Query 043050
Match_columns 142
No_of_seqs 15 out of 17
Neff 2.2
Searched_HMMs 46136
Date Fri Mar 29 12:18:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043050.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043050hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01235 PH_SETbf Set binding f 98.5 8.4E-07 1.8E-11 59.4 7.2 63 3-67 35-99 (101)
2 PF00169 PH: PH domain; Inter 98.1 2.1E-05 4.5E-10 49.6 7.1 64 5-69 40-103 (104)
3 cd01251 PH_centaurin_alpha Cen 98.0 3E-05 6.4E-10 54.6 7.4 63 3-69 34-100 (103)
4 cd01265 PH_PARIS-1 PARIS-1 ple 97.9 3.3E-05 7.1E-10 53.6 6.3 56 3-67 37-92 (95)
5 cd01250 PH_centaurin Centaurin 97.8 4.2E-05 9.1E-10 49.6 4.9 34 33-67 60-93 (94)
6 cd01260 PH_CNK Connector enhan 97.8 9.6E-05 2.1E-09 49.9 6.7 59 3-68 38-96 (96)
7 cd01266 PH_Gab Gab (Grb2-assoc 97.8 9.1E-05 2E-09 52.0 6.6 62 3-66 44-105 (108)
8 cd01246 PH_oxysterol_bp Oxyste 97.7 0.00015 3.2E-09 46.8 6.0 53 7-68 39-91 (91)
9 cd01233 Unc104 Unc-104 pleckst 97.7 0.00023 5E-09 49.5 6.8 61 4-68 37-97 (100)
10 cd01236 PH_outspread Outspread 97.5 0.0004 8.7E-09 50.5 6.2 56 5-66 46-101 (104)
11 cd00821 PH Pleckstrin homology 97.5 0.0006 1.3E-08 41.3 6.1 56 6-67 40-95 (96)
12 cd01238 PH_Tec Tec pleckstrin 97.5 0.00054 1.2E-08 48.5 6.5 61 6-67 44-105 (106)
13 cd01247 PH_GPBP Goodpasture an 97.3 0.00092 2E-08 46.5 5.9 52 6-66 38-89 (91)
14 cd01252 PH_cytohesin Cytohesin 97.1 0.0033 7.2E-08 44.9 7.2 59 4-69 35-113 (125)
15 smart00233 PH Pleckstrin homol 97.0 0.0057 1.2E-07 37.1 6.8 59 6-68 42-100 (102)
16 cd01254 PH_PLD Phospholipase D 96.8 0.0077 1.7E-07 43.7 7.2 64 3-67 51-120 (121)
17 cd01264 PH_melted Melted pleck 96.6 0.0073 1.6E-07 44.1 5.8 59 7-68 42-100 (101)
18 cd01245 PH_RasGAP_CG5898 RAS G 96.4 0.011 2.3E-07 42.9 5.9 59 3-67 38-97 (98)
19 cd01257 PH_IRS Insulin recepto 96.3 0.018 3.9E-07 41.6 6.6 53 6-65 46-98 (101)
20 cd00900 PH-like Pleckstrin hom 96.0 0.045 9.9E-07 33.3 6.4 33 35-67 64-98 (99)
21 cd01253 PH_beta_spectrin Beta- 95.2 0.031 6.7E-07 38.1 3.7 33 36-68 72-104 (104)
22 cd01244 PH_RasGAP_CG9209 RAS_G 95.1 0.087 1.9E-06 37.8 6.0 57 6-67 41-97 (98)
23 cd01219 PH_FGD FGD (faciogenit 95.0 0.17 3.8E-06 35.3 7.2 34 34-68 65-98 (101)
24 cd01222 PH_clg Clg (common-sit 93.0 0.39 8.5E-06 34.7 5.9 57 14-70 38-96 (97)
25 cd01248 PH_PLC Phospholipase C 92.7 0.26 5.6E-06 34.9 4.6 36 32-67 76-114 (115)
26 cd01220 PH_CDEP Chondrocyte-de 92.2 0.29 6.2E-06 35.0 4.3 32 36-68 65-96 (99)
27 PF15413 PH_11: Pleckstrin hom 90.8 0.59 1.3E-05 33.5 4.8 37 31-68 76-112 (112)
28 cd01241 PH_Akt Akt pleckstrin 88.8 1.3 2.9E-05 30.9 5.2 36 31-67 61-100 (102)
29 cd01232 PH_TRIO Trio pleckstri 84.1 2.9 6.3E-05 31.0 5.1 50 18-67 57-110 (114)
30 cd01230 PH_EFA6 EFA6 Pleckstri 81.9 2.6 5.6E-05 31.3 4.1 33 37-69 79-111 (117)
31 cd01218 PH_phafin2 Phafin2 Pl 80.5 11 0.00024 27.5 6.9 32 36-68 66-97 (104)
32 PF14593 PH_3: PH domain; PDB: 79.7 4.3 9.3E-05 29.9 4.6 48 7-66 49-96 (104)
33 cd01263 PH_anillin Anillin Ple 76.0 5.9 0.00013 29.8 4.5 60 6-67 43-121 (122)
34 PF12814 Mcp5_PH: Meiotic cell 75.1 11 0.00025 27.4 5.7 32 35-67 88-119 (123)
35 cd01227 PH_Dbs Dbs (DBL's big 74.5 9.8 0.00021 29.3 5.4 55 13-67 58-113 (133)
36 cd01237 Unc112 Unc-112 pleckst 72.5 23 0.00051 26.6 6.9 62 3-68 38-102 (106)
37 cd01242 PH_ROK Rok (Rho- assoc 72.0 23 0.0005 27.2 6.9 56 12-67 48-108 (112)
38 PF15410 PH_9: Pleckstrin homo 68.3 12 0.00026 26.9 4.4 34 34-67 83-116 (119)
39 cd01259 PH_Apbb1ip Apbb1ip (Am 67.7 7 0.00015 30.1 3.3 32 37-68 70-107 (114)
40 cd01261 PH_SOS Son of Sevenles 67.6 13 0.00028 27.7 4.6 34 35-68 75-108 (112)
41 PTZ00267 NIMA-related protein 60.3 15 0.00032 31.2 4.2 32 37-68 444-475 (478)
42 PF15409 PH_8: Pleckstrin homo 57.2 29 0.00063 25.1 4.7 55 3-68 34-88 (89)
43 cd01262 PH_PDK1 3-Phosphoinosi 50.7 41 0.00089 24.7 4.7 50 7-67 37-86 (89)
44 cd01226 PH_exo84 Exocyst compl 50.4 33 0.00072 25.5 4.2 35 33-68 63-97 (100)
45 KOG1090 Predicted dual-specifi 42.4 13 0.00028 38.6 1.3 61 2-67 1669-1729(1732)
46 TIGR03485 cas_csx13_N CRISPR-a 33.6 52 0.0011 29.3 3.5 34 34-67 197-230 (316)
47 KOG0169 Phosphoinositide-speci 32.1 43 0.00092 32.8 2.9 41 33-73 85-126 (746)
48 TIGR00648 recU recombination p 31.7 37 0.0008 27.3 2.1 49 12-61 69-129 (169)
49 PF15396 FAM60A: Protein Famil 31.5 25 0.00055 29.7 1.2 18 26-43 2-22 (213)
50 cd01258 PH_syntrophin Syntroph 31.0 96 0.0021 23.2 4.1 29 37-65 76-105 (108)
51 PHA02949 Hypothetical protein; 28.5 27 0.00059 24.8 0.8 20 34-53 34-53 (65)
52 PRK02234 recU Holliday junctio 27.8 39 0.00085 27.7 1.7 40 12-51 92-143 (195)
53 KOG0521 Putative GTPase activa 27.4 1.1E+02 0.0024 29.7 4.8 43 33-78 333-375 (785)
54 PF13227 DUF4035: Protein of u 26.4 50 0.0011 22.5 1.7 13 60-72 11-23 (53)
55 PF15417 DUF4624: Domain of un 25.9 35 0.00075 27.1 1.0 20 17-36 86-105 (132)
56 PF02913 FAD-oxidase_C: FAD li 24.9 2.4E+02 0.0053 20.5 5.3 14 53-66 181-194 (248)
57 PF02809 UIM: Ubiquitin intera 24.0 81 0.0018 17.0 2.0 13 109-121 5-17 (18)
58 cd01925 cyclophilin_CeCYP16-li 23.9 54 0.0012 25.1 1.7 18 26-43 32-52 (171)
59 PF04668 Tsg: Twisted gastrula 23.7 24 0.00052 27.7 -0.2 14 29-42 98-115 (132)
60 PF10409 PTEN_C2: C2 domain of 23.3 59 0.0013 23.0 1.7 24 19-42 5-31 (134)
61 cd01228 PH_BCR-related BCR (br 23.1 2.3E+02 0.005 21.3 4.9 63 2-67 13-92 (96)
62 PLN02958 diacylglycerol kinase 22.8 83 0.0018 28.1 2.9 67 33-101 68-143 (481)
63 PF07750 GcrA: GcrA cell cycle 22.5 28 0.00061 27.1 -0.0 30 26-56 109-138 (162)
64 TIGR01728 SsuA_fam ABC transpo 21.3 2E+02 0.0043 21.3 4.2 45 35-84 182-227 (288)
No 1
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=98.47 E-value=8.4e-07 Score=59.44 Aligned_cols=63 Identities=24% Similarity=0.418 Sum_probs=46.3
Q ss_pred CCCCCcceeEEeecCceeeeeccccCCCCC-Cc-ceeEEeccccceeeEEeecChHHHHHHHHHHHH
Q 043050 3 RNEPTVKGTITFDENSTIAISPVNFNGLPK-YD-GCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA 67 (142)
Q Consensus 3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~k-yD-gCCfYIgt~~kk~yfLcAETp~aAraWv~tlrA 67 (142)
..|..++|.|.++...+|.+...+. +.|+ .+ .+||-|-| .++-|||+|||+..++.|+..||.
