Query 043046
Match_columns 103
No_of_seqs 118 out of 1064
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 21:36:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043046.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043046hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r11a3 d.75.1.1 (A:3-60) Dime 19.9 27 0.0019 17.3 1.6 13 7-19 26-38 (58)
2 d1v9sa1 c.61.1.1 (A:1-208) Ura 19.0 15 0.0011 23.5 0.6 8 84-91 201-208 (208)
3 d1o5oa_ c.61.1.1 (A:) Uracil P 18.4 15 0.0011 23.4 0.6 8 84-91 203-210 (210)
4 d1i5ea_ c.61.1.1 (A:) Uracil P 18.0 16 0.0011 23.4 0.5 8 84-91 201-208 (208)
5 d1bd3a_ c.61.1.1 (A:) Uracil P 15.8 18 0.0013 23.4 0.4 7 84-90 217-223 (224)
6 d2ftxb1 d.300.1.2 (B:155-213) 8.9 47 0.0034 17.0 0.6 16 73-88 40-58 (59)
7 d1puza_ a.218.1.1 (A:) Hypothe 8.9 73 0.0053 16.9 1.5 16 82-97 56-71 (82)
8 g1sse.1 g.78.1.1 (A:,B:) YAP1 8.0 52 0.0038 19.3 0.6 10 81-90 70-79 (121)
9 d1kf6d_ f.21.2.2 (D:) Fumarate 7.4 54 0.0039 19.2 0.5 9 63-71 78-86 (119)
10 d1q90g_ f.23.26.1 (G:) PetG su 6.6 96 0.007 13.4 1.0 11 12-22 2-12 (30)
No 1
>d1r11a3 d.75.1.1 (A:3-60) Dimeric tRNA splicing endonuclease, domains 1 and 3 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=19.94 E-value=27 Score=17.34 Aligned_cols=13 Identities=23% Similarity=0.616 Sum_probs=10.0
Q ss_pred cccCHHHHHHHHH
Q 043046 7 LAFHPLDGILQAV 19 (103)
Q Consensus 7 ~~~Hp~E~~l~~~ 19 (103)
.+.||+|.+..++
T Consensus 26 iylhplevvylqi 38 (58)
T d1r11a3 26 IYLHPLEVVYLQI 38 (58)
T ss_dssp EEECHHHHHHHHH
T ss_pred EEeeeeeEEEEEE
Confidence 5789999887653
No 2
>d1v9sa1 c.61.1.1 (A:1-208) Uracil PRTase, Upp {Thermus thermophilus [TaxId: 274]}
Probab=19.01 E-value=15 Score=23.50 Aligned_cols=8 Identities=38% Similarity=0.381 Sum_probs=5.7
Q ss_pred HHhhcCCC
Q 043046 84 MDWMLGTL 91 (103)
Q Consensus 84 WDrlfGT~ 91 (103)
=||.|||.
T Consensus 201 GDR~fgT~ 208 (208)
T d1v9sa1 201 GDRIYGTK 208 (208)
T ss_dssp HHHHHTCC
T ss_pred HHhccCCC
Confidence 37888874
No 3
>d1o5oa_ c.61.1.1 (A:) Uracil PRTase, Upp {Thermotoga maritima [TaxId: 2336]}
Probab=18.36 E-value=15 Score=23.42 Aligned_cols=8 Identities=25% Similarity=0.161 Sum_probs=5.8
Q ss_pred HHhhcCCC
Q 043046 84 MDWMLGTL 91 (103)
Q Consensus 84 WDrlfGT~ 91 (103)
=||+|||.
T Consensus 203 GDR~fgTk 210 (210)
T d1o5oa_ 203 GDRLFRTK 210 (210)
T ss_dssp HHHHHTCC
T ss_pred HHhhcCCC
Confidence 47888874
No 4
>d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus [TaxId: 1394]}
Probab=18.03 E-value=16 Score=23.40 Aligned_cols=8 Identities=38% Similarity=0.476 Sum_probs=6.0
Q ss_pred HHhhcCCC
Q 043046 84 MDWMLGTL 91 (103)
Q Consensus 84 WDrlfGT~ 91 (103)
=||+|||.
