BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043046
         (103 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3R1K|A Chain A, Crystal Structure Of Acetyltransferase Eis From
          Mycobacterium Tuberculosis H37rv In Complex With Coa
          And An Acetamide Moiety
          Length = 428

 Score = 27.3 bits (59), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 78 GHYTIWMDWMLGTLCDPADDDW 99
          G + +  D M  TLC P +DDW
Sbjct: 18 GSHMLQSDSMTVTLCSPTEDDW 39


>pdb|1IKF|H Chain H, A Conformation Of Cyclosporin A In Aqueous Environment
           Revealed By The X-Ray Structure Of A Cyclosporin-Fab
           Complex
          Length = 228

 Score = 26.9 bits (58), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 63  AGYHTIHHTTYRHNYGHYTIWM-DWMLGTL 91
           A Y+   HT Y   YG+Y +W  DW  GTL
Sbjct: 92  AMYYCTRHTLYDTLYGNYPVWFADWGQGTL 121


>pdb|2ZU7|A Chain A, Crystal Structure Of Mannosyl-3-Phosphoglycerate
          Synthase From Pyrococcus Horikoshii
 pdb|2ZU7|B Chain B, Crystal Structure Of Mannosyl-3-Phosphoglycerate
          Synthase From Pyrococcus Horikoshii
 pdb|2ZU8|A Chain A, Crystal Structure Of Mannosyl-3-Phosphoglycerate
          Synthase From Pyrococcus Horikoshii
 pdb|2ZU8|B Chain B, Crystal Structure Of Mannosyl-3-Phosphoglycerate
          Synthase From Pyrococcus Horikoshii
 pdb|2ZU9|A Chain A, Crystal Structure Of Mannosyl-3-Phosphoglycerate
          Synthase From Pyrococcus Horikoshii
 pdb|2ZU9|B Chain B, Crystal Structure Of Mannosyl-3-Phosphoglycerate
          Synthase From Pyrococcus Horikoshii
          Length = 394

 Score = 25.8 bits (55), Expect = 6.7,   Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 9  FHPLDGILQAVPHVIALFIV 28
           H +DG+L+A+PH   + IV
Sbjct: 64 LHLVDGVLKAIPHKCPIIIV 83


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.144    0.551 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,594,991
Number of Sequences: 62578
Number of extensions: 129388
Number of successful extensions: 347
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 342
Number of HSP's gapped (non-prelim): 6
length of query: 103
length of database: 14,973,337
effective HSP length: 68
effective length of query: 35
effective length of database: 10,718,033
effective search space: 375131155
effective search space used: 375131155
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)