T Consensus 35 ~~~~~~~g~I~L~~~~~v~~~~~~~-~~~~~~~~~~~f~i~t-~~r~~~~~a~s~~e~~~Wi~ai~~ 99 (101)
T cd01235 35 FEDTAEKGCIDLAEVKSVNLAQPGM-GAPKHTSRKGFFDLKT-SKRTYNFLAENINEAQRWKEKIQQ 99 (101)
T ss_pred CCCCccceEEEcceeEEEeecCCCC-CCCCCCCCceEEEEEe-CCceEEEECCCHHHHHHHHHHHHh
Confidence 3568899999999988887644332 3333 22 34555545 566899999999999999999986
No 2
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=98.11 E-value=2.1e-05 Score=49.55 Aligned_cols=64 Identities=28% Similarity=0.478 Sum_probs=55.5
Q ss_pred CCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHH
Q 043050 5 EPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ 69 (142)
Q Consensus 5 e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~ 69 (142)
+..+++.|.++.. +|.-.+..-.+..+-...||.|-++..+.|+|++||+...+.|+..|+.+.
T Consensus 40 ~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 40 DSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTPNGKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp ESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred ceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 5688999999998 777766665557777889999999999999999999999999999998764
No 3
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=98.03 E-value=3e-05 Score=54.63 Aligned_cols=63 Identities=16% Similarity=0.350 Sum_probs=45.5
Q ss_pred CCCCCcceeEEeecCc---eeeee-ccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHH
Q 043050 3 RNEPTVKGTITFDENS---TIAIS-PVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ 69 (142)
Q Consensus 3 r~e~~~rg~I~fda~s---TvtiS-pvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~ 69 (142)
..|..++|.|.++... +|..+ |-...+ -..+||-|.|| +..|||+|||+...+.|+..|+.+.
T Consensus 34 ~~d~~~~G~I~L~~~~~~~~v~~~~~~~~~~---~~~~~F~i~t~-~Rty~l~a~s~~e~~~Wi~ai~~v~ 100 (103)
T cd01251 34 PLDAFAKGEVFLGSQEDGYEVREGLPPGTQG---NHWYGVTLVTP-ERKFLFACETEQDRREWIAAFQNVL 100 (103)
T ss_pred CCCcCcCcEEEeeccccceeEeccCCccccc---cccceEEEEeC-CeEEEEECCCHHHHHHHHHHHHHHh
Confidence 4678999999998654 23321 211112 12349999999 5599999999999999999997653
No 4
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.94 E-value=3.3e-05 Score=53.57 Aligned_cols=56 Identities=14% Similarity=0.271 Sum_probs=44.9
Q ss_pred CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHH
Q 043050 3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA 67 (142)
Q Consensus 3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrA 67 (142)
+.|..|+|.|.++. .+++.+|.+ ..++|-|.||.+ -|+|+|||+...+.|+..|..
T Consensus 37 ~~d~~p~G~I~L~~-~~~~~~~~~-------~~~~F~i~t~~r-~y~l~A~s~~e~~~Wi~al~~ 92 (95)
T cd01265 37 SQDAKPLGRVDLSG-AAFTYDPRE-------EKGRFEIHSNNE-VIALKASSDKQMNYWLQALQS 92 (95)
T ss_pred CCcccccceEECCc-cEEEcCCCC-------CCCEEEEEcCCc-EEEEECCCHHHHHHHHHHHHh
Confidence 46889999999987 445554432 247999999876 699999999999999998864
No 5
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.83 E-value=4.2e-05 Score=49.58 Aligned_cols=34 Identities=21% Similarity=0.526 Sum_probs=30.6
Q ss_pred CcceeEEeccccceeeEEeecChHHHHHHHHHHHH
Q 043050 33 YDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA 67 (142)
Q Consensus 33 yDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrA 67 (142)
...+||.|.||. +.|+|||||......|+..|+.
T Consensus 60 ~~~~~f~i~~~~-~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 60 DRRFCFEVISPT-KTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred CCceEEEEEcCC-cEEEEECCCHHHHHHHHHHHhc
Confidence 357899999998 7899999999999999999874
No 6
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=97.82 E-value=9.6e-05 Score=49.87 Aligned_cols=59 Identities=25% Similarity=0.414 Sum_probs=46.6
Q ss_pred CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050 3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (142)
Q Consensus 3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa 68 (142)
.+|..++|+|.++.. +|...+ . .+ ...||-|.+|..+.|||+|||+.....|+.-||.|
T Consensus 38 ~~~~~~~~~I~L~~~-~v~~~~-~----~~-k~~~F~I~~~~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 38 KQDEKAEGLIFLSGF-TIESAK-E----VK-KKYAFKVCHPVYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred CCCCccceEEEccCC-EEEEch-h----cC-CceEEEECCCCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 467789999999976 443321 1 22 56799999998789999999999999999999864
No 7
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=97.80 E-value=9.1e-05 Score=51.99 Aligned_cols=62 Identities=18% Similarity=0.208 Sum_probs=45.1
Q ss_pred CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHH
Q 043050 3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLH 66 (142)
Q Consensus 3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlr 66 (142)
.++..++|+|.++..+.|..++. ..+....-..+|.|.||.+ -|||+|||+...+.||..|+
T Consensus 44 ~~~~k~~g~I~L~~~~~v~~~~~-~~~~~~~~~~~f~i~t~~r-~y~l~A~s~ee~~~Wi~~I~ 105 (108)
T cd01266 44 SRKFKLEFVIDLESCSQVDPGLL-CTAGNCIFGYGFDIETIVR-DLYLVAKNEEEMTLWVNCIC 105 (108)
T ss_pred CCCCccceEEECCccEEEccccc-ccccCcccceEEEEEeCCc-cEEEEECCHHHHHHHHHHHH
Confidence 45678999999998655433311 1122222347899998754 89999999999999999886
No 8
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.71 E-value=0.00015 Score=46.76 Aligned_cols=53 Identities=30% Similarity=0.451 Sum_probs=43.2
Q ss_pred CcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050 7 TVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (142)
Q Consensus 7 ~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa 68 (142)
.++|.|.++.. +|...+. +..||.|-+|..+.|+|+|||......|+..||.|
T Consensus 39 ~~~~~i~l~~~-~~~~~~~--------~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 39 KPRGTILLSGA-VISEDDS--------DDKCFTIDTGGDKTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred CceEEEEeceE-EEEECCC--------CCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHhC
Confidence 78999999875 3444321 25799999999889999999999999999999864
No 9
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=97.66 E-value=0.00023 Score=49.50 Aligned_cols=61 Identities=16% Similarity=0.279 Sum_probs=45.8
Q ss_pred CCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050 4 NEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (142)
Q Consensus 4 ~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa 68 (142)
+|..+.|+|.++ +.+|..+|-.-. ..-..+||.|.||.+ -|||+|||+.....|+.-|+..
