Query 043046
Match_columns 103
No_of_seqs 118 out of 1064
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 21:36:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043046.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043046hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgp_C Inner centromere protei 35.5 17 0.00057 18.9 1.3 12 84-95 24-35 (43)
2 1m5n_Q PTHRP, PTH-RP, parathyr 23.5 29 0.00099 16.2 0.8 14 90-103 11-24 (28)
3 3t76_A VANU, transcriptional r 21.0 29 0.00098 20.1 0.7 18 62-79 2-19 (88)
4 2guh_A Putative TETR-family tr 17.5 27 0.00093 22.7 0.0 18 62-79 2-19 (214)
5 2lhu_A Mybpc3 protein; cardiac 16.3 30 0.001 22.0 0.0 16 62-77 2-17 (124)
6 2r6u_A Uncharacterized protein 15.5 34 0.0012 21.0 0.1 18 62-79 2-19 (148)
7 2of7_A Putative TETR-family tr 15.1 34 0.0012 22.8 0.0 19 62-80 4-22 (260)
8 3few_X Colicin S4; cell lysis, 14.3 1.3E+02 0.0043 23.3 2.9 41 29-70 463-504 (505)
9 3ttg_A Putative aminomethyltra 14.0 41 0.0014 24.5 0.2 16 62-77 2-17 (355)
10 2js3_A Uncharacterized protein 13.5 62 0.0021 19.1 0.8 16 62-77 2-17 (96)
No 1
>2vgp_C Inner centromere protein A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD6; 1.7A {Xenopus laevis} PDB: 2bfy_C* 2bfx_C* 2vrx_C* 2vgo_C* 3ztx_C*
Probab=35.47 E-value=17 Score=18.90 Aligned_cols=12 Identities=42% Similarity=0.706 Sum_probs=9.4
Q ss_pred HHhhcCCCCCCC
Q 043046 84 MDWMLGTLCDPA 95 (103)
Q Consensus 84 WDrlfGT~~~~~ 95 (103)
-|++||+-..++
T Consensus 24 ~d~iFG~I~pp~ 35 (43)
T 2vgp_C 24 VDRMYGTIDSPK 35 (43)
T ss_dssp HHHHTTTSCCCC
T ss_pred HHHHcCCCCCcC
Confidence 489999987664
No 2
>1m5n_Q PTHRP, PTH-RP, parathyroid hormone-related protein; all helical protein, heat repeats, protein transport; 2.90A {Homo sapiens}
Probab=23.53 E-value=29 Score=16.22 Aligned_cols=14 Identities=29% Similarity=0.171 Sum_probs=8.1
Q ss_pred CCCCCCCCcCcCCC
Q 043046 90 TLCDPADDDWGKTK 103 (103)
Q Consensus 90 T~~~~~~~~~~~~~ 103 (103)
||.++.-...||||
T Consensus 11 tYkeqplk~~~KkK 24 (28)
T 1m5n_Q 11 TYKEQPLKTPGKKK 24 (28)
T ss_dssp CSSSGGGCSSCCCC
T ss_pred hcccCCcccccccc
Confidence 45555555666665
No 3
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=21.04 E-value=29 Score=20.14 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=4.7
Q ss_pred CCchhhhhhcCCCCCccC
Q 043046 62 GAGYHTIHHTTYRHNYGH 79 (103)
Q Consensus 62 ~~~~H~~HH~~~~~NyG~ 79 (103)
+..+|.-||+....|++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (88)
T 3t76_A 2 GSSHHHHHHSSGRENLYF 19 (88)
T ss_dssp ------------CCCCSC
T ss_pred CccccccccCCCccchhh
Confidence 456788889988888876
No 4
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=17.51 E-value=27 Score=22.68 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=0.0
Q ss_pred CCchhhhhhcCCCCCccC
Q 043046 62 GAGYHTIHHTTYRHNYGH 79 (103)
Q Consensus 62 ~~~~H~~HH~~~~~NyG~ 79 (103)
+..+|.-||+..+-||-.
T Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (214)
T 2guh_A 2 GSSHHHHHHSSGRENLYF 19 (214)
T ss_dssp ------------------
T ss_pred CCcccccccccccccchh
Confidence 456788899988888754
No 5
>2lhu_A Mybpc3 protein; cardiac, structural protein; NMR {Mus musculus}
Probab=16.32 E-value=30 Score=21.99 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=0.0
Q ss_pred CCchhhhhhcCCCCCc
Q 043046 62 GAGYHTIHHTTYRHNY 77 (103)
Q Consensus 62 ~~~~H~~HH~~~~~Ny 77 (103)
+..+|.-||+..-|||
T Consensus 2 ~~~~~~~~~~~~~~~F 17 (124)
T 2lhu_A 2 GSSHHHHHHSSGLVPR 17 (124)
T ss_dssp ----------------
T ss_pred CcccccccccCccccc
Confidence 4567888999888999
No 6
>2r6u_A Uncharacterized protein; structural genomics, PSI-2, RHA04853, MCSG, protein structur initiative, midwest center for structural genomics; 1.50A {Rhodococcus SP}
Probab=15.47 E-value=34 Score=20.99 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=1.7
Q ss_pred CCchhhhhhcCCCCCccC
Q 043046 62 GAGYHTIHHTTYRHNYGH 79 (103)
Q Consensus 62 ~~~~H~~HH~~~~~NyG~ 79 (103)
+..+|.-||+..+-|+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (148)
T 2r6u_A 2 GSSHHHHHHSSGRENLYF 19 (148)
T ss_dssp ---------------CCC
T ss_pred Cccccccccccccccccc
Confidence 356788888877777754
No 7
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=15.05 E-value=34 Score=22.83 Aligned_cols=19 Identities=32% Similarity=0.413 Sum_probs=0.0
Q ss_pred CCchhhhhhcCCCCCccCC
Q 043046 62 GAGYHTIHHTTYRHNYGHY 80 (103)
Q Consensus 62 ~~~~H~~HH~~~~~NyG~~ 80 (103)
+..+|.-||+..+-||+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~ 22 (260)
T 2of7_A 4 GSSHHHHHHSSGRENLYFQ 22 (260)
T ss_dssp -------------------
T ss_pred Ccccccccccccccchhhh
Confidence 4678888999999998875
No 8
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=14.27 E-value=1.3e+02 Score=23.28 Aligned_cols=41 Identities=24% Similarity=0.307 Sum_probs=17.1
Q ss_pred cccHHHHHHHHHHHHHHHhhhccCcccCCC-CcCCCchhhhhh
Q 043046 29 PTHFTTHLGLLFLEAIWTTNIHDCIHGKLW-PWMGAGYHTIHH 70 (103)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~Hsg~~~~~~-~~~~~~~H~~HH 70 (103)
|+.+..+++++ ++.+.+.++=..+.-... .++-|++|+-||
T Consensus 463 P~taIGIaGiI-LmAvVgAlIDD~~VeKiNnel~~~~~~~~~~ 504 (505)
T 3few_X 463 PAIAVGIVGIL-LAAVVGALLDDKFADALNKEIIKPAHHHHHH 504 (505)
T ss_dssp CSSHHHHHHHH-HHHHHHHHHCTHHHHHHHHHTSCCCC-----
T ss_pred chhHHHHHHHH-HHHHHHHHhCHHHHHHHHHHhcCcccccccC
Confidence 34455555554 344455455444321111 156777777666
No 9
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum}
Probab=14.04 E-value=41 Score=24.49 Aligned_cols=16 Identities=38% Similarity=0.611 Sum_probs=1.5
Q ss_pred CCchhhhhhcCCCCCc
Q 043046 62 GAGYHTIHHTTYRHNY 77 (103)
Q Consensus 62 ~~~~H~~HH~~~~~Ny 77 (103)
+..+|.-||+..+-||
T Consensus 2 ~~~~~~~~~~~~~~~~ 17 (355)
T 3ttg_A 2 GSSHHHHHHSSGRENL 17 (355)
T ss_dssp --------------CC
T ss_pred Cccccccccccccccc
Confidence 4567888899887777
No 10
>2js3_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural G PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris}
Probab=13.53 E-value=62 Score=19.15 Aligned_cols=16 Identities=38% Similarity=0.611 Sum_probs=11.5
Q ss_pred CCchhhhhhcCCCCCc
Q 043046 62 GAGYHTIHHTTYRHNY 77 (103)
Q Consensus 62 ~~~~H~~HH~~~~~Ny 77 (103)
+..+|.-||+..+-|.
T Consensus 2 gsshhhhhhssgrenl 17 (96)
T 2js3_A 2 GSSHHHHHHSSGRENL 17 (96)
T ss_dssp CCCCSCCTTCCCCCCB
T ss_pred Ccccccccccccccce
Confidence 4567888888777664
Done!