 5678999999996543 33345677787764
No 131
>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found
Probab=95.80 E-value=0.011 Score=45.24 Aligned_cols=51 Identities=22% Similarity=0.199 Sum_probs=35.5
Q ss_pred hcCccccceeecCCCcceEEEEeC-CCCEEEEEEecCC---CCCChHHHHHHHhh
Q 043043 103 THNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETG---SGQGLPEFQTAIIV 153 (154)
Q Consensus 103 t~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~---~~~~~~~f~~e~~~ 153 (154)
..+|...+.||+|+||.||++... ++..+|+|.+... .......+.+|+++
T Consensus 42 ~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i 96 (370)
T cd05621 42 AEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDI 96 (370)
T ss_pred HHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHH
Confidence 355666778999999999999875 4678999998531 12223446666654
No 132
>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=95.79 E-value=0.016 Score=43.92 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=35.7
Q ss_pred cCccccceeecCCCcceEEEEeC-CCCEEEEEEecCC--CCCChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETG--SGQGLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~--~~~~~~~f~~e~~~ 153 (154)
.+|.....||+|+||.||++.-. .|..+|+|.+... .......+.+|+.+
T Consensus 21 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~ 73 (359)
T cd07876 21 KRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVL 73 (359)
T ss_pred hceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHH
Confidence 45666688999999999999763 5789999999532 22223456677654
No 133
>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor. Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta
Probab=95.79 E-value=0.0085 Score=43.86 Aligned_cols=50 Identities=30% Similarity=0.440 Sum_probs=33.3
Q ss_pred cCccccceeecCCCcceEEEEeC------CCCEEEEEEecCCCC-CChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLR------NSMKVAVKRGETGSG-QGLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~------~g~~vaVK~l~~~~~-~~~~~f~~e~~~ 153 (154)
.+|.....||+|+||.||+|... .+..||+|.+..... .....|.+|+.+
T Consensus 6 ~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~ 62 (288)
T cd05061 6 EKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASV 62 (288)
T ss_pred HHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 34555678999999999999753 245799998853322 122356666643
No 134
>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional
Probab=95.78 E-value=0.013 Score=44.38 Aligned_cols=48 Identities=27% Similarity=0.358 Sum_probs=33.4
Q ss_pred ccccceeecCCCcceEEEEeCC--CCEEEEEEecCC---CCCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLRN--SMKVAVKRGETG---SGQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~~--g~~vaVK~l~~~---~~~~~~~f~~e~~~ 153 (154)
|.....||+|+||.||++...+ +..||+|.+... .......+.+|+++
T Consensus 32 y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~ 84 (340)
T PTZ00426 32 FNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKI 84 (340)
T ss_pred cEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHH
Confidence 5556789999999999998643 357999998421 22233456777654
No 135
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.77 E-value=0.021 Score=48.78 Aligned_cols=49 Identities=24% Similarity=0.314 Sum_probs=36.1
Q ss_pred CccccceeecCCCcceEEEEeC-CCCEEEEEEecCCCCC---ChHHHHHHHhh
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGSGQ---GLPEFQTAIIV 153 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~~~---~~~~f~~e~~~ 153 (154)
+|...++||+|+||.||++.-. .+..||+|++...... ....|.+|+++
T Consensus 3 rYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~I 55 (932)
T PRK13184 3 RYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKI 55 (932)
T ss_pred CeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHH
Confidence 4556688999999999999864 5789999999532111 23468888765
No 136
>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun
Probab=95.75 E-value=0.017 Score=42.29 Aligned_cols=48 Identities=23% Similarity=0.279 Sum_probs=35.4
Q ss_pred ccccceeecCCCcceEEEEe-CCCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTL-RNSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
+...+.||+|.+|.||++.. .++..+++|.+..........+.+|+.+
T Consensus 21 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~ 69 (285)
T cd06648 21 LDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVI 69 (285)
T ss_pred hhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHH
Confidence 44457899999999999986 4678899999864444444567777653
No 137
>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]
Probab=95.75 E-value=0.017 Score=43.83 Aligned_cols=54 Identities=19% Similarity=0.165 Sum_probs=39.0
Q ss_pred ccHHHHHHhhcCccccceeecCCCcceEEEEeC-CCCEEEEEEecCC-CCCChHHHHHHHhhC
Q 043043 94 IPYVEIKFATHNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETG-SGQGLPEFQTAIIVL 154 (154)
Q Consensus 94 ~~~~~l~~at~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~-~~~~~~~f~~e~~~l 154 (154)
++..||+. .+.||+|..|+|||+.-. .+..+|.|.+... ...-.++..+|++++
T Consensus 76 i~~~dle~-------~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il 131 (364)
T KOG0581|consen 76 ISLSDLER-------LGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEIL 131 (364)
T ss_pred cCHHHhhh-------hhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHH
Confidence 44555554 367999999999999874 6788999999432 233356788888764
No 138
>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7. Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it
Probab=95.74 E-value=0.019 Score=42.13 Aligned_cols=47 Identities=17% Similarity=0.248 Sum_probs=33.1
Q ss_pred ccccceeecCCCcceEEEEeCC-CCEEEEEEecCCC-CCChHHHHHHHh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLRN-SMKVAVKRGETGS-GQGLPEFQTAII 152 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~~-g~~vaVK~l~~~~-~~~~~~f~~e~~ 152 (154)
|...+.||+|.+|.||++...+ +..+|||.+.... .....++..|++
T Consensus 17 ~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~ 65 (296)
T cd06618 17 LENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLD 65 (296)
T ss_pred heeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHH
Confidence 4455789999999999999875 7899999985322 222234555543
No 139
>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase. Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions
Probab=95.72 E-value=0.0096 Score=43.02 Aligned_cols=48 Identities=25% Similarity=0.426 Sum_probs=33.9
Q ss_pred ccccceeecCCCcceEEEEeCCC----CEEEEEEecCCC-CCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLRNS----MKVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~~g----~~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
+...+.||+|+||.||+|...+. ..+++|...... ......|.+|+.+
T Consensus 8 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~ 60 (270)
T cd05056 8 ITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYI 60 (270)
T ss_pred ceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHH
Confidence 45567899999999999987432 468899885433 2234568888754
No 140
>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul
Probab=95.72 E-value=0.012 Score=42.54 Aligned_cols=49 Identities=27% Similarity=0.467 Sum_probs=33.7
Q ss_pred CccccceeecCCCcceEEEEeC----CCCEEEEEEecCCC-CCChHHHHHHHhh
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLR----NSMKVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~----~g~~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
+|...+.||+|.||.||+|... ....+|+|.+.... ......|..|+.+
T Consensus 5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~ 58 (267)
T cd05066 5 CIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASI 58 (267)
T ss_pred HeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3555688999999999999863 22378999985322 2223567777754
No 141
>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i
Probab=95.71 E-value=0.016 Score=42.71 Aligned_cols=44 Identities=20% Similarity=0.264 Sum_probs=33.5
Q ss_pred ceeecCCCcceEEEEeC-CCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 110 LVMGKGAFGNVYRGTLR-NSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 110 ~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
..||.|+||.||++... ++..+++|.+..........+.+|+.+
T Consensus 27 ~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~ 71 (297)
T cd06659 27 IKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVI 71 (297)
T ss_pred hhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHH
Confidence 46999999999999864 678999999965444445567777654
No 142
>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated
Probab=95.71 E-value=0.0099 Score=42.81 Aligned_cols=48 Identities=25% Similarity=0.441 Sum_probs=33.6
Q ss_pred ccccceeecCCCcceEEEEe-CCCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTL-RNSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
|.....||+|+||.||++.. .++..+|+|.+..........+.+|+.+
T Consensus 11 ~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~ 59 (267)
T cd06645 11 FELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIM 59 (267)
T ss_pred HHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHH
Confidence 33346699999999999986 4578899999864433333456666643
No 143
>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins. Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily
Probab=95.70 E-value=0.025 Score=41.80 Aligned_cols=50 Identities=22% Similarity=0.278 Sum_probs=35.8
Q ss_pred cCccccceeecCCCcceEEEEeC-CCCEEEEEEecCCCCC---ChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGSGQ---GLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~~~---~~~~f~~e~~~ 153 (154)
..|...+.||+|.||.||++... ++..|++|.+...... ...++.+|+++
T Consensus 15 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~ 68 (307)
T cd06607 15 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRF 68 (307)
T ss_pred hhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHH
Confidence 34666688999999999999874 5789999988533222 22457777754
No 144
>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,
Probab=95.69 E-value=0.0091 Score=43.67 Aligned_cols=50 Identities=22% Similarity=0.352 Sum_probs=34.3
Q ss_pred cCccccceeecCCCcceEEEEeCC------CCEEEEEEecCC-CCCChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLRN------SMKVAVKRGETG-SGQGLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~~------g~~vaVK~l~~~-~~~~~~~f~~e~~~ 153 (154)
.+|...+.||+|+||.||++...+ ...+|+|.+... ......++.+|+++
T Consensus 12 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~ 68 (293)
T cd05053 12 DRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEM 68 (293)
T ss_pred hHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHH
Confidence 345566789999999999998742 357899998543 22223457777754
No 145
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=95.65 E-value=0.0047 Score=45.31 Aligned_cols=45 Identities=22% Similarity=0.190 Sum_probs=33.9
Q ss_pred cceeecCCCcceEEEEe-CCCCEEEEEEecCCC-CCChHHHHHHHhh
Q 043043 109 KLVMGKGAFGNVYRGTL-RNSMKVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 109 ~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
...||.|.||+|+|-.. +.|...|||++.... ...+.+|..|.+.
T Consensus 69 lg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~ 115 (361)
T KOG1006|consen 69 LGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDT 115 (361)
T ss_pred HHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHH
Confidence 35599999999999766 578999999996543 3445677777653
No 146
>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl
Probab=95.65 E-value=0.027 Score=41.47 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=33.7
Q ss_pred ccccceeecCCCcceEEEEeC-CCCEEEEEEecCC-CCCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETG-SGQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~-~~~~~~~f~~e~~~ 153 (154)
|.....||+|+||.||++... ++..||+|.+... .......+.+|+.+
T Consensus 8 y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~ 57 (301)
T cd07873 8 YIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSL 57 (301)
T ss_pred eEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHH
Confidence 445577999999999999875 5688999998533 22223456666654
No 147
>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an
Probab=95.65 E-value=0.012 Score=45.13 Aligned_cols=57 Identities=18% Similarity=0.205 Sum_probs=38.7
Q ss_pred HHHHHhhcCccccceeecCCCcceEEEEeC-CCCEEEEEEecCC---CCCChHHHHHHHhh
Q 043043 97 VEIKFATHNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETG---SGQGLPEFQTAIIV 153 (154)
Q Consensus 97 ~~l~~at~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~---~~~~~~~f~~e~~~ 153 (154)
.++....++|.....||+|+||.||++... ++..+|+|.+... .......|.+|+.+
T Consensus 36 ~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i 96 (371)
T cd05622 36 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDI 96 (371)
T ss_pred hhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHH
Confidence 344444567777889999999999999875 4678999998421 12223345566543
No 148
>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto
Probab=95.62 E-value=0.0078 Score=45.40 Aligned_cols=49 Identities=24% Similarity=0.355 Sum_probs=32.6
Q ss_pred CccccceeecCCCcceEEEEeC------CCCEEEEEEecCCCCC-ChHHHHHHHhh
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLR------NSMKVAVKRGETGSGQ-GLPEFQTAIIV 153 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~------~g~~vaVK~l~~~~~~-~~~~f~~e~~~ 153 (154)
+|...++||+|+||.||++... .+..||+|++...... ....+..|+.+
T Consensus 8 ~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~ 63 (337)
T cd05054 8 RLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKI 63 (337)
T ss_pred HhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHH
Confidence 3455578999999999998642 2468999998643221 22346666654
No 149
>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include
Probab=95.61 E-value=0.014 Score=42.60 Aligned_cols=45 Identities=16% Similarity=0.098 Sum_probs=33.1
Q ss_pred cceeecCCCcceEEEEeC-CCCEEEEEEecCCC-CCChHHHHHHHhh
Q 043043 109 KLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 109 ~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
.+.||+|.||+||++... ++..+|+|.+.... ......|.+|+++
T Consensus 10 ~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~ 56 (284)
T cd06620 10 ISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQI 56 (284)
T ss_pred HHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHH
Confidence 366999999999998864 57889999885432 2234578888764
No 150
>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=95.60 E-value=0.024 Score=43.03 Aligned_cols=50 Identities=16% Similarity=0.153 Sum_probs=35.4
Q ss_pred cCccccceeecCCCcceEEEEeC-CCCEEEEEEecCC--CCCChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETG--SGQGLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~--~~~~~~~f~~e~~~ 153 (154)
.+|...+.||+|+||.||++.-. .+..+|||.+... .......+.+|+.+
T Consensus 24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~ 76 (364)
T cd07875 24 KRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVL 76 (364)
T ss_pred cceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHH
Confidence 45666788999999999999853 5678999999532 22223456666654
No 151
>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1. Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron
Probab=95.59 E-value=0.018 Score=42.80 Aligned_cols=48 Identities=23% Similarity=0.308 Sum_probs=34.5
Q ss_pred ccccceeecCCCcceEEEEeC-CCCEEEEEEecCCCCC---ChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGSGQ---GLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~~~---~~~~f~~e~~~ 153 (154)
|...+.||+|+||.||++... ++..+++|.+...... ...++..|+++
T Consensus 27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~ 78 (317)
T cd06635 27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKF 78 (317)
T ss_pred hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHH
Confidence 556678999999999999874 5788999998532221 22457777654
No 152
>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]
Probab=95.58 E-value=0.015 Score=46.09 Aligned_cols=34 Identities=32% Similarity=0.420 Sum_probs=28.9
Q ss_pred cCccccceeecCCCcceEEEEeC-CCCEEEEEEec
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGE 137 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~ 137 (154)
+.|....+||+|+||+||.++-+ .|..+|.|+|.
T Consensus 141 ~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~Lk 175 (550)
T KOG0605|consen 141 DDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILK 175 (550)
T ss_pred ccchhheeeccccceeEEEEEEccCCcEEeeeccc
Confidence 55667788999999999999875 47899999994
No 153
>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I
Probab=95.52 E-value=0.019 Score=41.30 Aligned_cols=51 Identities=24% Similarity=0.350 Sum_probs=38.0
Q ss_pred hhcCccccceeecCCCcceEEEEeC-CCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 102 ATHNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 102 at~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
++++|.....||.|.+|.||++... ++..+++|.+..... ...+|.+|+++
T Consensus 4 ~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~e~~~ 55 (275)
T cd06608 4 PTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIED-EEEEIKEEYNI 55 (275)
T ss_pred chhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCch-hHHHHHHHHHH
Confidence 4566777788999999999999985 567899999864322 33567777754
No 154
>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins. Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic
Probab=95.52 E-value=0.028 Score=41.27 Aligned_cols=50 Identities=20% Similarity=0.245 Sum_probs=35.1
Q ss_pred cCccccceeecCCCcceEEEEeC-CCCEEEEEEecCCCCC--ChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGSGQ--GLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~~~--~~~~f~~e~~~ 153 (154)
.+|.....||+|++|.||++... ++..+++|.+...... ....+.+|+++
T Consensus 8 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~ 60 (311)
T cd07866 8 RDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKI 60 (311)
T ss_pred ccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHH
Confidence 45666788999999999999874 5788999998533221 22345566553
No 155
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=95.52 E-value=0.016 Score=40.29 Aligned_cols=28 Identities=32% Similarity=0.563 Sum_probs=23.6
Q ss_pred ceeecCCCcceEEEEeC-CCCEEEEEEec
Q 043043 110 LVMGKGAFGNVYRGTLR-NSMKVAVKRGE 137 (154)
Q Consensus 110 ~~iG~g~~g~vy~g~l~-~g~~vaVK~l~ 137 (154)
+.||+|.||+||++.-. .+..||.|+..
T Consensus 8 ekigegtygtvfkarn~~t~eivalkrvr 36 (292)
T KOG0662|consen 8 EKIGEGTYGTVFKARNRETHEIVALKRVR 36 (292)
T ss_pred HhhcCCcceeeEecccCCccceEEEEEEe
Confidence 56999999999999864 46789999884
No 156
>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2. Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A
Probab=95.49 E-value=0.019 Score=42.49 Aligned_cols=49 Identities=22% Similarity=0.459 Sum_probs=33.3
Q ss_pred CccccceeecCCCcceEEEEeC-CCC--EEEEEEecCCC-CCChHHHHHHHhh
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLR-NSM--KVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~-~g~--~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
+|...+.||+|+||.||++... ++. .+++|.+.... .....+|.+|+++
T Consensus 8 ~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~ 60 (303)
T cd05088 8 DIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEV 60 (303)
T ss_pred hceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHH
Confidence 4555678999999999999874 343 46787775332 2233567778764
No 157
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=95.47 E-value=0.0044 Score=53.48 Aligned_cols=50 Identities=18% Similarity=0.353 Sum_probs=34.8
Q ss_pred cCccccceeecCCCcceEEEEeC-CCCEEEEEEecCCC-CCChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
..|.+-.+||+|+||.||+.+=. ||+..|||++.... ...-....+|+.+
T Consensus 479 ~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~ 530 (1351)
T KOG1035|consen 479 NDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKL 530 (1351)
T ss_pred hhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHH
Confidence 44666678999999999998743 78999999995432 2222334556654
No 158
>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign
Probab=95.44 E-value=0.026 Score=41.07 Aligned_cols=47 Identities=26% Similarity=0.302 Sum_probs=33.4
Q ss_pred cccceeecCCCcceEEEEe-----CCCCEEEEEEecCCC-CCChHHHHHHHhh
Q 043043 107 DRKLVMGKGAFGNVYRGTL-----RNSMKVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 107 ~~~~~iG~g~~g~vy~g~l-----~~g~~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
.....||+|+||.||.+.. .++..||+|.+.... ......|.+|+++
T Consensus 7 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~ 59 (283)
T cd05080 7 KKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINI 59 (283)
T ss_pred eeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHH
Confidence 4457799999999987654 356789999986432 2234567788764
No 159
>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []. These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.
Probab=95.41 E-value=0.0052 Score=39.57 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=27.0
Q ss_pred ceeecCCCcceEEEEeCCCCEEEEEEecCC
Q 043043 110 LVMGKGAFGNVYRGTLRNSMKVAVKRGETG 139 (154)
Q Consensus 110 ~~iG~g~~g~vy~g~l~~g~~vaVK~l~~~ 139 (154)
+-|+.++.|.||+|++++|..||||...+.
T Consensus 17 ~PlasASiaQVh~a~l~~g~~VaVKV~rP~ 46 (119)
T PF03109_consen 17 EPLASASIAQVHRARLKDGEEVAVKVQRPG 46 (119)
T ss_pred chhhheehhhheeeeecccchhhhhhcchH
Confidence 559999999999999999999999998643
No 160
>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer
Probab=95.39 E-value=0.016 Score=42.14 Aligned_cols=48 Identities=29% Similarity=0.443 Sum_probs=32.7
Q ss_pred ccccceeecCCCcceEEEEeCCC------CEEEEEEecCCC-CCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLRNS------MKVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~~g------~~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
|.....||+|+||.||+|..... ..+++|.+.... .....+|.+|+.+
T Consensus 7 ~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~ 61 (283)
T cd05048 7 VRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAEL 61 (283)
T ss_pred cchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHH
Confidence 34446799999999999987432 468999985332 2223467777754
No 161
>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ
Probab=95.38 E-value=0.033 Score=39.83 Aligned_cols=50 Identities=22% Similarity=0.377 Sum_probs=36.9
Q ss_pred cCccccceeecCCCcceEEEEeC-CCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
.+|.....||.|.+|.||++... ++..+++|.+..........+.+|+++
T Consensus 3 ~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~ 53 (262)
T cd06613 3 EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISM 53 (262)
T ss_pred cceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHH
Confidence 34555678999999999999874 467899999865444345667777654
No 162
>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea
Probab=95.37 E-value=0.022 Score=41.35 Aligned_cols=58 Identities=22% Similarity=0.330 Sum_probs=41.4
Q ss_pred ccHHHHHHhhcCccccceeecCCCcceEEEEeC-CCCEEEEEEecCCCCCChHHHHHHHh
Q 043043 94 IPYVEIKFATHNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGSGQGLPEFQTAII 152 (154)
Q Consensus 94 ~~~~~l~~at~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~~~~~~~f~~e~~ 152 (154)
.++.++..+...|.....||.|+||.||++... ++..+|+|.+.... ....++..|+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~-~~~~~~~~e~~ 64 (282)
T cd06636 6 IDLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE-DEEEEIKLEIN 64 (282)
T ss_pred hhhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecCh-HHHHHHHHHHH
Confidence 455666667777877789999999999999874 56889999885332 22345555554
No 163
>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1. Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the
Probab=95.36 E-value=0.025 Score=41.40 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=33.9
Q ss_pred CccccceeecCCCcceEEEEeC-CCCEEEEEEecCCC--CCChHHHHHHHhh
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGS--GQGLPEFQTAIIV 153 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~--~~~~~~f~~e~~~ 153 (154)
+|...+.||.|.+|.||++..+ ++..+++|.+.... ......+.+|+++
T Consensus 6 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~ 57 (293)
T cd07843 6 EYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINI 57 (293)
T ss_pred hhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHH
Confidence 3455577999999999999986 57889999995322 1122345566643
No 164
>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl
Probab=95.36 E-value=0.038 Score=40.56 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=33.9
Q ss_pred CccccceeecCCCcceEEEEeC-CCCEEEEEEecCCC--CCChHHHHHHHhh
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGS--GQGLPEFQTAIIV 153 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~--~~~~~~f~~e~~~ 153 (154)
+|.....||+|+||.||++... ++..+|+|.+.... ......+.+|+.+
T Consensus 13 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~ 64 (310)
T cd07865 13 KYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKI 64 (310)
T ss_pred heEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHH
Confidence 4666688999999999999874 57899999985322 2222334556543
No 165
>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho
Probab=95.35 E-value=0.028 Score=40.44 Aligned_cols=49 Identities=27% Similarity=0.394 Sum_probs=34.6
Q ss_pred CccccceeecCCCcceEEEEeC-CCCEEEEEEecCC--C---CCChHHHHHHHhh
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETG--S---GQGLPEFQTAIIV 153 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~--~---~~~~~~f~~e~~~ 153 (154)
+|...+.||+|++|.||++... ++..+++|.+... . ......|.+|+++
T Consensus 3 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~ 57 (264)
T cd06653 3 NWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQL 57 (264)
T ss_pred ceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHH
Confidence 4566688999999999999864 5789999987422 1 1122467777754
No 166
>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors. Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke
Probab=95.35 E-value=0.019 Score=41.94 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=33.7
Q ss_pred CccccceeecCCCcceEEEEeCC-----------------CCEEEEEEecCCC-CCChHHHHHHHhh
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLRN-----------------SMKVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~~-----------------g~~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
.|.....||+|+||.||++...+ +..+|+|.+.... .....+|.+|+++
T Consensus 6 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~ 72 (296)
T cd05051 6 PLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKI 72 (296)
T ss_pred hCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHH
Confidence 34555779999999999987642 2458999985332 2234567777754
No 167
>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5. Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the
Probab=95.33 E-value=0.04 Score=41.28 Aligned_cols=50 Identities=18% Similarity=0.191 Sum_probs=35.7
Q ss_pred cCccccceeecCCCcceEEEEeC-CCCEEEEEEecCC--CCCChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETG--SGQGLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~--~~~~~~~f~~e~~~ 153 (154)
.+|...+.||.|++|.||++... +|..+++|++... .......+..|+.+
T Consensus 5 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~ 57 (334)
T cd07855 5 SRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKI 57 (334)
T ss_pred hceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHH
Confidence 45666678999999999999864 5789999998532 22233456666654
No 168
>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly
Probab=95.33 E-value=0.018 Score=41.92 Aligned_cols=44 Identities=27% Similarity=0.427 Sum_probs=30.8
Q ss_pred ceeecCCCcceEEEEeCC------CCEEEEEEecCCCCC-ChHHHHHHHhh
Q 043043 110 LVMGKGAFGNVYRGTLRN------SMKVAVKRGETGSGQ-GLPEFQTAIIV 153 (154)
Q Consensus 110 ~~iG~g~~g~vy~g~l~~------g~~vaVK~l~~~~~~-~~~~f~~e~~~ 153 (154)
+.||+|+||.||+|...+ +..||+|++...... ....|..|+.+
T Consensus 11 ~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~ 61 (283)
T cd05091 11 EELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMM 61 (283)
T ss_pred HHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 569999999999998632 467999999643222 23457777654
No 169
>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481
Probab=95.32 E-value=0.034 Score=46.10 Aligned_cols=49 Identities=29% Similarity=0.302 Sum_probs=34.4
Q ss_pred CccccceeecCCCcceEEEEeC-CCCEEEEEEecCCCCCC---hHHHHHHHhh
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGSGQG---LPEFQTAIIV 153 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~~~~---~~~f~~e~~~ 153 (154)
+|.....||+|.||.||++... .+..||+|.+....... ...+..|+.+
T Consensus 5 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~ 57 (669)
T cd05610 5 EFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDA 57 (669)
T ss_pred CEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHH
Confidence 4555678999999999999885 57899999985332111 2456666543
No 170
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=95.28 E-value=0.076 Score=37.29 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=12.7
Q ss_pred eeEEEehhHHHHHHHHHHHHHHHHH
Q 043043 21 FMAVVGSVLACSVLICILEIVLSFV 45 (154)
Q Consensus 21 ~~~ii~~~v~~~vll~i~~~~~~~~ 45 (154)
..++|++++.+.++++++++...|+
T Consensus 99 ~~~lI~lv~~g~~lLla~~~~~~Y~ 123 (202)
T PF06365_consen 99 YPTLIALVTSGSFLLLAILLGAGYC 123 (202)
T ss_pred ceEEEehHHhhHHHHHHHHHHHHHH
Confidence 4467776655544444444444333
No 171
>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological
Probab=95.28 E-value=0.018 Score=41.62 Aligned_cols=49 Identities=27% Similarity=0.396 Sum_probs=34.1
Q ss_pred CccccceeecCCCcceEEEEeCC------CCEEEEEEecCCC-CCChHHHHHHHhh
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLRN------SMKVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~~------g~~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
+|...+.||+|+||.||++...+ +..+|+|.+.... .....+|.+|+.+
T Consensus 7 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~ 62 (277)
T cd05032 7 KITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASV 62 (277)
T ss_pred HeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHH
Confidence 45556789999999999998742 3579999985432 2223467777654
No 172
>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1. Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.
Probab=95.27 E-value=0.024 Score=41.72 Aligned_cols=49 Identities=22% Similarity=0.398 Sum_probs=33.3
Q ss_pred CccccceeecCCCcceEEEEeCC-CC--EEEEEEecCCC-CCChHHHHHHHhh
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLRN-SM--KVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~~-g~--~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
+|.-..+||+|+||.||++...+ +. .+++|.+.... ......|.+|+++
T Consensus 3 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~ 55 (297)
T cd05089 3 DIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEV 55 (297)
T ss_pred cceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHH
Confidence 35556789999999999998853 32 47888875322 2223567777754
No 173
>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1. Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25
Probab=95.27 E-value=0.014 Score=42.39 Aligned_cols=46 Identities=30% Similarity=0.466 Sum_probs=32.7
Q ss_pred ccceeecCCCcceEEEEeC-CCCEEEEEEecCCC-CCChHHHHHHHhh
Q 043043 108 RKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 108 ~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
..+.||+|.||.||+|... ++..||+|.+.... ......|.+|+++
T Consensus 8 ~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~ 55 (277)
T cd06642 8 KLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITV 55 (277)
T ss_pred HHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHH
Confidence 3456999999999999874 46789999885332 2223467777754
No 174
>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit
Probab=95.25 E-value=0.017 Score=42.43 Aligned_cols=49 Identities=24% Similarity=0.301 Sum_probs=33.7
Q ss_pred CccccceeecCCCcceEEEEeC-----------------CCCEEEEEEecCCC-CCChHHHHHHHhh
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLR-----------------NSMKVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~-----------------~g~~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
+|.-.+.||+|+||.||++... ++..+|+|.+.... .....+|.+|+.+
T Consensus 6 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~ 72 (296)
T cd05095 6 RLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKI 72 (296)
T ss_pred hceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHH
Confidence 4555678999999999987532 23468999986432 2234578888764
No 175
>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase. Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.
