BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043051
(845 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 276 bits (707), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 184/461 (39%), Positives = 260/461 (56%), Gaps = 40/461 (8%)
Query: 303 VTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGE 362
VTF D G E EL+E+V LK+ +F G PKG+LL GPPGTGKTLLA+A+AGE
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72
Query: 363 AGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGG 422
A VPFF +G+DFVE+FVGV A+RV+DLFA A++ AP I+FIDEIDA+G RG +GGG
Sbjct: 73 ANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGA-GLGGG 131
Query: 423 GAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDG 482
EREQ L Q+L EMDGF S ++V+ ATNR DILDPALLR GRFDK + V P G
Sbjct: 132 HDEREQTLNQLLVEMDGFD-SKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLG 190
Query: 483 RFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDLDYIGQ 542
R IL++H RNK +DV L+ IA+ T F GA+L+N++NEA +L AR+ D I
Sbjct: 191 RKKILEIHTRNKPL----AEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITM 246
Query: 543 EELLEALKRQKGTFETGQEDSTDIPEELKLRLAYREAAVAVLACHLPDPYRPIIETDI-- 600
++ EA+ R S I K +AY EA AV++ +P+ P+ I
Sbjct: 247 KDFEEAIDR---VIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNG-EPVHRISIIP 302
Query: 601 KSIRSQPNMRYAEISGRVFSRKNDYLNAIVRACAPRVIEEQMFGIDNMCWISSKATLD-- 658
+ ++ + + +N+ L+ + R EE +FG ++S A D
Sbjct: 303 RGYKALGYTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFG-----DVTSGAANDIE 357
Query: 659 -ASRLAEFLILQTGMT------AFGK-----------AYYRNQSDLVPNLATKLEALRDE 700
A+ +A ++ Q GM+ A+GK RN S+ V A+K++ +
Sbjct: 358 RATEIARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEV---ASKIDEEVKK 414
Query: 701 YMRFAVEKCASVLREYHSAVETITDILLEKGEIKAEEIWDI 741
+ E+ ++R+Y ++ I +ILLEK I+ +E+ I
Sbjct: 415 IVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRI 455
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 275 bits (702), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 183/461 (39%), Positives = 259/461 (56%), Gaps = 40/461 (8%)
Query: 303 VTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGE 362
VTF D G E EL+E+V LK+ +F G PKG+LL GPPGTG TLLA+A+AGE
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGE 72
Query: 363 AGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGG 422
A VPFF +G+DFVE+FVGV A+RV+DLFA A++ AP I+FIDEIDA+G RG +GGG
Sbjct: 73 ANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGA-GLGGG 131
Query: 423 GAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDG 482
EREQ L Q+L EMDGF S ++V+ ATNR DILDPALLR GRFDK + V P G
Sbjct: 132 HDEREQTLNQLLVEMDGFD-SKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLG 190
Query: 483 RFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDLDYIGQ 542
R IL++H RNK +DV L+ IA+ T F GA+L+N++NEA +L AR+ D I
Sbjct: 191 RKKILEIHTRNKPL----AEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITM 246
Query: 543 EELLEALKRQKGTFETGQEDSTDIPEELKLRLAYREAAVAVLACHLPDPYRPIIETDI-- 600
++ EA+ R S I K +AY EA AV++ +P+ P+ I
Sbjct: 247 KDFEEAIDR---VIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNG-EPVHRISIIP 302
Query: 601 KSIRSQPNMRYAEISGRVFSRKNDYLNAIVRACAPRVIEEQMFGIDNMCWISSKATLD-- 658
+ ++ + + +N+ L+ + R EE +FG ++S A D
Sbjct: 303 RGYKALGYTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFG-----DVTSGAANDIE 357
Query: 659 -ASRLAEFLILQTGMT------AFGK-----------AYYRNQSDLVPNLATKLEALRDE 700
A+ +A ++ Q GM+ A+GK RN S+ V A+K++ +
Sbjct: 358 RATEIARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEV---ASKIDEEVKK 414
Query: 701 YMRFAVEKCASVLREYHSAVETITDILLEKGEIKAEEIWDI 741
+ E+ ++R+Y ++ I +ILLEK I+ +E+ I
Sbjct: 415 IVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRI 455
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 254 bits (649), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 137/253 (54%), Positives = 168/253 (66%), Gaps = 4/253 (1%)
Query: 299 ETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKA 358
E V F D AG E K E+ EIV LK E + N G PKGVLL GPPGTGKTLLAKA
Sbjct: 4 EKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKA 63
Query: 359 IAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPD 418
+AGEA VPFF+ G+ F+EMFVG+ ASRV+DLF +A+ APSIIFIDEIDAIG R
Sbjct: 64 VAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGG 123
Query: 419 IGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLP 478
+ G EREQ L Q+L EMDGF + V+V+ ATNR +ILDPAL+R GRFD+ V V P
Sbjct: 124 VVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKP 183
Query: 479 SKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDLD 538
+GR ILKVH + + DV LQE+A+LT GA+L NI+NEA +L R +
Sbjct: 184 DFNGRVEILKVHIKGVKLAN----DVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQK 239
Query: 539 YIGQEELLEALKR 551
+ Q+ L EA++R
Sbjct: 240 EVRQQHLKEAVER 252
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 239 bits (610), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 193/480 (40%), Positives = 262/480 (54%), Gaps = 41/480 (8%)
Query: 286 SLGKSRAKFISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLH 345
S KSRA+ ++ E VTF D AG E K EL+EIV LKN F G PKGVLL
Sbjct: 22 SFTKSRARVLT--EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLV 79
Query: 346 GPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFID 405
GPPG GKT LA+A+AGEA VPF A+G+DFVEMFVGV A+RV+DLF +A+ AP I+FID
Sbjct: 80 GPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFID 139
Query: 406 EIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLR 465
EIDA+G KRG +GGG EREQ L Q+L EMDGF+ T+ ++V+ ATNR DILDPALLR
Sbjct: 140 EIDAVGRKRGS-GVGGGNDEREQTLNQLLVEMDGFEKDTA-IVVMAATNRPDILDPALLR 197
Query: 466 KGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNIL 525
GRFD+ + + P GR IL++HAR K +DV L +A+ T F GA+L+N+L
Sbjct: 198 PGRFDRQIAIDAPDVKGREQILRIHARGKPL----AEDVDLALLAKRTPGFVGADLENLL 253
Query: 526 NEAGILTARKDLDYIGQEELLEALKRQKGTFETGQEDSTDIPEELKLRLAYREAAVAVLA 585
NEA +L AR+ I ++L EA R ++ P + ++ AY EA A LA
Sbjct: 254 NEAALLAAREGRRKITMKDLEEAADRV--MMLPAKKSLVLSPRDRRI-TAYHEAGHA-LA 309
Query: 586 CHLPDPYRPIIETDIKSIRSQPNMRYAEISGRVFSRKNDY--------LNAIVRACAPRV 637
H + + + I P R G + R+ D L+ I A A R
Sbjct: 310 AHFLEHADGVHKVTI-----VPRGRAL---GFMMPRREDMLHWSRKRLLDQIAVALAGRA 361
Query: 638 IEEQMFGIDNMCWISSKATLDASRLAEFLILQTGMTA-FGKAYYRNQSDL------VPNL 690
EE +F D++ + A+ LA +I + GM FG Y + D V
Sbjct: 362 AEEIVF--DDVTTGAENDFRQATELARRMITEWGMHPEFGPVAYAVREDTYLGGYDVRQY 419
Query: 691 ATKLEALRDEYMRFAVE----KCASVLREYHSAVETITDILLEKGEIKAEEIWDIYKKAP 746
+ + DE +R +E + ++L E +E + + LLE+ + AEE + + P
Sbjct: 420 SEETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVEGLP 479
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 239 bits (609), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 193/480 (40%), Positives = 262/480 (54%), Gaps = 41/480 (8%)
Query: 286 SLGKSRAKFISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLH 345
S KSRA+ ++ E VTF D AG E K EL+EIV LKN F G PKGVLL
Sbjct: 13 SFTKSRARVLT--EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLV 70
Query: 346 GPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFID 405
GPPG GKT LA+A+AGEA VPF A+G+DFVEMFVGV A+RV+DLF +A+ AP I+FID
Sbjct: 71 GPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFID 130
Query: 406 EIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLR 465
EIDA+G KRG +GGG EREQ L Q+L EMDGF+ T+ ++V+ ATNR DILDPALLR
Sbjct: 131 EIDAVGRKRGS-GVGGGNDEREQTLNQLLVEMDGFEKDTA-IVVMAATNRPDILDPALLR 188
Query: 466 KGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNIL 525
GRFD+ + + P GR IL++HAR K +DV L +A+ T F GA+L+N+L
Sbjct: 189 PGRFDRQIAIDAPDVKGREQILRIHARGKPL----AEDVDLALLAKRTPGFVGADLENLL 244
Query: 526 NEAGILTARKDLDYIGQEELLEALKRQKGTFETGQEDSTDIPEELKLRLAYREAAVAVLA 585
NEA +L AR+ I ++L EA R ++ P + ++ AY EA A LA
Sbjct: 245 NEAALLAAREGRRKITMKDLEEAADRV--MMLPAKKSLVLSPRDRRI-TAYHEAGHA-LA 300
Query: 586 CHLPDPYRPIIETDIKSIRSQPNMRYAEISGRVFSRKNDY--------LNAIVRACAPRV 637
H + + + I P R G + R+ D L+ I A A R
Sbjct: 301 AHFLEHADGVHKVTI-----VPRGRAL---GFMMPRREDMLHWSRKRLLDQIAVALAGRA 352
Query: 638 IEEQMFGIDNMCWISSKATLDASRLAEFLILQTGM-TAFGKAYYRNQSDL------VPNL 690
EE +F D++ + A+ LA +I + GM FG Y + D V
Sbjct: 353 AEEIVF--DDVTTGAENDFRQATELARRMITEWGMHPEFGPVAYAVREDTYLGGYDVRQY 410
Query: 691 ATKLEALRDEYMRFAVE----KCASVLREYHSAVETITDILLEKGEIKAEEIWDIYKKAP 746
