Query 043051
Match_columns 845
No_of_seqs 662 out of 4178
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 12:20:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043051.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043051hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0465 HflB ATP-dependent Zn 100.0 1E-106 3E-111 927.7 51.1 572 113-746 2-592 (596)
2 KOG0734 AAA+-type ATPase conta 100.0 1E-101 2E-106 850.9 39.1 431 295-745 293-735 (752)
3 KOG0731 AAA+-type ATPase conta 100.0 5E-100 1E-104 885.3 48.7 573 135-749 163-753 (774)
4 CHL00176 ftsH cell division pr 100.0 3.5E-91 7.5E-96 820.9 61.1 558 136-748 50-629 (638)
5 PRK10733 hflB ATP-dependent me 100.0 6.2E-87 1.3E-91 791.4 64.2 570 113-746 7-597 (644)
6 TIGR01241 FtsH_fam ATP-depende 100.0 4E-78 8.7E-83 699.0 50.4 475 232-743 2-495 (495)
7 COG1222 RPT1 ATP-dependent 26S 100.0 8E-57 1.7E-61 481.5 25.0 249 298-552 143-392 (406)
8 CHL00206 ycf2 Ycf2; Provisiona 100.0 2.2E-53 4.8E-58 521.5 28.7 311 330-674 1621-1983(2281)
9 KOG0730 AAA+-type ATPase [Post 100.0 3.2E-49 6.9E-54 448.7 24.8 245 300-553 428-675 (693)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 3.8E-47 8.1E-52 425.6 23.7 246 299-553 504-770 (802)
11 KOG0727 26S proteasome regulat 100.0 1.1E-43 2.4E-48 363.6 21.7 253 294-552 143-396 (408)
12 KOG0728 26S proteasome regulat 100.0 1E-43 2.2E-48 363.5 20.5 249 298-552 139-388 (404)
13 KOG0733 Nuclear AAA ATPase (VC 100.0 8.4E-44 1.8E-48 398.8 20.7 228 300-535 184-414 (802)
14 KOG0652 26S proteasome regulat 100.0 1E-43 2.3E-48 365.1 19.1 249 298-552 163-412 (424)
15 KOG0729 26S proteasome regulat 100.0 1.7E-43 3.6E-48 364.5 18.1 250 297-552 168-418 (435)
16 KOG0736 Peroxisome assembly fa 100.0 6.2E-43 1.3E-47 400.0 23.5 256 291-553 657-933 (953)
17 KOG0726 26S proteasome regulat 100.0 2.8E-43 6.1E-48 366.6 14.9 249 298-552 177-426 (440)
18 COG1223 Predicted ATPase (AAA+ 100.0 4.4E-42 9.6E-47 353.5 20.7 242 298-552 113-355 (368)
19 KOG0738 AAA+-type ATPase [Post 100.0 4.9E-41 1.1E-45 361.7 21.1 245 299-553 205-470 (491)
20 PTZ00454 26S protease regulato 100.0 3.5E-40 7.7E-45 371.1 27.7 248 299-552 138-386 (398)
21 PRK03992 proteasome-activating 100.0 4.6E-39 1E-43 362.4 26.9 248 300-553 125-373 (389)
22 PTZ00361 26 proteosome regulat 100.0 5.6E-39 1.2E-43 363.9 24.8 249 298-552 175-424 (438)
23 COG0464 SpoVK ATPases of the A 100.0 6.8E-38 1.5E-42 363.4 25.7 249 300-555 236-486 (494)
24 KOG0735 AAA+-type ATPase [Post 100.0 3.8E-38 8.2E-43 357.8 22.4 243 284-535 645-888 (952)
25 KOG0739 AAA+-type ATPase [Post 100.0 1.1E-38 2.5E-43 333.2 14.2 227 299-535 126-353 (439)
26 TIGR01243 CDC48 AAA family ATP 100.0 1.6E-37 3.5E-42 375.5 26.3 247 300-554 447-712 (733)
27 PF01434 Peptidase_M41: Peptid 100.0 2.5E-37 5.3E-42 321.5 20.0 191 541-741 1-213 (213)
28 KOG0651 26S proteasome regulat 100.0 3.2E-38 6.9E-43 332.3 12.1 248 299-552 125-373 (388)
29 KOG0737 AAA+-type ATPase [Post 100.0 3.6E-37 7.7E-42 332.4 20.4 227 299-535 85-314 (386)
30 TIGR01242 26Sp45 26S proteasom 100.0 2.1E-36 4.6E-41 338.2 26.9 247 300-552 116-363 (364)
31 CHL00195 ycf46 Ycf46; Provisio 100.0 1.2E-36 2.6E-41 349.5 24.8 244 300-554 222-465 (489)
32 TIGR03689 pup_AAA proteasome A 100.0 3.1E-33 6.8E-38 321.2 27.0 251 298-552 174-478 (512)
33 KOG0730 AAA+-type ATPase [Post 100.0 3.2E-32 7E-37 310.4 23.0 278 301-600 180-465 (693)
34 KOG0741 AAA+-type ATPase [Post 100.0 6.5E-32 1.4E-36 299.3 18.8 286 300-588 213-531 (744)
35 PLN00020 ribulose bisphosphate 100.0 2.4E-31 5.1E-36 290.1 21.2 263 301-586 110-394 (413)
36 KOG0732 AAA+-type ATPase conta 100.0 3.4E-31 7.3E-36 316.7 20.6 251 300-558 259-531 (1080)
37 TIGR01243 CDC48 AAA family ATP 100.0 1.2E-30 2.7E-35 315.8 24.9 248 300-556 172-439 (733)
38 KOG0740 AAA+-type ATPase [Post 100.0 7.6E-30 1.6E-34 284.3 18.1 248 299-556 146-408 (428)
39 KOG0742 AAA+-type ATPase [Post 99.9 3.1E-24 6.7E-29 232.6 19.6 293 242-550 289-610 (630)
40 CHL00181 cbbX CbbX; Provisiona 99.9 2.2E-21 4.7E-26 210.7 23.4 216 305-534 22-256 (287)
41 TIGR02881 spore_V_K stage V sp 99.9 8.8E-21 1.9E-25 203.2 22.2 212 305-534 5-240 (261)
42 TIGR02880 cbbX_cfxQ probable R 99.9 7.8E-21 1.7E-25 206.1 20.7 212 306-534 22-255 (284)
43 KOG0743 AAA+-type ATPase [Post 99.9 5.8E-21 1.3E-25 212.1 17.4 233 300-552 195-434 (457)
44 PF00004 AAA: ATPase family as 99.9 5.2E-21 1.1E-25 181.1 14.5 131 342-477 1-132 (132)
45 PF05496 RuvB_N: Holliday junc 99.8 3.2E-20 6.9E-25 192.0 17.8 197 299-528 17-225 (233)
46 COG2256 MGS1 ATPase related to 99.8 7.2E-20 1.6E-24 200.5 17.4 224 298-565 16-251 (436)
47 PRK00080 ruvB Holliday junctio 99.8 5.5E-19 1.2E-23 195.4 23.0 221 299-552 18-250 (328)
48 TIGR02902 spore_lonB ATP-depen 99.8 2.5E-19 5.5E-24 209.6 21.4 266 240-552 8-332 (531)
49 TIGR00635 ruvB Holliday juncti 99.8 1.1E-18 2.3E-23 190.4 22.6 216 304-552 2-229 (305)
50 KOG0735 AAA+-type ATPase [Post 99.8 4.5E-18 9.7E-23 195.1 22.5 268 306-588 408-684 (952)
51 COG2255 RuvB Holliday junction 99.8 5.7E-18 1.2E-22 178.4 20.4 220 300-552 20-251 (332)
52 KOG0744 AAA+-type ATPase [Post 99.8 2.5E-18 5.5E-23 183.1 15.9 242 305-551 141-413 (423)
53 KOG0736 Peroxisome assembly fa 99.8 9E-18 1.9E-22 194.3 19.9 211 334-555 426-656 (953)
54 TIGR02639 ClpA ATP-dependent C 99.8 7.5E-18 1.6E-22 204.5 20.1 227 300-552 176-429 (731)
55 COG0464 SpoVK ATPases of the A 99.8 4.7E-17 1E-21 189.4 23.3 219 325-554 4-228 (494)
56 KOG2028 ATPase related to the 99.8 1.2E-17 2.6E-22 179.9 16.4 237 297-579 129-389 (554)
57 PRK14956 DNA polymerase III su 99.7 4.6E-17 9.9E-22 185.9 20.9 207 297-549 9-243 (484)
58 PRK13342 recombination factor 99.7 7E-17 1.5E-21 184.1 20.9 207 298-552 4-219 (413)
59 PRK07003 DNA polymerase III su 99.7 1.5E-16 3.3E-21 187.6 22.3 209 298-552 8-244 (830)
60 PRK14962 DNA polymerase III su 99.7 1.2E-16 2.5E-21 184.4 20.9 209 298-552 6-242 (472)
61 TIGR00763 lon ATP-dependent pr 99.7 8.3E-17 1.8E-21 196.5 20.8 227 306-550 320-584 (775)
62 PRK14960 DNA polymerase III su 99.7 1.7E-16 3.7E-21 185.6 21.5 209 298-552 7-243 (702)
63 PRK04195 replication factor C 99.7 2.2E-16 4.7E-21 183.4 22.3 215 294-550 2-223 (482)
64 PRK00149 dnaA chromosomal repl 99.7 4.7E-16 1E-20 179.2 24.4 224 300-552 116-349 (450)
65 PRK12323 DNA polymerase III su 99.7 9.7E-17 2.1E-21 187.3 18.3 209 298-552 8-249 (700)
66 PRK14958 DNA polymerase III su 99.7 2.3E-16 5E-21 183.6 19.9 210 297-552 7-244 (509)
67 PRK14961 DNA polymerase III su 99.7 5.5E-16 1.2E-20 173.9 22.0 215 298-552 8-244 (363)
68 PRK06645 DNA polymerase III su 99.7 4.8E-16 1E-20 180.2 22.0 220 296-552 11-256 (507)
69 PRK12402 replication factor C 99.7 6.3E-16 1.4E-20 170.3 21.6 216 295-552 4-249 (337)
70 PRK07994 DNA polymerase III su 99.7 4.1E-16 8.9E-21 184.4 21.2 208 298-551 8-243 (647)
71 PLN03025 replication factor C 99.7 3.6E-16 7.8E-21 172.4 19.3 208 295-550 2-221 (319)
72 PRK11034 clpA ATP-dependent Cl 99.7 2.4E-16 5.1E-21 190.3 18.8 226 301-552 181-433 (758)
73 PRK06893 DNA replication initi 99.7 1.1E-15 2.4E-20 160.9 21.7 213 300-550 10-228 (229)
74 TIGR00362 DnaA chromosomal rep 99.7 2.2E-15 4.9E-20 171.3 25.6 222 300-552 104-337 (405)
75 PRK13341 recombination factor 99.7 6.1E-16 1.3E-20 186.0 20.9 215 295-552 17-247 (725)
76 PRK14949 DNA polymerase III su 99.7 1E-15 2.3E-20 183.6 22.1 212 298-549 8-241 (944)
77 PRK14964 DNA polymerase III su 99.7 7.7E-16 1.7E-20 177.4 20.2 209 298-552 5-241 (491)
78 PRK14088 dnaA chromosomal repl 99.7 2.8E-15 6E-20 172.1 23.9 225 300-552 99-332 (440)
79 PHA02544 44 clamp loader, smal 99.7 2.9E-15 6.4E-20 164.2 22.4 211 293-547 8-226 (316)
80 TIGR03345 VI_ClpV1 type VI sec 99.7 1.1E-15 2.4E-20 187.5 21.0 224 300-550 181-429 (852)
81 PRK08691 DNA polymerase III su 99.7 9.5E-16 2.1E-20 180.8 19.4 215 298-552 8-244 (709)
82 PRK14951 DNA polymerase III su 99.7 1.5E-15 3.3E-20 179.2 21.1 210 297-552 7-249 (618)
83 TIGR02928 orc1/cdc6 family rep 99.7 5.2E-15 1.1E-19 165.2 23.8 225 304-552 13-274 (365)
84 PRK05563 DNA polymerase III su 99.7 3.3E-15 7.2E-20 176.0 21.4 209 298-552 8-244 (559)
85 PRK14963 DNA polymerase III su 99.7 5.4E-15 1.2E-19 171.9 22.4 208 298-552 6-240 (504)
86 PRK14969 DNA polymerase III su 99.7 2.1E-15 4.5E-20 176.5 19.0 209 298-552 8-244 (527)
87 TIGR03420 DnaA_homol_Hda DnaA 99.7 8.7E-15 1.9E-19 152.4 21.3 208 301-549 10-225 (226)
88 PRK14086 dnaA chromosomal repl 99.7 1.4E-14 3E-19 169.7 25.2 224 300-552 282-515 (617)
89 PRK12422 chromosomal replicati 99.7 1.7E-14 3.7E-19 165.6 25.5 228 300-552 105-343 (445)
90 PRK14957 DNA polymerase III su 99.7 4.4E-15 9.5E-20 173.3 20.7 209 297-551 7-243 (546)
91 TIGR02397 dnaX_nterm DNA polym 99.6 6.2E-15 1.4E-19 163.8 20.8 211 296-552 4-242 (355)
92 PRK08903 DnaA regulatory inact 99.6 2.4E-14 5.2E-19 150.0 22.9 204 300-550 12-224 (227)
93 PRK00411 cdc6 cell division co 99.6 2.3E-14 5E-19 161.7 24.4 226 303-552 27-282 (394)
94 PRK14952 DNA polymerase III su 99.6 1.1E-14 2.3E-19 171.5 21.9 210 298-552 5-244 (584)
95 PRK05896 DNA polymerase III su 99.6 5.4E-15 1.2E-19 172.9 19.0 209 296-550 6-242 (605)
96 PRK14965 DNA polymerase III su 99.6 5.8E-15 1.2E-19 174.6 19.3 208 298-552 8-244 (576)
97 PRK07133 DNA polymerase III su 99.6 8E-15 1.7E-19 174.5 20.5 216 296-551 8-242 (725)
98 PRK14959 DNA polymerase III su 99.6 8.8E-15 1.9E-19 171.9 20.1 210 297-552 7-244 (624)
99 CHL00095 clpC Clp protease ATP 99.6 1.2E-14 2.7E-19 178.5 22.3 202 301-532 174-401 (821)
100 PRK10865 protein disaggregatio 99.6 4.8E-15 1E-19 182.3 18.1 167 300-493 172-356 (857)
101 PRK08084 DNA replication initi 99.6 3.2E-14 7E-19 150.5 22.0 210 300-550 16-234 (235)
102 PRK14970 DNA polymerase III su 99.6 1.1E-14 2.3E-19 163.5 19.3 218 295-552 6-233 (367)
103 PRK08451 DNA polymerase III su 99.6 2.2E-14 4.8E-19 166.7 22.4 208 298-551 6-241 (535)
104 PRK07764 DNA polymerase III su 99.6 1.2E-14 2.6E-19 176.8 21.0 210 298-552 7-246 (824)
105 KOG0989 Replication factor C, 99.6 7.8E-15 1.7E-19 156.4 16.4 195 295-529 25-235 (346)
106 PRK07940 DNA polymerase III su 99.6 1E-14 2.3E-19 164.8 18.4 189 304-523 3-213 (394)
107 PRK14953 DNA polymerase III su 99.6 1.9E-14 4.1E-19 166.9 20.4 217 296-552 6-244 (486)
108 PRK09111 DNA polymerase III su 99.6 3E-14 6.5E-19 168.4 22.0 216 297-552 15-257 (598)
109 TIGR03346 chaperone_ClpB ATP-d 99.6 1.4E-14 3.1E-19 178.5 19.6 208 300-534 167-398 (852)
110 PRK06305 DNA polymerase III su 99.6 3.7E-14 8.1E-19 163.2 21.2 209 298-552 9-246 (451)
111 PRK14955 DNA polymerase III su 99.6 2E-14 4.4E-19 163.1 18.6 219 298-552 8-257 (397)
112 PRK08727 hypothetical protein; 99.6 1.1E-13 2.3E-18 146.4 22.8 211 300-552 13-231 (233)
113 PRK00440 rfc replication facto 99.6 5.7E-14 1.2E-18 153.5 21.1 211 294-552 5-226 (319)
114 PRK06647 DNA polymerase III su 99.6 4.6E-14 1E-18 166.1 20.8 209 298-552 8-244 (563)
115 PF00308 Bac_DnaA: Bacterial d 99.6 1.9E-13 4E-18 143.3 22.3 203 301-532 3-216 (219)
116 PRK05642 DNA replication initi 99.6 1.6E-13 3.5E-18 145.1 22.0 213 300-550 13-233 (234)
117 COG2812 DnaX DNA polymerase II 99.6 1.4E-14 3.1E-19 166.7 14.9 214 299-552 9-244 (515)
118 PRK14087 dnaA chromosomal repl 99.6 2E-13 4.2E-18 157.3 24.4 224 302-552 111-348 (450)
119 PRK05342 clpX ATP-dependent pr 99.6 7E-14 1.5E-18 158.8 20.2 222 308-532 73-378 (412)
120 PRK06620 hypothetical protein; 99.6 1.3E-13 2.8E-18 144.0 20.0 199 300-549 10-213 (214)
121 PRK14948 DNA polymerase III su 99.6 9.9E-14 2.1E-18 164.9 21.5 214 298-552 8-245 (620)
122 PRK14954 DNA polymerase III su 99.6 1.1E-13 2.3E-18 164.1 21.1 219 298-552 8-257 (620)
123 PTZ00112 origin recognition co 99.6 1.2E-13 2.5E-18 163.9 20.9 218 306-552 755-1006(1164)
124 TIGR00390 hslU ATP-dependent p 99.5 1.4E-13 3E-18 154.5 18.7 179 307-487 13-342 (441)
125 PRK05201 hslU ATP-dependent pr 99.5 1.7E-13 3.7E-18 153.9 19.0 180 307-488 16-345 (443)
126 COG1224 TIP49 DNA helicase TIP 99.5 4.1E-13 8.9E-18 145.4 20.9 129 399-552 292-432 (450)
127 PRK14950 DNA polymerase III su 99.5 2.6E-13 5.6E-18 161.2 21.5 215 298-552 8-245 (585)
128 TIGR02640 gas_vesic_GvpN gas v 99.5 6.8E-13 1.5E-17 142.6 22.1 189 340-552 22-257 (262)
129 COG0466 Lon ATP-dependent Lon 99.5 1.9E-13 4.1E-18 159.0 18.7 229 306-552 323-584 (782)
130 KOG2004 Mitochondrial ATP-depe 99.5 3.6E-14 7.8E-19 163.8 12.6 168 306-493 411-598 (906)
131 PRK14971 DNA polymerase III su 99.5 3.3E-13 7.1E-18 160.5 20.9 211 296-552 7-246 (614)
132 PRK11034 clpA ATP-dependent Cl 99.5 3.4E-13 7.5E-18 163.1 20.5 204 307-528 459-711 (758)
133 PRK10787 DNA-binding ATP-depen 99.5 3.1E-13 6.7E-18 164.5 20.1 227 307-552 323-582 (784)
134 PRK13407 bchI magnesium chelat 99.5 1.6E-13 3.6E-18 151.8 16.1 225 301-552 3-306 (334)
135 COG0593 DnaA ATPase involved i 99.5 2.6E-12 5.6E-17 144.4 24.0 223 300-552 81-313 (408)
136 TIGR02903 spore_lon_C ATP-depe 99.5 1.1E-12 2.5E-17 156.3 22.3 222 299-552 147-430 (615)
137 CHL00081 chlI Mg-protoporyphyr 99.5 5.5E-13 1.2E-17 148.2 17.4 227 300-552 11-322 (350)
138 TIGR02639 ClpA ATP-dependent C 99.5 7.2E-13 1.6E-17 161.2 20.1 203 306-529 454-708 (731)
139 TIGR00382 clpX endopeptidase C 99.5 8.4E-13 1.8E-17 149.6 19.2 223 307-532 78-384 (413)
140 TIGR02030 BchI-ChlI magnesium 99.5 1.3E-12 2.8E-17 145.0 18.5 223 304-552 2-309 (337)
141 PF05673 DUF815: Protein of un 99.5 4.4E-12 9.5E-17 133.4 20.7 198 300-527 21-244 (249)
142 COG3829 RocR Transcriptional r 99.5 3E-13 6.6E-18 153.9 12.2 221 300-551 239-497 (560)
143 COG1474 CDC6 Cdc6-related prot 99.4 9.6E-12 2.1E-16 139.6 20.7 218 308-552 19-265 (366)
144 PRK09087 hypothetical protein; 99.4 9E-12 2E-16 131.3 18.8 203 300-552 15-222 (226)
145 TIGR01650 PD_CobS cobaltochela 99.4 3.1E-12 6.7E-17 140.4 14.0 139 339-492 64-234 (327)
146 PF06068 TIP49: TIP49 C-termin 99.4 1.5E-11 3.2E-16 135.5 19.0 67 303-376 21-89 (398)
147 TIGR02442 Cob-chelat-sub cobal 99.4 9.7E-12 2.1E-16 149.0 18.9 220 304-552 2-304 (633)
148 cd00009 AAA The AAA+ (ATPases 99.4 1E-11 2.2E-16 117.4 15.2 124 339-476 19-150 (151)
149 TIGR03345 VI_ClpV1 type VI sec 99.4 1.8E-11 3.8E-16 150.8 19.7 201 306-528 566-826 (852)
150 TIGR00368 Mg chelatase-related 99.4 2.4E-11 5.2E-16 141.3 19.4 217 302-550 188-497 (499)
151 TIGR03346 chaperone_ClpB ATP-d 99.3 2.8E-11 6E-16 149.7 20.4 207 306-530 565-823 (852)
152 KOG1942 DNA helicase, TBP-inte 99.3 5.8E-11 1.3E-15 125.8 19.6 129 399-552 297-438 (456)
153 TIGR02329 propionate_PrpR prop 99.3 8.2E-12 1.8E-16 146.1 14.1 218 302-549 208-467 (526)
154 COG2204 AtoC Response regulato 99.3 1.3E-11 2.7E-16 140.8 14.9 212 302-547 137-386 (464)
155 PRK15424 propionate catabolism 99.3 1E-11 2.2E-16 145.4 14.0 211 303-546 216-479 (538)
156 CHL00095 clpC Clp protease ATP 99.3 7.5E-11 1.6E-15 145.4 21.5 204 306-528 509-777 (821)
157 PRK10865 protein disaggregatio 99.3 1.2E-10 2.5E-15 143.9 22.6 206 305-528 567-824 (857)
158 PRK07471 DNA polymerase III su 99.3 7.2E-11 1.6E-15 132.6 18.5 186 300-525 13-239 (365)
159 PHA02244 ATPase-like protein 99.3 1E-10 2.3E-15 129.9 19.2 150 302-480 93-263 (383)
160 TIGR00602 rad24 checkpoint pro 99.3 4.8E-11 1E-15 141.7 17.7 231 294-552 72-355 (637)
161 PRK10820 DNA-binding transcrip 99.3 3.4E-11 7.4E-16 141.4 16.1 214 301-545 199-447 (520)
162 KOG1969 DNA replication checkp 99.3 1.1E-10 2.4E-15 135.9 19.5 216 294-537 259-520 (877)
163 TIGR01817 nifA Nif-specific re 99.3 2.3E-11 5.1E-16 143.3 14.0 217 300-547 190-440 (534)
164 PRK09112 DNA polymerase III su 99.3 1.4E-10 2.9E-15 129.8 19.1 190 300-527 17-243 (351)
165 smart00350 MCM minichromosome 99.3 8.1E-11 1.7E-15 137.9 18.0 227 307-552 204-504 (509)
166 TIGR02974 phageshock_pspF psp 99.3 6.2E-11 1.3E-15 131.6 16.1 197 308-532 1-233 (329)
167 PRK05022 anaerobic nitric oxid 99.3 5.7E-11 1.2E-15 139.2 16.6 202 304-533 185-421 (509)
168 TIGR00764 lon_rel lon-related 99.3 9.6E-11 2.1E-15 139.6 18.6 126 424-552 231-391 (608)
169 PRK05564 DNA polymerase III su 99.3 1.3E-10 2.9E-15 127.9 17.8 170 304-516 2-183 (313)
170 COG1221 PspF Transcriptional r 99.3 2.6E-11 5.6E-16 136.1 12.3 204 300-533 72-310 (403)
171 COG0542 clpA ATP-binding subun 99.3 8.3E-11 1.8E-15 140.6 17.2 202 306-527 491-749 (786)
172 PRK11388 DNA-binding transcrip 99.3 4E-11 8.7E-16 144.2 14.6 217 302-550 321-569 (638)
173 COG3604 FhlA Transcriptional r 99.3 2.3E-11 5E-16 137.2 11.5 204 301-532 218-456 (550)
174 PRK15429 formate hydrogenlyase 99.2 1.6E-10 3.4E-15 140.2 19.0 203 302-532 372-609 (686)
175 COG0542 clpA ATP-binding subun 99.2 2.2E-10 4.7E-15 137.0 19.5 207 300-535 164-396 (786)
176 PRK13531 regulatory ATPase Rav 99.2 3.5E-10 7.6E-15 129.6 19.5 217 307-552 21-283 (498)
177 COG0714 MoxR-like ATPases [Gen 99.2 4.4E-10 9.6E-15 124.7 19.2 137 340-490 44-201 (329)
178 PF01078 Mg_chelatase: Magnesi 99.2 2.4E-11 5.3E-16 125.3 8.3 147 304-481 1-205 (206)
179 PRK07399 DNA polymerase III su 99.2 3E-10 6.5E-15 125.3 17.2 183 304-526 2-223 (314)
180 PF07728 AAA_5: AAA domain (dy 99.2 8.3E-12 1.8E-16 120.6 4.0 114 341-469 1-139 (139)
181 TIGR03015 pepcterm_ATPase puta 99.2 1.3E-09 2.8E-14 116.6 20.8 193 341-552 45-266 (269)
182 TIGR00678 holB DNA polymerase 99.2 3.1E-10 6.8E-15 115.6 15.3 144 337-515 12-183 (188)
183 PRK09862 putative ATP-dependen 99.2 6.2E-10 1.3E-14 129.3 19.5 218 303-551 188-491 (506)
184 PRK11608 pspF phage shock prot 99.2 2.2E-10 4.7E-15 127.2 15.0 201 304-532 4-240 (326)
185 PF00158 Sigma54_activat: Sigm 99.2 1.3E-10 2.7E-15 117.2 11.5 135 308-470 1-155 (168)
186 COG2607 Predicted ATPase (AAA+ 99.2 2.3E-09 5E-14 111.6 20.8 200 299-528 53-277 (287)
187 PRK04132 replication factor C 99.2 4.4E-10 9.6E-15 136.7 18.2 174 342-551 567-753 (846)
188 PF05621 TniB: Bacterial TniB 99.2 1.6E-09 3.5E-14 117.4 20.4 221 306-547 34-284 (302)
189 KOG0991 Replication factor C, 99.2 1.5E-10 3.3E-15 119.5 11.6 211 294-549 15-234 (333)
190 smart00382 AAA ATPases associa 99.2 3.3E-10 7.2E-15 105.7 12.5 123 339-478 2-147 (148)
191 TIGR02031 BchD-ChlD magnesium 99.1 1E-09 2.2E-14 130.6 18.9 194 340-552 17-258 (589)
192 COG1219 ClpX ATP-dependent pro 99.1 7.4E-10 1.6E-14 119.0 15.6 128 307-436 62-202 (408)
193 COG0470 HolB ATPase involved i 99.1 5.8E-10 1.2E-14 122.0 15.1 147 306-485 1-175 (325)
194 TIGR02915 PEP_resp_reg putativ 99.1 8.4E-10 1.8E-14 126.9 15.4 212 304-546 137-383 (445)
195 COG1239 ChlI Mg-chelatase subu 99.1 9.9E-10 2.1E-14 122.7 14.7 165 301-492 12-233 (423)
196 smart00763 AAA_PrkA PrkA AAA d 99.1 2.2E-09 4.7E-14 119.4 16.6 86 302-394 46-144 (361)
197 KOG0741 AAA+-type ATPase [Post 99.1 2.4E-09 5.2E-14 121.0 16.0 157 319-488 524-683 (744)
198 PRK05707 DNA polymerase III su 99.1 2.6E-09 5.7E-14 118.5 16.1 157 336-524 19-203 (328)
199 PF07724 AAA_2: AAA domain (Cd 99.1 5.1E-10 1.1E-14 113.1 9.2 115 340-457 4-131 (171)
200 PRK11331 5-methylcytosine-spec 99.0 2.1E-09 4.5E-14 122.5 14.4 144 305-477 174-357 (459)
201 COG0606 Predicted ATPase with 99.0 8.4E-10 1.8E-14 124.8 11.1 215 302-550 175-483 (490)
202 PRK08058 DNA polymerase III su 99.0 2E-09 4.4E-14 119.5 14.1 148 304-488 3-179 (329)
203 KOG0745 Putative ATP-dependent 99.0 5.9E-09 1.3E-13 115.8 16.4 97 340-436 227-331 (564)
204 PRK11361 acetoacetate metaboli 99.0 3.3E-09 7.2E-14 122.2 15.2 215 304-549 141-390 (457)
205 PRK10923 glnG nitrogen regulat 99.0 5E-09 1.1E-13 121.3 16.4 215 304-549 136-385 (469)
206 COG1220 HslU ATP-dependent pro 99.0 2.4E-09 5.1E-14 115.9 12.0 85 399-488 251-346 (444)
207 PTZ00111 DNA replication licen 99.0 9.6E-09 2.1E-13 124.8 18.5 162 306-486 450-652 (915)
208 KOG2680 DNA helicase TIP49, TB 99.0 1.4E-08 3.1E-13 108.2 17.4 129 399-552 289-429 (454)
209 PRK08116 hypothetical protein; 99.0 8.6E-09 1.9E-13 111.5 14.6 164 300-488 79-257 (268)
210 PRK15115 response regulator Gl 98.9 1.1E-08 2.3E-13 117.7 13.8 212 307-549 135-381 (444)
211 PF13177 DNA_pol3_delta2: DNA 98.9 9E-09 1.9E-13 103.1 10.8 134 310-478 1-161 (162)
212 PRK13765 ATP-dependent proteas 98.9 2.4E-08 5.2E-13 119.2 15.6 139 400-552 228-400 (637)
213 PRK12377 putative replication 98.9 2.4E-08 5.3E-13 106.7 14.0 133 300-456 68-206 (248)
214 PF07726 AAA_3: ATPase family 98.9 2.2E-09 4.7E-14 102.9 5.2 115 341-469 1-129 (131)
215 TIGR01818 ntrC nitrogen regula 98.9 3.6E-08 7.7E-13 114.0 16.4 214 305-549 133-381 (463)
216 PRK08181 transposase; Validate 98.8 2.9E-08 6.2E-13 107.4 13.3 100 339-456 106-209 (269)
217 KOG0990 Replication factor C, 98.8 3.3E-08 7.2E-13 106.8 13.6 199 293-533 28-238 (360)
218 PRK06871 DNA polymerase III su 98.8 6.7E-08 1.5E-12 107.0 16.2 133 337-490 22-178 (325)
219 PRK06964 DNA polymerase III su 98.8 3E-08 6.4E-13 110.6 13.2 133 336-489 18-202 (342)
220 PRK07952 DNA replication prote 98.8 4.7E-08 1E-12 104.3 13.8 133 300-456 66-205 (244)
221 PRK06526 transposase; Provisio 98.8 1.9E-08 4.2E-13 107.9 10.5 101 339-457 98-202 (254)
222 PF03215 Rad17: Rad17 cell cyc 98.8 1E-07 2.3E-12 111.6 17.1 215 294-533 7-269 (519)
223 PRK07993 DNA polymerase III su 98.8 6.4E-08 1.4E-12 107.8 14.4 151 336-515 21-196 (334)
224 PRK10365 transcriptional regul 98.8 4.5E-08 9.8E-13 112.2 12.6 212 307-549 140-386 (441)
225 KOG1514 Origin recognition com 98.8 3E-07 6.5E-12 107.7 19.1 191 341-552 424-655 (767)
226 PRK08769 DNA polymerase III su 98.8 9E-08 2E-12 105.8 14.3 153 336-518 23-203 (319)
227 PF14532 Sigma54_activ_2: Sigm 98.7 1.5E-08 3.3E-13 98.4 7.0 106 309-455 1-109 (138)
228 COG3283 TyrR Transcriptional r 98.7 2.1E-07 4.5E-12 101.7 14.4 217 300-548 198-445 (511)
229 PRK13406 bchD magnesium chelat 98.7 1.9E-07 4.1E-12 110.9 15.1 193 340-552 26-250 (584)
230 PRK08939 primosomal protein Dn 98.7 1.5E-07 3.2E-12 103.8 13.2 133 302-457 123-262 (306)
231 KOG2035 Replication factor C, 98.7 3.7E-07 8E-12 97.0 14.4 184 295-523 2-224 (351)
232 PF01637 Arch_ATPase: Archaeal 98.6 5.9E-07 1.3E-11 92.7 15.6 167 339-521 20-231 (234)
233 PRK09183 transposase/IS protei 98.6 1.7E-07 3.7E-12 101.0 11.5 101 339-456 102-206 (259)
234 PRK08699 DNA polymerase III su 98.6 3E-07 6.6E-12 102.1 13.1 131 337-489 19-183 (325)
235 COG1484 DnaC DNA replication p 98.6 3E-07 6.6E-12 98.8 12.6 102 339-457 105-210 (254)
236 PRK06090 DNA polymerase III su 98.6 4.2E-07 9.1E-12 100.5 13.1 129 336-488 22-177 (319)
237 COG3284 AcoR Transcriptional a 98.6 9.8E-08 2.1E-12 111.2 7.3 190 340-552 337-557 (606)
238 PRK06835 DNA replication prote 98.5 7.1E-07 1.5E-11 99.3 13.6 109 340-465 184-303 (329)
239 KOG1970 Checkpoint RAD17-RFC c 98.5 1.2E-06 2.5E-11 100.5 15.0 217 294-532 70-320 (634)
240 PRK06921 hypothetical protein; 98.5 6.4E-07 1.4E-11 96.9 12.4 113 339-465 117-238 (266)
241 PF01695 IstB_IS21: IstB-like 98.5 1.8E-07 3.9E-12 95.3 7.3 100 339-456 47-150 (178)
242 KOG1051 Chaperone HSP104 and r 98.5 7.6E-07 1.6E-11 108.5 12.8 134 306-457 562-712 (898)
243 KOG2227 Pre-initiation complex 98.5 3E-06 6.6E-11 95.7 16.6 204 306-535 150-382 (529)
244 PF13173 AAA_14: AAA domain 98.5 1.4E-06 3E-11 83.5 11.4 118 340-482 3-126 (128)
245 KOG0478 DNA replication licens 98.4 2.4E-06 5.1E-11 99.9 13.2 163 307-487 430-622 (804)
246 COG1241 MCM2 Predicted ATPase 98.4 2.6E-06 5.7E-11 101.7 13.7 228 305-552 285-592 (682)
247 PF12775 AAA_7: P-loop contain 98.4 1.5E-06 3.3E-11 94.3 10.5 138 340-493 34-195 (272)
248 PF00493 MCM: MCM2/3/5 family 98.3 1.2E-07 2.7E-12 105.5 1.1 225 307-552 25-326 (331)
249 KOG0480 DNA replication licens 98.3 3.2E-06 6.9E-11 98.2 10.3 233 304-555 343-646 (764)
250 PRK05917 DNA polymerase III su 98.2 8.1E-06 1.8E-10 89.1 11.0 122 336-478 16-154 (290)
251 PF13401 AAA_22: AAA domain; P 98.2 4.8E-06 1E-10 79.0 8.0 72 339-410 4-99 (131)
252 COG3267 ExeA Type II secretory 98.2 6.7E-05 1.5E-09 79.7 16.4 190 341-546 53-267 (269)
253 PF03969 AFG1_ATPase: AFG1-lik 98.1 1.4E-05 3.1E-10 90.0 11.8 103 336-456 59-168 (362)
254 KOG0482 DNA replication licens 98.1 1.1E-05 2.5E-10 91.4 10.5 232 307-552 343-638 (721)
255 PRK05818 DNA polymerase III su 98.1 8.5E-05 1.8E-09 79.8 16.3 120 338-478 6-147 (261)
256 PRK07132 DNA polymerase III su 98.1 7E-05 1.5E-09 82.4 15.8 125 337-489 16-160 (299)
257 PLN03210 Resistant to P. syrin 98.1 8E-05 1.7E-09 95.9 18.9 181 301-517 179-389 (1153)
258 cd01120 RecA-like_NTPases RecA 98.1 1.8E-05 3.8E-10 76.9 9.3 110 342-457 2-138 (165)
259 PF00931 NB-ARC: NB-ARC domain 98.1 0.0001 2.2E-09 79.5 16.1 177 316-524 3-202 (287)
260 PF12774 AAA_6: Hydrolytic ATP 98.0 4.8E-05 1E-09 80.7 13.0 125 340-487 33-176 (231)
261 PRK07276 DNA polymerase III su 98.0 0.00014 3.1E-09 79.6 16.9 127 337-487 22-171 (290)
262 PF05729 NACHT: NACHT domain 98.0 0.00011 2.4E-09 71.9 13.9 142 341-493 2-165 (166)
263 TIGR02237 recomb_radB DNA repa 98.0 3.8E-05 8.2E-10 79.4 10.3 78 335-412 8-111 (209)
264 PF00910 RNA_helicase: RNA hel 98.0 1.9E-05 4E-10 73.7 7.1 23 342-364 1-23 (107)
265 KOG1051 Chaperone HSP104 and r 97.8 0.00013 2.9E-09 89.4 12.7 202 305-533 185-411 (898)
266 KOG1968 Replication factor C, 97.8 4.9E-05 1.1E-09 93.6 9.0 211 295-531 309-535 (871)
267 PHA00729 NTP-binding motif con 97.8 8.9E-05 1.9E-09 78.2 8.7 25 340-364 18-42 (226)
268 cd01124 KaiC KaiC is a circadi 97.7 0.0002 4.2E-09 72.3 10.8 32 342-373 2-36 (187)
269 TIGR01618 phage_P_loop phage n 97.7 8.2E-05 1.8E-09 78.4 7.7 111 338-453 11-142 (220)
270 TIGR02688 conserved hypothetic 97.7 0.0013 2.7E-08 75.2 17.4 76 312-410 193-272 (449)
271 COG4650 RtcR Sigma54-dependent 97.7 9.1E-05 2E-09 79.5 7.8 137 337-488 206-369 (531)
272 PF06480 FtsH_ext: FtsH Extrac 97.7 2.4E-05 5.2E-10 71.8 2.5 47 114-160 4-52 (110)
273 PRK00131 aroK shikimate kinase 97.6 0.00014 3.1E-09 72.2 8.1 39 338-378 3-41 (175)
274 KOG2228 Origin recognition com 97.6 0.00037 8.1E-09 76.5 11.2 160 307-491 25-219 (408)
275 KOG2170 ATPase of the AAA+ sup 97.6 0.00087 1.9E-08 72.8 13.8 123 307-455 83-224 (344)
276 PRK11823 DNA repair protein Ra 97.6 0.00039 8.4E-09 80.7 12.0 78 335-412 76-170 (446)
277 COG1485 Predicted ATPase [Gene 97.6 0.00037 8.1E-09 77.2 11.0 138 303-459 22-175 (367)
278 PRK08118 topology modulation p 97.6 0.0001 2.3E-09 74.3 6.0 32 341-372 3-34 (167)
279 PRK08533 flagellar accessory p 97.6 0.00073 1.6E-08 71.7 12.6 110 335-456 20-163 (230)
280 PF13207 AAA_17: AAA domain; P 97.6 5.8E-05 1.3E-09 70.8 3.8 30 342-371 2-31 (121)
281 PTZ00202 tuzin; Provisional 97.6 0.0089 1.9E-07 68.6 21.6 66 300-374 256-321 (550)
282 PRK09361 radB DNA repair and r 97.6 0.00032 7E-09 73.5 9.7 39 335-373 19-60 (225)
283 PRK15455 PrkA family serine pr 97.5 8.9E-05 1.9E-09 87.0 5.6 65 302-372 72-137 (644)
284 KOG0477 DNA replication licens 97.5 0.0002 4.3E-09 83.3 8.2 175 307-494 450-653 (854)
285 TIGR02858 spore_III_AA stage I 97.5 0.00025 5.3E-09 77.1 8.4 114 340-476 112-256 (270)
286 cd01121 Sms Sms (bacterial rad 97.5 0.0006 1.3E-08 77.3 11.8 78 335-412 78-172 (372)
287 PF07693 KAP_NTPase: KAP famil 97.5 0.0052 1.1E-07 67.7 18.9 117 398-531 172-321 (325)
288 PRK14722 flhF flagellar biosyn 97.5 0.00034 7.3E-09 79.2 8.7 111 338-464 136-267 (374)
289 cd01394 radB RadB. The archaea 97.5 0.00084 1.8E-08 70.0 11.1 39 335-373 15-56 (218)
290 cd03283 ABC_MutS-like MutS-lik 97.5 0.00056 1.2E-08 70.9 9.7 105 340-459 26-151 (199)
291 PF05707 Zot: Zonular occluden 97.4 0.00029 6.4E-09 72.5 7.4 124 342-479 3-147 (193)
292 COG1373 Predicted ATPase (AAA+ 97.4 0.0054 1.2E-07 70.4 17.8 123 341-485 39-161 (398)
293 COG1618 Predicted nucleotide k 97.4 0.0015 3.2E-08 65.3 11.3 26 338-363 4-29 (179)
294 PRK06762 hypothetical protein; 97.4 0.00054 1.2E-08 68.2 8.1 40 339-378 2-41 (166)
295 PF13671 AAA_33: AAA domain; P 97.4 0.00049 1.1E-08 66.3 7.5 35 342-378 2-36 (143)
296 TIGR02012 tigrfam_recA protein 97.4 0.00071 1.5E-08 75.1 9.6 79 335-413 51-148 (321)
297 PRK07261 topology modulation p 97.4 0.00027 5.9E-09 71.5 5.7 31 342-372 3-33 (171)
298 COG5271 MDN1 AAA ATPase contai 97.3 0.00058 1.3E-08 85.9 9.2 138 339-492 1543-1704(4600)
299 PF13191 AAA_16: AAA ATPase do 97.3 0.00014 3E-09 72.9 3.4 59 308-375 2-63 (185)
300 PRK06067 flagellar accessory p 97.3 0.0014 3.1E-08 69.2 11.1 39 335-373 21-62 (234)
301 PRK00771 signal recognition pa 97.3 0.0025 5.4E-08 73.8 13.5 194 337-552 93-332 (437)
302 PF14516 AAA_35: AAA-like doma 97.3 0.011 2.4E-07 66.1 18.2 171 340-528 32-243 (331)
303 KOG0481 DNA replication licens 97.3 0.0015 3.2E-08 74.9 11.0 168 307-488 332-524 (729)
304 PRK12723 flagellar biosynthesi 97.3 0.0029 6.3E-08 72.2 13.2 167 338-520 173-374 (388)
305 PF00437 T2SE: Type II/IV secr 97.2 0.00044 9.5E-09 74.6 6.2 100 300-409 98-208 (270)
306 KOG2543 Origin recognition com 97.2 0.0044 9.5E-08 69.3 13.9 160 306-490 6-192 (438)
307 cd00983 recA RecA is a bacter 97.2 0.0017 3.6E-08 72.4 10.6 79 335-413 51-148 (325)
308 PF13604 AAA_30: AAA domain; P 97.2 0.00074 1.6E-08 69.8 7.5 98 340-455 19-132 (196)
309 PRK04296 thymidine kinase; Pro 97.2 0.0019 4.1E-08 66.5 10.1 70 341-410 4-90 (190)
310 PRK04040 adenylate kinase; Pro 97.2 0.0042 9.1E-08 64.0 12.6 35 339-375 2-38 (188)
311 COG0703 AroK Shikimate kinase 97.2 0.00088 1.9E-08 67.8 7.0 32 340-371 3-34 (172)
312 cd01128 rho_factor Transcripti 97.2 0.0047 1E-07 66.5 13.0 115 339-454 16-165 (249)
313 PRK09376 rho transcription ter 97.2 0.0013 2.9E-08 74.5 9.1 111 342-453 172-317 (416)
314 PF01745 IPT: Isopentenyl tran 97.2 0.001 2.2E-08 69.3 7.5 150 341-512 3-159 (233)
315 PRK13947 shikimate kinase; Pro 97.2 0.00039 8.5E-09 69.4 4.3 31 341-371 3-33 (171)
316 cd00464 SK Shikimate kinase (S 97.1 0.00061 1.3E-08 66.5 5.6 38 341-380 1-38 (154)
317 PRK12339 2-phosphoglycerate ki 97.1 0.0057 1.2E-07 63.5 12.8 35 339-375 3-37 (197)
318 PF06309 Torsin: Torsin; Inte 97.1 0.0026 5.7E-08 61.3 9.4 52 306-363 25-77 (127)
319 KOG2383 Predicted ATPase [Gene 97.1 0.0041 8.8E-08 69.9 11.9 161 336-529 111-297 (467)
320 TIGR02782 TrbB_P P-type conjug 97.1 0.00046 1E-08 76.1 4.6 69 340-408 133-214 (299)
321 PRK03839 putative kinase; Prov 97.1 0.00042 9.1E-09 70.1 3.9 31 341-371 2-32 (180)
322 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.0018 3.9E-08 68.0 8.8 40 335-374 15-63 (235)
323 PF06745 KaiC: KaiC; InterPro 97.1 0.0035 7.6E-08 65.7 10.8 39 335-373 15-57 (226)
324 PRK13948 shikimate kinase; Pro 97.1 0.00085 1.8E-08 68.8 6.0 43 337-381 8-50 (182)
325 TIGR00416 sms DNA repair prote 97.1 0.0043 9.4E-08 72.3 12.4 78 335-412 90-184 (454)
326 cd01131 PilT Pilus retraction 97.1 0.00083 1.8E-08 69.5 5.7 67 341-407 3-83 (198)
327 PRK00625 shikimate kinase; Pro 97.0 0.00054 1.2E-08 69.7 4.2 31 341-371 2-32 (173)
328 COG4619 ABC-type uncharacteriz 97.0 0.0038 8.2E-08 62.9 9.9 26 337-362 27-52 (223)
329 PF05272 VirE: Virulence-assoc 97.0 0.0028 6E-08 65.9 9.4 112 335-477 48-169 (198)
330 PRK13949 shikimate kinase; Pro 97.0 0.00088 1.9E-08 67.7 5.5 31 341-371 3-33 (169)
331 cd01393 recA_like RecA is a b 97.0 0.0026 5.7E-08 66.4 9.2 116 335-453 15-166 (226)
332 COG5245 DYN1 Dynein, heavy cha 97.0 0.0045 9.8E-08 77.9 12.1 177 338-528 1493-1712(3164)
333 cd01122 GP4d_helicase GP4d_hel 97.0 0.0034 7.3E-08 67.6 10.2 38 335-372 26-67 (271)
334 cd00046 DEXDc DEAD-like helica 97.0 0.0025 5.3E-08 59.2 7.9 24 340-363 1-24 (144)
335 cd00227 CPT Chloramphenicol (C 97.0 0.00072 1.6E-08 68.3 4.5 38 340-377 3-40 (175)
336 TIGR03877 thermo_KaiC_1 KaiC d 97.0 0.0067 1.5E-07 64.5 12.0 39 335-373 17-58 (237)
337 PRK04841 transcriptional regul 97.0 0.015 3.3E-07 72.9 17.1 150 340-516 33-218 (903)
338 cd01130 VirB11-like_ATPase Typ 97.0 0.00096 2.1E-08 68.2 5.3 70 339-408 25-110 (186)
339 TIGR03880 KaiC_arch_3 KaiC dom 97.0 0.007 1.5E-07 63.5 12.0 39 335-373 12-53 (224)
340 PRK13946 shikimate kinase; Pro 97.0 0.0019 4.2E-08 65.9 7.5 34 338-371 9-42 (184)
341 KOG3347 Predicted nucleotide k 97.0 0.00058 1.3E-08 67.2 3.3 32 340-371 8-39 (176)
342 PRK10536 hypothetical protein; 97.0 0.0036 7.8E-08 67.4 9.6 47 302-362 51-97 (262)
343 cd00984 DnaB_C DnaB helicase C 97.0 0.0044 9.6E-08 65.4 10.3 38 335-372 9-50 (242)
344 cd03216 ABC_Carb_Monos_I This 96.9 0.0022 4.7E-08 64.2 7.4 106 336-457 23-143 (163)
345 TIGR01359 UMP_CMP_kin_fam UMP- 96.9 0.00071 1.5E-08 68.3 4.0 34 342-377 2-35 (183)
346 COG3854 SpoIIIAA ncharacterize 96.9 0.0048 1E-07 64.9 9.9 71 340-410 138-230 (308)
347 PHA02624 large T antigen; Prov 96.9 0.0019 4.1E-08 76.4 7.8 124 335-477 427-561 (647)
348 TIGR01420 pilT_fam pilus retra 96.9 0.0018 3.8E-08 72.8 7.4 69 340-408 123-205 (343)
349 PF03266 NTPase_1: NTPase; In 96.9 0.0014 3.1E-08 66.3 6.0 27 341-367 1-30 (168)
350 cd03281 ABC_MSH5_euk MutS5 hom 96.9 0.0069 1.5E-07 63.5 11.2 23 339-361 29-51 (213)
351 PRK14532 adenylate kinase; Pro 96.9 0.00082 1.8E-08 68.4 4.1 36 341-378 2-37 (188)
352 cd02020 CMPK Cytidine monophos 96.9 0.00083 1.8E-08 64.8 3.9 30 342-371 2-31 (147)
353 PRK14974 cell division protein 96.9 0.0078 1.7E-07 67.5 12.0 73 338-410 139-234 (336)
354 PF10236 DAP3: Mitochondrial r 96.9 0.06 1.3E-06 59.8 18.7 134 387-523 142-308 (309)
355 PTZ00088 adenylate kinase 1; P 96.9 0.0011 2.4E-08 70.4 4.8 35 337-371 4-38 (229)
356 PRK06217 hypothetical protein; 96.9 0.00094 2E-08 68.0 4.1 31 341-371 3-33 (183)
357 cd02027 APSK Adenosine 5'-phos 96.9 0.0037 8.1E-08 61.7 8.2 36 342-377 2-40 (149)
358 PLN02200 adenylate kinase fami 96.8 0.0012 2.6E-08 70.3 4.7 41 335-377 39-79 (234)
359 PF05970 PIF1: PIF1-like helic 96.8 0.0056 1.2E-07 69.4 10.4 120 312-454 4-149 (364)
360 PRK14531 adenylate kinase; Pro 96.8 0.0012 2.5E-08 67.4 4.5 31 340-370 3-33 (183)
361 PRK06696 uridine kinase; Valid 96.8 0.0021 4.6E-08 67.6 6.4 39 338-376 21-62 (223)
362 cd01428 ADK Adenylate kinase ( 96.8 0.0011 2.3E-08 67.4 4.0 34 342-377 2-35 (194)
363 PRK10867 signal recognition pa 96.8 0.021 4.6E-07 66.1 14.9 75 336-410 97-195 (433)
364 TIGR03574 selen_PSTK L-seryl-t 96.8 0.0038 8.2E-08 66.7 8.2 36 342-377 2-40 (249)
365 PRK14700 recombination factor 96.8 0.0079 1.7E-07 65.9 10.4 114 444-564 6-127 (300)
366 PRK05800 cobU adenosylcobinami 96.8 0.0083 1.8E-07 60.8 10.0 72 341-413 3-91 (170)
367 cd02021 GntK Gluconate kinase 96.8 0.0012 2.6E-08 64.5 3.8 32 342-375 2-33 (150)
368 PRK12724 flagellar biosynthesi 96.7 0.02 4.3E-07 65.8 14.0 116 338-464 222-354 (432)
369 PRK13695 putative NTPase; Prov 96.7 0.011 2.5E-07 59.5 10.8 23 341-363 2-24 (174)
370 PRK13900 type IV secretion sys 96.7 0.0029 6.4E-08 70.8 7.1 70 339-408 160-245 (332)
371 PRK08154 anaerobic benzoate ca 96.7 0.0038 8.2E-08 69.2 7.8 36 336-371 130-165 (309)
372 PRK14530 adenylate kinase; Pro 96.7 0.0014 3.1E-08 68.4 4.2 30 341-370 5-34 (215)
373 TIGR01313 therm_gnt_kin carboh 96.7 0.0012 2.6E-08 65.5 3.4 32 342-375 1-32 (163)
374 cd00267 ABC_ATPase ABC (ATP-bi 96.7 0.0047 1E-07 61.1 7.4 103 338-457 24-141 (157)
375 PF00448 SRP54: SRP54-type pro 96.7 0.012 2.6E-07 61.1 10.7 132 339-485 1-157 (196)
376 COG1116 TauB ABC-type nitrate/ 96.7 0.008 1.7E-07 64.1 9.5 24 340-363 30-53 (248)
377 PRK06581 DNA polymerase III su 96.7 0.057 1.2E-06 57.8 15.7 134 339-493 15-163 (263)
378 PRK06547 hypothetical protein; 96.7 0.0017 3.7E-08 65.9 4.3 34 338-371 14-47 (172)
379 PRK03731 aroL shikimate kinase 96.7 0.0017 3.8E-08 64.9 4.3 32 340-371 3-34 (171)
380 COG1102 Cmk Cytidylate kinase 96.7 0.0014 3E-08 65.5 3.5 28 342-369 3-30 (179)
381 PRK05057 aroK shikimate kinase 96.7 0.0018 3.9E-08 65.5 4.4 34 339-372 4-37 (172)
382 cd03238 ABC_UvrA The excision 96.7 0.023 5.1E-07 57.9 12.5 117 337-477 19-163 (176)
383 cd00544 CobU Adenosylcobinamid 96.7 0.013 2.9E-07 59.3 10.7 71 342-414 2-89 (169)
384 PRK13833 conjugal transfer pro 96.7 0.0024 5.3E-08 71.1 5.8 70 339-408 144-225 (323)
385 PRK05973 replicative DNA helic 96.6 0.018 3.9E-07 61.6 11.9 39 335-373 60-101 (237)
386 smart00487 DEXDc DEAD-like hel 96.6 0.016 3.5E-07 57.2 10.9 33 340-372 25-62 (201)
387 TIGR01526 nadR_NMN_Atrans nico 96.6 0.0051 1.1E-07 68.7 8.0 69 340-410 163-243 (325)
388 PF12780 AAA_8: P-loop contain 96.6 0.01 2.3E-07 64.5 10.1 91 306-408 8-99 (268)
389 PF04665 Pox_A32: Poxvirus A32 96.6 0.037 8E-07 59.3 14.0 131 338-489 12-168 (241)
390 PRK09354 recA recombinase A; P 96.6 0.0075 1.6E-07 67.8 9.2 78 335-412 56-152 (349)
391 PRK13764 ATPase; Provisional 96.6 0.0025 5.3E-08 76.2 5.7 70 339-409 257-335 (602)
392 PRK13894 conjugal transfer ATP 96.6 0.003 6.6E-08 70.3 5.8 70 339-408 148-229 (319)
393 PRK04301 radA DNA repair and r 96.6 0.011 2.3E-07 65.7 10.1 40 335-374 98-146 (317)
394 PF08298 AAA_PrkA: PrkA AAA do 96.6 0.0045 9.7E-08 69.2 7.0 86 303-394 57-144 (358)
395 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.6 0.011 2.3E-07 58.1 9.0 100 337-457 24-128 (144)
396 PHA02530 pseT polynucleotide k 96.6 0.0058 1.3E-07 66.8 7.8 39 339-378 2-40 (300)
397 PRK14528 adenylate kinase; Pro 96.5 0.0023 5E-08 65.6 4.2 30 341-370 3-32 (186)
398 TIGR01360 aden_kin_iso1 adenyl 96.5 0.0022 4.7E-08 64.7 4.0 34 341-376 5-38 (188)
399 TIGR03878 thermo_KaiC_2 KaiC d 96.5 0.02 4.4E-07 61.8 11.7 38 335-372 32-72 (259)
400 PRK14737 gmk guanylate kinase; 96.5 0.0033 7.2E-08 64.6 5.3 26 338-363 3-28 (186)
401 TIGR02236 recomb_radA DNA repa 96.5 0.012 2.6E-07 65.0 10.0 40 335-374 91-139 (310)
402 PRK05541 adenylylsulfate kinas 96.5 0.0069 1.5E-07 61.0 7.4 40 338-377 6-48 (176)
403 COG4178 ABC-type uncharacteriz 96.5 0.011 2.5E-07 70.2 10.2 52 389-457 524-575 (604)
404 COG5271 MDN1 AAA ATPase contai 96.5 0.011 2.3E-07 75.3 10.0 136 340-491 889-1047(4600)
405 PRK14527 adenylate kinase; Pro 96.5 0.0025 5.3E-08 65.3 4.1 33 338-370 5-37 (191)
406 cd03228 ABCC_MRP_Like The MRP 96.5 0.0085 1.9E-07 60.2 7.9 105 337-459 26-158 (171)
407 PRK02496 adk adenylate kinase; 96.5 0.0023 4.9E-08 65.0 3.8 30 341-370 3-32 (184)
408 KOG0479 DNA replication licens 96.5 0.017 3.7E-07 67.5 11.0 150 307-475 302-481 (818)
409 PRK13851 type IV secretion sys 96.5 0.0029 6.3E-08 71.1 4.9 71 338-408 161-246 (344)
410 smart00534 MUTSac ATPase domai 96.5 0.016 3.6E-07 59.2 10.0 19 342-360 2-20 (185)
411 PRK11889 flhF flagellar biosyn 96.5 0.027 5.9E-07 64.2 12.5 72 338-409 240-331 (436)
412 TIGR02788 VirB11 P-type DNA tr 96.5 0.0038 8.2E-08 69.1 5.6 72 337-408 142-228 (308)
413 TIGR00959 ffh signal recogniti 96.5 0.046 9.9E-07 63.3 14.6 73 337-409 97-193 (428)
414 PRK04328 hypothetical protein; 96.4 0.029 6.2E-07 60.3 12.1 38 335-372 19-59 (249)
415 TIGR03499 FlhF flagellar biosy 96.4 0.0085 1.8E-07 65.6 8.1 38 338-375 193-235 (282)
416 TIGR01351 adk adenylate kinase 96.4 0.0026 5.6E-08 66.2 3.9 33 342-376 2-34 (210)
417 cd03280 ABC_MutS2 MutS2 homolo 96.4 0.026 5.7E-07 58.3 11.2 21 340-360 29-49 (200)
418 cd03227 ABC_Class2 ABC-type Cl 96.4 0.014 3.1E-07 58.3 8.8 22 339-360 21-42 (162)
419 cd03247 ABCC_cytochrome_bd The 96.4 0.03 6.4E-07 56.6 11.1 105 336-457 25-158 (178)
420 PRK09519 recA DNA recombinatio 96.4 0.015 3.3E-07 71.4 10.5 78 335-412 56-152 (790)
421 cd03222 ABC_RNaseL_inhibitor T 96.4 0.016 3.5E-07 59.2 9.1 87 339-437 25-117 (177)
422 cd03243 ABC_MutS_homologs The 96.4 0.014 2.9E-07 60.5 8.7 22 340-361 30-51 (202)
423 PRK00279 adk adenylate kinase; 96.4 0.0032 6.9E-08 65.8 4.1 29 342-370 3-31 (215)
424 TIGR02655 circ_KaiC circadian 96.4 0.025 5.4E-07 66.6 11.9 39 335-373 17-59 (484)
425 TIGR02525 plasmid_TraJ plasmid 96.4 0.0053 1.1E-07 69.7 6.1 69 341-409 151-236 (372)
426 TIGR02238 recomb_DMC1 meiotic 96.4 0.013 2.8E-07 65.2 9.0 115 335-452 92-242 (313)
427 cd01129 PulE-GspE PulE/GspE Th 96.3 0.0089 1.9E-07 64.8 7.6 95 302-409 56-160 (264)
428 COG0563 Adk Adenylate kinase a 96.3 0.0034 7.4E-08 64.2 4.1 32 341-374 2-33 (178)
429 cd03246 ABCC_Protease_Secretio 96.3 0.01 2.2E-07 59.8 7.5 102 339-457 28-157 (173)
430 PF13238 AAA_18: AAA domain; P 96.3 0.0028 6E-08 59.4 3.2 22 342-363 1-22 (129)
431 PRK14730 coaE dephospho-CoA ki 96.3 0.022 4.8E-07 59.0 10.1 36 341-378 3-38 (195)
432 PRK08099 bifunctional DNA-bind 96.3 0.0083 1.8E-07 68.8 7.6 39 339-377 219-257 (399)
433 PTZ00035 Rad51 protein; Provis 96.3 0.019 4.1E-07 64.5 10.2 115 335-452 114-264 (337)
434 PRK00889 adenylylsulfate kinas 96.3 0.015 3.3E-07 58.5 8.5 38 339-376 4-44 (175)
435 COG1936 Predicted nucleotide k 96.3 0.003 6.5E-08 63.8 3.2 30 341-371 2-31 (180)
436 PHA02774 E1; Provisional 96.3 0.0061 1.3E-07 72.0 6.2 32 340-371 435-467 (613)
437 PF06414 Zeta_toxin: Zeta toxi 96.3 0.011 2.3E-07 61.2 7.4 42 337-378 13-55 (199)
438 PLN03187 meiotic recombination 96.3 0.016 3.5E-07 65.1 9.3 115 335-452 122-272 (344)
439 PRK04182 cytidylate kinase; Pr 96.3 0.0038 8.3E-08 62.4 3.9 29 341-369 2-30 (180)
440 PF09848 DUF2075: Uncharacteri 96.3 0.0093 2E-07 67.2 7.4 23 341-363 3-25 (352)
441 PRK01184 hypothetical protein; 96.2 0.0038 8.2E-08 63.3 3.8 33 341-376 3-35 (184)
442 PLN02674 adenylate kinase 96.2 0.0052 1.1E-07 65.9 4.9 39 337-377 29-67 (244)
443 TIGR01448 recD_rel helicase, p 96.2 0.013 2.8E-07 72.2 8.9 98 341-457 340-456 (720)
444 cd03115 SRP The signal recogni 96.2 0.026 5.7E-07 56.6 9.7 33 342-374 3-38 (173)
445 PF13245 AAA_19: Part of AAA d 96.2 0.0064 1.4E-07 53.5 4.5 33 341-373 12-51 (76)
446 PRK10416 signal recognition pa 96.2 0.046 1E-06 60.9 12.4 37 337-373 112-151 (318)
447 cd01125 repA Hexameric Replica 96.2 0.036 7.8E-07 58.9 11.1 21 342-362 4-24 (239)
448 cd00561 CobA_CobO_BtuR ATP:cor 96.2 0.055 1.2E-06 54.4 11.6 114 342-475 5-152 (159)
449 COG4088 Predicted nucleotide k 96.2 0.023 5E-07 59.1 9.0 22 342-363 4-25 (261)
450 cd03232 ABC_PDR_domain2 The pl 96.2 0.054 1.2E-06 55.6 11.8 25 338-362 32-56 (192)
451 PF00406 ADK: Adenylate kinase 96.2 0.0036 7.7E-08 61.5 3.0 34 344-379 1-34 (151)
452 cd03223 ABCD_peroxisomal_ALDP 96.2 0.025 5.5E-07 56.7 9.2 102 337-457 25-149 (166)
453 cd03230 ABC_DR_subfamily_A Thi 96.2 0.025 5.4E-07 57.0 9.2 103 339-457 26-156 (173)
454 PF13521 AAA_28: AAA domain; P 96.2 0.0048 1E-07 61.4 4.0 34 342-376 2-35 (163)
455 PRK09302 circadian clock prote 96.2 0.039 8.4E-07 65.3 12.2 112 335-457 27-178 (509)
456 TIGR00064 ftsY signal recognit 96.2 0.044 9.6E-07 59.7 11.7 38 336-373 69-109 (272)
457 TIGR02533 type_II_gspE general 96.1 0.012 2.5E-07 69.3 7.7 95 301-409 217-322 (486)
458 cd03214 ABC_Iron-Siderophores_ 96.1 0.024 5.2E-07 57.5 9.0 27 337-363 23-49 (180)
459 cd03213 ABCG_EPDR ABCG transpo 96.1 0.031 6.7E-07 57.5 9.9 27 337-363 33-59 (194)
460 PRK05703 flhF flagellar biosyn 96.1 0.07 1.5E-06 61.8 13.8 110 339-463 221-351 (424)
461 COG1136 SalX ABC-type antimicr 96.1 0.063 1.4E-06 56.9 12.3 64 391-476 153-216 (226)
462 TIGR02173 cyt_kin_arch cytidyl 96.1 0.005 1.1E-07 61.1 3.9 28 342-369 3-30 (171)
463 cd02019 NK Nucleoside/nucleoti 96.1 0.0078 1.7E-07 51.6 4.5 30 342-371 2-32 (69)
464 TIGR02239 recomb_RAD51 DNA rep 96.1 0.023 4.9E-07 63.3 9.2 115 335-452 92-242 (316)
465 cd01878 HflX HflX subfamily. 96.0 0.089 1.9E-06 53.9 12.9 23 340-362 42-64 (204)
466 PF13481 AAA_25: AAA domain; P 96.0 0.025 5.4E-07 57.4 8.5 73 341-413 34-156 (193)
467 PRK08233 hypothetical protein; 96.0 0.0073 1.6E-07 60.6 4.5 33 340-372 4-37 (182)
468 COG1121 ZnuC ABC-type Mn/Zn tr 96.0 0.043 9.3E-07 59.1 10.4 66 388-475 147-212 (254)
469 PF08433 KTI12: Chromatin asso 96.0 0.021 4.5E-07 62.3 8.2 68 342-410 4-82 (270)
470 TIGR00767 rho transcription te 96.0 0.021 4.6E-07 65.1 8.5 25 340-364 169-193 (415)
471 PRK04220 2-phosphoglycerate ki 96.0 0.02 4.3E-07 63.1 8.0 39 337-376 90-128 (301)
472 COG2274 SunT ABC-type bacterio 96.0 0.029 6.2E-07 68.8 10.2 66 388-477 617-682 (709)
473 PF00625 Guanylate_kin: Guanyl 96.0 0.011 2.4E-07 60.1 5.7 25 339-363 2-26 (183)
474 PRK14526 adenylate kinase; Pro 96.0 0.0064 1.4E-07 63.8 4.0 34 341-376 2-35 (211)
475 TIGR02768 TraA_Ti Ti-type conj 96.0 0.02 4.4E-07 70.7 8.9 71 340-410 369-451 (744)
476 TIGR03881 KaiC_arch_4 KaiC dom 96.0 0.015 3.2E-07 61.1 6.7 40 335-374 16-58 (229)
477 PLN03186 DNA repair protein RA 95.9 0.025 5.5E-07 63.6 8.8 116 335-453 119-270 (342)
478 TIGR02655 circ_KaiC circadian 95.9 0.023 4.9E-07 66.9 8.8 77 335-411 259-366 (484)
479 COG1120 FepC ABC-type cobalami 95.9 0.037 8E-07 59.8 9.6 25 339-363 28-52 (258)
480 PF01583 APS_kinase: Adenylyls 95.9 0.0096 2.1E-07 59.6 4.7 38 339-376 2-42 (156)
481 TIGR03819 heli_sec_ATPase heli 95.9 0.0091 2E-07 67.1 5.1 70 339-408 178-263 (340)
482 cd03287 ABC_MSH3_euk MutS3 hom 95.9 0.037 7.9E-07 58.6 9.3 105 339-459 31-157 (222)
483 PF13086 AAA_11: AAA domain; P 95.9 0.0059 1.3E-07 62.9 3.2 22 342-363 20-41 (236)
484 cd03282 ABC_MSH4_euk MutS4 hom 95.9 0.071 1.5E-06 55.7 11.2 22 340-361 30-51 (204)
485 KOG3928 Mitochondrial ribosome 95.8 0.19 4.2E-06 57.1 15.0 53 472-525 405-457 (461)
486 PLN02459 probable adenylate ki 95.8 0.0095 2.1E-07 64.4 4.7 35 340-376 30-64 (261)
487 PF02562 PhoH: PhoH-like prote 95.8 0.019 4.1E-07 60.0 6.8 23 341-363 21-43 (205)
488 TIGR00150 HI0065_YjeE ATPase, 95.8 0.0097 2.1E-07 58.1 4.3 28 339-366 22-49 (133)
489 PRK05480 uridine/cytidine kina 95.8 0.011 2.4E-07 61.3 4.8 38 338-375 5-43 (209)
490 TIGR01425 SRP54_euk signal rec 95.8 0.067 1.5E-06 61.8 11.5 39 337-375 98-139 (429)
491 TIGR00455 apsK adenylylsulfate 95.8 0.043 9.3E-07 55.7 8.9 40 338-377 17-59 (184)
492 smart00072 GuKc Guanylate kina 95.8 0.015 3.3E-07 59.3 5.6 25 339-363 2-26 (184)
493 PF13479 AAA_24: AAA domain 95.7 0.017 3.7E-07 60.5 6.1 68 339-410 3-80 (213)
494 COG2804 PulE Type II secretory 95.7 0.02 4.4E-07 66.5 7.1 97 300-410 232-339 (500)
495 PRK10078 ribose 1,5-bisphospho 95.7 0.0093 2E-07 60.9 4.0 29 340-368 3-31 (186)
496 PF08303 tRNA_lig_kinase: tRNA 95.7 0.11 2.5E-06 52.3 11.4 133 345-494 5-146 (168)
497 COG2074 2-phosphoglycerate kin 95.7 0.33 7.2E-06 52.1 15.4 184 336-552 86-281 (299)
498 COG2874 FlaH Predicted ATPases 95.7 0.098 2.1E-06 54.9 11.3 125 327-465 14-176 (235)
499 COG2884 FtsE Predicted ATPase 95.7 0.1 2.2E-06 53.9 11.1 22 342-363 31-52 (223)
500 PRK12608 transcription termina 95.7 0.07 1.5E-06 60.6 11.0 23 341-363 135-157 (380)
No 1
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-106 Score=927.68 Aligned_cols=572 Identities=39% Similarity=0.535 Sum_probs=504.8
Q ss_pred HHHHHHHHHHHHhcccccCCCCCccccHHHHHHHHHcCCccEEEEEeCCcEEEEEcceecCCcccCCCCCCCCccceeEE
Q 043051 113 EWSRVLMTMCGRLKGTELDPENSHRIDFSDFWKLLNSNSVQYMEYSNYGQTVSVILPYYKDAKVEGKEGNPGKDIIYRRH 192 (845)
Q Consensus 113 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (845)
+|..+++++...+..+. ......++|++|..++..++|++|.+...+..+. .+++++. .+..|
T Consensus 2 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~v~---~~~~~~~------------~~~~~ 64 (596)
T COG0465 2 LWLLIAIVLIFLFNLFT--NSSSKQVTYSQFIQLVSGGKVSSVSIKGDSKTVN---LKLKDGS------------KNTVY 64 (596)
T ss_pred chhHHHHHHHHHHHHhh--hcccccccHHHHHHHHhcCCceEEEEcCCceEEE---EEecCCc------------ceEEe
Confidence 46665555554443333 4445789999999999999999999994333455 4555441 11122
Q ss_pred EEecCCCCChhhHHHHHHhCCCeEEEeccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCCC
Q 043051 193 VVDRMPIDCWNDVWQKLHQQVVNVDVVNVNTVSAEVYSSVATAVIWSMRLALAVGLYIWIDNIMRPIYAKLIPCDLGTPP 272 (845)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 272 (845)
+ |....+..+...+..+++.+....+ ...++|..++++++|+++++++++|+++++... |
T Consensus 65 -~--~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~lp~il~~~~~~~~~~r~~~~---------g--- 124 (596)
T COG0465 65 -L--PKGVNDPNLVSFLDSNNITESGFIP-----EDNSLLASLLSTWLPFILLIGLGWFFFRRQAQG---------G--- 124 (596)
T ss_pred -e--cCCcccHHHHHHHHhcCCcccccCC-----CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------C---
Confidence 2 2212246789999999987655544 344578888899999999999776666554310 1
Q ss_pred CcccchhhhhhhhccccccccccccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChH
Q 043051 273 QKTRQPLQRRALGSLGKSRAKFISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGK 352 (845)
Q Consensus 273 ~~~~~~~~~~~~~~~~~s~a~~~~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGK 352 (845)
++.+.|+ +++|+++.+... ..+++|.||+|++++|++|.++|+||++|.+|..+|+++|+|+||+|||||||
T Consensus 125 ------~g~~~~~-~gkskak~~~~~-~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGK 196 (596)
T COG0465 125 ------GGGGAFS-FGKSKAKLYLED-QVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGK 196 (596)
T ss_pred ------CCCcccC-CChHHHHHhccc-ccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCc
Confidence 1112555 999999998876 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEeechhHHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHH
Q 043051 353 TLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQ 432 (845)
Q Consensus 353 T~LArALA~elg~pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~q 432 (845)
|+||||+|+|+++||+++|+|+|+++|+|++++++|++|.+|++++||||||||||+++++|+ .+.++++++++++|+|
T Consensus 197 TLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg-~g~GggnderEQTLNQ 275 (596)
T COG0465 197 TLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRG-AGLGGGNDEREQTLNQ 275 (596)
T ss_pred HHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccC-CCCCCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998 4488999999999999
Q ss_pred HHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHH
Q 043051 433 ILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAEL 512 (845)
Q Consensus 433 LL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~ 512 (845)
+|.+||||..+.+ |+||++||+|+.|||||+||||||++|.++.||..+|++|++.|++++++. .++++..+|+.