T Consensus 37 ~~~~~~~~I~L~-~~~v~~~~~~~~--~~~~~~~F~I~t~~r-t~~~~A~s~~e~~~Wi~ai~~~ 97 (100)
T cd01233 37 KDPVERGVINLS-TARVEHSEDQAA--MVKGPNTFAVCTKHR-GYLFQALSDKEMIDWLYALNPL 97 (100)
T ss_pred CCccEeeEEEec-ccEEEEccchhh--hcCCCcEEEEECCCC-EEEEEcCCHHHHHHHHHHhhhh
Confidence 467899999998 556665543210 011357999999865 6999999999999999999763
No 10
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.47 E-value=0.0004 Score=50.53 Aligned_cols=56 Identities=23% Similarity=0.309 Sum_probs=43.7
Q ss_pred CCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHH
Q 043050 5 EPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLH 66 (142)
Q Consensus 5 e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlr 66 (142)
|..++|+|.++.-.+|.-.. .. +-..+||-|.||. ..|||+|||+...+.|+.-|-
T Consensus 46 ~~~p~G~IdL~~~~~V~~~~-~~----~~~~~~f~I~tp~-R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 46 TTLPQGTIDMNQCTDVVDAE-AR----TGQKFSICILTPD-KEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred CcccceEEEccceEEEeecc-cc----cCCccEEEEECCC-ceEEEEeCCHHHHHHHHHHHH
Confidence 67899999998877765322 11 2247899999995 499999999999999998763
No 11
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.47 E-value=0.0006 Score=41.26 Aligned_cols=56 Identities=29% Similarity=0.516 Sum_probs=44.2
Q ss_pred CCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHH
Q 043050 6 PTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA 67 (142)
Q Consensus 6 ~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrA 67 (142)
..+++.|.++. ..|...+.+. -.-+||.|-+++.+.|+|+++|+.....|+..|+.
T Consensus 40 ~~~~~~i~l~~-~~v~~~~~~~-----~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 40 YKPKGSIPLSG-AEVEESPDDS-----GRKNCFEIRTPDGRSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred CCCcceEEcCC-CEEEECCCcC-----CCCcEEEEecCCCcEEEEEeCCHHHHHHHHHHHhc
Confidence 46777888777 5555544443 24589999999878999999999999999999875
No 12
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=97.45 E-value=0.00054 Score=48.48 Aligned_cols=61 Identities=16% Similarity=0.275 Sum_probs=46.3
Q ss_pred CCcceeEEeecCceeeeeccccCC-CCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHH
Q 043050 6 PTVKGTITFDENSTIAISPVNFNG-LPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA 67 (142)
Q Consensus 6 ~~~rg~I~fda~sTvtiSpvNfhg-~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrA 67 (142)
..++|.|.+...+.|...+.-..+ -.--+.|||-|.|+. ..|||.|+|+...+.|+..|+.
T Consensus 44 ~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~~-r~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 44 GSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHDE-GTLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred cCcceeEECCcceEEEEecCCcCcccccccCccEEEEeCC-CeEEEEcCCHHHHHHHHHHHHh
Confidence 479999999998777654433222 112357999999975 4799999999999999998874
No 13
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=97.28 E-value=0.00092 Score=46.51 Aligned_cols=52 Identities=19% Similarity=0.390 Sum_probs=41.0
Q ss_pred CCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHH
Q 043050 6 PTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLH 66 (142)
Q Consensus 6 ~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlr 66 (142)
..++|.|.+... .|.+ .+.|.|+|-|.++..+.|+|.||+|.....|+..|.
T Consensus 38 ~~~~G~I~L~~~---~i~~------~~~~~~~F~i~~~~~r~~~L~A~s~~e~~~Wi~al~ 89 (91)
T cd01247 38 HGCRGSIFLKKA---IIAA------HEFDENRFDISVNENVVWYLRAENSQSRLLWMDSVV 89 (91)
T ss_pred CCCcEEEECccc---EEEc------CCCCCCEEEEEeCCCeEEEEEeCCHHHHHHHHHHHh
Confidence 457999988753 2222 245679999988777899999999999999998874
No 14
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.07 E-value=0.0033 Score=44.85 Aligned_cols=59 Identities=17% Similarity=0.359 Sum_probs=43.4
Q ss_pred CCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccc--------------------eeeEEeecChHHHHHHHH
Q 043050 4 NEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQK--------------------KDYFLCAETPGAARAWVS 63 (142)
Q Consensus 4 ~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~k--------------------k~yfLcAETp~aAraWv~ 63 (142)
.|..++|.|.++. .+|...+-+ -.-.||-|-+|.. +-|||||||+.....|+.
T Consensus 35 ~~~~~~g~I~L~~-~~v~~~~~~------~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~ 107 (125)
T cd01252 35 TDKEPRGIIPLEN-VSIREVEDP------SKPFCFELFSPSDKQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIK 107 (125)
T ss_pred CCCCceEEEECCC-cEEEEcccC------CCCeeEEEECCccccccccccccccccccccCceEEEEECCCHHHHHHHHH
Confidence 4678999999993 334443221 1346998877764 567799999999999999
Q ss_pred HHHHHH
Q 043050 64 TLHAAQ 69 (142)
Q Consensus 64 tlrAa~ 69 (142)
.|+.+.
T Consensus 108 al~~~~ 113 (125)
T cd01252 108 SIKASI 113 (125)
T ss_pred HHHHHH
Confidence 998753
No 15
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=96.99 E-value=0.0057 Score=37.14 Aligned_cols=59 Identities=29% Similarity=0.448 Sum_probs=43.6
Q ss_pred CCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050 6 PTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (142)
Q Consensus 6 ~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa 68 (142)
..+.+.|.++.. .|...+-+-. .-...||.|.++..+.|+|.++|+.....|+..|+.+
T Consensus 42 ~~~~~~i~l~~~-~v~~~~~~~~---~~~~~~f~l~~~~~~~~~f~~~s~~~~~~W~~~i~~~ 100 (102)
T smart00233 42 YKPKGSIDLSGI-TVREAPDPDS---AKKPHCFEIKTADRRSYLLQAESEEEREEWVDALRKA 100 (102)
T ss_pred CCCceEEECCcC-EEEeCCCCcc---CCCceEEEEEecCCceEEEEcCCHHHHHHHHHHHHHh
Confidence 356677777776 5544433211 1235799999999889999999999999999999864
No 16
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.79 E-value=0.0077 Score=43.73 Aligned_cols=64 Identities=9% Similarity=0.072 Sum_probs=48.7
Q ss_pred CCCCCcceeEEeecCceeeeeccc------cCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHH
Q 043050 3 RNEPTVKGTITFDENSTIAISPVN------FNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA 67 (142)
Q Consensus 3 r~e~~~rg~I~fda~sTvtiSpvN------fhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrA 67 (142)
..|+.++|+|.||..-.|...-.- -..+.....++|-|-||.+ .|.|.++|....+.|+.-|.-
T Consensus 51 ~~~~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~R-~~~l~a~s~~~~~~Wi~~i~~ 120 (121)
T cd01254 51 PSSAQILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITNSNR-SLKLKCKSSRKLKQWMASIED 120 (121)
T ss_pred CCCCceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEcCCc-EEEEEeCCHHHHHHHHHHHHh
Confidence 356789999999999888754321 0011134579999999988 599999999999999987753
No 17
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.57 E-value=0.0073 Score=44.14 Aligned_cols=59 Identities=20% Similarity=0.226 Sum_probs=42.9
Q ss_pred CcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050 7 TVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (142)
Q Consensus 7 ~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa 68 (142)
+++|+|.++.-+||-...-- ...+-.-.||-|.||.+ -|||+|||+...++|+.-|.-|
T Consensus 42 ~~~g~IdL~~~~sVk~~~~~--~~~~~~~~~Fei~tp~r-t~~l~A~se~e~e~WI~~i~~a 100 (101)
T cd01264 42 PDDCSIDLSKIRSVKAVAKK--RRDRSLPKAFEIFTADK-TYILKAKDEKNAEEWLQCLNIA 100 (101)
T ss_pred CCCceEEcccceEEeecccc--ccccccCcEEEEEcCCc-eEEEEeCCHHHHHHHHHHHHhh
Confidence 34699999999976543100 00011247999999995 8999999999999999877543
No 18