+ + DE +R +E + ++L E +E + + LLE+ + AEE + + P
Sbjct: 411 SEETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVEGLP 470
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 238 bits (608), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 133/239 (55%), Positives = 160/239 (66%), Gaps = 6/239 (2%)
Query: 298 EETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAK 357
E+ TF D AG + K E+ E+V L+ FQ G PKGVL+ GPPGTGKTLLAK
Sbjct: 4 EDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAK 63
Query: 358 AIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGP 417
AIAGEA VPFF +G+DFVEMFVGV ASRV+D+F A+ AP IIFIDEIDA+G +RG
Sbjct: 64 AIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGA- 122
Query: 418 DIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGL 477
+GGG EREQ L Q+L EMDGF+ ++VI ATNR D+LDPALLR GRFD+ V VGL
Sbjct: 123 GLGGGHDEREQTLNQMLVEMDGFE-GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGL 181
Query: 478 PSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKD 536
P GR ILKVH R R D+ IA T F+GA+L N++NEA + AR +
Sbjct: 182 PDVRGREQILKVHMR----RVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN 236
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 224 bits (570), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 143/263 (54%), Positives = 179/263 (68%), Gaps = 8/263 (3%)
Query: 286 SLGKSRAKFISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLH 345
S KSRA+ ++ E VTF D AG E K EL+EIV LKN F G PKGVLL
Sbjct: 22 SFTKSRARVLT--EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLV 79
Query: 346 GPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFID 405
GPPG GKT LA+A+AGEA VPF A+G+DFVEMFVGV A+RV+DLF +A+ AP I+FID
Sbjct: 80 GPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFID 139
Query: 406 EIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLR 465
EIDA+G KRG +GGG EREQ L Q+L EMDGF+ T+ ++V+ ATNR DILDPALLR
Sbjct: 140 EIDAVGRKRGS-GVGGGNDEREQTLNQLLVEMDGFEKDTA-IVVMAATNRPDILDPALLR 197
Query: 466 KGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNIL 525
GRFD+ + + P GR IL++HAR K +DV L +A+ T F GA+L+N+L
Sbjct: 198 PGRFDRQIAIDAPDVKGREQILRIHARGKPL----AEDVDLALLAKRTPGFVGADLENLL 253
Query: 526 NEAGILTARKDLDYIGQEELLEA 548
NEA +L AR+ I ++L EA
Sbjct: 254 NEAALLAAREGRRKITMKDLEEA 276
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 221 bits (563), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/262 (47%), Positives = 171/262 (65%), Gaps = 7/262 (2%)
Query: 291 RAKFISAEETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPG 349
RAK + +E V ++D G E +E++E+V + LK+ E F+ GI PKG+LL+GPPG
Sbjct: 2 RAKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPG 61
Query: 350 TGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDA 409
TGKTLLAKA+A E F G++ V+ F+G AS VKD+F A+ APSIIFIDEIDA
Sbjct: 62 TGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDA 121
Query: 410 IGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRF 469
I +KR + GG E ++ L+Q+L EMDGF + V +IGATNR DILDPA+LR GRF
Sbjct: 122 IAAKRTDA-LTGGDREVQRTLMQLLAEMDGFD-ARGDVKIIGATNRPDILDPAILRPGRF 179
Query: 470 DKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAG 529
D+I+ V P + GR ILK+H R +DV L+EIA++TE GAEL+ I EAG
Sbjct: 180 DRIIEVPAPDEKGRLEILKIHTRKMNL----AEDVNLEEIAKMTEGCVGAELKAICTEAG 235
Query: 530 ILTARKDLDYIGQEELLEALKR 551
+ R+ DY+ ++ +A+++
Sbjct: 236 MNAIRELRDYVTMDDFRKAVEK 257
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 219 bits (557), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 125/222 (56%), Positives = 152/222 (68%), Gaps = 6/222 (2%)
Query: 299 ETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKA 358
E VTF D AG E K EL+EIV LKN F G PKGVLL GPPG GKT LA+A
Sbjct: 9 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARA 68
Query: 359 IAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPD 418
+AGEA VPF A+G+DFVEMFVGV A+RV+DLF +A+ AP I+FIDEIDA+G KRG
Sbjct: 69 VAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGS-G 127
Query: 419 IGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLP 478
+GGG EREQ L Q+L EMDGF+ T+ ++V+ ATNR DILDPALLR GRFD+ + + P
Sbjct: 128 VGGGNDEREQTLNQLLVEMDGFEKDTA-IVVMAATNRPDILDPALLRPGRFDRQIAIDAP 186
Query: 479 SKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAE 520
GR IL++HAR K +DV L +A+ T F GA+
Sbjct: 187 DVKGREQILRIHARGKPL----AEDVDLALLAKRTPGFVGAD 224
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 201 bits (511), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 112/234 (47%), Positives = 144/234 (61%), Gaps = 3/234 (1%)
Query: 302 GVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAG 361
GV+F D AG K E++E V LK+ E F G PKG LL GPPG GKTLLAKA+A
Sbjct: 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61
Query: 362 EAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGG 421
EA VPF A G +FVE+ G+ A+RV+ LF AR+ AP I++IDEIDA+G KR G
Sbjct: 62 EAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGF 121
Query: 422 GGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKD 481
E EQ L Q+L EMDG +T V+V+ +TNR DILD AL+R GR D+ V + LP+
Sbjct: 122 SNTEEEQTLNQLLVEMDGMG-TTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQ 180
Query: 482 GRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARK 535
R I + H K + + Q +AELT F+GA++ NI NEA + AR+
Sbjct: 181 ERREIFEQHL--KSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAARE 232
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 194 bits (493), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 160/261 (61%), Gaps = 7/261 (2%)
Query: 290 SRAKFISAEETTGVTFDDFAGQEYIKRELQE-IVRILKNDEEFQNKGIYCPKGVLLHGPP 348
SR K + +E T+ D G + EL E IV +K ++F++ GI PKG L++GPP
Sbjct: 165 SRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPP 224
Query: 349 GTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEID 408
GTGKTLLA+A A + F V+M++G A V+D FA A+ AP+IIFIDE+D
Sbjct: 225 GTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELD 284
Query: 409 AIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGR 468
AIG+KR + G E ++ +L++L ++DGF S +V V+ ATNR+D+LDPALLR GR
Sbjct: 285 AIGTKRFDSE-KSGDREVQRTMLELLNQLDGFS-SDDRVKVLAATNRVDVLDPALLRSGR 342
Query: 469 FDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEA 528
D+ + LPS+D R IL++H+R + + D+ QE+A T++F GA+L+ + EA
Sbjct: 343 LDRKIEFPLPSEDSRAQILQIHSR----KMTTDDDINWQELARSTDEFNGAQLKAVTVEA 398
Query: 529 GILTARKDLDYIGQEELLEAL 549
G++ R + E+ +E +
Sbjct: 399 GMIALRNGQSSVKHEDFVEGI 419
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 189 bits (481), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 158/252 (62%), Gaps = 11/252 (4%)
Query: 303 VTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAG 361
+TFD G REL+E++ + LKN E FQ GI PKGVLL+GPPGTGKTLLAKA+A
Sbjct: 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA 237
Query: 362 EAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGG 421
G F + + V+ ++G +A ++++FA A+ P IIF+DE+DAIG +R G
Sbjct: 238 TIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSE---G 294
Query: 422 GGAERE--QGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPS 479
A+RE + L+++LT+MDGF + Q +I ATNR D LDPALLR GR D+ V + LP+
Sbjct: 295 TSADREIQRTLMELLTQMDGFD-NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPN 353
Query: 480 KDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDLDY 539
+ GR I K+H + ++ + + ++++ F GA+++N EAG R D D+
Sbjct: 354 EAGRLEIFKIHT----AKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDH 409
Query: 540 IGQEELLEALKR 551
I ++L++A+++
Sbjct: 410 INPDDLMKAVRK 421
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 181 bits (459), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/253 (38%), Positives = 157/253 (62%), Gaps = 7/253 (2%)
Query: 294 FISAEETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGK 352
+ E+ T+D G +E++E++ + +K+ E F++ GI PKGV+L+GPPGTGK
Sbjct: 136 LMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGK 195
Query: 353 TLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGS 412
TLLA+A+A F +G + V+ ++G + V++LF AR APSIIF+DEID+IGS
Sbjct: 196 TLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS 255
Query: 413 KRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKI 472
R GGG +E ++ +L++L ++DGF+ S + + +I ATNRLDILDPALLR GR D+
Sbjct: 256 TRVEGS-GGGDSEVQRTMLELLNQLDGFETSKN-IKIIMATNRLDILDPALLRPGRIDRK 313