T Consensus 276 lLvEmDGF~~~~g-viviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~----~~Vdl~~iAr~ 350 (596)
T COG0465 276 LLVEMDGFGGNEG-VIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA----EDVDLKKIARG 350 (596)
T ss_pred HHhhhccCCCCCc-eEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC----CcCCHHHHhhh
Confidence 9999999996655 999999999999999999999999999999999999999999999999988 78899999999
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcccccccCCCC-CCCchhHHHHHHHHHHHHHHHHHhhCCCC
Q 043051 513 TEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQKGTFETGQED-STDIPEELKLRLAYREAAVAVLACHLPDP 591 (845)
Q Consensus 513 t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~k~~~~~g~e~-~~~ls~~ek~~iA~hEaGhAlv~~~l~~~ 591 (845)
|+||+|+|+.|++|+|+++|+++++..|++.||.+|++++ .+|+++ +..+++.+++.+||||+|||+++++++++
T Consensus 351 tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv----~~G~erks~vise~ek~~~AYhEaghalv~~~l~~~ 426 (596)
T COG0465 351 TPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRV----IAGPERKSRVISEAEKKITAYHEAGHALVGLLLPDA 426 (596)
T ss_pred CCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHH----hcCcCcCCcccChhhhcchHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999 999999 66799999999999999999999999999
Q ss_pred CCCceeeeecccccCC---CCc---cccccccccCCHHHHHHHHHHhhchhHHHHHhhCCccccccccchHHHHHHHHHH
Q 043051 592 YRPIIETDIKSIRSQP---NMR---YAEISGRVFSRKNDYLNAIVRACAPRVIEEQMFGIDNMCWISSKATLDASRLAEF 665 (845)
Q Consensus 592 ~~p~~kvtI~~i~~~p---alg---~~p~~d~~~~tk~~l~~~I~v~LgGRaAEelvfG~~~vttGAs~Dl~~AT~lA~~ 665 (845)
+ |++|+|| +| ++| ++|++|++++||++++++|+++||||||||++||. ++||||+||+++||++||.
T Consensus 427 d-~v~KvtI-----iPrG~alG~t~~~Pe~d~~l~sk~~l~~~i~~~lgGRaAEel~~g~-e~ttGa~~D~~~at~~ar~ 499 (596)
T COG0465 427 D-PVHKVTI-----IPRGRALGYTLFLPEEDKYLMSKEELLDRIDVLLGGRAAEELIFGY-EITTGASNDLEKATDLARA 499 (596)
T ss_pred c-ccceeee-----ccCchhhcchhcCCccccccccHHHHHHHHHHHhCCcHhhhhhhcc-cccccchhhHHHHHHHHHH
Confidence 9 9999999 88 567 78999999999999999999999999999999996 6699999999999999999
Q ss_pred HHHHhccCC-ccccccccCCCccc-------cchHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHhccc
Q 043051 666 LILQTGMTA-FGKAYYRNQSDLVP-------NLATKLEALRDEYMRFAVE----KCASVLREYHSAVETITDILLEKGEI 733 (845)
Q Consensus 666 mV~~~GMs~-~G~~~~~~~~~~~~-------~~s~~~~~~iD~ev~~l~~----~a~~lL~~~r~~Le~LA~~LLekEtL 733 (845)
||++||||+ +|++.|...+++|+ ++|++|++.||.||+++++ +|++||.+|++.++.+++.|+|+|||
T Consensus 500 mVt~~Gms~~lG~v~~~~~~~~flg~~~~~~~~Se~ta~~ID~evk~ii~~~y~~a~~il~~~~~~l~~~~~~Lle~Eti 579 (596)
T COG0465 500 MVTEYGMSAKLGPVAYEQVEGVFLGRYQKAKNYSEETAQEIDREVKDIIDEAYERAKELLNENKDALETLAEMLLEKETI 579 (596)
T ss_pred hhhhcCcchhhCceehhhcccccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcc
Confidence 999999999 99999954444666 3999999999999999997 99999999999999999999999999
Q ss_pred CHHHHHHHHhcCC
Q 043051 734 KAEEIWDIYKKAP 746 (845)
Q Consensus 734 ~~~ei~~il~~~~ 746 (845)
++++|..|+....
T Consensus 580 ~~~~i~~i~~~~~ 592 (596)
T COG0465 580 DAEEIKDILAGRK 592 (596)
T ss_pred CHHHHHHHHhccc
Confidence 9999999997654
No 2
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-101 Score=850.91 Aligned_cols=431 Identities=39% Similarity=0.556 Sum_probs=408.5
Q ss_pred cccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechh
Q 043051 295 ISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTD 374 (845)
Q Consensus 295 ~~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sd 374 (845)
..++...+++|+||-|+|++|++|.|+|+||++|.+|.++|.+.|+||||+||||||||+||||+|+|+++|||+.+||+
T Consensus 293 v~p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSE 372 (752)
T KOG0734|consen 293 VDPEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSE 372 (752)
T ss_pred cChhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccc
Confidence 34455679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcC
Q 043051 375 FVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATN 454 (845)
Q Consensus 375 f~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN 454 (845)
|-++|+|+++.+||++|..|++.+||||||||||++|.+|...+ .....++|+|||.+||||..+.+ ||||+|||
T Consensus 373 FdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~----~~y~kqTlNQLLvEmDGF~qNeG-iIvigATN 447 (752)
T KOG0734|consen 373 FDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSD----QHYAKQTLNQLLVEMDGFKQNEG-IIVIGATN 447 (752)
T ss_pred hhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccH----HHHHHHHHHHHHHHhcCcCcCCc-eEEEeccC
Confidence 99999999999999999999999999999999999999986332 22678999999999999998887 99999999
Q ss_pred CCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Q 043051 455 RLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTAR 534 (845)
Q Consensus 455 ~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r 534 (845)
.|+.||+||.||||||++|.++.||..+|.+||+.|+.+..+. .++|+..||+.|+||+|+||+|++|.||+.|+.
T Consensus 448 fpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~----~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~ 523 (752)
T KOG0734|consen 448 FPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLD----EDVDPKIIARGTPGFSGADLANLVNQAALKAAV 523 (752)
T ss_pred ChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcc----cCCCHhHhccCCCCCchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998887 789999999999999999999999999999999
Q ss_pred cCCCccCHHHHHHHHHhcccccccCCCC-CCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCceeeeecccccCC---CCc
Q 043051 535 KDLDYIGQEELLEALKRQKGTFETGQED-STDIPEELKLRLAYREAAVAVLACHLPDPYRPIIETDIKSIRSQP---NMR 610 (845)
Q Consensus 535 ~~~~~It~edl~~Al~r~k~~~~~g~e~-~~~ls~~ek~~iA~hEaGhAlv~~~l~~~~~p~~kvtI~~i~~~p---alg 610 (845)
.+...|+|.+++.|-+|+ .+|+++ +..++++.++++||||+||||++.+..++. |++|+|| +| ++|
T Consensus 524 dga~~VtM~~LE~akDrI----lMG~ERks~~i~~eak~~TAyHE~GHAivA~yTk~A~-PlhKaTI-----mPRG~sLG 593 (752)
T KOG0734|consen 524 DGAEMVTMKHLEFAKDRI----LMGPERKSMVIDEEAKKITAYHEGGHAIVALYTKGAM-PLHKATI-----MPRGPSLG 593 (752)
T ss_pred cCcccccHHHHhhhhhhe----eecccccccccChhhhhhhhhhccCceEEEeecCCCc-cccceee-----ccCCcccc
Confidence 999999999999999999 999999 888999999999999999999999999998 9999999 77 788
Q ss_pred ---cccccccccCCHHHHHHHHHHhhchhHHHHHhhCCccccccccchHHHHHHHHHHHHHHhccCC-ccccccccCCCc
Q 043051 611 ---YAEISGRVFSRKNDYLNAIVRACAPRVIEEQMFGIDNMCWISSKATLDASRLAEFLILQTGMTA-FGKAYYRNQSDL 686 (845)
Q Consensus 611 ---~~p~~d~~~~tk~~l~~~I~v~LgGRaAEelvfG~~~vttGAs~Dl~~AT~lA~~mV~~~GMs~-~G~~~~~~~~~~ 686 (845)
++|+.|++..||.+|+++|.||||||+|||++||.+++||||++||++||++|++||+.||||+ +|++.+..+.+
T Consensus 594 ~t~~LPe~D~~~~Tk~q~LA~lDV~MGGRvAEELIfG~D~iTsGAssDl~qAT~lA~~MVt~fGMSd~vG~v~~~~~~~- 672 (752)
T KOG0734|consen 594 HTSQLPEKDRYSITKAQLLARLDVCMGGRVAEELIFGTDKITSGASSDLDQATKLARRMVTKFGMSDKVGPVTLSAEDN- 672 (752)
T ss_pred ceeecCccchhhHHHHHHHHHHHHhhcchHHHHHhccCCcccccccchHHHHHHHHHHHHHHcCccccccceeeeccCC-
Confidence 8999999999999999999999999999999999999999999999999999999999999999 99999854433
Q ss_pred cccchHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhcC
Q 043051 687 VPNLATKLEALRDEYMRFAVE----KCASVLREYHSAVETITDILLEKGEIKAEEIWDIYKKA 745 (845)
Q Consensus 687 ~~~~s~~~~~~iD~ev~~l~~----~a~~lL~~~r~~Le~LA~~LLekEtL~~~ei~~il~~~ 745 (845)
...++.+|+..||.||+++++ ||+.||+.|...+++||++||++|||+++||+.++.+.
T Consensus 673 ~~s~~~~t~~lidaEi~~lL~~sYeRak~iL~~h~kEl~~LA~ALleYETL~A~eik~vl~g~ 735 (752)
T KOG0734|consen 673 SSSLSPRTQELIDAEIKRLLRDSYERAKSILKTHKKELHALAEALLEYETLDAKEIKRVLKGK 735 (752)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhcc
Confidence 234788999999999999887 99999999999999999999999999999999999754
No 3
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-100 Score=885.27 Aligned_cols=573 Identities=40% Similarity=0.580 Sum_probs=476.1
Q ss_pred CccccHHHHHH-HHHcCCccEEEEEeCCcEEEEEcceecCCcccCCCCCCCCccceeEEEEecCCCCChhhHHHHHHhCC
Q 043051 135 SHRIDFSDFWK-LLNSNSVQYMEYSNYGQTVSVILPYYKDAKVEGKEGNPGKDIIYRRHVVDRMPIDCWNDVWQKLHQQV 213 (845)
Q Consensus 135 ~~~~~~~~f~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 213 (845)
.++++|++|+. +++.|.|.++.+.+.-..++|++ ..+... +.......|....+ .+.|.+.|....
T Consensus 163 ~~ei~~~df~~~~le~g~v~~~evv~~~~~~rv~~---~~~~~~------~~~~~~~~~~~i~~----v~~F~~kl~~a~ 229 (774)
T KOG0731|consen 163 WQEITWRDFKQKLLEKGEVGKLEVVNPYAVVRVEL---DRGRIP------GDRLIQKVWFNIRS----VDNFERKLDEAQ 229 (774)
T ss_pred ceeeeHHHHHHHHhhccceeeEEeeccceeEEEEE---eccccc------cccceeeEEEEecc----cchHHHHHHHHH
Confidence 46899999975 89999999999985222334322 222110 00011112222222 345666665544
Q ss_pred CeEEEeccccccc--cccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCCCCcccchhhhhhhhcccccc
Q 043051 214 VNVDVVNVNTVSA--EVYSSVATAVIWSMRLALAVGLYIWIDNIMRPIYAKLIPCDLGTPPQKTRQPLQRRALGSLGKSR 291 (845)
Q Consensus 214 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~s~ 291 (845)
..+.+...+.+|. .....+...+..++|++++++..++++|++.. ... +.| ....+.+.++ .+++.
T Consensus 230 ~~l~~~~~~~~pV~~~~~~~~~~~~~~~~pti~~~~~l~~l~r~~~~-~~~------~~~----gg~~g~~~f~-~~ks~ 297 (774)
T KOG0731|consen 230 RNLGIDTVVRVPVTYISESLLDLILGLLLPTILLLGGLLYLSRRSEG-MGK------GGP----GGGLGPRLFG-VSKSY 297 (774)
T ss_pred HHhCCCceeEeeeEEeecchhhhhhhhhhHHHHHHHhHheeeeeccc-ccc------cCC----ccccCcceee-eccce
Confidence 4432222222221 12234566677788977777777777777752 110 100 0001112222 33333
Q ss_pred ccccccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 043051 292 AKFISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAAN 371 (845)
Q Consensus 292 a~~~~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs 371 (845)
+.+..+..++++|+||+|++++|++|.|+|.||++|++|+++|+++|+|+||+||||||||+||||+|+|+|+||+.++
T Consensus 298 -~k~~~~~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svS 376 (774)
T KOG0731|consen 298 -KKFKNEGNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVS 376 (774)
T ss_pred -eeeccCCCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeec
Confidence 3344466788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEE
Q 043051 372 GTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIG 451 (845)
Q Consensus 372 ~sdf~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIa 451 (845)
+|+|+++++|.+++++|++|..|+.++||||||||||++++.|++...++++++++++|||||.+||||... ..|+|+|
T Consensus 377 GSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~-~~vi~~a 455 (774)
T KOG0731|consen 377 GSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS-KGVIVLA 455 (774)
T ss_pred hHHHHHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC-CcEEEEe
Confidence 999999999999999999999999999999999999999999964556788999999999999999999887 4499999
Q ss_pred EcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 043051 452 ATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGIL 531 (845)
Q Consensus 452 aTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~ 531 (845)
+||+++.||+||+||||||++|.+++|+..+|.+|+++|+++..+. ..+.++..+|.+|+||+|+||+|+||+|++.
T Consensus 456 ~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~---~e~~dl~~~a~~t~gf~gadl~n~~neaa~~ 532 (774)
T KOG0731|consen 456 ATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD---DEDVDLSKLASLTPGFSGADLANLCNEAALL 532 (774)
T ss_pred ccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC---cchhhHHHHHhcCCCCcHHHHHhhhhHHHHH
Confidence 9999999999999999999999999999999999999999998875 2577888899999999999999999999999
Q ss_pred HHHcCCCccCHHHHHHHHHhcccccccCCCC-CCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCceeeeecccccCC--C
Q 043051 532 TARKDLDYIGQEELLEALKRQKGTFETGQED-STDIPEELKLRLAYREAAVAVLACHLPDPYRPIIETDIKSIRSQP--N 608 (845)
Q Consensus 532 A~r~~~~~It~edl~~Al~r~k~~~~~g~e~-~~~ls~~ek~~iA~hEaGhAlv~~~l~~~~~p~~kvtI~~i~~~p--a 608 (845)
|++++...|+..||.+|++|+ ..|.++ ...++.++++.+||||||||+++|+|++.+ |+.|++| +| +
T Consensus 533 a~r~~~~~i~~~~~~~a~~Rv----i~G~~~~~~~~~~~~~~~~a~~eagha~~g~~l~~~d-pl~kvsI-----iPGqa 602 (774)
T KOG0731|consen 533 AARKGLREIGTKDLEYAIERV----IAGMEKKSRVLSLEEKKTVAYHEAGHAVVGWLLEHAD-PLLKVSI-----IPGQA 602 (774)
T ss_pred HHHhccCccchhhHHHHHHHH----hccccccchhcCHhhhhhhhhhhccchhhhccccccC-cceeEEe-----ccCCc
Confidence 999999999999999999999 899777 888999999999999999999999999998 9999999 88 7
Q ss_pred Cc---cccccccccCCHHHHHHHHHHhhchhHHHHHhhCCccccccccchHHHHHHHHHHHHHHhccCC-ccccccccCC
Q 043051 609 MR---YAEISGRVFSRKNDYLNAIVRACAPRVIEEQMFGIDNMCWISSKATLDASRLAEFLILQTGMTA-FGKAYYRNQS 684 (845)
Q Consensus 609 lg---~~p~~d~~~~tk~~l~~~I~v~LgGRaAEelvfG~~~vttGAs~Dl~~AT~lA~~mV~~~GMs~-~G~~~~~~~~ 684 (845)
+| |.|.++ +++++++|++||||+||||||||++|| .++||||++|+++||+|||+||++|||++ +|+++++...
T Consensus 603 lG~a~~~P~~~-~l~sk~ql~~rm~m~LGGRaAEev~fg-~~iTtga~ddl~kvT~~A~~~V~~~Gms~kig~~~~~~~~ 680 (774)
T KOG0731|consen 603 LGYAQYLPTDD-YLLSKEQLFDRMVMALGGRAAEEVVFG-SEITTGAQDDLEKVTKIARAMVASFGMSEKIGPISFQMLL 680 (774)
T ss_pred cceEEECCccc-ccccHHHHHHHHHHHhCcchhhheecC-CccCchhhccHHHHHHHHHHHHHHcCcccccCceeccCcc
Confidence 77 677755 999999999999999999999999999 67899999999999999999999999999 9999993322
Q ss_pred --C--ccccchHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhcCCCCC
Q 043051 685 --D--LVPNLATKLEALRDEYMRFAVE----KCASVLREYHSAVETITDILLEKGEIKAEEIWDIYKKAPQIP 749 (845)
Q Consensus 685 --~--~~~~~s~~~~~~iD~ev~~l~~----~a~~lL~~~r~~Le~LA~~LLekEtL~~~ei~~il~~~~~~~ 749 (845)
+ ....||..+++.||.|+++++. +|.++|++|++.|+.||+.|||||+|+++|+.++++.+|..+
T Consensus 681 ~~~~~~~~p~s~~~~~~Id~ev~~lv~~ay~~~~~ll~~n~~~l~~ia~~LLeke~l~~ee~~~ll~~~~~~~ 753 (774)
T KOG0731|consen 681 PGDESFRKPYSEKTAQLIDTEVRRLVQKAYERTKELLRTNRDKLDKIAEVLLEKEVLTGEEIIALLGERPPGM 753 (774)
T ss_pred cccccccCccchhHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccHHHHHHHhccCCCcc
Confidence 1 1234999999999999999987 899999999999999999999999999999999999877554
No 4
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=3.5e-91 Score=820.91 Aligned_cols=558 Identities=37% Similarity=0.557 Sum_probs=480.1
Q ss_pred ccccHHHHHHHHHcCCccEEEEEeCCcEEE-EEcceecCCcccCCCCCCCCccceeEEEEecCCCCChhhHHHHHHhCCC
Q 043051 136 HRIDFSDFWKLLNSNSVQYMEYSNYGQTVS-VILPYYKDAKVEGKEGNPGKDIIYRRHVVDRMPIDCWNDVWQKLHQQVV 214 (845)
Q Consensus 136 ~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 214 (845)
++++||+|++++++|+|++|.+.+ +.+. .+....++. +. .+..|.+..|. .++++.+.|.++++
T Consensus 50 ~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~---------~~--~~~~~~~~~~~--~~~~~~~~l~~~~~ 114 (638)
T CHL00176 50 SRMTYGRFLEYLDMGWIKKVDLYD--NGRTAIVEASSPEL---------GN--RPQRIRVELPV--GASELIQKLKEANI 114 (638)
T ss_pred ceecHHHHHHHHHcCCeeEEEEec--CceEEEEeeccccC---------CC--cceeEEEeCCC--CCHHHHHHHHHcCC
Confidence 469999999999999999999984 3332 111222211 01 12245565653 25789999999999
Q ss_pred eEEEeccccccccccchHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCCCCcccchhhhhhhhcccccccc
Q 043051 215 NVDVVNVNTVSAEVYSSVATAV-IWSMRLALAVGLYIWIDNIMRPIYAKLIPCDLGTPPQKTRQPLQRRALGSLGKSRAK 293 (845)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~s~a~ 293 (845)
++...+. ...++|..++ .+++|+++++++|+++.+++.. .+ +.++.+.++++++++
T Consensus 115 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~---------~~~~~~~~~~~~~~~ 171 (638)
T CHL00176 115 DFDAHPP-----VLKSNIVTILSNLLLPLILIGVLWFFFQRSSNF---------KG---------GPGQNLMNFGKSKAR 171 (638)
T ss_pred cEEecCC-----CccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------cC---------CCcccccccchhHHH
Confidence 9987654 3334555555 4467898888888776555420 01 011123358888877
Q ss_pred ccccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeech
Q 043051 294 FISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGT 373 (845)
Q Consensus 294 ~~~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~s 373 (845)
+.... ...++|+||+|.+++++++.+++.++++++.|..+|..+|+|+||+||||||||++|+++|+++++||+.++++
T Consensus 172 ~~~~~-~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s 250 (638)
T CHL00176 172 FQMEA-DTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGS 250 (638)
T ss_pred hhccc-CCCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHH
Confidence 66544 67899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEc
Q 043051 374 DFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGAT 453 (845)
Q Consensus 374 df~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaT 453 (845)
+|.++++|.+..+++.+|..|+..+||||||||||.++.+|+ .+.++++++.+++++++|.+||++....+ ++||++|
T Consensus 251 ~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~-~~~~~~~~e~~~~L~~LL~~~dg~~~~~~-ViVIaaT 328 (638)
T CHL00176 251 EFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRG-AGIGGGNDEREQTLNQLLTEMDGFKGNKG-VIVIAAT 328 (638)
T ss_pred HHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhccc-CCCCCCcHHHHHHHHHHHhhhccccCCCC-eeEEEec
Confidence 999999999999999999999999999999999999998876 34456788899999999999999876554 9999999
Q ss_pred CCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 043051 454 NRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTA 533 (845)
Q Consensus 454 N~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~ 533 (845)
|+++.||++|+||||||++|.|++|+.++|.+||+.++++..+. .+.++..+|..|+||+|+||+++|++|++.|+
T Consensus 329 N~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~----~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~ 404 (638)
T CHL00176 329 NRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS----PDVSLELIARRTPGFSGADLANLLNEAAILTA 404 (638)
T ss_pred CchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc----hhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999886655 67889999999999999999999999999999
Q ss_pred HcCCCccCHHHHHHHHHhcccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCceeeeecccccCC---CCc
Q 043051 534 RKDLDYIGQEELLEALKRQKGTFETGQEDSTDIPEELKLRLAYREAAVAVLACHLPDPYRPIIETDIKSIRSQP---NMR 610 (845)
Q Consensus 534 r~~~~~It~edl~~Al~r~k~~~~~g~e~~~~ls~~ek~~iA~hEaGhAlv~~~l~~~~~p~~kvtI~~i~~~p---alg 610 (845)
+++...|+++||.+|++++ ..|.++....++.+++++|||||||||+++++++.+ |++|||| +| ++|
T Consensus 405 r~~~~~It~~dl~~Ai~rv----~~g~~~~~~~~~~~~~~vA~hEaGhA~v~~~l~~~~-~v~kvtI-----~prg~~~G 474 (638)
T CHL00176 405 RRKKATITMKEIDTAIDRV----IAGLEGTPLEDSKNKRLIAYHEVGHAIVGTLLPNHD-PVQKVTL-----IPRGQAKG 474 (638)
T ss_pred HhCCCCcCHHHHHHHHHHH----HhhhccCccccHHHHHHHHHHhhhhHHHHhhccCCC-ceEEEEE-----eecCCCCC
Confidence 9999999999999999999 888887556788899999999999999999999988 9999999 66 667
Q ss_pred ---cccccccccCCHHHHHHHHHHhhchhHHHHHhhCCccccccccchHHHHHHHHHHHHHHhccCCcccccccc-CC-C
Q 043051 611 ---YAEISGRVFSRKNDYLNAIVRACAPRVIEEQMFGIDNMCWISSKATLDASRLAEFLILQTGMTAFGKAYYRN-QS-D 685 (845)
Q Consensus 611 ---~~p~~d~~~~tk~~l~~~I~v~LgGRaAEelvfG~~~vttGAs~Dl~~AT~lA~~mV~~~GMs~~G~~~~~~-~~-~ 685 (845)
+.|.++++++||.+|+++|+++|||||||+++||+.++||||++||++||+||+.||++||||++|++.|.. .. +
T Consensus 475 ~~~~~p~~~~~~~t~~~l~~~i~~~LgGraAE~~~fg~~~~~~Ga~~Dl~~AT~iA~~mv~~~Gm~~~g~~~~~~~~~~~ 554 (638)
T CHL00176 475 LTWFTPEEDQSLVSRSQILARIVGALGGRAAEEVVFGSTEVTTGASNDLQQVTNLARQMVTRFGMSSIGPISLESNNSTD 554 (638)
T ss_pred ceEecCCcccccccHHHHHHHHHHHhhhHHHHHHhcCCCCcCCCchhHHHHHHHHHHHHHHHhCCCcCCceeecCCCCcc
Confidence 568889999999999999999999999999999987789999999999999999999999999999999843 22 3
Q ss_pred cccc--------chHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhcCCCC
Q 043051 686 LVPN--------LATKLEALRDEYMRFAVE----KCASVLREYHSAVETITDILLEKGEIKAEEIWDIYKKAPQI 748 (845)
Q Consensus 686 ~~~~--------~s~~~~~~iD~ev~~l~~----~a~~lL~~~r~~Le~LA~~LLekEtL~~~ei~~il~~~~~~ 748 (845)
.|++ ||++++..||.||+++++ +|++||++||+.|++||++|||+|+|+++||++|++..+..
T Consensus 555 ~~~~~~~~~~~~~s~~~~~~iD~ev~~~l~~~~~~a~~iL~~~~~~l~~la~~Lle~Etl~~~ei~~il~~~~~~ 629 (638)
T CHL00176 555 PFLGRFMQRNSEYSEEIADKIDMEVRSILHTCYQYAYQILKDNRVLIDLLVELLLQKETIDGDEFREIVNSYTIL 629 (638)
T ss_pred cccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCHHHHHHHHhhcCCC
Confidence 4443 899999999999999998 89999999999999999999999999999999999876543
No 5
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=6.2e-87 Score=791.43 Aligned_cols=570 Identities=35% Similarity=0.527 Sum_probs=492.4
Q ss_pred HHHHHHHHHHHHhcccccCCCCCccccHHHHHHHHHcCCccEEEEEeCCcEEEEEcceecCCcccCCCCCCCCccceeEE
Q 043051 113 EWSRVLMTMCGRLKGTELDPENSHRIDFSDFWKLLNSNSVQYMEYSNYGQTVSVILPYYKDAKVEGKEGNPGKDIIYRRH 192 (845)
Q Consensus 113 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (845)
.|+.++++++.++..+...+...+.++|+.|.+.+.++.|.++.+. .++|+ .+.+++. .|
T Consensus 7 ~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ev~~~--~~tIK---~~~~e~~---------------~~ 66 (644)
T PRK10733 7 LWLVIAVVLMSVFQSFGPSESNGRKVDYSTFLQEVNQDQVREARIN--GREIN---VTKKDSN---------------RY 66 (644)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHcCCeEEEEEe--CCEEE---EEEcCCc---------------eE
Confidence 3555444444333333333334567999999999999999999998 67787 4433321 23
Q ss_pred EEecCCCCChhhHHHHHHhCCCeEEEeccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCCC
Q 043051 193 VVDRMPIDCWNDVWQKLHQQVVNVDVVNVNTVSAEVYSSVATAVIWSMRLALAVGLYIWIDNIMRPIYAKLIPCDLGTPP 272 (845)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 272 (845)
.+..|. .++.+...|..+++.+..... ...+++..++.+++|+++++++|+++.++|.. |
T Consensus 67 ~~~~~~--~~~~l~~~l~~~~v~~~~~~~-----~~~~~~~~i~~~~~~~il~ig~~~v~~g~mt~----------G--- 126 (644)
T PRK10733 67 TTYIPV--NDPKLLDNLLTKNVKVVGEPP-----EEPSLLASIFISWFPMLLLIGVWIFFMRQMQG----------G--- 126 (644)
T ss_pred EEeCCC--CCHHHHHHHHHcCCeEEecCc-----ccchHHHHHHHHHHHHHHHHHHHHHHHhhhcC----------C---
Confidence 333343 246788999999999877654 33456666677788889999999888887751 2
Q ss_pred CcccchhhhhhhhccccccccccccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChH
Q 043051 273 QKTRQPLQRRALGSLGKSRAKFISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGK 352 (845)
Q Consensus 273 ~~~~~~~~~~~~~~~~~s~a~~~~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGK 352 (845)
++...+. |++++..+..+ .....+|+|+.|.+.+++++.+++.+++.+..|..++..+|+|+||+|||||||
T Consensus 127 ------~~~~l~a-f~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GK 198 (644)
T PRK10733 127 ------GGKGAMS-FGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGK 198 (644)
T ss_pred ------CCceeEE-eccccccccCc-hhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCH
Confidence 1112333 77777766665 467889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEeechhHHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHH
Q 043051 353 TLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQ 432 (845)
Q Consensus 353 T~LArALA~elg~pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~q 432 (845)
|++|+++|+++++||+.++++++.++++|.+..+++.+|..|+..+||||||||||+++.+|+ .+.++++.+..+++++
T Consensus 199 t~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~-~~~~g~~~~~~~~ln~ 277 (644)
T PRK10733 199 TLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRG-AGLGGGHDEREQTLNQ 277 (644)
T ss_pred HHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccC-CCCCCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998886 3445667888999999
Q ss_pred HHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHH
Q 043051 433 ILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAEL 512 (845)
Q Consensus 433 LL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~ 512 (845)
+|.+||++....+ ++||+|||+|+.||++++||||||++|.|++|+.++|.+||+.|+++.++. .+.++..+|+.
T Consensus 278 lL~~mdg~~~~~~-vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~----~~~d~~~la~~ 352 (644)
T PRK10733 278 MLVEMDGFEGNEG-IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA----PDIDAAIIARG 352 (644)
T ss_pred HHHhhhcccCCCC-eeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCC----CcCCHHHHHhh
Confidence 9999999976555 999999999999999999999999999999999999999999999887765 56788899999
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcccccccCCCC-CCCchhHHHHHHHHHHHHHHHHHhhCCCC
Q 043051 513 TEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQKGTFETGQED-STDIPEELKLRLAYREAAVAVLACHLPDP 591 (845)
Q Consensus 513 t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~k~~~~~g~e~-~~~ls~~ek~~iA~hEaGhAlv~~~l~~~ 591 (845)
|.||||+||.++|++|++.|++.+...|++.||.+|++++ ..|.++ ...+++++++.+||||+||||+++++++.
T Consensus 353 t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v----~~g~~~~~~~~~~~~~~~~a~he~gha~~~~~~~~~ 428 (644)
T PRK10733 353 TPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI----MMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEH 428 (644)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHH----hcccccccccccHHHHHHHHHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999999999 778776 56788999999999999999999999998
Q ss_pred CCCceeeeecccccCC---CCc---cccccccccCCHHHHHHHHHHhhchhHHHHHhhCCccccccccchHHHHHHHHHH
Q 043051 592 YRPIIETDIKSIRSQP---NMR---YAEISGRVFSRKNDYLNAIVRACAPRVIEEQMFGIDNMCWISSKATLDASRLAEF 665 (845)
Q Consensus 592 ~~p~~kvtI~~i~~~p---alg---~~p~~d~~~~tk~~l~~~I~v~LgGRaAEelvfG~~~vttGAs~Dl~~AT~lA~~ 665 (845)
+ |++||+| +| ++| +.|.++++.+||.+|+++|+++|||||||+++||..++||||++||++||+||++
T Consensus 429 ~-~~~~v~i-----~prg~~~g~~~~~~~~~~~~~~~~~l~~~i~~~lgGraAE~~~~g~~~~ttGa~~Dl~~AT~lA~~ 502 (644)
T PRK10733 429 D-PVHKVTI-----IPRGRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARN 502 (644)
T ss_pred C-ceeEEEE-----eccCCCcceeEECCCcccccccHHHHHHHHHHHHhhHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 8 9999999 77 666 5688888899999999999999999999999999877899999999999999999
Q ss_pred HHHHhccCC-cccccc-ccCCCcccc--------chHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHhc
Q 043051 666 LILQTGMTA-FGKAYY-RNQSDLVPN--------LATKLEALRDEYMRFAVE----KCASVLREYHSAVETITDILLEKG 731 (845)
Q Consensus 666 mV~~~GMs~-~G~~~~-~~~~~~~~~--------~s~~~~~~iD~ev~~l~~----~a~~lL~~~r~~Le~LA~~LLekE 731 (845)
||++||||+ +|++.| ..+++.|++ ||+++++.||+||+++++ +|++||++||+.|++||++|+|+|
T Consensus 503 mv~~~Gms~~lg~~~~~~~~~~~~lg~~~~~~~~~s~~~~~~id~ev~~il~~~~~~a~~iL~~~~~~l~~la~~Lle~e 582 (644)
T PRK10733 503 MVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQLLTDNMDILHAMKDALMKYE 582 (644)
T ss_pred HHHHhCCCccccchhhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 999999999 999998 444444443 899999999999999998 999999999999999999999999
Q ss_pred ccCHHHHHHHHhcCC
Q 043051 732 EIKAEEIWDIYKKAP 746 (845)
Q Consensus 732 tL~~~ei~~il~~~~ 746 (845)
||+++||++|+...+
T Consensus 583 tl~~~ei~~i~~~~~ 597 (644)
T PRK10733 583 TIDAPQIDDLMARRD 597 (644)
T ss_pred eeCHHHHHHHHhcCC
Confidence 999999999998653
No 6
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=4e-78 Score=699.01 Aligned_cols=475 Identities=44% Similarity=0.641 Sum_probs=420.6
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHhhhhhhhhccccCCCCCCCCcccchhhhhhhhccccccccccccccCCCCCcccccc
Q 043051 232 VATAVIWSMR-LALAVGLYIWIDNIMRPIYAKLIPCDLGTPPQKTRQPLQRRALGSLGKSRAKFISAEETTGVTFDDFAG 310 (845)
Q Consensus 232 ~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~s~a~~~~~~~~~~~tF~dVvG 310 (845)
|..++..+.| +++++++|+++.+++. | ++++.+ .+++++++++..+ .+.++|+||+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~---------~~~~~~-~~~~~~~~~~~~~-~~~~~~~di~g 59 (495)
T TIGR01241 2 LLGFLFSLLPPILLLVGVWFFFRRQMQ-----------G---------GGGRAF-SFGKSKAKLLNEE-KPKVTFKDVAG 59 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-----------C---------CCCCCc-CCCCCccccccCC-CCCCCHHHhCC
Confidence 3445555555 7777778877777775 3 112223 3889999888766 88999999999
Q ss_pred cHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhhhhhhhhhHHHH
Q 043051 311 QEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDL 390 (845)
Q Consensus 311 ~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~vG~~~~~vr~l 390 (845)
++++|+++.+++.++++++.|...|..+|+|+|||||||||||++|+++|+++++||+.+++++|.+.++|.+...++.+
T Consensus 60 ~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~ 139 (495)
T TIGR01241 60 IDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDL 139 (495)
T ss_pred HHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCccc
Q 043051 391 FASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFD 470 (845)
Q Consensus 391 F~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFd 470 (845)
|+.|+.++||||||||||.++.+|+. +..+.+.+..++++++|.+||++....+ ++||+|||+|+.|||+++||||||
T Consensus 140 f~~a~~~~p~Il~iDEid~l~~~r~~-~~~~~~~~~~~~~~~lL~~~d~~~~~~~-v~vI~aTn~~~~ld~al~r~gRfd 217 (495)
T TIGR01241 140 FEQAKKNAPCIIFIDEIDAVGRQRGA-GLGGGNDEREQTLNQLLVEMDGFGTNTG-VIVIAATNRPDVLDPALLRPGRFD 217 (495)
T ss_pred HHHHHhcCCCEEEEechhhhhhcccc-CcCCccHHHHHHHHHHHhhhccccCCCC-eEEEEecCChhhcCHHHhcCCcce
Confidence 99999999999999999999988763 2445567788999999999999875554 999999999999999999999999
Q ss_pred EEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 043051 471 KIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALK 550 (845)
Q Consensus 471 r~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~ 550 (845)
+.|.++.|+.++|.+||+.+++...+. .+.++..+|..|.||+|+||.++|++|++.|.+++...|+.+||.+|++
T Consensus 218 ~~i~i~~Pd~~~R~~il~~~l~~~~~~----~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~ 293 (495)
T TIGR01241 218 RQVVVDLPDIKGREEILKVHAKNKKLA----PDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAID 293 (495)
T ss_pred EEEEcCCCCHHHHHHHHHHHHhcCCCC----cchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 999999999999999999999876655 5678899999999999999999999999999999988999999999999
Q ss_pred hcccccccCCCC-CCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCceeeeecccccCCCCc---cccccccccCCHHHHH
Q 043051 551 RQKGTFETGQED-STDIPEELKLRLAYREAAVAVLACHLPDPYRPIIETDIKSIRSQPNMR---YAEISGRVFSRKNDYL 626 (845)
Q Consensus 551 r~k~~~~~g~e~-~~~ls~~ek~~iA~hEaGhAlv~~~l~~~~~p~~kvtI~~i~~~palg---~~p~~d~~~~tk~~l~ 626 (845)
++ ..|.+. ...+++.+++++|+|||||||+++++++.. |+++++|.... .++| +.|.++.+..|+.+|+
T Consensus 294 ~~----~~~~~~~~~~~~~~~~~~~A~hEaGhAlv~~~l~~~~-~v~~vsi~prg--~~~G~~~~~~~~~~~~~t~~~l~ 366 (495)
T TIGR01241 294 RV----IAGPEKKSRVISEKEKKLVAYHEAGHALVGLLLKDAD-PVHKVTIIPRG--QALGYTQFLPEEDKYLYTKSQLL 366 (495)
T ss_pred HH----hcccccccccccHHHHHHHHHHHHhHHHHHHhcCCCC-ceEEEEEeecC--CccceEEecCccccccCCHHHHH
Confidence 99 777665 556889999999999999999999998887 99999992221 1566 4466678899999999
Q ss_pred HHHHHhhchhHHHHHhhCCccccccccchHHHHHHHHHHHHHHhccCC-ccccccccC-CCcc--------ccchHHHHH
Q 043051 627 NAIVRACAPRVIEEQMFGIDNMCWISSKATLDASRLAEFLILQTGMTA-FGKAYYRNQ-SDLV--------PNLATKLEA 696 (845)
Q Consensus 627 ~~I~v~LgGRaAEelvfG~~~vttGAs~Dl~~AT~lA~~mV~~~GMs~-~G~~~~~~~-~~~~--------~~~s~~~~~ 696 (845)
++|+++|||||||+++||+. |+||++||++||++|+.||.+|||++ +|++.+..+ ++.+ ..+|+.++.
T Consensus 367 ~~i~v~LaGraAE~~~~G~~--s~Ga~~Dl~~At~lA~~mv~~~Gm~~~~g~~~~~~~~~~~~l~~~~~~~~~~s~~~~~ 444 (495)
T TIGR01241 367 AQIAVLLGGRAAEEIIFGEV--TTGASNDIKQATNIARAMVTEWGMSDKLGPVAYGSDGGDVFLGRGFAKAKEYSEETAR 444 (495)
T ss_pred HHHHHHhhHHHHHHHHhcCC--CCCchHHHHHHHHHHHHHHHHhCCCcccCceeeccCccccccccccccccccCHHHHH
Confidence 99999999999999999966 99999999999999999999999999 999998432 2222 238999999
Q ss_pred HHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHh
Q 043051 697 LRDEYMRFAVE----KCASVLREYHSAVETITDILLEKGEIKAEEIWDIYK 743 (845)
Q Consensus 697 ~iD~ev~~l~~----~a~~lL~~~r~~Le~LA~~LLekEtL~~~ei~~il~ 743 (845)
.+|+|++++++ +|++||++||+.|++||++|+++|+|+++||++|++
T Consensus 445 ~id~~v~~lL~~a~~ra~~lL~~~~~~l~~la~~Ll~~e~L~~~ei~~il~ 495 (495)
T TIGR01241 445 EIDEEVKRIIEEAYKRAKQILTENRDELELLAKALLEKETITREEIKELLA 495 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCeeCHHHHHHHhC
Confidence 99999987777 999999999999999999999999999999999984
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-57 Score=481.50 Aligned_cols=249 Identities=47% Similarity=0.750 Sum_probs=239.8
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHH
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFV 376 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~ 376 (845)
++.|.+||+||.|+++.+++|+|.|.. |++|+.|..+|+.||+|||||||||||||+||||+|++.++.|+.+.+|+|+
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV 222 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV 222 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHH
Confidence 558899999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCC
Q 043051 377 EMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRL 456 (845)
Q Consensus 377 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~p 456 (845)
.+|+|.++.-||++|..|+.++||||||||||++|.+|.+. ..++..|.+.++++||.+||||... ++|-||+|||++
T Consensus 223 qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~-~t~gDrEVQRTmleLL~qlDGFD~~-~nvKVI~ATNR~ 300 (406)
T COG1222 223 QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDS-GTSGDREVQRTMLELLNQLDGFDPR-GNVKVIMATNRP 300 (406)
T ss_pred HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccC-CCCchHHHHHHHHHHHHhccCCCCC-CCeEEEEecCCc
Confidence 99999999999999999999999999999999999999744 3467889999999999999999864 459999999999
Q ss_pred CCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcC
Q 043051 457 DILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKD 536 (845)
Q Consensus 457 d~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~ 536 (845)
+.|||||+|||||||.|+||+||.++|.+||+.|.++..+. .+++++.||+.|+|+|||||.++|.||.+.|.|..
T Consensus 301 D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~----~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~ 376 (406)
T COG1222 301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA----DDVDLELLARLTEGFSGADLKAICTEAGMFAIRER 376 (406)
T ss_pred cccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc----cCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc
Confidence 99999999999999999999999999999999999999888 78999999999999999999999999999999999
Q ss_pred CCccCHHHHHHHHHhc
Q 043051 537 LDYIGQEELLEALKRQ 552 (845)
Q Consensus 537 ~~~It~edl~~Al~r~ 552 (845)
+..||++||.+|++++
T Consensus 377 R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 377 RDEVTMEDFLKAVEKV 392 (406)
T ss_pred cCeecHHHHHHHHHHH
Confidence 9999999999999998
No 8
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=2.2e-53 Score=521.50 Aligned_cols=311 Identities=19% Similarity=0.182 Sum_probs=260.9
Q ss_pred HHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhh------------------------------
Q 043051 330 EFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMF------------------------------ 379 (845)
Q Consensus 330 ~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~------------------------------ 379 (845)
.+.++|+++|+||||+||||||||+||||+|+++++||+.+++++|++.+
T Consensus 1621 ~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e 1700 (2281)
T CHL00206 1621 FSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTE 1700 (2281)
T ss_pred HHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchh
Confidence 44678999999999999999999999999999999999999999998533
Q ss_pred -------------hhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcc--cC
Q 043051 380 -------------VGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKV--ST 444 (845)
Q Consensus 380 -------------vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~--~~ 444 (845)
++++..+|+.+|+.|++++||||||||||+++.+. ....++.+|+.+|||+.. ..
T Consensus 1701 ~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d----------s~~ltL~qLLneLDg~~~~~s~ 1770 (2281)
T CHL00206 1701 LLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE----------SNYLSLGLLVNSLSRDCERCST 1770 (2281)
T ss_pred hhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc----------cceehHHHHHHHhccccccCCC
Confidence 23344569999999999999999999999997541 223568899999998742 34
Q ss_pred CcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHH
Q 043051 445 SQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNI 524 (845)
Q Consensus 445 ~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~L 524 (845)
.+|+||||||+|+.|||||+||||||+.|.|+.|+..+|++++..++...++.... ..++++.+|+.|+|||||||+++
T Consensus 1771 ~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~-~~vdl~~LA~~T~GfSGADLanL 1849 (2281)
T CHL00206 1771 RNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEK-KMFHTNGFGSITMGSNARDLVAL 1849 (2281)
T ss_pred CCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCc-ccccHHHHHHhCCCCCHHHHHHH
Confidence 56999999999999999999999999999999999999999998765433333211 23578999999999999999999
Q ss_pred HHHHHHHHHHcCCCccCHHHHHHHHHhcccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCceeeeecccc
Q 043051 525 LNEAGILTARKDLDYIGQEELLEALKRQKGTFETGQEDSTDIPEELKLRLAYREAAVAVLACHLPDPYRPIIETDIKSIR 604 (845)
Q Consensus 525 vneAal~A~r~~~~~It~edl~~Al~r~k~~~~~g~e~~~~ls~~ek~~iA~hEaGhAlv~~~l~~~~~p~~kvtI~~i~ 604 (845)
||||++.|+++++..|+.++++.|++|+ .+|.+.. ..+..++ .+++||+||||++++|+..+ |+++|||....
T Consensus 1850 vNEAaliAirq~ks~Id~~~I~~Al~Rq----~~g~~~~-~~~~~~~-~ia~yEiGhAvvq~~L~~~~-pv~kISIy~~~ 1922 (2281)
T CHL00206 1850 TNEALSISITQKKSIIDTNTIRSALHRQ----TWDLRSQ-VRSVQDH-GILFYQIGRAVAQNVLLSNC-PIDPISIYMKK 1922 (2281)
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHHHH----Hhhhhhc-ccCcchh-hhhhhHHhHHHHHHhccCCC-CcceEEEecCC
Confidence 9999999999999999999999999999 7887652 2233333 46999999999999999998 99999993111
Q ss_pred ----cCCCCc---cccccccccCCHHHHHHHHHHhhchhHHHHHhhCCccccccccchHHHHHHHHHHHHHHhccCC
Q 043051 605 ----SQPNMR---YAEISGRVFSRKNDYLNAIVRACAPRVIEEQMFGIDNMCWISSKATLDASRLAEFLILQTGMTA 674 (845)
Q Consensus 605 ----~~palg---~~p~~d~~~~tk~~l~~~I~v~LgGRaAEelvfG~~~vttGAs~Dl~~AT~lA~~mV~~~GMs~ 674 (845)
+-.+.| |+|.+ ..+++.+++++|++||||||||+++|+.. + .|+.||+.|||++
T Consensus 1923 ~~~r~~~~yl~~wyle~~--~~mkk~tiL~~Il~cLAGraAedlwf~~~--~------------~~~n~It~yg~vE 1983 (2281)
T CHL00206 1923 KSCKEGDSYLYKWYFELG--TSMKKLTILLYLLSCSAGSVAQDLWSLPG--P------------DEKNGITSYGLVE 1983 (2281)
T ss_pred ccccCcccceeEeecCCc--ccCCHHHHHHHHHHHhhhhhhhhhccCcc--h------------hhhcCcccccchh
Confidence 011334 66654 89999999999999999999999999865 2 5899999999987
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-49 Score=448.70 Aligned_cols=245 Identities=47% Similarity=0.743 Sum_probs=232.2
Q ss_pred CCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHh
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM 378 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~ 378 (845)
.++++|+||.|++++|++|++.|.+ +++|+.|.++|+.+|+|||||||||||||++|||+|++++.+|++++|.++.++
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk 507 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSK 507 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHH
Confidence 7899999999999999999999988 999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCC
Q 043051 379 FVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDI 458 (845)
Q Consensus 379 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~ 458 (845)
|+|.+++.++++|.+|+..+|||||+||||+++..|+++. +......|++||++|||+....+ |+||||||+|+.
