BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043050
(142 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P15800|LAMB2_RAT Laminin subunit beta-2 OS=Rattus norvegicus GN=Lamb2 PE=2 SV=1
Length = 1801
Score = 33.9 bits (76), Expect = 0.35, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 85 NGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRNALGTMTNRIT 131
N KLG V +VAA N++A +K +EA LR+ +G T R+T
Sbjct: 1236 NLQGKLGMVQAIVAARNTSAASTAKLVEATE--GLRHEIGKTTERLT 1280
>sp|Q32LP7|SKAP2_BOVIN Src kinase-associated phosphoprotein 2 OS=Bos taurus GN=SKAP2 PE=2
SV=1
Length = 358
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 25 VNFNGLPKYDG---CCFYIGTPQKKDYFLCAETPGAARAWVSTLH 66
V N + DG CCF I P K+ Y A +P A WV L+
Sbjct: 171 VRMNNTLRKDGKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLN 215
>sp|O75563|SKAP2_HUMAN Src kinase-associated phosphoprotein 2 OS=Homo sapiens GN=SKAP2
PE=1 SV=1
Length = 359
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 25 VNFNGLPKYDG---CCFYIGTPQKKDYFLCAETPGAARAWVSTL 65
V N + DG CCF I P K+ Y A +P A WV L
Sbjct: 171 VRMNNTLRKDGKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQL 214
>sp|Q5RDS2|SKAP2_PONAB Src kinase-associated phosphoprotein 2 OS=Pongo abelii GN=SKAP2
PE=2 SV=2
Length = 359
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 25 VNFNGLPKYDG---CCFYIGTPQKKDYFLCAETPGAARAWVSTL 65
V N + DG CCF I P K+ Y A +P A WV L
Sbjct: 171 VRMNNALRKDGKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQL 214
>sp|A9WPX4|PNP_RENSM Polyribonucleotide nucleotidyltransferase OS=Renibacterium
salmoninarum (strain ATCC 33209 / DSM 20767 / JCM 11484
/ NBRC 15589 / NCIMB 2235) GN=pnp PE=3 SV=2
Length = 746
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 14/102 (13%)
Query: 3 RNEPTVKGTITFD----ENSTIAISPV-------NFNGLPKYDGCCFYIGTPQKKDYFLC 51
R E + G T + E ++SPV N+N P G +G+P++++
Sbjct: 370 RGETQIMGVTTLNMLKMEQQIDSLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRRE---I 426
Query: 52 AETPGAARAWVSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTV 93
A RA V L + + A ++ +LS NGS +G+V
Sbjct: 427 GHGALAERALVPVLPSREEFPYAIRQVSEALSSNGSTSMGSV 468
>sp|A0JUV8|PNP_ARTS2 Polyribonucleotide nucleotidyltransferase OS=Arthrobacter sp.
(strain FB24) GN=pnp PE=3 SV=1
Length = 746
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 14/102 (13%)
Query: 3 RNEPTVKGTITFD----ENSTIAISPV-------NFNGLPKYDGCCFYIGTPQKKDYFLC 51
R E + G T + E ++SPV N+N P G +G+P++++
Sbjct: 374 RGETQIMGVTTLNMLKMEQQIDSLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRRE---I 430
Query: 52 AETPGAARAWVSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTV 93
A RA V L + + A ++ +LS NGS +G+V
Sbjct: 431 GHGALAERALVPVLPSREEFPYAIRQVSEALSSNGSTSMGSV 472
>sp|Q6PG29|SKAP2_DANRE Src kinase-associated phosphoprotein 2 OS=Danio rerio GN=skap2 PE=2
SV=1
Length = 341
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 36 CCFYIGTPQKKDYFLCAETPGAARAWVSTL 65
CCF + P K+ Y CA + A+ WV +
Sbjct: 174 CCFEVSAPDKRVYQFCAASEKEAKEWVEHI 203
>sp|Q5U597|SKA2B_XENLA Src kinase-associated phosphoprotein 2-B OS=Xenopus laevis
GN=skap2-b PE=2 SV=1
Length = 330