Query: 473 VRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILT 532
+ PS R IL++H+R + + L+++AE +GA+++ + EAG+
Sbjct: 314 IEFPPPSVAARAEILRIHSRKMNL----TRGINLRKVAEKMNGCSGADVKGVCTEAGMYA 369
Query: 533 ARKDLDYIGQEEL 545
R+ ++ QE+
Sbjct: 370 LRERRIHVTQEDF 382
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/234 (44%), Positives = 148/234 (63%), Gaps = 7/234 (2%)
Query: 299 ETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAK 357
E VT++D G E +KRELQE+V+ +++ ++F G+ KGVL +GPPG GKTLLAK
Sbjct: 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67
Query: 358 AIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGP 417
AIA E F + G + + M+ G + + V+++F AR AP ++F DE+D+I RGG
Sbjct: 68 AIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN 127
Query: 418 DIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGL 477
GGGA ++ + QILTEMDG + V +IGATNR DI+DPA+LR GR D+++ + L
Sbjct: 128 IGDGGGAA-DRVINQILTEMDGMS-TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 185
Query: 478 PSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGIL 531
P + R AILK + R +S KDV L+ +A++T F+GA+L I A L
Sbjct: 186 PDEKSRVAILKANLR----KSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKL 235
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 169 bits (427), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 147/231 (63%), Gaps = 7/231 (3%)
Query: 299 ETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAK 357
E VT++D G E +KRELQE+V+ +++ ++F G+ KGVL +GPPG GKTLLAK
Sbjct: 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 529
Query: 358 AIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGP 417
AIA E F + G + + M+ G + + V+++F AR AP ++F DE+D+I RGG
Sbjct: 530 AIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN 589
Query: 418 DIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGL 477
GGGA ++ + QILTEMDG + V +IGATNR DI+DPA+LR GR D+++ + L
Sbjct: 590 IGDGGGAA-DRVINQILTEMDGMS-TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 647
Query: 478 PSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEA 528
P + R AILK + R +S KDV L+ +A++T F+GA+L I A
Sbjct: 648 PDEKSRVAILKANLR----KSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 694
Score = 166 bits (420), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 145/248 (58%), Gaps = 10/248 (4%)
Query: 298 EETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLA 356
E V +DD G +++E+V + L++ F+ G+ P+G+LL+GPPGTGKTL+A
Sbjct: 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 357 KAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGG 416
+A+A E G FF NG + + G + S ++ F A AP+IIFIDE+DAI KR
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR-- 313
Query: 417 PDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVG 476
+ G ER + + Q+LT MDG K + V+V+ ATNR + +DPAL R GRFD+ V +G
Sbjct: 314 -EKTHGEVER-RIVSQLLTLMDGLK-QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIG 370
Query: 477 LPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKD 536
+P GR IL++H +N DV L+++A T GA+L + +EA + RK
Sbjct: 371 IPDATGRLEILQIHTKNMKLAD----DVDLEQVANETHGHVGADLAALCSEAALQAIRKK 426
Query: 537 LDYIGQEE 544
+D I E+
Sbjct: 427 MDLIDLED 434
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 169 bits (427), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 147/231 (63%), Gaps = 7/231 (3%)
Query: 299 ETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAK 357
E VT++D G E +KRELQE+V+ +++ ++F G+ KGVL +GPPG GKTLLAK
Sbjct: 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 529
Query: 358 AIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGP 417
AIA E F + G + + M+ G + + V+++F AR AP ++F DE+D+I RGG
Sbjct: 530 AIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN 589
Query: 418 DIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGL 477
GGGA ++ + QILTEMDG + V +IGATNR DI+DPA+LR GR D+++ + L
Sbjct: 590 IGDGGGAA-DRVINQILTEMDGMS-TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 647
Query: 478 PSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEA 528
P + R AILK + R +S KDV L+ +A++T F+GA+L I A
Sbjct: 648 PDEKSRVAILKANLR----KSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 694
Score = 166 bits (419), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 145/248 (58%), Gaps = 10/248 (4%)
Query: 298 EETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLA 356
E V +DD G +++E+V + L++ F+ G+ P+G+LL+GPPGTGKTL+A
Sbjct: 196 ESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 357 KAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGG 416
+A+A E G FF NG + + G + S ++ F A AP+IIFIDE+DAI KR
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR-- 313
Query: 417 PDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVG 476
+ G ER + + Q+LT MDG K + V+V+ ATNR + +DPAL R GRFD+ V +G
Sbjct: 314 -EKTHGEVER-RIVSQLLTLMDGLK-QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIG 370
Query: 477 LPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKD 536
+P GR IL++H +N DV L+++A T GA+L + +EA + RK
Sbjct: 371 IPDATGRLEILQIHTKNMKLAD----DVDLEQVANETHGHVGADLAALCSEAALQAIRKK 426
Query: 537 LDYIGQEE 544
+D I E+
Sbjct: 427 MDLIDLED 434
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 148/243 (60%), Gaps = 19/243 (7%)
Query: 303 VTFDDFAGQEYIKREL-QEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAG 361
VT+ D E I+ EL I+ ++N ++F+ G+ P GVLL GPPG GKTLLAKA+A
Sbjct: 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVAN 66
Query: 362 EAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGG 421
E+G+ F + G + + M+VG + V+ +F A++ AP +IF DE+DA+ +R
Sbjct: 67 ESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRR------- 119
Query: 422 GGAEREQG-----LLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVG 476
++RE G + Q+LTEMDG + + QV ++ ATNR DI+DPA+LR GR DK + VG
Sbjct: 120 --SDRETGASVRVVNQLLTEMDGLE-ARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVG 176
Query: 477 LPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIA-ELTED-FTGAELQNILNEAGILTAR 534
LP R AILK +N + + DV L+ IA +L D +TGA+L ++ EA I R
Sbjct: 177 LPPPADRLAILKTITKNGT-KPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALR 235
Query: 535 KDL 537
+++
Sbjct: 236 QEM 238
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/259 (37%), Positives = 151/259 (58%), Gaps = 7/259 (2%)
Query: 294 FISAEETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGK 352
++ EE VT+ D G + +L+E+V + L + E F GI PKG+LL+GPPGTGK
Sbjct: 197 MMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGK 256
Query: 353 TLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGS 412
TL A+A+A F G++ V+ +VG A V++LF AR+ IIF DEIDA+G
Sbjct: 257 TLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGG 316
Query: 413 KRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKI 472
R D GG E ++ +L+++T++DGF + V+ ATNR + LDPALLR GR D+
Sbjct: 317 ARFD-DGAGGDNEVQRTMLELITQLDGFD-PRGNIKVMFATNRPNTLDPALLRPGRIDRK 374
Query: 473 VRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILT 532
V LP +GR I ++H+++ E+ + + I+ L + TGAEL+++ EAG+
Sbjct: 375 VEFSLPDLEGRANIFRIHSKSMSV----ERGIRWELISRLCPNSTGAELRSVCTEAGMFA 430
Query: 533 ARKDLDYIGQEELLEALKR 551
R +++ L+A+ +
Sbjct: 431 IRARRKVATEKDFLKAVDK 449
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 166 bits (420), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 145/248 (58%), Gaps = 10/248 (4%)
Query: 298 EETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLA 356
E V +DD G +++E+V + L++ F+ G+ P+G+LL+GPPGTGKTL+A
Sbjct: 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 357 KAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGG 416
+A+A E G FF NG + + G + S ++ F A AP+IIFIDE+DAI KR
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR-- 313
Query: 417 PDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVG 476
+ G ER + + Q+LT MDG K + V+V+ ATNR + +DPAL R GRFD+ V +G
Sbjct: 314 -EKTHGEVER-RIVSQLLTLMDGLK-QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIG 370
Query: 477 LPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKD 536
+P GR IL++H +N DV L+++A T GA+L + +EA + RK
Sbjct: 371 IPDATGRLEILQIHTKNMKLAD----DVDLEQVANETHGHVGADLAALCSEAALQAIRKK 426
Query: 537 LDYIGQEE 544
+D I E+
Sbjct: 427 MDLIDLED 434
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 166 bits (420), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 145/248 (58%), Gaps = 10/248 (4%)