T Consensus 508 ~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~----~~v~~RVlsqLLtEmDG~e~~k~-V~ViAATNRpd~ 582 (693)
T KOG0730|consen 508 YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSS----SGVTDRVLSQLLTEMDGLEALKN-VLVIAATNRPDM 582 (693)
T ss_pred hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCc----cchHHHHHHHHHHHcccccccCc-EEEEeccCChhh
Confidence 9999999999999999999999999999999999997322 25667899999999999987655 999999999999
Q ss_pred CChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCC-
Q 043051 459 LDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDL- 537 (845)
Q Consensus 459 LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~- 537 (845)
||+||+||||||+.|+|++||.+.|.+||+.++++.++. +++++..||..|.||||+||.++|++|++.|.+++-
T Consensus 583 ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~----~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~ 658 (693)
T KOG0730|consen 583 IDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFS----EDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE 658 (693)
T ss_pred cCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCC----ccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999888 679999999999999999999999999999999865
Q ss_pred -CccCHHHHHHHHHhcc
Q 043051 538 -DYIGQEELLEALKRQK 553 (845)
Q Consensus 538 -~~It~edl~~Al~r~k 553 (845)
..|+.+||++|+..++
T Consensus 659 a~~i~~~hf~~al~~~r 675 (693)
T KOG0730|consen 659 ATEITWQHFEEALKAVR 675 (693)
T ss_pred cccccHHHHHHHHHhhc
Confidence 4799999999999883
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-47 Score=425.61 Aligned_cols=246 Identities=42% Similarity=0.672 Sum_probs=226.8
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH
Q 043051 299 ETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE 377 (845)
Q Consensus 299 ~~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~ 377 (845)
..|.++|+||.|+++++.+|...+.+ +++|+.|+.+|+..|.|||||||||||||+||||+|+|+|..|+.|.|.++.+
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN 583 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN 583 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH
Confidence 47899999999999999999987666 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCC
Q 043051 378 MFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLD 457 (845)
Q Consensus 378 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd 457 (845)
+|||.++..||.+|..|+.++|||||+||||+|..+|+..+ +......++|||+||||.....+ |.||||||+||
T Consensus 584 kYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~----s~~s~RvvNqLLtElDGl~~R~g-V~viaATNRPD 658 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG----SSVSSRVVNQLLTELDGLEERRG-VYVIAATNRPD 658 (802)
T ss_pred HHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC----chhHHHHHHHHHHHhcccccccc-eEEEeecCCCc
Confidence 99999999999999999999999999999999999997432 45567889999999999987777 99999999999
Q ss_pred CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHh--hhcccchhhhhhHHHHHHHHcc--CCcHHHHHHHHHHHHHHHH
Q 043051 458 ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHAR--NKYFRSEEEKDVLLQEIAELTE--DFTGAELQNILNEAGILTA 533 (845)
Q Consensus 458 ~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~--~~~l~~~~~~d~dl~~LA~~t~--GfSgaDL~~LvneAal~A~ 533 (845)
.+|||++||||||+.+++++|+.++|.+||+.+++ +.++. .+++++.||+.+. ||||+||+.||++|++.|.
T Consensus 659 iIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~----~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL 734 (802)
T KOG0733|consen 659 IIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLS----SDVDLDEIARNTKCEGFTGADLAALVREASILAL 734 (802)
T ss_pred ccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCC----cccCHHHHhhcccccCCchhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 44444 7899999999877 9999999999999999998
Q ss_pred HcCC----------------CccCHHHHHHHHHhcc
Q 043051 534 RKDL----------------DYIGQEELLEALKRQK 553 (845)
Q Consensus 534 r~~~----------------~~It~edl~~Al~r~k 553 (845)
++.. -.+++.||++|+.+++
T Consensus 735 ~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~ 770 (802)
T KOG0733|consen 735 RESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIR 770 (802)
T ss_pred HHHHhhccccCcccceeeeeeeecHHHHHHHHHhcC
Confidence 7521 1367789999999994
No 11
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-43 Score=363.55 Aligned_cols=253 Identities=38% Similarity=0.634 Sum_probs=238.2
Q ss_pred ccccccCCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeec
Q 043051 294 FISAEETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANG 372 (845)
Q Consensus 294 ~~~~~~~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~ 372 (845)
++.+.+.+.+++.||.|++-.|+++++.+.. |.+.+.|++.|+.||+|||||||||||||+||+|+|+.....|+.+.|
T Consensus 143 ml~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvg 222 (408)
T KOG0727|consen 143 MLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVG 222 (408)
T ss_pred ccCCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeecc
Confidence 3445568999999999999999999999998 889999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEE
Q 043051 373 TDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGA 452 (845)
Q Consensus 373 sdf~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaa 452 (845)
|+|+.+|.|.++..+|++|..|+.++|+||||||||+++.+|-+.+ .|...+.+..|..||.+||||....+ |-||.+
T Consensus 223 sefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaq-tgadrevqril~ellnqmdgfdq~~n-vkvima 300 (408)
T KOG0727|consen 223 SEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQ-TGADREVQRILIELLNQMDGFDQTTN-VKVIMA 300 (408)
T ss_pred HHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhcccc-ccccHHHHHHHHHHHHhccCcCcccc-eEEEEe
Confidence 9999999999999999999999999999999999999999986433 45578899999999999999987766 999999
Q ss_pred cCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 043051 453 TNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILT 532 (845)
Q Consensus 453 TN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A 532 (845)
||+.+.|||||+||||+|+.|+||+||..+++-+|.....+..+. ++++++.+..+-...||+||..+|.+|.+.|
T Consensus 301 tnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls----~~vdle~~v~rpdkis~adi~aicqeagm~a 376 (408)
T KOG0727|consen 301 TNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS----DEVDLEDLVARPDKISGADINAICQEAGMLA 376 (408)
T ss_pred cCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC----cccCHHHHhcCccccchhhHHHHHHHHhHHH
Confidence 999999999999999999999999999999999999999888887 7899999999999999999999999999999
Q ss_pred HHcCCCccCHHHHHHHHHhc
Q 043051 533 ARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 533 ~r~~~~~It~edl~~Al~r~ 552 (845)
.+.++-.|...||+++....
T Consensus 377 vr~nryvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 377 VRENRYVVLQKDFEKAYKTV 396 (408)
T ss_pred HHhcceeeeHHHHHHHHHhh
Confidence 99999999999999998876
No 12
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-43 Score=363.51 Aligned_cols=249 Identities=40% Similarity=0.691 Sum_probs=237.7
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHH
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFV 376 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~ 376 (845)
++.|..+++-|.|.+...++++++++. .++|+.|..+|+..|+|+|||||||||||+||+|+|....+.|+.+++|+++
T Consensus 139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselv 218 (404)
T KOG0728|consen 139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 218 (404)
T ss_pred hhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHH
Confidence 557888999999999999999999998 8999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCC
Q 043051 377 EMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRL 456 (845)
Q Consensus 377 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~p 456 (845)
.+|.|.+..-+|++|-.|+.++|+|||+||||.+|..|..++ +|++.+.+.+.+.||.++|||+...+ +-||.|||+.
T Consensus 219 qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~-~ggdsevqrtmlellnqldgfeatkn-ikvimatnri 296 (404)
T KOG0728|consen 219 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESG-SGGDSEVQRTMLELLNQLDGFEATKN-IKVIMATNRI 296 (404)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCC-CCccHHHHHHHHHHHHhccccccccc-eEEEEecccc
Confidence 999999999999999999999999999999999999997443 45788999999999999999987666 9999999999
Q ss_pred CCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcC
Q 043051 457 DILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKD 536 (845)
Q Consensus 457 d~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~ 536 (845)
+.|||||+||||+|+.|+||+|+.+.|.+||+.|.++.++. ..+++..+|...+|.||+++..+|.+|.++|.|..
T Consensus 297 dild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~----rgi~l~kiaekm~gasgaevk~vcteagm~alrer 372 (404)
T KOG0728|consen 297 DILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT----RGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER 372 (404)
T ss_pred ccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchh----cccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh
Confidence 99999999999999999999999999999999999998887 78899999999999999999999999999999998
Q ss_pred CCccCHHHHHHHHHhc
Q 043051 537 LDYIGQEELLEALKRQ 552 (845)
Q Consensus 537 ~~~It~edl~~Al~r~ 552 (845)
+-.+|++||+-|+.++
T Consensus 373 rvhvtqedfemav~kv 388 (404)
T KOG0728|consen 373 RVHVTQEDFEMAVAKV 388 (404)
T ss_pred hccccHHHHHHHHHHH
Confidence 8899999999999998
No 13
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-44 Score=398.79 Aligned_cols=228 Identities=42% Similarity=0.674 Sum_probs=213.4
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhh
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMF 379 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~ 379 (845)
..+++|+|+.|.+....+|.+++.++++|+.|..+|+.||+||||+||||||||+||+|+|+++++||+.+++.++++-+
T Consensus 184 ~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 184 ESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCccc---CCcEEEEEEcCCC
Q 043051 380 VGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVS---TSQVLVIGATNRL 456 (845)
Q Consensus 380 vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~---~~~ViVIaaTN~p 456 (845)
.|.+++++|++|++|+.++|||+||||||+++++|.. ++.+.....+.|||..||++... ...|+||+|||+|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~----aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRP 339 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE----AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRP 339 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhh----HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCC
Confidence 9999999999999999999999999999999999863 22344456788999999998754 4569999999999
Q ss_pred CCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHc
Q 043051 457 DILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARK 535 (845)
Q Consensus 457 d~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~ 535 (845)
|.|||+|+|+||||+.|.+..|+..+|.+||+..+++..+. .+.++.+||++|+||.|+||..||.+|+..|.++
T Consensus 340 DslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~----g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 340 DSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLS----GDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred cccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCC----CCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988877 6889999999999999999999999999999876
No 14
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-43 Score=365.13 Aligned_cols=249 Identities=41% Similarity=0.697 Sum_probs=235.1
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHH
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFV 376 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~ 376 (845)
++.|.-+++||.|.+..+++|.+.+-. +.++++|.++|+++|+|+|+|||||||||++|||.|...+..|..+.+..++
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLV 242 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 242 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHH
Confidence 346788999999999999999886655 8899999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCC
Q 043051 377 EMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRL 456 (845)
Q Consensus 377 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~p 456 (845)
.||.|.+++.+|+.|..|+..+|+||||||+|++|.+|-+++ ..+..+.+.+++.||.++|||..+.. |-|||+||+.
T Consensus 243 QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSe-k~GDREVQRTMLELLNQLDGFss~~~-vKviAATNRv 320 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSE-KAGDREVQRTMLELLNQLDGFSSDDR-VKVIAATNRV 320 (424)
T ss_pred hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhcccccccc-ccccHHHHHHHHHHHHhhcCCCCccc-eEEEeecccc
Confidence 999999999999999999999999999999999999997443 46678999999999999999986665 9999999999
Q ss_pred CCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcC
Q 043051 457 DILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKD 536 (845)
Q Consensus 457 d~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~ 536 (845)
+.|||||+|.||+|+.|.||.|+.+.|..|++.|.++.... +++.++.+|+-|.+|.|+++..+|-+|.++|.|++
T Consensus 321 DiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~----~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~ 396 (424)
T KOG0652|consen 321 DILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVS----DDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRG 396 (424)
T ss_pred cccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCC----CCCCHHHHhhcccccCchhheeeehhhhHHHHhcc
Confidence 99999999999999999999999999999999999998877 88999999999999999999999999999999999
Q ss_pred CCccCHHHHHHHHHhc
Q 043051 537 LDYIGQEELLEALKRQ 552 (845)
Q Consensus 537 ~~~It~edl~~Al~r~ 552 (845)
...|+.+||.+++..+
T Consensus 397 atev~heDfmegI~eV 412 (424)
T KOG0652|consen 397 ATEVTHEDFMEGILEV 412 (424)
T ss_pred cccccHHHHHHHHHHH
Confidence 9999999999998876
No 15
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-43 Score=364.53 Aligned_cols=250 Identities=40% Similarity=0.667 Sum_probs=235.9
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhH
Q 043051 297 AEETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDF 375 (845)
Q Consensus 297 ~~~~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf 375 (845)
.++.+.+|++||.|+.+..+.|++++.. +.+|++|-++|+.+|+|||||||||||||++|||+|+..+.-|+.+-+|++
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 3568999999999999999999999998 889999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCC
Q 043051 376 VEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNR 455 (845)
Q Consensus 376 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~ 455 (845)
+.+|+|.++.-+|++|+.|+....||||+||||++|+.|-+.+. ++..+.+.+++.++.++|||... +++-|+.|||+
T Consensus 248 vqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~-ggdnevqrtmleli~qldgfdpr-gnikvlmatnr 325 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGA-GGDNEVQRTMLELINQLDGFDPR-GNIKVLMATNR 325 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCC-CCcHHHHHHHHHHHHhccCCCCC-CCeEEEeecCC
Confidence 99999999999999999999999999999999999999864443 55678899999999999999854 55999999999
Q ss_pred CCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHc
Q 043051 456 LDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARK 535 (845)
Q Consensus 456 pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~ 535 (845)
|+.|||||+||||+|+.++|.+||.+.|..||+.|.+..... .++-++.||+++++-+|++|+.+|.+|.+.|.+.
T Consensus 326 pdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsve----rdir~ellarlcpnstgaeirsvcteagmfaira 401 (435)
T KOG0729|consen 326 PDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVE----RDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRA 401 (435)
T ss_pred CCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccc----cchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHH
Confidence 999999999999999999999999999999999999887666 7888999999999999999999999999999999
Q ss_pred CCCccCHHHHHHHHHhc
Q 043051 536 DLDYIGQEELLEALKRQ 552 (845)
Q Consensus 536 ~~~~It~edl~~Al~r~ 552 (845)
.++..|..||.+|++++
T Consensus 402 rrk~atekdfl~av~kv 418 (435)
T KOG0729|consen 402 RRKVATEKDFLDAVNKV 418 (435)
T ss_pred HhhhhhHHHHHHHHHHH
Confidence 88999999999999999
No 16
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-43 Score=399.99 Aligned_cols=256 Identities=39% Similarity=0.661 Sum_probs=231.2
Q ss_pred cccccccccCCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 043051 291 RAKFISAEETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFA 369 (845)
Q Consensus 291 ~a~~~~~~~~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~ 369 (845)
.+.-+.+.+.|+++|+||.|.+++|.++.+.++. |++|+.| ..|.++--|||||||||||||++|||+|.|+...|++
T Consensus 657 fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLf-ssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlS 735 (953)
T KOG0736|consen 657 FSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELF-SSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLS 735 (953)
T ss_pred hhhhcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhh-hccccccceeEEECCCCCchHHHHHHHHhhceeeEEe
Confidence 3344455678999999999999999999999988 8999877 4578878899999999999999999999999999999
Q ss_pred eechhHHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcc-cCCcEE
Q 043051 370 ANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKV-STSQVL 448 (845)
Q Consensus 370 vs~sdf~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~-~~~~Vi 448 (845)
|.|.++.+||+|+++++||++|+.||..+|||||+||+|.++++||.++++|+- ....+.|||.||||+.. +...|+
T Consensus 736 VKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGV--MDRVVSQLLAELDgls~~~s~~VF 813 (953)
T KOG0736|consen 736 VKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGV--MDRVVSQLLAELDGLSDSSSQDVF 813 (953)
T ss_pred ecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCcccc--HHHHHHHHHHHhhcccCCCCCceE
Confidence 999999999999999999999999999999999999999999999987766654 55678999999999986 566799
Q ss_pred EEEEcCCCCCCChhhhccCcccEEEEeCCC-CHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHcc-CCcHHHHHHHHH
Q 043051 449 VIGATNRLDILDPALLRKGRFDKIVRVGLP-SKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTE-DFTGAELQNILN 526 (845)
Q Consensus 449 VIaaTN~pd~LDpALlRpgRFdr~I~v~~P-d~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~-GfSgaDL~~Lvn 526 (845)
||+||||||.|||||+||||||..+++..+ |.+.+..+|+...++..++ .++++..||+.++ .|||||+-.+|.
T Consensus 814 ViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLd----edVdL~eiAk~cp~~~TGADlYsLCS 889 (953)
T KOG0736|consen 814 VIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLD----EDVDLVEIAKKCPPNMTGADLYSLCS 889 (953)
T ss_pred EEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCC----CCcCHHHHHhhCCcCCchhHHHHHHH
Confidence 999999999999999999999999999988 6778889999999999888 7899999999986 799999999999
Q ss_pred HHHHHHHHcCC-----------------CccCHHHHHHHHHhcc
Q 043051 527 EAGILTARKDL-----------------DYIGQEELLEALKRQK 553 (845)
Q Consensus 527 eAal~A~r~~~-----------------~~It~edl~~Al~r~k 553 (845)
.|.+.|.++.. -.|+++||.+++++..
T Consensus 890 dA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~ 933 (953)
T KOG0736|consen 890 DAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQ 933 (953)
T ss_pred HHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcC
Confidence 99998887521 1589999999999983
No 17
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-43 Score=366.63 Aligned_cols=249 Identities=38% Similarity=0.645 Sum_probs=236.4
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHH
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFV 376 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~ 376 (845)
++.|.-+|.|+.|++...+++.+.+.. |.+|+.|..+|+++|+||+|||+||||||+||+|+|+.....|+.+-+|+++
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 557788999999999999999999998 8999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCC
Q 043051 377 EMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRL 456 (845)
Q Consensus 377 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~p 456 (845)
.+|.|.++..+|.+|.-|..++|+|+||||||++|.+|= +..+++..+.+.+++.||+++|||... +.|-||.|||+.
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRy-ds~SggerEiQrtmLELLNQldGFdsr-gDvKvimATnri 334 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRY-DSNSGGEREIQRTMLELLNQLDGFDSR-GDVKVIMATNRI 334 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccc-cCCCccHHHHHHHHHHHHHhccCcccc-CCeEEEEecccc
Confidence 999999999999999999999999999999999999986 344577889999999999999999875 459999999999
Q ss_pred CCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcC
Q 043051 457 DILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKD 536 (845)
Q Consensus 457 d~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~ 536 (845)
+.|||||+||||+|+.|.|+.||...++.||..|..+..+. .++.++.+...-..+||+||..+|.+|.++|.|..
T Consensus 335 e~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~----~dVnle~li~~kddlSGAdIkAictEaGllAlRer 410 (440)
T KOG0726|consen 335 ETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLA----EDVNLEELIMTKDDLSGADIKAICTEAGLLALRER 410 (440)
T ss_pred cccCHhhcCCCccccccccCCCchhhhceeEEEeecccchh----ccccHHHHhhcccccccccHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999888777 78889999988899999999999999999999999
Q ss_pred CCccCHHHHHHHHHhc
Q 043051 537 LDYIGQEELLEALKRQ 552 (845)
Q Consensus 537 ~~~It~edl~~Al~r~ 552 (845)
+-.++++||..|.+++
T Consensus 411 Rm~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 411 RMKVTMEDFKKAKEKV 426 (440)
T ss_pred HhhccHHHHHHHHHHH
Confidence 9999999999999988
No 18
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=4.4e-42 Score=353.53 Aligned_cols=242 Identities=37% Similarity=0.595 Sum_probs=223.1
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE 377 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~ 377 (845)
+..+.++|+||+|++++|+..+-++.+|++|++|..+ .|++||+|||||||||++|||+|+++++||+.+.+.+++.
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 3467899999999999999999999999999998776 4999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCC
Q 043051 378 MFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLD 457 (845)
Q Consensus 378 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd 457 (845)
.++|.++.+++.+|+.|++.+|||+||||+|+++-.|...+..| .....+|.||++|||...+.+ |+.|||||+|+
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRG---DVsEiVNALLTelDgi~eneG-VvtIaaTN~p~ 265 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRG---DVSEIVNALLTELDGIKENEG-VVTIAATNRPE 265 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcc---cHHHHHHHHHHhccCcccCCc-eEEEeecCChh
Confidence 99999999999999999999999999999999998876444433 345678999999999997777 99999999999
Q ss_pred CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHH-HHHHHHHHHHHcC
Q 043051 458 ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQN-ILNEAGILTARKD 536 (845)
Q Consensus 458 ~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~-LvneAal~A~r~~ 536 (845)
.||||+++ ||...|.|.+|+.++|.+|++.+++..++. -+.+++.+++.|.||||+||.. ++..|...|...+
T Consensus 266 ~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plp----v~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed 339 (368)
T COG1223 266 LLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLP----VDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED 339 (368)
T ss_pred hcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCc----cccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc
Confidence 99999999 999999999999999999999999998887 5677999999999999999985 6777888899999
Q ss_pred CCccCHHHHHHHHHhc
Q 043051 537 LDYIGQEELLEALKRQ 552 (845)
Q Consensus 537 ~~~It~edl~~Al~r~ 552 (845)
++.|+.+||+.|+.+.
T Consensus 340 ~e~v~~edie~al~k~ 355 (368)
T COG1223 340 REKVEREDIEKALKKE 355 (368)
T ss_pred hhhhhHHHHHHHHHhh
Confidence 9999999999999975
No 19
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-41 Score=361.65 Aligned_cols=245 Identities=36% Similarity=0.547 Sum_probs=222.0
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH
Q 043051 299 ETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE 377 (845)
Q Consensus 299 ~~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~ 377 (845)
..+++.|+||+|..++|+-|+|.|-. +.-|+-|+ -..+|.+|||++||||||||+||||+|.|++..||.|+.+.+.+
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~-GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS 283 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFK-GIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS 283 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHh-hcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhh
Confidence 47889999999999999999998877 66676554 45778899999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCc---EEEEEEcC
Q 043051 378 MFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQ---VLVIGATN 454 (845)
Q Consensus 378 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~---ViVIaaTN 454 (845)
+|.|.+++.||-+|+.|+.++|++|||||||+|+.+|++. +.|......-..||.+|||....... |+|+||||
T Consensus 284 KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s---~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN 360 (491)
T KOG0738|consen 284 KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS---SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATN 360 (491)
T ss_pred hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc---cchhHHHHHHHHHHHHhhccccccccceeEEEEeccC
Confidence 9999999999999999999999999999999999999743 45666677788999999998876555 99999999
Q ss_pred CCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Q 043051 455 RLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTAR 534 (845)
Q Consensus 455 ~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r 534 (845)
.|+.||.||+| ||...|+||+|+.++|..+|+..++..... ++++++.||..++||||+||.++|++|++.+.|
T Consensus 361 ~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~----~~~~~~~lae~~eGySGaDI~nvCreAsm~~mR 434 (491)
T KOG0738|consen 361 FPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELD----DPVNLEDLAERSEGYSGADITNVCREASMMAMR 434 (491)
T ss_pred CCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCC----CCccHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999987776 788999999999999999999999999999988
Q ss_pred cCC-----------------CccCHHHHHHHHHhcc
Q 043051 535 KDL-----------------DYIGQEELLEALKRQK 553 (845)
Q Consensus 535 ~~~-----------------~~It~edl~~Al~r~k 553 (845)
+-. ..|+++||+.|+.+++
T Consensus 435 R~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~ 470 (491)
T KOG0738|consen 435 RKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVR 470 (491)
T ss_pred HHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcC
Confidence 521 2488899999999884
No 20
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=3.5e-40 Score=371.09 Aligned_cols=248 Identities=39% Similarity=0.615 Sum_probs=230.3
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH
Q 043051 299 ETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE 377 (845)
Q Consensus 299 ~~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~ 377 (845)
+.+.++|+||+|.+.+|++|++.+.. +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+.++++..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 37889999999999999999999875 89999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCC
Q 043051 378 MFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLD 457 (845)
Q Consensus 378 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd 457 (845)
+|+|.+...++++|..|+..+||||||||||.++.+|.+. ..+.+.+.+..+.++|.++|++....+ ++||+|||+++
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~-~~~~d~~~~r~l~~LL~~ld~~~~~~~-v~VI~aTN~~d 295 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDA-QTGADREVQRILLELLNQMDGFDQTTN-VKVIMATNRAD 295 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccc-cCCccHHHHHHHHHHHHHhhccCCCCC-EEEEEecCCch
Confidence 9999999999999999999999999999999999887532 233456677889999999999875544 99999999999
Q ss_pred CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCC
Q 043051 458 ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDL 537 (845)
Q Consensus 458 ~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~ 537 (845)
.|||+++||||||+.|+|+.|+.++|.+||+.++.+.++. .+.++..+|..|+||||+||.++|++|++.|.+++.
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~----~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~ 371 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS----EEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNR 371 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC----cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999887765 678899999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHhc
Q 043051 538 DYIGQEELLEALKRQ 552 (845)
Q Consensus 538 ~~It~edl~~Al~r~ 552 (845)
..|+++||.+|+.++
T Consensus 372 ~~i~~~df~~A~~~v 386 (398)
T PTZ00454 372 YVILPKDFEKGYKTV 386 (398)
T ss_pred CccCHHHHHHHHHHH
Confidence 999999999999998
No 21
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=4.6e-39 Score=362.42 Aligned_cols=248 Identities=49% Similarity=0.780 Sum_probs=229.5
Q ss_pred CCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHh
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM 378 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~ 378 (845)
.+.++|+||+|.++++++|.+.+.. +.+++.|..+|..+|+|+|||||||||||++|+++|++++.+|+.++++++...
T Consensus 125 ~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~ 204 (389)
T PRK03992 125 SPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 204 (389)
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh
Confidence 6789999999999999999998877 889999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCC
Q 043051 379 FVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDI 458 (845)
Q Consensus 379 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~ 458 (845)
|.|.+...++.+|+.|+.++||||||||||.++..|+... ..++.+.+.++++++.+++++.... +++||+|||+++.
T Consensus 205 ~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~-~~~~~~~~~~l~~lL~~ld~~~~~~-~v~VI~aTn~~~~ 282 (389)
T PRK03992 205 FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSG-TSGDREVQRTLMQLLAEMDGFDPRG-NVKIIAATNRIDI 282 (389)
T ss_pred hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCC-CCccHHHHHHHHHHHHhccccCCCC-CEEEEEecCChhh
Confidence 9999999999999999999999999999999998876332 3345677889999999999886544 5999999999999
Q ss_pred CChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCC
Q 043051 459 LDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDLD 538 (845)
Q Consensus 459 LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~~ 538 (845)
+|++++||||||+.|.|++|+.++|.+||+.++++..+. .+.++..+|..|.||+|+||.++|++|++.|.+++..
T Consensus 283 ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~----~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~ 358 (389)
T PRK03992 283 LDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA----DDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRT 358 (389)
T ss_pred CCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC----CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999877665 4678999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHhcc
Q 043051 539 YIGQEELLEALKRQK 553 (845)
Q Consensus 539 ~It~edl~~Al~r~k 553 (845)
.|+.+||.+|++++.
T Consensus 359 ~i~~~d~~~A~~~~~ 373 (389)
T PRK03992 359 EVTMEDFLKAIEKVM 373 (389)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999999994
No 22
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=5.6e-39 Score=363.92 Aligned_cols=249 Identities=37% Similarity=0.632 Sum_probs=231.3
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHH
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFV 376 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~ 376 (845)
++.+..+|+||.|++..++++.+.+.. +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 346789999999999999999999976 8999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCC
Q 043051 377 EMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRL 456 (845)
Q Consensus 377 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~p 456 (845)
..|.|.+...++.+|..|+...||||||||||.++.+|.. ...++..+.+.+++++|.++|++.... ++.||+|||++
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~-~~sgg~~e~qr~ll~LL~~Ldg~~~~~-~V~VI~ATNr~ 332 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYD-ATSGGEKEIQRTMLELLNQLDGFDSRG-DVKVIMATNRI 332 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCC-CCCcccHHHHHHHHHHHHHHhhhcccC-CeEEEEecCCh
Confidence 9999999999999999999999999999999999988763 333556677889999999999986544 49999999999
Q ss_pred CCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcC
Q 043051 457 DILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKD 536 (845)
Q Consensus 457 d~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~ 536 (845)
+.||++++||||||+.|.|+.|+.++|.+||+.++.+..+. .++++..++..+.||||+||.++|++|++.|.+++
T Consensus 333 d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~----~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~ 408 (438)
T PTZ00361 333 ESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA----EDVDLEEFIMAKDELSGADIKAICTEAGLLALRER 408 (438)
T ss_pred HHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC----cCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999887665 57889999999999999999999999999999999
Q ss_pred CCccCHHHHHHHHHhc
Q 043051 537 LDYIGQEELLEALKRQ 552 (845)
Q Consensus 537 ~~~It~edl~~Al~r~ 552 (845)
+..|+.+||..|++++
T Consensus 409 r~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 409 RMKVTQADFRKAKEKV 424 (438)
T ss_pred CCccCHHHHHHHHHHH
Confidence 9999999999999998
No 23
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-38 Score=363.36 Aligned_cols=249 Identities=45% Similarity=0.701 Sum_probs=228.4
Q ss_pred CCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHh
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM 378 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~ 378 (845)
.+.++|.|+.|.+.+|+.+.+.+.+ ++.++.|...|.++|+|+|||||||||||+||+|+|.+++.+|+.+.++++.++
T Consensus 236 ~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk 315 (494)
T COG0464 236 DEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK 315 (494)
T ss_pred CCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc
Confidence 6789999999999999999999998 788999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCC
Q 043051 379 FVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDI 458 (845)
Q Consensus 379 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~ 458 (845)
|+|.++++++.+|..|++.+||||||||+|+++..|+.... ......++++|.+|||.....+ |+||+|||+|+.
T Consensus 316 ~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~----~~~~r~~~~lL~~~d~~e~~~~-v~vi~aTN~p~~ 390 (494)
T COG0464 316 WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSED----GSGRRVVGQLLTELDGIEKAEG-VLVIAATNRPDD 390 (494)
T ss_pred ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCc----hHHHHHHHHHHHHhcCCCccCc-eEEEecCCCccc
Confidence 99999999999999999999999999999999998863321 2226789999999999887666 999999999999
Q ss_pred CChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcC-C
Q 043051 459 LDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKD-L 537 (845)
Q Consensus 459 LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~-~ 537 (845)
+|++++||||||+.++|++||..+|.+||+.+++..... ...+.+++.+++.|.||+|+||..+|.+|++.+.++. .
T Consensus 391 ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~--~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~ 468 (494)
T COG0464 391 LDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPP--LAEDVDLEELAEITEGYSGADIAALVREAALEALREARR 468 (494)
T ss_pred cCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCc--chhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999854432 1267899999999999999999999999999999988 6
Q ss_pred CccCHHHHHHHHHhcccc
Q 043051 538 DYIGQEELLEALKRQKGT 555 (845)
Q Consensus 538 ~~It~edl~~Al~r~k~~ 555 (845)
..|+++||.+|+.+.+++
T Consensus 469 ~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 469 REVTLDDFLDALKKIKPS 486 (494)
T ss_pred CCccHHHHHHHHHhcCCC
Confidence 789999999999997544
No 24
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-38 Score=357.76 Aligned_cols=243 Identities=37% Similarity=0.590 Sum_probs=217.7
Q ss_pred hhccccccccccccccCCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 043051 284 LGSLGKSRAKFISAEETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 284 ~~~~~~s~a~~~~~~~~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~e 362 (845)
+..|-+...+-+.-.+.++..|+||.|+.++|+.|.+++.+ -+.|..|.+.+.+.+.|||||||||||||+||.|+|..
T Consensus 645 L~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~ 724 (952)
T KOG0735|consen 645 LKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASN 724 (952)
T ss_pred HHhcChHHhhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhh
Confidence 33344433333333346679999999999999999999999 67899999999999999999999999999999999999
Q ss_pred cCCCeEEeechhHHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcc
Q 043051 363 AGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKV 442 (845)
Q Consensus 363 lg~pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~ 442 (845)
+++.|+++.|.++.++|.|.++..+|++|+.|+..+|||||+||+|.++++||.+..+ .....+||+|++|||.+.
T Consensus 725 ~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTG----VTDRVVNQlLTelDG~Eg 800 (952)
T KOG0735|consen 725 SNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTG----VTDRVVNQLLTELDGAEG 800 (952)
T ss_pred CCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCC----chHHHHHHHHHhhccccc
Confidence 9999999999999999999999999999999999999999999999999999854322 235679999999999987
Q ss_pred cCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHH
Q 043051 443 STSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQ 522 (845)
Q Consensus 443 ~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~ 522 (845)
-.+ |.|+|||.||+.|||||+||||+|+.+.-+.|+..+|.+||+......... .++|++.+|..|+||||+||.
T Consensus 801 l~G-V~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~----~~vdl~~~a~~T~g~tgADlq 875 (952)
T KOG0735|consen 801 LDG-VYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD----TDVDLECLAQKTDGFTGADLQ 875 (952)
T ss_pred cce-EEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc----cccchHHHhhhcCCCchhhHH
Confidence 666 999999999999999999999999999999999999999999998877666 789999999999999999999
Q ss_pred HHHHHHHHHHHHc
Q 043051 523 NILNEAGILTARK 535 (845)
Q Consensus 523 ~LvneAal~A~r~ 535 (845)
.++..|.+.|..+
T Consensus 876 ~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 876 SLLYNAQLAAVHE 888 (952)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888654
No 25
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-38 Score=333.21 Aligned_cols=227 Identities=36% Similarity=0.530 Sum_probs=206.4
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH
Q 043051 299 ETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE 377 (845)
Q Consensus 299 ~~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~ 377 (845)
+.|++.|+||+|.+.+|+.|++.|.. ++.|+.|.. +.+|.+|+||||||||||++||+|+|.|++..|++++.|++++
T Consensus 126 EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvS 204 (439)
T KOG0739|consen 126 EKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 204 (439)
T ss_pred cCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHH
Confidence 37899999999999999999998876 788887743 4567899999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCC
Q 043051 378 MFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLD 457 (845)
Q Consensus 378 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd 457 (845)
+|+|.+++.|+.+|+.|+.+.|+||||||||.+++.|+.+ .+......-..+|.+|.|...+...|+|++|||-|+
T Consensus 205 KWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en----EseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw 280 (439)
T KOG0739|consen 205 KWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN----ESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPW 280 (439)
T ss_pred HHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC----chHHHHHHHHHHHHhhhccccCCCceEEEecCCCch
Confidence 9999999999999999999999999999999999888632 344555667789999999988888899999999999
Q ss_pred CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHc
Q 043051 458 ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARK 535 (845)
Q Consensus 458 ~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~ 535 (845)
.||.|++| ||++.|+||+|+...|..+|+.|+...+..+ .+.++..|++.|+||||+||.-+++.|.+...|+
T Consensus 281 ~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~L---T~~d~~eL~~kTeGySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 281 VLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVL---TEQDFKELARKTEGYSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred hHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCcccc---chhhHHHHHhhcCCCCcCceEEEehhhhhhhHHH
Confidence 99999999 9999999999999999999999998877665 6788999999999999999999999998777664
No 26
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.6e-37 Score=375.52 Aligned_cols=247 Identities=45% Similarity=0.706 Sum_probs=224.9
Q ss_pred CCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHh
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM 378 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~ 378 (845)
.+.++|+||+|++.+|+.|.+.+.+ +++++.|.++|.++|+|+|||||||||||++|+++|++++.+|+.++++++.++
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 5688999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCC
Q 043051 379 FVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDI 458 (845)
Q Consensus 379 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~ 458 (845)
|+|.++..++.+|..|+..+||||||||||+++..|+... .+......++++|.+|||+.... +++||+|||+|+.
T Consensus 527 ~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~---~~~~~~~~~~~lL~~ldg~~~~~-~v~vI~aTn~~~~ 602 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF---DTSVTDRIVNQLLTEMDGIQELS-NVVVIAATNRPDI 602 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC---CccHHHHHHHHHHHHhhcccCCC-CEEEEEeCCChhh
Confidence 9999999999999999999999999999999998876321 23345678899999999987554 4999999999999
Q ss_pred CChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcC--
Q 043051 459 LDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKD-- 536 (845)
Q Consensus 459 LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~-- 536 (845)
||++++||||||+.|++++|+.++|.+||+.+.++.++. .++++..+|..|.||||+||.++|++|++.|.++.
T Consensus 603 ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~----~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~ 678 (733)
T TIGR01243 603 LDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLA----EDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIG 678 (733)
T ss_pred CCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCC----ccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999887765 67889999999999999999999999999888742
Q ss_pred ----------------CCccCHHHHHHHHHhccc
Q 043051 537 ----------------LDYIGQEELLEALKRQKG 554 (845)
Q Consensus 537 ----------------~~~It~edl~~Al~r~k~ 554 (845)
...|+++||.+|+.++++
T Consensus 679 ~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~p 712 (733)
T TIGR01243 679 SPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKP 712 (733)
T ss_pred hccchhhhcccccccccCcccHHHHHHHHHHcCC
Confidence 126999999999999843
No 27
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=100.00 E-value=2.5e-37 Score=321.50 Aligned_cols=191 Identities=30% Similarity=0.411 Sum_probs=162.0
Q ss_pred CHHHHHHHHHhcccccccCCCC-CCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCceeeeecccccCC---CCc---ccc
Q 043051 541 GQEELLEALKRQKGTFETGQED-STDIPEELKLRLAYREAAVAVLACHLPDPYRPIIETDIKSIRSQP---NMR---YAE 613 (845)
Q Consensus 541 t~edl~~Al~r~k~~~~~g~e~-~~~ls~~ek~~iA~hEaGhAlv~~~l~~~~~p~~kvtI~~i~~~p---alg---~~p 613 (845)
|++||.+|++++ ..|.++ ...+++++++++|+|||||||++++++..+ |+.++|| +| ++| +.|
T Consensus 1 ~~~d~~~a~drv----~~G~~~~~~~~~~~~~~~~A~HEAGhAvva~~l~~~~-~v~~vsi-----~prg~~~G~~~~~~ 70 (213)
T PF01434_consen 1 TMEDIEEAIDRV----LMGPEKKSRKLSEEEKRRIAYHEAGHAVVAYLLPPAD-PVSKVSI-----VPRGSALGFTQFTP 70 (213)
T ss_dssp -HHHHHHHHHHH----HCCSCCTTS---HHHHHHHHHHHHHHHHHHHHSSS----EEEEES-----STTCCCCHCCEECH
T ss_pred CHHHHHHHHHHH----hcCcCcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccc-cEEEEEE-----ecCCCcceeEEecc
Confidence 689999999999 999998 678999999999999999999999999877 9999999 66 566 568
Q ss_pred ccccccCCHHHHHHHHHHhhchhHHHHHhhCCccccccccchHHHHHHHHHHHHHHhccCC-cccccccc-CC-Cccc--
Q 043051 614 ISGRVFSRKNDYLNAIVRACAPRVIEEQMFGIDNMCWISSKATLDASRLAEFLILQTGMTA-FGKAYYRN-QS-DLVP-- 688 (845)
Q Consensus 614 ~~d~~~~tk~~l~~~I~v~LgGRaAEelvfG~~~vttGAs~Dl~~AT~lA~~mV~~~GMs~-~G~~~~~~-~~-~~~~-- 688 (845)
.++++..||.+|+++|+++|||||||+++||.+++|||+++||.+||+||+.||..|||++ +|++.|.. .. ..++
T Consensus 71 ~~~~~~~t~~~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~iA~~mv~~~Gm~~~~g~~~~~~~~~~~~~~~~ 150 (213)
T PF01434_consen 71 DEDRYIRTRSYLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEIARKMVASYGMGDSLGLLSYSPNDDDEVFLGR 150 (213)
T ss_dssp HTT-SS-BHHHHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHHHHHHHHTST-TTTTTSS-SEEEE-S-SSS-E
T ss_pred chhcccccHHHHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHHHHHHHHHhCCCCCCceeeeeccccccccccc
Confidence 7888889999999999999999999999999777799999999999999999999999999 99998832 22 2222
Q ss_pred ------cchHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHH
Q 043051 689 ------NLATKLEALRDEYMRFAVE----KCASVLREYHSAVETITDILLEKGEIKAEEIWDI 741 (845)
Q Consensus 689 ------~~s~~~~~~iD~ev~~l~~----~a~~lL~~~r~~Le~LA~~LLekEtL~~~ei~~i 741 (845)
.+|+++...+|++|+++++ +|+++|++||+.|++||++||++|+|+++||++|
T Consensus 151 ~~~~~~~~s~~~~~~i~~ev~~lL~~a~~~a~~iL~~~r~~l~~la~~Lle~~~L~~~ei~~I 213 (213)
T PF01434_consen 151 EWNSRRPMSEETRALIDREVRKLLEEAYARAKEILEENREALEALAEALLEKETLSGEEIEEI 213 (213)
T ss_dssp ---EEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHH
T ss_pred cccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHhhC
Confidence 3899999999999998887 9999999999999999999999999999999986
No 28
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-38 Score=332.27 Aligned_cols=248 Identities=40% Similarity=0.695 Sum_probs=231.3
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH
Q 043051 299 ETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE 377 (845)
Q Consensus 299 ~~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~ 377 (845)
....++|+++.|.-.+..++++.+.. +.+|+.|.+.|+++|+|++||||||||||++|+++|..+|+.|+.++.+.+++
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD 204 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh
Confidence 35678999999999999999998877 89999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCC
Q 043051 378 MFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLD 457 (845)
Q Consensus 378 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd 457 (845)
.+.|.++..+|+.|..|+...|||||+||||++++.|. ++....+.+.+.||..|+.+||||.... +|-+|+|||+|+
T Consensus 205 kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~-se~Ts~dreiqrTLMeLlnqmdgfd~l~-rVk~ImatNrpd 282 (388)
T KOG0651|consen 205 KYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRF-SEGTSSDREIQRTLMELLNQMDGFDTLH-RVKTIMATNRPD 282 (388)
T ss_pred hhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEe-ccccchhHHHHHHHHHHHHhhccchhcc-cccEEEecCCcc
Confidence 99999999999999999999999999999999999884 4555668899999999999999998654 499999999999
Q ss_pred CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCC
Q 043051 458 ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDL 537 (845)
Q Consensus 458 ~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~ 537 (845)
.|||+|+||||+|+.+.+|+|+...|..|++.|....... ...+.+.+.+..+||.|+|+++.|.||.+.|.+...
T Consensus 283 tLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~----Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~ 358 (388)
T KOG0651|consen 283 TLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFH----GEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEER 358 (388)
T ss_pred ccchhhcCCccccceeccCCcchhhceeeEeecccccccc----ccccHHHHHHHHhccChHHHhhhcccccccccchhh
Confidence 9999999999999999999999999999999998765544 456788999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHhc
Q 043051 538 DYIGQEELLEALKRQ 552 (845)
Q Consensus 538 ~~It~edl~~Al~r~ 552 (845)
..+-++++..++.++
T Consensus 359 ~~vl~Ed~~k~vrk~ 373 (388)
T KOG0651|consen 359 DEVLHEDFMKLVRKQ 373 (388)
T ss_pred HHHhHHHHHHHHHHH
Confidence 999999999999887
No 29
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-37 Score=332.40 Aligned_cols=227 Identities=40% Similarity=0.608 Sum_probs=209.1
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcC-CCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHH
Q 043051 299 ETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKG-IYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFV 376 (845)
Q Consensus 299 ~~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g-~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~ 376 (845)
....++|+|+.|.++++++|++.|-. ++.|+.|..-+ .++|+|||||||||||||++|+|+|+++|.+|+.++++.+.
T Consensus 85 ~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt 164 (386)
T KOG0737|consen 85 SEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLT 164 (386)
T ss_pred hhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccc
Confidence 36789999999999999999998887 88999886333 57899999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCC-cEEEEEEcCC
Q 043051 377 EMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTS-QVLVIGATNR 455 (845)
Q Consensus 377 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~-~ViVIaaTN~ 455 (845)
++|.|.+.+.++.+|..|.+.+||||||||+|.+.+.|+ .+.|......=++++..+||+....+ +|+|+||||+
T Consensus 165 ~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~----s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNR 240 (386)
T KOG0737|consen 165 SKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR----STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNR 240 (386)
T ss_pred hhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc----cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCC
Confidence 999999999999999999999999999999999999884 23466666677889999999987665 7999999999
Q ss_pred CCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHc
Q 043051 456 LDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARK 535 (845)
Q Consensus 456 pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~ 535 (845)
|..||.|++| |+.++++|+.|+..+|.+||++.+++..++ +++|+..+|..|.||||.||.++|..|++...+.
T Consensus 241 P~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e----~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737|consen 241 PFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLE----DDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRE 314 (386)
T ss_pred CccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccC----cccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHH
Confidence 9999999999 999999999999999999999999998887 7899999999999999999999999999888764
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=2.1e-36 Score=338.20 Aligned_cols=247 Identities=47% Similarity=0.762 Sum_probs=226.8
Q ss_pred CCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHh
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM 378 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~ 378 (845)
.+.++|+||+|.++++++|.+.+.. +.+++.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+.++++...
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~ 195 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRK 195 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHH
Confidence 6789999999999999999998876 789999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCC
Q 043051 379 FVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDI 458 (845)
Q Consensus 379 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~ 458 (845)
+.|.+...++.+|..++...|+||||||+|.++.+|... ..++..+.+.++.+++.+++++.... ++.||+|||+++.
T Consensus 196 ~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~-~~~~~~~~~~~l~~ll~~ld~~~~~~-~v~vI~ttn~~~~ 273 (364)
T TIGR01242 196 YIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDS-GTSGDREVQRTLMQLLAELDGFDPRG-NVKVIAATNRPDI 273 (364)
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccC-CCCccHHHHHHHHHHHHHhhCCCCCC-CEEEEEecCChhh
Confidence 999999999999999999999999999999998877532 33445667888999999999876444 5999999999999
Q ss_pred CChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCC
Q 043051 459 LDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDLD 538 (845)
Q Consensus 459 LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~~ 538 (845)
+|++++||||||+.|.|+.|+.++|.+||+.++....+. .+.++..+++.|.||+|+||.++|++|++.|.+++..
T Consensus 274 ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~----~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~ 349 (364)
T TIGR01242 274 LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA----EDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERD 349 (364)
T ss_pred CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC----ccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999998776655 4577999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHhc
Q 043051 539 YIGQEELLEALKRQ 552 (845)
Q Consensus 539 ~It~edl~~Al~r~ 552 (845)
.|+.+||.+|++++
T Consensus 350 ~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 350 YVTMDDFIKAVEKV 363 (364)
T ss_pred ccCHHHHHHHHHHh
Confidence 99999999999875
No 31
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.2e-36 Score=349.47 Aligned_cols=244 Identities=29% Similarity=0.451 Sum_probs=211.4
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhh
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMF 379 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~ 379 (845)
.+..+|+||+|.+.+|+.|.+....+ +..+...|.++|+|+|||||||||||++|+++|++++.||+.++++.+.+++
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 45789999999999999998765433 3455678999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCC
Q 043051 380 VGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDIL 459 (845)
Q Consensus 380 vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~L 459 (845)
+|.++.+++.+|..|+..+||||||||||.++.++... +.+......+.+++..|+. ...+|+||+|||+++.|
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~---~d~~~~~rvl~~lL~~l~~---~~~~V~vIaTTN~~~~L 373 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK---GDSGTTNRVLATFITWLSE---KKSPVFVVATANNIDLL 373 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC---CCchHHHHHHHHHHHHHhc---CCCceEEEEecCChhhC
Confidence 99999999999999999999999999999998754322 2233455667777777764 34569999999999999
Q ss_pred ChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCCc
Q 043051 460 DPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDLDY 539 (845)
Q Consensus 460 DpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~~~ 539 (845)
|++++|+||||+.++|+.|+.++|.+||+.|+.+.... ...+.++..+|+.|.||||+||.++|++|+..|...+ ..
T Consensus 374 d~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~--~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-~~ 450 (489)
T CHL00195 374 PLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPK--SWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-RE 450 (489)
T ss_pred CHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCC--cccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-CC
Confidence 99999999999999999999999999999999875432 1136789999999999999999999999999888776 56
Q ss_pred cCHHHHHHHHHhccc
Q 043051 540 IGQEELLEALKRQKG 554 (845)
Q Consensus 540 It~edl~~Al~r~k~ 554 (845)
++.+||..|+.+..+
T Consensus 451 lt~~dl~~a~~~~~P 465 (489)
T CHL00195 451 FTTDDILLALKQFIP 465 (489)
T ss_pred cCHHHHHHHHHhcCC
Confidence 999999999999843
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=3.1e-33 Score=321.18 Aligned_cols=251 Identities=30% Similarity=0.515 Sum_probs=206.4
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC----------
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVP---------- 366 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~p---------- 366 (845)
++.+.++|+||+|.+..++++++.+.. +.+++.|...|.++|+|+|||||||||||++|+++|++++.+
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 457899999999999999999998876 789999999999999999999999999999999999998654
Q ss_pred eEEeechhHHHhhhhhhhhhHHHHHHHHHhc----CCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcc
Q 043051 367 FFAANGTDFVEMFVGVAASRVKDLFASARSF----APSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKV 442 (845)
Q Consensus 367 fi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~ 442 (845)
|+.++++++..+|+|.++..++.+|+.|+.. .||||||||+|.++++|+.. ..++.....++++|..||++..
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~---~s~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSG---VSSDVETTVVPQLLSELDGVES 330 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCC---ccchHHHHHHHHHHHHhccccc
Confidence 6678888999999999999999999999764 69999999999999887532 1233335567899999999875
Q ss_pred cCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhh-cccch-----hhhhhHHHHHHH-----
Q 043051 443 STSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNK-YFRSE-----EEKDVLLQEIAE----- 511 (845)
Q Consensus 443 ~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~-~l~~~-----~~~d~dl~~LA~----- 511 (845)
.. +++||+|||+++.|||||+||||||+.|+|++|+.++|.+||+.++... ++... .....++..++.
T Consensus 331 ~~-~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~ 409 (512)
T TIGR03689 331 LD-NVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDH 409 (512)
T ss_pred CC-ceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 44 5999999999999999999999999999999999999999999998642 22100 001112222221
Q ss_pred ------------------------HccCCcHHHHHHHHHHHHHHHHHc----CCCccCHHHHHHHHHhc
Q 043051 512 ------------------------LTEDFTGAELQNILNEAGILTARK----DLDYIGQEELLEALKRQ 552 (845)
Q Consensus 512 ------------------------~t~GfSgaDL~~LvneAal~A~r~----~~~~It~edl~~Al~r~ 552 (845)
.++.+||++|+++|.+|...|.++ +...|+.+|+..|+...
T Consensus 410 ~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e 478 (512)
T TIGR03689 410 LYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDE 478 (512)
T ss_pred HhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHh
Confidence 145678999999999998777755 34579999999999877
No 33
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-32 Score=310.39 Aligned_cols=278 Identities=38% Similarity=0.587 Sum_probs=236.1
Q ss_pred CCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhh
Q 043051 301 TGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMF 379 (845)
Q Consensus 301 ~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~ 379 (845)
.+++ .++.|.......+++++.+ +.++..|...|.++|+|+|+|||||||||.+++++|++.++.++.+++++++.++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5666 8999999999999999988 8899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHhcC-CcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCC
Q 043051 380 VGVAASRVKDLFASARSFA-PSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDI 458 (845)
Q Consensus 380 vG~~~~~vr~lF~~A~~~a-P~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~ 458 (845)
.|.+++.+|..|+.|.+++ |+||||||||+++++|.... ........|++.-|||... .++++||++||+|+.
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~-----~~e~Rv~sqlltL~dg~~~-~~~vivl~atnrp~s 332 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGAD-----DVESRVVSQLLTLLDGLKP-DAKVIVLAATNRPDS 332 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccc-----hHHHHHHHHHHHHHhhCcC-cCcEEEEEecCCccc
Confidence 9999999999999999999 99999999999999886321 1344567788888888763 455999999999999
Q ss_pred CChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCC
Q 043051 459 LDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDLD 538 (845)
Q Consensus 459 LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~~ 538 (845)
||++++| ||||+.+.+..|+..+|.+|++.+.++.++. .+.++..+|..|+||+|+||..+|++|++.+.++
T Consensus 333 ld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~----~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~--- 404 (693)
T KOG0730|consen 333 LDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLL----SDVDLEDIAVSTHGYVGADLAALCREASLQATRR--- 404 (693)
T ss_pred cChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCc----chhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh---
Confidence 9999999 9999999999999999999999999998876 6789999999999999999999999999999887
Q ss_pred ccCHHHHHHHHHhcccccccC----CCC--CCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCceeeee
Q 043051 539 YIGQEELLEALKRQKGTFETG----QED--STDIPEELKLRLAYREAAVAVLACHLPDPYRPIIETDI 600 (845)
Q Consensus 539 ~It~edl~~Al~r~k~~~~~g----~e~--~~~ls~~ek~~iA~hEaGhAlv~~~l~~~~~p~~kvtI 600 (845)
+++++..|+..+.++.... ..+ +.++..-+.-...+.+ .|.|-+.+++ .+.+..|
T Consensus 405 --~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~----~V~~p~~~pe-~F~r~Gi 465 (693)
T KOG0730|consen 405 --TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRELQQ----AVEWPLKHPE-KFARFGI 465 (693)
T ss_pred --hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHHHH----HHhhhhhchH-HHHHhcC
Confidence 8999999999887653221 111 2333322222222333 3566666666 6677777
No 34
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=6.5e-32 Score=299.25 Aligned_cols=286 Identities=31% Similarity=0.467 Sum_probs=225.3
Q ss_pred CCCCCcccc--cccHHHHHHHH-H-HHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC-CCeEEeechh
Q 043051 300 TTGVTFDDF--AGQEYIKRELQ-E-IVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAG-VPFFAANGTD 374 (845)
Q Consensus 300 ~~~~tF~dV--vG~de~k~eL~-e-iv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg-~pfi~vs~sd 374 (845)
.|...|+++ .|.+.--..+- + +...+--|+...++|++--+|+|||||||||||++||.|..-++ .+--.++|.+
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 466778774 56664333332 1 23334567777899999999999999999999999999999885 4667789999
Q ss_pred HHHhhhhhhhhhHHHHHHHHHhcC--------CcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCc
Q 043051 375 FVEMFVGVAASRVKDLFASARSFA--------PSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQ 446 (845)
Q Consensus 375 f~~~~vG~~~~~vr~lF~~A~~~a--------P~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ 446 (845)
+.++|+|.++.+||.+|..|.... =-||++||||+++++|++. +++.....+.+||||..|||.+.-.+
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~--~g~TGVhD~VVNQLLsKmDGVeqLNN- 369 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSM--AGSTGVHDTVVNQLLSKMDGVEQLNN- 369 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCC--CCCCCccHHHHHHHHHhcccHHhhhc-
Confidence 999999999999999999994311 2499999999999999853 33344556889999999999876555
Q ss_pred EEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHH
Q 043051 447 VLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILN 526 (845)
Q Consensus 447 ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~Lvn 526 (845)
|+||+-|||.|.+|.||+|||||.-++++.+||.++|.+||+.|.++..-..-...+++++.||++|.+|||++|..+++
T Consensus 370 ILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVk 449 (744)
T KOG0741|consen 370 ILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVK 449 (744)
T ss_pred EEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999977654333447899999999999999999999999
Q ss_pred HHHHHHHHcCC---------------CccCHHHHHHHHHhcccccccCCCC-----CCCchhHHHHHHHHHHHHHHHHHh
Q 043051 527 EAGILTARKDL---------------DYIGQEELLEALKRQKGTFETGQED-----STDIPEELKLRLAYREAAVAVLAC 586 (845)
Q Consensus 527 eAal~A~r~~~---------------~~It~edl~~Al~r~k~~~~~g~e~-----~~~ls~~ek~~iA~hEaGhAlv~~ 586 (845)
.|...|..+.. =.|+++||..|++.+++.|-...+. ...+-..-.......+-|.-+++.
T Consensus 450 sA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~q 529 (744)
T KOG0741|consen 450 SAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQ 529 (744)
T ss_pred HHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHH
Confidence 99887765422 1589999999999998876554333 111112223344455667777765
Q ss_pred hC
Q 043051 587 HL 588 (845)
Q Consensus 587 ~l 588 (845)
.-
T Consensus 530 vk 531 (744)
T KOG0741|consen 530 VK 531 (744)
T ss_pred hh
Confidence 43
No 35
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=2.4e-31 Score=290.08 Aligned_cols=263 Identities=16% Similarity=0.193 Sum_probs=191.3
Q ss_pred CCCCccccc-ccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhh
Q 043051 301 TGVTFDDFA-GQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMF 379 (845)
Q Consensus 301 ~~~tF~dVv-G~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~ 379 (845)
...+|+++. |.--.+.-+..++..+...- ....|+++|++++||||||||||++|+++|+++|++|+.++++++.++|
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~-l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNF-LALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhh-hhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 456788884 45555555544443322111 1236789999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHhc-----CCcEEEEcccchhccCCCCCCCCCCchHHHHH-HHHHHHhhcCC-----------cc
Q 043051 380 VGVAASRVKDLFASARSF-----APSIIFIDEIDAIGSKRGGPDIGGGGAEREQG-LLQILTEMDGF-----------KV 442 (845)
Q Consensus 380 vG~~~~~vr~lF~~A~~~-----aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~-L~qLL~emdg~-----------~~ 442 (845)
+|.+++.+|.+|..|+.. +||||||||||+++++|+..+ .....+. ..+||..||+. ..
T Consensus 189 vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~----~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~ 264 (413)
T PLN00020 189 AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQ----YTVNNQMVNGTLMNIADNPTNVSLGGDWREKE 264 (413)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCC----cchHHHHHHHHHHHHhcCCccccccccccccc
Confidence 999999999999999753 699999999999999886221 1112223 35677766652 12
Q ss_pred cCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccC----CcH
Q 043051 443 STSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTED----FTG 518 (845)
Q Consensus 443 ~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~G----fSg 518 (845)
...+|+||+|||+|+.|||+|+||||||+.+ ..|+.++|.+||+.+++..++. ..++..|+..++| |.|
T Consensus 265 ~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-----~~dv~~Lv~~f~gq~~Df~G 337 (413)
T PLN00020 265 EIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-----REDVVKLVDTFPGQPLDFFG 337 (413)
T ss_pred cCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-----HHHHHHHHHcCCCCCchhhh
Confidence 3456999999999999999999999999864 5899999999999999887654 5788899999887 678
Q ss_pred HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcccccccCCCCCCCchhHHHHHHHHHHHHHHHHHh
Q 043051 519 AELQNILNEAGILTARKDLDYIGQEELLEALKRQKGTFETGQEDSTDIPEELKLRLAYREAAVAVLAC 586 (845)
Q Consensus 519 aDL~~LvneAal~A~r~~~~~It~edl~~Al~r~k~~~~~g~e~~~~ls~~ek~~iA~hEaGhAlv~~ 586 (845)
+--..+..++...-.. .+..+.+...+-.- ..++ ..+....-..-.+-|+||.|+..