Probab=95.24 E-value=0.021 Score=41.53 Aligned_cols=44 Identities=30% Similarity=0.465 Sum_probs=32.4
Q ss_pred ceeecCCCcceEEEEeCC-CCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 110 LVMGKGAFGNVYRGTLRN-SMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 110 ~~iG~g~~g~vy~g~l~~-g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
..||+|+||.||++.... +..+++|.+..........|.+|+++
T Consensus 11 ~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~ 55 (282)
T cd06643 11 GELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDI 55 (282)
T ss_pred hhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHH
Confidence 559999999999999864 56788988854433334567777754
No 176
>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok
Probab=95.24 E-value=0.029 Score=42.40 Aligned_cols=50 Identities=16% Similarity=0.130 Sum_probs=35.0
Q ss_pred cCccccceeecCCCcceEEEEeC-CCCEEEEEEecCCC--CCChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGS--GQGLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~--~~~~~~f~~e~~~ 153 (154)
.+|...+.||+|+||.||++.-. .+..+|+|.+.... ......+.+|+.+
T Consensus 17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~ 69 (355)
T cd07874 17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVL 69 (355)
T ss_pred hceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHH
Confidence 45666788999999999998753 46789999995422 2223456666654
No 177
>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=95.21 E-value=0.027 Score=43.53 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=35.6
Q ss_pred ccceeecCCCcceEEEEeCC-CCEEEEEEecCCC---CCChHHHHHHHhhC
Q 043043 108 RKLVMGKGAFGNVYRGTLRN-SMKVAVKRGETGS---GQGLPEFQTAIIVL 154 (154)
Q Consensus 108 ~~~~iG~g~~g~vy~g~l~~-g~~vaVK~l~~~~---~~~~~~f~~e~~~l 154 (154)
....||+|.||.||+++-+. |..+|+|.+.... ..+.....+|+.+|
T Consensus 39 l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il 89 (382)
T KOG0032|consen 39 LGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAIL 89 (382)
T ss_pred ehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHH
Confidence 33679999999999999875 8899999995332 22345788888764
No 178
>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t
Probab=95.20 E-value=0.049 Score=38.97 Aligned_cols=50 Identities=26% Similarity=0.395 Sum_probs=35.6
Q ss_pred cCccccceeecCCCcceEEEEeC-CCCEEEEEEecCCCC-----CChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGSG-----QGLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~~-----~~~~~f~~e~~~ 153 (154)
++|...+.||+|++|.||++... ++..+++|.+..... .....+.+|+++
T Consensus 2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~ 57 (263)
T cd06625 2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQL 57 (263)
T ss_pred CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHH
Confidence 35777789999999999999864 578999998853211 122456667654
No 179
>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re
Probab=95.18 E-value=0.039 Score=39.49 Aligned_cols=45 Identities=33% Similarity=0.420 Sum_probs=33.5
Q ss_pred ccccceeecCCCcceEEEEeCCCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLRNSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
|...+.||+|+||.||++..+ |..+++|.+... .....|..|+.+
T Consensus 8 ~~~~~~lg~g~~~~v~~~~~~-~~~~~~k~~~~~--~~~~~~~~e~~~ 52 (256)
T cd05082 8 LKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKND--ATAQAFLAEASV 52 (256)
T ss_pred CeeeeeecccCCCeEEEEEEc-CCcEEEEEeCCC--chHHHHHHHHHH
Confidence 455578999999999999875 678999988532 224567777754
No 180
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=95.16 E-value=0.044 Score=44.83 Aligned_cols=36 Identities=31% Similarity=0.520 Sum_probs=29.4
Q ss_pred cCccccceeecCCCcceEEEEeC-CCCEEEEEEecCC
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETG 139 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~ 139 (154)
.+|....+||+|.||.|+.+.+. ++...|||.|...
T Consensus 368 ~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~ 404 (694)
T KOG0694|consen 368 DDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKG 404 (694)
T ss_pred cceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeecc
Confidence 45666678999999999999995 4678999999543
No 181
>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea
Probab=95.13 E-value=0.024 Score=41.15 Aligned_cols=48 Identities=29% Similarity=0.476 Sum_probs=33.1
Q ss_pred ccccceeecCCCcceEEEEeCC-C----CEEEEEEecCCCC-CChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLRN-S----MKVAVKRGETGSG-QGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~~-g----~~vaVK~l~~~~~-~~~~~f~~e~~~ 153 (154)
|...+.||+|+||.||+|...+ | ..+|+|.+..... ....+|.+|+++
T Consensus 9 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~ 62 (279)
T cd05057 9 LEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYV 62 (279)
T ss_pred cEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHH
Confidence 4445789999999999998742 2 2589998854322 223567777754
No 182
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=95.12 E-value=0.018 Score=46.74 Aligned_cols=48 Identities=29% Similarity=0.401 Sum_probs=34.8
Q ss_pred ccccceeecCCCcceEEEEe-CCCCEEEEEEecCCCCCC---hHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTL-RNSMKVAVKRGETGSGQG---LPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~~~~~---~~~f~~e~~~ 153 (154)
|.+-+-||.|.||.||.+.- .+...||||+......++ +.+.+.|+..
T Consensus 28 f~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrF 79 (948)
T KOG0577|consen 28 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRF 79 (948)
T ss_pred HHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHH
Confidence 55666799999999998875 456789999997544443 3455666654
No 183
>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1. Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a
Probab=95.08 E-value=0.028 Score=40.97 Aligned_cols=48 Identities=27% Similarity=0.404 Sum_probs=34.1
Q ss_pred ccccceeecCCCcceEEEEe-----CCCCEEEEEEecCCC-CCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTL-----RNSMKVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l-----~~g~~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
|.....||+|+||.||.+.+ .++..+|+|.+.... ......|.+|+++
T Consensus 6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~ 59 (284)
T cd05079 6 LKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEI 59 (284)
T ss_pred hhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHH
Confidence 44557799999999999975 246789999986442 2223567777754
No 184
>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul
Probab=95.07 E-value=0.024 Score=42.51 Aligned_cols=49 Identities=22% Similarity=0.319 Sum_probs=33.7
Q ss_pred CccccceeecCCCcceEEEEeC-CCCEEEEEEecCC--CCCChHHHHHHHhh
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETG--SGQGLPEFQTAIIV 153 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~--~~~~~~~f~~e~~~ 153 (154)
+|...+.||+|+||.||+|... ++..+++|++... .......+..|+.+
T Consensus 8 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~ 59 (337)
T cd07852 8 KYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMF 59 (337)
T ss_pred HHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHH
Confidence 3555577999999999999875 5788999988421 22223445566643
No 185
>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept
Probab=95.05 E-value=0.023 Score=42.06 Aligned_cols=50 Identities=28% Similarity=0.345 Sum_probs=34.5
Q ss_pred cCccccceeecCCCcceEEEEeC------CCCEEEEEEecCCCC-CChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLR------NSMKVAVKRGETGSG-QGLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~------~g~~vaVK~l~~~~~-~~~~~f~~e~~~ 153 (154)
++|...+.||+|+||.||++..- .+..+|+|.+..... .....|.+|+++
T Consensus 35 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~ 91 (302)
T cd05055 35 NNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKI 91 (302)
T ss_pred HHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHH
Confidence 34666788999999999998741 235799999864322 223457777764
No 186
>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]
Probab=95.04 E-value=0.023 Score=46.59 Aligned_cols=51 Identities=29% Similarity=0.382 Sum_probs=36.8
Q ss_pred cCccccceeecCCCcceEEEEeC----C----CCEEEEEEecCC-CCCChHHHHHHHhhC
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLR----N----SMKVAVKRGETG-SGQGLPEFQTAIIVL 154 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~----~----g~~vaVK~l~~~-~~~~~~~f~~e~~~l 154 (154)
+++.-.+.||+|.||.|++|.+. . ...||||++... .......+..|+++|
T Consensus 296 ~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m 355 (609)
T KOG0200|consen 296 ENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVL 355 (609)
T ss_pred hhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHH
Confidence 34444458999999999999873 1 457999999643 334456788888764
No 187
>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4. Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin
Probab=95.01 E-value=0.028 Score=41.51 Aligned_cols=49 Identities=33% Similarity=0.553 Sum_probs=32.4
Q ss_pred CccccceeecCCCcceEEEEeC-CCC----EEEEEEecCCCC-CChHHHHHHHhh
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLR-NSM----KVAVKRGETGSG-QGLPEFQTAIIV 153 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~-~g~----~vaVK~l~~~~~-~~~~~f~~e~~~ 153 (154)
.|...+.||+|+||.||++... ++. .+|+|.+..... ....+|.+|+.+
T Consensus 8 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~ 62 (303)
T cd05110 8 ELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALI 62 (303)
T ss_pred hceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHH
Confidence 3555678999999999999863 333 578888853322 222356677653
No 188
>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including
Probab=94.98 E-value=0.018 Score=42.22 Aligned_cols=49 Identities=24% Similarity=0.306 Sum_probs=33.0
Q ss_pred ccccceeecCCCcceEEEEeCC---------------CCEEEEEEecCCC-CCChHHHHHHHhhC
Q 043043 106 FDRKLVMGKGAFGNVYRGTLRN---------------SMKVAVKRGETGS-GQGLPEFQTAIIVL 154 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~~---------------g~~vaVK~l~~~~-~~~~~~f~~e~~~l 154 (154)
|.-.+.||+|+||.||++...+ ...||+|.+.... .....+|.+|+++|
T Consensus 7 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l 71 (295)
T cd05097 7 LRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIM 71 (295)
T ss_pred CeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 4445779999999999887532 1358999986432 22235688887653
No 189
>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n
Probab=94.97 E-value=0.021 Score=41.80 Aligned_cols=48 Identities=29% Similarity=0.342 Sum_probs=34.0
Q ss_pred ccccceeecCCCcceEEEEeC------CCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLR------NSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~------~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
|.-.+.||+|+||.||++... ++..+++|.+..........|.+|+++
T Consensus 7 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~ 60 (291)
T cd05094 7 IVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAEL 60 (291)
T ss_pred eEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHH
Confidence 455578999999999999752 345688988864433334568888764
No 190
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=94.96 E-value=0.0032 Score=37.15 Aligned_cols=20 Identities=15% Similarity=0.127 Sum_probs=12.5
Q ss_pred CcccccHHHHHHhhcCcccc
Q 043043 90 LGLKIPYVEIKFATHNFDRK 109 (154)
Q Consensus 90 ~~~~~~~~~l~~at~~f~~~ 109 (154)
....+||+|-..|...|..+
T Consensus 53 YIDP~TYEDP~qAV~eFAkE 72 (75)
T PF14575_consen 53 YIDPHTYEDPNQAVREFAKE 72 (75)
T ss_dssp ---GGGSSSHHHHHHHCSSB
T ss_pred ecCcccccCHHHHHHHHHhh
Confidence 34467888888887777643
No 191
>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants. Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati
Probab=94.95 E-value=0.053 Score=40.71 Aligned_cols=49 Identities=20% Similarity=0.252 Sum_probs=34.2
Q ss_pred CccccceeecCCCcceEEEEe-CCCCEEEEEEecCC--CCCChHHHHHHHhh
Q 043043 105 NFDRKLVMGKGAFGNVYRGTL-RNSMKVAVKRGETG--SGQGLPEFQTAIIV 153 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~--~~~~~~~f~~e~~~ 153 (154)
.|.....||+|+||.||++.- .++..||+|.+... .......+.+|+.+
T Consensus 6 ~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~ 57 (337)
T cd07858 6 KYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKL 57 (337)
T ss_pred ceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHH
Confidence 455567899999999999985 45789999998532 22223455566543
No 192
>PTZ00024 cyclin-dependent protein kinase; Provisional
Probab=94.89 E-value=0.048 Score=40.81 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=24.3
Q ss_pred ceeecCCCcceEEEEeC-CCCEEEEEEec
Q 043043 110 LVMGKGAFGNVYRGTLR-NSMKVAVKRGE 137 (154)
Q Consensus 110 ~~iG~g~~g~vy~g~l~-~g~~vaVK~l~ 137 (154)
+.||.|+||.||++.-. ++..+|+|.+.
T Consensus 15 ~~ig~G~~g~vy~~~~~~~~~~vaiK~~~ 43 (335)
T PTZ00024 15 AHLGEGTYGKVEKAYDTLTGKIVAIKKVK 43 (335)
T ss_pred hcccCCCceeEEEEEECCCCCeEEEEEee
Confidence 56999999999999864 67899999884
No 193
>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=94.83 E-value=0.032 Score=41.17 Aligned_cols=48 Identities=21% Similarity=0.338 Sum_probs=32.9
Q ss_pred ccccceeecCCCcceEEEEeC--------CCCEEEEEEecCC-CCCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLR--------NSMKVAVKRGETG-SGQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~--------~g~~vaVK~l~~~-~~~~~~~f~~e~~~ 153 (154)
+.....||+|+||.||++... ++..+++|.+... ......++.+|+.+
T Consensus 17 ~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~ 73 (304)
T cd05101 17 LTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEM 73 (304)
T ss_pred eeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHH
Confidence 455577999999999999741 2357999998533 22234567777654
No 194
>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK
Probab=94.81 E-value=0.05 Score=41.16 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=35.9
Q ss_pred cCccccceeecCCCcceEEEEeC-CCCEEEEEEecCC--CCCChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETG--SGQGLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~--~~~~~~~f~~e~~~ 153 (154)
..|.....||+|+||.||++.-. ++..+|+|.+... ......++.+|+++
T Consensus 16 ~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~ 68 (353)
T cd07850 16 KRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVL 68 (353)
T ss_pred cceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHH
Confidence 45677788999999999999864 6789999998532 22223456667654
No 195
>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3. Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r
Probab=94.78 E-value=0.042 Score=40.03 Aligned_cols=47 Identities=26% Similarity=0.462 Sum_probs=30.0
Q ss_pred ccccceeecCCCcceEEEEeC-CCC----EEEEEEecCCCCC-ChHHHHHHHh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLR-NSM----KVAVKRGETGSGQ-GLPEFQTAII 152 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~-~g~----~vaVK~l~~~~~~-~~~~f~~e~~ 152 (154)
|...+.||+|+||.||+|... ++. .+++|.+...... ...++..|+.
T Consensus 9 ~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 61 (279)
T cd05111 9 LRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHML 61 (279)
T ss_pred ceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHH
Confidence 444577999999999999873 343 4778887533221 2245555543
No 196
>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter
Probab=94.77 E-value=0.032 Score=40.52 Aligned_cols=48 Identities=29% Similarity=0.484 Sum_probs=33.8
Q ss_pred ccccceeecCCCcceEEEEeC-CCCEEEEEEecCCC-CCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
|+..+.||.|.||.||+|... ++..+|+|.+.... ......|.+|+.+
T Consensus 6 y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~ 55 (277)
T cd06640 6 FTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITV 55 (277)
T ss_pred hhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHH
Confidence 344466999999999999874 57889999885322 2223567777654
No 197
>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase. Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki
Probab=94.77 E-value=0.033 Score=39.82 Aligned_cols=45 Identities=29% Similarity=0.420 Sum_probs=33.1
Q ss_pred ccccceeecCCCcceEEEEeCCCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLRNSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
|...+.||+|+||.||++.. ++..+++|.+.... ....|.+|+.+
T Consensus 8 ~~~~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~~--~~~~~~~e~~~ 52 (254)
T cd05083 8 LTLGEIIGEGEFGAVLQGEY-TGQKVAVKNIKCDV--TAQAFLEETAV 52 (254)
T ss_pred ceeeeeeccCCCCceEeccc-CCCceEEEeecCcc--hHHHHHHHHHH
Confidence 44457899999999999986 56789999985321 23567777754
No 198
>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express
Probab=94.76 E-value=0.035 Score=40.80 Aligned_cols=44 Identities=23% Similarity=0.317 Sum_probs=32.3
Q ss_pred ceeecCCCcceEEEEeC-CCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 110 LVMGKGAFGNVYRGTLR-NSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 110 ~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
..||+|+||.||++... ++..+|+|.+..........|.+|+.+
T Consensus 28 ~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~ 72 (292)
T cd06658 28 IKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVI 72 (292)
T ss_pred hcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHH
Confidence 45899999999999864 578899999864433334567777653
No 199
>smart00090 RIO RIO-like kinase.
Probab=94.62 E-value=0.04 Score=39.72 Aligned_cols=33 Identities=24% Similarity=0.095 Sum_probs=27.9
Q ss_pred ccccceeecCCCcceEEEE--eCCCCEEEEEEecC
Q 043043 106 FDRKLVMGKGAFGNVYRGT--LRNSMKVAVKRGET 138 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~--l~~g~~vaVK~l~~ 138 (154)
+.-...||+|++|.||++. ..+|..||+|.+..
T Consensus 30 ~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~ 64 (237)
T smart00090 30 SAIGGCISTGKEANVYHALDFDGSGKERAVKIYRT 64 (237)
T ss_pred HHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEc
Confidence 3445679999999999998 67899999999853
No 200
>PF15345 TMEM51: Transmembrane protein 51
Probab=94.59 E-value=0.13 Score=36.65 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=18.2
Q ss_pred eeEEEehhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 043043 21 FMAVVGSVLACSVLICILEIVLSFVLIWRKQKP 53 (154)
Q Consensus 21 ~~~ii~~~v~~~vll~i~~~~~~~~~~~r~~~~ 53 (154)
...++-++||+.++++++.+|+.++.+||+++.
T Consensus 57 t~SVAyVLVG~Gv~LLLLSICL~IR~KRr~rq~ 89 (233)
T PF15345_consen 57 TFSVAYVLVGSGVALLLLSICLSIRDKRRRRQG 89 (233)
T ss_pred eEEEEEehhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444566666666666666655544444433
No 201
>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2. Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin
Probab=94.58 E-value=0.035 Score=41.11 Aligned_cols=48 Identities=25% Similarity=0.345 Sum_probs=33.7
Q ss_pred ccccceeecCCCcceEEEEeC-CCCEEEEEEecCCC---CCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGS---GQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~---~~~~~~f~~e~~~ 153 (154)
|+..+.||+|++|.||+|... ++..+++|.+.... .....+|.+|+++
T Consensus 17 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~ 68 (308)
T cd06634 17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRF 68 (308)
T ss_pred HHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHH
Confidence 455567999999999999874 56789999985321 1223456777654
No 202
>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK
Probab=94.51 E-value=0.06 Score=40.56 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=35.1
Q ss_pred cCccccceeecCCCcceEEEEeC-CCCEEEEEEecCC--CCCChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETG--SGQGLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~--~~~~~~~f~~e~~~ 153 (154)
++|.....||+|.+|.||++... ++..+|+|.+... .......+.+|+.+
T Consensus 15 ~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~ 67 (343)
T cd07851 15 DRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRL 67 (343)
T ss_pred CceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHH
Confidence 45666788999999999999885 5688999998532 12223445566643
No 203
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=94.47 E-value=0.011 Score=33.40 Aligned_cols=9 Identities=11% Similarity=0.091 Sum_probs=0.0
Q ss_pred EehhHHHHH
Q 043043 25 VGSVLACSV 33 (154)
Q Consensus 25 i~~~v~~~v 33 (154)
+++++|+++
T Consensus 12 aavIaG~Vv 20 (64)
T PF01034_consen 12 AAVIAGGVV 20 (64)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 444444333
No 204
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=94.47 E-value=0.07 Score=43.12 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=29.0
Q ss_pred CccccceeecCCCcceEEEEeCC-CCEEEEEEecCC
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLRN-SMKVAVKRGETG 139 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~~-g~~vaVK~l~~~ 139 (154)
.|+. .-||+|++|.||++++.+ |..||||.+...
T Consensus 121 ~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~ 155 (537)
T PRK04750 121 DFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPD 155 (537)
T ss_pred hcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcc
Confidence 3554 569999999999999987 999999999644
No 205
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=94.47 E-value=0.011 Score=43.87 Aligned_cols=21 Identities=10% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCC
Q 043043 34 LICILEIVLSFVLIWRKQKPD 54 (154)
Q Consensus 34 ll~i~~~~~~~~~~~r~~~~~ 54 (154)
+++|+++++++|+||||+.+.
T Consensus 158 iLLIA~iIa~icyrrkR~GK~ 178 (290)
T PF05454_consen 158 ILLIAGIIACICYRRKRKGKM 178 (290)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHhhhhhhcccc
Confidence 333444455555555554433
No 206
>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=94.45 E-value=0.031 Score=41.52 Aligned_cols=49 Identities=22% Similarity=0.365 Sum_probs=33.0
Q ss_pred CccccceeecCCCcceEEEEeC--------CCCEEEEEEecCCC-CCChHHHHHHHhh
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLR--------NSMKVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~--------~g~~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
+|...+.||+|+||.||++... ....+|+|.+.... .....+|..|+.+
T Consensus 13 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~ 70 (314)
T cd05099 13 RLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMEL 70 (314)
T ss_pred HeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHH
Confidence 4555688999999999998642 23568999886332 2223457777654
No 207
>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3. Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co
Probab=94.44 E-value=0.1 Score=38.74 Aligned_cols=48 Identities=27% Similarity=0.326 Sum_probs=33.2
Q ss_pred ccccceeecCCCcceEEEEeC-CCCEEEEEEecCCCCCC---hHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGSGQG---LPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~~~~---~~~f~~e~~~ 153 (154)
|...+.||+|+||.||+|... ++..+++|.+....... ...+.+|+++
T Consensus 23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~ 74 (313)
T cd06633 23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKF 74 (313)
T ss_pred hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHH
Confidence 344467999999999999864 57889999986432222 2356666654
No 208
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=94.39 E-value=0.11 Score=26.20 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=11.6
Q ss_pred eEEEehhHHHHHHHHHHHHHHHHHHHH
Q 043043 22 MAVVGSVLACSVLICILEIVLSFVLIW 48 (154)
Q Consensus 22 ~~ii~~~v~~~vll~i~~~~~~~~~~~ 48 (154)
+++++++++.++ +.+.++...|++||
T Consensus 7 aIIv~V~vg~~i-iii~~~~YaCcykk 32 (38)
T PF02439_consen 7 AIIVAVVVGMAI-IIICMFYYACCYKK 32 (38)
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHcc
Confidence 445555555444 44443333344333
No 209
>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=94.38 E-value=0.068 Score=41.90 Aligned_cols=48 Identities=21% Similarity=0.232 Sum_probs=35.4
Q ss_pred cccceeecCCCcceEEEEe-CCCCEEEEEEecCCCCCC-hHHHHHHHhhC
Q 043043 107 DRKLVMGKGAFGNVYRGTL-RNSMKVAVKRGETGSGQG-LPEFQTAIIVL 154 (154)
Q Consensus 107 ~~~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~~~~~-~~~f~~e~~~l 154 (154)
....+||.|..+.||++.. +.+..||||+++.+..+. .+...+|+..|
T Consensus 29 eL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~m 78 (516)
T KOG0582|consen 29 ELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTM 78 (516)
T ss_pred eEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHh
Confidence 3446799999999999975 667999999997543333 36677777543
No 210
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=94.34 E-value=0.027 Score=42.05 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=11.6
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHhcC
Q 043043 26 GSVLACSVLICILEIVLSFVLIWRKQ 51 (154)
Q Consensus 26 ~~~v~~~vll~i~~~~~~~~~~~r~~ 51 (154)
+.++++++++++++++.+.+++||++
T Consensus 260 aSiiaIliIVLIMvIIYLILRYRRKK 285 (299)
T PF02009_consen 260 ASIIAILIIVLIMVIIYLILRYRRKK 285 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444433
No 211
>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=94.34 E-value=0.049 Score=40.23 Aligned_cols=48 Identities=23% Similarity=0.309 Sum_probs=32.5
Q ss_pred ccccceeecCCCcceEEEEeC--------CCCEEEEEEecCCC-CCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLR--------NSMKVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~--------~g~~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
+.-.+.||+|+||.||++... ....+|+|.+.... .....++..|+++
T Consensus 20 ~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~ 76 (307)
T cd05098 20 LVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEM 76 (307)
T ss_pred eEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHH
Confidence 455577999999999998752 23569999986432 2223457777654
No 212
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=94.30 E-value=0.17 Score=40.89 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=20.9
Q ss_pred cCccccceeecCCCcceEEEEeCCCCE
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLRNSMK 130 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~~g~~ 130 (154)
..+...+.||+|+||.||+|.+.+...
T Consensus 333 ~~~~~~~~iG~G~~g~Vy~~~~~~~~~ 359 (535)
T PRK09605 333 RRKIPDHLIGKGAEADIKKGEYLGRDA 359 (535)
T ss_pred cccCccceeccCCcEEEEEEeecCccc
Confidence 334556889999999999999865443
No 213
>PHA03212 serine/threonine kinase US3; Provisional
Probab=94.19 E-value=0.071 Score=41.21 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=32.6
Q ss_pred cCccccceeecCCCcceEEEEe-CCCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTL-RNSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
.+|.....||+|+||.||++.- ..+..||+|.... ..+.+|+++
T Consensus 92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~~------~~~~~E~~i 136 (391)
T PHA03212 92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQR------GGTATEAHI 136 (391)
T ss_pred CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechhh------hhhHHHHHH
Confidence 4567777899999999999976 4578899997632 235566654
No 214
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=94.15 E-value=0.069 Score=39.27 Aligned_cols=32 Identities=22% Similarity=0.220 Sum_probs=14.4
Q ss_pred CCCcceeEEE-ehhHHHHHHHHHHHHHHHHHHH
Q 043043 16 PKKKHFMAVV-GSVLACSVLICILEIVLSFVLI 47 (154)
Q Consensus 16 ~~~~~~~~ii-~~~v~~~vll~i~~~~~~~~~~ 47 (154)
+++...|.++ +++.|++++.++..+++++.+.
T Consensus 207 ~~~~~~W~iv~g~~~G~~~L~ll~~lv~~~vr~ 239 (278)
T PF06697_consen 207 RKRSWWWKIVVGVVGGVVLLGLLSLLVAMLVRY 239 (278)
T ss_pred CCcceeEEEEEEehHHHHHHHHHHHHHHhhhhh
Confidence 4455555544 4455544444443333333333
No 215
>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]
Probab=93.94 E-value=0.086 Score=42.70 Aligned_cols=30 Identities=33% Similarity=0.436 Sum_probs=25.2
Q ss_pred cceeecCCCcceEEEEe-CCCCEEEEEEecC
Q 043043 109 KLVMGKGAFGNVYRGTL-RNSMKVAVKRGET 138 (154)
Q Consensus 109 ~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~ 138 (154)
..+||+|.||.|.++.= ..+..||||.+..
T Consensus 191 ~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN 221 (586)
T KOG0667|consen 191 LEVLGKGSFGQVVKAYDHKTGEIVAIKIIKN 221 (586)
T ss_pred EEEecccccceeEEEEecCCCcEEEEEeecc
Confidence 45799999999999875 4578999999964
No 216
>PHA02882 putative serine/threonine kinase; Provisional
Probab=93.94 E-value=0.081 Score=38.92 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=23.7
Q ss_pred CccccceeecCCCcceEEEEeCCC----CEEEEEEe
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLRNS----MKVAVKRG 136 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~~g----~~vaVK~l 136 (154)
.|...++||+|+||.||++...+. ..+++|..
T Consensus 13 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~ 48 (294)
T PHA02882 13 EWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIE 48 (294)
T ss_pred ceEEeeEEecCCCceEEEEEEcCCcccccceEEEec
Confidence 455667899999999999998553 34556543
No 217
>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=93.75 E-value=0.065 Score=40.56 Aligned_cols=55 Identities=16% Similarity=0.261 Sum_probs=41.1
Q ss_pred cHHHHHHhhcCccccceeecCCCcceEEEE-eCCCCEEEEEEecCCCCCChHHHHHHHhhC
Q 043043 95 PYVEIKFATHNFDRKLVMGKGAFGNVYRGT-LRNSMKVAVKRGETGSGQGLPEFQTAIIVL 154 (154)
Q Consensus 95 ~~~~l~~at~~f~~~~~iG~g~~g~vy~g~-l~~g~~vaVK~l~~~~~~~~~~f~~e~~~l 154 (154)
+++|+..-|. .+||+|.|+.|-.++ +..|...|||.++....-.+....+|++++
T Consensus 74 ~F~d~YkLt~-----e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f 129 (463)
T KOG0607|consen 74 KFEDMYKLTS-----ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETF 129 (463)
T ss_pred hHHHHHHhHH-----HHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHH
Confidence 4677777663 569999999998765 467889999999755444556777888753
No 218
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=93.65 E-value=0.019 Score=45.13 Aligned_cols=22 Identities=32% Similarity=0.620 Sum_probs=0.0
Q ss_pred EEEehhHHHHHHHHHHHHHHHH
Q 043043 23 AVVGSVLACSVLICILEIVLSF 44 (154)
Q Consensus 23 ~ii~~~v~~~vll~i~~~~~~~ 44 (154)
++++++++++++++++++++++
T Consensus 353 ~~l~vVlgvavlivVv~viv~v 374 (439)
T PF02480_consen 353 ALLGVVLGVAVLIVVVGVIVWV 374 (439)
T ss_dssp ----------------------
T ss_pred chHHHHHHHHHHHHHHHHHhhe
Confidence 3444444444444444444333
No 219
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=93.52 E-value=0.069 Score=46.14 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=36.2
Q ss_pred cCccccceeecCCCcceEEEEeC-CCCEEEEEEecCCC--CCChHHHHHHHhhC
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGS--GQGLPEFQTAIIVL 154 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~--~~~~~~f~~e~~~l 154 (154)
..|.....||+|+||.||++... .+..+|+|.+.... ......|..|+.+|
T Consensus 13 ~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL 66 (1021)
T PTZ00266 13 NEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVM 66 (1021)
T ss_pred CCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHH
Confidence 45666678999999999999874 45678999885332 22235677887653
No 220
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=93.37 E-value=0.16 Score=30.53 Aligned_cols=10 Identities=0% Similarity=-0.090 Sum_probs=3.8
Q ss_pred HHHHHHHHhc
Q 043043 41 VLSFVLIWRK 50 (154)
Q Consensus 41 ~~~~~~~~r~ 50 (154)
.+.||..|+|
T Consensus 51 wfvCC~kRkr 60 (94)
T PF05393_consen 51 WFVCCKKRKR 60 (94)
T ss_pred HHHHHHHhhh
Confidence 3333433333
No 221
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=93.32 E-value=0.015 Score=43.59 Aligned_cols=47 Identities=23% Similarity=0.418 Sum_probs=34.3
Q ss_pred ccccceeecCCCcceEEEEe-CCCCEEEEEEecCCCCCChHHHHHHHhhC
Q 043043 106 FDRKLVMGKGAFGNVYRGTL-RNSMKVAVKRGETGSGQGLPEFQTAIIVL 154 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~~~~~~~~f~~e~~~l 154 (154)
|+-...||+|.||.||++.- ..|..+|+|.+...+ +..+.+.|+.+|
T Consensus 35 FDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~s--DLQEIIKEISIM 82 (502)
T KOG0574|consen 35 FDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVDT--DLQEIIKEISIM 82 (502)
T ss_pred HHHHHHhcCCcchHHHHHHHhccCcEEEEEecCccc--hHHHHHHHHHHH
Confidence 34446699999999999876 468899999985432 345677777654
No 222
>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]
Probab=93.26 E-value=0.067 Score=40.62 Aligned_cols=33 Identities=30% Similarity=0.491 Sum_probs=27.4
Q ss_pred CccccceeecCCCcceEEEEeC-CCCEEEEEEec
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGE 137 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~ 137 (154)
.|..-++||+|+||.||..+-. .+...|.|.|+
T Consensus 26 dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~ 59 (357)
T KOG0598|consen 26 DFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLK 59 (357)
T ss_pred heeeeeeeeccCCceEEEEEEcccCceeehhhhh
Confidence 4666789999999999988764 47789999995
No 223
>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=93.13 E-value=0.12 Score=38.80 Aligned_cols=48 Identities=21% Similarity=0.335 Sum_probs=32.0
Q ss_pred ccccceeecCCCcceEEEEeC--------CCCEEEEEEecCCC-CCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLR--------NSMKVAVKRGETGS-GQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~--------~g~~vaVK~l~~~~-~~~~~~f~~e~~~ 153 (154)
+.-...||+|+||.||++... ....+|+|.+.... .....+|.+|+++
T Consensus 14 ~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~ 70 (334)
T cd05100 14 LTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEM 70 (334)
T ss_pred eeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHH
Confidence 344577999999999998742 12368999885322 2223567777754
No 224
>PHA03211 serine/threonine kinase US3; Provisional
Probab=93.11 E-value=0.13 Score=40.84 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=26.3
Q ss_pred CccccceeecCCCcceEEEEeCC-CCEEEEEEe
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLRN-SMKVAVKRG 136 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~~-g~~vaVK~l 136 (154)
+|.....||+|+||.||++..++ +..||+|..