Query: 298 EETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLA 356
E V +DD G +++E+V + L++ F+ G+ P+G+LL+GPPGTGKTL+A
Sbjct: 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 357 KAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGG 416
+A+A E G FF NG + + G + S ++ F A AP+IIFIDE+DAI KR
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR-- 313
Query: 417 PDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVG 476
+ G ER + + Q+LT MDG K + V+V+ ATNR + +DPAL R GRFD+ V +G
Sbjct: 314 -EKTHGEVER-RIVSQLLTLMDGLK-QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIG 370
Query: 477 LPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKD 536
+P GR IL++H +N DV L+++A T GA+L + +EA + RK
Sbjct: 371 IPDATGRLEILQIHTKNMKLAD----DVDLEQVANETHGHVGADLAALCSEAALQAIRKK 426
Query: 537 LDYIGQEE 544
+D I E+
Sbjct: 427 MDLIDLED 434
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 166 bits (420), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 145/248 (58%), Gaps = 10/248 (4%)
Query: 298 EETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLA 356
E V +DD G +++E+V + L++ F+ G+ P+G+LL+GPPGTGKTL+A
Sbjct: 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 357 KAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGG 416
+A+A E G FF NG + + G + S ++ F A AP+IIFIDE+DAI KR
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR-- 313
Query: 417 PDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVG 476
+ G ER + + Q+LT MDG K + V+V+ ATNR + +DPAL R GRFD+ V +G
Sbjct: 314 -EKTHGEVER-RIVSQLLTLMDGLK-QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIG 370
Query: 477 LPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKD 536
+P GR IL++H +N DV L+++A T GA+L + +EA + RK
Sbjct: 371 IPDATGRLEILQIHTKNMKLAD----DVDLEQVANETHGHVGADLAALCSEAALQAIRKK 426
Query: 537 LDYIGQEE 544
+D I E+
Sbjct: 427 MDLIDLED 434
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 166 bits (419), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 145/248 (58%), Gaps = 10/248 (4%)
Query: 298 EETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLA 356
E V +DD G +++E+V + L++ F+ G+ P+G+LL+GPPGTGKTL+A
Sbjct: 196 ESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 357 KAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGG 416
+A+A E G FF NG + + G + S ++ F A AP+IIFIDE+DAI KR
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR-- 313
Query: 417 PDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVG 476
+ G ER + + Q+LT MDG K + V+V+ ATNR + +DPAL R GRFD+ V +G
Sbjct: 314 -EKTHGEVER-RIVSQLLTLMDGLK-QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIG 370
Query: 477 LPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKD 536
+P GR IL++H +N DV L+++A T GA+L + +EA + RK
Sbjct: 371 IPDATGRLEILQIHTKNMKLAD----DVDLEQVANETHGHVGADLAALCSEAALQAIRKK 426
Query: 537 LDYIGQEE 544
+D I E+
Sbjct: 427 MDLIDLED 434
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 162 bits (410), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 107/273 (39%), Positives = 150/273 (54%), Gaps = 12/273 (4%)
Query: 290 SRAKFISAEETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPP 348
S + E VT+ D G + K+E++E V + L + ++ GI P+GVLL+GPP
Sbjct: 156 SSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPP 215
Query: 349 GTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEID 408
GTGKT+L KA+A F NG++FV ++G V+D+F AR APSIIFIDE+D
Sbjct: 216 GTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVD 275
Query: 409 AIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGR 468
+I +KR G E ++ L+++LT+MDGF ST+ V VI ATNR D LDPALLR GR
Sbjct: 276 SIATKRFDAQT-GSDREVQRILIELLTQMDGFDQSTN-VKVIMATNRADTLDPALLRPGR 333
Query: 469 FDKIVRVGLPS---KDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNIL 525
D+ ++ PS + R I A E + D L+ + +GA + I+
Sbjct: 334 LDR--KIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIR----NDSLSGAVIAAIM 387
Query: 526 NEAGILTARKDLDYIGQEELLEALKRQKGTFET 558
EAG+ RK+ I Q +L EA Q T T
Sbjct: 388 QEAGLRAVRKNRYVILQSDLEEAYATQVKTDNT 420
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 153 bits (386), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 146/249 (58%), Gaps = 7/249 (2%)
Query: 304 TFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGE 362
++ D G E +E++E V + L + E ++ GI PKGV+L+G PGTGKTLLAKA+A +
Sbjct: 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ 239
Query: 363 AGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGG 422
F G++ ++ ++G + +F A APSI+FIDEIDAIG+KR + GG
Sbjct: 240 TSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSN-SGG 298
Query: 423 GAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDG 482
E ++ +L++L ++DGF V VI ATN+++ LDPAL+R GR D+ + P
Sbjct: 299 EREIQRTMLELLNQLDGFD-DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLST 357
Query: 483 RFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDLDYIGQ 542
+ IL +H +K SE DV L+ + +D +GA++Q + EAG+L R+ +
Sbjct: 358 KKKILGIHT-SKMNLSE---DVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTA 413
Query: 543 EELLEALKR 551
E+ +A +R
Sbjct: 414 EDFKQAKER 422
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 95/267 (35%), Positives = 142/267 (53%), Gaps = 17/267 (6%)
Query: 270 TPPQKTRQPLQRRALGSLGKSRAKFISAE---ETTGVTFDDFAGQEYIKRELQEIVRILK 326
TP TR+ + ++ + A I E T V FDD AGQ+ K+ LQEIV IL
Sbjct: 76 TPTTATRKKKDLKNFRNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIV-ILP 134
Query: 327 NDEEFQNKGIYCP-KGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAAS 385
+ G+ P +G+LL GPPG GKT+LAKA+A E+ FF + +VG
Sbjct: 135 SLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEK 194
Query: 386 RVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFK-VST 444
V+ LFA AR PSIIFID++D++ +R G A R + L E DG +
Sbjct: 195 LVRALFAVARELQPSIIFIDQVDSLLCER---REGEHDASRRLK-TEFLIEFDGVQSAGD 250
Query: 445 SQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGR-FAILKVHARNKYFRSEEEKD 503
+VLV+GATNR LD A+LR RF K V V LP+++ R + + + +++E
Sbjct: 251 DRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKE-- 306
Query: 504 VLLQEIAELTEDFTGAELQNILNEAGI 530
L ++A +T+ ++G++L + +A +
Sbjct: 307 --LAQLARMTDGYSGSDLTALAKDAAL 331
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 131/232 (56%), Gaps = 16/232 (6%)
Query: 303 VTFDDFAGQEYIKRELQEIV--RILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIA 360
V ++D AG E+ K ++EIV +L+ D +G PKG+LL GPPGTGKTL+ K IA
Sbjct: 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGP--PKGILLFGPPGTGKTLIGKCIA 138
Query: 361 GEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIG 420
++G FF+ + + +VG V+ LFA AR P++IFIDEID++ S+RG
Sbjct: 139 SQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRG----D 194
Query: 421 GGGAEREQGLLQILTEMDGFKVST-SQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPS 479
G + + L ++DG S+ ++LV+GATNR +D A R R K + + LP
Sbjct: 195 GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPE 252
Query: 480 KDGRFAI-LKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGI 530
R I + + ++ + SEEE +++I + ++ F+GA++ + EA +
Sbjct: 253 ASARKQIVINLMSKEQCCLSEEE----IEQIVQQSDAFSGADMTQLCREASL 300
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 128/239 (53%), Gaps = 12/239 (5%)
Query: 299 ETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCP-KGVLLHGPPGTGKTLLAK 357
E V + D AG E K L+E V IL G P +G+LL GPPGTGK+ LAK
Sbjct: 127 ERPNVKWSDVAGLEGAKEALKEAV-ILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 185
Query: 358 AIAGEAG-VPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGG 416
A+A EA FF+ + +D V ++G + VK+LF AR PSIIFIDEID++ R
Sbjct: 186 AVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE 245
Query: 417 PDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVG 476
+ A R + + L +M G V +LV+GATN +LD A+ R RF+K + +
Sbjct: 246 NE--SEAARRIK--TEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIP 299
Query: 477 LPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARK 535
LP R A+ ++H + S E D QE+ T+ ++GA++ I+ +A + RK
Sbjct: 300 LPEAHARAAMFRLHLGSTQ-NSLTEAD--FQELGRKTDGYSGADISIIVRDALMQPVRK 355
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 115 bits (289), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 132/242 (54%), Gaps = 13/242 (5%)