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.44 E-value=0.011 Score=42.91 Aligned_cols=59 Identities=20% Similarity=0.377 Sum_probs=41.3
Q ss_pred CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccc-eeeEEeecChHHHHHHHHHHHH
Q 043050 3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQK-KDYFLCAETPGAARAWVSTLHA 67 (142)
Q Consensus 3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~k-k~yfLcAETp~aAraWv~tlrA 67 (142)
..|..|+|.|-+... .|-|+ |-...-.-.||-|.+|.. --||+|+++ .....|+..|++
T Consensus 38 ~~~~~p~gli~l~~~---~V~~v--~ds~~~r~~cFel~~~~~~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 38 PKKTKPIGLIDLSDA---YLYPV--HDSLFGRPNCFQIVERALPTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred CCCCCccceeecccc---EEEEc--cccccCCCeEEEEecCCCCeEEEEeCCH-HHHHHHHHHHhc
Confidence 356778886655444 33343 221111238999999876 789999999 999999999986
No 19
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=96.33 E-value=0.018 Score=41.56 Aligned_cols=53 Identities=17% Similarity=0.191 Sum_probs=43.4
Q ss_pred CCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHH
Q 043050 6 PTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTL 65 (142)
Q Consensus 6 ~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tl 65 (142)
..|+|+|.++.-.+|.-.| +.++ +.||=|-||.. -|+|.|||....+.|+..|
T Consensus 46 ~~p~~vI~L~~c~~v~~~~-----d~k~-~~~f~i~t~dr-~f~l~aese~E~~~Wi~~i 98 (101)
T cd01257 46 SAPKRVIPLESCFNINKRA-----DAKH-RHLIALYTRDE-YFAVAAENEAEQDSWYQAL 98 (101)
T ss_pred CCceEEEEccceEEEeecc-----cccc-CeEEEEEeCCc-eEEEEeCCHHHHHHHHHHH
Confidence 6799999999988776433 2332 58999999885 8999999999999999866
No 20
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=96.02 E-value=0.045 Score=33.26 Aligned_cols=33 Identities=27% Similarity=0.569 Sum_probs=29.2
Q ss_pred ceeEEecccc--ceeeEEeecChHHHHHHHHHHHH
Q 043050 35 GCCFYIGTPQ--KKDYFLCAETPGAARAWVSTLHA 67 (142)
Q Consensus 35 gCCfYIgt~~--kk~yfLcAETp~aAraWv~tlrA 67 (142)
.-||.|-++. ...|+|++||+..+..|+..|+-
T Consensus 64 ~~~F~i~~~~~~~~~~~~~~~~~~~~~~W~~al~~ 98 (99)
T cd00900 64 PNCFAIVTKDRGRRVFVFQADSEEEAQEWVEALQQ 98 (99)
T ss_pred CceEEEECCCCCcEEEEEEcCCHHHHHHHHHHHhc
Confidence 4599999886 88999999999999999998863
No 21
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.16 E-value=0.031 Score=38.13 Aligned_cols=33 Identities=21% Similarity=0.483 Sum_probs=30.4
Q ss_pred eeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050 36 CCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (142)
Q Consensus 36 CCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa 68 (142)
-+|.|-++..+.|+|+|+++.....|+..|+++
T Consensus 72 ~~F~l~~~~~~~~~f~a~s~e~~~~Wi~aL~~~ 104 (104)
T cd01253 72 HVFRLRLPDGAEFLFQAPDEEEMSSWVRALKSA 104 (104)
T ss_pred eEEEEEecCCCEEEEECCCHHHHHHHHHHHhcC
Confidence 699999999899999999999999999998763
No 22
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.10 E-value=0.087 Score=37.83 Aligned_cols=57 Identities=14% Similarity=0.024 Sum_probs=42.6
Q ss_pred CCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHH
Q 043050 6 PTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA 67 (142)
Q Consensus 6 ~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrA 67 (142)
..++|.|-+.....|-.-.-...+ ...||=|.||.+ -||+.|||+...+.|+.-|+-
T Consensus 41 ~~~~g~I~L~~i~~ve~v~~~~~~----~~~~fqivt~~r-~~yi~a~s~~E~~~Wi~al~k 97 (98)
T cd01244 41 CKKSALIKLAAIKGTEPLSDKSFV----NVDIITIVCEDD-TMQLQFEAPVEATDWLNALEK 97 (98)
T ss_pred CceeeeEEccceEEEEEcCCcccC----CCceEEEEeCCC-eEEEECCCHHHHHHHHHHHhc
Confidence 467888888877776533322111 246999999864 899999999999999998873
No 23
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.03 E-value=0.17 Score=35.34 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=30.3
Q ss_pred cceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050 34 DGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (142)
Q Consensus 34 DgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa 68 (142)
.-++|.|-+++ +.|.|+|+|+..=+.|+..|..+
T Consensus 65 ~~~~F~I~~~~-rsf~l~A~s~eEk~~W~~ai~~~ 98 (101)
T cd01219 65 RPHSFLVSGKQ-RCLELQARTQKEKNDWVQAIFSI 98 (101)
T ss_pred cCceEEEecCC-cEEEEEcCCHHHHHHHHHHHHHH
Confidence 46899998888 69999999999999999999765
No 24
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=93.00 E-value=0.39 Score=34.73 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=41.4
Q ss_pred eecCceeeeeccccCCCCCCcceeEEeccc-cc-eeeEEeecChHHHHHHHHHHHHHHH
Q 043050 14 FDENSTIAISPVNFNGLPKYDGCCFYIGTP-QK-KDYFLCAETPGAARAWVSTLHAAQL 70 (142)
Q Consensus 14 fda~sTvtiSpvNfhg~~kyDgCCfYIgt~-~k-k~yfLcAETp~aAraWv~tlrAa~l 70 (142)
|.=-+.|.+|-+.+-...+-|-|||+|... +. ..|-|+|-|+..=+.|+..|+.+-+
T Consensus 38 y~~K~~i~~~~l~i~e~~~~d~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i~ 96 (97)
T cd01222 38 YQFKAYIPCKNLMLVEHLPGEPLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAML 96 (97)
T ss_pred eEEEEEEEecceEEecCCCCCCcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHhh
Confidence 344456667766555555556799999544 22 4788999999999999999987644
No 25
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=92.73 E-value=0.26 Score=34.89 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=29.9
Q ss_pred CCcceeEEecccc---ceeeEEeecChHHHHHHHHHHHH
Q 043050 32 KYDGCCFYIGTPQ---KKDYFLCAETPGAARAWVSTLHA 67 (142)
Q Consensus 32 kyDgCCfYIgt~~---kk~yfLcAETp~aAraWv~tlrA 67 (142)
....|||-|..-. .+-+.|+|+++..|+.|+..|++
T Consensus 76 ~~e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 76 SLEERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred CccccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 4678999985443 46799999999999999999975
No 26
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=92.20 E-value=0.29 Score=34.96 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=28.7
Q ss_pred eeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050 36 CCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (142)
Q Consensus 36 CCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa 68 (142)
.||-|-+|++ .|.|+|+|+..-..|+.+|..+
T Consensus 65 ~~F~I~~~~k-s~~l~A~s~~Ek~~Wi~~i~~a 96 (99)
T cd01220 65 HCFTIFGGQC-AITVAASTRAEKEKWLADLSKA 96 (99)
T ss_pred eeEEEEcCCe-EEEEECCCHHHHHHHHHHHHHH
Confidence 6999998865 8999999999999999999775
No 27
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=90.83 E-value=0.59 Score=33.52 Aligned_cols=37 Identities=30% Similarity=0.395 Sum_probs=29.3
Q ss_pred CCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050 31 PKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (142)
Q Consensus 31 ~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa 68 (142)
..-+.+.|+|-||++ .|+|-+||...-.+|+..|++|
T Consensus 76 ~~~~~~~~~i~T~~k-t~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 76 GEIHLKVFSIFTPTK-TFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp SS-SSEEEEEE-SS--EEEEEESSHHHHHHHHHHHHH-
T ss_pred cCcCCCCcEEECCCc-EEEEEECCHHHHHHHHHHHHhC
Confidence 345678999988866 9999999999999999999765
No 28
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=88.81 E-value=1.3 Score=30.93 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=26.0
Q ss_pred CCCcceeEEec----cccceeeEEeecChHHHHHHHHHHHH
Q 043050 31 PKYDGCCFYIG----TPQKKDYFLCAETPGAARAWVSTLHA 67 (142)
Q Consensus 31 ~kyDgCCfYIg----t~~kk~yfLcAETp~aAraWv~tlrA 67 (142)
.+....||.|- ++...++| +|||+..-+.|+.-||.