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 36 CCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEAV 79
CCF I P K+ Y A +P A W++ + ++ ++ E +
Sbjct: 174 CCFEIFAPDKRVYQFAASSPKEAEEWINAIMNSRGIIATEDEEL 217
>sp|Q5XGP7|SKA2A_XENLA Src kinase-associated phosphoprotein 2-A OS=Xenopus laevis
GN=skap2-a PE=2 SV=1
Length = 330
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 36 CCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ 69
CCF I P K+ Y A +P A W++ + A+
Sbjct: 174 CCFEILAPDKRVYQFAASSPKEAEEWINVIMNAR 207
>sp|Q5FVW6|SKAP2_XENTR Src kinase-associated phosphoprotein 2 OS=Xenopus tropicalis
GN=skap2 PE=2 SV=2
Length = 328
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 36 CCFYIGTPQKKDYFLCAETPGAARAWVSTL 65
CCF I P K+ Y A +P A WV+ +
Sbjct: 172 CCFEIFAPDKRVYQFAASSPKEAEEWVNII 201
>sp|Q3UND0|SKAP2_MOUSE Src kinase-associated phosphoprotein 2 OS=Mus musculus GN=Skap2
PE=1 SV=2
Length = 358
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 25 VNFNGLPKYDG---CCFYIGTPQKKDYFLCAETPGAARAWVSTL 65
V N + DG CCF I P K+ Y A +P A WV L
Sbjct: 171 VRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQL 214
>sp|Q61292|LAMB2_MOUSE Laminin subunit beta-2 OS=Mus musculus GN=Lamb2 PE=2 SV=2
Length = 1799
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 85 NGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRNALGTMTNRIT 131
N KLG V +++A N++A +K +EA LR+ +G T R+T
Sbjct: 1234 NMQGKLGMVQAIMSARNASAASTAKLVEATE--GLRHEIGKTTERLT 1278
>sp|Q920G0|SKAP2_RAT Src kinase-associated phosphoprotein 2 OS=Rattus norvegicus
GN=Skap2 PE=2 SV=1
Length = 358
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 36 CCFYIGTPQKKDYFLCAETPGAARAWVSTL 65
CCF I P K+ Y A +P A WV L
Sbjct: 185 CCFEICAPDKRIYQFTAASPKDAEEWVQQL 214
>sp|P47057|SNX4_YEAST Sorting nexin-4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SNX4 PE=1 SV=1
Length = 423
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 74 AHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEI---EAAMQISLRNALGTMTN 128
+ +E +N L G ++ G + A+ QEC KEI E+ ++ +LG++ +
Sbjct: 346 SRREKINKLEGKITSLTGELENAKKVADGFEQECLKEIDHFESVKTAEIKKSLGSLAD 403
>sp|C5BWR2|PNP_BEUC1 Polyribonucleotide nucleotidyltransferase OS=Beutenbergia cavernae
(strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=pnp PE=3
SV=1
Length = 744
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 15/112 (13%)
Query: 3 RNEPTVKGTITFD----ENSTIAISPV-------NFNGLPKYDGCCFYIGTPQKKDYFLC 51
R E + G T + E +SPV N+N P G +G+P++++
Sbjct: 370 RGETQILGVTTLNMLKMEQQLDTLSPVSRKRYMHNYNFPPYSTGETGRVGSPKRRE---I 426
Query: 52 AETPGAARAWVSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTV-ATVVAAANS 102
A RA V L A A ++ +LS NGS +G+V A+ ++ N+
Sbjct: 427 GHGALAERALVPVLPARDEFPYAIRQVSEALSSNGSTSMGSVCASTLSMLNA 478
>sp|P90794|DCA11_CAEEL DDB1- and CUL4-associated factor 11 homolog OS=Caenorhabditis
elegans GN=wdr-23 PE=2 SV=1
Length = 571
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 10 GTITFDENSTIAISPVNFNGLPKYDGCC-FYIGTPQKKDYFLCAETPGAARAW-VSTLHA 67
G + F E I P++ NG P D C F + + +C + + + V
Sbjct: 243 GKLDFTERQNITWFPIDLNGEPGRDHCAVFCVKFSDSSEQIVCGTSQYSIHVFDVEQRRR 302
Query: 68 AQLVLKAHKEAVNSL 82
+ ++ AH++ VNS+