Query: 296 SAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCP-KGVLLHGPPGTGKTL 354
S E V ++D AG E K L+E V IL KG P G+LL+GPPGTGK+
Sbjct: 17 SLSEKPNVKWEDVAGLEGAKEALKEAV-ILPVKFPHLFKGNRKPTSGILLYGPPGTGKSY 75
Query: 355 LAKAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKR 414
LAKA+A EA FF+ + +D V ++G + VK LFA AR PSIIFIDE+DA+ R
Sbjct: 76 LAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTR 135
Query: 415 GGPDIGGGGAEREQGL-LQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIV 473
G G +E + + ++L +M+G + VLV+GATN LD A+ R RF++ +
Sbjct: 136 -----GEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRI 188
Query: 474 RVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTA 533
+ LP R + +++ + +E + + +TE ++G+++ ++ +A +
Sbjct: 189 YIPLPDLAARTTMFEINVGDTPCVLTKED---YRTLGAMTEGYSGSDIAVVVKDALMQPI 245
Query: 534 RK 535
RK
Sbjct: 246 RK 247
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 127/239 (53%), Gaps = 12/239 (5%)
Query: 299 ETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCP-KGVLLHGPPGTGKTLLAK 357
E V + D AG E K L+E V IL G P +G+LL GPPGTGK+ LAK
Sbjct: 5 ERPNVKWSDVAGLEGAKEALKEAV-ILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 63
Query: 358 AIAGEAG-VPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGG 416
A+A EA FF+ + +D V ++G + VK+LF AR PSIIFIDEID++ R
Sbjct: 64 AVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE 123
Query: 417 PDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVG 476
+ A R + + L +M G V +LV+GATN +LD A+ R RF+K + +
Sbjct: 124 NE--SEAARRIK--TEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIP 177
Query: 477 LPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARK 535
LP R A+ K+H S E D +E+ T+ ++GA++ I+ +A + RK
Sbjct: 178 LPEPHARAAMFKLHLGTTQ-NSLTEAD--FRELGRKTDGYSGADISIIVRDALMQPVRK 233
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 131/239 (54%), Gaps = 13/239 (5%)
Query: 299 ETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCP-KGVLLHGPPGTGKTLLAK 357
E V ++D AG E K L+E V IL KG P G+LL+GPPGTGK+ LAK
Sbjct: 11 EKPNVKWEDVAGLEGAKEALKEAV-ILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69
Query: 358 AIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGP 417
A+A EA FF+ + +D V ++G + VK LFA AR PSIIFID++DA+ R
Sbjct: 70 AVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR--- 126
Query: 418 DIGGGGAEREQGL-LQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVG 476
G G +E + + ++L +M+G + VLV+GATN LD A+ R RF++ + +
Sbjct: 127 --GEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIP 182
Query: 477 LPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARK 535
LP R + +++ + +E + + +TE ++G+++ ++ +A + RK
Sbjct: 183 LPDLAARTTMFEINVGDTPCVLTKED---YRTLGAMTEGYSGSDIAVVVKDALMQPIRK 238
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 299 ETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCP-KGVLLHGPPGTGKTLLAK 357
E V ++D AG E K L+E V IL KG P G+LL+GPPGTGK+ LAK
Sbjct: 44 EKPNVKWEDVAGLEGAKEALKEAV-ILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 102
Query: 358 AIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGP 417
A+A EA FF+ + +D V ++G + VK LFA AR PSIIFID++DA+ R
Sbjct: 103 AVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR--- 159
Query: 418 DIGGGGAEREQGL-LQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVG 476
G G +E + + ++L +M+G + VLV+GATN LD A+ R RF++ + +
Sbjct: 160 --GEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIP 215
Query: 477 LPSKDGRFAILKVHARNKYFRSEEEKDVLLQE----IAELTEDFTGAELQNILNEAGILT 532
LP R + +++ + VL +E + +TE ++G+++ ++ +A +
Sbjct: 216 LPDLAARTTMFEINVGDT-------PSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQP 268
Query: 533 ARK 535
RK
Sbjct: 269 IRK 271
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 131/239 (54%), Gaps = 13/239 (5%)
Query: 299 ETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCP-KGVLLHGPPGTGKTLLAK 357
E V ++D AG E K L+E V IL KG P G+LL+GPPGTGK+ LAK
Sbjct: 29 EKPNVKWEDVAGLEGAKEALKEAV-ILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 87
Query: 358 AIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGP 417
A+A EA FF+ + +D V ++G + VK LFA AR PSIIFID++DA+ R
Sbjct: 88 AVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR--- 144
Query: 418 DIGGGGAEREQGL-LQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVG 476
G G +E + + ++L +M+G + VLV+GATN LD A+ R RF++ + +
Sbjct: 145 --GEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIP 200
Query: 477 LPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARK 535
LP R + +++ + +E + + +TE ++G+++ ++ +A + RK
Sbjct: 201 LPDLAARTTMFEINVGDTPCVLTKED---YRTLGAMTEGYSGSDIAVVVKDALMQPIRK 256
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 121/232 (52%), Gaps = 15/232 (6%)
Query: 303 VTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCP-KGVLLHGPPGTGKTLLAKAIAG 361
V + D AGQ+ K+ LQE+V IL + G+ P KG+LL GPPG GKTLLA+A+A
Sbjct: 18 VEWTDIAGQDVAKQALQEMV-ILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT 76
Query: 362 EAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGG 421
E F + +VG V+ LFA AR PSIIFIDE+D++ S+
Sbjct: 77 ECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSE-----RSS 131
Query: 422 GGAEREQGL-LQILTEMDGF--KVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLP 478
E + L + L E DG +++V+ ATNR LD A LR RF K V V LP
Sbjct: 132 SEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLP 189
Query: 479 SKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGI 530
+ R +L + + + E L+ +A++T+ ++G++L + +A +
Sbjct: 190 DEQTRELLLNRLLQKQGSPLDTEA---LRRLAKITDGYSGSDLTALAKDAAL 238
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 338 CPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM-FVGVAA-SRVKDLFASAR 395
PK +L+ GP G GKT +A+ +A A PF T F E+ +VG S ++DL SA
Sbjct: 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAG 108
Query: 396 SFAPS-----IIFIDEIDAIGSKRG---GPDIGGGGAEREQGLLQILTEMDGFKVSTSQV 447
+ I+FIDEID I K+G G D+ G +R+ +L ++G VST
Sbjct: 109 GAIDAVEQNGIVFIDEIDKI-CKKGEYSGADVSREGVQRD-----LLPLVEGSTVSTKHG 162
Query: 448 LV 449
+V
Sbjct: 163 MV 164
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 24/148 (16%)
Query: 305 FDDFA-GQEYIKRELQEIV----RILKNDEEFQNKGIYCPK-GVLLHGPPGTGKTLLAKA 358
DD+ GQE K+ L V + L+N + + G+ K +LL GP G+GKTLLA+
Sbjct: 13 LDDYVIGQEQAKKVLAVAVYNHYKRLRNGD--TSNGVELGKSNILLIGPTGSGKTLLAET 70
Query: 359 IAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFA--------SARSFAPSIIFIDEIDAI 410
+A VPF A+ T E G V+++ + I++ID+ID I
Sbjct: 71 LARLLDVPFTMADATTLTE--AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKI 128
Query: 411 GSKRGGP----DIGGGGAEREQGLLQIL 434
K P D+ G G +Q LL+++
Sbjct: 129 SRKSDNPSITRDVSGEGV--QQALLKLI 154
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 24/148 (16%)
Query: 305 FDDFA-GQEYIKRELQEIV----RILKNDEEFQNKGIYCPK-GVLLHGPPGTGKTLLAKA 358
DD+ GQE K+ L V + L+N + + G+ K +LL GP G+GKTLLA+
Sbjct: 13 LDDYVIGQEQAKKVLAVAVYNHYKRLRNGD--TSNGVELGKSNILLIGPTGSGKTLLAET 70
Query: 359 IAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFA--------SARSFAPSIIFIDEIDAI 410
+A VPF A+ T E G V+++ + I++ID+ID I
Sbjct: 71 LARLLDVPFTMADATTLTE--AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKI 128
Query: 411 GSKRGGP----DIGGGGAEREQGLLQIL 434
K P D+ G G +Q LL+++
Sbjct: 129 SRKSDNPSITRDVSGEGV--QQALLKLI 154
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 16/106 (15%)
Query: 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFA-------- 392
+LL GP G+GKTL+A+ +A +P ++ T E G V+++
Sbjct: 74 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTE--AGYVGEDVENILTRLLQASDW 131
Query: 393 SARSFAPSIIFIDEIDAIG----SKRGGPDIGGGGAEREQGLLQIL 434
+ + I+FIDEID I ++ D+ G G +Q LL+I+
Sbjct: 132 NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGV--QQALLKIV 175
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 27/154 (17%)
Query: 342 VLLHGP-PGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSF--A 398
++LH P PGTGKT +AKA+ + NG+D FV + FASA SF
Sbjct: 50 IILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTN----FASAASFDGR 105
Query: 399 PSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDI 458
+I IDE D G AE ++ L M+ + + S ++I A N I
Sbjct: 106 QKVIVIDEFDR-----------SGLAESQRHLRSF---MEAYSSNCS--IIITANNIDGI 149
Query: 459 LDPALLRKGRFDKIVRVGLPSKDGRFAILKVHAR 492
+ P R +++ G P+ + + ++K R