T Consensus 170 gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~ 202 (461)
T PHA03211 170 GFAIHRALTPGSEGCVFESSHPDYPQRVVVKAG 202 (461)
T ss_pred CeEEEEEEccCCCeEEEEEEECCCCCEEEEecc
Confidence 46666789999999999999864 678999964
No 225
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=92.95 E-value=0.1 Score=35.97 Aligned_cols=23 Identities=9% Similarity=0.160 Sum_probs=10.9
Q ss_pred ceeEEEehhHHHHHHHHHHHHHH
Q 043043 20 HFMAVVGSVLACSVLICILEIVL 42 (154)
Q Consensus 20 ~~~~ii~~~v~~~vll~i~~~~~ 42 (154)
...++++++++++++++++++++
T Consensus 77 ~~~iivgvi~~Vi~Iv~~Iv~~~ 99 (179)
T PF13908_consen 77 ITGIIVGVICGVIAIVVLIVCFC 99 (179)
T ss_pred eeeeeeehhhHHHHHHHhHhhhe
Confidence 44455666555554443333333
No 226
>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]
Probab=92.76 E-value=0.06 Score=41.59 Aligned_cols=50 Identities=20% Similarity=0.248 Sum_probs=36.3
Q ss_pred hhcCccccceeecCCCcceEEEEeCC----CCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 102 ATHNFDRKLVMGKGAFGNVYRGTLRN----SMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 102 at~~f~~~~~iG~g~~g~vy~g~l~~----g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
-.+.+...+.||+|.|+.||++.+.. ...||+|.+...+. .....+|+++
T Consensus 34 ~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~--p~ri~~El~~ 87 (418)
T KOG1167|consen 34 ISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSS--PSRILNELEM 87 (418)
T ss_pred hhhhhhhhccccccchhhhhhhhHhhhccccceEeeeecccccC--chHHHHHHHH
Confidence 34557788999999999999998743 46899999965443 3345566654
No 227
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=92.43 E-value=0.21 Score=38.95 Aligned_cols=45 Identities=29% Similarity=0.319 Sum_probs=31.5
Q ss_pred ceeecCCCcceEEEEe-CCCCEEEEEEecCC-----CC--CChHHHHHHHhhC
Q 043043 110 LVMGKGAFGNVYRGTL-RNSMKVAVKRGETG-----SG--QGLPEFQTAIIVL 154 (154)
Q Consensus 110 ~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~-----~~--~~~~~f~~e~~~l 154 (154)
+.||+|+||.|-++.= ..|..||||.+... +. .......+|+++|
T Consensus 178 ~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieIL 230 (475)
T KOG0615|consen 178 KTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEIL 230 (475)
T ss_pred eeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHH
Confidence 4699999999999875 46889999999432 11 1122346888775
No 228
>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=92.35 E-value=0.2 Score=37.64 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=25.7
Q ss_pred CccccceeecCCCcceEEEEeCCC--CEEEEEEecC
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLRNS--MKVAVKRGET 138 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~~g--~~vaVK~l~~ 138 (154)
++.....||+|+||.||.+.-.+. ..+|+|.-..
T Consensus 19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~ 54 (322)
T KOG1164|consen 19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKK 54 (322)
T ss_pred ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEe
Confidence 566678899999999999986443 3677776643
No 229
>PTZ00046 rifin; Provisional
Probab=92.30 E-value=0.09 Score=40.03 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCC
Q 043043 28 VLACSVLICILEIVLSFVLIWRKQK 52 (154)
Q Consensus 28 ~v~~~vll~i~~~~~~~~~~~r~~~ 52 (154)
++++++++++++++.+..|+||+++
T Consensus 321 iiAIvVIVLIMvIIYLILRYRRKKK 345 (358)
T PTZ00046 321 IVAIVVIVLIMVIIYLILRYRRKKK 345 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcch
Confidence 3334444444444444444444443
No 230
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=92.12 E-value=0.12 Score=40.28 Aligned_cols=31 Identities=19% Similarity=0.088 Sum_probs=20.3
Q ss_pred CCCCcceeEEEehhHHHHHHHHHHHHHHHHH
Q 043043 15 GPKKKHFMAVVGSVLACSVLICILEIVLSFV 45 (154)
Q Consensus 15 ~~~~~~~~~ii~~~v~~~vll~i~~~~~~~~ 45 (154)
.++..+.+.|++|.|+++++|.-++-||.||
T Consensus 360 n~s~LstgaIaGIsvavvvvVgglvGfLcWw 390 (397)
T PF03302_consen 360 NKSGLSTGAIAGISVAVVVVVGGLVGFLCWW 390 (397)
T ss_pred ccccccccceeeeeehhHHHHHHHHHHHhhh
Confidence 3445577889999888777776444444443
No 231
>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=92.01 E-value=0.38 Score=35.22 Aligned_cols=41 Identities=24% Similarity=0.489 Sum_probs=30.6
Q ss_pred HHHHHHhhcCccccceeecCCCcceEEEE-eCCCCEEEEEEec
Q 043043 96 YVEIKFATHNFDRKLVMGKGAFGNVYRGT-LRNSMKVAVKRGE 137 (154)
Q Consensus 96 ~~~l~~at~~f~~~~~iG~g~~g~vy~g~-l~~g~~vaVK~l~ 137 (154)
..++..+ ..+.-.+.||.|+||.+|.|. +.+|..||+|.=.
T Consensus 8 ~~~~iv~-gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es 49 (341)
T KOG1163|consen 8 LEELIVG-GKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLES 49 (341)
T ss_pred hhhheec-cceEEEEeecCCchhheeeeeeccCCceEEEEeec
Confidence 3444443 335556789999999999997 4789999999864
No 232
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=91.99 E-value=0.2 Score=39.79 Aligned_cols=48 Identities=10% Similarity=0.075 Sum_probs=32.2
Q ss_pred ccccceeecCCCcceEEEEeC-C-CCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTLR-N-SMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~-~-g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
|...+.||+|++|.||++.-. + +..|++|.+..........+..|+.+
T Consensus 69 y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~ 118 (478)
T PTZ00267 69 YVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHC 118 (478)
T ss_pred EEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHH
Confidence 444578999999999998753 3 56788887643333223456667754
No 233
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=91.96 E-value=0.1 Score=39.59 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCC
Q 043043 28 VLACSVLICILEIVLSFVLIWRKQK 52 (154)
Q Consensus 28 ~v~~~vll~i~~~~~~~~~~~r~~~ 52 (154)
++++++++++++++.+..|+||+++
T Consensus 316 iIAIvvIVLIMvIIYLILRYRRKKK 340 (353)
T TIGR01477 316 IIAILIIVLIMVIIYLILRYRRKKK 340 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcch
Confidence 3333444444444444444444433
No 234
>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]
Probab=91.95 E-value=0.13 Score=39.08 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=32.0
Q ss_pred ccccceeecCCCcceEEEEe-CCCCEEEEEEecC--CCCCChHHHHHHHhh
Q 043043 106 FDRKLVMGKGAFGNVYRGTL-RNSMKVAVKRGET--GSGQGLPEFQTAIIV 153 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~--~~~~~~~~f~~e~~~ 153 (154)
+.....||+|.||.|..+.- ++|..||+|++.. ......+.-.+|+.+
T Consensus 24 y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElkl 74 (359)
T KOG0660|consen 24 YVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKL 74 (359)
T ss_pred ecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHH
Confidence 33346699999999999876 4679999999952 122222344555544
No 235
>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]
Probab=91.94 E-value=0.05 Score=42.91 Aligned_cols=28 Identities=32% Similarity=0.535 Sum_probs=24.0
Q ss_pred ceeecCCCcceEEEEe-CCCCEEEEEEec
Q 043043 110 LVMGKGAFGNVYRGTL-RNSMKVAVKRGE 137 (154)
Q Consensus 110 ~~iG~g~~g~vy~g~l-~~g~~vaVK~l~ 137 (154)
..||.|.||.||+++- ..|..||||++.
T Consensus 16 ~klGDGTfGsV~la~~~~~~~~VAIK~MK 44 (538)
T KOG0661|consen 16 RKLGDGTFGSVYLAKSKETGELVAIKKMK 44 (538)
T ss_pred HHhcCCcceeEEEeeecCCCceeeHHHHH
Confidence 5699999999999986 457789999984
No 236
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=91.52 E-value=0.04 Score=31.13 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=0.0
Q ss_pred cceeEEEehhHHHHHHHHHH
Q 043043 19 KHFMAVVGSVLACSVLICIL 38 (154)
Q Consensus 19 ~~~~~ii~~~v~~~vll~i~ 38 (154)
....+|++++++.+++++++
T Consensus 10 vlaavIaG~Vvgll~ailLI 29 (64)
T PF01034_consen 10 VLAAVIAGGVVGLLFAILLI 29 (64)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34567777777766655544
No 237
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=91.48 E-value=0.25 Score=36.38 Aligned_cols=10 Identities=30% Similarity=0.424 Sum_probs=3.9
Q ss_pred HHHHHHHHhc
Q 043043 41 VLSFVLIWRK 50 (154)
Q Consensus 41 ~~~~~~~~r~ 50 (154)
+++.|.+|||
T Consensus 277 iLYiWlyrrR 286 (295)
T TIGR01478 277 ILYIWLYRRR 286 (295)
T ss_pred HHHHHHHHhh
Confidence 3333444443
No 238
>PHA03207 serine/threonine kinase US3; Provisional
Probab=91.42 E-value=0.28 Score=37.82 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=26.5
Q ss_pred CccccceeecCCCcceEEEEeC---CCCEEEEEEecC
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLR---NSMKVAVKRGET 138 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~---~g~~vaVK~l~~ 138 (154)
.|.....||+|+||.||++... .+..|++|.+..
T Consensus 93 ~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~ 129 (392)
T PHA03207 93 QYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTG 129 (392)
T ss_pred ceEEEEeecCCCCeEEEEEEEcCCccceeEEEEeccc
Confidence 4666678999999999998763 346799998853
No 239
>PF15069 FAM163: FAM163 family
Probab=91.36 E-value=0.6 Score=30.83 Aligned_cols=25 Identities=24% Similarity=0.594 Sum_probs=14.4
Q ss_pred eeEEEehhHHHHHHHHHHHHHHHHH
Q 043043 21 FMAVVGSVLACSVLICILEIVLSFV 45 (154)
Q Consensus 21 ~~~ii~~~v~~~vll~i~~~~~~~~ 45 (154)
..+|.|.+++.++||+|++++.+++
T Consensus 5 TvVItGgILAtVILLcIIaVLCYCR 29 (143)
T PF15069_consen 5 TVVITGGILATVILLCIIAVLCYCR 29 (143)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHh
Confidence 3456666666666666665555443
No 240
>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=91.23 E-value=0.37 Score=37.17 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=26.9
Q ss_pred CccccceeecCCCcceEEEEe-CCCCEEEEEEecC
Q 043043 105 NFDRKLVMGKGAFGNVYRGTL-RNSMKVAVKRGET 138 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~ 138 (154)
++.....||+|.||.||.+.- ..+..||+|.++.
T Consensus 18 ~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~ 52 (370)
T KOG0583|consen 18 KYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDR 52 (370)
T ss_pred ceeeeeeecCCCCeeEEEeeeccCCCeEEEEEech
Confidence 445557799999999999965 4679999997653
No 241
>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]
Probab=91.21 E-value=0.31 Score=39.15 Aligned_cols=50 Identities=24% Similarity=0.373 Sum_probs=35.3
Q ss_pred CccccceeecCCCcceEEEE-eCCCCEEEEEEecCCCCCChHHHHHHHhhC
Q 043043 105 NFDRKLVMGKGAFGNVYRGT-LRNSMKVAVKRGETGSGQGLPEFQTAIIVL 154 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~-l~~g~~vaVK~l~~~~~~~~~~f~~e~~~l 154 (154)
.|.....||+|..|.||.+. ...+..||||+++...-....-..+|+.+|
T Consensus 274 ~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm 324 (550)
T KOG0578|consen 274 KYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVM 324 (550)
T ss_pred hhcchhhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHH
Confidence 34455679999999999875 456788999999754333334456777654
No 242
>PTZ00370 STEVOR; Provisional
Probab=91.13 E-value=0.28 Score=36.23 Aligned_cols=9 Identities=33% Similarity=0.357 Sum_probs=3.6
Q ss_pred HHHHHHHhc
Q 043043 42 LSFVLIWRK 50 (154)
Q Consensus 42 ~~~~~~~r~ 50 (154)
++.|.+|||
T Consensus 274 lYiwlyrrR 282 (296)
T PTZ00370 274 LYIWLYRRR 282 (296)
T ss_pred HHHHHHHhh
Confidence 333444443
No 243
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.07 E-value=0.73 Score=25.96 Aligned_cols=33 Identities=18% Similarity=0.119 Sum_probs=22.9
Q ss_pred CCcceeEEEehhHHHHHHHHHHHHHHHHHHHHh
Q 043043 17 KKKHFMAVVGSVLACSVLICILEIVLSFVLIWR 49 (154)
Q Consensus 17 ~~~~~~~ii~~~v~~~vll~i~~~~~~~~~~~r 49 (154)
+...-++|+.++++.+++++++.-++++.+.++
T Consensus 8 KGlnPGlIVLlvV~g~ll~flvGnyvlY~Yaqk 40 (69)
T PF04689_consen 8 KGLNPGLIVLLVVAGLLLVFLVGNYVLYVYAQK 40 (69)
T ss_pred cCCCCCeEEeehHHHHHHHHHHHHHHHHHHHhh
Confidence 445566788888888888888876666655443
No 244
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=91.04 E-value=0.43 Score=34.45 Aligned_cols=36 Identities=14% Similarity=-0.147 Sum_probs=28.9
Q ss_pred hcCccccceeecCCCcceEEEEeCCCCEEEEEEecCC
Q 043043 103 THNFDRKLVMGKGAFGNVYRGTLRNSMKVAVKRGETG 139 (154)
Q Consensus 103 t~~f~~~~~iG~g~~g~vy~g~l~~g~~vaVK~l~~~ 139 (154)
.+++...+++|.|+||.||...- ++..+++|.+...
T Consensus 30 ~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~ 65 (232)
T PRK10359 30 SYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPK 65 (232)
T ss_pred hCceEEEEEecCCCceEEEEEec-CCCcEEEEEechh
Confidence 35677788999999999998655 5668999999543
No 245
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=91.02 E-value=0.17 Score=38.04 Aligned_cols=29 Identities=10% Similarity=0.265 Sum_probs=14.7
Q ss_pred eEEEehhHHHHHHHHHHHHHHHHHHHHhc
Q 043043 22 MAVVGSVLACSVLICILEIVLSFVLIWRK 50 (154)
Q Consensus 22 ~~ii~~~v~~~vll~i~~~~~~~~~~~r~ 50 (154)
..++.++||++++.+++++++.|+..|||
T Consensus 270 ~~~vPIaVG~~La~lvlivLiaYli~Rrr 298 (306)
T PF01299_consen 270 SDLVPIAVGAALAGLVLIVLIAYLIGRRR 298 (306)
T ss_pred cchHHHHHHHHHHHHHHHHHHhheeEecc
Confidence 45666666666654444444344333333
No 246
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=90.93 E-value=0.51 Score=29.94 Aligned_cols=19 Identities=5% Similarity=0.010 Sum_probs=10.7
Q ss_pred EEEehhHHHHHHHHHHHHH
Q 043043 23 AVVGSVLACSVLICILEIV 41 (154)
Q Consensus 23 ~ii~~~v~~~vll~i~~~~ 41 (154)
.++.+++|++..+.+.++.
T Consensus 84 ~aLp~VIGGLcaL~LaamG 102 (126)
T PF03229_consen 84 FALPLVIGGLCALTLAAMG 102 (126)
T ss_pred cchhhhhhHHHHHHHHHHH
Confidence 4556677766655544433
No 247
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=90.90 E-value=0.093 Score=35.03 Aligned_cols=26 Identities=15% Similarity=-0.043 Sum_probs=16.5
Q ss_pred CCCCCcceeEEEehhHHHHHHHHHHHH
Q 043043 14 NGPKKKHFMAVVGSVLACSVLICILEI 40 (154)
Q Consensus 14 ~~~~~~~~~~ii~~~v~~~vll~i~~~ 40 (154)
.+.++...++++|+.++++++ +++++
T Consensus 45 ~knknIVIGvVVGVGg~ill~-il~lv 70 (154)
T PF04478_consen 45 SKNKNIVIGVVVGVGGPILLG-ILALV 70 (154)
T ss_pred cCCccEEEEEEecccHHHHHH-HHHhh
Confidence 345567888888877765554 44444
No 248
>PHA03265 envelope glycoprotein D; Provisional
Probab=90.85 E-value=0.46 Score=36.08 Aligned_cols=29 Identities=21% Similarity=0.153 Sum_probs=17.5
Q ss_pred CCCcccCCCCCcceeEEEehhHHHHHHHH
Q 043043 8 GSVPVVNGPKKKHFMAVVGSVLACSVLIC 36 (154)
Q Consensus 8 ~~~~~~~~~~~~~~~~ii~~~v~~~vll~ 36 (154)
+-.+.++.+.+..++++||..+++++++.
T Consensus 337 ~~~~~~s~~~~~~~g~~ig~~i~glv~vg 365 (402)
T PHA03265 337 TKPPPTSKSNSTFVGISVGLGIAGLVLVG 365 (402)
T ss_pred cCCCCCCCCCCcccceEEccchhhhhhhh
Confidence 33445556666777788877665554443
No 249
>PHA03209 serine/threonine kinase US3; Provisional
Probab=90.76 E-value=0.4 Score=36.40 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=28.2
Q ss_pred hcCccccceeecCCCcceEEEEeC-CCCEEEEEEec
Q 043043 103 THNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGE 137 (154)
Q Consensus 103 t~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~ 137 (154)
..+|.....||+|.||.||++... .+..||+|...
T Consensus 65 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~ 100 (357)
T PHA03209 65 SLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQ 100 (357)
T ss_pred hcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCC
Confidence 346777789999999999999985 35688998753
No 250
>PF15050 SCIMP: SCIMP protein
Probab=90.72 E-value=0.3 Score=31.16 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 043043 31 CSVLICILEIVLSFVLIWRKQ 51 (154)
Q Consensus 31 ~~vll~i~~~~~~~~~~~r~~ 51 (154)
++++-+.++++++|.||+..+
T Consensus 16 II~vS~~lglIlyCvcR~~lR 36 (133)
T PF15050_consen 16 IILVSVVLGLILYCVCRWQLR 36 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344555566655554433
No 251
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=90.53 E-value=0.042 Score=45.20 Aligned_cols=43 Identities=35% Similarity=0.584 Sum_probs=33.5
Q ss_pred eecCCCcceEEEEeCCC-CEEEEEEecCCCCCChHHHHHHHhhC
Q 043043 112 MGKGAFGNVYRGTLRNS-MKVAVKRGETGSGQGLPEFQTAIIVL 154 (154)
Q Consensus 112 iG~g~~g~vy~g~l~~g-~~vaVK~l~~~~~~~~~~f~~e~~~l 154 (154)
||.|.||.||+++-.+. ...|-|.++..+.....+|.-|+++|
T Consensus 40 LGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeIL 83 (1187)
T KOG0579|consen 40 LGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEIL 83 (1187)
T ss_pred hcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhh
Confidence 89999999999987653 34567888766666667899888875
No 252
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=90.37 E-value=0.26 Score=42.52 Aligned_cols=32 Identities=34% Similarity=0.502 Sum_probs=27.2
Q ss_pred ccccceeecCCCcceEEEEeCCCCEEEEEEec
Q 043043 106 FDRKLVMGKGAFGNVYRGTLRNSMKVAVKRGE 137 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~~g~~vaVK~l~ 137 (154)
|.-...||+|+||.||+|.-.+|..||+|.=.
T Consensus 700 ~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~ 731 (974)
T KOG1166|consen 700 FCISKEIGEGSYGSVYVATHSNGKLVALKVEK 731 (974)
T ss_pred EEEEeeeccccceEEEEeecCCCcEEEEEeec
Confidence 44455799999999999999899999999763
No 253
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=90.28 E-value=0.44 Score=29.49 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=13.0
Q ss_pred CcceeEEEehhHHHHHHHHHHHHH
Q 043043 18 KKHFMAVVGSVLACSVLICILEIV 41 (154)
Q Consensus 18 ~~~~~~ii~~~v~~~vll~i~~~~ 41 (154)
.+.+..++|++++++++-++|++.
T Consensus 14 g~sW~~LVGVv~~al~~SlLIala 37 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIALA 37 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHH
Confidence 455556666666655544444433
No 254
>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]
Probab=90.24 E-value=0.46 Score=38.56 Aligned_cols=53 Identities=15% Similarity=0.165 Sum_probs=39.0
Q ss_pred hhcCccccceeecCCCcceEEEEeC-CCCEEEEEEecCC--CCCChHHHHHHHhhC
Q 043043 102 ATHNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETG--SGQGLPEFQTAIIVL 154 (154)
Q Consensus 102 at~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~--~~~~~~~f~~e~~~l 154 (154)
...++.....||+|.|+.|..+.-. .++.||+|.++.. +......+.+|+++|
T Consensus 54 ~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~im 109 (596)
T KOG0586|consen 54 SVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIM 109 (596)
T ss_pred cccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHH
Confidence 3455666778999999999998763 5789999998533 333345688888764
No 255
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=90.13 E-value=0.11 Score=33.38 Aligned_cols=32 Identities=13% Similarity=-0.096 Sum_probs=0.0
Q ss_pred EEEehhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 043043 23 AVVGSVLACSVLICILEIVLSFVLIWRKQKPD 54 (154)
Q Consensus 23 ~ii~~~v~~~vll~i~~~~~~~~~~~r~~~~~ 54 (154)
..|+..+.++++++.++..+++++|+||+++-
T Consensus 79 ~pi~~sal~v~lVl~llsg~lv~rrcrrr~~~ 110 (129)
T PF12191_consen 79 WPILGSALSVVLVLALLSGFLVWRRCRRREKF 110 (129)
T ss_dssp --------------------------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhhccccC
Confidence 33333333333333333334444444444443
No 256
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=90.05 E-value=0.23 Score=30.28 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 043043 31 CSVLICILEIVLSFVLIWRK 50 (154)
Q Consensus 31 ~~vll~i~~~~~~~~~~~r~ 50 (154)
++++++|+ +.+++|++.|.
T Consensus 50 G~iLilIi-i~Lv~CC~~K~ 68 (98)
T PF07204_consen 50 GLILILII-IALVCCCRAKH 68 (98)
T ss_pred hhhhHHHH-HHHHHHhhhhh
Confidence 33333333 44444444333
No 257
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=89.97 E-value=0.11 Score=43.64 Aligned_cols=31 Identities=42% Similarity=0.641 Sum_probs=25.7
Q ss_pred ccccceeecCCCcc-eEEEEeCCCCEEEEEEec
Q 043043 106 FDRKLVMGKGAFGN-VYRGTLRNSMKVAVKRGE 137 (154)
Q Consensus 106 f~~~~~iG~g~~g~-vy~g~l~~g~~vaVK~l~ 137 (154)
|..+.++|.|+.|+ ||+|.+ +|+.||||++-
T Consensus 511 ~~~~eilG~Gs~Gt~Vf~G~y-e~R~VAVKrll 542 (903)
T KOG1027|consen 511 FSPKEILGYGSNGTVVFRGVY-EGREVAVKRLL 542 (903)
T ss_pred eccHHHcccCCCCcEEEEEee-CCceehHHHHh
Confidence 56778899999865 589999 46899999993
No 258
>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]
Probab=89.47 E-value=0.46 Score=40.36 Aligned_cols=46 Identities=24% Similarity=0.445 Sum_probs=36.6
Q ss_pred ccHHHHHHhhcCccccceeecCCCcceEEEE-eCCCCEEEEEEecCC
Q 043043 94 IPYVEIKFATHNFDRKLVMGKGAFGNVYRGT-LRNSMKVAVKRGETG 139 (154)
Q Consensus 94 ~~~~~l~~at~~f~~~~~iG~g~~g~vy~g~-l~~g~~vaVK~l~~~ 139 (154)
..++.+...+..|....+||.|.+|-||++. ..+++.+|+|+++..
T Consensus 9 ~~~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~ 55 (953)
T KOG0587|consen 9 IDLSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPT 55 (953)
T ss_pred cchhhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCC
Confidence 3455566667778778899999999999986 467899999999654
No 259
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=89.24 E-value=0.03 Score=42.95 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=20.1
Q ss_pred CCCcceeEEEehhHHHHHHHHHHHHHHHHHHHHh
Q 043043 16 PKKKHFMAVVGSVLACSVLICILEIVLSFVLIWR 49 (154)
Q Consensus 16 ~~~~~~~~ii~~~v~~~vll~i~~~~~~~~~~~r 49 (154)
+.+....+|+++++.+++++++.+.++++.+|||
T Consensus 381 ~~~~~~~i~~avl~p~~il~~~~~~~~~~v~rrr 414 (436)
T PTZ00208 381 RHQRTAMIILAVLVPAIILAIIAVAFFIMVKRRR 414 (436)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhheeeeecc
Confidence 3444556677777877777755554544444443
No 260
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=89.11 E-value=0.34 Score=39.09 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=26.9
Q ss_pred ceeecCCCcceEEEEeCCCCEEEEEEecCC
Q 043043 110 LVMGKGAFGNVYRGTLRNSMKVAVKRGETG 139 (154)
Q Consensus 110 ~~iG~g~~g~vy~g~l~~g~~vaVK~l~~~ 139 (154)
+-|+..+.|.||+|++++|..||||.+.+.