T Consensus 61 ~~~~~~~F~i~~~~~~~~~~r~f-~a~s~ee~~eWi~ai~~ 100 (102)
T cd01241 61 ERPRPNTFIIRCLQWTTVIERTF-HVESPEEREEWIHAIQT 100 (102)
T ss_pred cCCCcceEEEEeccCCcccCEEE-EeCCHHHHHHHHHHHHh
Confidence 34556799996 22223455 68999999999998875
No 29
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=84.11 E-value=2.9 Score=31.05 Aligned_cols=50 Identities=22% Similarity=0.468 Sum_probs=39.7
Q ss_pred ceeeeeccccCCCCCCcceeEEe--cccc--ceeeEEeecChHHHHHHHHHHHH
Q 043050 18 STIAISPVNFNGLPKYDGCCFYI--GTPQ--KKDYFLCAETPGAARAWVSTLHA 67 (142)
Q Consensus 18 sTvtiSpvNfhg~~kyDgCCfYI--gt~~--kk~yfLcAETp~aAraWv~tlrA 67 (142)
+.|.+|-+.+--..+-|.|+|=| .+|. ...|-|-|-|+..=.+|+..||.
T Consensus 57 ~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~ 110 (114)
T cd01232 57 SKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKANSQETKQEWVKKIRE 110 (114)
T ss_pred cceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHH
Confidence 56667777666666678999976 6664 46788899999999999999985
No 30
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=81.86 E-value=2.6 Score=31.30 Aligned_cols=33 Identities=9% Similarity=0.414 Sum_probs=29.6
Q ss_pred eEEeccccceeeEEeecChHHHHHHHHHHHHHH
Q 043050 37 CFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ 69 (142)
Q Consensus 37 CfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~ 69 (142)
=|.|-+|-.++|+|-|.+...+..||..|+.+.
T Consensus 79 VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~ 111 (117)
T cd01230 79 VFRLRTADWREFLFQTSSLKELQSWIERINVVA 111 (117)
T ss_pred EEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHH
Confidence 488888988999999999999999999998753
No 31
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=80.49 E-value=11 Score=27.49 Aligned_cols=32 Identities=25% Similarity=0.470 Sum_probs=28.3
Q ss_pred eeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050 36 CCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (142)
Q Consensus 36 CCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa 68 (142)
.+|-|-+|+| -+.+.|||+..=+.|+..|..|
T Consensus 66 n~f~I~~~~k-Sf~v~A~s~~eK~eWl~~i~~a 97 (104)
T cd01218 66 NGWIIKTPTK-SFAVYAATETEKREWMLHINKC 97 (104)
T ss_pred ceEEEecCCe-EEEEEcCCHHHHHHHHHHHHHH
Confidence 7899999877 7888999999999999999654
No 32
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=79.73 E-value=4.3 Score=29.91 Aligned_cols=48 Identities=29% Similarity=0.740 Sum_probs=28.3
Q ss_pred CcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHH
Q 043050 7 TVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLH 66 (142)
Q Consensus 7 ~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlr 66 (142)
..||.|.++. ++++...|+. +|.|-||-+ .|+|.. ..+-|..|+..|-
T Consensus 49 ~~KGeI~~~~--~l~v~~k~~~--------~F~I~tp~R-tY~l~d-~~~~A~~W~~~I~ 96 (104)
T PF14593_consen 49 VLKGEIPWSK--ELSVEVKSFK--------TFFIHTPKR-TYYLED-PEGNAQQWVEAIE 96 (104)
T ss_dssp EEEEEE--ST--T-EEEECSSS--------EEEEEETTE-EEEEE--TTS-HHHHHHHHH
T ss_pred eECcEEecCC--ceEEEEccCC--------EEEEECCCc-EEEEEC-CCCCHHHHHHHHH
Confidence 3578888873 4444445543 799999944 555543 4455888998774
No 33
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=76.02 E-value=5.9 Score=29.81 Aligned_cols=60 Identities=15% Similarity=0.147 Sum_probs=38.7
Q ss_pred CCcceeEEeecCceeeeeccccCCCCCCcceeEEeccc-------------------cceeeEEeecChHHHHHHHHHHH
Q 043050 6 PTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTP-------------------QKKDYFLCAETPGAARAWVSTLH 66 (142)
Q Consensus 6 ~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~-------------------~kk~yfLcAETp~aAraWv~tlr 66 (142)
..|.|.|-++.-.+..+.+.. -+-....=.|.|-+. .+..|||.|||+..-..|++.|.
T Consensus 43 ~~Plg~I~L~~c~~~~v~~~~--r~~c~Rp~tF~i~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain 120 (122)
T cd01263 43 KGPTGLIDLSTCTSSEGASAV--RDICARPNTFHLDVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLN 120 (122)
T ss_pred CCceEEEEhhhCcccccccCC--hhhcCCCCeEEEEEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHh
Confidence 578899999887776663221 001111113666322 24468999999999999998875
Q ss_pred H
Q 043050 67 A 67 (142)
Q Consensus 67 A 67 (142)
-
T Consensus 121 ~ 121 (122)
T cd01263 121 S 121 (122)
T ss_pred c
Confidence 3
No 34
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=75.06 E-value=11 Score=27.39 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=27.2
Q ss_pred ceeEEeccccceeeEEeecChHHHHHHHHHHHH
Q 043050 35 GCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA 67 (142)
Q Consensus 35 gCCfYIgt~~kk~yfLcAETp~aAraWv~tlrA 67 (142)
-.||.|.|+.+ .+-|.++|....+.|+.-|+-
T Consensus 88 ~~si~i~t~~R-~L~l~a~s~~~~~~W~~aL~~ 119 (123)
T PF12814_consen 88 NKSIIIVTPDR-SLDLTAPSRERHEIWFNALRY 119 (123)
T ss_pred ceEEEEEcCCe-EEEEEeCCHHHHHHHHHHHHH
Confidence 35777788766 999999999999999998874
No 35
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=74.52 E-value=9.8 Score=29.25 Aligned_cols=55 Identities=24% Similarity=0.336 Sum_probs=38.5
Q ss_pred EeecCceeeeeccccCCCCCCcceeEEeccccc-eeeEEeecChHHHHHHHHHHHH
Q 043050 13 TFDENSTIAISPVNFNGLPKYDGCCFYIGTPQK-KDYFLCAETPGAARAWVSTLHA 67 (142)
Q Consensus 13 ~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~k-k~yfLcAETp~aAraWv~tlrA 67 (142)
.+-=-+.|.+|-+.+--..+-|.|+|=|-+... ..|-|.|-|+..=.+|+..||.
T Consensus 58 ~Y~yK~~ikls~lglte~v~gd~~kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~~ 113 (133)
T cd01227 58 SYSFKQSLKMTAVGITENVKGDTKKFEIWYNAREEVYILQAPTPEIKAAWVNEIRK 113 (133)
T ss_pred eEEEeeeEEeecccccccCCCCccEEEEEeCCCCcEEEEEcCCHHHHHHHHHHHHH
Confidence 344445566666555555557899997633333 3566789999999999999986
No 36
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=72.52 E-value=23 Score=26.61 Aligned_cols=62 Identities=10% Similarity=0.133 Sum_probs=48.8
Q ss_pred CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEecccc---ceeeEEeecChHHHHHHHHHHHHH
Q 043050 3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQ---KKDYFLCAETPGAARAWVSTLHAA 68 (142)
Q Consensus 3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~---kk~yfLcAETp~aAraWv~tlrAa 68 (142)
+.|..+.|+|.+.--..+-...+|+-+.+ =||=+.+|. ..+|+|.+||...=..|++-+|-|
T Consensus 38 kee~~~~p~i~lnl~gcev~~dv~~~~~k----f~I~l~~ps~~~~r~y~l~cdsEeqya~Wmaa~rla 102 (106)
T cd01237 38 KEDSNGAPIGQLNLKGCEVTPDVNVAQQK----FHIKLLIPTAEGMNEVWLRCDNEKQYAKWMAACRLA 102 (106)
T ss_pred chhcCCCCeEEEecCceEEcccccccccc----eEEEEecCCccCCeEEEEECCCHHHHHHHHHHHHHh
Confidence 34567788898888888888888887663 455557775 358999999999999999998865
No 37
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=71.98 E-value=23 Score=27.21 Aligned_cols=56 Identities=23% Similarity=0.319 Sum_probs=41.8
Q ss_pred EEeecCceeeeeccc----cCCCCCCcceeEEecccc-ceeeEEeecChHHHHHHHHHHHH
Q 043050 12 ITFDENSTIAISPVN----FNGLPKYDGCCFYIGTPQ-KKDYFLCAETPGAARAWVSTLHA 67 (142)
Q Consensus 12 I~fda~sTvtiSpvN----fhg~~kyDgCCfYIgt~~-kk~yfLcAETp~aAraWv~tlrA 67 (142)
..||-.-.+.++||+ .|-.++-=-|=|=|-+.. ...++|.|||...=+-||.-|+.