Sbjct: 150 IKPLQSRC----RVITFGQPTDEDKIEMMKQMIR 179
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 8/91 (8%)
Query: 310 GQEYIKRE----LQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGV 365
GQ+ KR L+ R ++ +EE +++ PK +L+ GP G GKT +A+ +A A
Sbjct: 18 GQDNAKRSVAIALRNRWRRMQLNEELRHE--VTPKNILMIGPTGVGKTEIARRLAKLANA 75
Query: 366 PFFAANGTDFVEM-FVGVAA-SRVKDLFASA 394
PF T F E+ +VG S ++DL +A
Sbjct: 76 PFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 106
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 9/52 (17%)
Query: 401 IIFIDEIDAIGSKRG---GPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLV 449
I+FIDEID I KRG GPD+ G +R+ +L ++G VST +V
Sbjct: 251 IVFIDEIDKI-CKRGESSGPDVSREGVQRD-----LLPLVEGCTVSTKHGMV 296
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 8/91 (8%)
Query: 310 GQEYIKRE----LQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGV 365
GQ+ KR L+ R ++ +EE +++ PK +L+ GP G GKT +A+ +A A
Sbjct: 25 GQDNAKRSVAIALRNRWRRMQLNEELRHE--VTPKNILMIGPTGVGKTEIARRLAKLANA 82
Query: 366 PFFAANGTDFVEM-FVGVAA-SRVKDLFASA 394
PF T F E+ +VG S ++DL +A
Sbjct: 83 PFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 113
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 9/52 (17%)
Query: 401 IIFIDEIDAIGSKRG---GPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLV 449
I+FIDEID I KRG GPD+ G +R+ +L ++G VST +V
Sbjct: 258 IVFIDEIDKI-CKRGESSGPDVSREGVQRD-----LLPLVEGCTVSTKHGMV 303
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 8/91 (8%)
Query: 310 GQEYIKRE----LQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGV 365
GQ+ KR L+ R ++ +EE +++ PK +L+ GP G GKT +A+ +A A
Sbjct: 19 GQDNAKRSVAIALRNRWRRMQLNEELRHE--VTPKNILMIGPTGVGKTEIARRLAKLANA 76
Query: 366 PFFAANGTDFVEM-FVGVAA-SRVKDLFASA 394
PF T F E+ +VG S ++DL +A
Sbjct: 77 PFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 107
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 9/52 (17%)
Query: 401 IIFIDEIDAIGSKRG---GPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLV 449
I+FIDEID I KRG GPD+ G +R+ +L ++G VST +V
Sbjct: 252 IVFIDEIDKI-CKRGESSGPDVSREGVQRD-----LLPLVEGCTVSTKHGMV 297
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 50/106 (47%), Gaps = 18/106 (16%)
Query: 304 TFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA 363
T D++ GQE +K++L+ + K +E +LL GPPG GKT LA IA E
Sbjct: 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEH-------LLLFGPPGLGKTTLAHVIAHEL 62
Query: 364 GVPFFAANGTDFVEMFVGVAASRVKDLFAS-ARSFAPS-IIFIDEI 407
GV +G A + DL A A S I+FIDEI
Sbjct: 63 GVNLRVTSGP---------AIEKPGDLAAILANSLEEGDILFIDEI 99
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 50/106 (47%), Gaps = 18/106 (16%)
Query: 304 TFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA 363
T D++ GQE +K++L+ + K +E +LL GPPG GKT LA IA E
Sbjct: 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEH-------LLLFGPPGLGKTTLAHVIAHEL 62
Query: 364 GVPFFAANGTDFVEMFVGVAASRVKDLFAS-ARSFAPS-IIFIDEI 407
GV +G A + DL A A S I+FIDEI
Sbjct: 63 GVNLRVTSGP---------AIEKPGDLAAILANSLEEGDILFIDEI 99
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 50/106 (47%), Gaps = 18/106 (16%)
Query: 304 TFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA 363
T D++ GQE +K++L+ + K +E +LL GPPG GKT LA IA E
Sbjct: 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEH-------LLLFGPPGLGKTTLAHVIAHEL 62
Query: 364 GVPFFAANGTDFVEMFVGVAASRVKDLFAS-ARSFAPS-IIFIDEI 407
GV +G A + DL A A S I+FIDEI
Sbjct: 63 GVNLRVTSGP---------AIEKPGDLAAILANSLEEGDILFIDEI 99
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 338 CPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM-FVGVAA-SRVKDLFASA 394
PK +L+ GP G GKT +A+ +A A PF T F E+ +VG S ++DL SA
Sbjct: 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 26/126 (20%)
Query: 292 AKFISAEET---TGVTF------DDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGV 342
++F++ E T +GV F D+F GQE +K++L + K E + V
Sbjct: 2 SEFLTPERTVYDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDH-------V 54
Query: 343 LLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFA-PSI 401
LL GPPG GKT LA IA E +G V+ D+ A S +
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ---------GDMAAILTSLERGDV 105
Query: 402 IFIDEI 407
+FIDEI
Sbjct: 106 LFIDEI 111
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 26/126 (20%)
Query: 292 AKFISAEET---TGVTF------DDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGV 342
++F++ E T +GV F D+F GQE +K++L + K E + V
Sbjct: 2 SEFLTPERTVYDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDH-------V 54
Query: 343 LLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFA-PSI 401
LL GPPG GKT LA IA E +G V+ D+ A S +
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ---------GDMAAILTSLERGDV 105
Query: 402 IFIDEI 407
+FIDEI
Sbjct: 106 LFIDEI 111
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 26/126 (20%)
Query: 292 AKFISAEET---TGVTF------DDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGV 342
++F++ E T +GV F D+F GQE +K++L + K E + V
Sbjct: 2 SEFLTPERTVYDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDH-------V 54
Query: 343 LLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFA-PSI 401
LL GPPG GKT LA IA E +G V+ D+ A S +
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ---------GDMAAILTSLERGDV 105
Query: 402 IFIDEI 407
+FIDEI
Sbjct: 106 LFIDEI 111
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 308 FAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAG--V 365
GQE + IV ++K+ + + VLL GPPGTGKT LA AIA E G V
Sbjct: 39 LVGQENAREACGVIVELIKSKK-------MAGRAVLLAGPPGTGKTALALAIAQELGSKV 91
Query: 366 PFFAANGTDF 375
PF G++
Sbjct: 92 PFCPMVGSEV 101
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 26/126 (20%)
Query: 292 AKFISAEET---TGVTF------DDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGV 342
++F++ E T +GV F D+F GQE +K++L + K E + V
Sbjct: 2 SEFLTPERTVYDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDH-------V 54
Query: 343 LLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFA-PSI 401
LL GPPG GKT LA IA E +G V+ D+ A S +
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ---------GDMAAILTSLERGDV 105
Query: 402 IFIDEI 407
+FIDEI
Sbjct: 106 LFIDEI 111
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 26/126 (20%)
Query: 292 AKFISAEET---TGVTF------DDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGV 342
++F++ E T +GV F D+F GQE +K++L + K E + V
Sbjct: 2 SEFLTPERTVYDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDH-------V 54
Query: 343 LLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFA-PSI 401
LL GPPG GKT LA IA E +G V+ D+ A S +
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ---------GDMAAILTSLERGDV 105
Query: 402 IFIDEI 407
+FIDEI
Sbjct: 106 LFIDEI 111
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 308 FAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAG--V 365
GQE + IV ++K+ + + VLL GPPGTGKT LA AIA E G V
Sbjct: 53 LVGQENAREACGVIVELIKSKK-------XAGRAVLLAGPPGTGKTALALAIAQELGSKV 105
Query: 366 PFFAANGTDF 375
PF G++
Sbjct: 106 PFCPXVGSEV 115
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 26/126 (20%)
Query: 292 AKFISAEET---TGVTF------DDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGV 342
++F++ E T +GV F D+F GQE +K++L + K E + V
Sbjct: 2 SEFLTPERTVYDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDH-------V 54
Query: 343 LLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFA-PSI 401
LL GPPG G+T LA IA E +G V+ D+ A S +
Sbjct: 55 LLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQ---------GDMAAILTSLERGDV 105
Query: 402 IFIDEI 407
+FIDEI
Sbjct: 106 LFIDEI 111
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 338 CPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM-FVGVAA-SRVKDLFASA 394
PK +L GP G GKT +A+ +A A PF T F E+ +VG S ++DL SA
Sbjct: 49 TPKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 478 PSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDL 537
P+++ R ILK+H+R + + L++IAEL +GAE++ + EAG R+
Sbjct: 3 PNEEARLDILKIHSRKXNL----TRGINLRKIAELXPGASGAEVKGVCTEAGXYALRERR 58
Query: 538 DYIGQEELLEALKR 551
++ QE+ A+ +
Sbjct: 59 VHVTQEDFEXAVAK 72
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 478 PSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDL 537
P+++ R ILK+H+R + + + L++IAEL +GAE++ + EAG+ R+