T Consensus 201 GDR~fGT~ 208 (208)
T d1i5ea_ 201 GDRLFGTK 208 (208)
T ss_dssp HHHHHSCC
T ss_pred HHhccCCC
Confidence 58888884
No 5
>d1bd3a_ c.61.1.1 (A:) Uracil PRTase, Upp {Toxoplasma gondii [TaxId: 5811]}
Probab=15.84 E-value=18 Score=23.39 Aligned_cols=7 Identities=43% Similarity=0.501 Sum_probs=4.4
Q ss_pred HHhhcCC
Q 043046 84 MDWMLGT 90 (103)
Q Consensus 84 WDrlfGT 90 (103)
=||.|||
T Consensus 217 GDR~fGT 223 (224)
T d1bd3a_ 217 GDRYFGT 223 (224)
T ss_dssp HHHHHTC
T ss_pred HHhhcCC
Confidence 3666666
No 6
>d2ftxb1 d.300.1.2 (B:155-213) Kinetochore protein Spc24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.94 E-value=47 Score=17.05 Aligned_cols=16 Identities=6% Similarity=0.100 Sum_probs=9.5
Q ss_pred CCCCccCCc---hhHHhhc
Q 043046 73 YRHNYGHYT---IWMDWML 88 (103)
Q Consensus 73 ~~~NyG~~~---~~WDrlf 88 (103)
-+.+|+.+| -+||||-
T Consensus 40 id~k~S~fF~tnYiWd~L~ 58 (59)
T d2ftxb1 40 LDNNLSDFYKTKYIWERLG 58 (59)
T ss_dssp CCTTSCHHHHHHHHHHHHT
T ss_pred cCCcccHHHHHHHHHHHhc
Confidence 345565544 3799874
No 7
>d1puza_ a.218.1.1 (A:) Hypothetical protein NMA1147 {Neisseria meningitidis, mc58 [TaxId: 487]}
Probab=8.89 E-value=73 Score=16.87 Aligned_cols=16 Identities=6% Similarity=-0.029 Sum_probs=12.0
Q ss_pred hhHHhhcCCCCCCCCC
Q 043046 82 IWMDWMLGTLCDPADD 97 (103)
Q Consensus 82 ~~WDrlfGT~~~~~~~ 97 (103)
.+||++.|....|+..
T Consensus 56 dL~~wl~g~~~~p~~~ 71 (82)
T d1puza_ 56 ELLALINGHSETDKGH 71 (82)
T ss_dssp HHHHHHHTCSCCSCTT
T ss_pred HHHHHHhCCCCCCcHH
Confidence 5789999988766543
No 8
>g1sse.1 g.78.1.1 (A:,B:) YAP1 redox domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.00 E-value=52 Score=19.29 Aligned_cols=10 Identities=10% Similarity=-0.034 Sum_probs=7.3
Q ss_pred chhHHhhcCC
Q 043046 81 TIWMDWMLGT 90 (103)
Q Consensus 81 ~~~WDrlfGT 90 (103)
..|||||=.-
T Consensus 70 s~IWdri~s~ 79 (121)
T g1sse.1 70 SEIWDRITTH 79 (121)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHcC
Confidence 4799999543
No 9
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=7.40 E-value=54 Score=19.16 Aligned_cols=9 Identities=44% Similarity=1.036 Sum_probs=7.6
Q ss_pred Cchhhhhhc
Q 043046 63 AGYHTIHHT 71 (103)
Q Consensus 63 ~~~H~~HH~ 71 (103)
...||+||.
T Consensus 78 h~~HRihHg 86 (119)
T d1kf6d_ 78 CGLHRMHHA 86 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 478999998
No 10
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.63 E-value=96 Score=13.39 Aligned_cols=11 Identities=9% Similarity=0.120 Sum_probs=5.8
Q ss_pred HHHHHHHHHHH
Q 043046 12 LDGILQAVPHV 22 (103)
Q Consensus 12 ~E~~l~~~~~~ 22 (103)
+|.++.++...
T Consensus 2 vE~ll~GivlG 12 (30)
T d1q90g_ 2 VEPLLCGIVLG 12 (30)
T ss_dssp CCHHHHHHHHH
T ss_pred chHHHHhHHHh
Confidence 35666664333
Done!