Sbjct: 303 IRTIVNAHEDDVNSV 317
>sp|Q03164|MLL1_HUMAN Histone-lysine N-methyltransferase MLL OS=Homo sapiens GN=MLL PE=1
SV=5
Length = 3969
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 5 EPTVKGTITFDENSTIAISPVNF 27
EP + T+ DEN TIA SP +F
Sbjct: 2080 EPDINSTVEHDENRTIAHSPTSF 2102
>sp|O43301|HS12A_HUMAN Heat shock 70 kDa protein 12A OS=Homo sapiens GN=HSPA12A PE=1 SV=2
Length = 675
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 40 IGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAA 99
+ +P+ + + A P AA + L Q++ + K AVN SG+ + V A
Sbjct: 224 LASPENSEQLIIALEPEAASIYCRKLRLHQMIELSSKAAVNGYSGSDT---------VGA 274
Query: 100 ANSTAQECSKEIEAAMQISLRNALGTMTNRITDG 133
+ A+E + + + N +G + + + +G
Sbjct: 275 GFTQAKEHIRRNRQSRTFLVENVIGEIWSELEEG 308
>sp|Q9ES64|USH1C_MOUSE Harmonin OS=Mus musculus GN=Ush1c PE=1 SV=1
Length = 910
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 46/119 (38%), Gaps = 15/119 (12%)
Query: 20 IAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKA----- 74
+ IS V GL GC G QK F+ PG+ A V Q+V
Sbjct: 212 VFISLVGSRGL----GCSISSGPIQKPGIFVSHVKPGSLSAEVGLETGDQIVEVNGIDFT 267
Query: 75 ---HKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRNALGTMTNRI 130
HKEAVN L S++ T++ V A + +E A Q L+ M R+
Sbjct: 268 NLDHKEAVNVLK---SSRSLTISIVAGAGRELFMTDRERLEEARQRELQRQELLMQKRL 323
>sp|Q3MHQ0|USH1C_BOVIN Harmonin OS=Bos taurus GN=USH1C PE=2 SV=1
Length = 551
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 49/128 (38%), Gaps = 16/128 (12%)
Query: 15 DENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKA 74
++ + IS V GL GC G QK F+ PG+ A V Q+V
Sbjct: 207 NKEKKVFISLVGSRGL----GCSISSGPIQKPGIFISHVKPGSLSAEVGLETGDQIVEVN 262
Query: 75 --------HKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIE----AAMQISLRNA 122
HKEAVN L + S + VA T QE E+ ++ ++
Sbjct: 263 GIDFSNLDHKEAVNVLKSSRSLTISIVAGAGRELFMTDQERLAEVRQRELQRQELLMQKR 322
Query: 123 LGTMTNRI 130
L +N+I
Sbjct: 323 LAMESNKI 330
>sp|Q9Y6N9|USH1C_HUMAN Harmonin OS=Homo sapiens GN=USH1C PE=1 SV=3
Length = 552
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 48/124 (38%), Gaps = 15/124 (12%)
Query: 15 DENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKA 74
++ + IS V GL GC G QK F+ PG+ A V Q+V
Sbjct: 207 NKEKKVFISLVGSRGL----GCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVN 262
Query: 75 --------HKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRNALGTM 126
HKEAVN L S++ T++ V AA + + A Q L+ M
Sbjct: 263 GVDFSNLDHKEAVNVLK---SSRSLTISIVAAAGRELFMTDRERLAEARQRELQRQELLM 319
Query: 127 TNRI 130
R+
Sbjct: 320 QKRL 323
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.128 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,965,146
Number of Sequences: 539616
Number of extensions: 1713907
Number of successful extensions: 4371
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 4351
Number of HSP's gapped (non-prelim): 38
length of query: 142
length of database: 191,569,459
effective HSP length: 105
effective length of query: 37
effective length of database: 134,909,779
effective search space: 4991661823
effective search space used: 4991661823
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)