Sbjct: 11 PNEEARLDILKIHSR----KMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR 66
Query: 538 DYIGQEELLEALKR 551
++ QE+ A+ +
Sbjct: 67 VHVTQEDFEMAVAK 80
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 342 VLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASR-VKDLFASARSFAPS 400
VLL GPP +GKT LA IA E+ PF D + F A + +K +F A S
Sbjct: 67 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLS 126
Query: 401 IIFIDEID 408
+ +D+I+
Sbjct: 127 CVVVDDIE 134
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 51/114 (44%), Gaps = 23/114 (20%)
Query: 305 FDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA- 363
DD GQE+I + L+ V K P +L GPPG GKT A A+A E
Sbjct: 24 LDDIVGQEHIVKRLKHYV-----------KTGSMPH-LLFAGPPGVGKTTAALALARELF 71
Query: 364 ----GVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPS---IIFIDEIDAI 410
F N +D E + V +VK+ FA + + IIF+DE DA+
Sbjct: 72 GENWRHNFLELNASD--ERGINVIREKVKE-FARTKPIGGASFKIIFLDEADAL 122
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 342 VLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASR-VKDLFASARSFAPS 400
VLL GPP +GKT LA IA E+ PF D + F A + +K +F A S
Sbjct: 66 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLS 125
Query: 401 IIFIDEID 408
+ +D+I+
Sbjct: 126 CVVVDDIE 133
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 85/221 (38%), Gaps = 46/221 (20%)
Query: 304 TFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA 363
FD + GQE IK+ L + K E C +L GP G GKT LA I+ E
Sbjct: 27 NFDGYIGQESIKKNLNVFIAAAKKRNE-------CLDHILFSGPAGLGKTTLANIISYEX 79
Query: 364 GVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAP-SIIFIDEID------------AI 410
+AN ++ + DL A + + I+FIDEI A
Sbjct: 80 -----SAN----IKTTAAPXIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAX 130
Query: 411 GSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFD 470
R IG G A + K+ + +IGAT R L L + RF
Sbjct: 131 EDYRLDIIIGSGPAAQ------------TIKIDLPKFTLIGATTRAGXLSNPL--RDRFG 176
Query: 471 KIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAE 511
R+ KD A++ A K ++ EEK L EIA+
Sbjct: 177 XQFRLEF-YKDSELALILQKAALKLNKTCEEKAAL--EIAK 214
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 477 LPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKD 536
LP +GR I ++H+++ E+ + + I+ L + TGAEL+++ EAG+ R
Sbjct: 7 LPDLEGRANIFRIHSKSMSV----ERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR 62
Query: 537 LDYIGQEELLEALKR 551
+++ L+A+ +
Sbjct: 63 RKVATEKDFLKAVDK 77
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 17/122 (13%)
Query: 306 DDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGV 365
++ G E +K + E + + K + + I C L GPPG GKT LAK+IA G
Sbjct: 81 EEHHGLEKVKERILEYLAVQKLTKSLKGP-ILC-----LAGPPGVGKTSLAKSIAKSLGR 134
Query: 366 PF--FAANGT-DFVEM------FVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSK-RG 415
F + G D E+ +VG R+ A P + +DEID + S RG
Sbjct: 135 KFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG 193
Query: 416 GP 417
P
Sbjct: 194 DP 195
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 57/116 (49%), Gaps = 25/116 (21%)
Query: 304 TFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA 363
T D+ GQ+ E+++ LK E +N P +L GPPGTGKT A A+A +
Sbjct: 15 TLDEVVGQD-------EVIQRLKGYVERKN----IPH-LLFSGPPGTGKTATAIALARD- 61
Query: 364 GVPFFAANGTD-FVEMF------VGVAASRVKDLFASAR-SFAP-SIIFIDEIDAI 410
F N D F+EM + V ++K+ +A AP IIF+DE DA+
Sbjct: 62 ---LFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADAL 114
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 57/116 (49%), Gaps = 25/116 (21%)
Query: 304 TFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA 363
T D+ GQ+ E+++ LK E +N P +L GPPGTGKT A A+A +
Sbjct: 15 TLDEVVGQD-------EVIQRLKGYVERKN----IPH-LLFSGPPGTGKTATAIALARD- 61
Query: 364 GVPFFAANGTD-FVEMF------VGVAASRVKDLFASAR-SFAP-SIIFIDEIDAI 410
F N D F+EM + V ++K+ +A AP IIF+DE DA+
Sbjct: 62 ---LFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADAL 114
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 330 EFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAG--VPFFAANGTDF--VEMFVGVAAS 385
E +G + VL+ G PGTGKT +A +A G PF A G++ +EM A +
Sbjct: 61 EMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALT 120
Query: 386 RV--KDLFASARSFAPSIIFIDEIDAIGSKRGG 416
+ + + ++ A + + EID I S+ G
Sbjct: 121 QAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQG 153
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 13/90 (14%)
Query: 340 KGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDF-VEMFVGVAASRVKDLFASARSFA 398
+ +L+GPPG GKT A +A E G N +D + + D + F
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFK 137
Query: 399 PS-----------IIFIDEIDAI-GSKRGG 416
+ +I +DE+D + G RGG
Sbjct: 138 HNEEAQNLNGKHFVIIMDEVDGMSGGDRGG 167
>pdb|2V50|A Chain A, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|B Chain B, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|C Chain C, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|D Chain D, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|E Chain E, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|F Chain F, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
Length = 1052
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 602 SIRSQPNMRYAEISGRVFSRKNDYLNA---IVRACAPRVIEEQMFGIDNMCWISSKATLD 658
SI S P +Y I+ + + Y A V+ +VIE+QM GIDN+ +ISS++ D
Sbjct: 26 SILSLPVNQYPAIAPPAIAVQVSYPGASAETVQDTVVQVIEQQMNGIDNLRYISSESNSD 85
Query: 659 AS 660
S
Sbjct: 86 GS 87
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 15/79 (18%)
Query: 342 VLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFV-------EMFVGVAASRVKDLFASA 394
+L +GPPGTGKT A+A E + N ++ V + + V +++KD FAS
Sbjct: 49 LLFYGPPGTGKTSTIVALARE----IYGKNYSNMVLELNASDDRGIDVVRNQIKD-FAST 103
Query: 395 R---SFAPSIIFIDEIDAI 410
R S +I +DE DA+
Sbjct: 104 RQIFSKGFKLIILDEADAM 122
>pdb|3VLF|B Chain B, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLF|D Chain D, Crystal Structure Of Yeast Proteasome Interacting Protein
Length = 88
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 481 DGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDLDYI 540
+GR I ++H+++ E+ + + I+ L + TGAEL+++ EAG R
Sbjct: 4 EGRANIFRIHSKSXSV----ERGIRWELISRLCPNSTGAELRSVCTEAGXFAIRARRKVA 59
Query: 541 GQEELLEAL 549
+++ L+A+
Sbjct: 60 TEKDFLKAV 68
>pdb|2DI4|A Chain A, Crystal Structure Of The Ftsh Protease Domain
pdb|2DI4|B Chain B, Crystal Structure Of The Ftsh Protease Domain
Length = 238
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 12/134 (8%)
Query: 622 KNDYLNAIVRACAPRVIEEQMFGIDNMCWISSKATLDASRLAEFLILQTGMT-AFGKAYY 680
K D N I+ R EE FG D + + A+ LA ++ GM+ G
Sbjct: 67 KKDLYNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAI 126
Query: 681 RNQS-----------DLVPNLATKLEALRDEYMRFAVEKCASVLREYHSAVETITDILLE 729
R + D P+L +++ + EK +++ EY ++ + LLE
Sbjct: 127 RRVANPFLGGMTTAVDTSPDLLREIDEEVKRIITEQYEKAKAIVEEYKEPLKAVVKKLLE 186
Query: 730 KGEIKAEEIWDIYK 743
K I EE +++K
Sbjct: 187 KETITCEEFVEVFK 200
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 43/192 (22%)
Query: 340 KGVLLHGPPGTGKTLLAK------AIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFAS 393
+G++L GPPG+GKT++ ++ G+ F T+ + A R + +
Sbjct: 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILS----ALHRHTNYVTT 1323
Query: 394 AR--SFAPS------IIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGF----- 440
++ + P ++F DEI+ P + G++ L+ L E GF
Sbjct: 1324 SKGLTLLPKSDIKNLVLFCDEINL-------PKLDKYGSQNVVLFLRQLMEKQGFWKTPE 1376
Query: 441 --KVSTSQVLVIGATNRLDILDPALL----RKGRFDKIVRVGLPSKDGRFAILKVHARNK 494
V+ ++ ++GA N DP + R R I+ +G PS I +++ +
Sbjct: 1377 NKWVTIERIHIVGACN--PPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYEIYYKAI 1434
Query: 495 Y-----FRSEEE 501
+ FRS E
Sbjct: 1435 FKLVPEFRSYTE 1446
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 43/192 (22%)
Query: 340 KGVLLHGPPGTGKTLLAK------AIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFAS 393
+G++L GPPG+GKT++ ++ G+ F T+ + A R + +
Sbjct: 1049 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILS----ALHRHTNYVTT 1104
Query: 394 AR--SFAPS------IIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGF----- 440
++ + P ++F DEI+ P + G++ L+ L E GF
Sbjct: 1105 SKGLTLLPKSDIKNLVLFCDEINL-------PKLDKYGSQNVVLFLRQLMEKQGFWKTPE 1157
Query: 441 --KVSTSQVLVIGATNRLDILDPALL----RKGRFDKIVRVGLPSKDGRFAILKVHARNK 494
