BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043050
(142 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U5E|A Chain A, Crystal Structure Of A N-Terminal Fragment Of Skap-Hom
Containing Both The Helical Dimerization Domain And The
Ph Domain
pdb|1U5E|B Chain B, Crystal Structure Of A N-Terminal Fragment Of Skap-Hom
Containing Both The Helical Dimerization Domain And The
Ph Domain
pdb|2OTX|A Chain A, Crystal Structure Of A N-Terminal Fragment Of Skap-Hom
Containing Both The Helical Dimerization Domain And The
Ph Domain
pdb|2OTX|B Chain B, Crystal Structure Of A N-Terminal Fragment Of Skap-Hom
Containing Both The Helical Dimerization Domain And The
Ph Domain
Length = 211
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 25 VNFNGLPKYDG---CCFYIGTPQKKDYFLCAETPGAARAWVSTL 65
V N + DG CCF I P K+ Y A +P A WV L
Sbjct: 160 VRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQL 203
>pdb|1U5F|A Chain A, Crystal Structure Of The Ph Domain Of Skap-Hom With 8
Vector-Derived N-Terminal Residues
Length = 148
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 25 VNFNGLPKYDG---CCFYIGTPQKKDYFLCAETPGAARAWVSTL 65
V N + DG CCF I P K+ Y A +P A WV L
Sbjct: 71 VRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQL 114
>pdb|1U5G|A Chain A, Crystal Structure Of The Ph Domain Of Skap-Hom
pdb|1U5G|B Chain B, Crystal Structure Of The Ph Domain Of Skap-Hom
pdb|1U5G|C Chain C, Crystal Structure Of The Ph Domain Of Skap-Hom
pdb|1U5G|D Chain D, Crystal Structure Of The Ph Domain Of Skap-Hom
Length = 122
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 25 VNFNGLPKYDG---CCFYIGTPQKKDYFLCAETPGAARAWVSTL 65
V N + DG CCF I P K+ Y A +P A WV L
Sbjct: 71 VRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQL 114
>pdb|1XYN|A Chain A, Structural Comparison Of Two Major Endo-1,4-Beta-Xylanases
From Trichodrema Reesei
Length = 178
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 1 TRRNEPTVKGTITFDENSTIAISP 24
TR NEP+++GT TF++ ++ SP
Sbjct: 108 TRVNEPSIQGTATFNQYISVRNSP 131
>pdb|2DCJ|A Chain A, A Two-domain Structure Of Alkaliphilic Xynj From Bacillus
Sp. 41m-1
pdb|2DCJ|B Chain B, A Two-domain Structure Of Alkaliphilic Xynj From Bacillus
Sp. 41m-1
pdb|2DCK|A Chain A, A Tetragonal-Lattice Structure Of Alkaliphilic Xynj From
Bacillus Sp. 41m-1
Length = 354
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 1 TRRNEPTVKGTITFDENSTIAIS 23
TR N+P++KGT TF + ++ S
Sbjct: 154 TRYNQPSIKGTATFQQYWSVRTS 176
>pdb|1XX0|A Chain A, Structure Of The C-Terminal Ph Domain Of Human Pleckstrin
Length = 127
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 26 NFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68
N NG + F I T + YFL A TP W+ + A
Sbjct: 80 NSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA 122
>pdb|1X05|A Chain A, Solution Structure Of The C-Terminal Ph Domain Of Human
Pleckstrin
Length = 129
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 26 NFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68
N NG + F I T + YFL A TP W+ + A
Sbjct: 76 NSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA 118
>pdb|1ZM0|A Chain A, Crystal Structure Of The Carboxyl Terminal Ph Domain Of
Pleckstrin To 2.1 Angstroms
pdb|1ZM0|B Chain B, Crystal Structure Of The Carboxyl Terminal Ph Domain Of
Pleckstrin To 2.1 Angstroms
Length = 114
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 26 NFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68
N NG + F I T + YFL A TP W+ + A
Sbjct: 67 NSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA 109
>pdb|2I5C|A Chain A, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,4,5)p5
pdb|2I5C|B Chain B, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,4,5)p5
pdb|2I5C|C Chain C, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,4,5)p5
pdb|2I5F|A Chain A, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,5,6)p5
Length = 109
Score = 25.8 bits (55), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 26 NFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68
N NG + F I T + YFL A TP W+ + A
Sbjct: 65 NSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,714,084
Number of Sequences: 62578
Number of extensions: 120716
Number of successful extensions: 273
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 264
Number of HSP's gapped (non-prelim): 9
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)