T Consensus 338 Alrar~yd~~v~~~i~----~~g~~~~~~~l~~~----~~~~---p~f~~~~~t~~~l~~~g~~l~~e 394 (413)
T PLN00020 338 ALRARVYDDEVRKWIA----EVGVENLGKKLVNS----KKGP---PTFEPPKMTLEKLLEYGNMLVRE 394 (413)
T ss_pred HHHHHHHHHHHHHHHH----HhhHHHHHHHHhcC----CCCC---CCCCCCCCCHHHHHHHHHHHHHH
Confidence 7777777766543322 23444444443322 1121 12222233345677889988764
No 36
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.4e-31 Score=316.74 Aligned_cols=251 Identities=38% Similarity=0.583 Sum_probs=219.7
Q ss_pred CCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeEEeech
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA-----GVPFFAANGT 373 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el-----g~pfi~vs~s 373 (845)
...++|++|+|.+.++..|+|+|.+ |..|+.|..+++.+|+|||++||||||||+.|+|+|..+ .+.|+.-.++
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 5689999999999999999999988 889999999999999999999999999999999999877 4789999999
Q ss_pred hHHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEc
Q 043051 374 DFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGAT 453 (845)
Q Consensus 374 df~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaT 453 (845)
+..++|+|..+..++.+|+.|+++.|+|||+||||.|+..|+... .....+....+|.-|||+... +.|+||+||
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq----Eqih~SIvSTLLaLmdGldsR-gqVvvigAT 413 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ----EQIHASIVSTLLALMDGLDSR-GQVVVIGAT 413 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH----HHhhhhHHHHHHHhccCCCCC-CceEEEccc
Confidence 999999999999999999999999999999999999999886322 223334455666668887654 559999999
Q ss_pred CCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 043051 454 NRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTA 533 (845)
Q Consensus 454 N~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~ 533 (845)
|+|+.+||||+||||||+.++|++|+.+.|.+|+..|.++..-. .....+..+|..|.||.|+||+.+|.+|++.+.
T Consensus 414 nRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~---i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~ 490 (1080)
T KOG0732|consen 414 NRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPP---ISRELLLWLAEETSGYGGADLKALCTEAALIAL 490 (1080)
T ss_pred CCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCC---CCHHHHHHHHHhccccchHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999998876532 256778999999999999999999999999998
Q ss_pred HcCCC----------------ccCHHHHHHHHHhccccccc
Q 043051 534 RKDLD----------------YIGQEELLEALKRQKGTFET 558 (845)
Q Consensus 534 r~~~~----------------~It~edl~~Al~r~k~~~~~ 558 (845)
++.-. .|...||..|+.+..+....
T Consensus 491 ~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 491 RRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred ccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCc
Confidence 86431 47788999999888655444
No 37
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=1.2e-30 Score=315.78 Aligned_cols=248 Identities=45% Similarity=0.683 Sum_probs=217.8
Q ss_pred CCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHh
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM 378 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~ 378 (845)
.+.++|+||+|.+++++.+.+++.. +++|+.|..+|+.+|+|+|||||||||||++|+++|++++.+|+.++++++...
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 4679999999999999999999887 889999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCC
Q 043051 379 FVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDI 458 (845)
Q Consensus 379 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~ 458 (845)
+.|.+..+++.+|+.|....|+||||||||.++.+|+.. ........+.+++..|+++... +.++||++||+++.
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~----~~~~~~~~~~~Ll~~ld~l~~~-~~vivI~atn~~~~ 326 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV----TGEVEKRVVAQLLTLMDGLKGR-GRVIVIGATNRPDA 326 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCC----cchHHHHHHHHHHHHhhccccC-CCEEEEeecCChhh
Confidence 999999999999999999999999999999998876521 1122234567777778877543 45999999999999
Q ss_pred CChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcC--
Q 043051 459 LDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKD-- 536 (845)
Q Consensus 459 LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~-- 536 (845)
||++++|+|||++.+.++.|+.++|.+||+.+.+...+. .+.++..++..|.||+|+|+..++++|+..+.++.
T Consensus 327 ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~----~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~ 402 (733)
T TIGR01243 327 LDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLA----EDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIR 402 (733)
T ss_pred cCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCc----cccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999988776654 56779999999999999999999999998877642
Q ss_pred -----------------CCccCHHHHHHHHHhccccc
Q 043051 537 -----------------LDYIGQEELLEALKRQKGTF 556 (845)
Q Consensus 537 -----------------~~~It~edl~~Al~r~k~~~ 556 (845)
...++.+|+..|+..+.+..
T Consensus 403 ~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~ 439 (733)
T TIGR01243 403 EGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSA 439 (733)
T ss_pred ccccccccccccchhcccccccHHHHHHHHhhccccc
Confidence 12478899999999886553
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.6e-30 Score=284.34 Aligned_cols=248 Identities=35% Similarity=0.494 Sum_probs=210.8
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH
Q 043051 299 ETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE 377 (845)
Q Consensus 299 ~~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~ 377 (845)
..+.+.|+|++|.+.+|+.+.+.+.+ +..+..|..+ ..+++|+||.||||||||+|++|||.|++..|+.++++.+.+
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 35679999999999999999999988 4558877654 335789999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCccc-CCcEEEEEEcCCC
Q 043051 378 MFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVS-TSQVLVIGATNRL 456 (845)
Q Consensus 378 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~-~~~ViVIaaTN~p 456 (845)
+|+|.++..+|.+|.-|+...|+|+||||||.+..+|.... ++.......++|..+++.... ..+|+||+|||+|
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e----~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P 300 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNE----HESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRP 300 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcc----cccchhhhhHHHhhhccccCCCCCeEEEEecCCCc
Confidence 99999999999999999999999999999999999985332 333345556677777776543 3479999999999
Q ss_pred CCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcC
Q 043051 457 DILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKD 536 (845)
Q Consensus 457 d~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~ 536 (845)
+.+|.+++| ||.+.++|++|+.+.|..+++.++...+... .+.++..+++.|+||+|.||.++|.+|++--.+..
T Consensus 301 ~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l---~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~ 375 (428)
T KOG0740|consen 301 WELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGL---SDLDISLLAKVTEGYSGSDITALCKEAAMGPLREL 375 (428)
T ss_pred hHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCc---cHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhc
Confidence 999999999 9999999999999999999999998764332 67889999999999999999999999986544332
Q ss_pred -------------CCccCHHHHHHHHHhccccc
Q 043051 537 -------------LDYIGQEELLEALKRQKGTF 556 (845)
Q Consensus 537 -------------~~~It~edl~~Al~r~k~~~ 556 (845)
...++..|+..++..+++..
T Consensus 376 ~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~ 408 (428)
T KOG0740|consen 376 GGTTDLEFIDADKIRPITYPDFKNAFKNIKPSV 408 (428)
T ss_pred ccchhhhhcchhccCCCCcchHHHHHHhhcccc
Confidence 23577788888888775443
No 39
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.1e-24 Score=232.61 Aligned_cols=293 Identities=22% Similarity=0.314 Sum_probs=205.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccCCCCCCCCcccchhh----hhhhhcccccccc-ccccccCCCCCcccccccHHHHH
Q 043051 242 LALAVGLYIWIDNIMRPIYAKLIPCDLGTPPQKTRQPLQ----RRALGSLGKSRAK-FISAEETTGVTFDDFAGQEYIKR 316 (845)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~----~~~~~~~~~s~a~-~~~~~~~~~~tF~dVvG~de~k~ 316 (845)
.++.+|+| -.+....+.++|+...+|+|+.......+ .+.++.+. +..+ .-......+-.|++|+.....+.
T Consensus 289 TaLAaGvY--Ttkeg~~V~w~yi~r~LGqPSLiREsSrg~~pw~gsls~~k-~~i~~~~~~s~~gk~pl~~ViL~psLe~ 365 (630)
T KOG0742|consen 289 TALAAGVY--TTKEGTLVTWRYIERRLGQPSLIRESSRGRFPWIGSLSALK-HPIQGSRSASSRGKDPLEGVILHPSLEK 365 (630)
T ss_pred HHHHhhhe--eccccchhHHHHHHHHcCCchhhhhhccccCCCcccHHHHh-chhhhhHhhhhcCCCCcCCeecCHHHHH
Confidence 44555554 35566666677777778888754322211 01111110 0000 00112234556999999999999
Q ss_pred HHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhhhhhhhhhHHHHHHHHHh
Q 043051 317 ELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARS 396 (845)
Q Consensus 317 eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~~ 396 (845)
.+..+.....|.+..+ .+-++||+|||||||||++||-||..+|..+-.+.|.|.. .....+...|+.+|++|++
T Consensus 366 Rie~lA~aTaNTK~h~----apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA-PlG~qaVTkiH~lFDWakk 440 (630)
T KOG0742|consen 366 RIEDLAIATANTKKHQ----APFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA-PLGAQAVTKIHKLFDWAKK 440 (630)
T ss_pred HHHHHHHHhccccccc----chhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc-ccchHHHHHHHHHHHHHhh
Confidence 9999887776655432 2457899999999999999999999999999999998853 3344567789999999988
Q ss_pred cCC-cEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEe
Q 043051 397 FAP-SIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRV 475 (845)
Q Consensus 397 ~aP-~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v 475 (845)
... -+|||||.|++...|.... .+.....+||.||-.-. ..+.+++++.+||+|..||.|+.. |||.+|+|
T Consensus 441 S~rGLllFIDEADAFLceRnkty---mSEaqRsaLNAlLfRTG---dqSrdivLvlAtNrpgdlDsAV~D--Ride~veF 512 (630)
T KOG0742|consen 441 SRRGLLLFIDEADAFLCERNKTY---MSEAQRSALNALLFRTG---DQSRDIVLVLATNRPGDLDSAVND--RIDEVVEF 512 (630)
T ss_pred cccceEEEehhhHHHHHHhchhh---hcHHHHHHHHHHHHHhc---ccccceEEEeccCCccchhHHHHh--hhhheeec
Confidence 654 4789999999999887443 35566788998886632 234569999999999999999998 99999999
Q ss_pred CCCCHhHHHHHHHHHHhhhcccch-----------------------hhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 043051 476 GLPSKDGRFAILKVHARNKYFRSE-----------------------EEKDVLLQEIAELTEDFTGAELQNILNEAGILT 532 (845)
Q Consensus 476 ~~Pd~eeR~eIL~~~l~~~~l~~~-----------------------~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A 532 (845)
++|..++|..+|..++.+.-.... .+.+..+...|+.|.||||++|..|+--....+
T Consensus 513 pLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~vQAav 592 (630)
T KOG0742|consen 513 PLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASVQAAV 592 (630)
T ss_pred CCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHHHHHH
Confidence 999999999999998876432110 123445788999999999999999985332222
Q ss_pred HHcCCCccCHHHHHHHHH
Q 043051 533 ARKDLDYIGQEELLEALK 550 (845)
Q Consensus 533 ~r~~~~~It~edl~~Al~ 550 (845)
.-...-.++..-|++.++
T Consensus 593 YgsedcvLd~~lf~e~v~ 610 (630)
T KOG0742|consen 593 YGSEDCVLDEALFDERVD 610 (630)
T ss_pred hcccchhhHHHHHHHHHH
Confidence 222222344444444443
No 40
>CHL00181 cbbX CbbX; Provisional
Probab=99.88 E-value=2.2e-21 Score=210.71 Aligned_cols=216 Identities=24% Similarity=0.314 Sum_probs=160.8
Q ss_pred cccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCC---ceEEEEcCCCChHHHHHHHHHHhc-------CCCeEEeechh
Q 043051 305 FDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCP---KGVLLHGPPGTGKTLLAKAIAGEA-------GVPFFAANGTD 374 (845)
Q Consensus 305 F~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~P---rgVLL~GPPGTGKT~LArALA~el-------g~pfi~vs~sd 374 (845)
+++++|++.+|+++.+++.++..+..+...|...| .++||+||||||||++|+++|+.+ ..+|+.+++++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 45899999999999999988777777777887654 358999999999999999999875 23799999999
Q ss_pred HHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcC
Q 043051 375 FVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATN 454 (845)
Q Consensus 375 f~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN 454 (845)
++..++|.++..++.+|+.|. ++||||||+|.+++.++.. ....+...+|.++ |+. ...+++||++++
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~~---~~~~e~~~~L~~~---me~---~~~~~~vI~ag~ 169 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNER---DYGSEAIEILLQV---MEN---QRDDLVVIFAGY 169 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCcc---chHHHHHHHHHHH---Hhc---CCCCEEEEEeCC
Confidence 999999988888888888874 4899999999996543211 1123444444444 432 234588888886
Q ss_pred CCC-----CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhh-HHHHHHHH--ccCCc-HHHHHHHH
Q 043051 455 RLD-----ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDV-LLQEIAEL--TEDFT-GAELQNIL 525 (845)
Q Consensus 455 ~pd-----~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~-dl~~LA~~--t~GfS-gaDL~~Lv 525 (845)
... .++|+|.+ ||+.+|.|+.|+.+++.+|+..++............. ....+.+. .+.|. ++++++++
T Consensus 170 ~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~v 247 (287)
T CHL00181 170 KDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNAL 247 (287)
T ss_pred cHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 432 24699999 9999999999999999999999998766554332222 22333332 23444 89999999
Q ss_pred HHHHHHHHH
Q 043051 526 NEAGILTAR 534 (845)
Q Consensus 526 neAal~A~r 534 (845)
..|....+.
T Consensus 248 e~~~~~~~~ 256 (287)
T CHL00181 248 DRARMRQAN 256 (287)
T ss_pred HHHHHHHHH
Confidence 888655443
No 41
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.87 E-value=8.8e-21 Score=203.17 Aligned_cols=212 Identities=19% Similarity=0.278 Sum_probs=157.7
Q ss_pred cccccccHHHHHHHHHHHHHhhCcHHHhhcCCCC---CceEEEEcCCCChHHHHHHHHHHhc-------CCCeEEeechh
Q 043051 305 FDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYC---PKGVLLHGPPGTGKTLLAKAIAGEA-------GVPFFAANGTD 374 (845)
Q Consensus 305 F~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~---PrgVLL~GPPGTGKT~LArALA~el-------g~pfi~vs~sd 374 (845)
+++++|++.+|+.+.+++.++.........|... +.++||+||||||||++|+++|+.+ ..+++.+++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 6789999999999999999976666656667653 3578999999999999999999874 24789999999
Q ss_pred HHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcC
Q 043051 375 FVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATN 454 (845)
Q Consensus 375 f~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN 454 (845)
+...++|.+...++++|+.|. ++||||||+|.|.+. +.+......+..++..|+.. .+++++|++++
T Consensus 85 l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~-------~~~~~~~~~i~~Ll~~~e~~---~~~~~vila~~ 151 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG-------GEKDFGKEAIDTLVKGMEDN---RNEFVLILAGY 151 (261)
T ss_pred hhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC-------CccchHHHHHHHHHHHHhcc---CCCEEEEecCC
Confidence 999999999999999998875 489999999999531 11122234455566666542 34467776664
Q ss_pred CCC-----CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHH-------c--cCCcHHH
Q 043051 455 RLD-----ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAEL-------T--EDFTGAE 520 (845)
Q Consensus 455 ~pd-----~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~-------t--~GfSgaD 520 (845)
..+ .++|+|.+ ||+..|.|+.++.+++.+|++.++.......++ ..+..++.. . ..-+++.
T Consensus 152 ~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~---~a~~~l~~~~~~~~~~~~~~~gn~R~ 226 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTE---EAKWKLREHLYKVDQLSSREFSNARY 226 (261)
T ss_pred cchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCH---HHHHHHHHHHHHHHhccCCCCchHHH
Confidence 433 36899998 999999999999999999999999876554322 223333221 1 1236788
Q ss_pred HHHHHHHHHHHHHH
Q 043051 521 LQNILNEAGILTAR 534 (845)
Q Consensus 521 L~~LvneAal~A~r 534 (845)
+.|++..|....+.
T Consensus 227 ~~n~~e~a~~~~~~ 240 (261)
T TIGR02881 227 VRNIIEKAIRRQAV 240 (261)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999887655543
No 42
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.86 E-value=7.8e-21 Score=206.15 Aligned_cols=212 Identities=22% Similarity=0.287 Sum_probs=160.1
Q ss_pred ccccccHHHHHHHHHHHHHhhCcHHHhhcCCCC---CceEEEEcCCCChHHHHHHHHHHhcC-------CCeEEeechhH
Q 043051 306 DDFAGQEYIKRELQEIVRILKNDEEFQNKGIYC---PKGVLLHGPPGTGKTLLAKAIAGEAG-------VPFFAANGTDF 375 (845)
Q Consensus 306 ~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~---PrgVLL~GPPGTGKT~LArALA~elg-------~pfi~vs~sdf 375 (845)
++++|++++|+++.+++.++..+..+.+.|... ..++||+||||||||++|+++|+.+. .+|+.++++++
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 368999999999999999988888888888764 34899999999999999999988762 37999999999
Q ss_pred HHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCC
Q 043051 376 VEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNR 455 (845)
Q Consensus 376 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~ 455 (845)
...+.|.+...++.+|+.|. +++|||||+|.+.+.+... ....+.++.|+++ |+. ...+++||++++.
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~~---~~~~~~~~~Ll~~---le~---~~~~~~vI~a~~~ 169 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNER---DYGQEAIEILLQV---MEN---QRDDLVVILAGYK 169 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCcc---chHHHHHHHHHHH---Hhc---CCCCEEEEEeCCc
Confidence 99999988888899998874 4899999999996433211 1123334444444 432 2345888888764
Q ss_pred C--CC---CChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHc------cC-CcHHHHHH
Q 043051 456 L--DI---LDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELT------ED-FTGAELQN 523 (845)
Q Consensus 456 p--d~---LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t------~G-fSgaDL~~ 523 (845)
. +. ++|+|.+ ||+..|.|+.++.+++.+|++.++.+....... .....++... +. -++++++|
T Consensus 170 ~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~---~a~~~L~~~l~~~~~~~~~GN~R~lrn 244 (284)
T TIGR02880 170 DRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSA---EAEEAFADYIALRRTQPHFANARSIRN 244 (284)
T ss_pred HHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCH---HHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 3 32 4899999 999999999999999999999999876544322 2233333321 11 15789999
Q ss_pred HHHHHHHHHHH
Q 043051 524 ILNEAGILTAR 534 (845)
Q Consensus 524 LvneAal~A~r 534 (845)
++..|....+.
T Consensus 245 ~ve~~~~~~~~ 255 (284)
T TIGR02880 245 AIDRARLRQAN 255 (284)
T ss_pred HHHHHHHHHHH
Confidence 99988765544
No 43
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=5.8e-21 Score=212.13 Aligned_cols=233 Identities=25% Similarity=0.324 Sum_probs=175.8
Q ss_pred CCCCCcccccccHHHHHHHHH-HHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHh
Q 043051 300 TTGVTFDDFAGQEYIKRELQE-IVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM 378 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~e-iv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~ 378 (845)
..+.||+.|+-....|+.+.+ +.+|++..+-|++.|...-||.|||||||||||+++.|+|++++..++-++-++...
T Consensus 195 ~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~- 273 (457)
T KOG0743|consen 195 PHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL- 273 (457)
T ss_pred CCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC-
Confidence 456999999999999999875 777899999999999999999999999999999999999999999999888876322
Q ss_pred hhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCC--CCCc-hHHHHHHHHHHHhhcCCcccC-CcEEEEEEcC
Q 043051 379 FVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDI--GGGG-AEREQGLLQILTEMDGFKVST-SQVLVIGATN 454 (845)
Q Consensus 379 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~--~~~~-~e~~~~L~qLL~emdg~~~~~-~~ViVIaaTN 454 (845)
. ..++.++..+.. .+||+|.+||+-...++.... .+.+ ....-+|..||..+||+.... +--|||.|||
T Consensus 274 ----n-~dLr~LL~~t~~--kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTN 346 (457)
T KOG0743|consen 274 ----D-SDLRHLLLATPN--KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTN 346 (457)
T ss_pred ----c-HHHHHHHHhCCC--CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecC
Confidence 2 238888777643 479999999987654432211 1111 234467888999999987654 2368889999
Q ss_pred CCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccC--CcHHHHHHHHHHHHHHH
Q 043051 455 RLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTED--FTGAELQNILNEAGILT 532 (845)
Q Consensus 455 ~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~G--fSgaDL~~LvneAal~A 532 (845)
.++.|||||+||||+|.+|+++..+..+-+.+++.++.... +...+..+.+...+ .|+||++..+-
T Consensus 347 h~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~------~h~L~~eie~l~~~~~~tPA~V~e~lm------ 414 (457)
T KOG0743|consen 347 HKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE------DHRLFDEIERLIEETEVTPAQVAEELM------ 414 (457)
T ss_pred ChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC------CcchhHHHHHHhhcCccCHHHHHHHHh------
Confidence 99999999999999999999999999999999998886532 12334455554443 48999876432
Q ss_pred HHcCCCccCHHHHHHHHHhc
Q 043051 533 ARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 533 ~r~~~~~It~edl~~Al~r~ 552 (845)
..++...+..+.+.++++..
T Consensus 415 ~~~~dad~~lk~Lv~~l~~~ 434 (457)
T KOG0743|consen 415 KNKNDADVALKGLVEALESK 434 (457)
T ss_pred hccccHHHHHHHHHHHHHhh
Confidence 11112234555666666555
No 44
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.86 E-value=5.2e-21 Score=181.05 Aligned_cols=131 Identities=40% Similarity=0.698 Sum_probs=115.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhhhhhhhhhHHHHHHHHHhcC-CcEEEEcccchhccCCCCCCCC
Q 043051 342 VLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFA-PSIIFIDEIDAIGSKRGGPDIG 420 (845)
Q Consensus 342 VLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~a-P~ILfIDEIDaL~~~R~~~~~~ 420 (845)
|||+||||||||++|+++|+.++.+++.++++++.+.+.+.+...++++|..++... ||||||||+|.+..+.. .
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~----~ 76 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ----P 76 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS----T
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccc----c
Confidence 699999999999999999999999999999999998889999999999999999887 99999999999987651 2
Q ss_pred CCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCC
Q 043051 421 GGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGL 477 (845)
Q Consensus 421 ~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~ 477 (845)
..+......+.+++..++......++++||++||.++.++++++| +||+..|.+++
T Consensus 77 ~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 77 SSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 345566677778888888877666679999999999999999998 89999999874
No 45
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.84 E-value=3.2e-20 Score=192.00 Aligned_cols=197 Identities=28% Similarity=0.419 Sum_probs=138.6
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHh
Q 043051 299 ETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM 378 (845)
Q Consensus 299 ~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~ 378 (845)
.-+|.+|+|++||++++..+.-++...+... ....++|||||||||||+||+.||++++++|..++++.+.
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~-------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~-- 87 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKKRG-------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE-- 87 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHCTT-------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC----
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHhcC-------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh--
Confidence 3678899999999999999988877654321 1245899999999999999999999999999999986532
Q ss_pred hhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc-----CCc-------ccCCc
Q 043051 379 FVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD-----GFK-------VSTSQ 446 (845)
Q Consensus 379 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd-----g~~-------~~~~~ 446 (845)
....+..++.... ...||||||||.+ +...+..|+..++.-. |-. .+-.+
T Consensus 88 ----k~~dl~~il~~l~--~~~ILFIDEIHRl------------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 88 ----KAGDLAAILTNLK--EGDILFIDEIHRL------------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp ----SCHHHHHHHHT----TT-EEEECTCCC--------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred ----hHHHHHHHHHhcC--CCcEEEEechhhc------------cHHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 1233444444443 3579999999999 5677888888877511 111 11235
Q ss_pred EEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHH
Q 043051 447 VLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILN 526 (845)
Q Consensus 447 ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~Lvn 526 (845)
+.+|+||++...|.+.|+. ||.-+.++..++.++..+|++..+...++.. .+.....||+.+.| +++-..++++
T Consensus 150 FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i---~~~~~~~Ia~rsrG-tPRiAnrll~ 223 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEI---DEDAAEEIARRSRG-TPRIANRLLR 223 (233)
T ss_dssp -EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE----HHHHHHHHHCTTT-SHHHHHHHHH
T ss_pred ceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCc---CHHHHHHHHHhcCC-ChHHHHHHHH
Confidence 8999999999999999998 9998889999999999999998887776665 45668899999999 8988888877
Q ss_pred HH
Q 043051 527 EA 528 (845)
Q Consensus 527 eA 528 (845)
.+
T Consensus 224 rv 225 (233)
T PF05496_consen 224 RV 225 (233)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 46
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.83 E-value=7.2e-20 Score=200.55 Aligned_cols=224 Identities=26% Similarity=0.376 Sum_probs=160.8
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE 377 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~ 377 (845)
..-+|.+|+|++||+++..+-.-+-..+... ...+++||||||||||+||+.||+..+.+|..+|+..
T Consensus 16 ~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~---------~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--- 83 (436)
T COG2256 16 ERLRPKSLDEVVGQEHLLGEGKPLRRAVEAG---------HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--- 83 (436)
T ss_pred HHhCCCCHHHhcChHhhhCCCchHHHHHhcC---------CCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---
Confidence 3467889999999998775433333333322 2357999999999999999999999999999999854
Q ss_pred hhhhhhhhhHHHHHHHHHhcC----CcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEc
Q 043051 378 MFVGVAASRVKDLFASARSFA----PSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGAT 453 (845)
Q Consensus 378 ~~vG~~~~~vr~lF~~A~~~a----P~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaT 453 (845)
.+.+.+|.+++.|++.. ..||||||||.| +...|..|+-.++. +.|++|+||
T Consensus 84 ----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf------------nK~QQD~lLp~vE~--------G~iilIGAT 139 (436)
T COG2256 84 ----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRF------------NKAQQDALLPHVEN--------GTIILIGAT 139 (436)
T ss_pred ----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc------------ChhhhhhhhhhhcC--------CeEEEEecc
Confidence 36688999999996543 379999999999 34456666666543 569999988
Q ss_pred --CCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccch----hhhhhHHHHHHHHccCCcHHHHHHHHHH
Q 043051 454 --NRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSE----EEKDVLLQEIAELTEDFTGAELQNILNE 527 (845)
Q Consensus 454 --N~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~----~~~d~dl~~LA~~t~GfSgaDL~~Lvne 527 (845)
|+...|.+||++++ +++.+.+.+.++..++++..+........ ..++..++.++..+.| |.+.++|.
T Consensus 140 TENPsF~ln~ALlSR~---~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~aLN~ 212 (436)
T COG2256 140 TENPSFELNPALLSRA---RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARRALNL 212 (436)
T ss_pred CCCCCeeecHHHhhhh---heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHHHHHH
Confidence 67778999999976 57899999999999999985433322211 1245667888888777 55555553
Q ss_pred HH--HHHHHcCCCccCHHHHHHHHHhcccccccCCCCCCC
Q 043051 528 AG--ILTARKDLDYIGQEELLEALKRQKGTFETGQEDSTD 565 (845)
Q Consensus 528 Aa--l~A~r~~~~~It~edl~~Al~r~k~~~~~g~e~~~~ 565 (845)
.- ..+.+.+. .++.+++++.+.+....+..+.+.+++
T Consensus 213 LE~~~~~~~~~~-~~~~~~l~~~l~~~~~~~Dk~gD~hYd 251 (436)
T COG2256 213 LELAALSAEPDE-VLILELLEEILQRRSARFDKDGDAHYD 251 (436)
T ss_pred HHHHHHhcCCCc-ccCHHHHHHHHhhhhhccCCCcchHHH
Confidence 32 23333332 455899999998875555554444443
No 47
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.82 E-value=5.5e-19 Score=195.36 Aligned_cols=221 Identities=26% Similarity=0.308 Sum_probs=169.4
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHh
Q 043051 299 ETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM 378 (845)
Q Consensus 299 ~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~ 378 (845)
+.++.+|++++|++++++.+..++...+.+ ..++.++|||||||||||++|+++|++++..+..++++.+.
T Consensus 18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~-- 88 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE-- 88 (328)
T ss_pred hcCcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc--
Confidence 467889999999999999998888654322 23467899999999999999999999999999887776432
Q ss_pred hhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc-------CCc-----ccCCc
Q 043051 379 FVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD-------GFK-----VSTSQ 446 (845)
Q Consensus 379 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd-------g~~-----~~~~~ 446 (845)
....+..++... ..++||||||||.+. ...++.+..++.... +.. ..-.+
T Consensus 89 ----~~~~l~~~l~~l--~~~~vl~IDEi~~l~------------~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 89 ----KPGDLAAILTNL--EEGDVLFIDEIHRLS------------PVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred ----ChHHHHHHHHhc--ccCCEEEEecHhhcc------------hHHHHHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 122344444433 246899999999983 223444555554321 000 01123
Q ss_pred EEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHH
Q 043051 447 VLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILN 526 (845)
Q Consensus 447 ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~Lvn 526 (845)
+.+|++||++..++++|++ ||+..+.++.|+.+++.+|++..+...+... ++..+..|++.+.| +++.+.++++
T Consensus 151 ~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~---~~~~~~~ia~~~~G-~pR~a~~~l~ 224 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEI---DEEGALEIARRSRG-TPRIANRLLR 224 (328)
T ss_pred ceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHcCC-CchHHHHHHH
Confidence 7899999999999999988 9998999999999999999999888766554 45568899999998 6688999999
Q ss_pred HHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 527 EAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 527 eAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
.+..++...+...|+.+++..+++..
T Consensus 225 ~~~~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 225 RVRDFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 88777777666789999999999765
No 48
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.82 E-value=2.5e-19 Score=209.64 Aligned_cols=266 Identities=23% Similarity=0.258 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccccCCCCCCCCcccchhhhhhhhccccccc---cccccccCCCCCcccccccHHHHH
Q 043051 240 MRLALAVGLYIWIDNIMRPIYAKLIPCDLGTPPQKTRQPLQRRALGSLGKSRA---KFISAEETTGVTFDDFAGQEYIKR 316 (845)
Q Consensus 240 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~s~a---~~~~~~~~~~~tF~dVvG~de~k~ 316 (845)
+-+.+++|+|||..-+.+. + .+........+.++.+.+.+. ...+.++.++.+|++++|++..++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~f~~iiGqs~~i~ 75 (531)
T TIGR02902 8 IIFLIIIGLYFFNALKNQQ----------T--NKITIDKESKKELEKLNKMRAIRLTEPLSEKTRPKSFDEIIGQEEGIK 75 (531)
T ss_pred HHHHHHHHHHHHHHHHhhc----------C--CeeeeehhhhHHHHHHHHhhhhhhcchHHHhhCcCCHHHeeCcHHHHH
Confidence 3356777888887755541 1 111111122333443444443 234456789999999999999988
Q ss_pred HHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeEEeechhH-------HHhh
Q 043051 317 ELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA----------GVPFFAANGTDF-------VEMF 379 (845)
Q Consensus 317 eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el----------g~pfi~vs~sdf-------~~~~ 379 (845)
.+...+ . ...|.++||+||||||||++|+++..++ +.||+.++|+.. .+..
T Consensus 76 ~l~~al---~---------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~l 143 (531)
T TIGR02902 76 ALKAAL---C---------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPL 143 (531)
T ss_pred HHHHHH---h---------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhh
Confidence 887542 1 1235689999999999999999997653 468999998631 1111
Q ss_pred hhhhh----------------hhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc-----
Q 043051 380 VGVAA----------------SRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD----- 438 (845)
Q Consensus 380 vG~~~----------------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd----- 438 (845)
.|... ..-...+..| ..++|||||||.+ +...++.|+++|++-.
T Consensus 144 i~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L------------~~~~q~~LL~~Le~~~~~~~~ 208 (531)
T TIGR02902 144 IGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGEL------------HPVQMNKLLKVLEDRKVFLDS 208 (531)
T ss_pred cCCcccchhccccccccCCcccccCchhhcc---CCcEEEEechhhC------------CHHHHHHHHHHHHhCeeeecc
Confidence 11000 0001122222 3479999999999 4567888888886511
Q ss_pred ----CCc-------------ccCCcEEEE-EEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchh
Q 043051 439 ----GFK-------------VSTSQVLVI-GATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEE 500 (845)
Q Consensus 439 ----g~~-------------~~~~~ViVI-aaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~ 500 (845)
+.. ..+..+.+| +|||.|+.|+|++++ |+. .+.|+.++.+++.+|++..+++.++..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~Il~~~a~k~~i~i-- 283 (531)
T TIGR02902 209 AYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKEIAKNAAEKIGINL-- 283 (531)
T ss_pred ccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHHHHHHHHHHHcCCCc--
Confidence 000 011224455 555789999999999 664 788999999999999999998876554
Q ss_pred hhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 501 EKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 501 ~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
++..++.++..+. +++++.++++.|+..|..+++..|+.+|+.+++...
T Consensus 284 -s~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~~ 332 (531)
T TIGR02902 284 -EKHALELIVKYAS--NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAENG 332 (531)
T ss_pred -CHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCCc
Confidence 3445667776553 799999999999998888887899999999998754
No 49
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.82 E-value=1.1e-18 Score=190.38 Aligned_cols=216 Identities=25% Similarity=0.345 Sum_probs=161.2
Q ss_pred CcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhhhhhh
Q 043051 304 TFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVA 383 (845)
Q Consensus 304 tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~vG~~ 383 (845)
+|+|++|++++++.|..++...+.. ...+.+++|+||||||||+||+++|++++.++..++++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 7999999999999988877543321 123568999999999999999999999999988777653221
Q ss_pred hhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc-------C-----CcccCCcEEEEE
Q 043051 384 ASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD-------G-----FKVSTSQVLVIG 451 (845)
Q Consensus 384 ~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd-------g-----~~~~~~~ViVIa 451 (845)
...+...+... ..+.+|||||||.+.. ..+..|..++.... + ......++.+|+
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~------------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSP------------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCH------------HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 11223333332 2467999999999832 23444555544321 0 001123488999
Q ss_pred EcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 043051 452 ATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGIL 531 (845)
Q Consensus 452 aTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~ 531 (845)
+||++..+++++++ ||...+.++.|+.+++.++++..+...+... ++..+..+++.+.| .++.+.++++.+...
T Consensus 135 ~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~---~~~al~~ia~~~~G-~pR~~~~ll~~~~~~ 208 (305)
T TIGR00635 135 ATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEI---EPEAALEIARRSRG-TPRIANRLLRRVRDF 208 (305)
T ss_pred ecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCc---CHHHHHHHHHHhCC-CcchHHHHHHHHHHH
Confidence 99999999999998 9988899999999999999998887655543 45667889999988 568888899888777
Q ss_pred HHHcCCCccCHHHHHHHHHhc
Q 043051 532 TARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 532 A~r~~~~~It~edl~~Al~r~ 552 (845)
|...+...|+.+++..++...
T Consensus 209 a~~~~~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 209 AQVRGQKIINRDIALKALEML 229 (305)
T ss_pred HHHcCCCCcCHHHHHHHHHHh
Confidence 766666779999999999874
No 50
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4.5e-18 Score=195.13 Aligned_cols=268 Identities=19% Similarity=0.189 Sum_probs=199.4
Q ss_pred ccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC----CCeEEeechhHHHhhhh
Q 043051 306 DDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAG----VPFFAANGTDFVEMFVG 381 (845)
Q Consensus 306 ~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg----~pfi~vs~sdf~~~~vG 381 (845)
.|++-...+|++..+ +++ .| +..+.++||+||+|||||.||++++.++. +.+..++|+.+...-+.
T Consensus 408 ~d~i~~~s~kke~~n--~~~-sp-------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENAN--QEL-SP-------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhh--hhc-cc-------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 566666666665544 111 11 33356899999999999999999999874 56778899988776677
Q ss_pred hhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHh-hcCCcccCCcEEEEEEcCCCCCCC
Q 043051 382 VAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTE-MDGFKVSTSQVLVIGATNRLDILD 460 (845)
Q Consensus 382 ~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~e-mdg~~~~~~~ViVIaaTN~pd~LD 460 (845)
...+.++.+|..|..++|+||++|++|.|.... ...++......+.+..+|.+ ++-+......+.|||+.+....|+
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s--~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~ 555 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASAS--SNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLN 555 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccC--cccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcC
Confidence 778889999999999999999999999998722 22222233333444444422 222334556689999999999999
Q ss_pred hhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHH----cC
Q 043051 461 PALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTAR----KD 536 (845)
Q Consensus 461 pALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r----~~ 536 (845)
|.|.+|++|+.++.++.|+..+|.+||+..+.+..... ...+++.++..|+||...|+.-++.+|...|.. .+
T Consensus 556 ~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~---~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~ 632 (952)
T KOG0735|consen 556 PLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDI---TMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNG 632 (952)
T ss_pred hhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhh---hhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999887765332 345566699999999999999999999777662 23
Q ss_pred CCccCHHHHHHHHHhcccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhhC
Q 043051 537 LDYIGQEELLEALKRQKGTFETGQEDSTDIPEELKLRLAYREAAVAVLACHL 588 (845)
Q Consensus 537 ~~~It~edl~~Al~r~k~~~~~g~e~~~~ls~~ek~~iA~hEaGhAlv~~~l 588 (845)
.+.+|.++|.+++....+..+.|...+..-.-....+-.+||+-.+|...+.
T Consensus 633 ~klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~ 684 (952)
T KOG0735|consen 633 PKLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIE 684 (952)
T ss_pred cccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHHHHHHHHh
Confidence 3478999999999998877777766532221222335678888877776553
No 51
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.79 E-value=5.7e-18 Score=178.42 Aligned_cols=220 Identities=28% Similarity=0.355 Sum_probs=177.5
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhh
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMF 379 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~ 379 (845)
-++.+|+|.+|++++|+.|.-++..-+... ...-++|||||||.|||+||.-+|+|+|+.+-..++.-+.
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~-------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le--- 89 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKRG-------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE--- 89 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhcC-------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc---
Confidence 568899999999999999998887754332 2356899999999999999999999999999999987542
Q ss_pred hhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhh--c-----CC-----cccCCcE
Q 043051 380 VGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEM--D-----GF-----KVSTSQV 447 (845)
Q Consensus 380 vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~em--d-----g~-----~~~~~~V 447 (845)
.+..+-.++.... ...||||||||++. ...+..|+-.++.. | |. ..+-.++
T Consensus 90 ---K~gDlaaiLt~Le--~~DVLFIDEIHrl~------------~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 90 ---KPGDLAAILTNLE--EGDVLFIDEIHRLS------------PAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred ---ChhhHHHHHhcCC--cCCeEEEehhhhcC------------hhHHHHhhhhhhheeEEEEEccCCccceEeccCCCe
Confidence 2334445555543 34799999999993 34566777666541 1 11 1123458
Q ss_pred EEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHH
Q 043051 448 LVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNE 527 (845)
Q Consensus 448 iVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~Lvne 527 (845)
.+|+||.+...|...|+. ||....++..++.++..+|+........+.. .+.....||+++.| +++-..+++++
T Consensus 153 TLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i---~~~~a~eIA~rSRG-TPRIAnRLLrR 226 (332)
T COG2255 153 TLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEI---DEEAALEIARRSRG-TPRIANRLLRR 226 (332)
T ss_pred eEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCC---ChHHHHHHHHhccC-CcHHHHHHHHH
Confidence 999999999999999998 9999999999999999999999988777665 45567889999998 89988899999
Q ss_pred HHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 528 AGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 528 Aal~A~r~~~~~It~edl~~Al~r~ 552 (845)
..-.|.-++...|+.+-..+|++..
T Consensus 227 VRDfa~V~~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 227 VRDFAQVKGDGDIDRDIADKALKML 251 (332)
T ss_pred HHHHHHHhcCCcccHHHHHHHHHHh
Confidence 9888888888899999999999877
No 52
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.5e-18 Score=183.08 Aligned_cols=242 Identities=23% Similarity=0.313 Sum_probs=176.9
Q ss_pred cccccccHHHHHHHHHHHHH-hhCcHHHhhc-CCCCCceEEEEcCCCChHHHHHHHHHHhcC---------CCeEEeech
Q 043051 305 FDDFAGQEYIKRELQEIVRI-LKNDEEFQNK-GIYCPKGVLLHGPPGTGKTLLAKAIAGEAG---------VPFFAANGT 373 (845)
Q Consensus 305 F~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~-g~~~PrgVLL~GPPGTGKT~LArALA~elg---------~pfi~vs~s 373 (845)
|+.++=...+|+.|...+.. ++..++-.+- -+..-|-+||+||||||||+|+||+|+.+. ...+++++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 44555556788887765544 3322211111 123357799999999999999999999873 467899999
Q ss_pred hHHHhhhhhhhhhHHHHHHHHHhc---CCc--EEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEE
Q 043051 374 DFVEMFVGVAASRVKDLFASARSF---APS--IIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVL 448 (845)
Q Consensus 374 df~~~~vG~~~~~vr~lF~~A~~~---aP~--ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~Vi 448 (845)
.+.++|.+.+.+.|..+|++.... ..+ .++|||+++++..|.....+..+.+....+|.+|+++|.+...++ |+
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~N-vl 299 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPN-VL 299 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCC-EE
Confidence 999999999999999999987542 233 356899999999886555555667778899999999999886665 99
Q ss_pred EEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhc---ccch-----------hhhhhHHHHHHHH-c
Q 043051 449 VIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKY---FRSE-----------EEKDVLLQEIAEL-T 513 (845)
Q Consensus 449 VIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~---l~~~-----------~~~d~dl~~LA~~-t 513 (845)
+++|+|-.+.||.|+.. |-|-+.++.+|+...|.+|++..+...- +-.. ...+.....+... +
T Consensus 300 iL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~ 377 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELST 377 (423)
T ss_pred EEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhh
Confidence 99999999999999999 9999999999999999999998775421 1000 0112222333333 5
Q ss_pred cCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Q 043051 514 EDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKR 551 (845)
Q Consensus 514 ~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r 551 (845)
.|.||+-|+.+=--|. |.--....|+.+++..|+-.
T Consensus 378 ~gLSGRtlrkLP~Lah--a~y~~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 378 VGLSGRTLRKLPLLAH--AEYFRTFTVDLSNFLLALLE 413 (423)
T ss_pred cCCccchHhhhhHHHH--HhccCCCccChHHHHHHHHH
Confidence 8999999998765443 22223357888888777643
No 53
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=9e-18 Score=194.33 Aligned_cols=211 Identities=24% Similarity=0.421 Sum_probs=174.6
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccC
Q 043051 334 KGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSK 413 (845)
Q Consensus 334 ~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~ 413 (845)
.+.+.-..+||+|+||||||++++++|.++|.+++.++|.+++....+..+..+...|..|+...|+|||+-++|-++..
T Consensus 426 ~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id 505 (953)
T KOG0736|consen 426 ALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGID 505 (953)
T ss_pred hccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeec
Confidence 34455567999999999999999999999999999999999999888889999999999999999999999999999854
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhh
Q 043051 414 RGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARN 493 (845)
Q Consensus 414 R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~ 493 (845)
+. ++......+.+..++. .+-+..+..+++||++|+..+.|++.+.+ -|-..|.++.|+.++|.+||+.++..
T Consensus 506 ~d----gged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~ 578 (953)
T KOG0736|consen 506 QD----GGEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNH 578 (953)
T ss_pred CC----CchhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhc
Confidence 43 2333344444555444 45566566779999999999999999998 67778999999999999999999998
Q ss_pred hcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHH---c-C----------------CCccCHHHHHHHHHhcc
Q 043051 494 KYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTAR---K-D----------------LDYIGQEELLEALKRQK 553 (845)
Q Consensus 494 ~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r---~-~----------------~~~It~edl~~Al~r~k 553 (845)
..+. .++.++.+|..|.||+.+++..++..+.+.+.. . + ...++++||..++.+.+
T Consensus 579 ~~~n----~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~ 654 (953)
T KOG0736|consen 579 LPLN----QDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQ 654 (953)
T ss_pred cccc----hHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHH
Confidence 8877 789999999999999999999988766222221 1 1 14689999999999875
Q ss_pred cc
Q 043051 554 GT 555 (845)
Q Consensus 554 ~~ 555 (845)
..
T Consensus 655 ~~ 656 (953)
T KOG0736|consen 655 KE 656 (953)
T ss_pred Hh
Confidence 44
No 54
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.77 E-value=7.5e-18 Score=204.45 Aligned_cols=227 Identities=22% Similarity=0.323 Sum_probs=168.1
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeEE
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA----------GVPFFA 369 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el----------g~pfi~ 369 (845)
..+-++++++|+++..+.+.+++ ... ...+++|+||||||||++|+++|+.+ +..++.
T Consensus 176 ~r~~~l~~~igr~~ei~~~~~~L---~~~---------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 176 AKNGKIDPLIGREDELERTIQVL---CRR---------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred HhcCCCCcccCcHHHHHHHHHHH---hcC---------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 45678999999997777554443 222 24579999999999999999999987 677999
Q ss_pred eechhHH--HhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcE
Q 043051 370 ANGTDFV--EMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQV 447 (845)
Q Consensus 370 vs~sdf~--~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~V 447 (845)
++++.+. .+|.|..+.+++.+|+.+....|+||||||||.|.+.+.. .+++....+.|...|. .+.+
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~---~~~~~~~~~~L~~~l~--------~g~i 312 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGAT---SGGSMDASNLLKPALS--------SGKL 312 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCC---CCccHHHHHHHHHHHh--------CCCe
Confidence 9998887 4788999999999999998878999999999999765421 1222233444444332 3569
Q ss_pred EEEEEcCCCC-----CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhc-ccchhhhhhHHHHHHHHccCCc----
Q 043051 448 LVIGATNRLD-----ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKY-FRSEEEKDVLLQEIAELTEDFT---- 517 (845)
Q Consensus 448 iVIaaTN~pd-----~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~-l~~~~~~d~dl~~LA~~t~GfS---- 517 (845)
.+|++||..+ .+|++|.| ||. .|.|+.|+.+++.+||+.+..... ...-...+..+..++..+..|-
T Consensus 313 ~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~ 389 (731)
T TIGR02639 313 RCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRF 389 (731)
T ss_pred EEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccccccc
Confidence 9999999743 47999999 997 799999999999999997665421 1111225666777887766553
Q ss_pred -HHHHHHHHHHHHHHHHHc----CCCccCHHHHHHHHHhc
Q 043051 518 -GAELQNILNEAGILTARK----DLDYIGQEELLEALKRQ 552 (845)
Q Consensus 518 -gaDL~~LvneAal~A~r~----~~~~It~edl~~Al~r~ 552 (845)
+.....++++|+.....+ ....|+.+|+..++.+.
T Consensus 390 ~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~ 429 (731)
T TIGR02639 390 LPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKM 429 (731)
T ss_pred CCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHH
Confidence 445677888876544322 13459999999999987
No 55
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=4.7e-17 Score=189.45 Aligned_cols=219 Identities=44% Similarity=0.690 Sum_probs=194.1
Q ss_pred hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhhhhhhhhhHHHHHHHHHhcCCcEEEE
Q 043051 325 LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFI 404 (845)
Q Consensus 325 Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~aP~ILfI 404 (845)
+..+..++..+..+|++++++||||||||++++++|.+ +..++.+++.+...++.|....+.+.+|..++..+|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 34677788999999999999999999999999999999 76669999999999999999999999999999999999999
Q ss_pred cccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHH
Q 043051 405 DEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRF 484 (845)
Q Consensus 405 DEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~ 484 (845)
||+|.+.+.+.. ...........+++..|+++. ... +++++.||++..+|+++.+++||++.+.+..|+...+.
T Consensus 83 d~~~~~~~~~~~----~~~~~~~~v~~~l~~~~d~~~-~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T COG0464 83 DEIDALAPKRSS----DQGEVERRVVAQLLALMDGLK-RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRL 156 (494)
T ss_pred chhhhcccCccc----cccchhhHHHHHHHHhccccc-CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHH
Confidence 999999988864 223334566778888888888 555 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcC------CCccCHHHHHHHHHhccc
Q 043051 485 AILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKD------LDYIGQEELLEALKRQKG 554 (845)
Q Consensus 485 eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~------~~~It~edl~~Al~r~k~ 554 (845)
+|+..+....... .+.++..++..+.|++++++..++.++...+.++. ...++.+++.++++++.+
T Consensus 157 ei~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 157 EILQIHTRLMFLG----PPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred HHHHHHHhcCCCc----ccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCc
Confidence 9999998776655 46789999999999999999999999999988875 235899999999999855
No 56
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.75 E-value=1.2e-17 Score=179.93 Aligned_cols=237 Identities=24% Similarity=0.358 Sum_probs=163.3
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---eEEeec
Q 043051 297 AEETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVP---FFAANG 372 (845)
Q Consensus 297 ~~~~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~p---fi~vs~ 372 (845)
.++.++.+++|++|++++..+ .-++.. ++... -.+++||||||||||+||+.|+....-+ |+.+++
T Consensus 129 aermRPktL~dyvGQ~hlv~q-~gllrs~ieq~~---------ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSA 198 (554)
T KOG2028|consen 129 AERMRPKTLDDYVGQSHLVGQ-DGLLRSLIEQNR---------IPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSA 198 (554)
T ss_pred hhhcCcchHHHhcchhhhcCc-chHHHHHHHcCC---------CCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEec
Confidence 355788999999999988776 333322 33221 2369999999999999999999988766 888877
Q ss_pred hhHHHhhhhhhhhhHHHHHHHHHhc-----CCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcE
Q 043051 373 TDFVEMFVGVAASRVKDLFASARSF-----APSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQV 447 (845)
Q Consensus 373 sdf~~~~vG~~~~~vr~lF~~A~~~-----aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~V 447 (845)
.. .+...+|++|+++++. ...||||||||.+.+ ..+.+++-.++ .+.|
T Consensus 199 t~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk------------sQQD~fLP~VE--------~G~I 251 (554)
T KOG2028|consen 199 TN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK------------SQQDTFLPHVE--------NGDI 251 (554)
T ss_pred cc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh------------hhhhcccceec--------cCce
Confidence 53 3567899999999653 357999999999943 34555555433 3569
Q ss_pred EEEEEc--CCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhc--------ccc--hhhhhhHHHHHHHHccC
Q 043051 448 LVIGAT--NRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKY--------FRS--EEEKDVLLQEIAELTED 515 (845)
Q Consensus 448 iVIaaT--N~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~--------l~~--~~~~d~dl~~LA~~t~G 515 (845)
++|+|| |+...|..+|+++| +++.+...+.+....||.+...-.+ +.. -...+..++.++..+.|
T Consensus 252 ~lIGATTENPSFqln~aLlSRC---~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdG 328 (554)
T KOG2028|consen 252 TLIGATTENPSFQLNAALLSRC---RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDG 328 (554)
T ss_pred EEEecccCCCccchhHHHHhcc---ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCc
Confidence 999988 66678999999977 4788999999999999987554211 111 12356678899999988
Q ss_pred CcHHHHHHHHHHHHHHHHHcC---CCccCHHHHHHHHHhcccccccCCCCCCCchhHHHHHHHHHHH
Q 043051 516 FTGAELQNILNEAGILTARKD---LDYIGQEELLEALKRQKGTFETGQEDSTDIPEELKLRLAYREA 579 (845)
Q Consensus 516 fSgaDL~~LvneAal~A~r~~---~~~It~edl~~Al~r~k~~~~~g~e~~~~ls~~ek~~iA~hEa 579 (845)
-..+.|..+--.+.+...+.+ ...++.+|+.+++.+....|....+.++ ..+-|+|..
T Consensus 329 DaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s~~~YDr~Ge~HY------ntISA~HKS 389 (554)
T KOG2028|consen 329 DARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSHILYDRAGEEHY------NTISALHKS 389 (554)
T ss_pred hHHHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhhccceecccchhHH------HHHHHHHHh
Confidence 444333333222234444544 2368999999999988544443333333 235566663
No 57
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=4.6e-17 Score=185.86 Aligned_cols=207 Identities=14% Similarity=0.165 Sum_probs=154.2
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC----------
Q 043051 297 AEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVP---------- 366 (845)
Q Consensus 297 ~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~p---------- 366 (845)
.++++|.+|+||+|++.+...|...+.. .+.|..+||+||||||||++|+++|+.+++.
T Consensus 9 ~~KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~ 77 (484)
T PRK14956 9 SRKYRPQFFRDVIHQDLAIGALQNALKS-----------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNE 77 (484)
T ss_pred HHHhCCCCHHHHhChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCC
Confidence 3568999999999999999987776642 2245679999999999999999999998763
Q ss_pred --------------eEEeechhHHHhhhhhhhhhHHHHHHHHHh----cCCcEEEEcccchhccCCCCCCCCCCchHHHH
Q 043051 367 --------------FFAANGTDFVEMFVGVAASRVKDLFASARS----FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQ 428 (845)
Q Consensus 367 --------------fi~vs~sdf~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~ 428 (845)
|+.++++ ...+...+|++.+.+.. ....|+||||+|.+ +.+..+
T Consensus 78 C~sC~~i~~g~~~dviEIdaa------s~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L------------s~~A~N 139 (484)
T PRK14956 78 CTSCLEITKGISSDVLEIDAA------SNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHML------------TDQSFN 139 (484)
T ss_pred CcHHHHHHccCCccceeechh------hcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc------------CHHHHH
Confidence 2222221 11234566776665542 23459999999999 334455
Q ss_pred HHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHH
Q 043051 429 GLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQE 508 (845)
Q Consensus 429 ~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~ 508 (845)
.|+..|++ .+.++++|.+|+.+..|.++++++| .++.|..++.++..+.++..+...++.. .+..+..
T Consensus 140 ALLKtLEE------Pp~~viFILaTte~~kI~~TI~SRC---q~~~f~~ls~~~i~~~L~~i~~~Egi~~---e~eAL~~ 207 (484)
T PRK14956 140 ALLKTLEE------PPAHIVFILATTEFHKIPETILSRC---QDFIFKKVPLSVLQDYSEKLCKIENVQY---DQEGLFW 207 (484)
T ss_pred HHHHHhhc------CCCceEEEeecCChhhccHHHHhhh---heeeecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHH
Confidence 55555543 4566999999999999999999944 4789999999999999998887766543 4567899
Q ss_pred HHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 043051 509 IAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEAL 549 (845)
Q Consensus 509 LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al 549 (845)
||+.+.| +.++..+++..+...+ ...|+.+++.+.+
T Consensus 208 Ia~~S~G-d~RdAL~lLeq~i~~~----~~~it~~~V~~~l 243 (484)
T PRK14956 208 IAKKGDG-SVRDMLSFMEQAIVFT----DSKLTGVKIRKMI 243 (484)
T ss_pred HHHHcCC-hHHHHHHHHHHHHHhC----CCCcCHHHHHHHh
Confidence 9999998 7888888888765332 2358998887766
No 58
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.74 E-value=7e-17 Score=184.07 Aligned_cols=207 Identities=30% Similarity=0.418 Sum_probs=151.0
Q ss_pred ccCCCCCcccccccHHHHHH---HHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechh
Q 043051 298 EETTGVTFDDFAGQEYIKRE---LQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTD 374 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~e---L~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sd 374 (845)
++.++.+|+|++|++++... |..++. .. .+.+++|+||||||||++|+++|+..+.+|+.++++.
T Consensus 4 ~~~RP~~l~d~vGq~~~v~~~~~L~~~i~---~~---------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~ 71 (413)
T PRK13342 4 ERMRPKTLDEVVGQEHLLGPGKPLRRMIE---AG---------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT 71 (413)
T ss_pred hhhCCCCHHHhcCcHHHhCcchHHHHHHH---cC---------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 45788999999999998766 555542 21 1347999999999999999999999999999999864
Q ss_pred HHHhhhhhhhhhHHHHHHHHHh----cCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEE
Q 043051 375 FVEMFVGVAASRVKDLFASARS----FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVI 450 (845)
Q Consensus 375 f~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVI 450 (845)
. +...++.+++.+.. ....||||||+|.+. ...+..|+..+++ +.+++|
T Consensus 72 ~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~------------~~~q~~LL~~le~--------~~iilI 124 (413)
T PRK13342 72 S-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN------------KAQQDALLPHVED--------GTITLI 124 (413)
T ss_pred c-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC------------HHHHHHHHHHhhc--------CcEEEE
Confidence 2 23456667766642 245799999999982 3445555555433 347777
Q ss_pred EEc--CCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHH
Q 043051 451 GAT--NRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEA 528 (845)
Q Consensus 451 aaT--N~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneA 528 (845)
++| |....++++|++ |+ ..+.+..++.++...+++..+...........+..++.+++.+.| ..+.+.+++..+
T Consensus 125 ~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~ 200 (413)
T PRK13342 125 GATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELA 200 (413)
T ss_pred EeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 765 344578999999 66 688999999999999999877653111001245567888888866 666777777666
Q ss_pred HHHHHHcCCCccCHHHHHHHHHhc
Q 043051 529 GILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 529 al~A~r~~~~~It~edl~~Al~r~ 552 (845)
+.. ...|+.+++.+++...
T Consensus 201 ~~~-----~~~It~~~v~~~~~~~ 219 (413)
T PRK13342 201 ALG-----VDSITLELLEEALQKR 219 (413)
T ss_pred HHc-----cCCCCHHHHHHHHhhh
Confidence 533 4579999999999875
No 59
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=1.5e-16 Score=187.58 Aligned_cols=209 Identities=15% Similarity=0.156 Sum_probs=156.7
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVP----------- 366 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~p----------- 366 (845)
+++++.+|+||+|++++++.|...+.. .+++..+||+||+|||||++|+++|+.+++.
T Consensus 8 rKYRPqtFdEVIGQe~Vv~~L~~aL~~-----------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C 76 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVRALTHALDG-----------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC 76 (830)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHhc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence 568999999999999999988776531 2346788999999999999999999988652
Q ss_pred -------------eEEeechhHHHhhhhhhhhhHHHHHHHHHh----cCCcEEEEcccchhccCCCCCCCCCCchHHHHH
Q 043051 367 -------------FFAANGTDFVEMFVGVAASRVKDLFASARS----FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQG 429 (845)
Q Consensus 367 -------------fi~vs~sdf~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~ 429 (845)
++.++.++ ..+...++++++.+.. ....|+||||+|.| +....+.
T Consensus 77 ~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L------------T~~A~NA 138 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHML------------TNHAFNA 138 (830)
T ss_pred HHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhC------------CHHHHHH
Confidence 22222211 1234567777777643 12369999999999 3345566
Q ss_pred HHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHH
Q 043051 430 LLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEI 509 (845)
Q Consensus 430 L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~L 509 (845)
|+..|++ ...++++|.+||.+..|.+.|+++| .++.|..++.++..+.|+..+...++.. .+..+..|
T Consensus 139 LLKtLEE------PP~~v~FILaTtd~~KIp~TIrSRC---q~f~Fk~Ls~eeIv~~L~~Il~~EgI~i---d~eAL~lI 206 (830)
T PRK07003 139 MLKTLEE------PPPHVKFILATTDPQKIPVTVLSRC---LQFNLKQMPAGHIVSHLERILGEERIAF---EPQALRLL 206 (830)
T ss_pred HHHHHHh------cCCCeEEEEEECChhhccchhhhhe---EEEecCCcCHHHHHHHHHHHHHHcCCCC---CHHHHHHH
Confidence 6666666 3456899999999999999999955 6899999999999999999888766554 46678899
Q ss_pred HHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 510 AELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 510 A~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
++.+.| +.++..+++..+..+. ...|+.+++...+...