T Consensus 131 ~PiAsASIaQVH~A~L~sG~~VAVKVqrPg 160 (517)
T COG0661 131 EPIASASIAQVHRAVLKSGEEVAVKVQRPG 160 (517)
T ss_pred CchhhhhHhhheeEEecCCCEEEEEecCCC
Confidence 458999999999999999999999999654
No 261
>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]
Probab=88.84 E-value=0.13 Score=40.16 Aligned_cols=45 Identities=24% Similarity=0.372 Sum_probs=32.4
Q ss_pred ceeecCCCcceEEEEe-CCCCEEEEEEecCCC---CCChHHHHHHHhhC
Q 043043 110 LVMGKGAFGNVYRGTL-RNSMKVAVKRGETGS---GQGLPEFQTAIIVL 154 (154)
Q Consensus 110 ~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~~---~~~~~~f~~e~~~l 154 (154)
..||+|.||.|-++.= ..|..||||.+.... .++.-...+|+++|
T Consensus 59 etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIM 107 (668)
T KOG0611|consen 59 ETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIM 107 (668)
T ss_pred HHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHH
Confidence 4599999999998865 568999999995332 22223456788775
No 262
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=88.79 E-value=0.86 Score=30.14 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=18.7
Q ss_pred eeEEEehhHHHHHHHHHHHHHHHHHHHHhc
Q 043043 21 FMAVVGSVLACSVLICILEIVLSFVLIWRK 50 (154)
Q Consensus 21 ~~~ii~~~v~~~vll~i~~~~~~~~~~~r~ 50 (154)
-..|.|+++|+++++.+++.++++++...+
T Consensus 60 gtAIaGIVfgiVfimgvva~i~icvCmc~k 89 (155)
T PF10873_consen 60 GTAIAGIVFGIVFIMGVVAGIAICVCMCMK 89 (155)
T ss_pred cceeeeeehhhHHHHHHHHHHHHHHhhhhh
Confidence 446777777777777766655555444433
No 263
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=88.37 E-value=0.68 Score=38.95 Aligned_cols=41 Identities=24% Similarity=0.524 Sum_probs=27.1
Q ss_pred eeecCCCcceEEEEeCCC-CEEEEEEecCCCCCChHHHHHHH
Q 043043 111 VMGKGAFGNVYRGTLRNS-MKVAVKRGETGSGQGLPEFQTAI 151 (154)
Q Consensus 111 ~iG~g~~g~vy~g~l~~g-~~vaVK~l~~~~~~~~~~f~~e~ 151 (154)
+||+|.||+||-|+=.+. ..+|||-+.........-...|+
T Consensus 582 VLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEI 623 (1226)
T KOG4279|consen 582 VLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEI 623 (1226)
T ss_pred EeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHH
Confidence 799999999999985443 46799988533222222344444
No 264
>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]
Probab=88.26 E-value=0.36 Score=35.31 Aligned_cols=48 Identities=21% Similarity=0.190 Sum_probs=34.6
Q ss_pred CccccceeecCCCcceEEEE-eCCCCEEEEEEecCCCCCChHHHHHHHh
Q 043043 105 NFDRKLVMGKGAFGNVYRGT-LRNSMKVAVKRGETGSGQGLPEFQTAII 152 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~-l~~g~~vaVK~l~~~~~~~~~~f~~e~~ 152 (154)
+|.-...||+|+|..||.+. +.++...|.|++-..+..+.+.-.+|++
T Consensus 22 Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid 70 (302)
T KOG2345|consen 22 RYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREID 70 (302)
T ss_pred eEEEeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHH
Confidence 34445779999999999886 5677889999996554444455566664
No 265
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=87.92 E-value=0.3 Score=28.87 Aligned_cols=33 Identities=21% Similarity=0.172 Sum_probs=20.0
Q ss_pred CcceeEEEehhHHHHHHHHHHHHHHHHHHHHhc
Q 043043 18 KKHFMAVVGSVLACSVLICILEIVLSFVLIWRK 50 (154)
Q Consensus 18 ~~~~~~ii~~~v~~~vll~i~~~~~~~~~~~r~ 50 (154)
+...++++|++++=+++-++++...++|-|.|+
T Consensus 30 ~ls~g~LaGiV~~D~vlTLLIv~~vy~car~r~ 62 (79)
T PF07213_consen 30 PLSPGLLAGIVAADAVLTLLIVLVVYYCARPRR 62 (79)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 445566777777766666666666655544333
No 266
>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=87.79 E-value=0.18 Score=40.71 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=35.7
Q ss_pred ceeecCCCcceEEEEeCCCCEEEEEEecC--CCCCChHHHHHHHhhC
Q 043043 110 LVMGKGAFGNVYRGTLRNSMKVAVKRGET--GSGQGLPEFQTAIIVL 154 (154)
Q Consensus 110 ~~iG~g~~g~vy~g~l~~g~~vaVK~l~~--~~~~~~~~f~~e~~~l 154 (154)
..||+|+...||+....+.+.+|.|+... ...+....|.+|+++|
T Consensus 367 k~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL 413 (677)
T KOG0596|consen 367 KQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALL 413 (677)
T ss_pred HhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHH
Confidence 46999999999999998888899888743 3444557799998764
No 267
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=87.72 E-value=0.6 Score=30.94 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhc
Q 043043 27 SVLACSVLICILEIVLSFVLIWRK 50 (154)
Q Consensus 27 ~~v~~~vll~i~~~~~~~~~~~r~ 50 (154)
++++++++++++++.+++|-+|+|
T Consensus 34 ILiaIvVliiiiivli~lcssRKk 57 (189)
T PF05568_consen 34 ILIAIVVLIIIIIVLIYLCSSRKK 57 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhH
Confidence 344444444444333344434433
No 268
>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]
Probab=87.66 E-value=0.53 Score=33.72 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=31.3
Q ss_pred ceeecCCCcceEEEEe-CCCCEEEEEEecCC-CCCChHHHHHHHhh
Q 043043 110 LVMGKGAFGNVYRGTL-RNSMKVAVKRGETG-SGQGLPEFQTAIIV 153 (154)
Q Consensus 110 ~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~-~~~~~~~f~~e~~~ 153 (154)
.-||+|++|.|-+-+. .+|+..|||++... +.+.+...+.|+.+
T Consensus 52 ~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi 97 (282)
T KOG0984|consen 52 EELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDI 97 (282)
T ss_pred hhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhh
Confidence 3499999999877554 68999999999532 34444556666643
No 269
>PHA03265 envelope glycoprotein D; Provisional
Probab=87.64 E-value=0.36 Score=36.60 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=20.6
Q ss_pred CCCCcceeEEEehhHHHHHHHHHH-HHHHHHHHHHhc
Q 043043 15 GPKKKHFMAVVGSVLACSVLICIL-EIVLSFVLIWRK 50 (154)
Q Consensus 15 ~~~~~~~~~ii~~~v~~~vll~i~-~~~~~~~~~~r~ 50 (154)
...+...+-.+|+++|..++-+++ ..++++|.|||+
T Consensus 340 ~~~s~~~~~~~g~~ig~~i~glv~vg~il~~~~rr~k 376 (402)
T PHA03265 340 PPTSKSNSTFVGISVGLGIAGLVLVGVILYVCLRRKK 376 (402)
T ss_pred CCCCCCCCcccceEEccchhhhhhhhHHHHHHhhhhh
Confidence 344555667788887766655544 455544444443
No 270
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=87.15 E-value=0.54 Score=32.73 Aligned_cols=13 Identities=15% Similarity=0.278 Sum_probs=5.0
Q ss_pred EEehhHHHHHHHH
Q 043043 24 VVGSVLACSVLIC 36 (154)
Q Consensus 24 ii~~~v~~~vll~ 36 (154)
.+++++.++++++
T Consensus 159 ~laI~lPvvv~~~ 171 (189)
T PF14610_consen 159 ALAIALPVVVVVL 171 (189)
T ss_pred eEEEEccHHHHHH
Confidence 3333333344333
No 271
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=86.89 E-value=2.7 Score=31.30 Aligned_cols=9 Identities=44% Similarity=0.072 Sum_probs=3.8
Q ss_pred CCcceeEEE
Q 043043 17 KKKHFMAVV 25 (154)
Q Consensus 17 ~~~~~~~ii 25 (154)
++..++.++
T Consensus 222 ~~l~~G~VV 230 (281)
T PF12768_consen 222 KKLSRGFVV 230 (281)
T ss_pred ccccceEEE
Confidence 444444333
No 272
>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional
Probab=86.75 E-value=2.5 Score=30.47 Aligned_cols=35 Identities=17% Similarity=0.077 Sum_probs=25.7
Q ss_pred cCccccce--eecCCCcceEEEEeC-CCCEEEEEEecC
Q 043043 104 HNFDRKLV--MGKGAFGNVYRGTLR-NSMKVAVKRGET 138 (154)
Q Consensus 104 ~~f~~~~~--iG~g~~g~vy~g~l~-~g~~vaVK~l~~ 138 (154)
+++...+. ||+|.||.||++.-. ++..+++|.+..
T Consensus 14 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~ 51 (267)
T PHA03390 14 KNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKA 51 (267)
T ss_pred HhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEeh
Confidence 34444444 599999999998864 567889998853
No 273
>PHA03210 serine/threonine kinase US3; Provisional
Probab=86.19 E-value=0.29 Score=39.15 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=18.8
Q ss_pred cCccccceeecCCCcceEEEEeC
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLR 126 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~ 126 (154)
..|.....||+|+||.||++...
T Consensus 148 ~~Y~ii~~LG~G~fG~Vyl~~~~ 170 (501)
T PHA03210 148 AHFRVIDDLPAGAFGKIFICALR 170 (501)
T ss_pred hccEEEeEecCCCCcceEEEEEe
Confidence 45666778999999999998764
No 274
>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]
Probab=86.07 E-value=0.56 Score=36.62 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=25.0
Q ss_pred ceeecCCCcceEEEEeCC-CCEEEEEEecC
Q 043043 110 LVMGKGAFGNVYRGTLRN-SMKVAVKRGET 138 (154)
Q Consensus 110 ~~iG~g~~g~vy~g~l~~-g~~vaVK~l~~ 138 (154)
..||.|..|+||.+.+.+ ++..|+|.++.
T Consensus 83 k~LG~GdiG~VyL~~l~~t~~~fAmKVmdK 112 (459)
T KOG0610|consen 83 KRLGCGDIGTVYLVELRGTNCLFAMKVMDK 112 (459)
T ss_pred HHcCCCCceeEEEEEecCCCceEEEEEecH
Confidence 569999999999999975 37899999964
No 275
>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]
Probab=85.67 E-value=1.6 Score=30.49 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=29.3
Q ss_pred ceeecCCCcceEEEEeCCCCEEEEEEecCCCCCChHHHHHHHhh
Q 043043 110 LVMGKGAFGNVYRGTLRNSMKVAVKRGETGSGQGLPEFQTAIIV 153 (154)
Q Consensus 110 ~~iG~g~~g~vy~g~l~~g~~vaVK~l~~~~~~~~~~f~~e~~~ 153 (154)
..|++|.++.||.|.+.+ ..+|+|.-...+ ....+..|+++
T Consensus 28 ~~L~KG~~s~Vyl~~~~~-~~~a~Kvrr~ds--~r~~l~kEaki 68 (201)
T COG2112 28 KELAKGTTSVVYLGEWRG-GEVALKVRRRDS--PRRNLEKEAKI 68 (201)
T ss_pred hhhhcccccEEEEeeccC-ceEEEEEecCCc--chhhHHHHHHH
Confidence 559999999999999965 478888764332 23456666654
No 276
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=85.58 E-value=0.13 Score=43.27 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=24.0
Q ss_pred ccHHHHHHhhcCccccceeecCCCcceEEEEeCC
Q 043043 94 IPYVEIKFATHNFDRKLVMGKGAFGNVYRGTLRN 127 (154)
Q Consensus 94 ~~~~~l~~at~~f~~~~~iG~g~~g~vy~g~l~~ 127 (154)
+--+|.+.+.. ....+.||+|+||+||.|.-++
T Consensus 985 yv~deWe~~r~-it~~relg~gsfg~Vy~g~~nn 1017 (1025)
T KOG4258|consen 985 YVPDEWEVSRE-ITLGRELGQGSFGMVYEGNANN 1017 (1025)
T ss_pred CChhHHHHHHH-HhhhhhhccCccceEEEecCCc
Confidence 33355555544 5666779999999999998754
No 277
>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]
Probab=85.28 E-value=0.17 Score=39.99 Aligned_cols=34 Identities=32% Similarity=0.492 Sum_probs=27.6
Q ss_pred cCccccceeecCCCcceEEEEeC-CCCEEEEEEec
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGE 137 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~ 137 (154)
+.|..-++||+|+||+||-.+.. .|...|.|+|+
T Consensus 185 n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~ 219 (591)
T KOG0986|consen 185 NTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLD 219 (591)
T ss_pred cceeeeEEEecccccceeEEEEecchhhHHHHHHH
Confidence 44777789999999999988775 46778888884
No 278
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=85.23 E-value=0.72 Score=35.31 Aligned_cols=31 Identities=32% Similarity=0.550 Sum_probs=25.0
Q ss_pred ccccceeecCCCcceEEEE-eCCCCEEEEEEe
Q 043043 106 FDRKLVMGKGAFGNVYRGT-LRNSMKVAVKRG 136 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~-l~~g~~vaVK~l 136 (154)
|.-...||+|.||..+.|. +=++.+||+|-=
T Consensus 30 yrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfE 61 (449)
T KOG1165|consen 30 YRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFE 61 (449)
T ss_pred ceeccccccCcceeeecccccccCceEEEEec
Confidence 4445779999999999986 446799999864
No 279
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=85.17 E-value=0.6 Score=39.23 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=10.7
Q ss_pred EehhHHHHHHHHHHHHHHHHHHHHh
Q 043043 25 VGSVLACSVLICILEIVLSFVLIWR 49 (154)
Q Consensus 25 i~~~v~~~vll~i~~~~~~~~~~~r 49 (154)
.+|+.+.++++++++++++|+||||
T Consensus 276 l~ILG~~~livl~lL~vLl~yCrrk 300 (807)
T PF10577_consen 276 LAILGGTALIVLILLCVLLCYCRRK 300 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3344334444444444444444443
No 280
>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]
Probab=84.84 E-value=1.6 Score=32.66 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=23.6
Q ss_pred eeecCCCcceEEEEeCC-CCEEEEEEec
Q 043043 111 VMGKGAFGNVYRGTLRN-SMKVAVKRGE 137 (154)
Q Consensus 111 ~iG~g~~g~vy~g~l~~-g~~vaVK~l~ 137 (154)
.||.|..|.|++..+.. |..+|||...
T Consensus 99 dlGsGtcG~V~k~~~rs~~~iiAVK~M~ 126 (391)
T KOG0983|consen 99 DLGSGTCGQVWKMRFRSTGHIIAVKQMR 126 (391)
T ss_pred hhcCCCccceEEEEEcccceEEEEEeec
Confidence 48999999999998864 7889999985
No 281
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=84.67 E-value=0.24 Score=40.41 Aligned_cols=31 Identities=39% Similarity=0.453 Sum_probs=25.9
Q ss_pred ccceeecCCCcceEEEEeCCCCEEEEEEecCC
Q 043043 108 RKLVMGKGAFGNVYRGTLRNSMKVAVKRGETG 139 (154)
Q Consensus 108 ~~~~iG~g~~g~vy~g~l~~g~~vaVK~l~~~ 139 (154)
+..-||.|.-|.||.|+|.+ ..||||++...
T Consensus 128 ELeWlGSGaQGAVF~Grl~n-etVAVKKV~el 158 (904)
T KOG4721|consen 128 ELEWLGSGAQGAVFLGRLHN-ETVAVKKVREL 158 (904)
T ss_pred hhhhhccCcccceeeeeccC-ceehhHHHhhh
Confidence 34669999999999999976 77999998543
No 282
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=84.19 E-value=0.2 Score=39.68 Aligned_cols=27 Identities=37% Similarity=0.609 Sum_probs=22.4
Q ss_pred ceeecCCCcceEEEE-eCCCCEEEEEEe
Q 043043 110 LVMGKGAFGNVYRGT-LRNSMKVAVKRG 136 (154)
Q Consensus 110 ~~iG~g~~g~vy~g~-l~~g~~vaVK~l 136 (154)
++||+|+|.+||++. +.+...||||.-
T Consensus 469 hLLGrGGFSEVyKAFDl~EqRYvAvKIH 496 (775)
T KOG1151|consen 469 HLLGRGGFSEVYKAFDLTEQRYVAVKIH 496 (775)
T ss_pred HHhccccHHHHHHhcccchhheeeEeee
Confidence 479999999999986 445578999976
No 283
>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]
Probab=84.08 E-value=0.06 Score=39.47 Aligned_cols=27 Identities=37% Similarity=0.712 Sum_probs=22.3
Q ss_pred ceeecCCCcceEEEEeCC-CCEEEEEEe
Q 043043 110 LVMGKGAFGNVYRGTLRN-SMKVAVKRG 136 (154)
Q Consensus 110 ~~iG~g~~g~vy~g~l~~-g~~vaVK~l 136 (154)
++||+|.||+||+++-.+ |..||+|+.
T Consensus 23 ~kigqGtfgeVFkAr~~n~~kkvalkkv 50 (376)
T KOG0669|consen 23 AKIGQGTFGEVFKARSKNTGKKVALKKV 50 (376)
T ss_pred HhcCCchHHHHHHHhhcCccchhHHHHH
Confidence 569999999999998754 567888876
No 284
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=83.89 E-value=0.33 Score=38.36 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=0.0
Q ss_pred ceeEEEehhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 043043 20 HFMAVVGSVLACSVLICILEIVLSFVLIWRKQKP 53 (154)
Q Consensus 20 ~~~~ii~~~v~~~vll~i~~~~~~~~~~~r~~~~ 53 (154)
...+++++++ +++++++++++++++++||+.+.
T Consensus 354 ~l~vVlgvav-livVv~viv~vc~~~rrrR~~~~ 386 (439)
T PF02480_consen 354 LLGVVLGVAV-LIVVVGVIVWVCLRCRRRRRQRD 386 (439)
T ss_dssp ----------------------------------
T ss_pred hHHHHHHHHH-HHHHHHHHhheeeeehhcccccc
Confidence 3444445444 44444444455555444444433
No 285
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=83.44 E-value=0.81 Score=29.66 Aligned_cols=28 Identities=25% Similarity=0.154 Sum_probs=13.4
Q ss_pred EehhHHHHHHHHHHHHHHHHHHHHhcCC
Q 043043 25 VGSVLACSVLICILEIVLSFVLIWRKQK 52 (154)
Q Consensus 25 i~~~v~~~vll~i~~~~~~~~~~~r~~~ 52 (154)
+.+++++.+++++.++.++++++-||++
T Consensus 103 ~~~il~il~~i~is~~~~~~yr~~r~~~ 130 (139)
T PHA03099 103 SPGIVLVLVGIIITCCLLSVYRFTRRTK 130 (139)
T ss_pred hhHHHHHHHHHHHHHHHHhhheeeeccc
Confidence 3444555555555554444444444443
No 286
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=82.03 E-value=1.3 Score=33.39 Aligned_cols=30 Identities=27% Similarity=0.295 Sum_probs=25.2
Q ss_pred ccceeecCCCcceEEEEeC-CCCEEEEEEec
Q 043043 108 RKLVMGKGAFGNVYRGTLR-NSMKVAVKRGE 137 (154)
Q Consensus 108 ~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~ 137 (154)
....||.|+||.|...+.+ +|...|.|.|+
T Consensus 48 ~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~ 78 (355)
T KOG0616|consen 48 RLKTLGTGSFGRVHLVREKHSGNYYAMKVLD 78 (355)
T ss_pred heeeeccCccceEEEEEEccCCceeehhhcC
Confidence 3467999999999998874 57889999995
No 287
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=81.76 E-value=0.86 Score=29.48 Aligned_cols=37 Identities=11% Similarity=-0.060 Sum_probs=15.6
Q ss_pred CcceeEEEehhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 043043 18 KKHFMAVVGSVLACSVLICILEIVLSFVLIWRKQKPDE 55 (154)
Q Consensus 18 ~~~~~~ii~~~v~~~vll~i~~~~~~~~~~~r~~~~~~ 55 (154)
....++++|+++|++. +++++++++.++|+|......
T Consensus 64 ~~i~~Ii~gv~aGvIg-~Illi~y~irR~~Kk~~~~~~ 100 (122)
T PF01102_consen 64 PAIIGIIFGVMAGVIG-IILLISYCIRRLRKKSSSDVQ 100 (122)
T ss_dssp TCHHHHHHHHHHHHHH-HHHHHHHHHHHHS--------
T ss_pred cceeehhHHHHHHHHH-HHHHHHHHHHHHhccCCCCCC
Confidence 4455555665555544 444555555666666654443
No 288
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=81.63 E-value=1.5 Score=29.19 Aligned_cols=23 Identities=17% Similarity=0.197 Sum_probs=12.0
Q ss_pred eEEEehhHHHHHHHHHHHHHHHH
Q 043043 22 MAVVGSVLACSVLICILEIVLSF 44 (154)
Q Consensus 22 ~~ii~~~v~~~vll~i~~~~~~~ 44 (154)
.+|+++.+.+++.+++++++++-
T Consensus 120 klilaisvtvv~~iliii~CLie 142 (154)
T PF14914_consen 120 KLILAISVTVVVMILIIIFCLIE 142 (154)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 45666655555555544444443
No 289
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=81.52 E-value=0.44 Score=41.66 Aligned_cols=56 Identities=21% Similarity=0.261 Sum_probs=37.0
Q ss_pred HHHHhhcCccccceeecCCCcceEEEEeCC-CCEEEEEEecCC--C-CCChHHHHHHHhh
Q 043043 98 EIKFATHNFDRKLVMGKGAFGNVYRGTLRN-SMKVAVKRGETG--S-GQGLPEFQTAIIV 153 (154)
Q Consensus 98 ~l~~at~~f~~~~~iG~g~~g~vy~g~l~~-g~~vaVK~l~~~--~-~~~~~~f~~e~~~ 153 (154)
++.-....|.-..+||+|+||+|...+..+ +...|.|+|+.+ . .....-|..|=++
T Consensus 69 ~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDi 128 (1317)
T KOG0612|consen 69 ELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDI 128 (1317)
T ss_pred HHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHH
Confidence 333334556667889999999999998864 567899999643 1 2222345555443
No 290
>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]
Probab=80.08 E-value=0.57 Score=34.92 Aligned_cols=46 Identities=26% Similarity=0.274 Sum_probs=31.0
Q ss_pred ccceeecCCCcceEEEEe-CCCCEEEEEEecC--CCCCChHHHHHHHhh
Q 043043 108 RKLVMGKGAFGNVYRGTL-RNSMKVAVKRGET--GSGQGLPEFQTAIIV 153 (154)
Q Consensus 108 ~~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~--~~~~~~~~f~~e~~~ 153 (154)
..+-||-|.||.||...- ++|..||.|++-. .+..+.+.|.+|+.+
T Consensus 57 PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~km 105 (449)
T KOG0664|consen 57 PDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKM 105 (449)
T ss_pred CCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHH
Confidence 346699999999997765 4788999998832 122233456666654
No 291
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=78.82 E-value=1.1 Score=36.19 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=28.0
Q ss_pred cCccccceeecCCCcceEEEEe-CCCCEEEEEEec
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTL-RNSMKVAVKRGE 137 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~ 137 (154)
..|.-...||+|.|.+||+++- ..+..+|||.|+
T Consensus 73 ~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~ 107 (604)
T KOG0592|consen 73 NDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLD 107 (604)
T ss_pred hhcchhheeccccceeEEEeeecCCCceeeHhhhh
Confidence 4566668899999999999875 356889999994
No 292
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=78.56 E-value=4.6 Score=28.72 Aligned_cols=36 Identities=17% Similarity=0.084 Sum_probs=20.2
Q ss_pred ccCCCCCcceeEEEehhHHHHHHHHHHHHHHHHHHHH
Q 043043 12 VVNGPKKKHFMAVVGSVLACSVLICILEIVLSFVLIW 48 (154)
Q Consensus 12 ~~~~~~~~~~~~ii~~~v~~~vll~i~~~~~~~~~~~ 48 (154)
......+...++++| ++++++++++++++-+|+...
T Consensus 32 ~~~d~~~I~iaiVAG-~~tVILVI~i~v~vR~CRq~~ 67 (221)
T PF08374_consen 32 RSKDYVKIMIAIVAG-IMTVILVIFIVVLVRYCRQSP 67 (221)
T ss_pred ccccceeeeeeeecc-hhhhHHHHHHHHHHHHHhhcc
Confidence 344455555555555 555566666666667666433
No 293
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=77.83 E-value=4 Score=23.86 Aligned_cols=29 Identities=28% Similarity=0.534 Sum_probs=17.2
Q ss_pred eEEEehhHHHHHHHHHHHHHHHHHHHHhc
Q 043043 22 MAVVGSVLACSVLICILEIVLSFVLIWRK 50 (154)
Q Consensus 22 ~~ii~~~v~~~vll~i~~~~~~~~~~~r~ 50 (154)
.-++++++..++++++++++...++.+++
T Consensus 29 ~~avaVviPl~L~LCiLvl~yai~~fkrk 57 (74)
T PF11857_consen 29 VNAVAVVIPLVLLLCILVLIYAIFQFKRK 57 (74)
T ss_pred eeEEEEeHHHHHHHHHHHHHHHhheeeec
Confidence 34555666677777766666555554444
No 294
>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=76.82 E-value=1.2 Score=39.72 Aligned_cols=35 Identities=34% Similarity=0.547 Sum_probs=28.3
Q ss_pred hcCccccceeecCCCcceEEEE-eCCCCEEEEEEec
Q 043043 103 THNFDRKLVMGKGAFGNVYRGT-LRNSMKVAVKRGE 137 (154)
Q Consensus 103 t~~f~~~~~iG~g~~g~vy~g~-l~~g~~vaVK~l~ 137 (154)
+-++...+.||.|.||.||-++ +++|...|+|-+.
T Consensus 1234 ~~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~ 1269 (1509)
T KOG4645|consen 1234 TFRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIK 1269 (1509)
T ss_pred eeeeccccccCCcceeeeEEeecCCccchhhhhhhh
Confidence 4556677889999999999876 5678889999773
No 295
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=76.26 E-value=3.7 Score=28.13 Aligned_cols=32 Identities=13% Similarity=-0.140 Sum_probs=13.7
Q ss_pred ceeEEEehhHHHHHHHHHHHHHHHHHHHHhcC
Q 043043 20 HFMAVVGSVLACSVLICILEIVLSFVLIWRKQ 51 (154)
Q Consensus 20 ~~~~ii~~~v~~~vll~i~~~~~~~~~~~r~~ 51 (154)
...+|.+|+.+++++|+-++.-++.|++||-.
T Consensus 113 ~~g~IaGIvsav~valvGAvsSyiaYqkKKlC 144 (169)
T PF12301_consen 113 EAGTIAGIVSAVVVALVGAVSSYIAYQKKKLC 144 (169)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 44455655533333333333333334444433
No 296
>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=75.81 E-value=0.95 Score=32.97 Aligned_cols=43 Identities=21% Similarity=0.380 Sum_probs=30.9
Q ss_pred cceeecCCCcceEEEE-eCCCCEEEEEEecCCCCCChHHHHHHHhhC
Q 043043 109 KLVMGKGAFGNVYRGT-LRNSMKVAVKRGETGSGQGLPEFQTAIIVL 154 (154)
Q Consensus 109 ~~~iG~g~~g~vy~g~-l~~g~~vaVK~l~~~~~~~~~~f~~e~~~l 154 (154)
.+.+|+|.+.+||.|. +.+...+.||.|.+-. .....+|+.+|
T Consensus 43 vrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVk---kkKIkREikIL 86 (338)
T KOG0668|consen 43 VRKVGRGKYSEVFEGINITNNEKCVIKILKPVK---KKKIKREIKIL 86 (338)
T ss_pred HHHHcCccHhhHhcccccCCCceEEEeeechHH---HHHHHHHHHHH
Confidence 4669999999999997 3566789999996432 23455666543
No 297
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=75.54 E-value=2.2 Score=26.34 Aligned_cols=26 Identities=15% Similarity=-0.041 Sum_probs=13.8
Q ss_pred cCCCCCcceeEEEehhHHHHHHHHHH
Q 043043 13 VNGPKKKHFMAVVGSVLACSVLICIL 38 (154)
Q Consensus 13 ~~~~~~~~~~~ii~~~v~~~vll~i~ 38 (154)
++.+.....++.+++++.+.+++.++
T Consensus 61 ~~ls~gaiagi~vg~~~~v~~lv~~l 86 (96)
T PTZ00382 61 SGLSTGAIAGISVAVVAVVGGLVGFL 86 (96)
T ss_pred CCcccccEEEEEeehhhHHHHHHHHH
Confidence 33444556666676665544444443
No 298
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=75.31 E-value=1.6 Score=33.39 Aligned_cols=35 Identities=31% Similarity=0.403 Sum_probs=27.2
Q ss_pred cCccccceeecCCCcceEEEEeC-CCCEEEEEEecC
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGET 138 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~ 138 (154)
++|+...+||+|.||.|....=+ .+...|+|.|..
T Consensus 168 ~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkK 203 (516)
T KOG0690|consen 168 EDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKK 203 (516)
T ss_pred chhhHHHHhcCCccceEEEEeecccCceeehhhhhh
Confidence 34666688999999999987643 568899999853
No 299
>PHA03286 envelope glycoprotein E; Provisional
Probab=75.29 E-value=3.6 Score=32.55 Aligned_cols=9 Identities=22% Similarity=0.294 Sum_probs=3.8
Q ss_pred EEEEeCCCC
Q 043043 121 YRGTLRNSM 129 (154)
Q Consensus 121 y~g~l~~g~ 129 (154)
|.+-+.+|.
T Consensus 474 ~~~~~~~~~ 482 (492)
T PHA03286 474 YHAWLADGG 482 (492)
T ss_pred hhhhhhcCC
Confidence 444444443
No 300
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=74.79 E-value=0.96 Score=33.26 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=0.0
Q ss_pred EehhHHHHHHHHHHHHHHHHHHHHhcC
Q 043043 25 VGSVLACSVLICILEIVLSFVLIWRKQ 51 (154)
Q Consensus 25 i~~~v~~~vll~i~~~~~~~~~~~r~~ 51 (154)
.-+++..++++++++.-++||+||||.
T Consensus 228 f~lLVPSiILVLLaVGGLLfYr~rrRs 254 (285)
T PF05337_consen 228 FYLLVPSIILVLLAVGGLLFYRRRRRS 254 (285)
T ss_dssp ---------------------------
T ss_pred ccccccchhhhhhhccceeeecccccc
Confidence 334555555555555555555555443
No 301
>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]
Probab=74.65 E-value=0.87 Score=37.83 Aligned_cols=36 Identities=25% Similarity=0.435 Sum_probs=27.1
Q ss_pred cCccccceeecCCCcceEEEEe-CCCCEEEEEEecCC
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTL-RNSMKVAVKRGETG 139 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~ 139 (154)
..|.....+|.|.+|.|||++= ..+...|||.++..
T Consensus 15 ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLe 51 (829)
T KOG0576|consen 15 DDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLE 51 (829)
T ss_pred cchhheeeecCCcccchhhhcccccCchhhheeeecc
Confidence 3344557799999999999874 45678889988543
No 302
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=73.94 E-value=2.3 Score=31.91 Aligned_cols=19 Identities=11% Similarity=0.296 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 043043 31 CSVLICILEIVLSFVLIWR 49 (154)
Q Consensus 31 ~~vll~i~~~~~~~~~~~r 49 (154)
++++++|+.+++.++|+++
T Consensus 268 IVLIMvIIYLILRYRRKKK 286 (299)
T PF02009_consen 268 IVLIMVIIYLILRYRRKKK 286 (299)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444333
No 303
>TIGR01495 ETRAMP Plasmodium ring stage membrane protein ETRAMP. These genes have been shown to be found in the sub-telomeric regions of both P. falciparum and P. yoelii chromosomes.