T Consensus 48 ~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I~~~~~~~~lllLA~s~~ek~kWV~~L~~ 108 (112)
T cd01242 48 MILDIDKLFHVRPVTQGDVYRADAKEIPKIFQILYANEARDLLLLAPQTDEQNKWVSRLVK 108 (112)
T ss_pred EEEEccceeeeecccHHHeeecCcccCCeEEEEEeCCccceEEEEeCCchHHHHHHHHHHH
Confidence 345655688888887 455566566777775554 36789999999999999998863
No 38
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=68.29 E-value=12 Score=26.91 Aligned_cols=34 Identities=15% Similarity=0.390 Sum_probs=28.0
Q ss_pred cceeEEeccccceeeEEeecChHHHHHHHHHHHH
Q 043050 34 DGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA 67 (142)
Q Consensus 34 DgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrA 67 (142)
.-.+|.+-|+.-.+|.|-++++.....|+..|..
T Consensus 83 r~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~ 116 (119)
T PF15410_consen 83 RKNVFRLRTADGSEYLFQASDEEEMNEWIDAINY 116 (119)
T ss_dssp CSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhh
Confidence 4679999999999999999999999999999853
No 39
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=67.72 E-value=7 Score=30.12 Aligned_cols=32 Identities=25% Similarity=0.589 Sum_probs=23.6
Q ss_pred eEEecccc--c---ee-eEEeecChHHHHHHHHHHHHH
Q 043050 37 CFYIGTPQ--K---KD-YFLCAETPGAARAWVSTLHAA 68 (142)
Q Consensus 37 CfYIgt~~--k---k~-yfLcAETp~aAraWv~tlrAa 68 (142)
||+|=-|+ . ++ -+||||....-+.|++-+|=+
T Consensus 70 ~F~~K~~~~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~ 107 (114)
T cd01259 70 CFGFKAVGDQSKGSQSIKYLCAEDLPTLDRWLTAIRIA 107 (114)
T ss_pred eEEEeccccCcccchhheeeccCCHHHHHHHHHHHHHH
Confidence 77774332 2 12 368999999999999999864
No 40
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=67.59 E-value=13 Score=27.67 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=28.8
Q ss_pred ceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050 35 GCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (142)
Q Consensus 35 gCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa 68 (142)
-+.|+|.+.+.+-+-|||.|+..=..|...+-.+
T Consensus 75 knaF~I~~~~~~s~~l~Akt~eeK~~Wm~~l~~~ 108 (112)
T cd01261 75 KNAFEIILKDGNSVIFSAKNAEEKNNWMAALISV 108 (112)
T ss_pred CceEEEEcCCCCEEEEEECCHHHHHHHHHHHHHH
Confidence 5789998865668999999999999999887554
No 41
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=60.34 E-value=15 Score=31.23 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=27.4
Q ss_pred eEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050 37 CFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (142)
Q Consensus 37 CfYIgt~~kk~yfLcAETp~aAraWv~tlrAa 68 (142)
||-|-|-..+++|+.+||+..-..|+..|+.+
T Consensus 444 ~~~i~~~~~~~~~~~~~~~~~~~~W~~~~~~~ 475 (478)
T PTZ00267 444 QLVLWFNNGQKIIAYAKTAEDRDQWISKFQRA 475 (478)
T ss_pred eEEEEecCCcEEEEecCChHHHHHHHHHHHHH
Confidence 47777767779999999999999999999864
No 42
>PF15409 PH_8: Pleckstrin homology domain
Probab=57.20 E-value=29 Score=25.14 Aligned_cols=55 Identities=25% Similarity=0.364 Sum_probs=38.2
Q ss_pred CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050 3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (142)
Q Consensus 3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa 68 (142)
.+|.+.||.|.+- .+ .||. | -+.|||-|-+--+ -|.|=|.++.....||..|+.+
T Consensus 34 ~~~~~~rGsi~v~-~a--~is~-~------~~~~~I~idsg~~-i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 34 QNSGKLRGSIDVS-LA--VISA-N------KKSRRIDIDSGDE-IWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred CCCCeeEeEEEcc-ce--EEEe-c------CCCCEEEEEcCCe-EEEEEcCCHHHHHHHHHHHHhc
Confidence 3455678877432 12 2222 2 2578999966544 7899999999999999999865
No 43
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=50.69 E-value=41 Score=24.74 Aligned_cols=50 Identities=26% Similarity=0.539 Sum_probs=32.9
Q ss_pred CcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHH
Q 043050 7 TVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA 67 (142)
Q Consensus 7 ~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrA 67 (142)
..||.|-... +...+..+|++ .|+|-||-+ .|+|. +--+-|..|+..+-.
T Consensus 37 ~~KgeIp~s~-~~l~v~~~~~~--------~F~I~Tp~r-ty~le-D~~~~a~~W~~~I~~ 86 (89)
T cd01262 37 VVKGEIPWSD-VELRVEVKNSS--------HFFVHTPNK-VYSFE-DPKGRASQWKKAIED 86 (89)
T ss_pred eEEeEecccc-cceEEEEecCc--------cEEEECCCc-eEEEE-CCCCCHHHHHHHHHH
Confidence 4567776665 23445666663 599999988 66662 334678889987644
No 44
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=50.37 E-value=33 Score=25.46 Aligned_cols=35 Identities=11% Similarity=0.102 Sum_probs=28.9
Q ss_pred CcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050 33 YDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (142)
Q Consensus 33 yDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa 68 (142)
+-.=+|=|.||+++.. ..||||..=++|...|+-|
T Consensus 63 ~~kNafki~t~~~s~i-~qaes~~~K~eWl~~le~a 97 (100)
T cd01226 63 NAKKVLKLLIFPESRI-YQCESARIKTEWFEELEQA 97 (100)
T ss_pred CcCceEEEEeCCccEE-EEeCCHHHHHHHHHHHHHH
Confidence 3456899999999665 5689999999999999755
No 45
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=42.38 E-value=13 Score=38.65 Aligned_cols=61 Identities=23% Similarity=0.406 Sum_probs=49.0
Q ss_pred CCCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHH
Q 043050 2 RRNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA 67 (142)
Q Consensus 2 ~r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrA 67 (142)
++-|.+|+|.|.+-+.-+|++ .|.+..|-=-|+=.---++-|-|||+-.-.|..|+.-|.+
T Consensus 1669 ~~edt~pkG~IdLaevesv~~-----~~~k~vdekgffdlktt~rvynf~a~nin~AqqWve~iqs 1729 (1732)
T KOG1090|consen 1669 DFEDTKPKGCIDLAEVESVAL-----IGPKTVDEKGFFDLKTTNRVYNFCAQNINLAQQWVECIQS 1729 (1732)
T ss_pred ccccccccchhhhhhhhhhcc-----cCccccCccceeeeehhhHHHHHHhccchHHHHHHHHHHH
Confidence 467899999999999888876 6666677666666555566788999999999999988754
No 46
>TIGR03485 cas_csx13_N CRISPR-associated protein, Cas_csx13 family. Members of this family are found among cas (CRISPR-Associated) genes close to CRISPR repeats in Leptospira interrogans (a spirochete), Myxococcus xanthus (a delta-proteobacterium), and Lyngbya sp. PCC 8106 (a cyanobacterium). It is found with other cas genes in Anabaena variabilis ATCC 29413. In Lyngbya sp., the protein is split into two tandem genes. This model corresponds to the N-terminal region or upstream gene; the C-terminal region is described by TIGR03486. CRISPR/cas systems are associated with prokaryotic acquired resistance to phage and other exogenous DNA.