T Consensus 207 A~~A~G-smRdALsLLdQAia~~----~~~It~~~V~~~LG~~ 244 (830)
T PRK07003 207 ARAAQG-SMRDALSLTDQAIAYS----ANEVTETAVSGMLGAL 244 (830)
T ss_pred HHHcCC-CHHHHHHHHHHHHHhc----cCCcCHHHHHHHhCCC
Confidence 999988 7888888887765432 2357777776655443
No 60
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=1.2e-16 Score=184.38 Aligned_cols=209 Identities=20% Similarity=0.254 Sum_probs=149.6
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC------------
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGV------------ 365 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~------------ 365 (845)
++++|.+|+||+|++++++.|...+. . .+.|.++|||||||||||++|+++|+.+++
T Consensus 6 ~kyRP~~~~divGq~~i~~~L~~~i~---~--------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINALK---K--------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHH---c--------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 45789999999999999887776553 2 125678999999999999999999998865
Q ss_pred ------------CeEEeechhHHHhhhhhhhhhHHHHHHHHHhc----CCcEEEEcccchhccCCCCCCCCCCchHHHHH
Q 043051 366 ------------PFFAANGTDFVEMFVGVAASRVKDLFASARSF----APSIIFIDEIDAIGSKRGGPDIGGGGAEREQG 429 (845)
Q Consensus 366 ------------pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~ 429 (845)
.++.++++. ..+...+|.+.+.+... ...||||||+|.+. ......
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt------------~~a~~~ 136 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT------------KEAFNA 136 (472)
T ss_pred HHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH------------HHHHHH
Confidence 344554431 12334566666655421 24699999999993 223344
Q ss_pred HHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHH
Q 043051 430 LLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEI 509 (845)
Q Consensus 430 L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~L 509 (845)
|+..+.+ .++.+++|++|+.+..+++++.+ |+ ..+.|.+|+.++...+++..+...+... ++..+..|
T Consensus 137 LLk~LE~------p~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i---~~eal~~I 204 (472)
T PRK14962 137 LLKTLEE------PPSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEI---DREALSFI 204 (472)
T ss_pred HHHHHHh------CCCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCC---CHHHHHHH
Confidence 4444443 33457888888788899999999 55 4899999999999999998887666544 45668889
Q ss_pred HHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 510 AELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 510 A~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
+..+.| +.+.+.+.+..+... .+ ..||.+++.+++...
T Consensus 205 a~~s~G-dlR~aln~Le~l~~~---~~-~~It~e~V~~~l~~~ 242 (472)
T PRK14962 205 AKRASG-GLRDALTMLEQVWKF---SE-GKITLETVHEALGLI 242 (472)
T ss_pred HHHhCC-CHHHHHHHHHHHHHh---cC-CCCCHHHHHHHHcCC
Confidence 988776 555666665544332 22 349999999988665
No 61
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.73 E-value=8.3e-17 Score=196.45 Aligned_cols=227 Identities=24% Similarity=0.349 Sum_probs=152.0
Q ss_pred ccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHH---------
Q 043051 306 DDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFV--------- 376 (845)
Q Consensus 306 ~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~--------- 376 (845)
++++|++++|+.+.+.+...... +...+.++||+||||||||++|+++|+.++.+|+.++++.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 35899999999998866543211 111234799999999999999999999999999999876432
Q ss_pred HhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhh--cCC-------cccCCcE
Q 043051 377 EMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEM--DGF-------KVSTSQV 447 (845)
Q Consensus 377 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~em--dg~-------~~~~~~V 447 (845)
..|+|....++...|..+....| ||||||||.+++... ......|+++|... ..| ..+.+++
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~--------~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFR--------GDPASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccC--------CCHHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 24667777788888888876666 899999999975321 11235566665431 111 1223569
Q ss_pred EEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhh-----cccch--hhhhhHHHHHHH-HccCCcHH
Q 043051 448 LVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNK-----YFRSE--EEKDVLLQEIAE-LTEDFTGA 519 (845)
Q Consensus 448 iVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~-----~l~~~--~~~d~dl~~LA~-~t~GfSga 519 (845)
++|+|||.++.++++|++ ||+ .|.|+.|+.+++.+|++.++... ++... ...+..+..+++ .+.....+
T Consensus 465 ~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R 541 (775)
T TIGR00763 465 IFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVR 541 (775)
T ss_pred EEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCCh
Confidence 999999999999999999 885 78999999999999998877322 22110 123445666665 33333444
Q ss_pred HHH----HHHHHHHHHHHHcCC--------CccCHHHHHHHHH
Q 043051 520 ELQ----NILNEAGILTARKDL--------DYIGQEELLEALK 550 (845)
Q Consensus 520 DL~----~LvneAal~A~r~~~--------~~It~edl~~Al~ 550 (845)
+|+ ++|+.++......+. -.|+.+++.+-+.
T Consensus 542 ~l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 542 NLERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLG 584 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcC
Confidence 544 455555443332121 2466666655543
No 62
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=1.7e-16 Score=185.63 Aligned_cols=209 Identities=16% Similarity=0.182 Sum_probs=156.5
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC------------
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGV------------ 365 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~------------ 365 (845)
.++++.+|+||+|++.+++.|...+. ..+++..+||+||||||||++|+++|+.+++
T Consensus 7 rKyRPktFddVIGQe~vv~~L~~aI~-----------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C 75 (702)
T PRK14960 7 RKYRPRNFNELVGQNHVSRALSSALE-----------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC 75 (702)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence 45889999999999999998877764 2235678999999999999999999999875
Q ss_pred ------------CeEEeechhHHHhhhhhhhhhHHHHHHHHHh----cCCcEEEEcccchhccCCCCCCCCCCchHHHHH
Q 043051 366 ------------PFFAANGTDFVEMFVGVAASRVKDLFASARS----FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQG 429 (845)
Q Consensus 366 ------------pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~ 429 (845)
.++.+++++ ..+...+|.+...+.. ....|++|||+|.| +....+.
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~L------------S~~A~NA 137 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHML------------STHSFNA 137 (702)
T ss_pred HHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhc------------CHHHHHH
Confidence 233333321 1234567777766532 13469999999999 3345556
Q ss_pred HHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHH
Q 043051 430 LLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEI 509 (845)
Q Consensus 430 L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~L 509 (845)
|+..|++ .++.+.+|.+|+.+..+.+.++++| .++.|..++.++..+.++..+...+... .+..+..|
T Consensus 138 LLKtLEE------PP~~v~FILaTtd~~kIp~TIlSRC---q~feFkpLs~eEI~k~L~~Il~kEgI~i---d~eAL~~I 205 (702)
T PRK14960 138 LLKTLEE------PPEHVKFLFATTDPQKLPITVISRC---LQFTLRPLAVDEITKHLGAILEKEQIAA---DQDAIWQI 205 (702)
T ss_pred HHHHHhc------CCCCcEEEEEECChHhhhHHHHHhh---heeeccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHH
Confidence 6666655 2345788888888888989999844 5899999999999999999888776654 45678899
Q ss_pred HHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 510 AELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 510 A~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
++.+.| +.+++.+++..+... +...|+.+++...+...
T Consensus 206 A~~S~G-dLRdALnLLDQaIay----g~g~IT~edV~~lLG~~ 243 (702)
T PRK14960 206 AESAQG-SLRDALSLTDQAIAY----GQGAVHHQDVKEMLGLI 243 (702)
T ss_pred HHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHhccC
Confidence 998887 788888887766432 34579999998876644
No 63
>PRK04195 replication factor C large subunit; Provisional
Probab=99.73 E-value=2.2e-16 Score=183.44 Aligned_cols=215 Identities=22% Similarity=0.278 Sum_probs=156.9
Q ss_pred ccccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeech
Q 043051 294 FISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGT 373 (845)
Q Consensus 294 ~~~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~s 373 (845)
+.|.++++|.+|+||+|++++++.|..++....+ ..+++++||+||||||||++|+++|++++.+++.++++
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnas 73 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNAS 73 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccc
Confidence 4577889999999999999999999888765431 23478999999999999999999999999999999998
Q ss_pred hHHHhhhhhhhhhHHHHHHHHHh------cCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcE
Q 043051 374 DFVEMFVGVAASRVKDLFASARS------FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQV 447 (845)
Q Consensus 374 df~~~~vG~~~~~vr~lF~~A~~------~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~V 447 (845)
+.... ..++.+...+.. ..+.+|+|||+|.+..+. .......|..++.. .+.
T Consensus 74 d~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~--------d~~~~~aL~~~l~~--------~~~ 131 (482)
T PRK04195 74 DQRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE--------DRGGARAILELIKK--------AKQ 131 (482)
T ss_pred ccccH------HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc--------chhHHHHHHHHHHc--------CCC
Confidence 75421 123333332221 246799999999985321 11223445555542 124
Q ss_pred EEEEEcCCCCCCCh-hhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHH
Q 043051 448 LVIGATNRLDILDP-ALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILN 526 (845)
Q Consensus 448 iVIaaTN~pd~LDp-ALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~Lvn 526 (845)
.+|+++|.+..+++ .|.+ ....|.|+.|+..++..+++..+...++.. ++..++.|+..+.| |++.+++
T Consensus 132 ~iIli~n~~~~~~~k~Lrs---r~~~I~f~~~~~~~i~~~L~~i~~~egi~i---~~eaL~~Ia~~s~G----DlR~ain 201 (482)
T PRK04195 132 PIILTANDPYDPSLRELRN---ACLMIEFKRLSTRSIVPVLKRICRKEGIEC---DDEALKEIAERSGG----DLRSAIN 201 (482)
T ss_pred CEEEeccCccccchhhHhc---cceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCC----CHHHHHH
Confidence 46667888888877 5655 336899999999999999999998777654 45678888888655 8888888
Q ss_pred HHHHHHHHcCCCccCHHHHHHHHH
Q 043051 527 EAGILTARKDLDYIGQEELLEALK 550 (845)
Q Consensus 527 eAal~A~r~~~~~It~edl~~Al~ 550 (845)
....++ .+...|+.+++.....
T Consensus 202 ~Lq~~a--~~~~~it~~~v~~~~~ 223 (482)
T PRK04195 202 DLQAIA--EGYGKLTLEDVKTLGR 223 (482)
T ss_pred HHHHHh--cCCCCCcHHHHHHhhc
Confidence 776543 3456789998887653
No 64
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.72 E-value=4.7e-16 Score=179.21 Aligned_cols=224 Identities=21% Similarity=0.267 Sum_probs=158.7
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeEEeechh
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA-----GVPFFAANGTD 374 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el-----g~pfi~vs~sd 374 (845)
.+..+|++++..+.....+..+..+..++. ....+++||||||||||+|++++++++ +..++++++.+
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~~~~-------~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~ 188 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAENPG-------KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK 188 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHhCcC-------ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 467799996643433333333333333321 123579999999999999999999987 56799999999
Q ss_pred HHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcC
Q 043051 375 FVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATN 454 (845)
Q Consensus 375 f~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN 454 (845)
|...+..........-|..... .+.+|+|||||.+.++ ...++.+..++..+-. .+..+||+++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~----------~~~~~~l~~~~n~l~~----~~~~iiits~~ 253 (450)
T PRK00149 189 FTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGK----------ERTQEEFFHTFNALHE----AGKQIVLTSDR 253 (450)
T ss_pred HHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCC----------HHHHHHHHHHHHHHHH----CCCcEEEECCC
Confidence 8877655433222222332222 4679999999998432 2234556666555421 23356666666
Q ss_pred CCCC---CChhhhccCccc--EEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHH
Q 043051 455 RLDI---LDPALLRKGRFD--KIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAG 529 (845)
Q Consensus 455 ~pd~---LDpALlRpgRFd--r~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAa 529 (845)
.|.. ++++|.+ ||. .++.+..|+.++|.+||+..+...++.. ++..++.||..+.| +.++|..+++...
T Consensus 254 ~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l---~~e~l~~ia~~~~~-~~R~l~~~l~~l~ 327 (450)
T PRK00149 254 PPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDL---PDEVLEFIAKNITS-NVRELEGALNRLI 327 (450)
T ss_pred CHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHcCcCC-CHHHHHHHHHHHH
Confidence 6655 6789998 775 5899999999999999999998765543 56679999999887 8999999999887
Q ss_pred HHHHHcCCCccCHHHHHHHHHhc
Q 043051 530 ILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 530 l~A~r~~~~~It~edl~~Al~r~ 552 (845)
..+...+ ..||.+.+++++...
T Consensus 328 ~~~~~~~-~~it~~~~~~~l~~~ 349 (450)
T PRK00149 328 AYASLTG-KPITLELAKEALKDL 349 (450)
T ss_pred HHHHhhC-CCCCHHHHHHHHHHh
Confidence 7766655 569999999999876
No 65
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=9.7e-17 Score=187.25 Aligned_cols=209 Identities=16% Similarity=0.172 Sum_probs=154.8
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVP----------- 366 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~p----------- 366 (845)
.++++.+|+||+|++.+++.|.+.+..- +++..+||+||+|||||++|+.+|+.+++.
T Consensus 8 rKYRPqtFddVIGQe~vv~~L~~al~~g-----------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 8 RKWRPRDFTTLVGQEHVVRALTHALEQQ-----------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 4588999999999999999888776532 346789999999999999999999998761
Q ss_pred ------------------eEEeechhHHHhhhhhhhhhHHHHHHHHHh----cCCcEEEEcccchhccCCCCCCCCCCch
Q 043051 367 ------------------FFAANGTDFVEMFVGVAASRVKDLFASARS----FAPSIIFIDEIDAIGSKRGGPDIGGGGA 424 (845)
Q Consensus 367 ------------------fi~vs~sdf~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~R~~~~~~~~~~ 424 (845)
++.+++++ ..+.+.+|++.+.+.. ....|+||||+|.| +.
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~L------------s~ 138 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML------------TN 138 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhc------------CH
Confidence 22222211 1234667777776643 12469999999999 23
Q ss_pred HHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhh
Q 043051 425 EREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDV 504 (845)
Q Consensus 425 e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~ 504 (845)
...+.|+..|++ .+.++++|.+||.+..|.+.|+++| .++.|..++.++..+.|+..+...++.. .+.
T Consensus 139 ~AaNALLKTLEE------PP~~v~FILaTtep~kLlpTIrSRC---q~f~f~~ls~eei~~~L~~Il~~Egi~~---d~e 206 (700)
T PRK12323 139 HAFNAMLKTLEE------PPEHVKFILATTDPQKIPVTVLSRC---LQFNLKQMPPGHIVSHLDAILGEEGIAH---EVN 206 (700)
T ss_pred HHHHHHHHhhcc------CCCCceEEEEeCChHhhhhHHHHHH---HhcccCCCChHHHHHHHHHHHHHcCCCC---CHH
Confidence 344455554444 4566899999999999999999955 5889999999999999998887665543 345
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 505 LLQEIAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 505 dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
.+..|++.+.| +.++..+++..+... +...|+.+++.+.+...
T Consensus 207 AL~~IA~~A~G-s~RdALsLLdQaia~----~~~~It~~~V~~~LG~~ 249 (700)
T PRK12323 207 ALRLLAQAAQG-SMRDALSLTDQAIAY----SAGNVSEEAVRGMLGAI 249 (700)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHh----ccCCcCHHHHHHHhCCC
Confidence 67888999888 888998988876532 23458887777766443
No 66
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=2.3e-16 Score=183.62 Aligned_cols=210 Identities=17% Similarity=0.182 Sum_probs=157.3
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC----------
Q 043051 297 AEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVP---------- 366 (845)
Q Consensus 297 ~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~p---------- 366 (845)
.++++|.+|+||+|++.+++.|...+.. .+.|..+||+||||||||++|+++|+.+++.
T Consensus 7 ~~kyRP~~f~divGq~~v~~~L~~~~~~-----------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 75 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVVRALSNALDQ-----------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCND 75 (509)
T ss_pred HHHHCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCC
Confidence 3468899999999999999988877743 2346689999999999999999999998653
Q ss_pred --------------eEEeechhHHHhhhhhhhhhHHHHHHHHHh----cCCcEEEEcccchhccCCCCCCCCCCchHHHH
Q 043051 367 --------------FFAANGTDFVEMFVGVAASRVKDLFASARS----FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQ 428 (845)
Q Consensus 367 --------------fi~vs~sdf~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~ 428 (845)
++.+++++ ..+...+|++.+.+.. ....|++|||+|.+ +....+
T Consensus 76 C~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~l------------s~~a~n 137 (509)
T PRK14958 76 CENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHML------------SGHSFN 137 (509)
T ss_pred CHHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhc------------CHHHHH
Confidence 34444321 2344567777776543 12359999999999 334455
Q ss_pred HHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHH
Q 043051 429 GLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQE 508 (845)
Q Consensus 429 ~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~ 508 (845)
.|+..|++ .+.++.+|.+|+.+..+.+.++++| ..+.|..++.++..+.++..+...+... .+..+..
T Consensus 138 aLLk~LEe------pp~~~~fIlattd~~kl~~tI~SRc---~~~~f~~l~~~~i~~~l~~il~~egi~~---~~~al~~ 205 (509)
T PRK14958 138 ALLKTLEE------PPSHVKFILATTDHHKLPVTVLSRC---LQFHLAQLPPLQIAAHCQHLLKEENVEF---ENAALDL 205 (509)
T ss_pred HHHHHHhc------cCCCeEEEEEECChHhchHHHHHHh---hhhhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHH
Confidence 66666665 3445888888888888988999955 5788999999999988888888766654 4556888
Q ss_pred HHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 509 IAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 509 LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
+++.+.| +.+++.+++..+..+ +...||.+++.+.+...
T Consensus 206 ia~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~lg~~ 244 (509)
T PRK14958 206 LARAANG-SVRDALSLLDQSIAY----GNGKVLIADVKTMLGTI 244 (509)
T ss_pred HHHHcCC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHHHCCC
Confidence 9988877 888888888777433 34579999999877655
No 67
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=5.5e-16 Score=173.90 Aligned_cols=215 Identities=19% Similarity=0.210 Sum_probs=152.0
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEE--------
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFA-------- 369 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~-------- 369 (845)
++++|.+|+||+|++.+++.|...+.. .+.|..+||+||||||||++|+++|+++.+....
T Consensus 8 ~kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 8 RKWRPQYFRDIIGQKHIVTAISNGLSL-----------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred HHhCCCchhhccChHHHHHHHHHHHHc-----------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 458899999999999999988776632 2346789999999999999999999998642110
Q ss_pred eechhH--------HHh--hhhhhhhhHHHHHHHHHhc----CCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHH
Q 043051 370 ANGTDF--------VEM--FVGVAASRVKDLFASARSF----APSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILT 435 (845)
Q Consensus 370 vs~sdf--------~~~--~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~ 435 (845)
.+|.++ .+. ....+...++.+.+.+... ...|++|||+|.+ +....+.|+..++
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l------------~~~a~naLLk~lE 144 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHML------------SRHSFNALLKTLE 144 (363)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhc------------CHHHHHHHHHHHh
Confidence 011111 100 0012334566766665321 2359999999998 2234445555555
Q ss_pred hhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccC
Q 043051 436 EMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTED 515 (845)
Q Consensus 436 emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~G 515 (845)
+ .+..+.+|.+|+.++.+.+++.+ |+ ..+.|++|+.++..++++..++..+... ++..+..++..+.|
T Consensus 145 e------~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i---~~~al~~ia~~s~G 212 (363)
T PRK14961 145 E------PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDT---DEYALKLIAYHAHG 212 (363)
T ss_pred c------CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCC
Confidence 4 33457777788888889999998 44 5789999999999999998887766443 45668888988877
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 516 FTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 516 fSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
+.+++.+++..+... +...|+.+++.+++...
T Consensus 213 -~~R~al~~l~~~~~~----~~~~It~~~v~~~l~~~ 244 (363)
T PRK14961 213 -SMRDALNLLEHAINL----GKGNINIKNVTDMLGLL 244 (363)
T ss_pred -CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHCCC
Confidence 778888887766533 35679999998887544
No 68
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.71 E-value=4.8e-16 Score=180.22 Aligned_cols=220 Identities=21% Similarity=0.267 Sum_probs=160.2
Q ss_pred ccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeE-------
Q 043051 296 SAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFF------- 368 (845)
Q Consensus 296 ~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi------- 368 (845)
...+++|.+|+|++|++.+.+.|...+.. .+.|.++||+||||||||++|+++|+.+++.-.
T Consensus 11 la~kyRP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~ 79 (507)
T PRK06645 11 FARKYRPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTI 79 (507)
T ss_pred hhhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCc
Confidence 34568999999999999999887765532 235778999999999999999999999865311
Q ss_pred -----EeechhHH--------Hh--hhhhhhhhHHHHHHHHHhc----CCcEEEEcccchhccCCCCCCCCCCchHHHHH
Q 043051 369 -----AANGTDFV--------EM--FVGVAASRVKDLFASARSF----APSIIFIDEIDAIGSKRGGPDIGGGGAEREQG 429 (845)
Q Consensus 369 -----~vs~sdf~--------~~--~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~ 429 (845)
.-+|..+. +. ....+...++.+++.+... ...|++|||+|.+. ....+.
T Consensus 80 ~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls------------~~a~na 147 (507)
T PRK06645 80 KTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS------------KGAFNA 147 (507)
T ss_pred CCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC------------HHHHHH
Confidence 00111111 10 0112456788888887542 23599999999982 233445
Q ss_pred HHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHH
Q 043051 430 LLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEI 509 (845)
Q Consensus 430 L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~L 509 (845)
|+..|++ .+..+++|.+|+.++.+.+++.++| ..+.|..++.++..++++..++..+... .+..+..|
T Consensus 148 LLk~LEe------pp~~~vfI~aTte~~kI~~tI~SRc---~~~ef~~ls~~el~~~L~~i~~~egi~i---e~eAL~~I 215 (507)
T PRK06645 148 LLKTLEE------PPPHIIFIFATTEVQKIPATIISRC---QRYDLRRLSFEEIFKLLEYITKQENLKT---DIEALRII 215 (507)
T ss_pred HHHHHhh------cCCCEEEEEEeCChHHhhHHHHhcc---eEEEccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHH
Confidence 5555443 3455888888888999999999844 5789999999999999999998776553 45568889
Q ss_pred HHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 510 AELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 510 A~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
+..+.| +.+++.+++..++.++... ...||.+++.+.+...
T Consensus 216 a~~s~G-slR~al~~Ldkai~~~~~~-~~~It~~~V~~llg~~ 256 (507)
T PRK06645 216 AYKSEG-SARDAVSILDQAASMSAKS-DNIISPQVINQMLGLV 256 (507)
T ss_pred HHHcCC-CHHHHHHHHHHHHHhhccC-CCCcCHHHHHHHHCCC
Confidence 998887 8899999998887665322 2369999999887665
No 69
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.71 E-value=6.3e-16 Score=170.27 Aligned_cols=216 Identities=23% Similarity=0.270 Sum_probs=150.0
Q ss_pred cccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC-----CCeEE
Q 043051 295 ISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAG-----VPFFA 369 (845)
Q Consensus 295 ~~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg-----~pfi~ 369 (845)
+|.+++.|.+|++++|++++++.|..++.. + .+.++||+||||||||++|+++++++. .+++.
T Consensus 4 ~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~---~---------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~ 71 (337)
T PRK12402 4 LWTEKYRPALLEDILGQDEVVERLSRAVDS---P---------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTE 71 (337)
T ss_pred chHHhhCCCcHHHhcCCHHHHHHHHHHHhC---C---------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEE
Confidence 567778999999999999998888776531 1 123699999999999999999999873 46788
Q ss_pred eechhHHHhh-------------hhh-------hhhhHHHHHHHHHhc-----CCcEEEEcccchhccCCCCCCCCCCch
Q 043051 370 ANGTDFVEMF-------------VGV-------AASRVKDLFASARSF-----APSIIFIDEIDAIGSKRGGPDIGGGGA 424 (845)
Q Consensus 370 vs~sdf~~~~-------------vG~-------~~~~vr~lF~~A~~~-----aP~ILfIDEIDaL~~~R~~~~~~~~~~ 424 (845)
++++++.... .+. ....++.+....... .+.+|+|||+|.+. .
T Consensus 72 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~------------~ 139 (337)
T PRK12402 72 FNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR------------E 139 (337)
T ss_pred echhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC------------H
Confidence 8988764321 111 122334443333222 24699999999882 2
Q ss_pred HHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhh
Q 043051 425 EREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDV 504 (845)
Q Consensus 425 e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~ 504 (845)
..++.|..+++... .. ..+|.+|+.+..+.+.|.+ |+ ..+.+.+|+.++...+++..+...+... ++.
T Consensus 140 ~~~~~L~~~le~~~-----~~-~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~---~~~ 207 (337)
T PRK12402 140 DAQQALRRIMEQYS-----RT-CRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDY---DDD 207 (337)
T ss_pred HHHHHHHHHHHhcc-----CC-CeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCC---CHH
Confidence 34556666665531 22 3455566666677788888 44 5789999999999999999888776654 466
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 505 LLQEIAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 505 dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
.++.++..+.| +++.+++.....+. +...||.+++.+++...
T Consensus 208 al~~l~~~~~g----dlr~l~~~l~~~~~--~~~~It~~~v~~~~~~~ 249 (337)
T PRK12402 208 GLELIAYYAGG----DLRKAILTLQTAAL--AAGEITMEAAYEALGDV 249 (337)
T ss_pred HHHHHHHHcCC----CHHHHHHHHHHHHH--cCCCCCHHHHHHHhCCC
Confidence 78888888754 55555665554442 22479999999987654
No 70
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.71 E-value=4.1e-16 Score=184.38 Aligned_cols=208 Identities=16% Similarity=0.175 Sum_probs=155.8
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVP----------- 366 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~p----------- 366 (845)
+++++.+|+||+|++.+++.|...+.. .+.+..+||+||+|||||++|+++|+.+++.
T Consensus 8 ~KyRP~~f~divGQe~vv~~L~~~l~~-----------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 8 RKWRPQTFAEVVGQEHVLTALANALDL-----------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 457899999999999999988776643 2346678999999999999999999998763
Q ss_pred -------------eEEeechhHHHhhhhhhhhhHHHHHHHHHh----cCCcEEEEcccchhccCCCCCCCCCCchHHHHH
Q 043051 367 -------------FFAANGTDFVEMFVGVAASRVKDLFASARS----FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQG 429 (845)
Q Consensus 367 -------------fi~vs~sdf~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~ 429 (845)
++.+++++ ..+...+|++.+.+.. ....|+||||+|.| +....+.
T Consensus 77 ~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L------------s~~a~NA 138 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML------------SRHSFNA 138 (647)
T ss_pred HHHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC------------CHHHHHH
Confidence 22222221 1234567777766543 12359999999999 3456667
Q ss_pred HHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHH
Q 043051 430 LLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEI 509 (845)
Q Consensus 430 L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~L 509 (845)
|+..|++ .++++++|.+|+.+..|.+.++++| .++.|..++.++..+.|+..+...++.. .+..+..|
T Consensus 139 LLKtLEE------Pp~~v~FIL~Tt~~~kLl~TI~SRC---~~~~f~~Ls~~ei~~~L~~il~~e~i~~---e~~aL~~I 206 (647)
T PRK07994 139 LLKTLEE------PPEHVKFLLATTDPQKLPVTILSRC---LQFHLKALDVEQIRQQLEHILQAEQIPF---EPRALQLL 206 (647)
T ss_pred HHHHHHc------CCCCeEEEEecCCccccchHHHhhh---eEeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHH
Confidence 7777766 4556888888999999999999944 7899999999999999998887665543 45668889
Q ss_pred HHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Q 043051 510 AELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKR 551 (845)
Q Consensus 510 A~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r 551 (845)
+..+.| +.++..+++..|... +...|+.+++...+..
T Consensus 207 a~~s~G-s~R~Al~lldqaia~----~~~~it~~~v~~~lg~ 243 (647)
T PRK07994 207 ARAADG-SMRDALSLTDQAIAS----GNGQVTTDDVSAMLGT 243 (647)
T ss_pred HHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHcc
Confidence 999888 888888888776432 2345888888876653
No 71
>PLN03025 replication factor C subunit; Provisional
Probab=99.70 E-value=3.6e-16 Score=172.37 Aligned_cols=208 Identities=21% Similarity=0.215 Sum_probs=146.4
Q ss_pred cccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC-----CCeEE
Q 043051 295 ISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAG-----VPFFA 369 (845)
Q Consensus 295 ~~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg-----~pfi~ 369 (845)
.|.++++|.+|+|++|++++.+.|+.++.. . .. .++||+||||||||++|+++|+++. ..++.
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~---~--------~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~e 69 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARD---G--------NM-PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLE 69 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHhc---C--------CC-ceEEEECCCCCCHHHHHHHHHHHHhcccCccceee
Confidence 466789999999999999998888776532 1 12 2599999999999999999999973 24667
Q ss_pred eechhHHHhhhhhhhhhHHHHHHHHHh-------cCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcc
Q 043051 370 ANGTDFVEMFVGVAASRVKDLFASARS-------FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKV 442 (845)
Q Consensus 370 vs~sdf~~~~vG~~~~~vr~lF~~A~~-------~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~ 442 (845)
+++++... ...+++....... ....||+|||+|.+ +...++.|...++..
T Consensus 70 ln~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~l------------t~~aq~aL~~~lE~~----- 126 (319)
T PLN03025 70 LNASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSM------------TSGAQQALRRTMEIY----- 126 (319)
T ss_pred eccccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhc------------CHHHHHHHHHHHhcc-----
Confidence 77765321 1233433322111 13569999999999 234567777776542
Q ss_pred cCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHH
Q 043051 443 STSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQ 522 (845)
Q Consensus 443 ~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~ 522 (845)
+....+|.+||.+..+.++|+++| ..+.|+.|+.++....++..++..++.. .+..+..++..+.| |++
T Consensus 127 -~~~t~~il~~n~~~~i~~~L~SRc---~~i~f~~l~~~~l~~~L~~i~~~egi~i---~~~~l~~i~~~~~g----DlR 195 (319)
T PLN03025 127 -SNTTRFALACNTSSKIIEPIQSRC---AIVRFSRLSDQEILGRLMKVVEAEKVPY---VPEGLEAIIFTADG----DMR 195 (319)
T ss_pred -cCCceEEEEeCCccccchhHHHhh---hcccCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCC----CHH
Confidence 223556778888888989999944 4789999999999999999988777654 35567888887665 666
Q ss_pred HHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 043051 523 NILNEAGILTARKDLDYIGQEELLEALK 550 (845)
Q Consensus 523 ~LvneAal~A~r~~~~~It~edl~~Al~ 550 (845)
.++|.....+. +...|+.+++.+...
T Consensus 196 ~aln~Lq~~~~--~~~~i~~~~v~~~~~ 221 (319)
T PLN03025 196 QALNNLQATHS--GFGFVNQENVFKVCD 221 (319)
T ss_pred HHHHHHHHHHh--cCCCCCHHHHHHHcC
Confidence 66655543222 335688888876543
No 72
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.70 E-value=2.4e-16 Score=190.32 Aligned_cols=226 Identities=21% Similarity=0.267 Sum_probs=161.0
Q ss_pred CCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeEEe
Q 043051 301 TGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA----------GVPFFAA 370 (845)
Q Consensus 301 ~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el----------g~pfi~v 370 (845)
..-.++.++|.++..+.+.+++.. . .+.++||+||||||||++|+++|... +..++.+
T Consensus 181 ~~g~~~~liGR~~ei~~~i~iL~r---~---------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l 248 (758)
T PRK11034 181 RVGGIDPLIGREKELERAIQVLCR---R---------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_pred HcCCCCcCcCCCHHHHHHHHHHhc---c---------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec
Confidence 345688999999776666554432 1 14578999999999999999999864 4556666
Q ss_pred echhHH--HhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEE
Q 043051 371 NGTDFV--EMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVL 448 (845)
Q Consensus 371 s~sdf~--~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~Vi 448 (845)
+.+.+. ..|.|..+.+++.+|..+....++||||||||.|.+.++. .++..+..+.|..++. .+.+.
T Consensus 249 ~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~---~~g~~d~~nlLkp~L~--------~g~i~ 317 (758)
T PRK11034 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA---SGGQVDAANLIKPLLS--------SGKIR 317 (758)
T ss_pred cHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC---CCcHHHHHHHHHHHHh--------CCCeE
Confidence 665555 4678888999999999998888899999999999765421 1222333344444432 35699
Q ss_pred EEEEcCCCC-----CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccc-hhhhhhHHHHHHHHcc-----CCc
Q 043051 449 VIGATNRLD-----ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRS-EEEKDVLLQEIAELTE-----DFT 517 (845)
Q Consensus 449 VIaaTN~pd-----~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~-~~~~d~dl~~LA~~t~-----GfS 517 (845)
||++||.++ .+|++|.| ||+ .|.|+.|+.+++.+||+.+........ -...+..+..++..+. .+-
T Consensus 318 vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~l 394 (758)
T PRK11034 318 VIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHL 394 (758)
T ss_pred EEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccC
Confidence 999999875 46999999 996 799999999999999997665432210 0113444554444333 345
Q ss_pred HHHHHHHHHHHHHHHH----HcCCCccCHHHHHHHHHhc
Q 043051 518 GAELQNILNEAGILTA----RKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 518 gaDL~~LvneAal~A~----r~~~~~It~edl~~Al~r~ 552 (845)
+.....++++|+.... ......|+.+|+.+.+.+.
T Consensus 395 PdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~ 433 (758)
T PRK11034 395 PDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARI 433 (758)
T ss_pred hHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHHH
Confidence 6688999999975442 2233468999999999887
No 73
>PRK06893 DNA replication initiation factor; Validated
Probab=99.70 E-value=1.1e-15 Score=160.89 Aligned_cols=213 Identities=13% Similarity=0.160 Sum_probs=144.5
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHH
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFV 376 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~ 376 (845)
.+..+|++++|.+... .+..+.... . . .....++||||||||||+|++|+|+++ +....+++..+..
T Consensus 10 ~~~~~fd~f~~~~~~~-~~~~~~~~~---~---~---~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~ 79 (229)
T PRK06893 10 IDDETLDNFYADNNLL-LLDSLRKNF---I---D---LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ 79 (229)
T ss_pred CCcccccccccCChHH-HHHHHHHHh---h---c---cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh
Confidence 4678999999876432 111221111 1 1 112358999999999999999999886 4455555554321
Q ss_pred HhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCC
Q 043051 377 EMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRL 456 (845)
Q Consensus 377 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~p 456 (845)
. ....+++..+ ...+|+||||+.+.. ....+..|..++..+.. ..+.++|++++..|
T Consensus 80 ~--------~~~~~~~~~~--~~dlLilDDi~~~~~----------~~~~~~~l~~l~n~~~~---~~~~illits~~~p 136 (229)
T PRK06893 80 Y--------FSPAVLENLE--QQDLVCLDDLQAVIG----------NEEWELAIFDLFNRIKE---QGKTLLLISADCSP 136 (229)
T ss_pred h--------hhHHHHhhcc--cCCEEEEeChhhhcC----------ChHHHHHHHHHHHHHHH---cCCcEEEEeCCCCh
Confidence 1 1112333332 347999999999843 23345567777776421 22335566666677
Q ss_pred CCCC---hhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 043051 457 DILD---PALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTA 533 (845)
Q Consensus 457 d~LD---pALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~ 533 (845)
..++ +.|.++.+++..+.++.|+.++|.+||+..+...++.. ++..++.|++...| +.+.+.++++.....+.
T Consensus 137 ~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l---~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~ 212 (229)
T PRK06893 137 HALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIEL---SDEVANFLLKRLDR-DMHTLFDALDLLDKASL 212 (229)
T ss_pred HHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 7664 89999777788999999999999999999887766654 56678899999887 88888888887643333
Q ss_pred HcCCCccCHHHHHHHHH
Q 043051 534 RKDLDYIGQEELLEALK 550 (845)
Q Consensus 534 r~~~~~It~edl~~Al~ 550 (845)
..+ ..||...+++++.
T Consensus 213 ~~~-~~it~~~v~~~L~ 228 (229)
T PRK06893 213 QAQ-RKLTIPFVKEILG 228 (229)
T ss_pred hcC-CCCCHHHHHHHhc
Confidence 333 4699999888763
No 74
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.70 E-value=2.2e-15 Score=171.27 Aligned_cols=222 Identities=22% Similarity=0.316 Sum_probs=156.1
Q ss_pred CCCCCcccc-cccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeEEeech
Q 043051 300 TTGVTFDDF-AGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA-----GVPFFAANGT 373 (845)
Q Consensus 300 ~~~~tF~dV-vG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el-----g~pfi~vs~s 373 (845)
.+..+|+++ +|.+ -......+..+..++. ....+++||||||||||+|++++++++ +..++++++.
T Consensus 104 ~~~~tfd~fi~g~~-n~~a~~~~~~~~~~~~-------~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~ 175 (405)
T TIGR00362 104 NPKYTFDNFVVGKS-NRLAHAAALAVAENPG-------KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE 175 (405)
T ss_pred CCCCcccccccCCc-HHHHHHHHHHHHhCcC-------ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH
Confidence 456789994 4533 2223333333333321 234579999999999999999999887 6789999999
Q ss_pred hHHHhhhhhhh-hhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEE
Q 043051 374 DFVEMFVGVAA-SRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGA 452 (845)
Q Consensus 374 df~~~~vG~~~-~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaa 452 (845)
+|...+..... ..+..+.+..+ .+.+|+|||||.+.++ ...+..+..++..+-. .+..+||++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~----------~~~~~~l~~~~n~~~~----~~~~iiits 239 (405)
T TIGR00362 176 KFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGK----------ERTQEEFFHTFNALHE----NGKQIVLTS 239 (405)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCC----------HHHHHHHHHHHHHHHH----CCCCEEEec
Confidence 98776554322 12223222222 3579999999998432 2234556666665421 233566666
Q ss_pred cCCCCC---CChhhhccCccc--EEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHH
Q 043051 453 TNRLDI---LDPALLRKGRFD--KIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNE 527 (845)
Q Consensus 453 TN~pd~---LDpALlRpgRFd--r~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~Lvne 527 (845)
+..|.. +++.|.+ ||. ..+.++.|+.++|.+||+..+...++.. ++..++.||....+ +.++|..+++.
T Consensus 240 ~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l---~~e~l~~ia~~~~~-~~r~l~~~l~~ 313 (405)
T TIGR00362 240 DRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLEL---PDEVLEFIAKNIRS-NVRELEGALNR 313 (405)
T ss_pred CCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhcCC-CHHHHHHHHHH
Confidence 666654 5688988 775 4799999999999999999998776654 56678999998887 88999999998
Q ss_pred HHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 528 AGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 528 Aal~A~r~~~~~It~edl~~Al~r~ 552 (845)
....|...+ ..||.+.+.+++...
T Consensus 314 l~~~a~~~~-~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 314 LLAYASLTG-KPITLELAKEALKDL 337 (405)
T ss_pred HHHHHHHhC-CCCCHHHHHHHHHHh
Confidence 877776554 669999999999865
No 75
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.69 E-value=6.1e-16 Score=185.95 Aligned_cols=215 Identities=23% Similarity=0.301 Sum_probs=150.0
Q ss_pred cccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechh
Q 043051 295 ISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTD 374 (845)
Q Consensus 295 ~~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sd 374 (845)
...++.++.+|+|++|++.+......+...+.... ..++|||||||||||++|+++|+..+.+|+.++++.
T Consensus 17 PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~---------~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~ 87 (725)
T PRK13341 17 PLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADR---------VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVL 87 (725)
T ss_pred ChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCC---------CceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhh
Confidence 34456789999999999998865333433333211 347999999999999999999999999999988763
Q ss_pred HHHhhhhhhhhhHHHHHHHHHh-----cCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEE
Q 043051 375 FVEMFVGVAASRVKDLFASARS-----FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLV 449 (845)
Q Consensus 375 f~~~~vG~~~~~vr~lF~~A~~-----~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViV 449 (845)
. +...++..++.+.. ....+|||||||.+ +...++.|+..+.. +.+++
T Consensus 88 ~-------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~L------------n~~qQdaLL~~lE~--------g~IiL 140 (725)
T PRK13341 88 A-------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRF------------NKAQQDALLPWVEN--------GTITL 140 (725)
T ss_pred h-------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhC------------CHHHHHHHHHHhcC--------ceEEE
Confidence 1 12234444444421 23569999999998 23445555544332 44788
Q ss_pred EEEcC--CCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhh-------hcccchhhhhhHHHHHHHHccCCcHHH
Q 043051 450 IGATN--RLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARN-------KYFRSEEEKDVLLQEIAELTEDFTGAE 520 (845)
Q Consensus 450 IaaTN--~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~-------~~l~~~~~~d~dl~~LA~~t~GfSgaD 520 (845)
|++|+ ....+++++++++ ..+.|++++.+++..+++..+.. ..+. .++..++.|++.+.| ..+.
T Consensus 141 I~aTTenp~~~l~~aL~SR~---~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~---I~deaL~~La~~s~G-D~R~ 213 (725)
T PRK13341 141 IGATTENPYFEVNKALVSRS---RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVD---LEPEAEKHLVDVANG-DARS 213 (725)
T ss_pred EEecCCChHhhhhhHhhccc---cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccC---CCHHHHHHHHHhCCC-CHHH
Confidence 87764 3356899999954 46899999999999999988863 1222 245668889998876 6778
Q ss_pred HHHHHHHHHHHHHHcCC--CccCHHHHHHHHHhc
Q 043051 521 LQNILNEAGILTARKDL--DYIGQEELLEALKRQ 552 (845)
Q Consensus 521 L~~LvneAal~A~r~~~--~~It~edl~~Al~r~ 552 (845)
+.++++.|+..+...+. ..|+.+++.+++.+.
T Consensus 214 lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 214 LLNALELAVESTPPDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred HHHHHHHHHHhcccCCCCceeccHHHHHHHHHHh
Confidence 88888776643322221 238889999988775
No 76
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=1e-15 Score=183.58 Aligned_cols=212 Identities=16% Similarity=0.140 Sum_probs=150.7
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeE-------Ee
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFF-------AA 370 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi-------~v 370 (845)
+++++.+|+||+|++.+++.|..++.. .++|..+||+||||||||++|+++|+.+++.-. .+
T Consensus 8 eKyRP~tFddIIGQe~Iv~~LknaI~~-----------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 8 RKWRPATFEQMVGQSHVLHALTNALTQ-----------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 458899999999999999988776542 135677899999999999999999999876411 00
Q ss_pred -echhHHHh-------hh---hhhhhhHHHHHHHHHh----cCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHH
Q 043051 371 -NGTDFVEM-------FV---GVAASRVKDLFASARS----FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILT 435 (845)
Q Consensus 371 -s~sdf~~~-------~v---G~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~ 435 (845)
+|-.+.+. +- ..+...+|.+.+.+.. ....|+||||+|.| +....+.|+..|+
T Consensus 77 ~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L------------T~eAqNALLKtLE 144 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML------------SRSSFNALLKTLE 144 (944)
T ss_pred hHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc------------CHHHHHHHHHHHh
Confidence 01111100 00 1233456776665532 12359999999999 3455666666666
Q ss_pred hhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccC
Q 043051 436 EMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTED 515 (845)
Q Consensus 436 emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~G 515 (845)
+ .++++++|.+|+.+..|.+.|+++| .++.|..++.++..+.|+..+...++.. .+..+..|++.+.|
T Consensus 145 E------PP~~vrFILaTTe~~kLl~TIlSRC---q~f~fkpLs~eEI~~~L~~il~~EgI~~---edeAL~lIA~~S~G 212 (944)
T PRK14949 145 E------PPEHVKFLLATTDPQKLPVTVLSRC---LQFNLKSLTQDEIGTQLNHILTQEQLPF---EAEALTLLAKAANG 212 (944)
T ss_pred c------cCCCeEEEEECCCchhchHHHHHhh---eEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCC
Confidence 5 3456888888988999999999955 6899999999999999998887655443 45678889999888
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 043051 516 FTGAELQNILNEAGILTARKDLDYIGQEELLEAL 549 (845)
Q Consensus 516 fSgaDL~~LvneAal~A~r~~~~~It~edl~~Al 549 (845)
+.+++.+++..+... +...++.+.+.+.+
T Consensus 213 -d~R~ALnLLdQala~----~~~~It~~~V~~ll 241 (944)
T PRK14949 213 -SMRDALSLTDQAIAF----GGGQVMLTQVQTML 241 (944)
T ss_pred -CHHHHHHHHHHHHHh----cCCcccHHHHHHHh
Confidence 788888888876522 22346666655444
No 77
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=7.7e-16 Score=177.39 Aligned_cols=209 Identities=19% Similarity=0.248 Sum_probs=157.4
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC------------
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGV------------ 365 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~------------ 365 (845)
.+++|.+|+||+|++.+++.|...+.. .++|.++||+||||||||++|+.+|+.+++
T Consensus 5 ~KyRP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 5 LKYRPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 358899999999999999888765532 245789999999999999999999997643
Q ss_pred ------------CeEEeechhHHHhhhhhhhhhHHHHHHHHHhc----CCcEEEEcccchhccCCCCCCCCCCchHHHHH
Q 043051 366 ------------PFFAANGTDFVEMFVGVAASRVKDLFASARSF----APSIIFIDEIDAIGSKRGGPDIGGGGAEREQG 429 (845)
Q Consensus 366 ------------pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~ 429 (845)
.++.+++++ ..+...+|.+.+.+... ...|++|||+|.+ +....+.
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~L------------s~~A~Na 135 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHML------------SNSAFNA 135 (491)
T ss_pred HHHHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhC------------CHHHHHH
Confidence 334444432 12456688888777432 2469999999998 2334455
Q ss_pred HHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHH
Q 043051 430 LLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEI 509 (845)
Q Consensus 430 L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~L 509 (845)
|+..|++ .+..+++|.+|+.++.+.+.++++| ..+.|..++.++..+.+...+...+... ++..+..|
T Consensus 136 LLK~LEe------Pp~~v~fIlatte~~Kl~~tI~SRc---~~~~f~~l~~~el~~~L~~ia~~Egi~i---~~eAL~lI 203 (491)
T PRK14964 136 LLKTLEE------PAPHVKFILATTEVKKIPVTIISRC---QRFDLQKIPTDKLVEHLVDIAKKENIEH---DEESLKLI 203 (491)
T ss_pred HHHHHhC------CCCCeEEEEEeCChHHHHHHHHHhh---eeeecccccHHHHHHHHHHHHHHcCCCC---CHHHHHHH
Confidence 5555544 3455888888888899999999955 5789999999999999999888776654 45668899
Q ss_pred HHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 510 AELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 510 A~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
++.+.| +.+++.+++..+..++ ...||.+++.+.+...
T Consensus 204 a~~s~G-slR~alslLdqli~y~----~~~It~e~V~~llg~~ 241 (491)
T PRK14964 204 AENSSG-SMRNALFLLEQAAIYS----NNKISEKSVRDLLGCV 241 (491)
T ss_pred HHHcCC-CHHHHHHHHHHHHHhc----CCCCCHHHHHHHHccC
Confidence 999877 8888888888876553 2469999998876544
No 78
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.68 E-value=2.8e-15 Score=172.14 Aligned_cols=225 Identities=15% Similarity=0.220 Sum_probs=157.0
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeEEeechh
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA-----GVPFFAANGTD 374 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el-----g~pfi~vs~sd 374 (845)
.+..||++++..+........+.....++.. +.+++||||||||||+|++++|+++ +..++++++.+
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~~~--------~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~ 170 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNPGR--------YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCcCC--------CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 5678999988444444444444444433321 3569999999999999999999986 46789999999
Q ss_pred HHHhhhhhh-hhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEc
Q 043051 375 FVEMFVGVA-ASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGAT 453 (845)
Q Consensus 375 f~~~~vG~~-~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaT 453 (845)
|...+...- ...+.. |.......+.+|+|||++.+.++ ...+..+..++..+. ..++.+||++.
T Consensus 171 f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~----------~~~q~elf~~~n~l~----~~~k~iIitsd 235 (440)
T PRK14088 171 FLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK----------TGVQTELFHTFNELH----DSGKQIVICSD 235 (440)
T ss_pred HHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc----------HHHHHHHHHHHHHHH----HcCCeEEEECC
Confidence 887654322 223333 32222235789999999998432 122344555555432 12335666666
Q ss_pred CCCCC---CChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHH
Q 043051 454 NRLDI---LDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGI 530 (845)
Q Consensus 454 N~pd~---LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal 530 (845)
+.|.. +++.+.++......+.+++||.+.|.+|++..+...++.. ++..++.||....| +.++|..+++....
T Consensus 236 ~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l---~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~ 311 (440)
T PRK14088 236 REPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGEL---PEEVLNFVAENVDD-NLRRLRGAIIKLLV 311 (440)
T ss_pred CCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHhcccc-CHHHHHHHHHHHHH
Confidence 66665 4678888333356889999999999999999988766554 45668999999887 88999999998876
Q ss_pred HHHHcCCCccCHHHHHHHHHhc
Q 043051 531 LTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 531 ~A~r~~~~~It~edl~~Al~r~ 552 (845)
.+...+ ..||.+.+.+++...
T Consensus 312 ~~~~~~-~~it~~~a~~~L~~~ 332 (440)
T PRK14088 312 YKETTG-EEVDLKEAILLLKDF 332 (440)
T ss_pred HHHHhC-CCCCHHHHHHHHHHH
Confidence 666655 569999999999866
No 79
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.68 E-value=2.9e-15 Score=164.22 Aligned_cols=211 Identities=21% Similarity=0.289 Sum_probs=143.1
Q ss_pred cccccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeec
Q 043051 293 KFISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANG 372 (845)
Q Consensus 293 ~~~~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~ 372 (845)
...|.++++|.+|+|++|++++++.+...+.. ...|..+||+||||+|||++|++++++.+.+++.+++
T Consensus 8 ~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~ 76 (316)
T PHA02544 8 EFMWEQKYRPSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNG 76 (316)
T ss_pred CCcceeccCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEecc
Confidence 45677889999999999999999988877641 2346678889999999999999999999999999998
Q ss_pred hhHHHhhhhhhhhhHHHHHHHHH-hcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEE
Q 043051 373 TDFVEMFVGVAASRVKDLFASAR-SFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIG 451 (845)
Q Consensus 373 sdf~~~~vG~~~~~vr~lF~~A~-~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIa 451 (845)
++ . . +......+........ ...+++|+|||+|.+. ..+.+..|..++++. ..++.+|+
T Consensus 77 ~~-~-~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~~L~~~le~~------~~~~~~Il 136 (316)
T PHA02544 77 SD-C-R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG-----------LADAQRHLRSFMEAY------SKNCSFII 136 (316)
T ss_pred Cc-c-c-HHHHHHHHHHHHHhhcccCCCeEEEEECccccc-----------CHHHHHHHHHHHHhc------CCCceEEE
Confidence 86 1 1 1111122222211111 1246899999999872 123445566666553 23478888
Q ss_pred EcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhh-------cccchhhhhhHHHHHHHHccCCcHHHHHHH
Q 043051 452 ATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNK-------YFRSEEEKDVLLQEIAELTEDFTGAELQNI 524 (845)
Q Consensus 452 aTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~-------~l~~~~~~d~dl~~LA~~t~GfSgaDL~~L 524 (845)
+||.+..+++++++ ||. .+.++.|+.+++.++++..+... +... .+..+..++....| |++.+
T Consensus 137 t~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i---~~~al~~l~~~~~~----d~r~~ 206 (316)
T PHA02544 137 TANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEV---DMKVLAALVKKNFP----DFRRT 206 (316)
T ss_pred EcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHhcCC----CHHHH
Confidence 99999999999999 664 78999999999998877544332 2211 23345666665443 56666
Q ss_pred HHHHHHHHHHcCCCccCHHHHHH
Q 043051 525 LNEAGILTARKDLDYIGQEELLE 547 (845)
Q Consensus 525 vneAal~A~r~~~~~It~edl~~ 547 (845)
++.....+. ...++.+++..
T Consensus 207 l~~l~~~~~---~~~i~~~~l~~ 226 (316)
T PHA02544 207 INELQRYAS---TGKIDAGILSE 226 (316)
T ss_pred HHHHHHHHc---cCCCCHHHHHH
Confidence 665544432 23566665544
No 80
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.68 E-value=1.1e-15 Score=187.46 Aligned_cols=224 Identities=21% Similarity=0.285 Sum_probs=157.7
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeEE
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA----------GVPFFA 369 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el----------g~pfi~ 369 (845)
.++-++++++|+++. +..++..|.... ..+++|+||||||||++|+.+|+.+ +..++.
T Consensus 181 ~r~~~ld~~iGr~~e---i~~~i~~l~r~~---------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 181 AREGKIDPVLGRDDE---IRQMIDILLRRR---------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred hcCCCCCcccCCHHH---HHHHHHHHhcCC---------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 457789999999985 445554443322 2478999999999999999999876 245777
Q ss_pred eechhHH--HhhhhhhhhhHHHHHHHHHh-cCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCc
Q 043051 370 ANGTDFV--EMFVGVAASRVKDLFASARS-FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQ 446 (845)
Q Consensus 370 vs~sdf~--~~~vG~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ 446 (845)
++.+.+. ..+.|..+.+++.+|+.++. ..++||||||||.+.+.++.. + .....+.|...| ..+.
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~---~-~~d~~n~Lkp~l--------~~G~ 316 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA---G-QGDAANLLKPAL--------ARGE 316 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc---c-cccHHHHhhHHh--------hCCC
Confidence 7777765 36788899999999999865 357899999999997654311 1 112223333333 2356
Q ss_pred EEEEEEcCCCC-----CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhccc-chhhhhhHHHHHHHHccCCc---
Q 043051 447 VLVIGATNRLD-----ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFR-SEEEKDVLLQEIAELTEDFT--- 517 (845)
Q Consensus 447 ViVIaaTN~pd-----~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~-~~~~~d~dl~~LA~~t~GfS--- 517 (845)
+.+|+||+..+ .+|+||.| ||. .|.|+.|+.+++.+||+.+.+..... .-...+..+..++..+.+|-
T Consensus 317 l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r 393 (852)
T TIGR03345 317 LRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGR 393 (852)
T ss_pred eEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccc
Confidence 99999998754 38999999 995 89999999999999986555432110 01125677888888887664
Q ss_pred --HHHHHHHHHHHHHHHHH-cCCCccCHHHHHHHHH
Q 043051 518 --GAELQNILNEAGILTAR-KDLDYIGQEELLEALK 550 (845)
Q Consensus 518 --gaDL~~LvneAal~A~r-~~~~~It~edl~~Al~ 550 (845)
+.....++++|+..... .....+..+++...+.
T Consensus 394 ~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~ 429 (852)
T TIGR03345 394 QLPDKAVSLLDTACARVALSQNATPAALEDLRRRIA 429 (852)
T ss_pred cCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence 45777889988655543 3444555566655543
No 81
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=9.5e-16 Score=180.81 Aligned_cols=215 Identities=18% Similarity=0.187 Sum_probs=156.4
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEE--eech--
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFA--ANGT-- 373 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~--vs~s-- 373 (845)
.++++.+|+||+|++.+++.|...+.. .+++.++||+||+|||||++|+++|+.++++-.. ..|.
T Consensus 8 rKYRP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C 76 (709)
T PRK08691 8 RKWRPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC 76 (709)
T ss_pred HHhCCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Confidence 458899999999999999988887652 2457889999999999999999999988653110 0010
Q ss_pred ------------hHHHh--hhhhhhhhHHHHHHHHHh----cCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHH
Q 043051 374 ------------DFVEM--FVGVAASRVKDLFASARS----FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILT 435 (845)
Q Consensus 374 ------------df~~~--~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~ 435 (845)
++.+. ..+.+...+|++++.+.. ....||||||+|.+ +....+.|+..|+
T Consensus 77 ~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L------------s~~A~NALLKtLE 144 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML------------SKSAFNAMLKTLE 144 (709)
T ss_pred HHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc------------CHHHHHHHHHHHH
Confidence 11000 012334567888876532 12369999999988 2334455555555
Q ss_pred hhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccC
Q 043051 436 EMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTED 515 (845)
Q Consensus 436 emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~G 515 (845)
+ .++.+.+|.+||.+..+.+.+++ |+ ..+.|..++.++..+.|+..+...++.. .+..+..|++.+.|
T Consensus 145 E------Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~i---d~eAL~~Ia~~A~G 212 (709)
T PRK08691 145 E------PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAY---EPPALQLLGRAAAG 212 (709)
T ss_pred h------CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHhCC
Confidence 5 23457888888889999999988 44 4688889999999999999998776654 45678899998877
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 516 FTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 516 fSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
+.+++.+++..+..+ +...|+.+++...+...
T Consensus 213 -slRdAlnLLDqaia~----g~g~It~e~V~~lLG~~ 244 (709)
T PRK08691 213 -SMRDALSLLDQAIAL----GSGKVAENDVRQMIGAV 244 (709)
T ss_pred -CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHccc
Confidence 888898888877644 23568888888877655
No 82
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=1.5e-15 Score=179.17 Aligned_cols=210 Identities=14% Similarity=0.177 Sum_probs=155.0
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC----------
Q 043051 297 AEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVP---------- 366 (845)
Q Consensus 297 ~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~p---------- 366 (845)
.+++++.+|+||+|++.+++.|...+..- +.|..+||+||+|||||++|+++|+.+++.
T Consensus 7 a~KyRP~~f~dviGQe~vv~~L~~~l~~~-----------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~ 75 (618)
T PRK14951 7 ARKYRPRSFSEMVGQEHVVQALTNALTQQ-----------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA 75 (618)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC
Confidence 35688999999999999999888776532 346788999999999999999999988651
Q ss_pred -------------------eEEeechhHHHhhhhhhhhhHHHHHHHHHhcC----CcEEEEcccchhccCCCCCCCCCCc
Q 043051 367 -------------------FFAANGTDFVEMFVGVAASRVKDLFASARSFA----PSIIFIDEIDAIGSKRGGPDIGGGG 423 (845)
Q Consensus 367 -------------------fi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~a----P~ILfIDEIDaL~~~R~~~~~~~~~ 423 (845)
++.+++++ ..+...+|++.+.+.... -.|++|||+|.| +
T Consensus 76 ~pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~L------------s 137 (618)
T PRK14951 76 TPCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHML------------T 137 (618)
T ss_pred CCCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhC------------C
Confidence 22222211 123456788887764311 259999999999 2
Q ss_pred hHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhh
Q 043051 424 AEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKD 503 (845)
Q Consensus 424 ~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d 503 (845)
....+.|+..|++ .+..+++|.+|+.+..+.+.++++| .++.|..++.++..+.|+..+...++.. .+
T Consensus 138 ~~a~NaLLKtLEE------PP~~~~fIL~Ttd~~kil~TIlSRc---~~~~f~~Ls~eei~~~L~~i~~~egi~i---e~ 205 (618)
T PRK14951 138 NTAFNAMLKTLEE------PPEYLKFVLATTDPQKVPVTVLSRC---LQFNLRPMAPETVLEHLTQVLAAENVPA---EP 205 (618)
T ss_pred HHHHHHHHHhccc------CCCCeEEEEEECCchhhhHHHHHhc---eeeecCCCCHHHHHHHHHHHHHHcCCCC---CH
Confidence 3344455555444 3455788888888888888999955 6899999999999999998887776654 45
Q ss_pred hHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 504 VLLQEIAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 504 ~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
..+..|++.+.| +.+++.+++..+... +...|+.+++.+.+...
T Consensus 206 ~AL~~La~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~Lg~~ 249 (618)
T PRK14951 206 QALRLLARAARG-SMRDALSLTDQAIAF----GSGQLQEAAVRQMLGSV 249 (618)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHcCC
Confidence 668899998887 888888888766543 34569999998877544
No 83
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.67 E-value=5.2e-15 Score=165.18 Aligned_cols=225 Identities=20% Similarity=0.247 Sum_probs=150.4
Q ss_pred CcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC---------CCeEEeechh
Q 043051 304 TFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAG---------VPFFAANGTD 374 (845)
Q Consensus 304 tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg---------~pfi~vs~sd 374 (845)
..++++|.++..+.|...+..... | ..|.+++|+||||||||++++++++++. +++++++|..