Probab=73.92 E-value=4.9 Score=24.24 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=16.4
Q ss_pred CcceeEEEehhHHHHHHHHHHHHHHHHHHHHhc
Q 043043 18 KKHFMAVVGSVLACSVLICILEIVLSFVLIWRK 50 (154)
Q Consensus 18 ~~~~~~ii~~~v~~~vll~i~~~~~~~~~~~r~ 50 (154)
+..+.++++.+++++++++..++.+.++..+++
T Consensus 47 knkK~i~iS~ias~la~lv~t~~G~g~y~~~kk 79 (85)
T TIGR01495 47 KNKKIILYSSIASGLALLVGAGVGLGYYYKKKN 79 (85)
T ss_pred hcCceeehHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 344555665555555444444445555444433
No 304
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=73.33 E-value=14 Score=25.10 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 043043 29 LACSVLICILEIVLSFVLIWRKQKPDE 55 (154)
Q Consensus 29 v~~~vll~i~~~~~~~~~~~r~~~~~~ 55 (154)
++.+++.+.++.+++++.||+.++...
T Consensus 154 IG~~VlA~~VA~L~~~F~RR~~rrspp 180 (215)
T PF05084_consen 154 IGAVVLAVSVAMLTWFFLRRTGRRSPP 180 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 334444444444444455555544443
No 305
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=73.31 E-value=1.1 Score=30.29 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=0.0
Q ss_pred ceeEEEehhHHHHHHHHHHHHHHHHHHHH
Q 043043 20 HFMAVVGSVLACSVLICILEIVLSFVLIW 48 (154)
Q Consensus 20 ~~~~ii~~~v~~~vll~i~~~~~~~~~~~ 48 (154)
....++++++|+++.+.+++.+++++.||
T Consensus 127 ~T~tLVGIIVGVLlaIG~igGIIivvvRK 155 (162)
T PF05808_consen 127 STVTLVGIIVGVLLAIGFIGGIIIVVVRK 155 (162)
T ss_dssp -----------------------------
T ss_pred ceeeeeeehhhHHHHHHHHhheeeEEeeh
Confidence 44567888888777776665555554444
No 306
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=72.22 E-value=8.7 Score=21.97 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC
Q 043043 32 SVLICILEIVLSFVLIWRKQKP 53 (154)
Q Consensus 32 ~vll~i~~~~~~~~~~~r~~~~ 53 (154)
++.+++++++++-.+.|++..+
T Consensus 9 ~ICVaii~lIlY~iYnr~~~~q 30 (68)
T PF05961_consen 9 IICVAIIGLILYGIYNRKKTTQ 30 (68)
T ss_pred HHHHHHHHHHHHHHHhcccccC
Confidence 3334444444444455544443
No 307
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=72.12 E-value=2.2 Score=33.73 Aligned_cols=33 Identities=30% Similarity=0.485 Sum_probs=25.6
Q ss_pred CccccceeecCCCcceEEEEeCC-CCEEEEEEec
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLRN-SMKVAVKRGE 137 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~~-g~~vaVK~l~ 137 (154)
.|.-..+||+|+||.|..+.-++ ....|||.|.
T Consensus 350 DFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLk 383 (683)
T KOG0696|consen 350 DFNFLMVLGKGSFGKVLLAERKGTDELYAIKILK 383 (683)
T ss_pred ccceEEEeccCccceeeeecccCcchhhhhhhhc
Confidence 35556889999999999887643 2568999884
No 308
>PLN03150 hypothetical protein; Provisional
Probab=71.91 E-value=5.2 Score=33.17 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=10.5
Q ss_pred eeEEEehhHHHHHHHHHHHHHHHHH
Q 043043 21 FMAVVGSVLACSVLICILEIVLSFV 45 (154)
Q Consensus 21 ~~~ii~~~v~~~vll~i~~~~~~~~ 45 (154)
...++++++++++++++++++++++
T Consensus 543 ~~~~i~~~~~~~~~~l~~~~~~~~~ 567 (623)
T PLN03150 543 VGAKIGIAFGVSVAFLFLVICAMCW 567 (623)
T ss_pred CceEEEEEhHHHHHHHHHHHHHhhh
Confidence 3445555544444333333333333
No 309
>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=71.64 E-value=4.8 Score=32.37 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=26.6
Q ss_pred cCccccceeecCCCcceEEEEe-CCCCEEEEEEec
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTL-RNSMKVAVKRGE 137 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~ 137 (154)
+.|.....||+|.||.|-++.- .++..+|+|.|.
T Consensus 97 Nqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~ 131 (576)
T KOG0585|consen 97 NQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILP 131 (576)
T ss_pred hheehhhhhcCCccceEEEEeecCCCcEEEEEeec
Confidence 3344555699999999998875 467899999994
No 310
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=71.00 E-value=3.8 Score=25.88 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCC
Q 043043 35 ICILEIVLSFVLIWRKQKPDE 55 (154)
Q Consensus 35 l~i~~~~~~~~~~~r~~~~~~ 55 (154)
++++.+++-+..+|.++++.+
T Consensus 10 lLll~l~asl~~wr~~~rq~k 30 (107)
T PF15330_consen 10 LLLLSLAASLLAWRMKQRQKK 30 (107)
T ss_pred HHHHHHHHHHHHHHHHhhhcc
Confidence 333333333445666677666
No 311
>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]
Probab=70.99 E-value=4.9 Score=32.75 Aligned_cols=30 Identities=30% Similarity=0.389 Sum_probs=26.5
Q ss_pred ceeecCCCcceEEEEeCCCCEEEEEEecCC
Q 043043 110 LVMGKGAFGNVYRGTLRNSMKVAVKRGETG 139 (154)
Q Consensus 110 ~~iG~g~~g~vy~g~l~~g~~vaVK~l~~~ 139 (154)
.-|+.-..|.||++++++|..||||.-.+.
T Consensus 167 ~piaaASlaQVhrA~L~~G~~VaVKVQ~P~ 196 (538)
T KOG1235|consen 167 EPIAAASLAQVHRARLKNGEDVAVKVQHPG 196 (538)
T ss_pred chhhhcchhheEEEEecCCCEEEEEecCcC
Confidence 458999999999999999999999998654
No 312
>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]
Probab=70.99 E-value=1.8 Score=32.98 Aligned_cols=30 Identities=27% Similarity=0.554 Sum_probs=22.5
Q ss_pred ceeecCCCcceEEEEeCCC-----CEEEEEEecCC
Q 043043 110 LVMGKGAFGNVYRGTLRNS-----MKVAVKRGETG 139 (154)
Q Consensus 110 ~~iG~g~~g~vy~g~l~~g-----~~vaVK~l~~~ 139 (154)
..||+|.||.||+++-.+. ...|+|+++..
T Consensus 30 g~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~ 64 (438)
T KOG0666|consen 30 GKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGE 64 (438)
T ss_pred ceecccccceeeEeeeccCCcccchhhHHHHHhcc
Confidence 4599999999999965322 26799998543
No 313
>PHA03283 envelope glycoprotein E; Provisional
Probab=69.14 E-value=5.8 Score=31.98 Aligned_cols=20 Identities=10% Similarity=0.356 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 043043 28 VLACSVLICILEIVLSFVLI 47 (154)
Q Consensus 28 ~v~~~vll~i~~~~~~~~~~ 47 (154)
++++++.++++++.++.|.+
T Consensus 405 ~~~~~~~~~~~~l~vw~c~~ 424 (542)
T PHA03283 405 AIICTCAALLVALVVWGCIL 424 (542)
T ss_pred HHHHHHHHHHHHHhhhheee
Confidence 34444444444444444433
No 314
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=69.13 E-value=10 Score=27.22 Aligned_cols=26 Identities=12% Similarity=0.149 Sum_probs=9.6
Q ss_pred EEEehhHHHHHHHHHHHHHHHHHHHH
Q 043043 23 AVVGSVLACSVLICILEIVLSFVLIW 48 (154)
Q Consensus 23 ~ii~~~v~~~vll~i~~~~~~~~~~~ 48 (154)
+|+-++++.+++.+.++.++.+++.+
T Consensus 189 vilpvvIaliVitl~vf~LvgLyr~C 214 (259)
T PF07010_consen 189 VILPVVIALIVITLSVFTLVGLYRMC 214 (259)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334443333333333333333333
No 315
>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]
Probab=67.70 E-value=4.5 Score=31.95 Aligned_cols=45 Identities=13% Similarity=0.097 Sum_probs=28.7
Q ss_pred cceeecCCCcceEEEEe-CCCCEEEEEEecCCC--CCChHHHHHHHhh
Q 043043 109 KLVMGKGAFGNVYRGTL-RNSMKVAVKRGETGS--GQGLPEFQTAIIV 153 (154)
Q Consensus 109 ~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~~--~~~~~~f~~e~~~ 153 (154)
.+++|+|.||.++...- .++..+++|.+.... ...++.=.+|+++
T Consensus 9 ~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~l 56 (426)
T KOG0589|consen 9 LRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDL 56 (426)
T ss_pred hhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHH
Confidence 36799999999986443 245789999886432 2223344556554
No 316
>PHA03049 IMV membrane protein; Provisional
Probab=66.24 E-value=14 Score=21.07 Aligned_cols=18 Identities=6% Similarity=0.126 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 043043 36 CILEIVLSFVLIWRKQKP 53 (154)
Q Consensus 36 ~i~~~~~~~~~~~r~~~~ 53 (154)
++++++++-.++|++..+
T Consensus 13 aIi~lIvYgiYnkk~~~q 30 (68)
T PHA03049 13 VIIGLIVYGIYNKKTTTS 30 (68)
T ss_pred HHHHHHHHHHHhcccccC
Confidence 333333333444444333
No 317
>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]
Probab=65.25 E-value=8.1 Score=29.04 Aligned_cols=45 Identities=16% Similarity=0.340 Sum_probs=31.2
Q ss_pred ccccceeecCCCcceEEEEeC-CCCEEEEEEecCCCCCChHHHHHHH
Q 043043 106 FDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGETGSGQGLPEFQTAI 151 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~~~~~~~~~f~~e~ 151 (154)
|+-...+|+|+||.+..+.-+ ..+.+++|-+... .....+|.+|-
T Consensus 26 y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p-~tt~~dF~rEf 71 (378)
T KOG1345|consen 26 YTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRP-QTTQADFVREF 71 (378)
T ss_pred hhHHHHhcccceeeEEeeeccCCceEEEeeccCcc-hhhHHHHHHHh
Confidence 344567999999999988775 4467888877432 22356788764
No 318
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=64.68 E-value=8.4 Score=24.98 Aligned_cols=31 Identities=16% Similarity=0.097 Sum_probs=13.5
Q ss_pred EEEehhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 043043 23 AVVGSVLACSVLICILEIVLSFVLIWRKQKP 53 (154)
Q Consensus 23 ~ii~~~v~~~vll~i~~~~~~~~~~~r~~~~ 53 (154)
.+..+++-++..++++++++-+.+-+|+..+
T Consensus 44 ~lYIL~vmgfFgff~~gImlsyvRSKK~E~s 74 (129)
T PF02060_consen 44 YLYILVVMGFFGFFTVGIMLSYVRSKKREHS 74 (129)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3333344444455555555555555554443
No 319
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=63.76 E-value=1.8 Score=28.86 Aligned_cols=15 Identities=20% Similarity=0.186 Sum_probs=6.2
Q ss_pred hhHHHHHHHHHHHHH
Q 043043 27 SVLACSVLICILEIV 41 (154)
Q Consensus 27 ~~v~~~vll~i~~~~ 41 (154)
+.+|+.++++++++.
T Consensus 12 i~igi~Ll~lLl~cg 26 (158)
T PF11770_consen 12 ISIGISLLLLLLLCG 26 (158)
T ss_pred HHHHHHHHHHHHHHh
Confidence 344444444433333
No 320
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=62.74 E-value=5.7 Score=27.28 Aligned_cols=24 Identities=8% Similarity=0.304 Sum_probs=13.3
Q ss_pred eEEEehhHHHHHHHHHHHH-HHHHH
Q 043043 22 MAVVGSVLACSVLICILEI-VLSFV 45 (154)
Q Consensus 22 ~~ii~~~v~~~vll~i~~~-~~~~~ 45 (154)
..++++++++++++++|++ +.+++
T Consensus 75 ~~~~~iivgvi~~Vi~Iv~~Iv~~~ 99 (179)
T PF13908_consen 75 YFITGIIVGVICGVIAIVVLIVCFC 99 (179)
T ss_pred cceeeeeeehhhHHHHHHHhHhhhe
Confidence 4566677776665554444 34445
No 321
>PF15069 FAM163: FAM163 family
Probab=61.85 E-value=8.7 Score=25.51 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 043043 28 VLACSVLICILEIVLSFVLIWR 49 (154)
Q Consensus 28 ~v~~~vll~i~~~~~~~~~~~r 49 (154)
+.|+++..+|+++++.+.+++|
T Consensus 8 ItGgILAtVILLcIIaVLCYCR 29 (143)
T PF15069_consen 8 ITGGILATVILLCIIAVLCYCR 29 (143)
T ss_pred EechHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444
No 322
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=61.38 E-value=7 Score=32.88 Aligned_cols=9 Identities=22% Similarity=0.290 Sum_probs=5.0
Q ss_pred ccHHHHHHh
Q 043043 94 IPYVEIKFA 102 (154)
Q Consensus 94 ~~~~~l~~a 102 (154)
|.|+||.+.
T Consensus 653 faYQeLCRq 661 (1004)
T KOG0793|consen 653 FAYQELCRQ 661 (1004)
T ss_pred HHHHHHHHH
Confidence 555665554
No 323
>PF14979 TMEM52: Transmembrane 52
Probab=61.14 E-value=5.3 Score=26.58 Aligned_cols=10 Identities=10% Similarity=0.418 Sum_probs=3.8
Q ss_pred HHHHHHHHhc
Q 043043 41 VLSFVLIWRK 50 (154)
Q Consensus 41 ~~~~~~~~r~ 50 (154)
++.||+.||+
T Consensus 41 C~rfCClrk~ 50 (154)
T PF14979_consen 41 CVRFCCLRKQ 50 (154)
T ss_pred HHHHHHhccc
Confidence 3333334333
No 324
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=60.74 E-value=1.3 Score=33.93 Aligned_cols=20 Identities=25% Similarity=0.230 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 043043 31 CSVLICILEIVLSFVLIWRK 50 (154)
Q Consensus 31 ~~vll~i~~~~~~~~~~~r~ 50 (154)
+-+++++++.+++|++|+|+
T Consensus 329 ~P~l~li~Ggl~v~~~r~r~ 348 (350)
T PF15065_consen 329 VPLLLLILGGLYVCLRRRRK 348 (350)
T ss_pred HHHHHHHHhhheEEEecccc
Confidence 33344444444444444433
No 325
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=60.17 E-value=18 Score=18.93 Aligned_cols=19 Identities=5% Similarity=0.258 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 043043 27 SVLACSVLICILEIVLSFV 45 (154)
Q Consensus 27 ~~v~~~vll~i~~~~~~~~ 45 (154)
+.+++.+++.++++..+++
T Consensus 5 ~lip~sl~l~~~~l~~f~W 23 (45)
T PF03597_consen 5 ILIPVSLILGLIALAAFLW 23 (45)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 326
>PF03988 DUF347: Repeat of Unknown Function (DUF347) ; InterPro: IPR007136 This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
Probab=59.98 E-value=25 Score=19.18 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 043043 27 SVLACSVLICILEIVLSFVLIWR 49 (154)
Q Consensus 27 ~~v~~~vll~i~~~~~~~~~~~r 49 (154)
-..+.++.+.++++.+...++.+
T Consensus 29 ~~~~~~~~~~~l~~~~~~~~~~~ 51 (55)
T PF03988_consen 29 YLISTLIFAALLAVVLALWYRSK 51 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444433333333333333
No 327
>PTZ00046 rifin; Provisional
Probab=59.72 E-value=12 Score=28.85 Aligned_cols=29 Identities=17% Similarity=0.332 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 043043 27 SVLACSVLICILEIVLSFVLIWRKQKPDE 55 (154)
Q Consensus 27 ~~v~~~vll~i~~~~~~~~~~~r~~~~~~ 55 (154)
++++++++++|++++++.+.--|-+|+.+
T Consensus 317 IiaSiiAIvVIVLIMvIIYLILRYRRKKK 345 (358)
T PTZ00046 317 IIASIVAIVVIVLIMVIIYLILRYRRKKK 345 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 44555555555555566666666666655
No 328
>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=59.60 E-value=5.3 Score=32.70 Aligned_cols=45 Identities=22% Similarity=0.238 Sum_probs=29.5
Q ss_pred cccceeecCCCcceEEE--EeCCCCEEEEEEecCC--CCCChHHHHHHHh
Q 043043 107 DRKLVMGKGAFGNVYRG--TLRNSMKVAVKRGETG--SGQGLPEFQTAII 152 (154)
Q Consensus 107 ~~~~~iG~g~~g~vy~g--~l~~g~~vaVK~l~~~--~~~~~~~f~~e~~ 152 (154)
+.+..||+|.|+.|-.+ ++ .|..||||.++.. .........+|+.
T Consensus 21 DLekTlG~GHFAVVKLArHVF-TGekVAVKviDKTKlD~~st~hlfqEVR 69 (864)
T KOG4717|consen 21 DLEKTLGRGHFAVVKLARHVF-TGEKVAVKVIDKTKLDTLSTGHLFQEVR 69 (864)
T ss_pred hhhhhhcCCceehhhhhhhhc-ccceeEEEEecccccchhhhhHHHHHHH
Confidence 33456999999988755 34 5789999999632 2223345566654
No 329
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=59.49 E-value=12 Score=28.76 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 043043 27 SVLACSVLICILEIVLSFVLIWRKQKPDE 55 (154)
Q Consensus 27 ~~v~~~vll~i~~~~~~~~~~~r~~~~~~ 55 (154)
++++++++++|++++++.+.--|-+|+.+
T Consensus 312 IiaSiIAIvvIVLIMvIIYLILRYRRKKK 340 (353)
T TIGR01477 312 IIASIIAILIIVLIMVIIYLILRYRRKKK 340 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 44555555555555555566666666654
No 330
>PF10389 CoatB: Bacteriophage coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 2IFO_A.
Probab=59.34 E-value=24 Score=18.61 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043043 29 LACSVLICILEIVLSFVLI 47 (154)
Q Consensus 29 v~~~vll~i~~~~~~~~~~ 47 (154)
++.+++.+++.+..+-+.|
T Consensus 25 ig~avL~v~V~i~v~kwiR 43 (46)
T PF10389_consen 25 IGGAVLGVIVGIAVYKWIR 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555444444444
No 331
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=59.07 E-value=7.2 Score=22.40 Aligned_cols=9 Identities=22% Similarity=0.350 Sum_probs=4.1
Q ss_pred eEEEehhHH
Q 043043 22 MAVVGSVLA 30 (154)
Q Consensus 22 ~~ii~~~v~ 30 (154)
|..|+++.+
T Consensus 33 W~aIGvi~g 41 (68)
T PF04971_consen 33 WAAIGVIGG 41 (68)
T ss_pred chhHHHHHH
Confidence 444554433
No 332
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=57.23 E-value=6.7 Score=28.17 Aligned_cols=31 Identities=3% Similarity=0.050 Sum_probs=12.7
Q ss_pred CCcceeEEEehhHHHHHHHHHHHHHHHHHHHH
Q 043043 17 KKKHFMAVVGSVLACSVLICILEIVLSFVLIW 48 (154)
Q Consensus 17 ~~~~~~~ii~~~v~~~vll~i~~~~~~~~~~~ 48 (154)
+.....++|++++..+.++++++ ++..|+++
T Consensus 187 S~vilpvvIaliVitl~vf~Lvg-Lyr~C~k~ 217 (259)
T PF07010_consen 187 SSVILPVVIALIVITLSVFTLVG-LYRMCWKT 217 (259)
T ss_pred cchhHHHHHHHHHHHHHHHHHHH-HHHHhhcC
Confidence 33445555544443333333333 33333333
No 333
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=56.96 E-value=28 Score=18.31 Aligned_cols=12 Identities=17% Similarity=0.498 Sum_probs=4.6
Q ss_pred hHHHHHHHHHHH
Q 043043 28 VLACSVLICILE 39 (154)
Q Consensus 28 ~v~~~vll~i~~ 39 (154)
+.|++++++++.
T Consensus 9 ilg~~ll~~Lig 20 (49)
T PF05624_consen 9 ILGALLLLLLIG 20 (49)
T ss_pred HHHHHHHHHHHH
Confidence 344333333333
No 334
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=56.87 E-value=3.7 Score=29.33 Aligned_cols=27 Identities=11% Similarity=0.180 Sum_probs=13.1
Q ss_pred cceeEEEehhHHHHHHHHHHHHHHHHH
Q 043043 19 KHFMAVVGSVLACSVLICILEIVLSFV 45 (154)
Q Consensus 19 ~~~~~ii~~~v~~~vll~i~~~~~~~~ 45 (154)
++.-.|+-++|++++||++++++.+|+
T Consensus 10 RK~N~iLNiaI~IV~lLIiiva~~lf~ 36 (217)
T PF07423_consen 10 RKTNKILNIAIGIVSLLIIIVAYQLFF 36 (217)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhee
Confidence 333445555555555554444444444
No 335
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=56.68 E-value=31 Score=24.81 Aligned_cols=28 Identities=11% Similarity=0.111 Sum_probs=23.0
Q ss_pred cceee-cCCCcceEEEEeCCCCEEEEEEec
Q 043043 109 KLVMG-KGAFGNVYRGTLRNSMKVAVKRGE 137 (154)
Q Consensus 109 ~~~iG-~g~~g~vy~g~l~~g~~vaVK~l~ 137 (154)
.++|| .|+.|++|..... +..+++|+..
T Consensus 36 ~~~lg~~~g~gtv~~v~~~-~~~~vlk~~~ 64 (239)
T PRK01723 36 ARVVGSAKGRGTTWFVQTP-GVNWVLRHYR 64 (239)
T ss_pred CceeecCCCCccEEEEEeC-CceEEEEEee
Confidence 46798 8999999999885 5778888774
No 336
>PF15050 SCIMP: SCIMP protein
Probab=56.44 E-value=6.9 Score=25.15 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHhcCCCCC
Q 043043 28 VLACSVLICILEIVLS-FVLIWRKQKPDE 55 (154)
Q Consensus 28 ~v~~~vll~i~~~~~~-~~~~~r~~~~~~ 55 (154)
++.+.+.+.+++.+++ +..|+.++....
T Consensus 16 II~vS~~lglIlyCvcR~~lRqGkkweia 44 (133)
T PF15050_consen 16 IILVSVVLGLILYCVCRWQLRQGKKWEIA 44 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccceec
Confidence 3444454544444444 445555544433
No 337
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=56.33 E-value=30 Score=18.62 Aligned_cols=12 Identities=8% Similarity=0.376 Sum_probs=4.7
Q ss_pred hHHHHHHHHHHH
Q 043043 28 VLACSVLICILE 39 (154)
Q Consensus 28 ~v~~~vll~i~~ 39 (154)
++++++++.+++
T Consensus 6 iV~i~iv~~lLg 17 (50)
T PF12606_consen 6 IVSIFIVMGLLG 17 (50)
T ss_pred HHHHHHHHHHHH
Confidence 344444333333
No 338
>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]
Probab=55.51 E-value=15 Score=27.50 Aligned_cols=27 Identities=33% Similarity=0.298 Sum_probs=24.6
Q ss_pred ceeecCCCcceEEEEeCCCCEEEEEEe
Q 043043 110 LVMGKGAFGNVYRGTLRNSMKVAVKRG 136 (154)
Q Consensus 110 ~~iG~g~~g~vy~g~l~~g~~vaVK~l 136 (154)
+.||-|.=+.||.|..++|..++||-=
T Consensus 97 ~~IGvGKEsdVY~~~~~~g~~~~vKfH 123 (304)
T COG0478 97 TKIGVGKESDVYVAIDPKGRKVAVKFH 123 (304)
T ss_pred cccccCccceEEEEECCCCCEEEEEEe
Confidence 679999999999999999999999854
No 339
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=54.99 E-value=28 Score=19.32 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=8.5
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 043043 27 SVLACSVLICILEIVLSFV 45 (154)
Q Consensus 27 ~~v~~~vll~i~~~~~~~~ 45 (154)
+.+++.++++.+++..+++
T Consensus 6 ~Lipvsi~l~~v~l~~flW 24 (58)
T COG3197 6 ILIPVSILLGAVGLGAFLW 24 (58)
T ss_pred eHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 340
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=54.96 E-value=8.3 Score=28.70 Aligned_cols=20 Identities=30% Similarity=0.620 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhcCCCCC
Q 043043 36 CILEIVLSFVLIWRKQKPDE 55 (154)
Q Consensus 36 ~i~~~~~~~~~~~r~~~~~~ 55 (154)
++++++++..+.|-.+|+..
T Consensus 269 lil~vvliiLYiWlyrrRK~ 288 (295)
T TIGR01478 269 IILTVVLIILYIWLYRRRKK 288 (295)
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 34445555667777776664
No 341
>PTZ00370 STEVOR; Provisional
Probab=54.88 E-value=8.3 Score=28.74 Aligned_cols=20 Identities=30% Similarity=0.610 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHhcCCCCC
Q 043043 36 CILEIVLSFVLIWRKQKPDE 55 (154)
Q Consensus 36 ~i~~~~~~~~~~~r~~~~~~ 55 (154)
++++++++..+.|-.+|+..
T Consensus 265 lil~vvliilYiwlyrrRK~ 284 (296)
T PTZ00370 265 LILAVVLIILYIWLYRRRKN 284 (296)
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 34445555667777766664
No 342
>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=54.33 E-value=16 Score=29.69 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=26.8
Q ss_pred ccccceeecCCCcceEEEE-eCCCCEEEEEEecCCC
Q 043043 106 FDRKLVMGKGAFGNVYRGT-LRNSMKVAVKRGETGS 140 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~-l~~g~~vaVK~l~~~~ 140 (154)
+.-.++||=|-|.+||.+- ..+.+.||+|......
T Consensus 80 Y~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAq 115 (590)
T KOG1290|consen 80 YHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQ 115 (590)
T ss_pred EEEEEeccccccceeEEEeeccCCeEEEEEEEehhh
Confidence 3445679999999999875 3566899999986543
No 343
>KOG4482 consensus Sarcoglycan complex, alpha/epsilon subunits [Function unknown]
Probab=53.95 E-value=15 Score=28.48 Aligned_cols=22 Identities=9% Similarity=0.055 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC
Q 043043 31 CSVLICILEIVLSFVLIWRKQK 52 (154)
Q Consensus 31 ~~vll~i~~~~~~~~~~~r~~~ 52 (154)
+++++++++..++||+|..+.+
T Consensus 307 Valll~~~La~imc~rrEg~~~ 328 (449)
T KOG4482|consen 307 VALLLVLALAYIMCCRREGQKK 328 (449)
T ss_pred HHHHHHHHHHHHHhhhhhcccc
Confidence 3333333333344444444333
No 344
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=53.77 E-value=17 Score=19.61 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 043043 28 VLACSVLICILEIVLSFV 45 (154)
Q Consensus 28 ~v~~~vll~i~~~~~~~~ 45 (154)
.+++.+++.+++++.+++
T Consensus 7 LIpiSl~l~~~~l~~f~W 24 (51)
T TIGR00847 7 LIPISLLLGGVGLVAFLW 24 (51)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 345
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=53.73 E-value=16 Score=27.68 Aligned_cols=14 Identities=36% Similarity=0.731 Sum_probs=7.6
Q ss_pred cCCCcceEE--EEeCCC
Q 043043 114 KGAFGNVYR--GTLRNS 128 (154)
Q Consensus 114 ~g~~g~vy~--g~l~~g 128 (154)
+|.| +||. |..+.|
T Consensus 298 eGDf-TVYECPGLAPTG 313 (341)
T PF06809_consen 298 EGDF-TVYECPGLAPTG 313 (341)
T ss_pred CCCe-eEEeCCCCCCCC
Confidence 3455 6885 444544
No 346
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=53.63 E-value=9.6 Score=31.31 Aligned_cols=20 Identities=20% Similarity=0.174 Sum_probs=8.0
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 043043 27 SVLACSVLICILEIVLSFVL 46 (154)
Q Consensus 27 ~~v~~~vll~i~~~~~~~~~ 46 (154)
+++++++++++++++.++++
T Consensus 5 ~ii~i~ii~i~~~~~~~~~r 24 (569)
T PRK04778 5 LIIAIVVIIIIAYLAGLILR 24 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333333333
No 347
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=53.52 E-value=11 Score=22.66 Aligned_cols=28 Identities=7% Similarity=0.165 Sum_probs=12.2
Q ss_pred CcceeEEEehhHHHHHHHHHHHHHHHHH
Q 043043 18 KKHFMAVVGSVLACSVLICILEIVLSFV 45 (154)
Q Consensus 18 ~~~~~~ii~~~v~~~vll~i~~~~~~~~ 45 (154)
+..+.++++.+++++++++..++.+.++
T Consensus 51 k~kK~iiiS~i~s~lalli~~~~G~g~y 78 (84)
T PF09716_consen 51 KNKKKIIISTIASGLALLIATALGYGYY 78 (84)
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555444444433333333333
No 348
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=51.67 E-value=2.4 Score=31.80 Aligned_cols=35 Identities=26% Similarity=0.154 Sum_probs=21.9
Q ss_pred CCCCcceeEEEehhHHHHHHHHHHHHHHHHHHHHhc
Q 043043 15 GPKKKHFMAVVGSVLACSVLICILEIVLSFVLIWRK 50 (154)
Q Consensus 15 ~~~~~~~~~ii~~~v~~~vll~i~~~~~~~~~~~r~ 50 (154)
........+++|+++++++++++++ .++.++|.++
T Consensus 267 D~~~~~vPIaVG~~La~lvlivLia-Yli~Rrr~~~ 301 (306)
T PF01299_consen 267 DDTSDLVPIAVGAALAGLVLIVLIA-YLIGRRRSRA 301 (306)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHh-heeEeccccc
Confidence 3336778888888776666655444 5555555554
No 349
>PRK01741 cell division protein ZipA; Provisional
Probab=50.83 E-value=15 Score=28.04 Aligned_cols=25 Identities=8% Similarity=-0.045 Sum_probs=13.4
Q ss_pred EehhHHHHHHHHHHHHHHHHHHHHh
Q 043043 25 VGSVLACSVLICILEIVLSFVLIWR 49 (154)
Q Consensus 25 i~~~v~~~vll~i~~~~~~~~~~~r 49 (154)
|-+++|+++++++++-.+|..||.|
T Consensus 6 iliILg~lal~~Lv~hgiWsnRrEK 30 (332)
T PRK01741 6 ILIILGILALVALVAHGIWSNRREK 30 (332)
T ss_pred hHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 3345555555555555555554444
No 350
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=50.79 E-value=15 Score=30.21 Aligned_cols=27 Identities=33% Similarity=0.441 Sum_probs=21.4
Q ss_pred eecCCCcceEEEEeC-CCCEEEEEEecC
Q 043043 112 MGKGAFGNVYRGTLR-NSMKVAVKRGET 138 (154)
Q Consensus 112 iG~g~~g~vy~g~l~-~g~~vaVK~l~~ 138 (154)
.|+|-|++|.++.=. .|..||||++..