Probab=33.62 E-value=52 Score=29.26 Aligned_cols=34 Identities=12% Similarity=0.262 Sum_probs=29.7
Q ss_pred cceeEEeccccceeeEEeecChHHHHHHHHHHHH
Q 043050 34 DGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA 67 (142)
Q Consensus 34 DgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrA 67 (142)
-|||+|+.-|++..|-++.--+.-.++|+.-.++
T Consensus 197 vaC~yy~l~~~k~~y~vVIPei~nLe~~a~~r~~ 230 (316)
T TIGR03485 197 VACSYYELRPSRGTYAIVIPELTDLETFARFRRD 230 (316)
T ss_pred hheEEEEecccccceEEEecccccHHHHHHHHHH
Confidence 3899999999999999999999999999877653
No 47
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=32.08 E-value=43 Score=32.83 Aligned_cols=41 Identities=27% Similarity=0.263 Sum_probs=32.5
Q ss_pred CcceeEEeccc-cceeeEEeecChHHHHHHHHHHHHHHHHHH
Q 043050 33 YDGCCFYIGTP-QKKDYFLCAETPGAARAWVSTLHAAQLVLK 73 (142)
Q Consensus 33 yDgCCfYIgt~-~kk~yfLcAETp~aAraWv~tlrAa~lVlk 73 (142)
-.+|||-|.+- +.+-+.|.|-|...|.-||+.||......+
T Consensus 85 ~~~~~fsi~~~~~~e~ldl~a~s~~~a~~wV~gl~~l~s~~~ 126 (746)
T KOG0169|consen 85 PEDRCFSIIFKDRYESLDLIANSKEDANIWVSGLRKLISRSK 126 (746)
T ss_pred CcceeEEEEeccccccccccCCCHHHHHHHhhhHHHHHhccc
Confidence 35799999884 344567899999999999999988666555
No 48
>TIGR00648 recU recombination protein U. The Bacillus protein has been shown to be required for DNA recombination and repair. RJD 11/20/00
Probab=31.65 E-value=37 Score=27.33 Aligned_cols=49 Identities=22% Similarity=0.402 Sum_probs=31.5
Q ss_pred EEeecCce--ee-eeccccCCC--------CCCcceeEEe-ccccceeeEEeecChHHHHHH
Q 043050 12 ITFDENST--IA-ISPVNFNGL--------PKYDGCCFYI-GTPQKKDYFLCAETPGAARAW 61 (142)
Q Consensus 12 I~fda~sT--vt-iSpvNfhg~--------~kyDgCCfYI-gt~~kk~yfLcAETp~aAraW 61 (142)
|-|||-+| -+ +.=.|+|-- .+..|+||.| .+....++||+ .-...-+-|
T Consensus 69 i~FEAKeT~~k~~fpl~nI~~HQi~~L~~~~~~gGiaF~iI~F~~~~e~y~v-~~~~l~~~w 129 (169)
T TIGR00648 69 IDFEAKETKNKTSFPLQNIHDHQIEHMKQVKQQDGICFLIISFQTFDQVYFL-EADKLFYFW 129 (169)
T ss_pred EEEEccccCCCCceehhhCCHHHHHHHHHHHHCCCEEEEEEEEeecCeEEEE-EHHHHHHHH
Confidence 77999888 23 555577743 4789999988 45556677774 333334445
No 49
>PF15396 FAM60A: Protein Family FAM60A
Probab=31.47 E-value=25 Score=29.66 Aligned_cols=18 Identities=33% Similarity=0.826 Sum_probs=15.3
Q ss_pred ccCCCCCC---cceeEEeccc
Q 043050 26 NFNGLPKY---DGCCFYIGTP 43 (142)
Q Consensus 26 Nfhg~~ky---DgCCfYIgt~ 43 (142)
|||+-+-| +|||++=.-+
T Consensus 2 ~FHKPkvYRS~~GCCICrAKS 22 (213)
T PF15396_consen 2 SFHKPKVYRSADGCCICRAKS 22 (213)
T ss_pred CCCCCceeeccCceEeeeccc
Confidence 79998888 8999998655
No 50
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=30.99 E-value=96 Score=23.24 Aligned_cols=29 Identities=31% Similarity=0.596 Sum_probs=25.0
Q ss_pred eEEeccccc-eeeEEeecChHHHHHHHHHH
Q 043050 37 CFYIGTPQK-KDYFLCAETPGAARAWVSTL 65 (142)
Q Consensus 37 CfYIgt~~k-k~yfLcAETp~aAraWv~tl 65 (142)
||.|-|.+. ...+|-.||++....|-.-+
T Consensus 76 ~F~irtg~~vesh~fsVEt~~dL~~W~rai 105 (108)
T cd01258 76 CFLIRTGTQVENHYLRVETHRDLASWERAL 105 (108)
T ss_pred EEEEEcCCceeeEEEEecCHHHHHHHHHHH
Confidence 899988877 78889999999999997544
No 51
>PHA02949 Hypothetical protein; Provisional
Probab=28.48 E-value=27 Score=24.84 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=16.4
Q ss_pred cceeEEeccccceeeEEeec
Q 043050 34 DGCCFYIGTPQKKDYFLCAE 53 (142)
Q Consensus 34 DgCCfYIgt~~kk~yfLcAE 53 (142)
-||||-|--|++++.+|--.
T Consensus 34 YG~clnIKk~sk~e~~L~Nd 53 (65)
T PHA02949 34 YGHSFNVKRFTNEEMCLKND 53 (65)
T ss_pred hceeeeecccccchhhhccC
Confidence 39999999999999887433
No 52
>PRK02234 recU Holliday junction-specific endonuclease; Reviewed
Probab=27.79 E-value=39 Score=27.66 Aligned_cols=40 Identities=28% Similarity=0.439 Sum_probs=27.0
Q ss_pred EEeecCce--ee-eeccccCCC--------CCCcceeEEe-ccccceeeEEe
Q 043050 12 ITFDENST--IA-ISPVNFNGL--------PKYDGCCFYI-GTPQKKDYFLC 51 (142)
Q Consensus 12 I~fda~sT--vt-iSpvNfhg~--------~kyDgCCfYI-gt~~kk~yfLc 51 (142)
|-|||-+| -+ +.=.|+|-- .+..|+||.| .+....++||+
T Consensus 92 i~FEAKeT~~k~~fpl~nI~~HQi~~L~~~~~~gGiaF~iI~F~~~~e~y~v 143 (195)
T PRK02234 92 IDFEAKETKNKTSFPLKNFHEHQIEHMKQVLKQGGICFVIIRFSTLDETYLL 143 (195)
T ss_pred EEEEccccCCCCccchhhCCHHHHHHHHHHHHCCCEEEEEEEEEeCCeEEEE
Confidence 67999888 22 444577643 3789999998 45555566664
No 53
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=27.36 E-value=1.1e+02 Score=29.68 Aligned_cols=43 Identities=33% Similarity=0.554 Sum_probs=34.7
Q ss_pred CcceeEEeccccceeeEEeecChHHHHHHHHHHHHHHHHHHHhhhH
Q 043050 33 YDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEA 78 (142)
Q Consensus 33 yDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~lVlkAHkeA 78 (142)
+.-+||=|.+ +.|-|-|=||+-..-.+|++.|... ++.++..+
T Consensus 333 drr~CF~iiS-~tks~~lQAes~~d~~~Wi~~i~ns--i~s~l~~~ 375 (785)
T KOG0521|consen 333 DRRFCFEIIS-PTKSYLLQAESEKDCQDWISALQNS--ILSALNSA 375 (785)
T ss_pred cceeeEEEec-CCcceEEecCchhHHHHHHHHHHHH--HHHHHhcc
Confidence 6778999999 5669999999999999999999874 33444444
No 54
>PF13227 DUF4035: Protein of unknown function (DUF4035)
Probab=26.40 E-value=50 Score=22.47 Aligned_cols=13 Identities=31% Similarity=0.567 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHH
Q 043050 60 AWVSTLHAAQLVL 72 (142)
Q Consensus 60 aWv~tlrAa~lVl 72 (142)
-|+.|+|+||++-
T Consensus 11 ~~R~D~~~Aqia~ 23 (53)
T PF13227_consen 11 DWRGDYRAAQIAA 23 (53)
T ss_pred hHHHHHHHHHHHH
Confidence 5999999999875
No 55
>PF15417 DUF4624: Domain of unknown function (DUF4624)
Probab=25.92 E-value=35 Score=27.13 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=17.8
Q ss_pred CceeeeeccccCCCCCCcce
Q 043050 17 NSTIAISPVNFNGLPKYDGC 36 (142)
Q Consensus 17 ~sTvtiSpvNfhg~~kyDgC 36 (142)
.-|++||-.|.+++++|+-|
T Consensus 86 ~dt~tisL~nlqk~kEY~V~ 105 (132)
T PF15417_consen 86 GDTFTISLNNLQKEKEYVVC 105 (132)
T ss_pred cceEEEEhhhcccCceEEEE
Confidence 34899999999999999976
No 56
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=24.90 E-value=2.4e+02 Score=20.51 Aligned_cols=14 Identities=36% Similarity=0.330 Sum_probs=8.4
Q ss_pred cChHHHHHHHHHHH
Q 043050 53 ETPGAARAWVSTLH 66 (142)
Q Consensus 53 ETp~aAraWv~tlr 66 (142)
|.+..++++...++
T Consensus 181 ~~~~~~~~~~~~~~ 194 (248)
T PF02913_consen 181 EEPERAEALWDELY 194 (248)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55666666666663
No 57
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]. In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.