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~-------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR-------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc-------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 345899999888877776654211 1 2356899999999999999999987652 5788888864
Q ss_pred HHH----------hhh--hh-------h-hhhHHHHHHHHHh-cCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHH
Q 043051 375 FVE----------MFV--GV-------A-ASRVKDLFASARS-FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQI 433 (845)
Q Consensus 375 f~~----------~~v--G~-------~-~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qL 433 (845)
... ... |. . ...+..+++.... ..+.||+|||+|.+.+. . +..+.++
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~---------~---~~~L~~l 152 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD---------D---DDLLYQL 152 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC---------C---cHHHHhH
Confidence 321 111 11 0 1123444444432 34679999999999521 0 1234455
Q ss_pred HHhhcCCcccCCcEEEEEEcCCCC---CCChhhhccCccc-EEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHH--
Q 043051 434 LTEMDGFKVSTSQVLVIGATNRLD---ILDPALLRKGRFD-KIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQ-- 507 (845)
Q Consensus 434 L~emdg~~~~~~~ViVIaaTN~pd---~LDpALlRpgRFd-r~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~-- 507 (845)
+...+.......++.+|+++|.++ .+++.+.+ ||. ..+.|++++.++..+|++..+.... ......+..++
T Consensus 153 ~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~-~~~~~~~~~l~~i 229 (365)
T TIGR02928 153 SRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAF-YDGVLDDGVIPLC 229 (365)
T ss_pred hccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhc-cCCCCChhHHHHH
Confidence 433111122335689999999886 47888887 774 6799999999999999998886311 11111233333
Q ss_pred -HHHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 508 -EIAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 508 -~LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
.++..+.| ..+.+.++|..|+..|..++...|+.+|+..|++..
T Consensus 230 ~~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 230 AALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 34445556 566777889999998988888899999999999877
No 84
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=3.3e-15 Score=175.97 Aligned_cols=209 Identities=22% Similarity=0.248 Sum_probs=155.0
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVP----------- 366 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~p----------- 366 (845)
.+++|.+|+||+|++.+++.|...+.. .+.+..+||+||+|||||++|+.+|+.+.++
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C 76 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC 76 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 347899999999999999988877653 2346789999999999999999999987542
Q ss_pred -------------eEEeechhHHHhhhhhhhhhHHHHHHHHHhc----CCcEEEEcccchhccCCCCCCCCCCchHHHHH
Q 043051 367 -------------FFAANGTDFVEMFVGVAASRVKDLFASARSF----APSIIFIDEIDAIGSKRGGPDIGGGGAEREQG 429 (845)
Q Consensus 367 -------------fi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~ 429 (845)
++.++++ .+.+...+|++.+.+... ...|++|||+|.|. ....+.
T Consensus 77 ~~C~~i~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt------------~~a~na 138 (559)
T PRK05563 77 EICKAITNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS------------TGAFNA 138 (559)
T ss_pred HHHHHHhcCCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHH
Confidence 2333322 123456788888876531 23599999999982 233444
Q ss_pred HHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHH
Q 043051 430 LLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEI 509 (845)
Q Consensus 430 L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~L 509 (845)
|+..|++ .+..+++|.+|+.++.+.+.+++ |. ..+.|..|+.++....++..+...++.. .+..+..+
T Consensus 139 LLKtLEe------pp~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i---~~~al~~i 206 (559)
T PRK05563 139 LLKTLEE------PPAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEY---EDEALRLI 206 (559)
T ss_pred HHHHhcC------CCCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHH
Confidence 4444433 34557888888889999999998 44 4688999999999999999888776654 34568888
Q ss_pred HHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 510 AELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 510 A~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
+..+.| +.+++.+++..+..+. ...||.+++.+.+...
T Consensus 207 a~~s~G-~~R~al~~Ldq~~~~~----~~~It~~~V~~vlg~~ 244 (559)
T PRK05563 207 ARAAEG-GMRDALSILDQAISFG----DGKVTYEDALEVTGSV 244 (559)
T ss_pred HHHcCC-CHHHHHHHHHHHHHhc----cCCCCHHHHHHHhCCC
Confidence 988877 8888888887775442 3569999998877555
No 85
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=5.4e-15 Score=171.91 Aligned_cols=208 Identities=20% Similarity=0.248 Sum_probs=150.1
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVP----------- 366 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~p----------- 366 (845)
.+++|.+|+||+|++.+++.|...+.. .+.|..+||+||||||||++|+++|+.+.+.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 358899999999999999988887653 2356778999999999999999999988541
Q ss_pred ------------eEEeechhHHHhhhhhhhhhHHHHHHHHHh----cCCcEEEEcccchhccCCCCCCCCCCchHHHHHH
Q 043051 367 ------------FFAANGTDFVEMFVGVAASRVKDLFASARS----FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGL 430 (845)
Q Consensus 367 ------------fi~vs~sdf~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L 430 (845)
++.+++++ ..+...+|++.+.+.. ..+.||+|||+|.+. .. .+
T Consensus 75 sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls------------~~---a~ 133 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS------------KS---AF 133 (504)
T ss_pred hhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC------------HH---HH
Confidence 33333321 1234556676555533 235699999999872 22 34
Q ss_pred HHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHH
Q 043051 431 LQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIA 510 (845)
Q Consensus 431 ~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA 510 (845)
+.|+..++. ....+++|.+||.+..+.+.+.+++ ..+.|..|+.++..+.++..+...++.. .+..+..++
T Consensus 134 naLLk~LEe---p~~~t~~Il~t~~~~kl~~~I~SRc---~~~~f~~ls~~el~~~L~~i~~~egi~i---~~~Al~~ia 204 (504)
T PRK14963 134 NALLKTLEE---PPEHVIFILATTEPEKMPPTILSRT---QHFRFRRLTEEEIAGKLRRLLEAEGREA---EPEALQLVA 204 (504)
T ss_pred HHHHHHHHh---CCCCEEEEEEcCChhhCChHHhcce---EEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHH
Confidence 445555432 2345788888898999999999844 4799999999999999999988777654 455688899
Q ss_pred HHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 511 ELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 511 ~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
..+.| +.+++.+++..+.. . ...||.+++.+.+...
T Consensus 205 ~~s~G-dlR~aln~Lekl~~---~--~~~It~~~V~~~l~~~ 240 (504)
T PRK14963 205 RLADG-AMRDAESLLERLLA---L--GTPVTRKQVEEALGLP 240 (504)
T ss_pred HHcCC-CHHHHHHHHHHHHh---c--CCCCCHHHHHHHHCCC
Confidence 88877 56666666665532 1 2469999998887655
No 86
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.1e-15 Score=176.53 Aligned_cols=209 Identities=17% Similarity=0.190 Sum_probs=153.8
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCe----------
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPF---------- 367 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pf---------- 367 (845)
.++++.+|+||+|++.+++.|...+.. .+.+..+||+||||||||++|+++|+.+++..
T Consensus 8 ~k~rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C 76 (527)
T PRK14969 8 RKWRPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVC 76 (527)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 457889999999999999988776642 23467889999999999999999999986531
Q ss_pred --------------EEeechhHHHhhhhhhhhhHHHHHHHHHhc----CCcEEEEcccchhccCCCCCCCCCCchHHHHH
Q 043051 368 --------------FAANGTDFVEMFVGVAASRVKDLFASARSF----APSIIFIDEIDAIGSKRGGPDIGGGGAEREQG 429 (845)
Q Consensus 368 --------------i~vs~sdf~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~ 429 (845)
+.++++ ...+...+|.+.+.+... ...|++|||+|.+ +....+.
T Consensus 77 ~~C~~i~~~~~~d~~ei~~~------~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~l------------s~~a~na 138 (527)
T PRK14969 77 SACLEIDSGRFVDLIEVDAA------SNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHML------------SKSAFNA 138 (527)
T ss_pred HHHHHHhcCCCCceeEeecc------ccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccC------------CHHHHHH
Confidence 112111 012345678888776431 2359999999998 2334455
Q ss_pred HHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHH
Q 043051 430 LLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEI 509 (845)
Q Consensus 430 L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~L 509 (845)
|+..|++ .+..+++|.+|+.+..+.+.++++| .++.|..++.++..+.+...+...+... .+..+..+
T Consensus 139 LLK~LEe------pp~~~~fIL~t~d~~kil~tI~SRc---~~~~f~~l~~~~i~~~L~~il~~egi~~---~~~al~~l 206 (527)
T PRK14969 139 MLKTLEE------PPEHVKFILATTDPQKIPVTVLSRC---LQFNLKQMPPPLIVSHLQHILEQENIPF---DATALQLL 206 (527)
T ss_pred HHHHHhC------CCCCEEEEEEeCChhhCchhHHHHH---HHHhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHH
Confidence 5555554 3455888888888888888899854 5789999999999999988887665543 45567888
Q ss_pred HHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 510 AELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 510 A~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
++.+.| +.+++.+++..+... +...|+.+++.+.+...
T Consensus 207 a~~s~G-slr~al~lldqai~~----~~~~I~~~~v~~~~~~~ 244 (527)
T PRK14969 207 ARAAAG-SMRDALSLLDQAIAY----GGGTVNESEVRAMLGAI 244 (527)
T ss_pred HHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHCCC
Confidence 888877 788888888877543 34679999998876544
No 87
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.65 E-value=8.7e-15 Score=152.37 Aligned_cols=208 Identities=16% Similarity=0.221 Sum_probs=142.1
Q ss_pred CCCCcccccc--cHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhH
Q 043051 301 TGVTFDDFAG--QEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDF 375 (845)
Q Consensus 301 ~~~tF~dVvG--~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf 375 (845)
.+.+|+++++ ...+.+.+++++. ...+.+++|+||||||||++|+++++++ +.++++++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 4577888873 4445555554432 1235789999999999999999998876 578999999887
Q ss_pred HHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCC
Q 043051 376 VEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNR 455 (845)
Q Consensus 376 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~ 455 (845)
.... .+++.... .+.+|+|||+|.+.. .......|..++..+.. .+..+|++++..
T Consensus 78 ~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~----------~~~~~~~L~~~l~~~~~----~~~~iIits~~~ 133 (226)
T TIGR03420 78 AQAD--------PEVLEGLE--QADLVCLDDVEAIAG----------QPEWQEALFHLYNRVRE----AGGRLLIAGRAA 133 (226)
T ss_pred HHhH--------HHHHhhcc--cCCEEEEeChhhhcC----------ChHHHHHHHHHHHHHHH----cCCeEEEECCCC
Confidence 5432 23333332 246999999999832 11234566666665422 122444444444
Q ss_pred CCCC---ChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 043051 456 LDIL---DPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILT 532 (845)
Q Consensus 456 pd~L---DpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A 532 (845)
+..+ ++.|.++..+..++.++.|+.+++..+++.++...+... ++..++.|+...+| +.+++.++++++...+
T Consensus 134 ~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~---~~~~l~~L~~~~~g-n~r~L~~~l~~~~~~~ 209 (226)
T TIGR03420 134 PAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQL---PDEVADYLLRHGSR-DMGSLMALLDALDRAS 209 (226)
T ss_pred hHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 4433 277887333357899999999999999998776555443 45667888887666 8999999999987666
Q ss_pred HHcCCCccCHHHHHHHH
Q 043051 533 ARKDLDYIGQEELLEAL 549 (845)
Q Consensus 533 ~r~~~~~It~edl~~Al 549 (845)
...+ ..|+.+.+.+.+
T Consensus 210 ~~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 210 LAAK-RKITIPFVKEVL 225 (226)
T ss_pred HHhC-CCCCHHHHHHHh
Confidence 5554 569998888765
No 88
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.65 E-value=1.4e-14 Score=169.68 Aligned_cols=224 Identities=19% Similarity=0.246 Sum_probs=157.0
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeEEeechh
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA-----GVPFFAANGTD 374 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el-----g~pfi~vs~sd 374 (845)
....+|++++..+.-......+.....++. .....++|||++|||||+|++|+++++ +..++++++.+
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae~~~-------~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaee 354 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAEAPA-------KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEE 354 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHhCcc-------ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 467899999854443322222222222221 112459999999999999999999976 57889999999
Q ss_pred HHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcC
Q 043051 375 FVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATN 454 (845)
Q Consensus 375 f~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN 454 (845)
|.+.+...........|..... .+.+|+||||+.+..+ ...+..|+.+++.+- ..++-+||++..
T Consensus 355 f~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gk----------e~tqeeLF~l~N~l~----e~gk~IIITSd~ 419 (617)
T PRK14086 355 FTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDK----------ESTQEEFFHTFNTLH----NANKQIVLSSDR 419 (617)
T ss_pred HHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCC----------HHHHHHHHHHHHHHH----hcCCCEEEecCC
Confidence 9887765433333333443322 4689999999998432 233455666666642 123345554443
Q ss_pred CCC---CCChhhhccCcc--cEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHH
Q 043051 455 RLD---ILDPALLRKGRF--DKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAG 529 (845)
Q Consensus 455 ~pd---~LDpALlRpgRF--dr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAa 529 (845)
.|. .+++.|.+ || ..++.+..||.+.|.+||+.++...++.. ++..++.|+....+ +.++|..+++...
T Consensus 420 ~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l---~~eVi~yLa~r~~r-nvR~LegaL~rL~ 493 (617)
T PRK14086 420 PPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNA---PPEVLEFIASRISR-NIRELEGALIRVT 493 (617)
T ss_pred ChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 343 46899999 66 56889999999999999999998877765 56678899998876 7889999999887
Q ss_pred HHHHHcCCCccCHHHHHHHHHhc
Q 043051 530 ILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 530 l~A~r~~~~~It~edl~~Al~r~ 552 (845)
..+...+ ..||.+.++++++..
T Consensus 494 a~a~~~~-~~itl~la~~vL~~~ 515 (617)
T PRK14086 494 AFASLNR-QPVDLGLTEIVLRDL 515 (617)
T ss_pred HHHHhhC-CCCCHHHHHHHHHHh
Confidence 6666555 569999999988765
No 89
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.65 E-value=1.7e-14 Score=165.64 Aligned_cols=228 Identities=18% Similarity=0.233 Sum_probs=150.4
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHH
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFV 376 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~ 376 (845)
.+..||++++-.+.-......+....+.+. ..+.....+++||||||+|||+|++++++++ +..++++++.+|.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~---~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~ 181 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSE---QGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFT 181 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhccc---cccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHH
Confidence 567899998833333322222222222211 0111223679999999999999999999876 7899999998887
Q ss_pred HhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCC
Q 043051 377 EMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRL 456 (845)
Q Consensus 377 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~p 456 (845)
..+...-...-...|..... .+.+|+||||+.+.++ ...+..+..++..+- ..++.+|+++++.|
T Consensus 182 ~~~~~~l~~~~~~~f~~~~~-~~dvLiIDDiq~l~~k----------~~~qeelf~l~N~l~----~~~k~IIlts~~~p 246 (445)
T PRK12422 182 EHLVSAIRSGEMQRFRQFYR-NVDALFIEDIEVFSGK----------GATQEEFFHTFNSLH----TEGKLIVISSTCAP 246 (445)
T ss_pred HHHHHHHhcchHHHHHHHcc-cCCEEEEcchhhhcCC----------hhhHHHHHHHHHHHH----HCCCcEEEecCCCH
Confidence 65543322111123443332 4679999999998432 223444555554431 12335666665555
Q ss_pred C---CCChhhhccCccc--EEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHH-
Q 043051 457 D---ILDPALLRKGRFD--KIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGI- 530 (845)
Q Consensus 457 d---~LDpALlRpgRFd--r~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal- 530 (845)
. .++++|.+ ||. ..+.+..|+.++|.+||+..+...++.. ++..++.||....+ +.++|.+.++..++
T Consensus 247 ~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l---~~evl~~la~~~~~-dir~L~g~l~~l~~~ 320 (445)
T PRK12422 247 QDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRI---EETALDFLIEALSS-NVKSLLHALTLLAKR 320 (445)
T ss_pred HHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 4 46799999 774 7899999999999999999998776554 56668888888776 77888888887752
Q ss_pred --HHHHcCCCccCHHHHHHHHHhc
Q 043051 531 --LTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 531 --~A~r~~~~~It~edl~~Al~r~ 552 (845)
.+...+ ..||.+.+++++...
T Consensus 321 ~a~~~~~~-~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 321 VAYKKLSH-QLLYVDDIKALLHDV 343 (445)
T ss_pred HHHHHhhC-CCCCHHHHHHHHHHh
Confidence 222223 569999999999865
No 90
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=4.4e-15 Score=173.29 Aligned_cols=209 Identities=18% Similarity=0.204 Sum_probs=152.9
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-----------
Q 043051 297 AEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGV----------- 365 (845)
Q Consensus 297 ~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~----------- 365 (845)
.+++++.+|+||+|++.+++.|...+.. .+.+..+||+||||||||++|+++|+.+.+
T Consensus 7 a~KyRP~~f~diiGq~~~v~~L~~~i~~-----------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~ 75 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNSLVHALET-----------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNK 75 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence 3458899999999999999887766642 134667999999999999999999998764
Q ss_pred -------------CeEEeechhHHHhhhhhhhhhHHHHHHHHHh----cCCcEEEEcccchhccCCCCCCCCCCchHHHH
Q 043051 366 -------------PFFAANGTDFVEMFVGVAASRVKDLFASARS----FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQ 428 (845)
Q Consensus 366 -------------pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~ 428 (845)
.++.++++. ..+...++.+++.+.. ....|++|||+|.+ +....+
T Consensus 76 C~sC~~i~~~~~~dlieidaas------~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~l------------s~~a~n 137 (546)
T PRK14957 76 CENCVAINNNSFIDLIEIDAAS------RTGVEETKEILDNIQYMPSQGRYKVYLIDEVHML------------SKQSFN 137 (546)
T ss_pred cHHHHHHhcCCCCceEEeeccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhc------------cHHHHH
Confidence 222222211 1223456666666542 12459999999998 344566
Q ss_pred HHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHH
Q 043051 429 GLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQE 508 (845)
Q Consensus 429 ~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~ 508 (845)
.|+..|++ .++.+++|.+|+.+..+.+.++++| ..+.|..++.++..+.++..+...+... .+..+..
T Consensus 138 aLLK~LEe------pp~~v~fIL~Ttd~~kil~tI~SRc---~~~~f~~Ls~~eI~~~L~~il~~egi~~---e~~Al~~ 205 (546)
T PRK14957 138 ALLKTLEE------PPEYVKFILATTDYHKIPVTILSRC---IQLHLKHISQADIKDQLKIILAKENINS---DEQSLEY 205 (546)
T ss_pred HHHHHHhc------CCCCceEEEEECChhhhhhhHHHhe---eeEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHH
Confidence 77777766 2345777777777888888899855 6899999999999999998887766543 4566888
Q ss_pred HHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Q 043051 509 IAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKR 551 (845)
Q Consensus 509 LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r 551 (845)
++..+.| +.+++.+++..+..+. + ..|+.+++++++..
T Consensus 206 Ia~~s~G-dlR~alnlLek~i~~~---~-~~It~~~V~~~l~~ 243 (546)
T PRK14957 206 IAYHAKG-SLRDALSLLDQAISFC---G-GELKQAQIKQMLGI 243 (546)
T ss_pred HHHHcCC-CHHHHHHHHHHHHHhc---c-CCCCHHHHHHHHcc
Confidence 8988876 7778888887765442 2 56999999987754
No 91
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.65 E-value=6.2e-15 Score=163.83 Aligned_cols=211 Identities=19% Similarity=0.250 Sum_probs=151.6
Q ss_pred ccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---------
Q 043051 296 SAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVP--------- 366 (845)
Q Consensus 296 ~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~p--------- 366 (845)
+.++.++.+|++++|++.+++.|.+.+.. .+.|..+|||||||+|||++|+++|+.+.++
T Consensus 4 ~~~~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~ 72 (355)
T TIGR02397 4 LARKYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCN 72 (355)
T ss_pred HHHHhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 34567899999999999999988876632 2346789999999999999999999987532
Q ss_pred ---------------eEEeechhHHHhhhhhhhhhHHHHHHHHHhc----CCcEEEEcccchhccCCCCCCCCCCchHHH
Q 043051 367 ---------------FFAANGTDFVEMFVGVAASRVKDLFASARSF----APSIIFIDEIDAIGSKRGGPDIGGGGAERE 427 (845)
Q Consensus 367 ---------------fi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~ 427 (845)
++.+++.+ ..+...++.+++.+... ...||+|||+|.+. ...
T Consensus 73 ~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~------------~~~- 133 (355)
T TIGR02397 73 ECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS------------KSA- 133 (355)
T ss_pred CCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC------------HHH-
Confidence 22222221 12344577788776542 23599999999982 222
Q ss_pred HHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHH
Q 043051 428 QGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQ 507 (845)
Q Consensus 428 ~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~ 507 (845)
.+.++..++. .+..+++|.+||.++.+.+++.+ |+ ..+.+++|+.++..+++...++..+... ++..+.
T Consensus 134 --~~~Ll~~le~---~~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i---~~~a~~ 202 (355)
T TIGR02397 134 --FNALLKTLEE---PPEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKI---EDEALE 202 (355)
T ss_pred --HHHHHHHHhC---CccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHH
Confidence 3344444432 33457788888888888899998 55 4789999999999999999988776553 346678
Q ss_pred HHHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 508 EIAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 508 ~LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
.++..+.| +.+.+.+.+..+..++ + ..||.+++.+++...
T Consensus 203 ~l~~~~~g-~~~~a~~~lekl~~~~---~-~~it~~~v~~~~~~~ 242 (355)
T TIGR02397 203 LIARAADG-SLRDALSLLDQLISFG---N-GNITYEDVNELLGLV 242 (355)
T ss_pred HHHHHcCC-ChHHHHHHHHHHHhhc---C-CCCCHHHHHHHhCCC
Confidence 88888776 6777777776665543 2 459999998877554
No 92
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.64 E-value=2.4e-14 Score=149.98 Aligned_cols=204 Identities=16% Similarity=0.217 Sum_probs=142.4
Q ss_pred CCCCCcccccc--cHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechh
Q 043051 300 TTGVTFDDFAG--QEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTD 374 (845)
Q Consensus 300 ~~~~tF~dVvG--~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sd 374 (845)
..+.+|+++++ ...+...+.++.. +...+.+++|+||||||||+||+++++++ +.+++++++.+
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 45788999883 3444444444332 22335689999999999999999999875 77899999887
Q ss_pred HHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcC
Q 043051 375 FVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATN 454 (845)
Q Consensus 375 f~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN 454 (845)
+.+.. .. ...+.+|+|||+|.+. ...+..|..++..+.. ....+++++++.
T Consensus 81 ~~~~~------------~~--~~~~~~liiDdi~~l~------------~~~~~~L~~~~~~~~~---~~~~~vl~~~~~ 131 (227)
T PRK08903 81 PLLAF------------DF--DPEAELYAVDDVERLD------------DAQQIALFNLFNRVRA---HGQGALLVAGPA 131 (227)
T ss_pred hHHHH------------hh--cccCCEEEEeChhhcC------------chHHHHHHHHHHHHHH---cCCcEEEEeCCC
Confidence 64321 11 1245799999999882 2345567777765432 122234444443
Q ss_pred CCC--CCChhhhccCcc--cEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHH
Q 043051 455 RLD--ILDPALLRKGRF--DKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGI 530 (845)
Q Consensus 455 ~pd--~LDpALlRpgRF--dr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal 530 (845)
.|. .+.+.|.+ || ...+.+++|+.+++..++..++...++.. ++..++.|++..+| +.+++.++++....
T Consensus 132 ~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l---~~~al~~L~~~~~g-n~~~l~~~l~~l~~ 205 (227)
T PRK08903 132 APLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQL---ADEVPDYLLTHFRR-DMPSLMALLDALDR 205 (227)
T ss_pred CHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhccC-CHHHHHHHHHHHHH
Confidence 332 35678887 55 57899999999999999988777666554 45678888987777 89999999998765
Q ss_pred HHHHcCCCccCHHHHHHHHH
Q 043051 531 LTARKDLDYIGQEELLEALK 550 (845)
Q Consensus 531 ~A~r~~~~~It~edl~~Al~ 550 (845)
.|...+ ..||...+++++.
T Consensus 206 ~~~~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 206 YSLEQK-RPVTLPLLREMLA 224 (227)
T ss_pred HHHHhC-CCCCHHHHHHHHh
Confidence 555544 6899999999875
No 93
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.64 E-value=2.3e-14 Score=161.74 Aligned_cols=226 Identities=24% Similarity=0.306 Sum_probs=152.0
Q ss_pred CCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeEEeechhHH-
Q 043051 303 VTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA-----GVPFFAANGTDFV- 376 (845)
Q Consensus 303 ~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el-----g~pfi~vs~sdf~- 376 (845)
...+.++|.++..++|...+..... + ..|.+++|+||||||||++++.+++++ ++++++++|....
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~-------~-~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALR-------G-SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhC-------C-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 3557899999877777666643211 1 235679999999999999999999876 5789999986432
Q ss_pred ---------Hhhhhh-------hhh-hHHHHHHHHHh-cCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc
Q 043051 377 ---------EMFVGV-------AAS-RVKDLFASARS-FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD 438 (845)
Q Consensus 377 ---------~~~vG~-------~~~-~vr~lF~~A~~-~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd 438 (845)
....+. ... .+..+.+.... ..+.||+|||+|.+....+ ...+..++..++
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~-----------~~~l~~l~~~~~ 167 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG-----------NDVLYSLLRAHE 167 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC-----------chHHHHHHHhhh
Confidence 111110 111 12222232222 3467999999999962111 134555554443
Q ss_pred CCcccCCcEEEEEEcCCCC---CCChhhhccCccc-EEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHcc
Q 043051 439 GFKVSTSQVLVIGATNRLD---ILDPALLRKGRFD-KIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTE 514 (845)
Q Consensus 439 g~~~~~~~ViVIaaTN~pd---~LDpALlRpgRFd-r~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~ 514 (845)
... ..++.+|+++|..+ .+++.+.+ ||. ..|.|++++.++..+|++.++... +......+..++.+++.+.
T Consensus 168 ~~~--~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~-~~~~~~~~~~l~~i~~~~~ 242 (394)
T PRK00411 168 EYP--GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEG-FYPGVVDDEVLDLIADLTA 242 (394)
T ss_pred ccC--CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhh-cccCCCCHhHHHHHHHHHH
Confidence 322 22588889888764 46788877 553 578999999999999999888542 2111224556777887774
Q ss_pred CC--cHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 515 DF--TGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 515 Gf--SgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
+. ..+.+.++|..|+..|..++...|+.+|+..|+++.
T Consensus 243 ~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 243 REHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 42 345666888999889988888899999999999877
No 94
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=1.1e-14 Score=171.48 Aligned_cols=210 Identities=16% Similarity=0.163 Sum_probs=153.2
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVP----------- 366 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~p----------- 366 (845)
+++++.+|+||+|++.+++.|...+.. .+.|..+||+||+|||||++|+++|+.+++.
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 458899999999999999988777642 2356778999999999999999999988642
Q ss_pred ---------------eEEeechhHHHhhhhhhhhhHHHHHHHHHh----cCCcEEEEcccchhccCCCCCCCCCCchHHH
Q 043051 367 ---------------FFAANGTDFVEMFVGVAASRVKDLFASARS----FAPSIIFIDEIDAIGSKRGGPDIGGGGAERE 427 (845)
Q Consensus 367 ---------------fi~vs~sdf~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~ 427 (845)
++.++++. ..+...+|++.+.+.. ....|++|||+|.+ +....
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas------~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~L------------t~~A~ 135 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAAS------HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMV------------TTAGF 135 (584)
T ss_pred HHHHHhhcccCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcC------------CHHHH
Confidence 22222211 1134556666555532 12359999999999 23455
Q ss_pred HHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHH
Q 043051 428 QGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQ 507 (845)
Q Consensus 428 ~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~ 507 (845)
+.|+..|++ .+.++++|.+|+.+..|.++|+++| .++.|..++.++..+.|...+...+... ++..+.
T Consensus 136 NALLK~LEE------pp~~~~fIL~tte~~kll~TI~SRc---~~~~F~~l~~~~i~~~L~~i~~~egi~i---~~~al~ 203 (584)
T PRK14952 136 NALLKIVEE------PPEHLIFIFATTEPEKVLPTIRSRT---HHYPFRLLPPRTMRALIARICEQEGVVV---DDAVYP 203 (584)
T ss_pred HHHHHHHhc------CCCCeEEEEEeCChHhhHHHHHHhc---eEEEeeCCCHHHHHHHHHHHHHHcCCCC---CHHHHH
Confidence 666666655 3455888888888899999999954 6899999999999999998888766543 345677
Q ss_pred HHHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 508 EIAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 508 ~LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
.++..+.| +.+++.++++.++..+ +...||.+++...+...
T Consensus 204 ~Ia~~s~G-dlR~aln~Ldql~~~~---~~~~It~~~v~~llg~~ 244 (584)
T PRK14952 204 LVIRAGGG-SPRDTLSVLDQLLAGA---ADTHVTYQRALGLLGAT 244 (584)
T ss_pred HHHHHcCC-CHHHHHHHHHHHHhcc---CCCCcCHHHHHHHHCCC
Confidence 78887776 7888888888765432 24568888888776543
No 95
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=5.4e-15 Score=172.93 Aligned_cols=209 Identities=18% Similarity=0.264 Sum_probs=152.2
Q ss_pred ccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC----------
Q 043051 296 SAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGV---------- 365 (845)
Q Consensus 296 ~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~---------- 365 (845)
+.++++|.+|++++|++.+++.|...+.. .+.|.++||+||||||||++|+++|+.+.+
T Consensus 6 ~~~KyRP~~F~dIIGQe~iv~~L~~aI~~-----------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg 74 (605)
T PRK05896 6 FYRKYRPHNFKQIIGQELIKKILVNAILN-----------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCN 74 (605)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 44568999999999999999888776532 234678999999999999999999998753
Q ss_pred --------------CeEEeechhHHHhhhhhhhhhHHHHHHHHHhc----CCcEEEEcccchhccCCCCCCCCCCchHHH
Q 043051 366 --------------PFFAANGTDFVEMFVGVAASRVKDLFASARSF----APSIIFIDEIDAIGSKRGGPDIGGGGAERE 427 (845)
Q Consensus 366 --------------pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~ 427 (845)
.++.++++. ..+...+|.+.+.+... ...|++|||+|.+ +....
T Consensus 75 ~C~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~L------------t~~A~ 136 (605)
T PRK05896 75 SCSVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHML------------STSAW 136 (605)
T ss_pred ccHHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhC------------CHHHH
Confidence 122222211 12345677777766442 2359999999998 23345
Q ss_pred HHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHH
Q 043051 428 QGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQ 507 (845)
Q Consensus 428 ~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~ 507 (845)
+.|+..|++ ++..+++|.+|+.+..|.++++++| .++.|..|+..+....|+..+...+... ++..+.
T Consensus 137 NaLLKtLEE------Pp~~tvfIL~Tt~~~KLl~TI~SRc---q~ieF~~Ls~~eL~~~L~~il~kegi~I---s~eal~ 204 (605)
T PRK05896 137 NALLKTLEE------PPKHVVFIFATTEFQKIPLTIISRC---QRYNFKKLNNSELQELLKSIAKKEKIKI---EDNAID 204 (605)
T ss_pred HHHHHHHHh------CCCcEEEEEECCChHhhhHHHHhhh---hhcccCCCCHHHHHHHHHHHHHHcCCCC---CHHHHH
Confidence 666666665 3445888888888999999999944 4789999999999999998887766543 345678
Q ss_pred HHHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 043051 508 EIAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALK 550 (845)
Q Consensus 508 ~LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~ 550 (845)
.++..+.| +.+++.++++.++.+. + ..|+.+++.+.+.
T Consensus 205 ~La~lS~G-dlR~AlnlLekL~~y~---~-~~It~e~V~ellg 242 (605)
T PRK05896 205 KIADLADG-SLRDGLSILDQLSTFK---N-SEIDIEDINKTFG 242 (605)
T ss_pred HHHHHcCC-cHHHHHHHHHHHHhhc---C-CCCCHHHHHHHhc
Confidence 88888877 7777777777654432 3 2399998888654
No 96
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=5.8e-15 Score=174.62 Aligned_cols=208 Identities=21% Similarity=0.284 Sum_probs=155.3
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVP----------- 366 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~p----------- 366 (845)
+++++.+|+||+|++++++.|...+.. .+.|..+|||||+|||||++|+++|+.++++
T Consensus 8 ~k~RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 8 RKYRPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 457899999999999999988876642 2357789999999999999999999998643
Q ss_pred -------------eEEeechhHHHhhhhhhhhhHHHHHHHHHhcCC-----cEEEEcccchhccCCCCCCCCCCchHHHH
Q 043051 367 -------------FFAANGTDFVEMFVGVAASRVKDLFASARSFAP-----SIIFIDEIDAIGSKRGGPDIGGGGAEREQ 428 (845)
Q Consensus 367 -------------fi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~aP-----~ILfIDEIDaL~~~R~~~~~~~~~~e~~~ 428 (845)
++.+++.+ ..+...++++.+.+.. .| .|++|||+|.+ +....+
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~-~p~~~~~KVvIIdev~~L------------t~~a~n 137 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKY-LPSRSRYKIFIIDEVHML------------STNAFN 137 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHh-ccccCCceEEEEEChhhC------------CHHHHH
Confidence 22333221 1234567787777643 33 59999999998 334556
Q ss_pred HHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHH
Q 043051 429 GLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQE 508 (845)
Q Consensus 429 ~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~ 508 (845)
.|+..|++ .+.++++|.+|+.++.|.+.|+++| .++.|..++.++....+...++..++.. .+..+..
T Consensus 138 aLLk~LEe------pp~~~~fIl~t~~~~kl~~tI~SRc---~~~~f~~l~~~~i~~~L~~i~~~egi~i---~~~al~~ 205 (576)
T PRK14965 138 ALLKTLEE------PPPHVKFIFATTEPHKVPITILSRC---QRFDFRRIPLQKIVDRLRYIADQEGISI---SDAALAL 205 (576)
T ss_pred HHHHHHHc------CCCCeEEEEEeCChhhhhHHHHHhh---hhhhcCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHH
Confidence 66666665 3455888888899999999999954 4789999999999999988887776654 4566888
Q ss_pred HHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 509 IAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 509 LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
+++.+.| +-+++.+++..+..+. + ..|+.+++...+...
T Consensus 206 la~~a~G-~lr~al~~Ldqliay~---g-~~It~edV~~llG~~ 244 (576)
T PRK14965 206 VARKGDG-SMRDSLSTLDQVLAFC---G-DAVGDDDVAELLGVV 244 (576)
T ss_pred HHHHcCC-CHHHHHHHHHHHHHhc---c-CCCCHHHHHHHhCCC
Confidence 9998887 6777777777665443 2 359999998765443
No 97
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=8e-15 Score=174.51 Aligned_cols=216 Identities=21% Similarity=0.276 Sum_probs=155.1
Q ss_pred ccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEE---eec
Q 043051 296 SAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFA---ANG 372 (845)
Q Consensus 296 ~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~---vs~ 372 (845)
+..+++|.+|+||+|++.+++.|...+.. .+.+..+||+||+|||||++|+++|+.+.++-.. -.|
T Consensus 8 l~~KyRP~~f~dIiGQe~~v~~L~~aI~~-----------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC 76 (725)
T PRK07133 8 LYRKYRPKTFDDIVGQDHIVQTLKNIIKS-----------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPC 76 (725)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCch
Confidence 34568999999999999999988877642 1346789999999999999999999988653210 112
Q ss_pred hhHHH---h----h-----hhhhhhhHHHHHHHHHhc----CCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHh
Q 043051 373 TDFVE---M----F-----VGVAASRVKDLFASARSF----APSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTE 436 (845)
Q Consensus 373 sdf~~---~----~-----vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~e 436 (845)
..... . + ...+...+|.+.+.+... ...|++|||+|.+. ....+.|+..|++
T Consensus 77 ~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT------------~~A~NALLKtLEE 144 (725)
T PRK07133 77 QECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS------------KSAFNALLKTLEE 144 (725)
T ss_pred hHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC------------HHHHHHHHHHhhc
Confidence 11110 0 0 012345688888777542 23699999999982 2345555555555
Q ss_pred hcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCC
Q 043051 437 MDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDF 516 (845)
Q Consensus 437 mdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~Gf 516 (845)
++..+++|.+|+.++.|.+.++++| .++.|.+|+.++..+.|...+...++.. .+..+..+|..+.|
T Consensus 145 ------PP~~tifILaTte~~KLl~TI~SRc---q~ieF~~L~~eeI~~~L~~il~kegI~i---d~eAl~~LA~lS~G- 211 (725)
T PRK07133 145 ------PPKHVIFILATTEVHKIPLTILSRV---QRFNFRRISEDEIVSRLEFILEKENISY---EKNALKLIAKLSSG- 211 (725)
T ss_pred ------CCCceEEEEEcCChhhhhHHHHhhc---eeEEccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCC-
Confidence 3455888888889999999999944 4899999999999999998887766543 34557888988887
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Q 043051 517 TGAELQNILNEAGILTARKDLDYIGQEELLEALKR 551 (845)
Q Consensus 517 SgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r 551 (845)
+.+++.+++..++.+. ...|+.+++.+.+..
T Consensus 212 slR~AlslLekl~~y~----~~~It~e~V~ellg~ 242 (725)
T PRK07133 212 SLRDALSIAEQVSIFG----NNKITLKNVEELFGL 242 (725)
T ss_pred CHHHHHHHHHHHHHhc----cCCCCHHHHHHHHcC
Confidence 7778888877765442 234899888876654
No 98
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=8.8e-15 Score=171.91 Aligned_cols=210 Identities=19% Similarity=0.161 Sum_probs=149.8
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC----------
Q 043051 297 AEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVP---------- 366 (845)
Q Consensus 297 ~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~p---------- 366 (845)
.+++++.+|+||+|++.+++.|...+.. .+.+..+||+||||||||++|+++|+.+.+.
T Consensus 7 a~KyRP~sf~dIiGQe~v~~~L~~ai~~-----------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~ 75 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKAILSRAAQE-----------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNT 75 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcc
Confidence 3568899999999999999888877642 1235689999999999999999999998753
Q ss_pred --------------eEEeechhHHHhhhhhhhhhHHHHHHHHH----hcCCcEEEEcccchhccCCCCCCCCCCchHHHH
Q 043051 367 --------------FFAANGTDFVEMFVGVAASRVKDLFASAR----SFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQ 428 (845)
Q Consensus 367 --------------fi~vs~sdf~~~~vG~~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~ 428 (845)
++.++++. ..+...++.+.+.+. .....||||||+|.+ +....+
T Consensus 76 C~sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~L------------t~~a~n 137 (624)
T PRK14959 76 CEQCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHML------------TREAFN 137 (624)
T ss_pred cHHHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhC------------CHHHHH
Confidence 33333321 112234455443332 123469999999999 233455
Q ss_pred HHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHH
Q 043051 429 GLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQE 508 (845)
Q Consensus 429 ~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~ 508 (845)
.|+..|++ ....+++|.+||.+..+.+.|++ |+ .++.|..++.++..++|+..+...+... .+..+..
T Consensus 138 aLLk~LEE------P~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~i---d~eal~l 205 (624)
T PRK14959 138 ALLKTLEE------PPARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDY---DPAAVRL 205 (624)
T ss_pred HHHHHhhc------cCCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHH
Confidence 55555554 23458888889988889889998 44 4789999999999999998887766543 4566888
Q ss_pred HHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 509 IAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 509 LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
|++.+.| +.+++.+++..++ + .+.+.|+.+++..++...
T Consensus 206 IA~~s~G-dlR~Al~lLeqll--~--~g~~~It~d~V~~~lg~~ 244 (624)
T PRK14959 206 IARRAAG-SVRDSMSLLGQVL--A--LGESRLTIDGARGVLGLA 244 (624)
T ss_pred HHHHcCC-CHHHHHHHHHHHH--H--hcCCCcCHHHHHHHhCCC
Confidence 8888876 6666767766542 2 244579999999887543
No 99
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.63 E-value=1.2e-14 Score=178.54 Aligned_cols=202 Identities=25% Similarity=0.327 Sum_probs=147.2
Q ss_pred CCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeEEe
Q 043051 301 TGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA----------GVPFFAA 370 (845)
Q Consensus 301 ~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el----------g~pfi~v 370 (845)
..-.++.++|.++..+.+.+++. . +.+.+++|+||||||||++|+++|... +.+++.+
T Consensus 174 ~~~~~~~~igr~~ei~~~~~~L~---r---------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 174 IDGNLDPVIGREKEIERVIQILG---R---------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred HcCCCCCCCCcHHHHHHHHHHHc---c---------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 34568999999977776666542 2 124689999999999999999999976 4789999
Q ss_pred echhHH--HhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEE
Q 043051 371 NGTDFV--EMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVL 448 (845)
Q Consensus 371 s~sdf~--~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~Vi 448 (845)
+++.+. ..|.|..+.+++.+|+.++...++||||||||.|.+..+. .+.....+.|...| ..+.+.
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~----~g~~~~a~lLkp~l--------~rg~l~ 309 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAA----EGAIDAANILKPAL--------ARGELQ 309 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCC----CCcccHHHHhHHHH--------hCCCcE
Confidence 998877 4688889999999999998878899999999999765431 11222223333222 235699
Q ss_pred EEEEcCCCC-----CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhh----hcccchhhhhhHHHHHHHHccCCc--
Q 043051 449 VIGATNRLD-----ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARN----KYFRSEEEKDVLLQEIAELTEDFT-- 517 (845)
Q Consensus 449 VIaaTN~pd-----~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~----~~l~~~~~~d~dl~~LA~~t~GfS-- 517 (845)
+|++|+..+ ..|++|.+ ||. .|.++.|+.++...|++..... ..+. .++..+..++..+.+|.
T Consensus 310 ~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~---i~deal~~i~~ls~~yi~~ 383 (821)
T CHL00095 310 CIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLS---ISDKALEAAAKLSDQYIAD 383 (821)
T ss_pred EEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhhccCcc
Confidence 999999765 36899999 996 5899999999999998865432 1222 24556777777776654
Q ss_pred ---HHHHHHHHHHHHHHH
Q 043051 518 ---GAELQNILNEAGILT 532 (845)
Q Consensus 518 ---gaDL~~LvneAal~A 532 (845)
+.....++++|+...
T Consensus 384 r~lPdkaidlld~a~a~~ 401 (821)
T CHL00095 384 RFLPDKAIDLLDEAGSRV 401 (821)
T ss_pred ccCchHHHHHHHHHHHHH
Confidence 345566677665443
No 100
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.62 E-value=4.8e-15 Score=182.28 Aligned_cols=167 Identities=25% Similarity=0.363 Sum_probs=128.9
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeEE
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA----------GVPFFA 369 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el----------g~pfi~ 369 (845)
-.+-.+++|+|+++. ++.++..|.... ..+++|+||||||||++|+++|..+ +.+++.
T Consensus 172 ~r~~~l~~vigr~~e---i~~~i~iL~r~~---------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 172 AEQGKLDPVIGRDEE---IRRTIQVLQRRT---------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred HhcCCCCcCCCCHHH---HHHHHHHHhcCC---------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 456689999999975 445555443322 2478999999999999999999987 788999
Q ss_pred eechhHH--HhhhhhhhhhHHHHHHHHHh-cCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCc
Q 043051 370 ANGTDFV--EMFVGVAASRVKDLFASARS-FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQ 446 (845)
Q Consensus 370 vs~sdf~--~~~vG~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ 446 (845)
++.+.++ .++.|..+.+++.+|+.+.. ..|+||||||||.|.+.++. .+.....+.|...| ..+.
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~----~~~~d~~~~lkp~l--------~~g~ 307 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA----DGAMDAGNMLKPAL--------ARGE 307 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCC----ccchhHHHHhcchh--------hcCC
Confidence 9888876 45888899999999998644 46889999999999765431 12223344444433 2456
Q ss_pred EEEEEEcCCCCC-----CChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhh
Q 043051 447 VLVIGATNRLDI-----LDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARN 493 (845)
Q Consensus 447 ViVIaaTN~pd~-----LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~ 493 (845)
+.+|+||+..+. +|+++.| ||+ .|.++.|+.+++..||+.+...
T Consensus 308 l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~ 356 (857)
T PRK10865 308 LHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKER 356 (857)
T ss_pred CeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhh
Confidence 999999998874 7999999 998 5889999999999999876644
No 101
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.62 E-value=3.2e-14 Score=150.48 Aligned_cols=210 Identities=17% Similarity=0.196 Sum_probs=139.8
Q ss_pred CCCCCccccc-c-cHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechh
Q 043051 300 TTGVTFDDFA-G-QEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTD 374 (845)
Q Consensus 300 ~~~~tF~dVv-G-~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sd 374 (845)
.+..+|++++ | ...+...+..+. ..+. +.+++||||||||||+|++++++++ |..+.+++..+
T Consensus 16 ~~~~~fd~f~~~~n~~a~~~l~~~~---~~~~---------~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 16 PDDETFASFYPGDNDSLLAALQNAL---RQEH---------SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCcCCccccccCccHHHHHHHHHHH---hCCC---------CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 4567899988 4 333433333332 1211 3479999999999999999999876 44566666655
Q ss_pred HHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCc-EEEEEEc
Q 043051 375 FVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQ-VLVIGAT 453 (845)
Q Consensus 375 f~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~-ViVIaaT 453 (845)
+... ..++++.... ..+|+|||++.+.+ ....+..|..++..+- ..++ .++++++
T Consensus 84 ~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~----------~~~~~~~lf~l~n~~~----e~g~~~li~ts~ 139 (235)
T PRK08084 84 RAWF--------VPEVLEGMEQ--LSLVCIDNIECIAG----------DELWEMAIFDLYNRIL----ESGRTRLLITGD 139 (235)
T ss_pred Hhhh--------hHHHHHHhhh--CCEEEEeChhhhcC----------CHHHHHHHHHHHHHHH----HcCCCeEEEeCC
Confidence 3221 1122222222 25899999999842 2344556666666541 1232 3555566
Q ss_pred CCCCC---CChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHH
Q 043051 454 NRLDI---LDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGI 530 (845)
Q Consensus 454 N~pd~---LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal 530 (845)
+.|.. +.|.|+++..-..++.+..|+.+++.++++..+...++.. ++..++.|++...| +.+.+.++++....
T Consensus 140 ~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l---~~~v~~~L~~~~~~-d~r~l~~~l~~l~~ 215 (235)
T PRK08084 140 RPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFEL---PEDVGRFLLKRLDR-EMRTLFMTLDQLDR 215 (235)
T ss_pred CChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhhcC-CHHHHHHHHHHHHH
Confidence 66665 5799999332347899999999999999998777766654 56778999999988 88899999887643
Q ss_pred HHHHcCCCccCHHHHHHHHH
Q 043051 531 LTARKDLDYIGQEELLEALK 550 (845)
Q Consensus 531 ~A~r~~~~~It~edl~~Al~ 550 (845)
.+.. ....||.+.+++++.
T Consensus 216 ~~l~-~~~~it~~~~k~~l~ 234 (235)
T PRK08084 216 ASIT-AQRKLTIPFVKEILK 234 (235)
T ss_pred HHHh-cCCCCCHHHHHHHHc
Confidence 3333 345699999888763
No 102
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.1e-14 Score=163.50 Aligned_cols=218 Identities=22% Similarity=0.273 Sum_probs=148.3
Q ss_pred cccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechh
Q 043051 295 ISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTD 374 (845)
Q Consensus 295 ~~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sd 374 (845)
.+.++++|.+|+|++|++.+++.+...+.. .+.|.++|||||||+|||++|+++|+.+..+.....+.+
T Consensus 6 ~~~~k~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~ 74 (367)
T PRK14970 6 VSARKYRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNED 74 (367)
T ss_pred HHHHHHCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 345678999999999999998877766532 234678999999999999999999998765322111110
Q ss_pred H------HHhhhhhhhhhHHHHHHHHHhc----CCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccC
Q 043051 375 F------VEMFVGVAASRVKDLFASARSF----APSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVST 444 (845)
Q Consensus 375 f------~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~ 444 (845)
+ .+.....+...++.+++.+... .+.||+|||+|.+. ....+.++..+++ .+
T Consensus 75 ~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~------------~~~~~~ll~~le~------~~ 136 (367)
T PRK14970 75 FSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS------------SAAFNAFLKTLEE------PP 136 (367)
T ss_pred CCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC------------HHHHHHHHHHHhC------CC
Confidence 0 0000112235677777766431 24699999999882 2223344444433 23
Q ss_pred CcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHH
Q 043051 445 SQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNI 524 (845)
Q Consensus 445 ~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~L 524 (845)
...++|.+|+.+..+.+++.+++ ..+.++.|+.++...++...+...+... ++..++.++..+.| +.+.+.+.
T Consensus 137 ~~~~~Il~~~~~~kl~~~l~sr~---~~v~~~~~~~~~l~~~l~~~~~~~g~~i---~~~al~~l~~~~~g-dlr~~~~~ 209 (367)
T PRK14970 137 AHAIFILATTEKHKIIPTILSRC---QIFDFKRITIKDIKEHLAGIAVKEGIKF---EDDALHIIAQKADG-ALRDALSI 209 (367)
T ss_pred CceEEEEEeCCcccCCHHHHhcc---eeEecCCccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhCCC-CHHHHHHH
Confidence 33566667777888999999844 4789999999999999998888776643 45678888888765 56666666
Q ss_pred HHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 525 LNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 525 vneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
++....++ +.. ||.+++++.+...
T Consensus 210 lekl~~y~---~~~-it~~~v~~~~~~~ 233 (367)
T PRK14970 210 FDRVVTFC---GKN-ITRQAVTENLNIL 233 (367)
T ss_pred HHHHHHhc---CCC-CCHHHHHHHhCCC
Confidence 66555443 323 8998888777544
No 103
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=2.2e-14 Score=166.72 Aligned_cols=208 Identities=20% Similarity=0.202 Sum_probs=153.0
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC------------
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGV------------ 365 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~------------ 365 (845)
++++|.+|+||+|++.+++.|...+.. .+.|..+|||||||||||++|+++|+.+.+
T Consensus 6 ~KyRP~~fdeiiGqe~v~~~L~~~I~~-----------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C 74 (535)
T PRK08451 6 LKYRPKHFDELIGQESVSKTLSLALDN-----------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC 74 (535)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 468899999999999999988877642 235778899999999999999999998742
Q ss_pred ------------CeEEeechhHHHhhhhhhhhhHHHHHHHHHhc----CCcEEEEcccchhccCCCCCCCCCCchHHHHH
Q 043051 366 ------------PFFAANGTDFVEMFVGVAASRVKDLFASARSF----APSIIFIDEIDAIGSKRGGPDIGGGGAEREQG 429 (845)
Q Consensus 366 ------------pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~ 429 (845)
.++.+++++ ..+...+|++.+.+... ...|++|||+|.+ +.+..+.
T Consensus 75 ~~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~L------------t~~A~NA 136 (535)
T PRK08451 75 IQCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHML------------TKEAFNA 136 (535)
T ss_pred HHHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccC------------CHHHHHH
Confidence 122232221 01245677777654321 1259999999998 3455666
Q ss_pred HHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHH
Q 043051 430 LLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEI 509 (845)
Q Consensus 430 L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~L 509 (845)
|+..|++. +..+.+|.+|+.+..|.++++++| .+++|.+++.++..+.++..+...+... .+..+..+
T Consensus 137 LLK~LEEp------p~~t~FIL~ttd~~kL~~tI~SRc---~~~~F~~Ls~~ei~~~L~~Il~~EGi~i---~~~Al~~I 204 (535)
T PRK08451 137 LLKTLEEP------PSYVKFILATTDPLKLPATILSRT---QHFRFKQIPQNSIISHLKTILEKEGVSY---EPEALEIL 204 (535)
T ss_pred HHHHHhhc------CCceEEEEEECChhhCchHHHhhc---eeEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHH
Confidence 76666662 344777777788899999999944 6899999999999999998888766553 45678889
Q ss_pred HHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Q 043051 510 AELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKR 551 (845)
Q Consensus 510 A~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r 551 (845)
+..+.| +.+++.+++..|..++ ...||.+++.+.+..
T Consensus 205 a~~s~G-dlR~alnlLdqai~~~----~~~It~~~V~~~lg~ 241 (535)
T PRK08451 205 ARSGNG-SLRDTLTLLDQAIIYC----KNAITESKVADMLGL 241 (535)
T ss_pred HHHcCC-cHHHHHHHHHHHHHhc----CCCCCHHHHHHHhCC
Confidence 998877 7888888887776554 246888888776543
No 104
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=1.2e-14 Score=176.84 Aligned_cols=210 Identities=17% Similarity=0.122 Sum_probs=153.3
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVP----------- 366 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~p----------- 366 (845)
.++++.+|+||+|++.+++.|...+.. .+++..+||+||+|||||++|+.||+.+.+.
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 468999999999999999988777642 2346679999999999999999999998652
Q ss_pred ---------------eEEeechhHHHhhhhhhhhhHHHHHHHHHh----cCCcEEEEcccchhccCCCCCCCCCCchHHH
Q 043051 367 ---------------FFAANGTDFVEMFVGVAASRVKDLFASARS----FAPSIIFIDEIDAIGSKRGGPDIGGGGAERE 427 (845)
Q Consensus 367 ---------------fi~vs~sdf~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~ 427 (845)
|+.+++.+ ..+...+|++.+.+.. ....|+||||+|.| +....
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas------~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l------------t~~a~ 137 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAAS------HGGVDDARELRERAFFAPAESRYKIFIIDEAHMV------------TPQGF 137 (824)
T ss_pred HHHHHHHcCCCCCCcEEEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEechhhc------------CHHHH
Confidence 12222211 0123456665544422 23469999999999 34566
Q ss_pred HHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHH
Q 043051 428 QGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQ 507 (845)
Q Consensus 428 ~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~ 507 (845)
+.|+.+|++. ...+++|++|+.++.|.+.|+++| .++.|..++.++..++|+..++..++.. .+..+.
T Consensus 138 NaLLK~LEEp------P~~~~fIl~tt~~~kLl~TIrSRc---~~v~F~~l~~~~l~~~L~~il~~EGv~i---d~eal~ 205 (824)
T PRK07764 138 NALLKIVEEP------PEHLKFIFATTEPDKVIGTIRSRT---HHYPFRLVPPEVMRGYLERICAQEGVPV---EPGVLP 205 (824)
T ss_pred HHHHHHHhCC------CCCeEEEEEeCChhhhhHHHHhhe---eEEEeeCCCHHHHHHHHHHHHHHcCCCC---CHHHHH
Confidence 7777777763 345888888888898999999955 6899999999999999999887776653 345577
Q ss_pred HHHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 508 EIAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 508 ~LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
.|++.+.| +.+++.++++..... .+...||.+++...+...
T Consensus 206 lLa~~sgG-dlR~Al~eLEKLia~---~~~~~IT~e~V~allg~~ 246 (824)
T PRK07764 206 LVIRAGGG-SVRDSLSVLDQLLAG---AGPEGVTYERAVALLGVT 246 (824)
T ss_pred HHHHHcCC-CHHHHHHHHHHHHhh---cCCCCCCHHHHHHHhcCC
Confidence 88888776 777777777765432 234569999888766443
No 105
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.62 E-value=7.8e-15 Score=156.37 Aligned_cols=195 Identities=24% Similarity=0.286 Sum_probs=139.5
Q ss_pred cccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC------CeE
Q 043051 295 ISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGV------PFF 368 (845)
Q Consensus 295 ~~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~------pfi 368 (845)
.+.+++++.+|+|++|++.+.+.|...+.. +. -..+|||||||||||..|+++|+++.. .+.
T Consensus 25 swteKYrPkt~de~~gQe~vV~~L~~a~~~-~~-----------lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl 92 (346)
T KOG0989|consen 25 SWTEKYRPKTFDELAGQEHVVQVLKNALLR-RI-----------LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVL 92 (346)
T ss_pred chHHHhCCCcHHhhcchHHHHHHHHHHHhh-cC-----------CceEEeeCCCCCcHhHHHHHHHHHhcCccccccchh
Confidence 356789999999999999999999887754 22 236899999999999999999999865 234
Q ss_pred EeechhHHHhhhhhhhhhHHHHHHHHHh---------cCC-cEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc
Q 043051 369 AANGTDFVEMFVGVAASRVKDLFASARS---------FAP-SIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD 438 (845)
Q Consensus 369 ~vs~sdf~~~~vG~~~~~vr~lF~~A~~---------~aP-~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd 438 (845)
..+.|+....-++ ...+.. |..... ..| .|++|||.|.+ ..+.+.+|...++.
T Consensus 93 ~lnaSderGisvv--r~Kik~-fakl~~~~~~~~~~~~~~fKiiIlDEcdsm------------tsdaq~aLrr~mE~-- 155 (346)
T KOG0989|consen 93 ELNASDERGISVV--REKIKN-FAKLTVLLKRSDGYPCPPFKIIILDECDSM------------TSDAQAALRRTMED-- 155 (346)
T ss_pred hhcccccccccch--hhhhcC-HHHHhhccccccCCCCCcceEEEEechhhh------------hHHHHHHHHHHHhc--
Confidence 4566655433221 122221 222211 112 59999999999 34566666666544
Q ss_pred CCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcH
Q 043051 439 GFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTG 518 (845)
Q Consensus 439 g~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSg 518 (845)
+ +..+++|..||..+.|...+.+++ ..+.|+....+.....|+..+...++.. ++..++.|+..+.| +=
T Consensus 156 -~---s~~trFiLIcnylsrii~pi~SRC---~KfrFk~L~d~~iv~rL~~Ia~~E~v~~---d~~al~~I~~~S~G-dL 224 (346)
T KOG0989|consen 156 -F---SRTTRFILICNYLSRIIRPLVSRC---QKFRFKKLKDEDIVDRLEKIASKEGVDI---DDDALKLIAKISDG-DL 224 (346)
T ss_pred -c---ccceEEEEEcCChhhCChHHHhhH---HHhcCCCcchHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCC-cH
Confidence 2 345889999999999999999954 4678888888888899999988888775 56678899998777 44
Q ss_pred HHHHHHHHHHH
Q 043051 519 AELQNILNEAG 529 (845)
Q Consensus 519 aDL~~LvneAa 529 (845)
++....+..++
T Consensus 225 R~Ait~Lqsls 235 (346)
T KOG0989|consen 225 RRAITTLQSLS 235 (346)
T ss_pred HHHHHHHHHhh
Confidence 44444444444
No 106
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.62 E-value=1e-14 Score=164.80 Aligned_cols=189 Identities=19% Similarity=0.269 Sum_probs=128.8
Q ss_pred CcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEE-eec----------
Q 043051 304 TFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFA-ANG---------- 372 (845)
Q Consensus 304 tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~-vs~---------- 372 (845)
.|++|+|++.+++.|+..+..-+. .+...+.+.|.++||+||||+|||++|+++|+.+.+.--. ..|
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~--~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA--DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc--cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 599999999999999998875332 2334566678999999999999999999999987543100 000
Q ss_pred ----hhH--HHh-hhhhhhhhHHHHHHHHHhc----CCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCc
Q 043051 373 ----TDF--VEM-FVGVAASRVKDLFASARSF----APSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFK 441 (845)
Q Consensus 373 ----sdf--~~~-~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~ 441 (845)
.++ +.. -...+...+|++++.+... ...|+||||+|.+ +....+.|+..|++
T Consensus 81 ~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m------------~~~aanaLLk~LEe----- 143 (394)
T PRK07940 81 AGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRL------------TERAANALLKAVEE----- 143 (394)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhc------------CHHHHHHHHHHhhc-----
Confidence 011 000 0112345688888887542 2359999999999 33455666666655
Q ss_pred ccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHH
Q 043051 442 VSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAEL 521 (845)
Q Consensus 442 ~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL 521 (845)
.+.++++|.+|+.++.|.|+++|++ ..+.|++|+.++..+.|.... +. .......++..+.|..+..+
T Consensus 144 -p~~~~~fIL~a~~~~~llpTIrSRc---~~i~f~~~~~~~i~~~L~~~~---~~-----~~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 144 -PPPRTVWLLCAPSPEDVLPTIRSRC---RHVALRTPSVEAVAEVLVRRD---GV-----DPETARRAARASQGHIGRAR 211 (394)
T ss_pred -CCCCCeEEEEECChHHChHHHHhhC---eEEECCCCCHHHHHHHHHHhc---CC-----CHHHHHHHHHHcCCCHHHHH
Confidence 2233555555555899999999954 589999999999887776321 22 23456778888888766554
Q ss_pred HH
Q 043051 522 QN 523 (845)
Q Consensus 522 ~~ 523 (845)
.-
T Consensus 212 ~l 213 (394)
T PRK07940 212 RL 213 (394)
T ss_pred HH
Confidence 43
No 107
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=1.9e-14 Score=166.86 Aligned_cols=217 Identities=20% Similarity=0.243 Sum_probs=150.9
Q ss_pred ccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-------eE
Q 043051 296 SAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVP-------FF 368 (845)
Q Consensus 296 ~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~p-------fi 368 (845)
+..+++|.+|+|++|++.+.+.|...+.. .+.+..+|||||||||||++|+.+|..+++. .-
T Consensus 6 ~~~kyRP~~f~diiGq~~i~~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~ 74 (486)
T PRK14953 6 FARKYRPKFFKEVIGQEIVVRILKNAVKL-----------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCG 74 (486)
T ss_pred HHHhhCCCcHHHccChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCC
Confidence 34568899999999999999888776632 1245678999999999999999999987641 11
Q ss_pred E-eechhHHH-----hh-----hhhhhhhHHHHHHHHHh----cCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHH
Q 043051 369 A-ANGTDFVE-----MF-----VGVAASRVKDLFASARS----FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQI 433 (845)
Q Consensus 369 ~-vs~sdf~~-----~~-----vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qL 433 (845)
. .+|..+.. .+ ...+...+|.+.+.+.. ....|++|||+|.+. ....+.|+..