T Consensus 440 ~GkGvFs~Vvra~D~~r~~~vAiKIIRn 467 (752)
T KOG0670|consen 440 TGKGVFSTVVRARDQARGQEVAIKIIRN 467 (752)
T ss_pred cccceeeeeeeccccCCCCeeEEEEeec
Confidence 688999999988642 467999999953
No 351
>PRK10345 hypothetical protein; Provisional
Probab=49.67 E-value=11 Score=26.73 Aligned_cols=19 Identities=16% Similarity=0.380 Sum_probs=15.5
Q ss_pred ccccceeecCCCcceEEEE
Q 043043 106 FDRKLVMGKGAFGNVYRGT 124 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~ 124 (154)
+++..+||+|++|.||...
T Consensus 4 L~~~~~LG~G~~~~Vy~hp 22 (210)
T PRK10345 4 LSEQSPLGTGRHRKCYAHP 22 (210)
T ss_pred cCCcceecCCCceEEEECC
Confidence 4556889999999999764
No 352
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=49.28 E-value=43 Score=20.12 Aligned_cols=8 Identities=0% Similarity=-0.425 Sum_probs=3.1
Q ss_pred EEehhHHH
Q 043043 24 VVGSVLAC 31 (154)
Q Consensus 24 ii~~~v~~ 31 (154)
++-+++++
T Consensus 16 ~yyiiA~g 23 (87)
T PF11980_consen 16 WYYIIAMG 23 (87)
T ss_pred eeHHHhhc
Confidence 33344333
No 353
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=48.65 E-value=48 Score=23.17 Aligned_cols=12 Identities=33% Similarity=0.523 Sum_probs=4.4
Q ss_pred hhHHHHHHHHHH
Q 043043 27 SVLACSVLICIL 38 (154)
Q Consensus 27 ~~v~~~vll~i~ 38 (154)
++++..++++++
T Consensus 15 lv~a~g~l~~vl 26 (186)
T PF07406_consen 15 LVIAYGSLVFVL 26 (186)
T ss_pred hhhHHHHHHHHH
Confidence 333333333333
No 354
>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]
Probab=48.35 E-value=22 Score=29.65 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=24.2
Q ss_pred ccccceeecCCCcceEEEEeCCC-CEEEEEEe
Q 043043 106 FDRKLVMGKGAFGNVYRGTLRNS-MKVAVKRG 136 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~~g-~~vaVK~l 136 (154)
|..-..+|.|+||.|..+..+.. -.|.+|.+
T Consensus 563 yttlq~lG~GAyGkV~lai~K~n~~eVViK~I 594 (772)
T KOG1152|consen 563 YTTLQPLGEGAYGKVNLAIHKENNYEVVIKMI 594 (772)
T ss_pred ceeeeeccccccceEEEeeecccceEEEeeeh
Confidence 33445699999999999998654 46888887
No 355
>PF15347 PAG: Phosphoprotein associated with glycosphingolipid-enriched
Probab=48.32 E-value=50 Score=25.78 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=7.3
Q ss_pred eEEEehhHHHHHHHHHH
Q 043043 22 MAVVGSVLACSVLICIL 38 (154)
Q Consensus 22 ~~ii~~~v~~~vll~i~ 38 (154)
.++++.++++..+++|.
T Consensus 15 ivlwgsLaav~~f~lis 31 (428)
T PF15347_consen 15 IVLWGSLAAVTTFLLIS 31 (428)
T ss_pred EEeehHHHHHHHHHHHH
Confidence 34444444444444333
No 356
>PHA03281 envelope glycoprotein E; Provisional
Probab=47.78 E-value=50 Score=27.15 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=7.3
Q ss_pred ceeecCCCcceEEE
Q 043043 110 LVMGKGAFGNVYRG 123 (154)
Q Consensus 110 ~~iG~g~~g~vy~g 123 (154)
|.||..+-|.-|..
T Consensus 622 ~~~~~~~~~~~~~~ 635 (642)
T PHA03281 622 NAIGAECGGSGYTV 635 (642)
T ss_pred cccccccCCcceEE
Confidence 55775554544443
No 357
>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=47.26 E-value=18 Score=30.43 Aligned_cols=34 Identities=21% Similarity=0.189 Sum_probs=26.9
Q ss_pred ccccceeecCCCcceEEEE-eCCCCEEEEEEecCC
Q 043043 106 FDRKLVMGKGAFGNVYRGT-LRNSMKVAVKRGETG 139 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~-l~~g~~vaVK~l~~~ 139 (154)
+.....||+|.-|.|-.|. ...|+.+|||.+..+
T Consensus 14 wkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~ 48 (786)
T KOG0588|consen 14 WKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKR 48 (786)
T ss_pred eeccccccCCCCceehhhhcccccceeEEEeeccc
Confidence 4445679999999999876 457899999999544
No 358
>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A.
Probab=46.15 E-value=40 Score=25.31 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=31.6
Q ss_pred ccccceeecCCCcceEEEEeCC-CCEEEEEEecCCC---CCChHHHHHHH
Q 043043 106 FDRKLVMGKGAFGNVYRGTLRN-SMKVAVKRGETGS---GQGLPEFQTAI 151 (154)
Q Consensus 106 f~~~~~iG~g~~g~vy~g~l~~-g~~vaVK~l~~~~---~~~~~~f~~e~ 151 (154)
+.....||.|+++.||.++-.+ +..+|||..-... ....+++.+|.
T Consensus 14 l~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~ 63 (288)
T PF14531_consen 14 LVRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQ 63 (288)
T ss_dssp EEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHH
T ss_pred EEEccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHH
Confidence 3445779999999999998754 7889999883221 22234555554
No 359
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=45.98 E-value=24 Score=31.34 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=14.5
Q ss_pred cceeEEEehhHHHHHHHHHHHHHHH
Q 043043 19 KHFMAVVGSVLACSVLICILEIVLS 43 (154)
Q Consensus 19 ~~~~~ii~~~v~~~vll~i~~~~~~ 43 (154)
...|+||..++++++++++++++++
T Consensus 976 vp~wiIi~svl~GLLlL~llv~~Lw 1000 (1030)
T KOG3637|consen 976 VPLWIIILSVLGGLLLLALLVLLLW 1000 (1030)
T ss_pred cceeeehHHHHHHHHHHHHHHHHHH
Confidence 4556666666665655555555554
No 360
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.74 E-value=34 Score=25.01 Aligned_cols=7 Identities=29% Similarity=0.302 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 043043 42 LSFVLIW 48 (154)
Q Consensus 42 ~~~~~~~ 48 (154)
+++++++
T Consensus 19 ~l~l~~r 25 (299)
T KOG3054|consen 19 LLFLWKR 25 (299)
T ss_pred HHHHHHh
Confidence 3333333
No 361
>PF13974 YebO: YebO-like protein
Probab=44.41 E-value=15 Score=21.88 Aligned_cols=15 Identities=7% Similarity=0.239 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHhc
Q 043043 36 CILEIVLSFVLIWRK 50 (154)
Q Consensus 36 ~i~~~~~~~~~~~r~ 50 (154)
++++++++|+..|-.
T Consensus 8 ~lv~livWFFVnRaS 22 (80)
T PF13974_consen 8 LLVGLIVWFFVNRAS 22 (80)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 362
>PF10812 DUF2561: Protein of unknown function (DUF2561); InterPro: IPR024381 This family of proteins with unknown function appears to be found predominantly in Mycobacterium spp.
Probab=44.37 E-value=46 Score=23.49 Aligned_cols=14 Identities=0% Similarity=-0.161 Sum_probs=7.1
Q ss_pred CCcceeEEEehhHH
Q 043043 17 KKKHFMAVVGSVLA 30 (154)
Q Consensus 17 ~~~~~~~ii~~~v~ 30 (154)
++...|++.++++.
T Consensus 59 ss~T~WvLY~VI~V 72 (207)
T PF10812_consen 59 SSGTPWVLYAVIGV 72 (207)
T ss_pred CCCCCEeehHHHHH
Confidence 33455666655433
No 363
>PF05083 LST1: LST-1 protein; InterPro: IPR007775 B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia []. A possible role in modulating immune responses. Induces morphological changes including production of filopodia and microspikes when overexpressed in a variety of cell types and may be involved in dendritic cell maturation. Isoform 1 and isoform 2 have an inhibitory effect on lymphocyte proliferation [, ]. ; GO: 0000902 cell morphogenesis, 0006955 immune response, 0016020 membrane
Probab=44.36 E-value=42 Score=19.38 Aligned_cols=8 Identities=25% Similarity=0.098 Sum_probs=3.0
Q ss_pred HHHHHhcC
Q 043043 44 FVLIWRKQ 51 (154)
Q Consensus 44 ~~~~~r~~ 51 (154)
|+..||.+
T Consensus 17 C~lsrRvk 24 (74)
T PF05083_consen 17 CRLSRRVK 24 (74)
T ss_pred HHHHhhhh
Confidence 33333333
No 364
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=43.38 E-value=30 Score=23.61 Aligned_cols=6 Identities=17% Similarity=0.362 Sum_probs=2.4
Q ss_pred HHHHhc
Q 043043 45 VLIWRK 50 (154)
Q Consensus 45 ~~~~r~ 50 (154)
++..|-
T Consensus 114 ir~~R~ 119 (163)
T PF06679_consen 114 IRTFRL 119 (163)
T ss_pred HHHHhh
Confidence 344433
No 365
>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2
Probab=43.33 E-value=36 Score=24.23 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=26.3
Q ss_pred cCccccceeecCCC-cceEEEEeCCCCEEEEEEe
Q 043043 104 HNFDRKLVMGKGAF-GNVYRGTLRNSMKVAVKRG 136 (154)
Q Consensus 104 ~~f~~~~~iG~g~~-g~vy~g~l~~g~~vaVK~l 136 (154)
..+.-...||.|.- |.||+.... |...|+|..
T Consensus 37 ~~I~flefLg~g~~~~~V~kv~I~-g~~YALKlf 69 (207)
T PF13095_consen 37 DDIEFLEFLGHGSHDGYVFKVEID-GRIYALKLF 69 (207)
T ss_pred CcEeeeeecCCCCceeEEEEEEEC-CeEEEEEEe
Confidence 44555677999999 999999995 579999993
No 366
>PF07253 Gypsy: Gypsy protein; InterPro: IPR009882 This family consists of several Gypsy/Env proteins from Drosophila and Ceratitis fruit fly species. Gypsy is an endogenous retrovirus of Drosophila melanogaster. Phylogenetic studies suggest that occasional horizontal transfer events of gypsy occur between Drosophila species. Gypsy possesses infective properties associated with the products of the envelope gene that might be at the origin of these interspecies transfers [].
Probab=42.49 E-value=24 Score=28.34 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcC
Q 043043 28 VLACSVLICILEIVLSFVLIWRKQ 51 (154)
Q Consensus 28 ~v~~~vll~i~~~~~~~~~~~r~~ 51 (154)
++|+++.+.+++++++++..|+++
T Consensus 421 ~~gv~l~~~Ii~~i~~~~~~r~~r 444 (472)
T PF07253_consen 421 VFGVLLSIMIIIIIALILMLRKKR 444 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444445555554444444443
No 367
>PF12216 m04gp34like: Immune evasion protein; InterPro: IPR022022 The proteins in this family are related to the m04 encoded protein gp34 of pathogenic microorganisms such as Murid herpesvirus 1. m06 and m152 genes are expressed earlier in the intracellular replication phases of these microorganism' life cycles. They function to inhibit MHC-1 loading and export. gp34 is theorized to prevent immune reactions from NK cells which would ordinarily recognise and attack cells lacking MHC.
Probab=42.29 E-value=35 Score=25.41 Aligned_cols=6 Identities=0% Similarity=0.147 Sum_probs=2.3
Q ss_pred EEEehh
Q 043043 23 AVVGSV 28 (154)
Q Consensus 23 ~ii~~~ 28 (154)
.+|+++
T Consensus 234 ~ai~v~ 239 (272)
T PF12216_consen 234 TAIVVI 239 (272)
T ss_pred EEEEee
Confidence 334333
No 368
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.74 E-value=67 Score=21.63 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=10.1
Q ss_pred eeEEEehhHHHHHHHHHHHHHHHH
Q 043043 21 FMAVVGSVLACSVLICILEIVLSF 44 (154)
Q Consensus 21 ~~~ii~~~v~~~vll~i~~~~~~~ 44 (154)
+++++.+++++++++++..+++++
T Consensus 4 k~~~~i~ii~viflai~~s~~~~~ 27 (161)
T COG5353 4 KHLIIIIIILVIFLAIILSIALFF 27 (161)
T ss_pred eEeeeehhHHHHHHHHHHHHHHHH
Confidence 344444444444444444333433
No 369
>KOG4818 consensus Lysosomal-associated membrane protein [General function prediction only]
Probab=41.12 E-value=31 Score=26.65 Aligned_cols=23 Identities=9% Similarity=0.199 Sum_probs=10.6
Q ss_pred eEEEehhHHHHHHHHHHHHHHHH
Q 043043 22 MAVVGSVLACSVLICILEIVLSF 44 (154)
Q Consensus 22 ~~ii~~~v~~~vll~i~~~~~~~ 44 (154)
.+++-+++|+++..++++++..+
T Consensus 326 siv~PivVg~~l~gl~~~vliay 348 (362)
T KOG4818|consen 326 NIVLPIAVGAILAGLVLVVLIAY 348 (362)
T ss_pred ceecchHHHHHHHHHHHHHHHHh
Confidence 34455555555544444333333
No 370
>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]
Probab=40.90 E-value=6.8 Score=32.32 Aligned_cols=45 Identities=27% Similarity=0.425 Sum_probs=28.1
Q ss_pred ceeecCCCcceEEEEeC-CCCEEEEE--EecC--CCCCChHHHHHHHhhC
Q 043043 110 LVMGKGAFGNVYRGTLR-NSMKVAVK--RGET--GSGQGLPEFQTAIIVL 154 (154)
Q Consensus 110 ~~iG~g~~g~vy~g~l~-~g~~vaVK--~l~~--~~~~~~~~f~~e~~~l 154 (154)
.+||+|.|=+||||.=. .|..||=- +++. .+......|..|+.+|
T Consensus 46 evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lL 95 (632)
T KOG0584|consen 46 EVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLL 95 (632)
T ss_pred hhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHH
Confidence 56999999999999753 35555421 1211 1222335688888765
No 371
>PF15298 AJAP1_PANP_C: AJAP1/PANP C-terminus
Probab=40.03 E-value=64 Score=22.79 Aligned_cols=11 Identities=0% Similarity=0.132 Sum_probs=5.0
Q ss_pred EEEehhHHHHH
Q 043043 23 AVVGSVLACSV 33 (154)
Q Consensus 23 ~ii~~~v~~~v 33 (154)
.+|.+.++.++
T Consensus 100 ~~iTITvSlIm 110 (205)
T PF15298_consen 100 QIITITVSLIM 110 (205)
T ss_pred EEEEEeeehhH
Confidence 45555444443
No 372
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=39.87 E-value=22 Score=22.06 Aligned_cols=8 Identities=25% Similarity=0.306 Sum_probs=3.8
Q ss_pred CCcceEEE
Q 043043 116 AFGNVYRG 123 (154)
Q Consensus 116 ~~g~vy~g 123 (154)
=+|+|-+-
T Consensus 56 i~G~V~~v 63 (97)
T COG1862 56 IVGTVTKV 63 (97)
T ss_pred eEEEEEEE
Confidence 34555543
No 373
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=39.62 E-value=52 Score=22.10 Aligned_cols=8 Identities=25% Similarity=0.434 Sum_probs=4.2
Q ss_pred cceEEEEe
Q 043043 118 GNVYRGTL 125 (154)
Q Consensus 118 g~vy~g~l 125 (154)
+.-|+..+
T Consensus 116 ~~yYrV~~ 123 (149)
T PF11694_consen 116 DKYYRVIF 123 (149)
T ss_pred CccEEEEE
Confidence 33456666
No 374
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=39.42 E-value=70 Score=19.22 Aligned_cols=27 Identities=11% Similarity=0.326 Sum_probs=14.0
Q ss_pred ceeEEEehhHHHHHHHHHHHHHHHHHH
Q 043043 20 HFMAVVGSVLACSVLICILEIVLSFVL 46 (154)
Q Consensus 20 ~~~~ii~~~v~~~vll~i~~~~~~~~~ 46 (154)
.-.++|+.-++.++.++++.+++.+.-
T Consensus 35 kysIVI~FWv~LA~FV~~lF~iL~~ms 61 (90)
T PF15183_consen 35 KYSIVIAFWVSLAAFVVFLFLILLYMS 61 (90)
T ss_pred ceeeehhHHHHHHHHHHHHHHHHHHHh
Confidence 445566666665555544444444443
No 375
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=38.94 E-value=47 Score=20.26 Aligned_cols=18 Identities=33% Similarity=0.174 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 043043 37 ILEIVLSFVLIWRKQKPD 54 (154)
Q Consensus 37 i~~~~~~~~~~~r~~~~~ 54 (154)
++++++.+..++-|++..
T Consensus 44 i~g~~~~~~~~k~K~~~~ 61 (95)
T PF07178_consen 44 ILGIVLWWGYRKFKKGRG 61 (95)
T ss_pred HHHHHHHHHHHHHHccCC
Confidence 333344444444444433
No 376
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=38.42 E-value=40 Score=22.52 Aligned_cols=30 Identities=23% Similarity=0.046 Sum_probs=15.2
Q ss_pred eeEEEehhHHHHHHHHHHHHHHHHHHHHhc
Q 043043 21 FMAVVGSVLACSVLICILEIVLSFVLIWRK 50 (154)
Q Consensus 21 ~~~ii~~~v~~~vll~i~~~~~~~~~~~r~ 50 (154)
.+++.++++...++..+++++.++....|.
T Consensus 64 aGIVfgiVfimgvva~i~icvCmc~kn~rg 93 (155)
T PF10873_consen 64 AGIVFGIVFIMGVVAGIAICVCMCMKNSRG 93 (155)
T ss_pred eeeehhhHHHHHHHHHHHHHHhhhhhcCCC
Confidence 344555555455555555555555544444
No 377
>PHA03273 envelope glycoprotein C; Provisional
Probab=37.77 E-value=8.1 Score=30.73 Aligned_cols=7 Identities=0% Similarity=0.226 Sum_probs=2.8
Q ss_pred EEehhHH
Q 043043 24 VVGSVLA 30 (154)
Q Consensus 24 ii~~~v~ 30 (154)
+++++.+
T Consensus 450 ivaV~~g 456 (486)
T PHA03273 450 IIAVTCG 456 (486)
T ss_pred ehHHHHH
Confidence 3344443
No 378
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=37.63 E-value=26 Score=27.29 Aligned_cols=7 Identities=0% Similarity=0.553 Sum_probs=2.6
Q ss_pred EEehhHH
Q 043043 24 VVGSVLA 30 (154)
Q Consensus 24 ii~~~v~ 30 (154)
+++.++|
T Consensus 343 vl~~llG 349 (377)
T PRK10381 343 ILAALIG 349 (377)
T ss_pred HHHHHHH
Confidence 3333333
No 379
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=37.17 E-value=55 Score=18.73 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=9.2
Q ss_pred EehhHHHHHHHHHHHHHHHH
Q 043043 25 VGSVLACSVLICILEIVLSF 44 (154)
Q Consensus 25 i~~~v~~~vll~i~~~~~~~ 44 (154)
.|.++++++++.+++++-++
T Consensus 14 ~G~LIAvvLLLsIl~~lt~~ 33 (66)
T PF13179_consen 14 TGMLIAVVLLLSILAFLTYW 33 (66)
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 380
>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]
Probab=36.96 E-value=10 Score=29.53 Aligned_cols=36 Identities=28% Similarity=0.375 Sum_probs=26.5
Q ss_pred hcCccccceeecCCCcceEEEEeC-CCCEEEEEEecC
Q 043043 103 THNFDRKLVMGKGAFGNVYRGTLR-NSMKVAVKRGET 138 (154)
Q Consensus 103 t~~f~~~~~iG~g~~g~vy~g~l~-~g~~vaVK~l~~ 138 (154)
++.+.-..++|+|.||.|....-. .+..||+|.+..
T Consensus 88 ~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~ 124 (415)
T KOG0671|consen 88 TNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKN 124 (415)
T ss_pred ccceehhhhhcCCcccceEEEeecCCCceehHHHHHH
Confidence 344555567999999999877543 368899998854
No 381
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=36.88 E-value=31 Score=31.13 Aligned_cols=47 Identities=21% Similarity=0.172 Sum_probs=34.8
Q ss_pred CccccceeecCCCcceEEEEeCCCCEEEEEEec-CCCCCChHHHHHHHh
Q 043043 105 NFDRKLVMGKGAFGNVYRGTLRNSMKVAVKRGE-TGSGQGLPEFQTAII 152 (154)
Q Consensus 105 ~f~~~~~iG~g~~g~vy~g~l~~g~~vaVK~l~-~~~~~~~~~f~~e~~ 152 (154)
++.....||+++|=.|.++.-++|. |.||.+- .......+.|.++++
T Consensus 24 e~~~~~~LGstRFlKv~r~k~~eG~-vVvKVFvk~~p~~sL~~~~qrL~ 71 (1431)
T KOG1240|consen 24 ECHYVENLGSTRFLKVARAKDREGL-VVVKVFVKQDPTISLRPFKQRLE 71 (1431)
T ss_pred ceeeecccCchhhhhhhhccCCCce-EEEEEEeccCCCCCchHHHHHHH
Confidence 3455567999999999999998887 8888883 334555667776653
No 382
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=36.50 E-value=32 Score=28.99 Aligned_cols=6 Identities=50% Similarity=0.977 Sum_probs=2.7
Q ss_pred CCcccc
Q 043043 60 MDWSLL 65 (154)
Q Consensus 60 ~~~~~~ 65 (154)
..|..+
T Consensus 870 m~WDDS 875 (952)
T KOG1834|consen 870 MDWDDS 875 (952)
T ss_pred CCcccc
Confidence 445433
No 383
>PF15234 LAT: Linker for activation of T-cells
Probab=35.90 E-value=57 Score=22.81 Aligned_cols=9 Identities=33% Similarity=0.342 Sum_probs=4.9
Q ss_pred EEEEeCCCC
Q 043043 121 YRGTLRNSM 129 (154)
Q Consensus 121 y~g~l~~g~ 129 (154)
|..+++++.
T Consensus 132 Yl~VLPD~~ 140 (230)
T PF15234_consen 132 YLVVLPDST 140 (230)
T ss_pred eEEECCCCC
Confidence 555665543
No 384
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=35.76 E-value=24 Score=23.75 Aligned_cols=28 Identities=14% Similarity=0.111 Sum_probs=16.4
Q ss_pred eeecCCCcceEEEEe-CCCCEEEEEEecC
Q 043043 111 VMGKGAFGNVYRGTL-RNSMKVAVKRGET 138 (154)
Q Consensus 111 ~iG~g~~g~vy~g~l-~~g~~vaVK~l~~ 138 (154)
+|...+.|.|..+.. ++++.+=.|-+..
T Consensus 104 lLD~~~nGvVltsI~~Re~s~~YaK~I~~ 132 (151)
T PF14584_consen 104 LLDDNNNGVVLTSIHSREESRTYAKPIVN 132 (151)
T ss_pred EEeCCCCEEEEEeeecCCCcEEEEEEecC
Confidence 345555666666655 3556666666643
No 385
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=35.60 E-value=19 Score=27.19 Aligned_cols=40 Identities=13% Similarity=0.236 Sum_probs=27.7
Q ss_pred eeecCCCcceEEEEeCCCCEEEEEEec--CCCCCChHHHHHHH
Q 043043 111 VMGKGAFGNVYRGTLRNSMKVAVKRGE--TGSGQGLPEFQTAI 151 (154)
Q Consensus 111 ~iG~g~~g~vy~g~l~~g~~vaVK~l~--~~~~~~~~~f~~e~ 151 (154)
+|.+.-.|+.|+|.+. |..+.+|.|. ..+....++|..|.
T Consensus 197 kl~e~hsgelwrgrwq-gndivakil~vr~~t~risrdfneef 238 (448)
T KOG0195|consen 197 KLAESHSGELWRGRWQ-GNDIVAKILNVREVTARISRDFNEEF 238 (448)
T ss_pred hhccCCCccccccccc-CcchhhhhhhhhhcchhhcchhhhhC
Confidence 4777888999999995 4556677774 33444456787765
No 386
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=35.60 E-value=11 Score=29.15 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=26.9
Q ss_pred cCccccceeecCCCcceEEEEeCC-CCEEEEEEec
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTLRN-SMKVAVKRGE 137 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l~~-g~~vaVK~l~ 137 (154)
+.|+...+||+|.|+.|....+.. .+..|+|.+.
T Consensus 250 ~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvk 284 (593)
T KOG0695|consen 250 QDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVK 284 (593)
T ss_pred ccceeeeeecCcchhhhhheehcccceeeehhhHH
Confidence 456677899999999999988854 4678888874
No 387
>COG3115 ZipA Cell division protein [Cell division and chromosome partitioning]
Probab=35.36 E-value=32 Score=25.91 Aligned_cols=16 Identities=19% Similarity=0.275 Sum_probs=6.7
Q ss_pred hhHHHHHHHHHHHHHH
Q 043043 27 SVLACSVLICILEIVL 42 (154)
Q Consensus 27 ~~v~~~vll~i~~~~~ 42 (154)
+++|+++++.+++-.+
T Consensus 9 IIvG~IAIiaLLvhGl 24 (324)
T COG3115 9 IIVGAIAIIALLVHGL 24 (324)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3444444444433333
No 388
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=35.28 E-value=13 Score=27.95 Aligned_cols=30 Identities=10% Similarity=-0.113 Sum_probs=0.0
Q ss_pred EEEehhHHHHHHHHHHHHHHHHHHHHhcCC
Q 043043 23 AVVGSVLACSVLICILEIVLSFVLIWRKQK 52 (154)
Q Consensus 23 ~ii~~~v~~~vll~i~~~~~~~~~~~r~~~ 52 (154)
+++.++++.++++++++++++..+|..|..
T Consensus 150 IpaVVI~~iLLIA~iIa~icyrrkR~GK~~ 179 (290)
T PF05454_consen 150 IPAVVIAAILLIAGIIACICYRRKRKGKMS 179 (290)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccccc
Confidence 445556667777888888888888777765
No 389
>PRK01658 holin-like protein; Validated
Probab=35.21 E-value=33 Score=22.17 Aligned_cols=11 Identities=9% Similarity=0.250 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 043043 29 LACSVLICILE 39 (154)
Q Consensus 29 v~~~vll~i~~ 39 (154)
++.++.+++.+
T Consensus 97 vsT~l~l~vtg 107 (122)
T PRK01658 97 ISTFVVMIVTG 107 (122)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 390
>PF10265 DUF2217: Uncharacterized conserved protein (DUF2217); InterPro: IPR019392 This is a family of conserved proteins varying in length from 500-600 residues. Their function is not known.
Probab=34.80 E-value=39 Score=27.52 Aligned_cols=15 Identities=0% Similarity=-0.071 Sum_probs=6.4
Q ss_pred cceeEEEehhHHHHH
Q 043043 19 KHFMAVVGSVLACSV 33 (154)
Q Consensus 19 ~~~~~ii~~~v~~~v 33 (154)
..+.++++..+|+++
T Consensus 13 ~~Kkvl~atA~g~v~ 27 (514)
T PF10265_consen 13 GLKKVLFATAVGVVS 27 (514)
T ss_pred cceeeeehhHHHHHH
Confidence 344444444444333
No 391
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=34.57 E-value=17 Score=22.85 Aligned_cols=9 Identities=33% Similarity=0.641 Sum_probs=4.3
Q ss_pred cCCCcceEE
Q 043043 114 KGAFGNVYR 122 (154)
Q Consensus 114 ~g~~g~vy~ 122 (154)
.|=+|+|-.