Probab=23.99 E-value=81 Score=16.99 Aligned_cols=13 Identities=23% Similarity=0.634 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHh
Q 043050 109 KEIEAAMQISLRN 121 (142)
Q Consensus 109 k~iqaam~is~r~ 121 (142)
.+||.|++.|+.-
T Consensus 5 ~~L~~Al~~S~~e 17 (18)
T PF02809_consen 5 EDLQRALEMSLEE 17 (18)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcc
Confidence 4688888888863
No 58
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=23.88 E-value=54 Score=25.09 Aligned_cols=18 Identities=39% Similarity=0.442 Sum_probs=13.0
Q ss_pred ccCCCC---CCcceeEEeccc
Q 043050 26 NFNGLP---KYDGCCFYIGTP 43 (142)
Q Consensus 26 Nfhg~~---kyDgCCfYIgt~ 43 (142)
||..+- .||||+||=..|
T Consensus 32 nF~~L~~~~~Y~~~~f~Rvi~ 52 (171)
T cd01925 32 NFIQLCLEGYYDNTIFHRVVP 52 (171)
T ss_pred HHHHHHhcCCCCCCEEEEEcC
Confidence 776543 599999996544
No 59
>PF04668 Tsg: Twisted gastrulation (Tsg) protein conserved region; InterPro: IPR006761 Tsg was identified in Drosophila melanogaster as being required to specify the dorsal-most structures in the embryo, for example the amnioserosa. Biochemical experiments have revealed three key properties of Tsg: it can synergistically inhibit Dpp/BMP action in both D. melanogaster and vertebrates by forming a tripartite complete between itself, SOG/chordin and a BMP ligand; Tsg seems to enhance the Tld/BMP-1-mediated cleavage rate of SOG/chordin and may change the preference of site utilisation; Tsg can promote the dissociation of chordin cysteine-rich-containing fragments from the ligand to inhibit BMP signalling [, ].
Probab=23.72 E-value=24 Score=27.71 Aligned_cols=14 Identities=50% Similarity=1.270 Sum_probs=10.6
Q ss_pred CCCCC----cceeEEecc
Q 043050 29 GLPKY----DGCCFYIGT 42 (142)
Q Consensus 29 g~~ky----DgCCfYIgt 42 (142)
|..+| ||||=+||-
T Consensus 98 GAssYRWFHdgCCECVG~ 115 (132)
T PF04668_consen 98 GASSYRWFHDGCCECVGP 115 (132)
T ss_pred CcccceeeccchhhccCc
Confidence 55554 999999984
No 60
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=23.29 E-value=59 Score=23.02 Aligned_cols=24 Identities=25% Similarity=0.735 Sum_probs=14.9
Q ss_pred eeeeeccccCCCCCC---cceeEEecc
Q 043050 19 TIAISPVNFNGLPKY---DGCCFYIGT 42 (142)
Q Consensus 19 TvtiSpvNfhg~~ky---DgCCfYIgt 42 (142)
++.|..+-++|-|.+ .||+.||-.
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I 31 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEI 31 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEE
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEE
Confidence 455555556666655 489999943
No 61
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=23.14 E-value=2.3e+02 Score=21.31 Aligned_cols=63 Identities=14% Similarity=0.342 Sum_probs=44.3
Q ss_pred CCCCCCcceeEEeecC---ceeeeeccccCCCCCCcceeEEe--------------ccccceeeEEeecChHHHHHHHHH
Q 043050 2 RRNEPTVKGTITFDEN---STIAISPVNFNGLPKYDGCCFYI--------------GTPQKKDYFLCAETPGAARAWVST 64 (142)
Q Consensus 2 ~r~e~~~rg~I~fda~---sTvtiSpvNfhg~~kyDgCCfYI--------------gt~~kk~yfLcAETp~aAraWv~t 64 (142)
.|+.+++|..-.|+|. -++.--+.+ +..+|+ |+.|| +.-+.|.|-+++.|+-.-.+|..-
T Consensus 13 ~~~~rK~R~~FLFnDlLvc~~ik~~~~~--k~~kY~-~~w~IPL~dl~~~~~~~~~~~~~~KSf~~~asS~~Er~eW~~h 89 (96)
T cd01228 13 VEGSRKLRHLFLFTDVLLCAKLKKTSRG--KHQQYD-CKWYIPLADLSFPSEPFRIHNKNGKSYTFLLSSDYERSEWRES 89 (96)
T ss_pred hhCCCcceEEEeeccEEEEEEeeeccCc--cccccc-eeEEEEhHHheecchhhhccccCCceEEEEecCHHHHHHHHHH
Confidence 5788899999999983 333221222 225665 67776 222577899999999999999998
Q ss_pred HHH
Q 043050 65 LHA 67 (142)
Q Consensus 65 lrA 67 (142)
|+-
T Consensus 90 I~~ 92 (96)
T cd01228 90 IQK 92 (96)
T ss_pred HHH
Confidence 865
No 62
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=22.80 E-value=83 Score=28.13 Aligned_cols=67 Identities=25% Similarity=0.416 Sum_probs=42.0
Q ss_pred CcceeEEeccc---cceeeEEeecChHHHHHHHHHHHHHHHHHHHhhh---HhhhcCCCCccc-c--chhhHHHHhhh
Q 043050 33 YDGCCFYIGTP---QKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKE---AVNSLSGNGSAK-L--GTVATVVAAAN 101 (142)
Q Consensus 33 yDgCCfYIgt~---~kk~yfLcAETp~aAraWv~tlrAa~lVlkAHke---Avn~lsgng~~k-L--g~VAtvVAaAN 101 (142)
---||| |.| ..|+|-|...++..++.|+.+||.-.--+...|. =+|=-||+|.++ . ..|......++
T Consensus 68 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~g 143 (481)
T PLN02958 68 GGICCR--GSAGALARKDFVFEPLSDESRRLWCQKLRDYLDSLGRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDAD 143 (481)
T ss_pred Cccccc--CCCCCceeeeEEEeCCCHHHHHHHHHHHHHHHhhccCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcC
Confidence 345777 444 5678988888999999999999983221111121 266678888643 2 34554555443
No 63
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=22.54 E-value=28 Score=27.14 Aligned_cols=30 Identities=23% Similarity=0.595 Sum_probs=23.3
Q ss_pred ccCCCCCCcceeEEeccccceeeEEeecChH
Q 043050 26 NFNGLPKYDGCCFYIGTPQKKDYFLCAETPG 56 (142)
Q Consensus 26 Nfhg~~kyDgCCfYIgt~~kk~yfLcAETp~ 56 (142)
.|..+.. .-||+=||.|...+++||-....
T Consensus 109 ~l~~L~~-~~CrwPiGdp~~~~f~FCG~~~~ 138 (162)
T PF07750_consen 109 TLLELTE-GTCRWPIGDPGEPDFHFCGAPTQ 138 (162)
T ss_pred ChhhCCc-CCccCcCCCCCCCCccccCCcCC
Confidence 4554443 68999999999999999987643
No 64
>TIGR01728 SsuA_fam ABC transporter, substrate-binding protein, aliphatic sulfonates family. Members of this family are substrate-binding periplasmic proteins of ABC transporters. This subfamily includes SsuA, a member of a transporter operon needed to obtain sulfur from aliphatic sulfonates. Related proteins outside the scope of this model include taurine (NH2-CH2-CH2-S03H) binding proteins, the probable sulfate ester binding protein AtsR, and the probable aromatic sulfonate binding protein AsfC. All these families make sulfur available when Cys and sulfate levels are low. Please note that phylogenetic analysis by neighbor-joining suggests that a number of sequences belonging to this family have been excluded because of scoring lower than taurine-binding proteins.
Probab=21.25 E-value=2e+02 Score=21.33 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=29.6
Q ss_pred ceeEEeccccceeeEEeecChHHHHHHHHHHHHHHHHHHHhhh-HhhhcCC
Q 043050 35 GCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKE-AVNSLSG 84 (142)
Q Consensus 35 gCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~lVlkAHke-Avn~lsg 84 (142)
-||+++.++. +..|-|..+++++.-+..+..-..+|.+ ++..++.
T Consensus 182 ~~~~~~~~~~-----~~~~~p~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~ 227 (288)
T TIGR01728 182 QPGFLVVRRE-----FAEAHPEQVQRVLKVLVKARKWAEENPEESAKILAK 227 (288)
T ss_pred cceEEEECHH-----HHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
Confidence 3777664432 1357799999999888777776777765 4444443
Done!