T Consensus 75 ~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt------------~~a~naLLk~ 142 (486)
T PRK14953 75 KCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT------------KEAFNALLKT 142 (486)
T ss_pred ccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC------------HHHHHHHHHH
Confidence 0 01111100 00 01233456666665543 234699999999982 2334455555
Q ss_pred HHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHc
Q 043051 434 LTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELT 513 (845)
Q Consensus 434 L~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t 513 (845)
|.+ .+..+++|.+|+.++.+.+++.+ |+ ..+.|.+|+.++....+...++..++.. ++..+..++..+
T Consensus 143 LEe------pp~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~i---d~~al~~La~~s 210 (486)
T PRK14953 143 LEE------PPPRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIEY---EEKALDLLAQAS 210 (486)
T ss_pred Hhc------CCCCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHc
Confidence 544 23346777777778889899998 44 4799999999999999999988777653 455678888888
Q ss_pred cCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 514 EDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 514 ~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
.| +.+++.++++.+... +...||.+++.+++...
T Consensus 211 ~G-~lr~al~~Ldkl~~~----~~~~It~~~V~~~lg~~ 244 (486)
T PRK14953 211 EG-GMRDAASLLDQASTY----GEGKVTIKVVEEFLGIV 244 (486)
T ss_pred CC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHhCCC
Confidence 77 677888888777544 23469999999887655
No 108
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=3e-14 Score=168.42 Aligned_cols=216 Identities=22% Similarity=0.211 Sum_probs=157.6
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEee-----
Q 043051 297 AEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAAN----- 371 (845)
Q Consensus 297 ~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs----- 371 (845)
..++++.+|+||+|++.+++.|...+.. .++|.++||+||+|||||++|+++|+.+.+.....+
T Consensus 15 a~KyRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~ 83 (598)
T PRK09111 15 ARKYRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI 83 (598)
T ss_pred HhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc
Confidence 3568899999999999999988876642 245789999999999999999999999875432111
Q ss_pred --------ch--------hHHHhh--hhhhhhhHHHHHHHHHhc----CCcEEEEcccchhccCCCCCCCCCCchHHHHH
Q 043051 372 --------GT--------DFVEMF--VGVAASRVKDLFASARSF----APSIIFIDEIDAIGSKRGGPDIGGGGAEREQG 429 (845)
Q Consensus 372 --------~s--------df~~~~--vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~ 429 (845)
|. ++.+.- ...+...+|++++.+... ...|++|||+|.+ +....+.
T Consensus 84 ~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~L------------s~~a~na 151 (598)
T PRK09111 84 DLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHML------------STAAFNA 151 (598)
T ss_pred ccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhC------------CHHHHHH
Confidence 11 111100 012346788888777532 2469999999998 2344566
Q ss_pred HHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHH
Q 043051 430 LLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEI 509 (845)
Q Consensus 430 L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~L 509 (845)
|+..|++ .+..+++|.+|+.++.+.+.++++| ..+.|..|+.++....++..++..+... .+..+..|
T Consensus 152 LLKtLEe------Pp~~~~fIl~tte~~kll~tI~SRc---q~~~f~~l~~~el~~~L~~i~~kegi~i---~~eAl~lI 219 (598)
T PRK09111 152 LLKTLEE------PPPHVKFIFATTEIRKVPVTVLSRC---QRFDLRRIEADVLAAHLSRIAAKEGVEV---EDEALALI 219 (598)
T ss_pred HHHHHHh------CCCCeEEEEEeCChhhhhHHHHhhe---eEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHH
Confidence 6666665 2344777778888888888999854 5799999999999999999888776654 44668888
Q ss_pred HHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 510 AELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 510 A~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
+..+.| +.+++.+++..+..+. ...||.+++.+.+...
T Consensus 220 a~~a~G-dlr~al~~Ldkli~~g----~g~It~e~V~~llg~~ 257 (598)
T PRK09111 220 ARAAEG-SVRDGLSLLDQAIAHG----AGEVTAEAVRDMLGLA 257 (598)
T ss_pred HHHcCC-CHHHHHHHHHHHHhhc----CCCcCHHHHHHHhCCC
Confidence 888877 7888888887765442 3469999999877544
No 109
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.61 E-value=1.4e-14 Score=178.47 Aligned_cols=208 Identities=21% Similarity=0.308 Sum_probs=149.0
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeEE
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA----------GVPFFA 369 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el----------g~pfi~ 369 (845)
.++-.++.++|+++..+ .++..|.... ..+++|+||||||||++|+++|..+ +.+++.
T Consensus 167 ~~~~~~~~~igr~~ei~---~~~~~l~r~~---------~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 167 AREGKLDPVIGRDEEIR---RTIQVLSRRT---------KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred hhCCCCCcCCCcHHHHH---HHHHHHhcCC---------CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 45668999999997544 4444443222 3578999999999999999999875 678898
Q ss_pred eechhHH--HhhhhhhhhhHHHHHHHHHhc-CCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCc
Q 043051 370 ANGTDFV--EMFVGVAASRVKDLFASARSF-APSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQ 446 (845)
Q Consensus 370 vs~sdf~--~~~vG~~~~~vr~lF~~A~~~-aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ 446 (845)
++.+.+. .+|.|..+.+++.+|..+... .|+||||||||.|.+.++. .+.....+ +|..+ ...+.
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~----~~~~d~~~----~Lk~~----l~~g~ 302 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKA----EGAMDAGN----MLKPA----LARGE 302 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCC----cchhHHHH----Hhchh----hhcCc
Confidence 8888775 468888899999999998653 5899999999999754321 11122222 23222 13456
Q ss_pred EEEEEEcCCCC-----CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccch-hhhhhHHHHHHHHccCCc---
Q 043051 447 VLVIGATNRLD-----ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSE-EEKDVLLQEIAELTEDFT--- 517 (845)
Q Consensus 447 ViVIaaTN~pd-----~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~-~~~d~dl~~LA~~t~GfS--- 517 (845)
+.+|++|+..+ .+|+++.| ||. .|.++.|+.+++..||+.+......... ...+..+..++..+.+|-
T Consensus 303 i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r 379 (852)
T TIGR03346 303 LHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDR 379 (852)
T ss_pred eEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccccccc
Confidence 99999999875 37999999 997 5899999999999999877655432211 124556677777666553
Q ss_pred --HHHHHHHHHHHHHHHHH
Q 043051 518 --GAELQNILNEAGILTAR 534 (845)
Q Consensus 518 --gaDL~~LvneAal~A~r 534 (845)
+.....++++|+..+..
T Consensus 380 ~lPdkAidlld~a~a~~~~ 398 (852)
T TIGR03346 380 FLPDKAIDLIDEAAARIRM 398 (852)
T ss_pred CCchHHHHHHHHHHHHHHh
Confidence 55777888888765443
No 110
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=3.7e-14 Score=163.22 Aligned_cols=209 Identities=18% Similarity=0.225 Sum_probs=145.6
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVP----------- 366 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~p----------- 366 (845)
++++|.+|+||+|++.+++.|...+.. .+.|..+|||||||||||++|+++|+.+.++
T Consensus 9 ~kyRP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~ 77 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQ 77 (451)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcc
Confidence 457899999999999999887776642 2357789999999999999999999987542
Q ss_pred --------------eEEeechhHHHhhhhhhhhhHHHHHHHHH----hcCCcEEEEcccchhccCCCCCCCCCCchHHHH
Q 043051 367 --------------FFAANGTDFVEMFVGVAASRVKDLFASAR----SFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQ 428 (845)
Q Consensus 367 --------------fi~vs~sdf~~~~vG~~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~ 428 (845)
++.+++.. ..+...++.+.+... .....||+|||+|.+. .+..+
T Consensus 78 c~~C~~i~~~~~~d~~~i~g~~------~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt------------~~~~n 139 (451)
T PRK06305 78 CASCKEISSGTSLDVLEIDGAS------HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT------------KEAFN 139 (451)
T ss_pred cHHHHHHhcCCCCceEEeeccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC------------HHHHH
Confidence 22232211 012234554443332 1245799999999982 23445
Q ss_pred HHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHH
Q 043051 429 GLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQE 508 (845)
Q Consensus 429 ~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~ 508 (845)
.|+..+++ .++.+++|++||.+..|.++|.++| ..+.|..++.++..+.+...++..+... ++..+..
T Consensus 140 ~LLk~lEe------p~~~~~~Il~t~~~~kl~~tI~sRc---~~v~f~~l~~~el~~~L~~~~~~eg~~i---~~~al~~ 207 (451)
T PRK06305 140 SLLKTLEE------PPQHVKFFLATTEIHKIPGTILSRC---QKMHLKRIPEETIIDKLALIAKQEGIET---SREALLP 207 (451)
T ss_pred HHHHHhhc------CCCCceEEEEeCChHhcchHHHHhc---eEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHH
Confidence 55555554 2345778888888899999999944 4789999999999999988887666543 4556888
Q ss_pred HHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 509 IAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 509 LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
|+..+.| +.+++.+.+..+... .+ ..|+.+++.+++.+.
T Consensus 208 L~~~s~g-dlr~a~~~Lekl~~~---~~-~~It~~~V~~l~~~~ 246 (451)
T PRK06305 208 IARAAQG-SLRDAESLYDYVVGL---FP-KSLDPDSVAKALGLL 246 (451)
T ss_pred HHHHcCC-CHHHHHHHHHHHHHh---cc-CCcCHHHHHHHHCCC
Confidence 8888776 555555555544332 23 449999988877554
No 111
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2e-14 Score=163.15 Aligned_cols=219 Identities=19% Similarity=0.200 Sum_probs=149.8
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCe-E--------
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPF-F-------- 368 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pf-i-------- 368 (845)
++++|.+|++|+|++.+++.|...+.. .+.|..+||+||||||||++|+++|+.+.+.- .
T Consensus 8 ~k~RP~~~~eiiGq~~~~~~L~~~~~~-----------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~ 76 (397)
T PRK14955 8 RKYRPKKFADITAQEHITRTIQNSLRM-----------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE 76 (397)
T ss_pred HhcCCCcHhhccChHHHHHHHHHHHHh-----------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc
Confidence 458899999999999999988776542 24577899999999999999999999987631 0
Q ss_pred -Eeech------hHHH-------hhhh---hhhhhHHHHHHHHHhc----CCcEEEEcccchhccCCCCCCCCCCchHHH
Q 043051 369 -AANGT------DFVE-------MFVG---VAASRVKDLFASARSF----APSIIFIDEIDAIGSKRGGPDIGGGGAERE 427 (845)
Q Consensus 369 -~vs~s------df~~-------~~vG---~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~ 427 (845)
.-.|. .+.. .+.| .+...++++.+.+... ...|++|||+|.+. ....
T Consensus 77 ~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~------------~~~~ 144 (397)
T PRK14955 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS------------IAAF 144 (397)
T ss_pred CCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC------------HHHH
Confidence 00111 1100 0111 1245667666655321 23599999999982 2334
Q ss_pred HHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHH
Q 043051 428 QGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQ 507 (845)
Q Consensus 428 ~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~ 507 (845)
+.|+..+++ .+...++|.+|+.+..+-+++.+ |. ..+.|..++.++..+.+...+...+... ++..++
T Consensus 145 ~~LLk~LEe------p~~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i---~~~al~ 212 (397)
T PRK14955 145 NAFLKTLEE------PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISV---DADALQ 212 (397)
T ss_pred HHHHHHHhc------CCCCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHH
Confidence 455555544 23346666677777888889988 44 3789999999999988888887665443 456688
Q ss_pred HHHHHccCCcHHHHHHHHHHHHHHHHH-cCCCccCHHHHHHHHHhc
Q 043051 508 EIAELTEDFTGAELQNILNEAGILTAR-KDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 508 ~LA~~t~GfSgaDL~~LvneAal~A~r-~~~~~It~edl~~Al~r~ 552 (845)
.++..+.| +.+.+.+.++.+..++.. .....|+.+++.+.+.+.
T Consensus 213 ~l~~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v~~~ 257 (397)
T PRK14955 213 LIGRKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELLNYI 257 (397)
T ss_pred HHHHHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHHCCC
Confidence 88888876 677777777766655532 234579999998877544
No 112
>PRK08727 hypothetical protein; Validated
Probab=99.60 E-value=1.1e-13 Score=146.38 Aligned_cols=211 Identities=19% Similarity=0.213 Sum_probs=141.6
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHH
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFV 376 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~ 376 (845)
.+..+|+++++.... .+..+..... + .....++|+||+|||||+|+.|++.++ +....+++..++.
T Consensus 13 ~~~~~f~~f~~~~~n--~~~~~~~~~~--------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~ 81 (233)
T PRK08727 13 PSDQRFDSYIAAPDG--LLAQLQALAA--------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA 81 (233)
T ss_pred CCcCChhhccCCcHH--HHHHHHHHHh--------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh
Confidence 456789998875542 1211111111 1 123569999999999999999997664 6677777766644
Q ss_pred HhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCC
Q 043051 377 EMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRL 456 (845)
Q Consensus 377 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~p 456 (845)
.. +.+.++... ...+|+|||+|.+..+ ...+..+..++..... .+.-+|+++...|
T Consensus 82 ~~--------~~~~~~~l~--~~dlLiIDDi~~l~~~----------~~~~~~lf~l~n~~~~----~~~~vI~ts~~~p 137 (233)
T PRK08727 82 GR--------LRDALEALE--GRSLVALDGLESIAGQ----------REDEVALFDFHNRARA----AGITLLYTARQMP 137 (233)
T ss_pred hh--------HHHHHHHHh--cCCEEEEeCcccccCC----------hHHHHHHHHHHHHHHH----cCCeEEEECCCCh
Confidence 32 233444333 3469999999988432 2335566677666421 2223444444566
Q ss_pred CCC---ChhhhccCcc--cEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 043051 457 DIL---DPALLRKGRF--DKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGIL 531 (845)
Q Consensus 457 d~L---DpALlRpgRF--dr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~ 531 (845)
..+ +++|.+ || ..++.++.|+.+++.+|++.++...++.. ++..++.|+..+.| +.+.+.++++.....
T Consensus 138 ~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l---~~e~~~~La~~~~r-d~r~~l~~L~~l~~~ 211 (233)
T PRK08727 138 DGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLAL---DEAAIDWLLTHGER-ELAGLVALLDRLDRE 211 (233)
T ss_pred hhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhCCC-CHHHHHHHHHHHHHH
Confidence 655 799999 65 56889999999999999999887666654 56678899999886 666777777766544
Q ss_pred HHHcCCCccCHHHHHHHHHhc
Q 043051 532 TARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 532 A~r~~~~~It~edl~~Al~r~ 552 (845)
+...+ ..||...+++.+.+.
T Consensus 212 ~~~~~-~~it~~~~~~~l~~~ 231 (233)
T PRK08727 212 SLAAK-RRVTVPFLRRVLEEG 231 (233)
T ss_pred HHHhC-CCCCHHHHHHHHhhc
Confidence 44444 479999999988754
No 113
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.60 E-value=5.7e-14 Score=153.47 Aligned_cols=211 Identities=25% Similarity=0.278 Sum_probs=143.4
Q ss_pred ccccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC-----CCeE
Q 043051 294 FISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAG-----VPFF 368 (845)
Q Consensus 294 ~~~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg-----~pfi 368 (845)
..|.++++|.+|+|++|++++++.|...+. ... ..+++|+||||||||++|+++++++. ..++
T Consensus 5 ~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~---~~~---------~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i 72 (319)
T PRK00440 5 EIWVEKYRPRTLDEIVGQEEIVERLKSYVK---EKN---------MPHLLFAGPPGTGKTTAALALARELYGEDWRENFL 72 (319)
T ss_pred CccchhhCCCcHHHhcCcHHHHHHHHHHHh---CCC---------CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceE
Confidence 567788999999999999999888777653 111 22589999999999999999999873 3455
Q ss_pred EeechhHHHhhhhhhhhhHHHHHHH-HHh-----cCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcc
Q 043051 369 AANGTDFVEMFVGVAASRVKDLFAS-ARS-----FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKV 442 (845)
Q Consensus 369 ~vs~sdf~~~~vG~~~~~vr~lF~~-A~~-----~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~ 442 (845)
.+++++-.. ...++..+.. +.. ..+.+|+|||+|.+. ...+..|..++...
T Consensus 73 ~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~------------~~~~~~L~~~le~~----- 129 (319)
T PRK00440 73 ELNASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLT------------SDAQQALRRTMEMY----- 129 (319)
T ss_pred Eeccccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCC------------HHHHHHHHHHHhcC-----
Confidence 555543211 1112222222 211 234699999999982 23345565555442
Q ss_pred cCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHH
Q 043051 443 STSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQ 522 (845)
Q Consensus 443 ~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~ 522 (845)
.....+|.++|.+..+.+++.+ |+. .+.+++|+.++...+++.++...+... .+..+..++..+.| +.+.+.
T Consensus 130 -~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i---~~~al~~l~~~~~g-d~r~~~ 201 (319)
T PRK00440 130 -SQNTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEI---TDDALEAIYYVSEG-DMRKAI 201 (319)
T ss_pred -CCCCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCC-CHHHHH
Confidence 1224566677777878788888 554 689999999999999999998776653 45568888888765 444454
Q ss_pred HHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 523 NILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 523 ~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
+.+..++ .. ...||.+++..++...
T Consensus 202 ~~l~~~~---~~--~~~it~~~v~~~~~~~ 226 (319)
T PRK00440 202 NALQAAA---AT--GKEVTEEAVYKITGTA 226 (319)
T ss_pred HHHHHHH---Hc--CCCCCHHHHHHHhCCC
Confidence 5444433 22 3579999999887654
No 114
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=4.6e-14 Score=166.05 Aligned_cols=209 Identities=17% Similarity=0.233 Sum_probs=150.6
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVP----------- 366 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~p----------- 366 (845)
.+++|.+|+||+|++.+++.|...+.. .+.|..+|||||||+|||++|+++|+.+.++
T Consensus 8 ~kyRP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 8 TKRRPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 357899999999999999988776642 2346789999999999999999999988652
Q ss_pred -------------eEEeechhHHHhhhhhhhhhHHHHHHHHHh----cCCcEEEEcccchhccCCCCCCCCCCchHHHHH
Q 043051 367 -------------FFAANGTDFVEMFVGVAASRVKDLFASARS----FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQG 429 (845)
Q Consensus 367 -------------fi~vs~sdf~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~ 429 (845)
++.+++.. ..+...++++.+.+.. ....|++|||+|.+ +....+.
T Consensus 77 ~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L------------s~~a~na 138 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML------------SNSAFNA 138 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc------------CHHHHHH
Confidence 11121110 0123456666554432 23469999999998 2233444
Q ss_pred HHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHH
Q 043051 430 LLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEI 509 (845)
Q Consensus 430 L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~L 509 (845)
|+..+++ .+..+++|.+|+.+..|.++|++ |+ ..+.|.+++.++..+.++..+...+... .+..+..|
T Consensus 139 LLK~LEe------pp~~~vfI~~tte~~kL~~tI~S--Rc-~~~~f~~l~~~el~~~L~~i~~~egi~i---d~eAl~lL 206 (563)
T PRK06647 139 LLKTIEE------PPPYIVFIFATTEVHKLPATIKS--RC-QHFNFRLLSLEKIYNMLKKVCLEDQIKY---EDEALKWI 206 (563)
T ss_pred HHHhhcc------CCCCEEEEEecCChHHhHHHHHH--hc-eEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHH
Confidence 4444443 34558888888888999999999 44 4789999999999999998887766543 45678889
Q ss_pred HHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 510 AELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 510 A~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
+..+.| +.+++.+++..+..++ ...|+.+++.+++...
T Consensus 207 a~~s~G-dlR~alslLdklis~~----~~~It~e~V~~llg~~ 244 (563)
T PRK06647 207 AYKSTG-SVRDAYTLFDQVVSFS----DSDITLEQIRSKMGLT 244 (563)
T ss_pred HHHcCC-CHHHHHHHHHHHHhhc----CCCCCHHHHHHHhCCC
Confidence 988887 7888888887765443 2458999988877544
No 115
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.58 E-value=1.9e-13 Score=143.28 Aligned_cols=203 Identities=22% Similarity=0.340 Sum_probs=133.7
Q ss_pred CCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeEEeechhH
Q 043051 301 TGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA-----GVPFFAANGTDF 375 (845)
Q Consensus 301 ~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el-----g~pfi~vs~sdf 375 (845)
+..||++++-.+.-+..+..+.....++.. ...+++||||+|+|||+|.+|+++++ +..++++++.+|
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~~~-------~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f 75 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENPGE-------RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEF 75 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHSTTT-------SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHH
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcCCC-------CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHH
Confidence 578999997433333333332222333221 22468999999999999999998874 678999999999
Q ss_pred HHhhhhhhhh-hHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcC
Q 043051 376 VEMFVGVAAS-RVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATN 454 (845)
Q Consensus 376 ~~~~vG~~~~-~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN 454 (845)
...+...-.. .+..+.+..+ ...+|+||++|.+.. ....+..+..++..+. ..++.+||++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~----------~~~~q~~lf~l~n~~~----~~~k~li~ts~~ 139 (219)
T PF00308_consen 76 IREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAG----------KQRTQEELFHLFNRLI----ESGKQLILTSDR 139 (219)
T ss_dssp HHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTT----------HHHHHHHHHHHHHHHH----HTTSEEEEEESS
T ss_pred HHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcC----------chHHHHHHHHHHHHHH----hhCCeEEEEeCC
Confidence 8776553322 2333333322 346999999999942 3445677777777752 234467777766
Q ss_pred CCCC---CChhhhccCcc--cEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHH
Q 043051 455 RLDI---LDPALLRKGRF--DKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAG 529 (845)
Q Consensus 455 ~pd~---LDpALlRpgRF--dr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAa 529 (845)
.|.. +++.|.+ || ...+.+..|+.+.|.+|++..+...++.. ++..++.|++..++ +.++|..+++...
T Consensus 140 ~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l---~~~v~~~l~~~~~~-~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 140 PPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIEL---PEEVIEYLARRFRR-DVRELEGALNRLD 213 (219)
T ss_dssp -TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S----HHHHHHHHHHTTS-SHHHHHHHHHHHH
T ss_pred CCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCC---cHHHHHHHHHhhcC-CHHHHHHHHHHHH
Confidence 6665 4788988 65 45899999999999999999999888775 56678889998776 8889999888776
Q ss_pred HHH
Q 043051 530 ILT 532 (845)
Q Consensus 530 l~A 532 (845)
.++
T Consensus 214 ~~~ 216 (219)
T PF00308_consen 214 AYA 216 (219)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 116
>PRK05642 DNA replication initiation factor; Validated
Probab=99.58 E-value=1.6e-13 Score=145.13 Aligned_cols=213 Identities=17% Similarity=0.224 Sum_probs=145.3
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHH
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFV 376 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~ 376 (845)
.+..||++++.... ......+..+.. ..+.....+++||||+|||||+|++|+++++ +..+++++..+|.
T Consensus 13 ~~~~tfdnF~~~~~--~~a~~~~~~~~~-----~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~ 85 (234)
T PRK05642 13 RDDATFANYYPGAN--AAALGYVERLCE-----ADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELL 85 (234)
T ss_pred CCcccccccCcCCh--HHHHHHHHHHhh-----ccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHH
Confidence 45678999884322 222222222111 1111224679999999999999999998764 6788899988876
Q ss_pred HhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCC
Q 043051 377 EMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRL 456 (845)
Q Consensus 377 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~p 456 (845)
... ..+.+..+. ..+|+|||++.+..+ ...+..|..+++.+. ..++.++|+++..|
T Consensus 86 ~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~----------~~~~~~Lf~l~n~~~----~~g~~ilits~~~p 141 (234)
T PRK05642 86 DRG--------PELLDNLEQ--YELVCLDDLDVIAGK----------ADWEEALFHLFNRLR----DSGRRLLLAASKSP 141 (234)
T ss_pred hhh--------HHHHHhhhh--CCEEEEechhhhcCC----------hHHHHHHHHHHHHHH----hcCCEEEEeCCCCH
Confidence 531 223333332 258999999988432 233556777776642 23457777777666
Q ss_pred CCC---ChhhhccCcc--cEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 043051 457 DIL---DPALLRKGRF--DKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGIL 531 (845)
Q Consensus 457 d~L---DpALlRpgRF--dr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~ 531 (845)
..+ .|.|.+ || ...+.+..|+.++|.++++..+...++.. ++..++.|++...+ +.+.+.++++.....
T Consensus 142 ~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l---~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~ 215 (234)
T PRK05642 142 RELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHL---TDEVGHFILTRGTR-SMSALFDLLERLDQA 215 (234)
T ss_pred HHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 543 699999 66 56888999999999999997776655544 46778899999887 899999999877654
Q ss_pred HHHcCCCccCHHHHHHHHH
Q 043051 532 TARKDLDYIGQEELLEALK 550 (845)
Q Consensus 532 A~r~~~~~It~edl~~Al~ 550 (845)
+.. .+..||..-+++++.
T Consensus 216 ~l~-~~~~it~~~~~~~L~ 233 (234)
T PRK05642 216 SLQ-AQRKLTIPFLKETLG 233 (234)
T ss_pred HHH-cCCcCCHHHHHHHhc
Confidence 444 336699988888764
No 117
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.58 E-value=1.4e-14 Score=166.72 Aligned_cols=214 Identities=19% Similarity=0.221 Sum_probs=164.6
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCe--EEeec----
Q 043051 299 ETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPF--FAANG---- 372 (845)
Q Consensus 299 ~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pf--i~vs~---- 372 (845)
++++.+|+||+|++.+...|...+..-+. +.+.||+||.|||||++||.+|+.+++.- ..-.|
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~~ri-----------~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~ 77 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALENGRI-----------AHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI 77 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHhCcc-----------hhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence 48899999999999999999988865443 45789999999999999999999887642 11111
Q ss_pred ----------hhHHHh--hhhhhhhhHHHHHHHHHh----cCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHh
Q 043051 373 ----------TDFVEM--FVGVAASRVKDLFASARS----FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTE 436 (845)
Q Consensus 373 ----------sdf~~~--~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~e 436 (845)
.|+++. -...+.+.+|++.+.+.. ....|.+|||+|.|. .+.+|.||..
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS---------------~~afNALLKT 142 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS---------------KQAFNALLKT 142 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh---------------HHHHHHHhcc
Confidence 122221 122356778888888743 123599999999992 3455556555
Q ss_pred hcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCC
Q 043051 437 MDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDF 516 (845)
Q Consensus 437 mdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~Gf 516 (845)
+. .++.+|++|.||..+..+++.++++| .++.|...+.++....|...+.+.++.. .+..+..+|+...|
T Consensus 143 LE---EPP~hV~FIlATTe~~Kip~TIlSRc---q~f~fkri~~~~I~~~L~~i~~~E~I~~---e~~aL~~ia~~a~G- 212 (515)
T COG2812 143 LE---EPPSHVKFILATTEPQKIPNTILSRC---QRFDFKRLDLEEIAKHLAAILDKEGINI---EEDALSLIARAAEG- 212 (515)
T ss_pred cc---cCccCeEEEEecCCcCcCchhhhhcc---ccccccCCCHHHHHHHHHHHHHhcCCcc---CHHHHHHHHHHcCC-
Confidence 42 36677999999999999999999966 5788999999999999999998888775 46678999999998
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 517 TGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 517 SgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
|.+|..++++.|..... ..|+.+.+...+.-+
T Consensus 213 s~RDalslLDq~i~~~~----~~It~~~v~~~lG~~ 244 (515)
T COG2812 213 SLRDALSLLDQAIAFGE----GEITLESVRDMLGLT 244 (515)
T ss_pred ChhhHHHHHHHHHHccC----CcccHHHHHHHhCCC
Confidence 89999999999865432 568888888877655
No 118
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.58 E-value=2e-13 Score=157.27 Aligned_cols=224 Identities=15% Similarity=0.238 Sum_probs=154.1
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeEEeechhHH
Q 043051 302 GVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA-----GVPFFAANGTDFV 376 (845)
Q Consensus 302 ~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el-----g~pfi~vs~sdf~ 376 (845)
+.||++++..+.-...+..+.....+|. ....+++|||++|||||+|++|+++++ +..++++++.+|.
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~-------~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~ 183 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNPG-------ISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA 183 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCcC-------cccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 5789998844433333333322233322 123579999999999999999999854 5788999999988
Q ss_pred Hhhhhhhhh---hHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEc
Q 043051 377 EMFVGVAAS---RVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGAT 453 (845)
Q Consensus 377 ~~~vG~~~~---~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaT 453 (845)
..+...-.. .+..+.+.. ..+.+|+|||++.+.. ....+..|..++..+.. .++.+||++.
T Consensus 184 ~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~~----------k~~~~e~lf~l~N~~~~----~~k~iIltsd 247 (450)
T PRK14087 184 RKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLSY----------KEKTNEIFFTIFNNFIE----NDKQLFFSSD 247 (450)
T ss_pred HHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccccC----------CHHHHHHHHHHHHHHHH----cCCcEEEECC
Confidence 776543221 222222222 2456999999999843 23445566666666422 2334555544
Q ss_pred CCCCC---CChhhhccCcc--cEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHH
Q 043051 454 NRLDI---LDPALLRKGRF--DKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEA 528 (845)
Q Consensus 454 N~pd~---LDpALlRpgRF--dr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneA 528 (845)
..|.. +++.|.+ || ..++.+..|+.++|.+||+..+...++.. ..++..+..||..+.| +.+.+.++++.+
T Consensus 248 ~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~-~l~~evl~~Ia~~~~g-d~R~L~gaL~~l 323 (450)
T PRK14087 248 KSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQ-EVTEEAINFISNYYSD-DVRKIKGSVSRL 323 (450)
T ss_pred CCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHccCC-CHHHHHHHHHHH
Confidence 44543 5889999 76 45889999999999999999998765321 2356778999999988 899999999988
Q ss_pred HHHHHHcC-CCccCHHHHHHHHHhc
Q 043051 529 GILTARKD-LDYIGQEELLEALKRQ 552 (845)
Q Consensus 529 al~A~r~~-~~~It~edl~~Al~r~ 552 (845)
...+.... ...||.+.+++++...
T Consensus 324 ~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 324 NFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHhcccCCCCCCHHHHHHHHhhc
Confidence 76665543 2679999999999765
No 119
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.58 E-value=7e-14 Score=158.84 Aligned_cols=222 Identities=30% Similarity=0.372 Sum_probs=138.7
Q ss_pred ccccHHHHHHHHHHHHH-hhCcHHHhhc--CC-CCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH-hhhhh
Q 043051 308 FAGQEYIKRELQEIVRI-LKNDEEFQNK--GI-YCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE-MFVGV 382 (845)
Q Consensus 308 VvG~de~k~eL~eiv~~-Lk~p~~~~~~--g~-~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~-~~vG~ 382 (845)
|+|++.+|+.|...+.. ++.-...... .. ....++||+||||||||++|+++|..+++||+.++++.+.+ .|+|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 89999999999765522 1111000000 11 13468999999999999999999999999999999998764 46776
Q ss_pred hhhh-HHHHHHHH----HhcCCcEEEEcccchhccCCCCCCC--CCCchHHHHHHHHHHHhh-------cCCcccCCcEE
Q 043051 383 AASR-VKDLFASA----RSFAPSIIFIDEIDAIGSKRGGPDI--GGGGAEREQGLLQILTEM-------DGFKVSTSQVL 448 (845)
Q Consensus 383 ~~~~-vr~lF~~A----~~~aP~ILfIDEIDaL~~~R~~~~~--~~~~~e~~~~L~qLL~em-------dg~~~~~~~Vi 448 (845)
.... +..++..+ ....++||||||||.+..++...+. ..+....++.|+++|+.- .|-.......+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 4433 34444332 2346799999999999876332111 112235678888888531 11111122355
Q ss_pred EEEEcCCCC----------------------------------------------------CCChhhhccCcccEEEEeC
Q 043051 449 VIGATNRLD----------------------------------------------------ILDPALLRKGRFDKIVRVG 476 (845)
Q Consensus 449 VIaaTN~pd----------------------------------------------------~LDpALlRpgRFdr~I~v~ 476 (845)
+|.|+|... .+.|+++ ||+|.++.|.
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv~f~ 310 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVATLE 310 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeeeecC
Confidence 566655411 0234444 5999999999
Q ss_pred CCCHhHHHHHHHH----HHh-------hhcccchhhhhhHHHHHHHH--ccCCcHHHHHHHHHHHHHHH
Q 043051 477 LPSKDGRFAILKV----HAR-------NKYFRSEEEKDVLLQEIAEL--TEDFTGAELQNILNEAGILT 532 (845)
Q Consensus 477 ~Pd~eeR~eIL~~----~l~-------~~~l~~~~~~d~dl~~LA~~--t~GfSgaDL~~LvneAal~A 532 (845)
..+.++..+|+.. .++ ..+... ...+..++.|++. ..++-.+.|+.+++....-.
T Consensus 311 ~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L-~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~ 378 (412)
T PRK05342 311 ELDEEALVRILTEPKNALVKQYQKLFEMDGVEL-EFTDEALEAIAKKAIERKTGARGLRSILEEILLDV 378 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEE-EECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHH
Confidence 9999999999973 222 112221 1245567778875 44555667777777654433
No 120
>PRK06620 hypothetical protein; Validated
Probab=99.57 E-value=1.3e-13 Score=144.00 Aligned_cols=199 Identities=16% Similarity=0.186 Sum_probs=134.0
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCC-CceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHh
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYC-PKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM 378 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~-PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~ 378 (845)
.++.+|++++-.+.-...+..+..+...+ +..+ -+.++||||||||||+|++++++..+..++. ...+.
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~~-- 79 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQCGF------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFFN-- 79 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHHcc------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhhc--
Confidence 45778999886654443333333332211 2112 1679999999999999999999988764332 11110
Q ss_pred hhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCC
Q 043051 379 FVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDI 458 (845)
Q Consensus 379 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~ 458 (845)
...+ . ...+|+|||||.+ . +..|..++..+. ..++.++|+++..|..
T Consensus 80 ---------~~~~----~-~~d~lliDdi~~~------------~---~~~lf~l~N~~~----e~g~~ilits~~~p~~ 126 (214)
T PRK06620 80 ---------EEIL----E-KYNAFIIEDIENW------------Q---EPALLHIFNIIN----EKQKYLLLTSSDKSRN 126 (214)
T ss_pred ---------hhHH----h-cCCEEEEeccccc------------h---HHHHHHHHHHHH----hcCCEEEEEcCCCccc
Confidence 1111 1 2368999999955 1 124445554432 2345788888866654
Q ss_pred --CChhhhccCccc--EEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Q 043051 459 --LDPALLRKGRFD--KIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTAR 534 (845)
Q Consensus 459 --LDpALlRpgRFd--r~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r 534 (845)
+ |+|++ |+. .++.+..|+.+.+..+++.++...++.. ++..++.|+....| +.+.+.++++.....+..
T Consensus 127 l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l---~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~ 199 (214)
T PRK06620 127 FTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTI---SRQIIDFLLVNLPR-EYSKIIEILENINYFALI 199 (214)
T ss_pred cch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHH
Confidence 5 88998 654 4799999999999999999988766554 56778999999887 888899888876544444
Q ss_pred cCCCccCHHHHHHHH
Q 043051 535 KDLDYIGQEELLEAL 549 (845)
Q Consensus 535 ~~~~~It~edl~~Al 549 (845)
.+ ..||...+++++
T Consensus 200 ~~-~~it~~~~~~~l 213 (214)
T PRK06620 200 SK-RKITISLVKEVL 213 (214)
T ss_pred cC-CCCCHHHHHHHh
Confidence 33 569999888876
No 121
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=9.9e-14 Score=164.94 Aligned_cols=214 Identities=19% Similarity=0.222 Sum_probs=149.2
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEE----ee--
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFA----AN-- 371 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~----vs-- 371 (845)
+++++.+|++++|++.+++.|...+..- +.+.++||+||||||||++|+++|+.+++.... -.
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 4588999999999999999888877532 235689999999999999999999998763110 01
Q ss_pred -ch-----------hHH--HhhhhhhhhhHHHHHHHHHhc----CCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHH
Q 043051 372 -GT-----------DFV--EMFVGVAASRVKDLFASARSF----APSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQI 433 (845)
Q Consensus 372 -~s-----------df~--~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qL 433 (845)
|. ++. +...+.+...+|++++.+... ...|++|||+|.| +.+..+.|+..
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L------------t~~a~naLLK~ 144 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHML------------STAAFNALLKT 144 (620)
T ss_pred ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc------------CHHHHHHHHHH
Confidence 11 110 011123456788888877532 2359999999998 23445555555
Q ss_pred HHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHc
Q 043051 434 LTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELT 513 (845)
Q Consensus 434 L~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t 513 (845)
|++ ....+++|++|+.++.+-+.|+++| ..+.|..++.++....+...+.+.+... ....+..++..+
T Consensus 145 LEe------Pp~~tvfIL~t~~~~~llpTIrSRc---~~~~f~~l~~~ei~~~L~~ia~kegi~i---s~~al~~La~~s 212 (620)
T PRK14948 145 LEE------PPPRVVFVLATTDPQRVLPTIISRC---QRFDFRRIPLEAMVQHLSEIAEKESIEI---EPEALTLVAQRS 212 (620)
T ss_pred Hhc------CCcCeEEEEEeCChhhhhHHHHhhe---eEEEecCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHc
Confidence 554 3455788888888888999999844 5789999999988888887777655443 345588888888
Q ss_pred cCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 514 EDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 514 ~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
.| +.+++.++++...++ . ..|+.+++.+.+...
T Consensus 213 ~G-~lr~A~~lLeklsL~---~--~~It~e~V~~lvg~~ 245 (620)
T PRK14948 213 QG-GLRDAESLLDQLSLL---P--GPITPEAVWDLLGAV 245 (620)
T ss_pred CC-CHHHHHHHHHHHHhc---c--CCCCHHHHHHHhcCC
Confidence 77 556676776654443 1 358888777655433
No 122
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=1.1e-13 Score=164.11 Aligned_cols=219 Identities=20% Similarity=0.221 Sum_probs=151.0
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEE--------
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFA-------- 369 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~-------- 369 (845)
.++++.+|++|+|++.+++.|...+.. .+.|.++||+||||||||++|+++|+.+.+.--.
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~~-----------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~ 76 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLRM-----------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE 76 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc
Confidence 458899999999999999988775532 2457789999999999999999999998763100
Q ss_pred --eec------hhHHH-------hhhh---hhhhhHHHHHHHHHh----cCCcEEEEcccchhccCCCCCCCCCCchHHH
Q 043051 370 --ANG------TDFVE-------MFVG---VAASRVKDLFASARS----FAPSIIFIDEIDAIGSKRGGPDIGGGGAERE 427 (845)
Q Consensus 370 --vs~------sdf~~-------~~vG---~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~ 427 (845)
-.| ..+.. .+.| .+...|+++.+.+.. ....|++|||+|.+ +....
T Consensus 77 ~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~L------------t~~a~ 144 (620)
T PRK14954 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHML------------STAAF 144 (620)
T ss_pred cCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhc------------CHHHH
Confidence 011 11100 0111 124567776666532 12359999999998 23345
Q ss_pred HHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHH
Q 043051 428 QGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQ 507 (845)
Q Consensus 428 ~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~ 507 (845)
+.|+..|++ .+..+++|.+|+.+..|.+.|.++| ..+.|..++.++....+...+...+... ++..++
T Consensus 145 naLLK~LEe------Pp~~tv~IL~t~~~~kLl~TI~SRc---~~vef~~l~~~ei~~~L~~i~~~egi~I---~~eal~ 212 (620)
T PRK14954 145 NAFLKTLEE------PPPHAIFIFATTELHKIPATIASRC---QRFNFKRIPLDEIQSQLQMICRAEGIQI---DADALQ 212 (620)
T ss_pred HHHHHHHhC------CCCCeEEEEEeCChhhhhHHHHhhc---eEEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHH
Confidence 566666655 2344666667777888989999855 5899999999999988888777655543 456688
Q ss_pred HHHHHccCCcHHHHHHHHHHHHHHHHH-cCCCccCHHHHHHHHHhc
Q 043051 508 EIAELTEDFTGAELQNILNEAGILTAR-KDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 508 ~LA~~t~GfSgaDL~~LvneAal~A~r-~~~~~It~edl~~Al~r~ 552 (845)
.++..+.| +.+++.+.++....++.. .....|+.+++.+.+...
T Consensus 213 ~La~~s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv~~~ 257 (620)
T PRK14954 213 LIARKAQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELLNYI 257 (620)
T ss_pred HHHHHhCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHHcCC
Confidence 88888876 666666666665555421 224579998888877554
No 123
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.56 E-value=1.2e-13 Score=163.86 Aligned_cols=218 Identities=20% Similarity=0.147 Sum_probs=142.0
Q ss_pred ccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-------C---CCeEEeechhH
Q 043051 306 DDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA-------G---VPFFAANGTDF 375 (845)
Q Consensus 306 ~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el-------g---~pfi~vs~sdf 375 (845)
+.|.|.++..++|..++...-. |..+...++|+|+||||||++++.+.+++ + +.+++++|..+
T Consensus 755 D~LPhREeEIeeLasfL~paIk-------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L 827 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK-------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV 827 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh-------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc
Confidence 5677887777766665544211 11222345799999999999999997765 2 56789999543
Q ss_pred HHh----------hh------h-hhhhhHHHHHHHHHh--cCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHh
Q 043051 376 VEM----------FV------G-VAASRVKDLFASARS--FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTE 436 (845)
Q Consensus 376 ~~~----------~v------G-~~~~~vr~lF~~A~~--~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~e 436 (845)
... +. | .....+..+|..... ....||+|||||.|..+ .+..|+.|+..
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK------------~QDVLYnLFR~ 895 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK------------TQKVLFTLFDW 895 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc------------HHHHHHHHHHH
Confidence 321 10 1 122345566665422 23569999999999532 24556666664
Q ss_pred hcCCcccCCcEEEEEEcCC---CCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHc
Q 043051 437 MDGFKVSTSQVLVIGATNR---LDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELT 513 (845)
Q Consensus 437 mdg~~~~~~~ViVIaaTN~---pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t 513 (845)
.. ....+++||+++|. ++.|+|.+.++..+. .+.|++++.+++.+||+..+.... ....+..++.+|+..
T Consensus 896 ~~---~s~SKLiLIGISNdlDLperLdPRLRSRLg~e-eIvF~PYTaEQL~dILk~RAe~A~---gVLdDdAIELIArkV 968 (1164)
T PTZ00112 896 PT---KINSKLVLIAISNTMDLPERLIPRCRSRLAFG-RLVFSPYKGDEIEKIIKERLENCK---EIIDHTAIQLCARKV 968 (1164)
T ss_pred hh---ccCCeEEEEEecCchhcchhhhhhhhhccccc-cccCCCCCHHHHHHHHHHHHHhCC---CCCCHHHHHHHHHhh
Confidence 32 23456999999986 556788998843332 478899999999999999887532 122455677777755
Q ss_pred cCC--cHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 514 EDF--TGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 514 ~Gf--SgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
... ..+..-++|+.|+.. .+...|+.+|+.+|+.+.
T Consensus 969 Aq~SGDARKALDILRrAgEi---kegskVT~eHVrkAleei 1006 (1164)
T PTZ00112 969 ANVSGDIRKALQICRKAFEN---KRGQKIVPRDITEATNQL 1006 (1164)
T ss_pred hhcCCHHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHHH
Confidence 432 233444555566543 344589999999999776
No 124
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.55 E-value=1.4e-13 Score=154.48 Aligned_cols=179 Identities=31% Similarity=0.394 Sum_probs=124.0
Q ss_pred cccccHHHHHHHHHHHHH-hhCcHHHhhc-CCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH-hhhh-h
Q 043051 307 DFAGQEYIKRELQEIVRI-LKNDEEFQNK-GIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE-MFVG-V 382 (845)
Q Consensus 307 dVvG~de~k~eL~eiv~~-Lk~p~~~~~~-g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~-~~vG-~ 382 (845)
-|+|++++|+.+...+.. .+.......+ +-..|+++||+||||||||++|+++|+.++.||+.++++.|.+ .|+| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 489999999998765542 1111100011 1235799999999999999999999999999999999987764 5666 3
Q ss_pred hhhhHHHHHHHH--------------------------------------------------------------------
Q 043051 383 AASRVKDLFASA-------------------------------------------------------------------- 394 (845)
Q Consensus 383 ~~~~vr~lF~~A-------------------------------------------------------------------- 394 (845)
.+..++.+|+.|
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 445555555554
Q ss_pred -----------------------------------------------------------------------HhcCCcEEE
Q 043051 395 -----------------------------------------------------------------------RSFAPSIIF 403 (845)
Q Consensus 395 -----------------------------------------------------------------------~~~aP~ILf 403 (845)
+....+|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 001347999
Q ss_pred EcccchhccCCCCCCCCCCchHHHHHHHHHHHh----hcCCcccCCcEEEEEEcC----CCCCCChhhhccCcccEEEEe
Q 043051 404 IDEIDAIGSKRGGPDIGGGGAEREQGLLQILTE----MDGFKVSTSQVLVIGATN----RLDILDPALLRKGRFDKIVRV 475 (845)
Q Consensus 404 IDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~e----mdg~~~~~~~ViVIaaTN----~pd~LDpALlRpgRFdr~I~v 475 (845)
|||||.++.+.++.+..-+..-.|+.|+.+++- ......+..+|++||+.- .|..|=|.|. |||..++.+
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L 330 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVEL 330 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEEC
Confidence 999999997653222122233356667666543 111123456799999873 4666778886 499999999
Q ss_pred CCCCHhHHHHHH
Q 043051 476 GLPSKDGRFAIL 487 (845)
Q Consensus 476 ~~Pd~eeR~eIL 487 (845)
..++.++...||
T Consensus 331 ~~L~~edL~rIL 342 (441)
T TIGR00390 331 QALTTDDFERIL 342 (441)
T ss_pred CCCCHHHHHHHh
Confidence 999999999998
No 125
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.54 E-value=1.7e-13 Score=153.88 Aligned_cols=180 Identities=28% Similarity=0.378 Sum_probs=126.1
Q ss_pred cccccHHHHHHHHHHHHH-hhCcHHHhhcC-CCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH-hhhh-h
Q 043051 307 DFAGQEYIKRELQEIVRI-LKNDEEFQNKG-IYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE-MFVG-V 382 (845)
Q Consensus 307 dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g-~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~-~~vG-~ 382 (845)
.|+|++++|+.+...+.. .+......... -..|+++||+||||||||++|+++|+.++.||+.+++++|.+ .|+| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 489999999999776632 11110000011 113689999999999999999999999999999999998886 4777 3
Q ss_pred hhhhHHHHHHHHH-------------------------------------------------------------------
Q 043051 383 AASRVKDLFASAR------------------------------------------------------------------- 395 (845)
Q Consensus 383 ~~~~vr~lF~~A~------------------------------------------------------------------- 395 (845)
.+..++++|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 3566666666661
Q ss_pred ---------------------------------------------------------------------h--cCCcEEEE
Q 043051 396 ---------------------------------------------------------------------S--FAPSIIFI 404 (845)
Q Consensus 396 ---------------------------------------------------------------------~--~aP~ILfI 404 (845)
. ..-+||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 13469999
Q ss_pred cccchhccCCCCCCCCCCchHHHHHHHHHHHh----hcCCcccCCcEEEEEEc----CCCCCCChhhhccCcccEEEEeC
Q 043051 405 DEIDAIGSKRGGPDIGGGGAEREQGLLQILTE----MDGFKVSTSQVLVIGAT----NRLDILDPALLRKGRFDKIVRVG 476 (845)
Q Consensus 405 DEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~e----mdg~~~~~~~ViVIaaT----N~pd~LDpALlRpgRFdr~I~v~ 476 (845)
||||.++.+.++.+..-+..-.|+.|+.+++- ..-...+..+|++||+. ..|..|-|.|.- ||..++.+.
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~ 333 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVELD 333 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECC
Confidence 99999997753222122223356666666543 11112345679999987 346667788875 999999999
Q ss_pred CCCHhHHHHHHH
Q 043051 477 LPSKDGRFAILK 488 (845)
Q Consensus 477 ~Pd~eeR~eIL~ 488 (845)
.++.++...||.
T Consensus 334 ~L~~~dL~~ILt 345 (443)
T PRK05201 334 ALTEEDFVRILT 345 (443)
T ss_pred CCCHHHHHHHhc
Confidence 999999999983
No 126
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.54 E-value=4.1e-13 Score=145.38 Aligned_cols=129 Identities=22% Similarity=0.283 Sum_probs=101.7
Q ss_pred CcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCC------------CCCCChhhhcc
Q 043051 399 PSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNR------------LDILDPALLRK 466 (845)
Q Consensus 399 P~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~------------pd~LDpALlRp 466 (845)
|+||||||+|.| +-+....|++.++. .-. -++|.|||+ |.-++..|+.
T Consensus 292 pGVLFIDEvHmL------------DIE~FsFlnrAlEs------e~a-PIii~AtNRG~~kiRGTd~~sPhGIP~DlLD- 351 (450)
T COG1224 292 PGVLFIDEVHML------------DIECFSFLNRALES------ELA-PIIILATNRGMTKIRGTDIESPHGIPLDLLD- 351 (450)
T ss_pred cceEEEechhhh------------hHHHHHHHHHHhhc------ccC-cEEEEEcCCceeeecccCCcCCCCCCHhhhh-
Confidence 889999999988 44566666666654 122 366778886 6668888887
Q ss_pred CcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Q 043051 467 GRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELL 546 (845)
Q Consensus 467 gRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~ 546 (845)
|. .+|...+++.++.++|++..++...+.. ++..++.|+..-..-|-+-..+|+.-|...|.+++...|..+|++
T Consensus 352 -Rl-lII~t~py~~~EireIi~iRa~ee~i~l---~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe 426 (450)
T COG1224 352 -RL-LIISTRPYSREEIREIIRIRAKEEDIEL---SDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVE 426 (450)
T ss_pred -he-eEEecCCCCHHHHHHHHHHhhhhhcccc---CHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHH
Confidence 54 4778889999999999999998877765 466788888877766777788888899999999999999999999
Q ss_pred HHHHhc
Q 043051 547 EALKRQ 552 (845)
Q Consensus 547 ~Al~r~ 552 (845)
+|-.-.
T Consensus 427 ~a~~lF 432 (450)
T COG1224 427 RAKELF 432 (450)
T ss_pred HHHHHH
Confidence 987644
No 127
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=2.6e-13 Score=161.17 Aligned_cols=215 Identities=19% Similarity=0.202 Sum_probs=147.7
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEE---ee---
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFA---AN--- 371 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~---vs--- 371 (845)
+++++.+|+||+|++.+++.|...+.. .+.+..+||+||||||||++|+++|+.+++..-. ..
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~-----------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAE-----------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 458899999999999999988776642 1246678999999999999999999988642210 00
Q ss_pred ch---hHH--------Hh--hhhhhhhhHHHHHHHHHh----cCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHH
Q 043051 372 GT---DFV--------EM--FVGVAASRVKDLFASARS----FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQIL 434 (845)
Q Consensus 372 ~s---df~--------~~--~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL 434 (845)
|. .+. +. ....+...++++.+.+.. ....||+|||+|.|. .+..+.|+..|
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~------------~~a~naLLk~L 144 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS------------TAAFNALLKTL 144 (585)
T ss_pred CHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC------------HHHHHHHHHHH
Confidence 11 000 00 001223456666554432 124599999999982 23344555554
Q ss_pred HhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHcc
Q 043051 435 TEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTE 514 (845)
Q Consensus 435 ~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~ 514 (845)
++ ....+++|.+|+..+.+.+.+.+ |. ..+.|..++..+...++...+...++.. ++..+..++..+.
T Consensus 145 Ee------pp~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i---~~eal~~La~~s~ 212 (585)
T PRK14950 145 EE------PPPHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINL---EPGALEAIARAAT 212 (585)
T ss_pred hc------CCCCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcC
Confidence 44 23346777777778888888988 44 4689999999999999988887766543 3456788888887
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 515 DFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 515 GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
| +.+++.+.++..+.+ +...|+.+++.+.+...
T Consensus 213 G-dlr~al~~LekL~~y----~~~~It~e~V~~ll~~s 245 (585)
T PRK14950 213 G-SMRDAENLLQQLATT----YGGEISLSQVQSLLGIS 245 (585)
T ss_pred C-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHhcCC
Confidence 7 777777777765443 23569999998877654
No 128
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.53 E-value=6.8e-13 Score=142.63 Aligned_cols=189 Identities=23% Similarity=0.270 Sum_probs=120.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechh------HHHhhhhhhhhhHH--------------------HHHHH
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTD------FVEMFVGVAASRVK--------------------DLFAS 393 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sd------f~~~~vG~~~~~vr--------------------~lF~~ 393 (845)
.++||+||||||||++|+++|..+|.||+.++|.. ++..+.|.....+. ..+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 47999999999999999999999999999998753 32222221111111 11222
Q ss_pred HHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc----CCc------ccCCcEEEEEEcCCCC-----C
Q 043051 394 ARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD----GFK------VSTSQVLVIGATNRLD-----I 458 (845)
Q Consensus 394 A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd----g~~------~~~~~ViVIaaTN~pd-----~ 458 (845)
|.. .+.+|+|||||.+ +.+.+..|+.+|++-. +.. ....++.||+|+|... .
T Consensus 102 A~~-~g~~lllDEi~r~------------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~ 168 (262)
T TIGR02640 102 AVR-EGFTLVYDEFTRS------------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHE 168 (262)
T ss_pred HHH-cCCEEEEcchhhC------------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceec
Confidence 322 3579999999997 4567788888886511 100 0123478999999763 4
Q ss_pred CChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHc------cCCcHHHHHHHHHHHHHHH
Q 043051 459 LDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELT------EDFTGAELQNILNEAGILT 532 (845)
Q Consensus 459 LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t------~GfSgaDL~~LvneAal~A 532 (845)
++++|++ || ..+.++.|+.++..+|++.++. .. ...-..+-.++..+ ...+ .+.++.-|...+
T Consensus 169 l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~--~~~~~~iv~~~~~~R~~~~~~~~~---~r~~i~~~~~~~ 237 (262)
T TIGR02640 169 TQDALLD--RL-ITIFMDYPDIDTETAILRAKTD---VA--EDSAATIVRLVREFRASGDEITSG---LRASLMIAEVAT 237 (262)
T ss_pred ccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CC--HHHHHHHHHHHHHHHhhCCccCCc---HHHHHHHHHHHH
Confidence 6899999 87 5799999999999999998752 21 00111111111111 1223 444444444444
Q ss_pred HHcCCCccCHHHHHHHHHhc
Q 043051 533 ARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 533 ~r~~~~~It~edl~~Al~r~ 552 (845)
.......++.+||.+....+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~ 257 (262)
T TIGR02640 238 QQDIPVDVDDEDFVDLCIDI 257 (262)
T ss_pred HcCCCCCCCcHHHHHHHHHH
Confidence 44556788899988877655
No 129
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.9e-13 Score=158.96 Aligned_cols=229 Identities=25% Similarity=0.354 Sum_probs=159.6
Q ss_pred ccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHH---------
Q 043051 306 DDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFV--------- 376 (845)
Q Consensus 306 ~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~--------- 376 (845)
.|=.|.+++|+.+.|.+.-.+... .+. ..-++|+||||+|||.|++.||+.+|.+|+.++-....
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~---~~k---GpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTK---KLK---GPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhc---cCC---CcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 366899999998888776543322 221 23588999999999999999999999999999876443
Q ss_pred HhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc---------CCcccCCcE
Q 043051 377 EMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD---------GFKVSTSQV 447 (845)
Q Consensus 377 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd---------g~~~~~~~V 447 (845)
..|+|.-+.++-.-...|....| +++|||||.++..- .|+ -..+|+.+|+-=. .+..+-++|
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~-----rGD---PaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSF-----RGD---PASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCC-----CCC---hHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 25889899999999999998888 89999999997542 222 2345555554311 122234569
Q ss_pred EEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhh-----cccch--hhhhhHHHHHHH-Hcc--CCc
Q 043051 448 LVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNK-----YFRSE--EEKDVLLQEIAE-LTE--DFT 517 (845)
Q Consensus 448 iVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~-----~l~~~--~~~d~dl~~LA~-~t~--GfS 517 (845)
++|||+|..+.++.+|+. |+. +|.+.-++.++..+|-+.|+=.. ++... ...+..+..|.+ .|. |.-
T Consensus 468 mFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR 544 (782)
T COG0466 468 MFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVR 544 (782)
T ss_pred EEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhh
Confidence 999999999999999999 774 89999999999999999887332 22211 112333444443 222 211
Q ss_pred --HHHHHHHHHHHHHHHHHcCCC---ccCHHHHHHHHHhc
Q 043051 518 --GAELQNILNEAGILTARKDLD---YIGQEELLEALKRQ 552 (845)
Q Consensus 518 --gaDL~~LvneAal~A~r~~~~---~It~edl~~Al~r~ 552 (845)
-+.|..+|+.++..-...... .|+..++.+-+...