T Consensus 63 gGi~G~Vv~ 71 (106)
T PRK05585 63 GGIIGKVTK 71 (106)
T ss_pred CCeEEEEEE
Confidence 344565543
No 392
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=34.06 E-value=13 Score=22.26 Aligned_cols=6 Identities=33% Similarity=0.490 Sum_probs=2.9
Q ss_pred CCcceE
Q 043043 116 AFGNVY 121 (154)
Q Consensus 116 ~~g~vy 121 (154)
=+|+|-
T Consensus 50 i~G~V~ 55 (84)
T TIGR00739 50 IIGTVT 55 (84)
T ss_pred eEEEEE
Confidence 345544
No 393
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=33.19 E-value=88 Score=20.08 Aligned_cols=38 Identities=13% Similarity=0.043 Sum_probs=20.1
Q ss_pred cCCCCCcceeEEEehhHHHHHHHHHHHHHH-HHHHHHhc
Q 043043 13 VNGPKKKHFMAVVGSVLACSVLICILEIVL-SFVLIWRK 50 (154)
Q Consensus 13 ~~~~~~~~~~~ii~~~v~~~vll~i~~~~~-~~~~~~r~ 50 (154)
+..+......++||.+....+..+-+..++ .+|+|.-+
T Consensus 78 ps~p~d~aLp~VIGGLcaL~LaamGA~~LLrR~cRr~ar 116 (126)
T PF03229_consen 78 PSPPVDFALPLVIGGLCALTLAAMGAGALLRRCCRRAAR 116 (126)
T ss_pred CCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445677888887765555444443333 34444333
No 394
>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=33.17 E-value=1 Score=33.09 Aligned_cols=43 Identities=26% Similarity=0.296 Sum_probs=28.4
Q ss_pred ceeecCCCcceEEEEe-CCCCEEEEEEecCC--CCCChHHHHHHHh
Q 043043 110 LVMGKGAFGNVYRGTL-RNSMKVAVKRGETG--SGQGLPEFQTAII 152 (154)
Q Consensus 110 ~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~--~~~~~~~f~~e~~ 152 (154)
.+||+|.|..||+..- +.|+..|+|.++.. +..+..+..+|+.
T Consensus 17 e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEar 62 (355)
T KOG0033|consen 17 EELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREAR 62 (355)
T ss_pred HHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHH
Confidence 5699999999997653 56777888777432 2223345556654
No 395
>PRK12274 serine/threonine protein kinase; Provisional
Probab=33.05 E-value=55 Score=23.52 Aligned_cols=19 Identities=11% Similarity=0.060 Sum_probs=14.8
Q ss_pred cccceeecCCCcceEEEEe
Q 043043 107 DRKLVMGKGAFGNVYRGTL 125 (154)
Q Consensus 107 ~~~~~iG~g~~g~vy~g~l 125 (154)
.....|+++.||+||...-
T Consensus 5 ~~~~~l~~~~f~~v~~~~~ 23 (218)
T PRK12274 5 AVNEPLKSDTFGRILLVRG 23 (218)
T ss_pred ccceeecCCCcceEEEeec
Confidence 4457799999999995544
No 396
>PF09919 DUF2149: Uncharacterized conserved protein (DUF2149); InterPro: IPR018676 This family of conserved hypothetical proteins has no known function.
Probab=32.58 E-value=38 Score=20.71 Aligned_cols=19 Identities=37% Similarity=0.781 Sum_probs=14.4
Q ss_pred ecC-CCcceEEEEeCCCCEEEE
Q 043043 113 GKG-AFGNVYRGTLRNSMKVAV 133 (154)
Q Consensus 113 G~g-~~g~vy~g~l~~g~~vaV 133 (154)
|+| ..|++|+ +++|..+-|
T Consensus 71 G~G~~~G~aYr--l~~Gk~I~V 90 (92)
T PF09919_consen 71 GSGERLGTAYR--LKDGKLIYV 90 (92)
T ss_pred CCCeECeEEEE--cCCceEEEe
Confidence 555 5699999 888887765
No 397
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=32.26 E-value=34 Score=25.34 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=9.0
Q ss_pred EehhHHHHHHHHHHHHHHHH
Q 043043 25 VGSVLACSVLICILEIVLSF 44 (154)
Q Consensus 25 i~~~v~~~vll~i~~~~~~~ 44 (154)
++..+|.+++++|+++.+..
T Consensus 73 v~~~~G~~~v~liLgl~ig~ 92 (279)
T PF07271_consen 73 VGGSAGLLAVALILGLAIGI 92 (279)
T ss_pred ccchhhHHHHHHHHHHhhcc
Confidence 34444544444444444333
No 398
>TIGR02205 septum_zipA cell division protein ZipA. This model represents the full length of bacterial cell division protein ZipA. The N-terminal hydrophobic stretch is an uncleaved signal-anchor sequence. This is followed by an unconserved, variable length, low complexity region, and then a conserved C-terminal region of about 140 amino acids (see pfam04354) that interacts with the tubulin-like cell division protein FtsZ.
Probab=31.99 E-value=21 Score=26.71 Aligned_cols=6 Identities=0% Similarity=0.130 Sum_probs=2.3
Q ss_pred hHHHHH
Q 043043 28 VLACSV 33 (154)
Q Consensus 28 ~v~~~v 33 (154)
++|+++
T Consensus 8 IvGaia 13 (284)
T TIGR02205 8 IVGILA 13 (284)
T ss_pred HHHHHH
Confidence 344333
No 399
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=31.46 E-value=87 Score=26.36 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=19.7
Q ss_pred eEEEehhHHHHH-HHHHHHHHHHHHHHHhcCCCCCC
Q 043043 22 MAVVGSVLACSV-LICILEIVLSFVLIWRKQKPDEF 56 (154)
Q Consensus 22 ~~ii~~~v~~~v-ll~i~~~~~~~~~~~r~~~~~~~ 56 (154)
.-++ +++|+++ +++++++++++++..+++.+.++
T Consensus 267 ~NlW-II~gVlvPv~vV~~Iiiil~~~LCRk~K~eF 301 (684)
T PF12877_consen 267 NNLW-IIAGVLVPVLVVLLIIIILYWKLCRKNKLEF 301 (684)
T ss_pred CCeE-EEehHhHHHHHHHHHHHHHHHHHhcccccCC
Confidence 3444 4455544 44555566666677777777653
No 400
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=31.10 E-value=50 Score=25.66 Aligned_cols=11 Identities=9% Similarity=0.259 Sum_probs=5.1
Q ss_pred hHHHHHHHHHH
Q 043043 28 VLACSVLICIL 38 (154)
Q Consensus 28 ~v~~~vll~i~ 38 (154)
.++.+++++.+
T Consensus 306 ~~vli~vl~~~ 316 (361)
T PF12259_consen 306 AIVLIIVLISL 316 (361)
T ss_pred HHHHHHHHHHH
Confidence 44455554333
No 401
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=31.09 E-value=16 Score=27.37 Aligned_cols=7 Identities=0% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHH
Q 043043 41 VLSFVLI 47 (154)
Q Consensus 41 ~~~~~~~ 47 (154)
+++.++|
T Consensus 68 IImlF~R 74 (381)
T PF05297_consen 68 IIMLFKR 74 (381)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 3333333
No 402
>PRK03427 cell division protein ZipA; Provisional
Probab=31.09 E-value=33 Score=26.28 Aligned_cols=13 Identities=15% Similarity=0.376 Sum_probs=5.6
Q ss_pred hhHHHHHHHHHHH
Q 043043 27 SVLACSVLICILE 39 (154)
Q Consensus 27 ~~v~~~vll~i~~ 39 (154)
+++|+++++.+++
T Consensus 10 ivvGAIAIiAlL~ 22 (333)
T PRK03427 10 IIVGAIAIIALLV 22 (333)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 403
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=31.04 E-value=1e+02 Score=25.76 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=13.6
Q ss_pred CCcceeEEEehhHHHHHHHHHHHHHHHH
Q 043043 17 KKKHFMAVVGSVLACSVLICILEIVLSF 44 (154)
Q Consensus 17 ~~~~~~~ii~~~v~~~vll~i~~~~~~~ 44 (154)
.+.++.++|+.+.+++++++|+...+-.
T Consensus 19 ~~~r~ri~~~~~~~~~~~~~i~~~~~a~ 46 (596)
T PLN02745 19 QKFRKRIIIGAVSALVVVAAVAGGVFAY 46 (596)
T ss_pred HhhhheEEEeehHHHHHHHHHHHHHHHH
Confidence 3445555565554444444444444333
No 404
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.34 E-value=37 Score=24.86 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=17.8
Q ss_pred EEehhHHHHHHHHHHHHHHHHHHHHhc
Q 043043 24 VVGSVLACSVLICILEIVLSFVLIWRK 50 (154)
Q Consensus 24 ii~~~v~~~vll~i~~~~~~~~~~~r~ 50 (154)
+++++++++++++++.++++...+--+
T Consensus 4 ~v~vlVaa~llV~~i~l~l~~r~raA~ 30 (299)
T KOG3054|consen 4 IVAVLVAAALLVAVILLFLWKRRRAAR 30 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 345566666677777777777766555
No 405
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=30.22 E-value=28 Score=28.01 Aligned_cols=23 Identities=9% Similarity=0.296 Sum_probs=9.5
Q ss_pred eEEEehhHHHHHHHHHHHHHHHH
Q 043043 22 MAVVGSVLACSVLICILEIVLSF 44 (154)
Q Consensus 22 ~~ii~~~v~~~vll~i~~~~~~~ 44 (154)
-++++.+.++..++.++.+++++
T Consensus 43 L~lla~l~aa~l~l~Ll~ll~yl 65 (526)
T KOG4433|consen 43 LLLLAALAAACLGLSLLFLLFYL 65 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433333333333
No 406
>PF05356 Phage_Coat_B: Phage Coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 1QL1_A 2XKM_A 4IFM_A 1QL2_A 1IFM_A 2KLV_A 1IFN_A 2IFN_A 3IFM_A 2KSJ_A ....
Probab=29.45 E-value=1e+02 Score=18.15 Aligned_cols=13 Identities=8% Similarity=0.429 Sum_probs=4.9
Q ss_pred hHHHHHHHHHHHH
Q 043043 28 VLACSVLICILEI 40 (154)
Q Consensus 28 ~v~~~vll~i~~~ 40 (154)
++++++++.++.+
T Consensus 63 IVgvl~~laVaGl 75 (83)
T PF05356_consen 63 IVGVLVILAVAGL 75 (83)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 407
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=29.20 E-value=56 Score=26.79 Aligned_cols=9 Identities=22% Similarity=0.471 Sum_probs=3.5
Q ss_pred hHHHHHHHH
Q 043043 28 VLACSVLIC 36 (154)
Q Consensus 28 ~v~~~vll~ 36 (154)
+++.+++++
T Consensus 5 iv~llVilv 13 (570)
T COG4477 5 IVALLVILV 13 (570)
T ss_pred HHHHHHHHH
Confidence 343333333
No 408
>PF04415 DUF515: Protein of unknown function (DUF515) ; InterPro: IPR007509 This is a family of hypothetical archaeal proteins.
Probab=28.94 E-value=74 Score=25.23 Aligned_cols=22 Identities=14% Similarity=0.289 Sum_probs=9.6
Q ss_pred ceeEEEehhHHHHHHHHHHHHH
Q 043043 20 HFMAVVGSVLACSVLICILEIV 41 (154)
Q Consensus 20 ~~~~ii~~~v~~~vll~i~~~~ 41 (154)
...+++|+++.++++++++..+
T Consensus 29 ~~riiiGa~Vl~iIii~~~~~~ 50 (416)
T PF04415_consen 29 RKRIIIGAAVLIIIIIFIVYNI 50 (416)
T ss_pred hhhhhhhhhhHhHHHHHHHHHH
Confidence 3345555544444444433333
No 409
>PF15179 Myc_target_1: Myc target protein 1
Probab=28.75 E-value=94 Score=21.72 Aligned_cols=11 Identities=0% Similarity=0.232 Sum_probs=4.5
Q ss_pred EEEehhHHHHH
Q 043043 23 AVVGSVLACSV 33 (154)
Q Consensus 23 ~ii~~~v~~~v 33 (154)
+|++.-++.++
T Consensus 21 lIlaF~vSm~i 31 (197)
T PF15179_consen 21 LILAFCVSMAI 31 (197)
T ss_pred HHHHHHHHHHH
Confidence 44444343333
No 410
>PHA03290 envelope glycoprotein I; Provisional
Probab=28.73 E-value=2e+02 Score=22.24 Aligned_cols=14 Identities=21% Similarity=0.342 Sum_probs=5.6
Q ss_pred EEEehhHHHHHHHH
Q 043043 23 AVVGSVLACSVLIC 36 (154)
Q Consensus 23 ~ii~~~v~~~vll~ 36 (154)
..+.+.+++.++++
T Consensus 273 ~~ivipi~~~llil 286 (357)
T PHA03290 273 FLIAIPITASLLII 286 (357)
T ss_pred EEEEehHHHHHHHH
Confidence 33444444334333
No 411
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=28.64 E-value=19 Score=22.61 Aligned_cols=20 Identities=5% Similarity=0.213 Sum_probs=0.0
Q ss_pred eEEEehhHHHHHHHHHHHHH
Q 043043 22 MAVVGSVLACSVLICILEIV 41 (154)
Q Consensus 22 ~~ii~~~v~~~vll~i~~~~ 41 (154)
..+++++.+.++++++++++
T Consensus 29 k~~~~i~~s~~~ll~lval~ 48 (106)
T PF11837_consen 29 KCLAAIFSSLLFLLSLVALI 48 (106)
T ss_dssp --------------------
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 412
>COG5538 SEC66 Endoplasmic reticulum translocation complex, subunit SEC66 [Cell motility and secretion]
Probab=28.24 E-value=1.1e+02 Score=20.81 Aligned_cols=9 Identities=22% Similarity=0.372 Sum_probs=3.8
Q ss_pred ecCCCcceE
Q 043043 113 GKGAFGNVY 121 (154)
Q Consensus 113 G~g~~g~vy 121 (154)
-.|..|.-|
T Consensus 95 ~~g~igee~ 103 (180)
T COG5538 95 EDGMIGEEH 103 (180)
T ss_pred HcCCccHHH
Confidence 344444444
No 413
>KOG4699 consensus Preprotein translocase subunit Sec66 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.24 E-value=1.1e+02 Score=20.81 Aligned_cols=9 Identities=22% Similarity=0.372 Sum_probs=3.8
Q ss_pred ecCCCcceE
Q 043043 113 GKGAFGNVY 121 (154)
Q Consensus 113 G~g~~g~vy 121 (154)
-.|..|.-|
T Consensus 95 ~~g~igee~ 103 (180)
T KOG4699|consen 95 EDGMIGEEH 103 (180)
T ss_pred HcCCccHHH
Confidence 344444444
No 414
>PHA03292 envelope glycoprotein I; Provisional
Probab=27.46 E-value=1.9e+02 Score=22.80 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=5.7
Q ss_pred hhHHHHHHHHHHHH
Q 043043 27 SVLACSVLICILEI 40 (154)
Q Consensus 27 ~~v~~~vll~i~~~ 40 (154)
+.+.++++++++++
T Consensus 323 ip~~~~~llll~~~ 336 (413)
T PHA03292 323 IPTACVVLLLLAVV 336 (413)
T ss_pred hHHHHHHHHHHHHH
Confidence 33444444444333
No 415
>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]
Probab=27.42 E-value=81 Score=23.41 Aligned_cols=27 Identities=30% Similarity=0.272 Sum_probs=23.2
Q ss_pred eeecCCCcceEEEEeCCCCEEEEEEec
Q 043043 111 VMGKGAFGNVYRGTLRNSMKVAVKRGE 137 (154)
Q Consensus 111 ~iG~g~~g~vy~g~l~~g~~vaVK~l~ 137 (154)
.|+.|.-+.||+|.-.++..+|||...
T Consensus 55 ~istGKEA~Vy~a~~~~~~~~avKiyr 81 (268)
T COG1718 55 CISTGKEANVYLAETGDGRYVAVKIYR 81 (268)
T ss_pred eecCCcceEEEeeccCCCceEEEEEEe
Confidence 366788889999998888999999984
No 416
>KOG1236 consensus Predicted unusual protein kinase [General function prediction only]
Probab=26.69 E-value=35 Score=27.47 Aligned_cols=50 Identities=24% Similarity=0.221 Sum_probs=0.0
Q ss_pred cHHHHHHhhcCccccceeecCCCcceEEEEe----------------CCCCEEEEEEecCC-CCCChHHHH
Q 043043 95 PYVEIKFATHNFDRKLVMGKGAFGNVYRGTL----------------RNSMKVAVKRGETG-SGQGLPEFQ 148 (154)
Q Consensus 95 ~~~~l~~at~~f~~~~~iG~g~~g~vy~g~l----------------~~g~~vaVK~l~~~-~~~~~~~f~ 148 (154)
+++++-..-+.+. ||.|+.+.||+|.+ +..+.+|+|.++.. ..+-..+|.
T Consensus 184 ~~~eiF~efn~~P----IGsG~IAQVY~atl~~a~lekd~~~~~~~~~~tq~~AiKv~Hp~V~~~ir~Dl~ 250 (565)
T KOG1236|consen 184 KIEEIFSEFNREP----IGSGCIAQVYRATLKTAYLEKDSGKEYVQKLGTQSCAIKVLHPNVEKQIRLDLG 250 (565)
T ss_pred cHHHHHHhcCCcc----cccchhhhhhhhhhhHHHhhcccchhhhcCCccceeeeeccCccHHHHHHHHHH
No 417
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=26.58 E-value=1.2e+02 Score=18.78 Aligned_cols=43 Identities=12% Similarity=-0.059 Sum_probs=0.0
Q ss_pred CCCCcccCCCCCcceeEEEehhHHHHHHHHHHHHHHHHHHHHh
Q 043043 7 AGSVPVVNGPKKKHFMAVVGSVLACSVLICILEIVLSFVLIWR 49 (154)
Q Consensus 7 ~~~~~~~~~~~~~~~~~ii~~~v~~~vll~i~~~~~~~~~~~r 49 (154)
+.++....+++..-...-|-++..+.+++.+=+++-+++|-|+
T Consensus 2 a~tpvs~~KPsGsL~PWeIfLItLasVvvavGl~aGLfFcvR~ 44 (106)
T PF14654_consen 2 AHTPVSEVKPSGSLKPWEIFLITLASVVVAVGLFAGLFFCVRN 44 (106)
T ss_pred CcCcccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhh
No 418
>PHA03281 envelope glycoprotein E; Provisional
Probab=26.45 E-value=1.5e+02 Score=24.51 Aligned_cols=50 Identities=8% Similarity=0.008 Sum_probs=0.0
Q ss_pred cCCCCCcccCCCCCcceeEEEehhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 043043 5 EKAGSVPVVNGPKKKHFMAVVGSVLACSVLICILEIVLSFVLIWRKQKPD 54 (154)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~ii~~~v~~~vll~i~~~~~~~~~~~r~~~~~ 54 (154)
...+.-++.+..+.....+-.+++.+.+++++++++++.+|..++-+++.
T Consensus 537 ~~~~~~~~~s~~~~~p~~~y~~l~~~~a~~~ll~l~~~~~c~~~~~~~~~ 586 (642)
T PHA03281 537 KEIANNDVISEPGTFPFKRYAAITGGFAALALLCLAIALICTAKKFGHKA 586 (642)
T ss_pred ccccCCccccccCCCCeEeehhhhhhhHHHHHHHHHHHHHHHHHHhhhhe
No 419
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=26.09 E-value=1.4e+02 Score=20.31 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=0.0
Q ss_pred CCCCCcceeEEEehhHHHHHHHHHHHHHHHHHH
Q 043043 14 NGPKKKHFMAVVGSVLACSVLICILEIVLSFVL 46 (154)
Q Consensus 14 ~~~~~~~~~~ii~~~v~~~vll~i~~~~~~~~~ 46 (154)
+.++..+..+++.+++..++++++.+...+++.
T Consensus 8 ~~~~~~~k~~~~I~liv~ivl~~~a~~~~~~~~ 40 (159)
T COG1580 8 GAPAKKKKKSLWILLIVLIVLLALAGAGYFFWF 40 (159)
T ss_pred CCCccCCCceeehHHHHHHHHHHHHHHHHHHhh
No 420
>PRK13707 conjugal transfer pilus assembly protein TraL; Provisional
Probab=26.06 E-value=83 Score=19.59 Aligned_cols=31 Identities=13% Similarity=0.036 Sum_probs=0.0
Q ss_pred EehhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 043043 25 VGSVLACSVLICILEIVLSFVLIWRKQKPDE 55 (154)
Q Consensus 25 i~~~v~~~vll~i~~~~~~~~~~~r~~~~~~ 55 (154)
++++.+-.++.+++++.+++..|+-|++...
T Consensus 38 ~Gi~~~~~l~g~i~g~~~~~~~r~lK~g~g~ 68 (101)
T PRK13707 38 WGITTSKYLFGIIAAVLVWFGIRKLKKGRGS 68 (101)
T ss_pred HHHHHchHHHHHHHHHHHHHHHHHHHcCCCh
No 421
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.02 E-value=45 Score=19.31 Aligned_cols=35 Identities=14% Similarity=-0.005 Sum_probs=0.0
Q ss_pred EEEehhHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 043043 23 AVVGSVLACSVLICILEIVLSFVLIWRKQKPDEFP 57 (154)
Q Consensus 23 ~ii~~~v~~~vll~i~~~~~~~~~~~r~~~~~~~~ 57 (154)
+++++++.++.+++-++..+++-++.-.+...+.|
T Consensus 3 l~lail~ivl~ll~G~~~G~fiark~~~k~lk~NP 37 (71)
T COG3763 3 LWLAILLIVLALLAGLIGGFFIARKQMKKQLKDNP 37 (71)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
No 422
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=25.89 E-value=85 Score=31.26 Aligned_cols=32 Identities=3% Similarity=0.054 Sum_probs=0.0
Q ss_pred EEehhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 043043 24 VVGSVLACSVLICILEIVLSFVLIWRKQKPDE 55 (154)
Q Consensus 24 ii~~~v~~~vll~i~~~~~~~~~~~r~~~~~~ 55 (154)
++++++..+++++++++++.|+++.++++...
T Consensus 3995 li~I~V~l~~ifilvvlf~~crKk~~rkky~~ 4026 (4289)
T KOG1219|consen 3995 LIIIIVLLALIFILVVLFWKCRKKNSRKKYGA 4026 (4289)
T ss_pred eeehhHHHHHHHHHHHHHHhhhhhccCCcccc
No 423
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=25.63 E-value=1.1e+02 Score=15.79 Aligned_cols=31 Identities=29% Similarity=0.231 Sum_probs=0.0
Q ss_pred EehhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 043043 25 VGSVLACSVLICILEIVLSFVLIWRKQKPDE 55 (154)
Q Consensus 25 i~~~v~~~vll~i~~~~~~~~~~~r~~~~~~ 55 (154)
+|+..-++++..+.+...+.....++.+..+
T Consensus 11 vGL~Sl~vI~~~igm~~~~~~~F~~k~~~~~ 41 (42)
T PF11346_consen 11 VGLMSLIVIVFTIGMGVFFIRYFIRKMKEDE 41 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
No 424
>KOG2952 consensus Cell cycle control protein [Cell cycle control, cell division, chromosome partitioning; Transcription; Signal transduction mechanisms]
Probab=25.59 E-value=1.1e+02 Score=23.63 Aligned_cols=47 Identities=13% Similarity=0.232 Sum_probs=0.0
Q ss_pred CCCcceeEEEehhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCCcccc
Q 043043 16 PKKKHFMAVVGSVLACSVLICILEIVLSFVLIWRKQKPDEFPLAMDWSLL 65 (154)
Q Consensus 16 ~~~~~~~~ii~~~v~~~vll~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 65 (154)
..+...-.|+-++||++.+++.+++++++..+.|+..... ...|...
T Consensus 305 GgkN~FLgI~YLvVG~ic~~l~~~f~~~~l~~~r~~~d~~---~l~~~~~ 351 (351)
T KOG2952|consen 305 GGKNPFLGIAYLVVGSICILLGLIFLVIYLFKPRRLGDPS---YLSWNRS 351 (351)
T ss_pred ccCCccceehHHHHHHHHHHHHHHHHHHHhhcccccCCcc---ccccccC
No 425
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=25.54 E-value=1.4e+02 Score=20.13 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCC
Q 043043 30 ACSVLICILEIVLSFVLIWRKQKPDEFPLAMD 61 (154)
Q Consensus 30 ~~~vll~i~~~~~~~~~~~r~~~~~~~~~~~~ 61 (154)
+.-+++++++..+++.+.||+.+....+...+
T Consensus 110 ~~Pv~llllG~~~~~~~~rrr~~~~~~~Ls~e 141 (153)
T COG3088 110 GLPVVLLLLGGVLLVRRARRRVREPPQTLSAE 141 (153)
T ss_pred HhHHHHHHHHHHHHHHHHhhhhccCCCCCChh
No 426
>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]
Probab=24.84 E-value=43 Score=25.39 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=0.0
Q ss_pred cCccccceeecCCCcceEEEEe-CCCCEEEEEEecCCCCCC--------hHHHHHHHhhC
Q 043043 104 HNFDRKLVMGKGAFGNVYRGTL-RNSMKVAVKRGETGSGQG--------LPEFQTAIIVL 154 (154)
Q Consensus 104 ~~f~~~~~iG~g~~g~vy~g~l-~~g~~vaVK~l~~~~~~~--------~~~f~~e~~~l 154 (154)
+++.+..+||.|....|-+.+- +.|...|+|.++...... ...-.+|+++|
T Consensus 17 ~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~IL 76 (411)
T KOG0599|consen 17 AKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISIL 76 (411)
T ss_pred hhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHH
No 427
>PHA03054 IMV membrane protein; Provisional
Probab=24.71 E-value=49 Score=19.13 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=0.0
Q ss_pred cCCCCCcccCCCCCcceeEEEehhHHHHHHHHHHHHHH
Q 043043 5 EKAGSVPVVNGPKKKHFMAVVGSVLACSVLICILEIVL 42 (154)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~ii~~~v~~~vll~i~~~~~ 42 (154)
++..++...+.++......++.+++.+++++++..+.+
T Consensus 32 ~dk~~~~~~~~~~~~~~~~~ii~l~~v~~~~l~~flYL 69 (72)
T PHA03054 32 SDEKTVTSTNNTGCWGWYWLIIIFFIVLILLLLIYLYL 69 (72)
T ss_pred cCCCCcccccccCCchHHHHHHHHHHHHHHHHHHHHHH
No 428
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=24.69 E-value=1.2e+02 Score=21.60 Aligned_cols=51 Identities=12% Similarity=-0.072 Sum_probs=0.0
Q ss_pred ccccCCCCCcccCCCCCcceeEEEehhHHHHHHHHHHHHHHHHHHHHhcCC
Q 043043 2 EIIEKAGSVPVVNGPKKKHFMAVVGSVLACSVLICILEIVLSFVLIWRKQK 52 (154)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~vll~i~~~~~~~~~~~r~~~ 52 (154)
.++......+-+.+.+......++......++++++.++.+++-+|..+.+
T Consensus 83 ~~s~~~~~~~~~~~~r~~~lI~lv~~g~~lLla~~~~~~Y~~~~Rrs~~~~ 133 (202)
T PF06365_consen 83 NFSEGDSCSHQSSSDRYPTLIALVTSGSFLLLAILLGAGYCCHQRRSWSKK 133 (202)
T ss_pred ccccccccCCCCcCccceEEEehHHhhHHHHHHHHHHHHHHhhhhccCCcc
No 429
>PF11431 Transport_MerF: Membrane transport protein MerF; InterPro: IPR021091 This entry represents Mercury ion transport protein MerF, which has a core helix-loop-helix domain. It also has two vicinal pairs of cysteine residues which are involved in the transport of Hg(II) across the membrane and are exposed to the cytoplasm []. ; PDB: 1WAZ_A 2LJ2_A 2H3O_A.
Probab=24.68 E-value=1e+02 Score=16.23 Aligned_cols=20 Identities=10% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 043043 33 VLICILEIVLSFVLIWRKQK 52 (154)
Q Consensus 33 vll~i~~~~~~~~~~~r~~~ 52 (154)
++.+.+++.++-..||++++
T Consensus 27 aLa~fi~lt~yal~r~~~~~ 46 (46)
T PF11431_consen 27 ALAVFIGLTIYALWRRRRKQ 46 (46)
T ss_dssp THHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHhccC
No 430
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=24.57 E-value=49 Score=21.93 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=0.0
Q ss_pred eEEEehhHHHHHHHHHHHHHHHHHHHHhcCC
Q 043043 22 MAVVGSVLACSVLICILEIVLSFVLIWRKQK 52 (154)
Q Consensus 22 ~~ii~~~v~~~vll~i~~~~~~~~~~~r~~~ 52 (154)
+++++++.+.+.-.++..++-.+.++|+++|
T Consensus 124 ~~i~~~v~~~i~Y~l~~~~~~~~r~~r~~~r 154 (154)
T PF09835_consen 124 SLILGIVLGIISYFLVYFLVRKYRKRRRKRR 154 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
No 431
>PF07095 IgaA: Intracellular growth attenuator protein IgaA; InterPro: IPR010771 This family consists of several bacterial intracellular growth attenuator (IgaA) proteins. IgaA is involved in negative control of bacterial proliferation within fibroblasts. IgaA is homologous to the Escherichia coli YrfF and Proteus mirabilis UmoB proteins. Whereas the biological function of YrfF is currently unknown, UmoB has been shown elsewhere to act as a positive regulator of FlhDC, the master regulator of flagella and swarming. FlhDC has been shown to repress cell division during P. mirabilis swarming, suggesting that UmoB could repress cell division via FlhDC. This biological function, if maintained in Salmonella enterica, could sustain a putative negative control of cell division and growth exerted by IgaA in intracellular bacteria [].; GO: 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=24.48 E-value=1e+02 Score=26.10 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcC
Q 043043 27 SVLACSVLICILEIVLSFVLIWRKQ 51 (154)
Q Consensus 27 ~~v~~~vll~i~~~~~~~~~~~r~~ 51 (154)
+++.++++.++++...++++|+|++
T Consensus 5 ~iilail~~~li~~~~~~~~r~~r~ 29 (705)
T PF07095_consen 5 VIILAILLACLIIAGSFLWFRMRRR 29 (705)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC
No 432
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=24.20 E-value=1.2e+02 Score=15.70 Aligned_cols=20 Identities=5% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 043043 31 CSVLICILEIVLSFVLIWRK 50 (154)
Q Consensus 31 ~~vll~i~~~~~~~~~~~r~ 50 (154)
++.+++++++++....++|+
T Consensus 12 g~t~~~l~~l~~~~~~~~r~ 31 (46)
T PF04995_consen 12 GVTALVLAGLIVWSLRRRRR 31 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 433
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=23.89 E-value=1.1e+02 Score=14.99 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 043043 29 LACSVLICILEIVLSFVLIWRK 50 (154)
Q Consensus 29 v~~~vll~i~~~~~~~~~~~r~ 50 (154)
.++-++..++..+++-+.++||
T Consensus 14 LAAP~iagIi~s~iv~w~~~RK 35 (35)
T PF13940_consen 14 LAAPIIAGIIASLIVGWLRNRK 35 (35)
T ss_pred hHhHHHHHHHHHHHHHHHHhcC
No 434
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=23.88 E-value=1.8e+02 Score=21.76 Aligned_cols=45 Identities=13% Similarity=-0.045 Sum_probs=0.0
Q ss_pred CCCCCcccCCCCCcceeEEEehhHHHHHHHHHHHHHHHHHHHHhc
Q 043043 6 KAGSVPVVNGPKKKHFMAVVGSVLACSVLICILEIVLSFVLIWRK 50 (154)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~ii~~~v~~~vll~i~~~~~~~~~~~r~ 50 (154)
....++...+.+.+...+-.+..+..++++.++++++.-+.|++|
T Consensus 200 ~~~~~~~~~~~~~W~iv~g~~~G~~~L~ll~~lv~~~vr~krk~k 244 (278)
T PF06697_consen 200 PPPGAPPRKRSWWWKIVVGVVGGVVLLGLLSLLVAMLVRYKRKKK 244 (278)
T ss_pred CCcccccCCcceeEEEEEEehHHHHHHHHHHHHHHhhhhhhHHHH
No 435
>PF04483 DUF565: Protein of unknown function (DUF565); InterPro: IPR007572 This family represents Ycf20, it is found in cyanobacteria and is also encoded in plant and algal chloroplasts; its function is unknown. As the family is exclusively found in phototrophic organisms it may therefore play a role in photosynthesis.