V+ ++ ++GA N DP + R R I+ +G PS I +++ +
Sbjct: 1158 NKWVTIERIHIVGACN--PPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYEIYYKAI 1215
Query: 495 Y-----FRSEEE 501
+ FRS E
Sbjct: 1216 FKLVPEFRSYTE 1227
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 339 PKGV--LLHGPPGTGKTLLAKAIAGE 362
PKG+ L+ G PGTGKT +A+ IA E
Sbjct: 8 PKGINILITGTPGTGKTSMAEMIAAE 33
>pdb|3RP2|A Chain A, The Structure Of Rat Mast Cell Protease Ii At
1.9-Angstroms Resolution
pdb|3RP2|B Chain B, The Structure Of Rat Mast Cell Protease Ii At
1.9-Angstroms Resolution
Length = 224
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 703 RFAVEKCASVLREYHSAVETITDILLEKGEIKAEEIWDIYKKAPQIPQPAVSPVDEYGAL 762
+ VEK ++ E +++V + DI+L K E K E + +P P+ S GA+
Sbjct: 69 KIKVEK--QIIHESYNSVPNLHDIMLLKLEKKVE----LTPAVNVVPLPSPSDFIHPGAM 122
Query: 763 IYAGRWGIQGVSLPGRATF 781
+A WG GV P T
Sbjct: 123 CWAAGWGKTGVRDPTSYTL 141
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 342 VLLHGPPGTGKTLLAKAIA--GEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAP 399
++L GPPGTGKT LA+ IA A V +A + E+ + +R ++ A R
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERAR-QNRNAGRR---- 107
Query: 400 SIIFIDEI 407
+I+F+DE+
Sbjct: 108 TILFVDEV 115
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFF 368
+LL G PG GKT L K +A ++G+ +
Sbjct: 6 NILLTGTPGVGKTTLGKELASKSGLKYI 33
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 59/147 (40%), Gaps = 30/147 (20%)
Query: 343 LLHGPPGTGKTLLAKAIA---GEAGVPFFAANGT----DFVEMFVGVA-----ASRVKDL 390
LL G G GKT +A+ +A + VP A+ T D + G R K L
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 270
Query: 391 FASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVI 450
SI+FIDEI I G GG L++ L +S+ ++ VI
Sbjct: 271 LKQLEQDTNSILFIDEIHTI----IGAGAASGGQVDAANLIKPL-------LSSGKIRVI 319
Query: 451 GATNRLDIL-----DPALLRKGRFDKI 472
G+T + D AL R RF KI
Sbjct: 320 GSTTYQEFSNIFEKDRALAR--RFQKI 344
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 330 EFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAG--VPFFAANGTDFVEM 378
E +G + VL+ G PGTGKT +A A G PF A G++ +
Sbjct: 76 EXIREGKIAGRAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSL 126
>pdb|3EP1|A Chain A, Structure Of The Pgrp-Hd From Alvinella Pompejana
pdb|3EP1|B Chain B, Structure Of The Pgrp-Hd From Alvinella Pompejana
Length = 176
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 756 VDEYGALIYAGR-WGIQGVSLPGRATFAPGNVGFATFGAPRPMQTLTVSDETWKLIDSIW 814
+D+ G +IY GR WG+ G GR + + G FG P Q L D KLI I
Sbjct: 84 IDQDG-VIYEGRGWGVVGQHTKGRDSHSIGVAVIGDFGKKEPSQAL--QDALSKLI--IC 138
Query: 815 DKRVEEIKAEASM 827
+ EE+ + A +
Sbjct: 139 GQAAEELSSGARL 151
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 342 VLLHGPPGTGKTLLAKAIAGEAGVPFF 368
+LL G PG GKT L K +A ++G+ +
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSGLKYI 40
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 346 GPPGTGKTLLAKAIAGEAGVPFFAANG-------TDFVEMFVGVAASRVKDLFASARSFA 398
G PGTGKT +A +AG + G D V ++G A + K++ A
Sbjct: 67 GNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAMG-- 124
Query: 399 PSIIFIDE 406
++FIDE
Sbjct: 125 -GVLFIDE 131
>pdb|2W58|A Chain A, Crystal Structure Of The Dnai
pdb|2W58|B Chain B, Crystal Structure Of The Dnai
Length = 202
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 340 KGVLLHGPPGTGKTLLAKAIAGE 362
KG+ LHG G GKT L AIA E
Sbjct: 55 KGLYLHGSFGVGKTYLLAAIANE 77
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 346 GPPGTGKTLLAKAIAGEAGVPFFAANG-------TDFVEMFVGVAASRVKDLFASARSFA 398
G PGTGKT +A +AG + G D V ++G A + K++ A
Sbjct: 74 GNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAMG-- 131
Query: 399 PSIIFIDE 406
++FIDE
Sbjct: 132 -GVLFIDE 138
>pdb|3BDZ|A Chain A, The Role Of Asn 242 In P450cin
pdb|3BDZ|B Chain B, The Role Of Asn 242 In P450cin
pdb|3BE0|A Chain A, The Role Of Asn 242 In P450cin
pdb|3BE0|B Chain B, The Role Of Asn 242 In P450cin
Length = 397
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 284 LGSLGKSRAKFISAE---ETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPK 340
LG G A F + ETT + + + G ++ +EI +++N + F NKG+ P+
Sbjct: 14 LGPDGTPHAFFEALRDEAETTPIGWSEAYGGHWVVAGYKEIQAVIQNTKAFSNKGVTFPR 73
>pdb|1T2B|A Chain A, Crystal Structure Of Cytochrome P450cin Complexed With Its
Substrate 1,8-Cineole
pdb|1T2B|B Chain B, Crystal Structure Of Cytochrome P450cin Complexed With Its
Substrate 1,8-Cineole
Length = 397
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 284 LGSLGKSRAKFISAE---ETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPK 340
LG G A F + ETT + + + G ++ +EI +++N + F NKG+ P+
Sbjct: 14 LGPDGTPHAFFEALRDEAETTPIGWSEAYGGHWVVAGYKEIQAVIQNTKAFSNKGVTFPR 73
>pdb|4FB2|A Chain A, Crystal Structure Of Substrate-Free P450cin
pdb|4FB2|B Chain B, Crystal Structure Of Substrate-Free P450cin
pdb|4FB2|C Chain C, Crystal Structure Of Substrate-Free P450cin
pdb|4FB2|D Chain D, Crystal Structure Of Substrate-Free P450cin
pdb|4FYZ|A Chain A, Crystal Structure Of Nitrosyl Cytochrome P450cin
pdb|4FYZ|B Chain B, Crystal Structure Of Nitrosyl Cytochrome P450cin
pdb|4FMX|A Chain A, Crystal Structure Of Substrate-Bound P450cin
pdb|4FMX|B Chain B, Crystal Structure Of Substrate-Bound P450cin
Length = 398
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 284 LGSLGKSRAKFISAE---ETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPK 340
LG G A F + ETT + + + G ++ +EI +++N + F NKG+ P+
Sbjct: 15 LGPDGTPHAFFEALRDEAETTPIGWSEAYGGHWVVAGYKEIQAVIQNTKAFSNKGVTFPR 74
>pdb|1ZP6|A Chain A, Crystal Structure Of Atu3015, A Putative Cytidylate Kinase
From Agrobacterium Tumefaciens, Northeast Structural
Genomics Target Atr62
Length = 191
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 342 VLLHGPPGTGKTLLAKAIAGEAGVP 366
+LL G PG+GK+ +A+A+A GVP
Sbjct: 12 LLLSGHPGSGKSTIAEALANLPGVP 36
>pdb|2ZE5|A Chain A, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase
pdb|2ZE6|A Chain A, Crystal Structure Of Adenosine
Phosphate-isopentenyltransferase Complexed With
Substrate Analog, Dmaspp
pdb|2ZE7|A Chain A, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With Zinc Ion
And Substrate Analog, Dmaspp
pdb|2ZE8|A Chain A, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
pdb|2ZE8|B Chain B, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
pdb|2ZE8|C Chain C, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
pdb|2ZE8|D Chain D, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
Length = 253
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 68/171 (39%), Gaps = 17/171 (9%)
Query: 343 LLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSII 402
L++GP +GKT +A IA E G P A + + ++ S R I
Sbjct: 5 LIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRR-----I 59
Query: 403 FIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPA 462
++D + G + E +++ E+D K +L G+ + L+ + +
Sbjct: 60 YLD----------SRPLTEGILDAESAHRRLIFEVDWRKSEEGLILEGGSISLLNCMAKS 109
Query: 463 LLRKGRFD-KIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAEL 512
+ F + R+ L D F + F E++ LL+E+AEL
Sbjct: 110 PFWRSGFQWHVKRLRLGDSDA-FLTRAKQRVAEMFAIREDRPSLLEELAEL 159
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 10/68 (14%)
Query: 346 GPPGTGKTLLAKAIAGEAGVPFFAANG-------TDFVEMFVGVAASRVKDLFASARSFA 398
G PGTGKT +A AG + G D V ++G A + K++ A
Sbjct: 74 GNPGTGKTTVALKXAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAXG-- 131
Query: 399 PSIIFIDE 406
++FIDE
Sbjct: 132 -GVLFIDE 138
>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
Length = 287
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 303 VTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGE 362
V F D + + L+E+++ K + P LL G PG+GKT L AI E
Sbjct: 5 VNFTDKQFENRLNDNLEELIQ--------GKKAVESPTAFLLGGQPGSGKTSLRSAIFEE 56
Query: 363 A 363
Sbjct: 57 T 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,965,418
Number of Sequences: 62578
Number of extensions: 1010271
Number of successful extensions: 3035
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 2837
Number of HSP's gapped (non-prelim): 117
length of query: 845
length of database: 14,973,337
effective HSP length: 107
effective length of query: 738
effective length of database: 8,277,491
effective search space: 6108788358
effective search space used: 6108788358
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)