Probab=23.78 E-value=1.3e+02 Score=16.76 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 043043 28 VLACSVLICILEIVLSFVLIWRKQKPDE 55 (154)
Q Consensus 28 ~v~~~vll~i~~~~~~~~~~~r~~~~~~ 55 (154)
+++++++++++=++...+++++++.+..
T Consensus 7 ~i~a~~iv~~~E~i~~l~Y~~~~~~~~~ 34 (60)
T PF04483_consen 7 VIAAAIIVLFIEVISRLRYSKPKKKRKS 34 (60)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccc
No 436
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=23.60 E-value=94 Score=20.15 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=0.0
Q ss_pred EehhHHHHHHHHHHHHHHHHHHHHhcC
Q 043043 25 VGSVLACSVLICILEIVLSFVLIWRKQ 51 (154)
Q Consensus 25 i~~~v~~~vll~i~~~~~~~~~~~r~~ 51 (154)
+...+++++++.++.++.+.+...+.+
T Consensus 6 vt~~Is~~ill~viglv~y~~l~~~~~ 32 (122)
T TIGR02588 6 VTFGISTLILAAMFGLVAYDWLRYSNK 32 (122)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhccCCC
No 437
>PRK11901 hypothetical protein; Reviewed
Probab=23.30 E-value=74 Score=24.33 Aligned_cols=15 Identities=13% Similarity=0.200 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHH
Q 043043 27 SVLACSVLICILEIV 41 (154)
Q Consensus 27 ~~v~~~vll~i~~~~ 41 (154)
+.+|++|||++|+.+
T Consensus 40 iGiGilVLlLLIi~I 54 (327)
T PRK11901 40 IGIGILVLLLLIIAI 54 (327)
T ss_pred HHHHHHHHHHHHHHH
No 438
>PF09802 Sec66: Preprotein translocase subunit Sec66; InterPro: IPR018624 Members of this family of proteins are a component of the heterotetrameric Sec62/63 complex composed of SEC62, SEC63, SEC66 and SEC72. The Sec62/63 complex associates with the Sec61 complex to form the Sec complex. Sec 66 is involved in SRP-independent post-translational translocation across the endoplasmic reticulum and functions together with the Sec61 complex and KAR2 in a channel-forming translocon complex. Furthermore, Sec66 is also required for growth at elevated temperatures [, , , ].
Probab=22.92 E-value=76 Score=22.28 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=0.0
Q ss_pred EEehhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCCccccccc
Q 043043 24 VVGSVLACSVLICILEIVLSFVLIWRKQKPDEFPLAMDWSLLHVH 68 (154)
Q Consensus 24 ii~~~v~~~vll~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 68 (154)
.+++.+..+-+.++++.+..|-...|+++..+.....+|-+.+..
T Consensus 3 ~~s~~~P~~Y~~vl~~sl~~Fs~~YRkr~~~~~~~l~p~F~~~~~ 47 (190)
T PF09802_consen 3 WVSLYTPLAYVAVLVGSLATFSSIYRKRKAAKSASLEPWFPEHLQ 47 (190)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchhH
No 439
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.63 E-value=54 Score=18.23 Aligned_cols=29 Identities=14% Similarity=0.037 Sum_probs=0.0
Q ss_pred eEEEehhHHHHHHHHHHHHHHHHHHHHhc
Q 043043 22 MAVVGSVLACSVLICILEIVLSFVLIWRK 50 (154)
Q Consensus 22 ~~ii~~~v~~~vll~i~~~~~~~~~~~r~ 50 (154)
++++.+.+++.+++..++.....++.+++
T Consensus 21 ~l~il~~f~~G~llg~l~~~~~~~~~r~~ 49 (68)
T PF06305_consen 21 GLLILIAFLLGALLGWLLSLPSRLRLRRR 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 440
>PF00974 Rhabdo_glycop: Rhabdovirus spike glycoprotein; InterPro: IPR001903 Different families of ssRNA negative-strand viruses contain glycoproteins responsible for forming spikes on the surface of the virion. The glycoprotein spike is made up of a trimer of glycoproteins. These proteins are frequently abbreviated to G protein. Channel formed by glycoprotein spike is thought to function in a similar manner to Influenza virus M2 protein channel, thus allowing a signal to pass across the viral membrane to signal for viral uncoating [, ].; GO: 0019031 viral envelope; PDB: 2CMZ_C 2J6J_A 3EGD_D.
Probab=22.54 E-value=29 Score=28.21 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=0.0
Q ss_pred eEEEehhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 043043 22 MAVVGSVLACSVLICILEIVLSFVLIWRKQKPDE 55 (154)
Q Consensus 22 ~~ii~~~v~~~vll~i~~~~~~~~~~~r~~~~~~ 55 (154)
|.....+++.++++++++++++.|+++.+++...
T Consensus 451 W~~~~~~~~~~vi~~illi~l~~cc~~~~r~~~~ 484 (501)
T PF00974_consen 451 WGEWLSIIAIAVILLILLILLIRCCCRCRRRRRP 484 (501)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc
No 441
>PTZ00234 variable surface protein Vir12; Provisional
Probab=22.49 E-value=1.4e+02 Score=23.97 Aligned_cols=58 Identities=12% Similarity=0.235 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHH---------HHHhcCCCCCCCcCCCcccccccCCCCCCCCCCCCCCCcccccCCcccccHH
Q 043043 27 SVLACSVLICILEIVLSFV---------LIWRKQKPDEFPLAMDWSLLHVHEGGGSHGGFPEGTGFPVHNVNLGLKIPYV 97 (154)
Q Consensus 27 ~~v~~~vll~i~~~~~~~~---------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (154)
+++|+++|-.|+.++.+.. .|+|+++.-+ +-=|+
T Consensus 367 iim~~ailGtifFlfyyn~ss~lks~~~krkrkk~~~e-------------------------------------hnyye 409 (433)
T PTZ00234 367 SIVGASIIGVLVFLFFFFKSTPIRSQTNKGEKKKRKPQ-------------------------------------NNYYD 409 (433)
T ss_pred HHHHHHHHHHHHHhhhhhcccchhccccchhhcccchh-------------------------------------hhhHH
Q ss_pred HHHHhhcCccccceeecCCCcceE
Q 043043 98 EIKFATHNFDRKLVMGKGAFGNVY 121 (154)
Q Consensus 98 ~l~~at~~f~~~~~iG~g~~g~vy 121 (154)
|-+..-..+..++.-.....+..|
T Consensus 410 eyEkel~~y~se~~~ldsq~~~~y 433 (433)
T PTZ00234 410 EYEEELPRYESQQSLAESQMSDAY 433 (433)
T ss_pred HHHHhhcccccccccccccccccC
No 442
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=22.37 E-value=1.5e+02 Score=19.72 Aligned_cols=22 Identities=14% Similarity=-0.014 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 043043 27 SVLACSVLICILEIVLSFVLIW 48 (154)
Q Consensus 27 ~~v~~~vll~i~~~~~~~~~~~ 48 (154)
+++.++.+++++++.++...|+
T Consensus 121 i~~~i~g~ll~i~~giy~~~r~ 142 (145)
T PF10661_consen 121 ILLSIGGILLAICGGIYVVLRK 142 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 443
>PHA03282 envelope glycoprotein E; Provisional
Probab=22.32 E-value=53 Score=26.50 Aligned_cols=48 Identities=10% Similarity=0.018 Sum_probs=0.0
Q ss_pred cCCCCCcccCCCCCcceeEEEehhHHHHHHHHHHHHHHHHHHHHhcCC
Q 043043 5 EKAGSVPVVNGPKKKHFMAVVGSVLACSVLICILEIVLSFVLIWRKQK 52 (154)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~ii~~~v~~~vll~i~~~~~~~~~~~r~~~ 52 (154)
+++.+....+......-..-+..+.|+++.+.++++.++.|.++++++
T Consensus 390 ep~Pp~~~~~p~p~~~~~~rl~~vlGaalgLav~glsvw~C~~c~r~r 437 (540)
T PHA03282 390 EPTPSARPPGPRPAARGALRLVGVLGAALGLAAAGLSVWACVTCRRAR 437 (540)
T ss_pred CCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHhhheeeeeehhhh
No 444
>PF07413 Herpes_UL37_2: Betaherpesvirus immediate-early glycoprotein UL37; InterPro: IPR010880 This family consists of several Betaherpesvirus immediate-early glycoprotein UL37 sequences. The human cytomegalovirus (HCMV) UL37 immediate-early regulatory protein is a type I integral membrane N-glycoprotein which traffics through the ER and the Golgi network [].
Probab=22.28 E-value=99 Score=23.10 Aligned_cols=28 Identities=14% Similarity=0.332 Sum_probs=0.0
Q ss_pred EEehhHHHHHHHHHHHHHHHHHHHHhcC
Q 043043 24 VVGSVLACSVLICILEIVLSFVLIWRKQ 51 (154)
Q Consensus 24 ii~~~v~~~vll~i~~~~~~~~~~~r~~ 51 (154)
++++.+.+.-.++++++++++..++|++
T Consensus 244 ~~g~~~v~~G~~~lL~LFc~l~~~~Rr~ 271 (276)
T PF07413_consen 244 LIGMFFVASGAFMLLSLFCCLSIWRRRD 271 (276)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhh
No 445
>COG4640 Predicted membrane protein [Function unknown]
Probab=22.06 E-value=1.3e+02 Score=23.88 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=0.0
Q ss_pred CCCcceeEEEehhHHHHHHHHHHHHHHH
Q 043043 16 PKKKHFMAVVGSVLACSVLICILEIVLS 43 (154)
Q Consensus 16 ~~~~~~~~ii~~~v~~~vll~i~~~~~~ 43 (154)
+++.....+|....+++++++|++++++
T Consensus 44 rkniskK~ii~was~a~~lIlii~~~~f 71 (465)
T COG4640 44 RKNISKKKIIPWASGAFILILIIILFFF 71 (465)
T ss_pred ccCCccceeehhHHHHHHHHHHHHHHHH
No 446
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=22.02 E-value=1.1e+02 Score=14.36 Aligned_cols=19 Identities=11% Similarity=0.282 Sum_probs=0.0
Q ss_pred EehhHHHHHHHHHHHHHHH
Q 043043 25 VGSVLACSVLICILEIVLS 43 (154)
Q Consensus 25 i~~~v~~~vll~i~~~~~~ 43 (154)
+++++|+++++++++-.++
T Consensus 3 ~~vi~G~ilv~lLlgYLvy 21 (29)
T PRK14748 3 AGVITGVLLVFLLLGYLVY 21 (29)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 447
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=22.00 E-value=1.2e+02 Score=15.09 Aligned_cols=19 Identities=11% Similarity=0.412 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 043043 27 SVLACSVLICILEIVLSFV 45 (154)
Q Consensus 27 ~~v~~~vll~i~~~~~~~~ 45 (154)
.+.+..+.++++.++++++
T Consensus 12 c~l~~llflv~imliif~f 30 (43)
T PF11395_consen 12 CFLSFLLFLVIIMLIIFWF 30 (43)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 448
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=21.68 E-value=28 Score=26.00 Aligned_cols=40 Identities=10% Similarity=0.009 Sum_probs=0.0
Q ss_pred cCCCCCcceeEEEehhHHHHHHHHHHHHHHHHHHHHhcCC
Q 043043 13 VNGPKKKHFMAVVGSVLACSVLICILEIVLSFVLIWRKQK 52 (154)
Q Consensus 13 ~~~~~~~~~~~ii~~~v~~~vll~i~~~~~~~~~~~r~~~ 52 (154)
++.+++...--+..++..+.++++++++.++++++-.+++
T Consensus 266 SSnss~S~s~~l~piil~IG~vl~i~~Ig~~ifK~~~~~~ 305 (305)
T PF04639_consen 266 SSNSSKSVSDSLLPIILIIGGVLLIVFIGYFIFKRLMNRQ 305 (305)
T ss_pred ccCccchhhhhhhHHHHHHHHHHHHHHhhheeeEeeccCC
No 449
>PHA03291 envelope glycoprotein I; Provisional
Probab=21.51 E-value=89 Score=24.26 Aligned_cols=33 Identities=12% Similarity=0.181 Sum_probs=0.0
Q ss_pred EEEehhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 043043 23 AVVGSVLACSVLICILEIVLSFVLIWRKQKPDE 55 (154)
Q Consensus 23 ~ii~~~v~~~vll~i~~~~~~~~~~~r~~~~~~ 55 (154)
+.|-..+-+.+++.-.++++.-|+|||++....
T Consensus 291 iAIPasii~cV~lGSC~Ccl~R~~rRr~r~~~~ 323 (401)
T PHA03291 291 IAIPASIIACVFLGSCACCLHRRCRRRRRRPAR 323 (401)
T ss_pred eccchHHHHHhhhhhhhhhhhhhhhcccCCcCc
No 450
>PRK04335 cell division protein ZipA; Provisional
Probab=21.44 E-value=52 Score=25.05 Aligned_cols=36 Identities=22% Similarity=0.038 Sum_probs=0.0
Q ss_pred EEehhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcC
Q 043043 24 VVGSVLACSVLICILEIVLSFVLIWRKQKPDEFPLA 59 (154)
Q Consensus 24 ii~~~v~~~vll~i~~~~~~~~~~~r~~~~~~~~~~ 59 (154)
++-+++|+++++.+++=.+|--++.++.+..+.+..
T Consensus 6 lvLiivGAlAI~ALL~HGlWtsrKe~~~~f~dkp~~ 41 (313)
T PRK04335 6 FVLIVVGALAIAALLFHGLWTSKKEGKSKFGDKPLG 41 (313)
T ss_pred ehHHHHHHHHHHHHHHhccccccccccchhccCcch
No 451
>PF15013 CCSMST1: CCSMST1 family
Probab=21.42 E-value=93 Score=18.41 Aligned_cols=17 Identities=6% Similarity=0.389 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043043 32 SVLICILEIVLSFVLIW 48 (154)
Q Consensus 32 ~vll~i~~~~~~~~~~~ 48 (154)
.+.+.+++++++||..|
T Consensus 35 ~is~sl~~fliyFC~lR 51 (77)
T PF15013_consen 35 PISLSLAAFLIYFCFLR 51 (77)
T ss_pred hhHHHHHHHHHHHhhcc
No 452
>PTZ00087 thrombosponding-related protein; Provisional
Probab=21.29 E-value=2.2e+02 Score=21.34 Aligned_cols=42 Identities=12% Similarity=0.229 Sum_probs=0.0
Q ss_pred CCCcccCCCCCcceeEEEehhHHHHHHHHHHHHHHHHHHHHh
Q 043043 8 GSVPVVNGPKKKHFMAVVGSVLACSVLICILEIVLSFVLIWR 49 (154)
Q Consensus 8 ~~~~~~~~~~~~~~~~ii~~~v~~~vll~i~~~~~~~~~~~r 49 (154)
+..|..-..+...+-.|..++..++++++++.++.-.++.++
T Consensus 282 PPCp~~~~~~~sst~~i~~i~~piv~vi~v~~ily~ify~~k 323 (340)
T PTZ00087 282 PPCNSLFEHKESSTFKILIILLPIVLIICVMGILYHIFYKKK 323 (340)
T ss_pred CCCCCccccCCCCcceEeeeehhHHHHHHHHHHHHHHhhhcc
No 453
>PF15345 TMEM51: Transmembrane protein 51
Probab=21.27 E-value=1.2e+02 Score=21.94 Aligned_cols=51 Identities=8% Similarity=-0.074 Sum_probs=0.0
Q ss_pred cCCCCCcccCC---CCCcceeEEEehhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 043043 5 EKAGSVPVVNG---PKKKHFMAVVGSVLACSVLICILEIVLSFVLIWRKQKPDE 55 (154)
Q Consensus 5 ~~~~~~~~~~~---~~~~~~~~ii~~~v~~~vll~i~~~~~~~~~~~r~~~~~~ 55 (154)
...+++...++ .....+.....+....+..-++++++.+|...|.|+++..
T Consensus 35 ~~~~~~~~~n~~~~~~~~~ksKt~SVAyVLVG~Gv~LLLLSICL~IR~KRr~rq 88 (233)
T PF15345_consen 35 GNKPTPQGSNSTEPSDGNLKSKTFSVAYVLVGSGVALLLLSICLSIRDKRRRRQ 88 (233)
T ss_pred CCCCCCCCCCCcCCCCCcccceeEEEEEehhhHHHHHHHHHHHHHHHHHHHHhh
No 454
>TIGR03501 gamma_C_targ gammaproteobacterial enzyme C-terminal transmembrane domain. This homology domain, largely restricted to a subset of the gamma proteobacteria that excludes the enterobacteria, is found at the extreme carboxyl-terminus of a diverse set of proteins, most of which are enzymes with conventional signal sequences and with hydrolytic activities: nucleases, proteases, agarases, etc. Species that have this domain at all typically have from two to fifteen proteins tagged with this domain at the C-terminus. The agarase AgaA from Vibro sp. strain JT0107 is secreted into the medium, while the same protein heterologously expressed in E. coli is retained in the cell fraction. This suggests cleavage and release in species with this domain. Both this suggestion, and the chemical structure of the domain (motif, hydrophobic predicted transmembrane helix, cluster of basic residues) closely parallels that of the LPXTG/sortase system and the PEP-CTERM/exosortase(EpsH) system.
Probab=21.24 E-value=1.1e+02 Score=14.01 Aligned_cols=20 Identities=15% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 043043 30 ACSVLICILEIVLSFVLIWR 49 (154)
Q Consensus 30 ~~~vll~i~~~~~~~~~~~r 49 (154)
++.-.+.++.+.++.++||+
T Consensus 3 GSlGwl~LllL~~~~~rRr~ 22 (26)
T TIGR03501 3 GSLGWLSLLLLLLLGLRRRR 22 (26)
T ss_pred chHHHHHHHHHHHHHHHHhh
No 455
>PF03381 CDC50: LEM3 (ligand-effect modulator 3) family / CDC50 family; InterPro: IPR005045 Members of this family have no known function. They have predicted transmembrane helices.; GO: 0016020 membrane
Probab=21.02 E-value=1.3e+02 Score=22.42 Aligned_cols=29 Identities=14% Similarity=0.082 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 043043 27 SVLACSVLICILEIVLSFVLIWRKQKPDE 55 (154)
Q Consensus 27 ~~v~~~vll~i~~~~~~~~~~~r~~~~~~ 55 (154)
+++|++.+++.+++++..+.+.|+.....
T Consensus 250 lvvg~i~~v~~i~~~~~~~~~~r~~gD~~ 278 (278)
T PF03381_consen 250 LVVGGICLVLAIIFLIIHYFKPRKLGDTS 278 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCC
No 456
>PF13131 DUF3951: Protein of unknown function (DUF3951)
Probab=20.97 E-value=1.2e+02 Score=16.39 Aligned_cols=27 Identities=7% Similarity=0.268 Sum_probs=0.0
Q ss_pred EehhHHHHHHHHHHHHHHHHHHHHhcC
Q 043043 25 VGSVLACSVLICILEIVLSFVLIWRKQ 51 (154)
Q Consensus 25 i~~~v~~~vll~i~~~~~~~~~~~r~~ 51 (154)
+|++...++++++++++.+-..-++..
T Consensus 6 iG~~~~~~~I~~lIgfity~mfV~K~s 32 (53)
T PF13131_consen 6 IGIILFTIFIFFLIGFITYKMFVKKAS 32 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHhheecCC
No 457
>PRK10905 cell division protein DamX; Validated
Probab=20.82 E-value=79 Score=24.16 Aligned_cols=15 Identities=13% Similarity=0.104 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHH
Q 043043 27 SVLACSVLICILEIV 41 (154)
Q Consensus 27 ~~v~~~vll~i~~~~ 41 (154)
+.+|++|||++|+.+
T Consensus 2 iGiGilVLlLLIigI 16 (328)
T PRK10905 2 MGVGILVLLLLIIGI 16 (328)
T ss_pred cchhHHHHHHHHHHH
No 458
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=20.59 E-value=1.8e+02 Score=20.38 Aligned_cols=31 Identities=16% Similarity=0.334 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 043043 27 SVLACSVLICILEIVLSFVLIWRKQKPDEFP 57 (154)
Q Consensus 27 ~~v~~~vll~i~~~~~~~~~~~r~~~~~~~~ 57 (154)
..+..++++++.++++++..|.|++.....+
T Consensus 17 ~~i~~iI~v~V~~~l~~~~~k~r~~~~~~~~ 47 (201)
T TIGR02866 17 LAVATTISLLVAALLAYVVWKFRRKGDEEKP 47 (201)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccccCCC
No 459
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=20.54 E-value=1.3e+02 Score=25.82 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=0.0
Q ss_pred CCCcceeEEEehhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 043043 16 PKKKHFMAVVGSVLACSVLICILEIVLSFVLIWRKQKP 53 (154)
Q Consensus 16 ~~~~~~~~ii~~~v~~~vll~i~~~~~~~~~~~r~~~~ 53 (154)
+.......|+..++++++++.+++++++...-...+++
T Consensus 708 p~~~~~~~i~lgvv~~ivligl~llliwkll~~~~Drr 745 (783)
T KOG1226|consen 708 PPGPNILAIVLGVVAGIVLIGLALLLIWKLLTTIHDRR 745 (783)
T ss_pred CCCCcEeeehHHHHHHHHHHHHHHHHHHHHhheecccH
No 460
>PF02404 SCF: Stem cell factor; InterPro: IPR003452 Stem cell factor (SCF) is a homodimer involved in hematopoiesis. SCF binds to and activates the SCF receptor (SCFR), a receptor tyrosine kinase. SCF stimulates the proliferation of mast cells and is able to augment the proliferation of both myeloid and lymphoid hematopoietic progenitors in bone marrow culture. It also mediates cell-cell adhesion and acts synergistically with other cytokines. SCF is a type I membrane protein, but is also found in a secretable, soluble form. The crystal structure of human SCF has been resolved and a potential receptor-binding site identified [].; GO: 0005173 stem cell factor receptor binding, 0007155 cell adhesion, 0016020 membrane; PDB: 1EXZ_A 1SCF_D 2E9W_C 2O26_A 2O27_A.
Probab=20.47 E-value=34 Score=25.23 Aligned_cols=50 Identities=12% Similarity=0.046 Sum_probs=0.0
Q ss_pred cccCCCCCcccCCCCCcceeEEEehhHHHHHHHHHHHHHHHHHHHHhcCC
Q 043043 3 IIEKAGSVPVVNGPKKKHFMAVVGSVLACSVLICILEIVLSFVLIWRKQK 52 (154)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~vll~i~~~~~~~~~~~r~~~ 52 (154)
+...++++............+-...++..+++-+++++++...+++++++
T Consensus 193 lrndsSssN~ka~g~~~~~slq~~~iAL~sl~SLVIGFvlG~l~WKkkq~ 242 (273)
T PF02404_consen 193 LRNDSSSSNRKASGSISDSSLQWPAIALPSLFSLVIGFVLGALYWKKKQR 242 (273)
T ss_dssp --------------------------------------------------
T ss_pred ccccccccchhhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 461
>TIGR03382 GC_trans_RRR Myxococcales GC_trans_RRR domain. The domain described here is small (about 30 amino acids), hydrophobic, only moderately conserved, and similar to numerous other transmembrane helix-containing sequence regions from convergent evolution. This domain is found, once per protein but in many proteins per genome in several bacteria of the order Myxococcales. It begins with a signature Gly-Cys motif. Its other features, including a hydrophobic transmembrane helix, Arg-rich cluster, and location at the protein C-terminus, resemble the PEP-CTERM proposed protein targeting domain.
Probab=20.36 E-value=1.1e+02 Score=14.00 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 043043 30 ACSVLICILEIVLSFVLIWRK 50 (154)
Q Consensus 30 ~~~vll~i~~~~~~~~~~~r~ 50 (154)
+...++.++++.+....+||+
T Consensus 7 g~~~~~~l~~l~l~~l~rRRR 27 (27)
T TIGR03382 7 GAGGLLALALLALAALLRRRR 27 (27)
T ss_pred chHHHHHHHHHHHHHHHhccC
No 462
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=20.35 E-value=20 Score=25.67 Aligned_cols=53 Identities=9% Similarity=0.059 Sum_probs=0.0
Q ss_pred ccccCCCCCcccCCCCCcceeEEEehhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 043043 2 EIIEKAGSVPVVNGPKKKHFMAVVGSVLACSVLICILEIVLSFVLIWRKQKPDE 55 (154)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~vll~i~~~~~~~~~~~r~~~~~~ 55 (154)
+.......+......++..+. -++.++.+++++++.+.+.+|+..+|+++...
T Consensus 138 e~~~~e~e~e~e~ee~pekks-~~g~ll~lllv~l~gGGa~yYfK~~K~K~~~~ 190 (218)
T PF14283_consen 138 ECTGEEPEPEPEPEEEPEKKS-GMGSLLLLLLVALIGGGAYYYFKFYKPKQEEK 190 (218)
T ss_pred cCCCCCCCCCCCCCCCccccc-chHHHHHHHHHHHhhcceEEEEEEeccccccc
No 463
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.25 E-value=84 Score=20.88 Aligned_cols=26 Identities=12% Similarity=0.081 Sum_probs=0.0
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHhcC
Q 043043 26 GSVLACSVLICILEIVLSFVLIWRKQ 51 (154)
Q Consensus 26 ~~~v~~~vll~i~~~~~~~~~~~r~~ 51 (154)
++++++++.+++++-++++-++||.+
T Consensus 11 ~vI~agiag~af~gYciYFd~KRrsd 36 (143)
T KOG4056|consen 11 SVIAAGIAGLAFIGYCIYFDKKRRSD 36 (143)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccC
No 464
>PF03264 Cytochrom_NNT: NapC/NirT cytochrome c family, N-terminal region; InterPro: IPR005126 Within the NapC/NirT family of cytochrome c proteins, some members, such as NapC P33932 from SWISSPROT and NirT P24038 from SWISSPROT, bind four haem groups, while others, such as TorC P33226 from SWISSPROT, bind five haems. This family aligns the common N-terminal region that contains four haem-binding C-X(2)-CH motifs.; PDB: 2VR0_F 2J7A_C.
Probab=20.09 E-value=82 Score=21.38 Aligned_cols=31 Identities=6% Similarity=0.029 Sum_probs=0.0
Q ss_pred CCcceeEEEehhHHHHHHHHHHHHHHHHHHH
Q 043043 17 KKKHFMAVVGSVLACSVLICILEIVLSFVLI 47 (154)
Q Consensus 17 ~~~~~~~ii~~~v~~~vll~i~~~~~~~~~~ 47 (154)
.+..+.+++.+++++++.++++.........
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (173)
T PF03264_consen 1 PSKKWSLLLLLLVGVVLGVVLLGGFAGAMHY 31 (173)
T ss_dssp ---------HSTTCHHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhh
No 465
>PF11157 DUF2937: Protein of unknown function (DUF2937); InterPro: IPR022584 This family of proteins with unknown function appears to be found mainly in Proteobacteria.
Probab=20.07 E-value=72 Score=21.81 Aligned_cols=33 Identities=15% Similarity=0.034 Sum_probs=0.0
Q ss_pred eEEEehhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 043043 22 MAVVGSVLACSVLICILEIVLSFVLIWRKQKPD 54 (154)
Q Consensus 22 ~~ii~~~v~~~vll~i~~~~~~~~~~~r~~~~~ 54 (154)
+++.+++.+.+..+++-++..+++...|+++.+
T Consensus 135 gi~~g~vg~l~~~~l~~~l~~l~~~~~rr~rrr 167 (167)
T PF11157_consen 135 GIVFGLVGALLGALLVELLLGLLRRPFRRRRRR 167 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Done!