T Consensus 545 ~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~~ 584 (782)
T COG0466 545 NLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGVP 584 (782)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhCCc
Confidence 136777777776554443333 36777788777655
No 130
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=3.6e-14 Score=163.84 Aligned_cols=168 Identities=28% Similarity=0.465 Sum_probs=131.8
Q ss_pred ccccccHHHHHHHHHHHHH--hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHH-------
Q 043051 306 DDFAGQEYIKRELQEIVRI--LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFV------- 376 (845)
Q Consensus 306 ~dVvG~de~k~eL~eiv~~--Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~------- 376 (845)
+|=.|++.+|+.+.|++.- |+. -...+-++|+||||+|||.+||+||..+|..|+.++...+.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrg--------s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRG--------SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcc--------cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcc
Confidence 4778999999999887654 332 22356789999999999999999999999999999865433
Q ss_pred --HhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhh------c---CCcccCC
Q 043051 377 --EMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEM------D---GFKVSTS 445 (845)
Q Consensus 377 --~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~em------d---g~~~~~~ 445 (845)
..|+|..+.++-+.+....-..| +++|||||.+|+.- .| .-..+|+.+|+-- | ....+-.
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~-----qG---DPasALLElLDPEQNanFlDHYLdVp~DLS 553 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGH-----QG---DPASALLELLDPEQNANFLDHYLDVPVDLS 553 (906)
T ss_pred cceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCC-----CC---ChHHHHHHhcChhhccchhhhccccccchh
Confidence 25899999999999999988888 89999999997321 12 2234566665431 1 1122345
Q ss_pred cEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhh
Q 043051 446 QVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARN 493 (845)
Q Consensus 446 ~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~ 493 (845)
+|++|||.|..+.|+++|+. |+. .|.++-+..++...|-+.|+-.
T Consensus 554 kVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 554 KVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred heEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhhh
Confidence 79999999999999999998 775 8999999999999999988743
No 131
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=3.3e-13 Score=160.47 Aligned_cols=211 Identities=20% Similarity=0.247 Sum_probs=149.9
Q ss_pred ccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---------
Q 043051 296 SAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVP--------- 366 (845)
Q Consensus 296 ~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~p--------- 366 (845)
+..++++.+|+||+|++.+++.|...+.. .+.|..+|||||+|+|||++|+++|+.+.+.
T Consensus 7 ~~~kyRP~~f~~viGq~~~~~~L~~~i~~-----------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~C 75 (614)
T PRK14971 7 SARKYRPSTFESVVGQEALTTTLKNAIAT-----------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEAC 75 (614)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 44568899999999999999988776642 2357789999999999999999999987642
Q ss_pred ----------------eEEeechhHHHhhhhhhhhhHHHHHHHHHhcC----CcEEEEcccchhccCCCCCCCCCCchHH
Q 043051 367 ----------------FFAANGTDFVEMFVGVAASRVKDLFASARSFA----PSIIFIDEIDAIGSKRGGPDIGGGGAER 426 (845)
Q Consensus 367 ----------------fi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~a----P~ILfIDEIDaL~~~R~~~~~~~~~~e~ 426 (845)
++.+++++ ..+...++.+.+.+.... ..|++|||+|.+ +...
T Consensus 76 g~C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~L------------s~~a 137 (614)
T PRK14971 76 NECESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHML------------SQAA 137 (614)
T ss_pred CcchHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccC------------CHHH
Confidence 22222211 112456777777664321 249999999998 3345
Q ss_pred HHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHH
Q 043051 427 EQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLL 506 (845)
Q Consensus 427 ~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl 506 (845)
.+.|+..|++. +...++|.+|+.+..|-++|+++| ..+.|..++.++....+...+...++.. ....+
T Consensus 138 ~naLLK~LEep------p~~tifIL~tt~~~kIl~tI~SRc---~iv~f~~ls~~ei~~~L~~ia~~egi~i---~~~al 205 (614)
T PRK14971 138 FNAFLKTLEEP------PSYAIFILATTEKHKILPTILSRC---QIFDFNRIQVADIVNHLQYVASKEGITA---EPEAL 205 (614)
T ss_pred HHHHHHHHhCC------CCCeEEEEEeCCchhchHHHHhhh---heeecCCCCHHHHHHHHHHHHHHcCCCC---CHHHH
Confidence 56666666662 344677777777788999999955 5799999999999999998888776653 34567
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 507 QEIAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 507 ~~LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
..|+..+.| +.+++.+++.....++ +.. |+.+++.+.+...
T Consensus 206 ~~La~~s~g-dlr~al~~Lekl~~y~---~~~-It~~~V~~~l~~~ 246 (614)
T PRK14971 206 NVIAQKADG-GMRDALSIFDQVVSFT---GGN-ITYKSVIENLNIL 246 (614)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHHhc---cCC-ccHHHHHHHhCCC
Confidence 888888765 5666666665554443 323 8888877766543
No 132
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.52 E-value=3.4e-13 Score=163.13 Aligned_cols=204 Identities=18% Similarity=0.258 Sum_probs=136.3
Q ss_pred cccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH-----hhhh
Q 043051 307 DFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE-----MFVG 381 (845)
Q Consensus 307 dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~-----~~vG 381 (845)
.|+|++++++.|.+.+...+..-. ...+|..++||+||||||||++|+++|..++.+|+.++++++.+ .+.|
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~---~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG---HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc---CCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 489999999999988865432100 00122346999999999999999999999999999999998754 3333
Q ss_pred hhhhh----HHHHHHH-HHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhh-----cCCcccCCcEEEEE
Q 043051 382 VAASR----VKDLFAS-ARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEM-----DGFKVSTSQVLVIG 451 (845)
Q Consensus 382 ~~~~~----vr~lF~~-A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~em-----dg~~~~~~~ViVIa 451 (845)
..... ....+.. .+....|||||||||.+ +.+.++.|+++|++- .|...+..++++|+
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka------------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~ 603 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA------------HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVM 603 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhh------------hHHHHHHHHHHHhcCeeecCCCceecCCCcEEEE
Confidence 22111 1123333 34445689999999998 456778888888752 12222334688999
Q ss_pred EcCCC-------------------------CCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhh-------cccch
Q 043051 452 ATNRL-------------------------DILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNK-------YFRSE 499 (845)
Q Consensus 452 aTN~p-------------------------d~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~-------~l~~~ 499 (845)
|||.- ..+.|.++. |+|.+|.|++.+.++..+|+...+... ++...
T Consensus 604 TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~ 681 (758)
T PRK11034 604 TTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLE 681 (758)
T ss_pred eCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCce
Confidence 99932 125678877 999999999999999999998766432 22211
Q ss_pred hhhhhHHHHHHHHc--cCCcHHHHHHHHHHH
Q 043051 500 EEKDVLLQEIAELT--EDFTGAELQNILNEA 528 (845)
Q Consensus 500 ~~~d~dl~~LA~~t--~GfSgaDL~~LvneA 528 (845)
..+..++.|+... +.+..+.|+.++..-
T Consensus 682 -~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~ 711 (758)
T PRK11034 682 -VSQEARDWLAEKGYDRAMGARPMARVIQDN 711 (758)
T ss_pred -ECHHHHHHHHHhCCCCCCCCchHHHHHHHH
Confidence 1344456666532 334455666665543
No 133
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.52 E-value=3.1e-13 Score=164.51 Aligned_cols=227 Identities=22% Similarity=0.307 Sum_probs=150.3
Q ss_pred cccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH---------
Q 043051 307 DFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE--------- 377 (845)
Q Consensus 307 dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~--------- 377 (845)
|..|++.+|+.+.+.+....... ......++|+||||||||++++.+|+.++.+|+.++.+...+
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~------~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVN------KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcc------cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchh
Confidence 58999999999988777543211 112346999999999999999999999999999888665322
Q ss_pred hhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhh------cC---CcccCCcEE
Q 043051 378 MFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEM------DG---FKVSTSQVL 448 (845)
Q Consensus 378 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~em------dg---~~~~~~~Vi 448 (845)
.|.|....++...+..+....| ||||||||.++.... + .....|+++++.- |. +..+-++++
T Consensus 397 ~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~-----g---~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 397 TYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMR-----G---DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred ccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccC-----C---CHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 3556556666666666654455 899999999965321 1 1345677766531 11 112336699
Q ss_pred EEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhc-----ccc--hhhhhhHHHHHHHH-ccCCcHHH
Q 043051 449 VIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKY-----FRS--EEEKDVLLQEIAEL-TEDFTGAE 520 (845)
Q Consensus 449 VIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~-----l~~--~~~~d~dl~~LA~~-t~GfSgaD 520 (845)
+|||+|.. .|+++|++ ||. .|.+..++.++..+|.+.++..+. +.. -...+..+..+++. +..+..+.
T Consensus 468 ~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~ 543 (784)
T PRK10787 468 FVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRS 543 (784)
T ss_pred EEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcH
Confidence 99999987 59999999 885 799999999999999998884221 110 01234445666643 33444455
Q ss_pred HHHHHHHHHHH----HHHcCC---CccCHHHHHHHHHhc
Q 043051 521 LQNILNEAGIL----TARKDL---DYIGQEELLEALKRQ 552 (845)
Q Consensus 521 L~~LvneAal~----A~r~~~---~~It~edl~~Al~r~ 552 (845)
|+.++...+.. ....+. -.|+.+++.+.+...
T Consensus 544 LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg~~ 582 (784)
T PRK10787 544 LEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQ 582 (784)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhCCC
Confidence 55554443322 222221 257888887776654
No 134
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.52 E-value=1.6e-13 Score=151.82 Aligned_cols=225 Identities=23% Similarity=0.351 Sum_probs=139.8
Q ss_pred CCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-------CCCeEEe--e
Q 043051 301 TGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA-------GVPFFAA--N 371 (845)
Q Consensus 301 ~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el-------g~pfi~v--s 371 (845)
.+..|++|+|++++++.|.-.. + ++. ..++||+||||||||++||++|+-+ ++|+-.. .
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~--~-~~~---------~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTA--I-DPG---------IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHH--h-ccC---------CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 4678999999999998776422 1 010 1479999999999999999999987 3322111 1
Q ss_pred c-hh---------------HHHhhhhhhhhhHHH-------------HHHHH--HhcCCcEEEEcccchhccCCCCCCCC
Q 043051 372 G-TD---------------FVEMFVGVAASRVKD-------------LFASA--RSFAPSIIFIDEIDAIGSKRGGPDIG 420 (845)
Q Consensus 372 ~-sd---------------f~~~~vG~~~~~vr~-------------lF~~A--~~~aP~ILfIDEIDaL~~~R~~~~~~ 420 (845)
+ .+ |+....+.+..++-. .|..- .....++||||||+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl---------- 140 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL---------- 140 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC----------
Confidence 1 00 111111111111111 01100 0112369999999998
Q ss_pred CCchHHHHHHHHHHHhh------cCCc-ccCCcEEEEEEcCCCC-CCChhhhccCcccEEEEeCCCCH-hHHHHHHHHHH
Q 043051 421 GGGAEREQGLLQILTEM------DGFK-VSTSQVLVIGATNRLD-ILDPALLRKGRFDKIVRVGLPSK-DGRFAILKVHA 491 (845)
Q Consensus 421 ~~~~e~~~~L~qLL~em------dg~~-~~~~~ViVIaaTN~pd-~LDpALlRpgRFdr~I~v~~Pd~-eeR~eIL~~~l 491 (845)
+...++.|.+.+.+- +|.. ..+.++++|+++|..+ .++++|+. ||...+.++.|.. ++|.+|++...
T Consensus 141 --~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 141 --EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred --CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhh
Confidence 456677788877652 2221 1234689999999755 58999999 9999999998866 89999998753
Q ss_pred hhhc--ccc------------h------------hhhhhHHH---HHHHHccCCc-HHHHHHHHHHHHHHHHHcCCCccC
Q 043051 492 RNKY--FRS------------E------------EEKDVLLQ---EIAELTEDFT-GAELQNILNEAGILTARKDLDYIG 541 (845)
Q Consensus 492 ~~~~--l~~------------~------------~~~d~dl~---~LA~~t~GfS-gaDL~~LvneAal~A~r~~~~~It 541 (845)
.... ... . ..++...+ .++..+.--+ -+++. +++.|...|+..+++.|+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~~V~ 295 (334)
T PRK13407 217 AYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAEAVG 295 (334)
T ss_pred cccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCCeeC
Confidence 2110 000 0 00122222 3333333113 34555 999999999999999999
Q ss_pred HHHHHHHHHhc
Q 043051 542 QEELLEALKRQ 552 (845)
Q Consensus 542 ~edl~~Al~r~ 552 (845)
.+|+..+..-+
T Consensus 296 ~~Di~~~~~~v 306 (334)
T PRK13407 296 RSHLRSVATMA 306 (334)
T ss_pred HHHHHHHHHHh
Confidence 99998877544
No 135
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.50 E-value=2.6e-12 Score=144.44 Aligned_cols=223 Identities=21% Similarity=0.286 Sum_probs=163.5
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeEEeechh
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA-----GVPFFAANGTD 374 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el-----g~pfi~vs~sd 374 (845)
.+..||++++.-+.-.....-.......|.. .-..++||||.|.|||+|++|+++++ +..+++++..+
T Consensus 81 ~~~ytFdnFv~g~~N~~A~aa~~~va~~~g~-------~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~ 153 (408)
T COG0593 81 NPKYTFDNFVVGPSNRLAYAAAKAVAENPGG-------AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSED 153 (408)
T ss_pred CCCCchhheeeCCchHHHHHHHHHHHhccCC-------cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHH
Confidence 5788999998766655555444444444331 33579999999999999999998876 34689999999
Q ss_pred HHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcC
Q 043051 375 FVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATN 454 (845)
Q Consensus 375 f~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN 454 (845)
|...++......-.+-|..-. +-.+++||+|+.+.++. ..+..+..++..+- ..++-+|+++..
T Consensus 154 f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~----------~~qeefFh~FN~l~----~~~kqIvltsdr 217 (408)
T COG0593 154 FTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKE----------RTQEEFFHTFNALL----ENGKQIVLTSDR 217 (408)
T ss_pred HHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCCh----------hHHHHHHHHHHHHH----hcCCEEEEEcCC
Confidence 988776654333333344433 33589999999996542 22444444444431 124467777767
Q ss_pred CCCCC---ChhhhccCccc--EEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHH
Q 043051 455 RLDIL---DPALLRKGRFD--KIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAG 529 (845)
Q Consensus 455 ~pd~L---DpALlRpgRFd--r~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAa 529 (845)
.|..+ .|.|.+ ||. ..+.+.+|+.+.|..||+..+...++.. ++..+..+|..... +.++|..+++...
T Consensus 218 ~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i---~~ev~~~la~~~~~-nvReLegaL~~l~ 291 (408)
T COG0593 218 PPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEI---PDEVLEFLAKRLDR-NVRELEGALNRLD 291 (408)
T ss_pred CchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHhhc-cHHHHHHHHHHHH
Confidence 77765 699999 765 4788999999999999999888877775 56678888888776 8899999999888
Q ss_pred HHHHHcCCCccCHHHHHHHHHhc
Q 043051 530 ILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 530 l~A~r~~~~~It~edl~~Al~r~ 552 (845)
..|...+. .||.+.+.+++...
T Consensus 292 ~~a~~~~~-~iTi~~v~e~L~~~ 313 (408)
T COG0593 292 AFALFTKR-AITIDLVKEILKDL 313 (408)
T ss_pred HHHHhcCc-cCcHHHHHHHHHHh
Confidence 88777664 79999999999887
No 136
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.50 E-value=1.1e-12 Score=156.26 Aligned_cols=222 Identities=24% Similarity=0.324 Sum_probs=146.1
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeE
Q 043051 299 ETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA----------GVPFF 368 (845)
Q Consensus 299 ~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el----------g~pfi 368 (845)
..++.+|++++|++.+.+.+...+ .. ..|.+++|+||||||||++|+++++.. +.+|+
T Consensus 147 ~~rp~~~~~iiGqs~~~~~l~~~i---a~---------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv 214 (615)
T TIGR02903 147 LLRPRAFSEIVGQERAIKALLAKV---AS---------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFV 214 (615)
T ss_pred hcCcCcHHhceeCcHHHHHHHHHH---hc---------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeE
Confidence 356889999999999888764433 21 125679999999999999999998755 46899
Q ss_pred EeechhHH-------Hhhhhhhhh----hHHHHHHH----------HHhcCCcEEEEcccchhccCCCCCCCCCCchHHH
Q 043051 369 AANGTDFV-------EMFVGVAAS----RVKDLFAS----------ARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAERE 427 (845)
Q Consensus 369 ~vs~sdf~-------~~~vG~~~~----~vr~lF~~----------A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~ 427 (845)
.++|+.+. ..+.|.... ..+..+.. ......++|||||++.| +...+
T Consensus 215 ~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L------------d~~~Q 282 (615)
T TIGR02903 215 EVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL------------DPLLQ 282 (615)
T ss_pred EEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC------------CHHHH
Confidence 99987642 111121100 00111110 01223579999999998 45667
Q ss_pred HHHHHHHHhhc-----C-C---------------c-ccCCcEEEEEEc-CCCCCCChhhhccCcccEEEEeCCCCHhHHH
Q 043051 428 QGLLQILTEMD-----G-F---------------K-VSTSQVLVIGAT-NRLDILDPALLRKGRFDKIVRVGLPSKDGRF 484 (845)
Q Consensus 428 ~~L~qLL~emd-----g-~---------------~-~~~~~ViVIaaT-N~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~ 484 (845)
..|..++.+-. + + . ....++++|++| +.++.++++|++ ||. .+.+++++.+++.
T Consensus 283 ~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~ 359 (615)
T TIGR02903 283 NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHH
Confidence 77777776511 0 0 0 012336666655 568889999998 776 6789999999999
Q ss_pred HHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHc--------CCCccCHHHHHHHHHhc
Q 043051 485 AILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARK--------DLDYIGQEELLEALKRQ 552 (845)
Q Consensus 485 eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~--------~~~~It~edl~~Al~r~ 552 (845)
+|++..+...+... .+..++.|+..+. .|+...+++..+...+..+ ....|+.+|+.+++...
T Consensus 360 ~Il~~~a~~~~v~l---s~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 360 LIVLNAAEKINVHL---AAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred HHHHHHHHHcCCCC---CHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence 99999887654432 3456677777653 5666666665554333211 22369999999999876
No 137
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.49 E-value=5.5e-13 Score=148.16 Aligned_cols=227 Identities=19% Similarity=0.245 Sum_probs=146.9
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-------CCCeEEee-
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA-------GVPFFAAN- 371 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el-------g~pfi~vs- 371 (845)
.....|++|+|++++|..|.... .+|. ..|+||.||+|||||++||++++.+ +.||..-.
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~---~~p~---------~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNV---IDPK---------IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhc---cCCC---------CCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 44668999999999999775433 2232 3589999999999999999997765 23443100
Q ss_pred -----chh-------------------HHHhhhhhhhhhH------HHHHHHHH---------hcCCcEEEEcccchhcc
Q 043051 372 -----GTD-------------------FVEMFVGVAASRV------KDLFASAR---------SFAPSIIFIDEIDAIGS 412 (845)
Q Consensus 372 -----~sd-------------------f~~~~vG~~~~~v------r~lF~~A~---------~~aP~ILfIDEIDaL~~ 412 (845)
+++ |++...|.+.+++ ...|.... ....++||||||+.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL-- 156 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL-- 156 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC--
Confidence 000 0111112222221 11122111 112479999999999
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHhh------cCCcc-cCCcEEEEEEcCCCC-CCChhhhccCcccEEEEeCCCC-HhHH
Q 043051 413 KRGGPDIGGGGAEREQGLLQILTEM------DGFKV-STSQVLVIGATNRLD-ILDPALLRKGRFDKIVRVGLPS-KDGR 483 (845)
Q Consensus 413 ~R~~~~~~~~~~e~~~~L~qLL~em------dg~~~-~~~~ViVIaaTN~pd-~LDpALlRpgRFdr~I~v~~Pd-~eeR 483 (845)
+...+..|++.+.+- +|... .+.++++|++.|..+ .+.++|+. ||..++.+..|+ .+.+
T Consensus 157 ----------~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e 224 (350)
T CHL00081 157 ----------DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELR 224 (350)
T ss_pred ----------CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHH
Confidence 456677777777651 23211 234689999888766 69999999 999999999997 5999
Q ss_pred HHHHHHHHhhh--ccc------------ch------------hhhhhH---HHHHHHHccCCcHHHHHHHHHHHHHHHHH
Q 043051 484 FAILKVHARNK--YFR------------SE------------EEKDVL---LQEIAELTEDFTGAELQNILNEAGILTAR 534 (845)
Q Consensus 484 ~eIL~~~l~~~--~l~------------~~------------~~~d~d---l~~LA~~t~GfSgaDL~~LvneAal~A~r 534 (845)
.+|++...... ... .. ..++.. +..++..+.--+.+--..+++-|..+|+-
T Consensus 225 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal 304 (350)
T CHL00081 225 VKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAF 304 (350)
T ss_pred HHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHH
Confidence 99998753211 000 00 001222 23333344434677777888889999999
Q ss_pred cCCCccCHHHHHHHHHhc
Q 043051 535 KDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 535 ~~~~~It~edl~~Al~r~ 552 (845)
++++.|+.+|+..+..-+
T Consensus 305 ~GR~~V~pdDv~~~a~~v 322 (350)
T CHL00081 305 EGRTEVTPKDIFKVITLC 322 (350)
T ss_pred cCCCCCCHHHHHHHHHHH
Confidence 999999999999987755
No 138
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.49 E-value=7.2e-13 Score=161.23 Aligned_cols=203 Identities=23% Similarity=0.307 Sum_probs=139.8
Q ss_pred ccccccHHHHHHHHHHHHHhhCcHHHhhcCCC---CCc-eEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHh---
Q 043051 306 DDFAGQEYIKRELQEIVRILKNDEEFQNKGIY---CPK-GVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM--- 378 (845)
Q Consensus 306 ~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~---~Pr-gVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~--- 378 (845)
+.|+|++++++.+.+.+...+ .|.. .|. .+||+||||||||++|+++|..++.+++.++++++.+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~-------~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~ 526 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSR-------AGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV 526 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHh-------cCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence 458899999998888776532 2221 244 47899999999999999999999999999999988652
Q ss_pred --hhhhh-----hhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhh-----cCCcccCCc
Q 043051 379 --FVGVA-----ASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEM-----DGFKVSTSQ 446 (845)
Q Consensus 379 --~vG~~-----~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~em-----dg~~~~~~~ 446 (845)
..|.. ......+.+..+.+..+||+|||||.+ +....+.|++++++- .|...+..+
T Consensus 527 ~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka------------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~ 594 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA------------HPDIYNILLQVMDYATLTDNNGRKADFRN 594 (731)
T ss_pred HHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc------------CHHHHHHHHHhhccCeeecCCCcccCCCC
Confidence 22221 112223444445556689999999988 456778888888752 111222345
Q ss_pred EEEEEEcCCCC-------------------------CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccc---
Q 043051 447 VLVIGATNRLD-------------------------ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRS--- 498 (845)
Q Consensus 447 ViVIaaTN~pd-------------------------~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~--- 498 (845)
+++|+|||... .+.|.++. |||.+|.|.+.+.++..+|++..+.......
T Consensus 595 ~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~ 672 (731)
T TIGR02639 595 VILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEK 672 (731)
T ss_pred CEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 88999998631 14677776 9999999999999999999998876421110
Q ss_pred ---hhhhhhHHHHHHHH--ccCCcHHHHHHHHHHHH
Q 043051 499 ---EEEKDVLLQEIAEL--TEDFTGAELQNILNEAG 529 (845)
Q Consensus 499 ---~~~~d~dl~~LA~~--t~GfSgaDL~~LvneAa 529 (845)
-...+..++.|+.. .+.+..+.|+.+++.-.
T Consensus 673 ~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~ 708 (731)
T TIGR02639 673 NIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEI 708 (731)
T ss_pred CCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHh
Confidence 01134556677764 44566677777776543
No 139
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.49 E-value=8.4e-13 Score=149.62 Aligned_cols=223 Identities=29% Similarity=0.379 Sum_probs=139.3
Q ss_pred cccccHHHHHHHHHHHHH----hhCc-HHHhhcCCC-CCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH-hh
Q 043051 307 DFAGQEYIKRELQEIVRI----LKND-EEFQNKGIY-CPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE-MF 379 (845)
Q Consensus 307 dVvG~de~k~eL~eiv~~----Lk~p-~~~~~~g~~-~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~-~~ 379 (845)
-|+|++++++.+...+.. ++.. ......+.. .+.++||+||||||||++|+++|..++.||..++++.+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 379999999999776622 2110 000000111 2368999999999999999999999999999999887653 46
Q ss_pred hhhh-hhhHHHHHHHH----HhcCCcEEEEcccchhccCCCCCCCC--CCchHHHHHHHHHHHhh-------cCCcccCC
Q 043051 380 VGVA-ASRVKDLFASA----RSFAPSIIFIDEIDAIGSKRGGPDIG--GGGAEREQGLLQILTEM-------DGFKVSTS 445 (845)
Q Consensus 380 vG~~-~~~vr~lF~~A----~~~aP~ILfIDEIDaL~~~R~~~~~~--~~~~e~~~~L~qLL~em-------dg~~~~~~ 445 (845)
+|.. ...+..++..+ ....++||||||||.+.+++...+.. ......++.|+++|+.. .|-..+..
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 6654 23333433322 23467899999999998764322211 12235778888888421 01111223
Q ss_pred cEEEEEEcCCCC--------------------------------------------------CCChhhhccCcccEEEEe
Q 043051 446 QVLVIGATNRLD--------------------------------------------------ILDPALLRKGRFDKIVRV 475 (845)
Q Consensus 446 ~ViVIaaTN~pd--------------------------------------------------~LDpALlRpgRFdr~I~v 475 (845)
+.++|.|+|-.. .+.|+|+ ||+|.++.|
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEeec
Confidence 467777777510 0234554 599999999
Q ss_pred CCCCHhHHHHHHHHH----Hhhh-------cccchhhhhhHHHHHHHH--ccCCcHHHHHHHHHHHHHHH
Q 043051 476 GLPSKDGRFAILKVH----ARNK-------YFRSEEEKDVLLQEIAEL--TEDFTGAELQNILNEAGILT 532 (845)
Q Consensus 476 ~~Pd~eeR~eIL~~~----l~~~-------~l~~~~~~d~dl~~LA~~--t~GfSgaDL~~LvneAal~A 532 (845)
.+.+.++..+|+... ++.. ++.. ...+..++.||+. ...+..+.|+.+++...+-+
T Consensus 316 ~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L-~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~ 384 (413)
T TIGR00382 316 EKLDEEALIAILTKPKNALVKQYQALFKMDNVEL-DFEEEALKAIAKKALERKTGARGLRSIVEGLLLDV 384 (413)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEE-EECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHH
Confidence 999999999998753 2211 1111 1235567778775 34566678888777665443
No 140
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.47 E-value=1.3e-12 Score=144.98 Aligned_cols=223 Identities=20% Similarity=0.271 Sum_probs=143.1
Q ss_pred CcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-------CCCeE--------
Q 043051 304 TFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA-------GVPFF-------- 368 (845)
Q Consensus 304 tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el-------g~pfi-------- 368 (845)
.|+.|+|++++|..|.-.+ + +|. ..+++|.|+||||||++++++++-+ +.|+-
T Consensus 2 pf~~ivgq~~~~~al~~~~--~-~~~---------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNV--I-DPK---------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHh--c-CCC---------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 4899999999998764322 1 221 3479999999999999999999876 33332
Q ss_pred -Eeechh----------------HHHhhhhhhhhhHHHHHHHHH---------------hcCCcEEEEcccchhccCCCC
Q 043051 369 -AANGTD----------------FVEMFVGVAASRVKDLFASAR---------------SFAPSIIFIDEIDAIGSKRGG 416 (845)
Q Consensus 369 -~vs~sd----------------f~~~~vG~~~~~vr~lF~~A~---------------~~aP~ILfIDEIDaL~~~R~~ 416 (845)
..+|.. |.++..|.+..++-.-..... +...++||||||+.+
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L------ 143 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLL------ 143 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhC------
Confidence 011110 122222222222221111110 112479999999998
Q ss_pred CCCCCCchHHHHHHHHHHHhh------cCCcc-cCCcEEEEEEcCCCC-CCChhhhccCcccEEEEeCCCCH-hHHHHHH
Q 043051 417 PDIGGGGAEREQGLLQILTEM------DGFKV-STSQVLVIGATNRLD-ILDPALLRKGRFDKIVRVGLPSK-DGRFAIL 487 (845)
Q Consensus 417 ~~~~~~~~e~~~~L~qLL~em------dg~~~-~~~~ViVIaaTN~pd-~LDpALlRpgRFdr~I~v~~Pd~-eeR~eIL 487 (845)
+...+..|++.+.+- +|... .+.++++|+++|..+ .+.++|+. ||..++.++.|+. ++|.+|+
T Consensus 144 ------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL 215 (337)
T TIGR02030 144 ------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIV 215 (337)
T ss_pred ------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHH
Confidence 456777788877651 22211 234689999998766 68999999 9999999999865 8899999
Q ss_pred HHHHhhh----c----cc------------------chhhhhhH---HHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCC
Q 043051 488 KVHARNK----Y----FR------------------SEEEKDVL---LQEIAELTEDFTGAELQNILNEAGILTARKDLD 538 (845)
Q Consensus 488 ~~~l~~~----~----l~------------------~~~~~d~d---l~~LA~~t~GfSgaDL~~LvneAal~A~r~~~~ 538 (845)
+...... . +. .-..++.. +..++..+..-+.+.-..+++-|..+|+.++++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~ 295 (337)
T TIGR02030 216 ERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRT 295 (337)
T ss_pred HhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCC
Confidence 8743210 0 00 00001222 333334444336677778889999999999999
Q ss_pred ccCHHHHHHHHHhc
Q 043051 539 YIGQEELLEALKRQ 552 (845)
Q Consensus 539 ~It~edl~~Al~r~ 552 (845)
.|+.+|+..+..-+
T Consensus 296 ~V~~dDv~~~a~~v 309 (337)
T TIGR02030 296 EVTVDDIRRVAVLA 309 (337)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999887655
No 141
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.46 E-value=4.4e-12 Score=133.40 Aligned_cols=198 Identities=23% Similarity=0.311 Sum_probs=138.7
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHH
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFV 376 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~ 376 (845)
..++.+++++|.+..|+.|.+-...+- ...+..++||||++|||||+++||+..+. |..++.++..++.
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl--------~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFL--------QGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHH--------cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 568999999999999998876443321 22357899999999999999999998866 7889999887764
Q ss_pred HhhhhhhhhhHHHHHHHHHh-cCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCC
Q 043051 377 EMFVGVAASRVKDLFASARS-FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNR 455 (845)
Q Consensus 377 ~~~vG~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~ 455 (845)
. +..+++..+. ..+-|||+|++. + ...+.....|-.+|+- |+...+.+|++.||+|+
T Consensus 93 ~---------l~~l~~~l~~~~~kFIlf~DDLs-F----------e~~d~~yk~LKs~LeG--gle~~P~NvliyATSNR 150 (249)
T PF05673_consen 93 D---------LPELLDLLRDRPYKFILFCDDLS-F----------EEGDTEYKALKSVLEG--GLEARPDNVLIYATSNR 150 (249)
T ss_pred c---------HHHHHHHHhcCCCCEEEEecCCC-C----------CCCcHHHHHHHHHhcC--ccccCCCcEEEEEecch
Confidence 3 4455555543 245799999853 2 1122333445555432 34556778999999998
Q ss_pred CCCCChh---------------------hhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchh-hhhhHHHHHHHHc
Q 043051 456 LDILDPA---------------------LLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEE-EKDVLLQEIAELT 513 (845)
Q Consensus 456 pd~LDpA---------------------LlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~-~~d~dl~~LA~~t 513 (845)
-..+... +.=..||...|.|..|+.++..+|++.++...++.... .-.......|...
T Consensus 151 RHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~r 230 (249)
T PF05673_consen 151 RHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRR 230 (249)
T ss_pred hhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHc
Confidence 5544221 21124999999999999999999999999887776531 2223344556666
Q ss_pred cCCcHHHHHHHHHH
Q 043051 514 EDFTGAELQNILNE 527 (845)
Q Consensus 514 ~GfSgaDL~~Lvne 527 (845)
.|.||+-..+.++.
T Consensus 231 g~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 231 GGRSGRTARQFIDD 244 (249)
T ss_pred CCCCHHHHHHHHHH
Confidence 77888877766653
No 142
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.45 E-value=3e-13 Score=153.92 Aligned_cols=221 Identities=26% Similarity=0.345 Sum_probs=150.7
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHH
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFV 376 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~ 376 (845)
....+|++|+|......++.+.+... ++.+-.|||.|.+||||.++|++|-+.+ +.||+.+||..+-
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr~----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKRI----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHhh----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 45679999999998888877776543 3345689999999999999999997665 6899999998654
Q ss_pred Hh-------------hhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHh-----hc
Q 043051 377 EM-------------FVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTE-----MD 438 (845)
Q Consensus 377 ~~-------------~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~e-----md 438 (845)
+. |.|....--..+|+.|.. +.||+|||..+ +...|..|+.+|++ +.
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgem------------pl~LQaKLLRVLQEkei~rvG 373 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEM------------PLPLQAKLLRVLQEKEIERVG 373 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccC------------CHHHHHHHHHHHhhceEEecC
Confidence 32 223222224567777754 89999999988 56789999999998 33
Q ss_pred CCcccCCcEEEEEEcCCCCCCChhhhccCcccE-------EEEeCCCCHhHHHHHHHHHHhh--------hcccchhhhh
Q 043051 439 GFKVSTSQVLVIGATNRLDILDPALLRKGRFDK-------IVRVGLPSKDGRFAILKVHARN--------KYFRSEEEKD 503 (845)
Q Consensus 439 g~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr-------~I~v~~Pd~eeR~eIL~~~l~~--------~~l~~~~~~d 503 (845)
+-...+-.|.||||||+.- ......|+|.. ++.+..|+..+|.+.+..++.. .+-......+
T Consensus 374 ~t~~~~vDVRIIAATN~nL---~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~ 450 (560)
T COG3829 374 GTKPIPVDVRIIAATNRNL---EKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSP 450 (560)
T ss_pred CCCceeeEEEEEeccCcCH---HHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCH
Confidence 4334445699999999753 33444566643 7788899999998766543322 1111111123
Q ss_pred hHHHHHHHHc-cCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHH-HHHHh
Q 043051 504 VLLQEIAELT-EDFTGAELQNILNEAGILTARKDLDYIGQEELL-EALKR 551 (845)
Q Consensus 504 ~dl~~LA~~t-~GfSgaDL~~LvneAal~A~r~~~~~It~edl~-~Al~r 551 (845)
..+..+.+.. +| +-++|+|++..+...+-. ...|+.+|+- .++..
T Consensus 451 ~a~~~L~~y~WPG-NVRELeNviER~v~~~~~--~~~I~~~~lp~~~l~~ 497 (560)
T COG3829 451 DALALLLRYDWPG-NVRELENVIERAVNLVES--DGLIDADDLPAFALEE 497 (560)
T ss_pred HHHHHHHhCCCCc-hHHHHHHHHHHHHhccCC--cceeehhhcchhhhcc
Confidence 3344444432 23 557999999998764433 3348887776 54443
No 143
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=9.6e-12 Score=139.61 Aligned_cols=218 Identities=20% Similarity=0.271 Sum_probs=151.7
Q ss_pred ccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----eEEeechhHHHhh---
Q 043051 308 FAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVP-----FFAANGTDFVEMF--- 379 (845)
Q Consensus 308 VvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~p-----fi~vs~sdf~~~~--- 379 (845)
+.+.++..+.+..++...-. ...|.++++|||||||||.+++.+++++.-+ ++++||....+.+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~--------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~ 90 (366)
T COG1474 19 LPHREEEINQLASFLAPALR--------GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVL 90 (366)
T ss_pred ccccHHHHHHHHHHHHHHhc--------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHH
Confidence 88889888887776544221 2236679999999999999999999988443 8999997544321
Q ss_pred ------------hhhhhhhHHH-HHHHHHh-cCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCC
Q 043051 380 ------------VGVAASRVKD-LFASARS-FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTS 445 (845)
Q Consensus 380 ------------vG~~~~~vr~-lF~~A~~-~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~ 445 (845)
.|.....+-. +++.... ...-||++||+|.|..+.+ ..|..|+...+.. ..
T Consensus 91 ~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~------------~~LY~L~r~~~~~---~~ 155 (366)
T COG1474 91 SKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG------------EVLYSLLRAPGEN---KV 155 (366)
T ss_pred HHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc------------hHHHHHHhhcccc---ce
Confidence 1222222222 2222222 3456889999999965421 5677776664433 45
Q ss_pred cEEEEEEcCCCC---CCChhhhccCccc-EEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHH---HccCCcH
Q 043051 446 QVLVIGATNRLD---ILDPALLRKGRFD-KIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAE---LTEDFTG 518 (845)
Q Consensus 446 ~ViVIaaTN~pd---~LDpALlRpgRFd-r~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~---~t~GfSg 518 (845)
+|.+|+.+|..+ .+||.+.+ +|. ..|.|++++.+|..+||+..++.. +......+..++.+|. ...| ..
T Consensus 156 ~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~-~~~~~~~~~vl~lia~~~a~~~G-DA 231 (366)
T COG1474 156 KVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEG-FSAGVIDDDVLKLIAALVAAESG-DA 231 (366)
T ss_pred eEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhh-ccCCCcCccHHHHHHHHHHHcCc-cH
Confidence 689999999864 57999988 543 358999999999999999887642 3322223444555554 3344 55
Q ss_pred HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 519 AELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 519 aDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
+-...+|+.|+..|.+++...++.+++..|.+..
T Consensus 232 R~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 232 RKAIDILRRAGEIAEREGSRKVSEDHVREAQEEI 265 (366)
T ss_pred HHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHh
Confidence 6677899999999999999999999999995555
No 144
>PRK09087 hypothetical protein; Validated
Probab=99.41 E-value=9e-12 Score=131.25 Aligned_cols=203 Identities=18% Similarity=0.208 Sum_probs=136.2
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhh
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMF 379 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~ 379 (845)
.+..+|++++.-+.-...+. .++++. + .....++||||+|+|||+|+++++...++. +++..+|...+
T Consensus 15 ~~~~~~~~Fi~~~~N~~a~~----~l~~~~-----~-~~~~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~~ 82 (226)
T PRK09087 15 DPAYGRDDLLVTESNRAAVS----LVDHWP-----N-WPSPVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSDA 82 (226)
T ss_pred CCCCChhceeecCchHHHHH----HHHhcc-----c-CCCCeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchHH
Confidence 45678999995332222222 232211 1 112359999999999999999999887655 44444443322
Q ss_pred hhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCC-
Q 043051 380 VGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDI- 458 (845)
Q Consensus 380 vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~- 458 (845)
+ ..... .+|+|||+|.+.. . +..|..++..+. ..++.+||+++..|..
T Consensus 83 ~-----------~~~~~---~~l~iDDi~~~~~---------~----~~~lf~l~n~~~----~~g~~ilits~~~p~~~ 131 (226)
T PRK09087 83 A-----------NAAAE---GPVLIEDIDAGGF---------D----ETGLFHLINSVR----QAGTSLLMTSRLWPSSW 131 (226)
T ss_pred H-----------Hhhhc---CeEEEECCCCCCC---------C----HHHHHHHHHHHH----hCCCeEEEECCCChHHh
Confidence 1 11111 4889999998721 1 233555655542 2244677777765553
Q ss_pred --CChhhhccCcc--cEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Q 043051 459 --LDPALLRKGRF--DKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTAR 534 (845)
Q Consensus 459 --LDpALlRpgRF--dr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r 534 (845)
..+.|++ || ..++.+..|+.++|.++++.++...++.. ++..++.|++...| +.+.+..+++.....+..
T Consensus 132 ~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l---~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~ 205 (226)
T PRK09087 132 NVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYV---DPHVVYYLVSRMER-SLFAAQTIVDRLDRLALE 205 (226)
T ss_pred ccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHH
Confidence 3688998 66 46899999999999999999998876654 56778899998886 677777777776655555
Q ss_pred cCCCccCHHHHHHHHHhc
Q 043051 535 KDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 535 ~~~~~It~edl~~Al~r~ 552 (845)
.+ ..||...++++++..
T Consensus 206 ~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 206 RK-SRITRALAAEVLNEM 222 (226)
T ss_pred hC-CCCCHHHHHHHHHhh
Confidence 44 569999999998765
No 145
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.39 E-value=3.1e-12 Score=140.39 Aligned_cols=139 Identities=19% Similarity=0.248 Sum_probs=104.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHh--hhhhhh----------hhHHHHHHHHHhcCCcEEEEcc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM--FVGVAA----------SRVKDLFASARSFAPSIIFIDE 406 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~--~vG~~~----------~~vr~lF~~A~~~aP~ILfIDE 406 (845)
.+++||.||||||||++|+.+|..++.|++.++++..... ++|... .-....+..|.. .+++|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 4579999999999999999999999999999998765543 344321 111234555554 578999999
Q ss_pred cchhccCCCCCCCCCCchHHHHHHHHHHHh-----hcCC--cc-cCCcEEEEEEcCCCC------------CCChhhhcc
Q 043051 407 IDAIGSKRGGPDIGGGGAEREQGLLQILTE-----MDGF--KV-STSQVLVIGATNRLD------------ILDPALLRK 466 (845)
Q Consensus 407 IDaL~~~R~~~~~~~~~~e~~~~L~qLL~e-----mdg~--~~-~~~~ViVIaaTN~pd------------~LDpALlRp 466 (845)
||.. ..+....|+.+|+. +++- .. ....+.||||+|..+ .|+.|++.
T Consensus 143 in~a------------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD- 209 (327)
T TIGR01650 143 YDAG------------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD- 209 (327)
T ss_pred hhcc------------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh-
Confidence 9987 34566778888874 1111 11 233589999999865 26899999
Q ss_pred CcccEEEEeCCCCHhHHHHHHHHHHh
Q 043051 467 GRFDKIVRVGLPSKDGRFAILKVHAR 492 (845)
Q Consensus 467 gRFdr~I~v~~Pd~eeR~eIL~~~l~ 492 (845)
||-.++.++.|+.++-.+|+.....
T Consensus 210 -RF~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 210 -RWSIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred -heeeEeeCCCCCHHHHHHHHHhhcc
Confidence 9988889999999999999987653
No 146
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.38 E-value=1.5e-11 Score=135.47 Aligned_cols=67 Identities=40% Similarity=0.653 Sum_probs=53.5
Q ss_pred CCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC--CCeEEeechhHH
Q 043051 303 VTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAG--VPFFAANGTDFV 376 (845)
Q Consensus 303 ~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg--~pfi~vs~sdf~ 376 (845)
...+.++||.++++..--+++.++.... ..+++||.||||||||.||-++|+++| +||..+++|++.
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~mIk~~K~-------aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDMIKEGKI-------AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred eccccccChHHHHHHHHHHHHHHhcccc-------cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 3467999999999999999999876442 357999999999999999999999997 899999998765
No 147
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.38 E-value=9.7e-12 Score=149.03 Aligned_cols=220 Identities=25% Similarity=0.296 Sum_probs=142.6
Q ss_pred CcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc--------------------
Q 043051 304 TFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA-------------------- 363 (845)
Q Consensus 304 tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el-------------------- 363 (845)
-|.+|+|++.++..|.-.. -++. ..||||+||||||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~a---v~~~---------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNA---VDPR---------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHh---hCCC---------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 4899999999987764322 1221 1479999999999999999999887
Q ss_pred ---------------CCCeEEeechhHHHhhhhhh--hhhH--------HHHHHHHHhcCCcEEEEcccchhccCCCCCC
Q 043051 364 ---------------GVPFFAANGTDFVEMFVGVA--ASRV--------KDLFASARSFAPSIIFIDEIDAIGSKRGGPD 418 (845)
Q Consensus 364 ---------------g~pfi~vs~sdf~~~~vG~~--~~~v--------r~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~ 418 (845)
..||+.+.++......+|.- ...+ ..++..| ..+|||||||+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l-------- 138 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLL-------- 138 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhC--------
Confidence 35777766554333333321 0000 1122222 2369999999999
Q ss_pred CCCCchHHHHHHHHHHHhh------cCCc-ccCCcEEEEEEcCCCC-CCChhhhccCcccEEEEeCCC-CHhHHHHHHHH
Q 043051 419 IGGGGAEREQGLLQILTEM------DGFK-VSTSQVLVIGATNRLD-ILDPALLRKGRFDKIVRVGLP-SKDGRFAILKV 489 (845)
Q Consensus 419 ~~~~~~e~~~~L~qLL~em------dg~~-~~~~~ViVIaaTN~pd-~LDpALlRpgRFdr~I~v~~P-d~eeR~eIL~~ 489 (845)
+...+..|++.+.+- +|.. ..+.++++|+++|..+ .|.++|+. ||+.+|.++.| +.+++.++++.
T Consensus 139 ----~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 139 ----DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred ----CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 456677777777641 1211 1224589999999653 58899999 99988988877 45777888765
Q ss_pred HHhhhcc--------c------------------chhhhhhHHHHHHHHc--cCC-cHHHHHHHHHHHHHHHHHcCCCcc
Q 043051 490 HARNKYF--------R------------------SEEEKDVLLQEIAELT--EDF-TGAELQNILNEAGILTARKDLDYI 540 (845)
Q Consensus 490 ~l~~~~l--------~------------------~~~~~d~dl~~LA~~t--~Gf-SgaDL~~LvneAal~A~r~~~~~I 540 (845)
....... . .-..++..+..++..+ .|. +.+-...+++-|..+|+.++++.|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V 292 (633)
T TIGR02442 213 RLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRV 292 (633)
T ss_pred HHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcC
Confidence 3321000 0 0000122333344333 244 455666788888889999999999
Q ss_pred CHHHHHHHHHhc
Q 043051 541 GQEELLEALKRQ 552 (845)
Q Consensus 541 t~edl~~Al~r~ 552 (845)
+.+|+.+|+.-+
T Consensus 293 ~~~Dv~~A~~lv 304 (633)
T TIGR02442 293 TAEDVREAAELV 304 (633)
T ss_pred CHHHHHHHHHHH
Confidence 999999988765
No 148
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.38 E-value=1e-11 Score=117.35 Aligned_cols=124 Identities=43% Similarity=0.655 Sum_probs=86.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHhhhhhhhhh---HHHHHHHHHhcCCcEEEEcccchhcc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEMFVGVAASR---VKDLFASARSFAPSIIFIDEIDAIGS 412 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~~vG~~~~~---vr~lF~~A~~~aP~ILfIDEIDaL~~ 412 (845)
.++++|+||||||||++++.+++.+ +.+++.+++.++........... ....+..+....+++|+|||++.+.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~- 97 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS- 97 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh-
Confidence 4689999999999999999999998 89999999987765433222221 1222333444568899999999871
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCC--CCChhhhccCcccEEEEeC
Q 043051 413 KRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLD--ILDPALLRKGRFDKIVRVG 476 (845)
Q Consensus 413 ~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd--~LDpALlRpgRFdr~I~v~ 476 (845)
......+.+++...........++.+|+++|... .+++.+.+ ||+.++.++
T Consensus 98 -----------~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 -----------RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred -----------HHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 2334455666655422111134588899998877 67888887 898777665
No 149
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.36 E-value=1.8e-11 Score=150.76 Aligned_cols=201 Identities=21% Similarity=0.289 Sum_probs=136.2
Q ss_pred ccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCce-EEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHh---
Q 043051 306 DDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKG-VLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEM--- 378 (845)
Q Consensus 306 ~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~Prg-VLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~--- 378 (845)
+.|+|++++.+.+.+.+...+..-. .-..|.| +||+||||||||.+|+++|..+ ...++.+++++|.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLE----DPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCC----CCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 4689999999988887765321100 0123565 7999999999999999999988 468999999988653
Q ss_pred ---------hhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc-----CCcccC
Q 043051 379 ---------FVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD-----GFKVST 444 (845)
Q Consensus 379 ---------~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd-----g~~~~~ 444 (845)
|+|..... .+.+..+++..+||+||||+.. +....+.|++++.+-- |-..+-
T Consensus 642 ~~l~g~~~gyvg~~~~g--~L~~~v~~~p~svvllDEieka------------~~~v~~~Llq~ld~g~l~d~~Gr~vd~ 707 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEGG--VLTEAVRRKPYSVVLLDEVEKA------------HPDVLELFYQVFDKGVMEDGEGREIDF 707 (852)
T ss_pred ccccCCCCCcccccccc--hHHHHHHhCCCcEEEEechhhc------------CHHHHHHHHHHhhcceeecCCCcEEec
Confidence 33332211 1334445566799999999976 4567778888887621 111223
Q ss_pred CcEEEEEEcCCCC-----------------------------CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhh-
Q 043051 445 SQVLVIGATNRLD-----------------------------ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNK- 494 (845)
Q Consensus 445 ~~ViVIaaTN~pd-----------------------------~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~- 494 (845)
.+.++|.|||... .+.|+++. |++ +|.|.+.+.++..+|+...+...
T Consensus 708 ~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~l~ 784 (852)
T TIGR03345 708 KNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDRIA 784 (852)
T ss_pred cccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHHHH
Confidence 4689999998511 14677777 887 89999999999999998877542
Q ss_pred -------cccchhhhhhHHHHHHHHccC--CcHHHHHHHHHHH
Q 043051 495 -------YFRSEEEKDVLLQEIAELTED--FTGAELQNILNEA 528 (845)
Q Consensus 495 -------~l~~~~~~d~dl~~LA~~t~G--fSgaDL~~LvneA 528 (845)
++.. ..++...+.|+....+ +-.+.+.++++.-
T Consensus 785 ~rl~~~~gi~l-~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~ 826 (852)
T TIGR03345 785 RRLKENHGAEL-VYSEALVEHIVARCTEVESGARNIDAILNQT 826 (852)
T ss_pred HHHHHhcCceE-EECHHHHHHHHHHcCCCCCChHHHHHHHHHH
Confidence 2111 1244557777776543 4567777777653
No 150
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.35 E-value=2.4e-11 Score=141.30 Aligned_cols=217 Identities=22% Similarity=0.277 Sum_probs=139.6
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc------------------
Q 043051 302 GVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA------------------ 363 (845)
Q Consensus 302 ~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el------------------ 363 (845)
..+|+||.|++.+++.+.-.+ .....++|+||||||||++|+++++.+
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa--------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAA--------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhc--------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 348999999999877654432 123579999999999999999998632
Q ss_pred ----------CCCeEEeechhHHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHH
Q 043051 364 ----------GVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQI 433 (845)
Q Consensus 364 ----------g~pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qL 433 (845)
..||....++......+|.+..--...+..|. .++|||||++.+ +...+..|.+.
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~---~GvLfLDEi~e~------------~~~~~~~L~~~ 318 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAH---NGVLFLDELPEF------------KRSVLDALREP 318 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccC---CCeEecCChhhC------------CHHHHHHHHHH
Confidence 23555554443333333433222223445543 389999999998 34567778887
Q ss_pred HHhhc-------CCcccCCcEEEEEEcCCC------C-----------------CCChhhhccCcccEEEEeCCCCHhH-
Q 043051 434 LTEMD-------GFKVSTSQVLVIGATNRL------D-----------------ILDPALLRKGRFDKIVRVGLPSKDG- 482 (845)
Q Consensus 434 L~emd-------g~~~~~~~ViVIaaTN~p------d-----------------~LDpALlRpgRFdr~I~v~~Pd~ee- 482 (845)
|+.-. +....+.++.+|+++|.. + .|...|+. |||.++.++.++..+
T Consensus 319 LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l 396 (499)
T TIGR00368 319 IEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKL 396 (499)
T ss_pred HHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHH
Confidence 75411 111123468999999963 1 47888888 999999998765432
Q ss_pred ------------HHHHHHHHH------hhh---ccc-------------chhhhhhHHHHHHHHccCCcHHHHHHHHHHH
Q 043051 483 ------------RFAILKVHA------RNK---YFR-------------SEEEKDVLLQEIAELTEDFTGAELQNILNEA 528 (845)
Q Consensus 483 ------------R~eIL~~~l------~~~---~l~-------------~~~~~d~dl~~LA~~t~GfSgaDL~~LvneA 528 (845)
|..+.+... ... .+. ........++... ...++|.+....+++-|
T Consensus 397 ~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~-~~~~lS~R~~~rilrvA 475 (499)
T TIGR00368 397 LSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGAL-NKLGLSSRATHRILKVA 475 (499)
T ss_pred hccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHH-HhcCCCchHHHHHHHHH
Confidence 222222111 110 010 0111111222222 23468999999999999
Q ss_pred HHHHHHcCCCccCHHHHHHHHH
Q 043051 529 GILTARKDLDYIGQEELLEALK 550 (845)
Q Consensus 529 al~A~r~~~~~It~edl~~Al~ 550 (845)
..+|...+.+.|+.+|+.+|+.
T Consensus 476 rTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 476 RTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHHHhhcCCCCCCHHHHHHHHh
Confidence 9999999999999999999985
No 151
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.34 E-value=2.8e-11 Score=149.66 Aligned_cols=207 Identities=21% Similarity=0.264 Sum_probs=138.6
Q ss_pred ccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHh----
Q 043051 306 DDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEM---- 378 (845)
Q Consensus 306 ~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~---- 378 (845)
+.|+|++.+.+.+.+.+...+..- ....++...+||+||||||||++|+++|..+ +.+++.++++++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl---~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGL---SDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccC---CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 569999999999888776542110 0011233568999999999999999999977 579999999987542
Q ss_pred -hhhhhh-----hhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhh---c--CCcccCCcE
Q 043051 379 -FVGVAA-----SRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEM---D--GFKVSTSQV 447 (845)
Q Consensus 379 -~vG~~~-----~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~em---d--g~~~~~~~V 447 (845)
..|... ..-..+.+..+....+|||||||+.+ +...++.|+++|.+- | |...+..+.
T Consensus 642 ~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka------------~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~ 709 (852)
T TIGR03346 642 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA------------HPDVFNVLLQVLDDGRLTDGQGRTVDFRNT 709 (852)
T ss_pred HhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC------------CHHHHHHHHHHHhcCceecCCCeEEecCCc
Confidence 222111 11122333444444579999999987 567788899988762 1 111223457
Q ss_pred EEEEEcCCCCC-------------------------CChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhc-------
Q 043051 448 LVIGATNRLDI-------------------------LDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKY------- 495 (845)
Q Consensus 448 iVIaaTN~pd~-------------------------LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~------- 495 (845)
+||+|||.... +.|.|+. |+|.++.|.+++.+...+|+...+....
T Consensus 710 iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~ 787 (852)
T TIGR03346 710 VIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERK 787 (852)
T ss_pred EEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 89999997221 3466776 9999999999999999999987765311
Q ss_pred ccchhhhhhHHHHHHHHc--cCCcHHHHHHHHHHHHH
Q 043051 496 FRSEEEKDVLLQEIAELT--EDFTGAELQNILNEAGI 530 (845)
Q Consensus 496 l~~~~~~d~dl~~LA~~t--~GfSgaDL~~LvneAal 530 (845)
+.. ...+..++.|++.. +.+..+.|.++++....
T Consensus 788 ~~l-~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~ 823 (852)
T TIGR03346 788 ITL-ELSDAALDFLAEAGYDPVYGARPLKRAIQREIE 823 (852)
T ss_pred Cee-cCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHH
Confidence 111 12445566777753 24567788888776653
No 152
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.34 E-value=5.8e-11 Score=125.77 Aligned_cols=129 Identities=25% Similarity=0.285 Sum_probs=94.8
Q ss_pred CcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCC-------------CCCCChhhhc
Q 043051 399 PSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNR-------------LDILDPALLR 465 (845)
Q Consensus 399 P~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~-------------pd~LDpALlR 465 (845)
|+||||||+|.| +-+...-|++.|+. +-. -+||.|||+ |..+++.|+.
T Consensus 297 PGVLFIDEVhML------------DiEcFTyL~kalES------~ia-PivifAsNrG~~~irGt~d~~sPhGip~dllD 357 (456)
T KOG1942|consen 297 PGVLFIDEVHML------------DIECFTYLHKALES------PIA-PIVIFASNRGMCTIRGTEDILSPHGIPPDLLD 357 (456)
T ss_pred CcceEeeehhhh------------hhHHHHHHHHHhcC------CCC-ceEEEecCCcceeecCCcCCCCCCCCCHHHhh
Confidence 889999999998 23444444444433 222 467778876 5557888887
Q ss_pred cCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 043051 466 KGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDLDYIGQEEL 545 (845)
Q Consensus 466 pgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl 545 (845)
|. .+|..-+++.++.++|++..+.-.++.. .+..+..++.....-|-+-..+++.-|.+.|...+++.|..+|+
T Consensus 358 --Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~---~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dv 431 (456)
T KOG1942|consen 358 --RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQV---EEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDV 431 (456)
T ss_pred --he-eEEeeccCCHHHHHHHHHHHHhhhccee---cHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccH
Confidence 54 3677778899999999999988877765 45567777776555566777778888888999999999999999
Q ss_pred HHHHHhc
Q 043051 546 LEALKRQ 552 (845)
Q Consensus 546 ~~Al~r~ 552 (845)
+++-+-.
T Consensus 432 ee~~~Lf 438 (456)
T KOG1942|consen 432 EEVTELF 438 (456)
T ss_pred HHHHHHH
Confidence 8876543
No 153
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.33 E-value=8.2e-12 Score=146.12 Aligned_cols=218 Identities=23% Similarity=0.328 Sum_probs=137.1
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHh
Q 043051 302 GVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEM 378 (845)
Q Consensus 302 ~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~ 378 (845)
..+|++++|.+...+.+.+.+..+.. ...+|||+|++||||+++|++|.... +.||+.++|+.+.+.
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~----------~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYAR----------SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 47799999999998888887765432 23579999999999999999997654 679999999866432
Q ss_pred -----hhhhhh--------hhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc-----CC
Q 043051 379 -----FVGVAA--------SRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD-----GF 440 (845)
Q Consensus 379 -----~vG~~~--------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd-----g~ 440 (845)
..|... ..-..+|+.|. .+.||||||+.| +...+..|+.+|.+-. +-
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L------------p~~~Q~~Ll~~L~~~~~~r~g~~ 342 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEM------------PLPLQTRLLRVLEEREVVRVGGT 342 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhC------------CHHHHHHHHHHHhcCcEEecCCC
Confidence 222110 11234566554 479999999999 5677888989887622 11
Q ss_pred cccCCcEEEEEEcCCCCCCChhhhccCcccE-------EEEeCCCCHhHHHHHHHHHH----hhhcccch-hhhhhHHHH
Q 043051 441 KVSTSQVLVIGATNRLDILDPALLRKGRFDK-------IVRVGLPSKDGRFAILKVHA----RNKYFRSE-EEKDVLLQE 508 (845)
Q Consensus 441 ~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr-------~I~v~~Pd~eeR~eIL~~~l----~~~~l~~~-~~~d~dl~~ 508 (845)
.....++.+|++||..- ..+...|+|.. .+.+..|+..+|.+.+..++ ........ ......+..
T Consensus 343 ~~~~~dvRiIaat~~~l---~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~ 419 (526)
T TIGR02329 343 EPVPVDVRVVAATHCAL---TTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQV 419 (526)
T ss_pred ceeeecceEEeccCCCH---HHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 11122468999998653 12222233321 57888899999877554333 22110000 011222222
Q ss_pred -------HHHHccCC--cHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 043051 509 -------IAELTEDF--TGAELQNILNEAGILTARKDLDYIGQEELLEAL 549 (845)
Q Consensus 509 -------LA~~t~Gf--SgaDL~~LvneAal~A~r~~~~~It~edl~~Al 549 (845)
|.. ..| +-++|.+++.+++..+.......|+.+++....
T Consensus 420 ~~~~~~~L~~--y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~~~ 467 (526)
T TIGR02329 420 LAGVADPLQR--YPWPGNVRELRNLVERLALELSAMPAGALTPDVLRALA 467 (526)
T ss_pred hHHHHHHHHh--CCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhhhc
Confidence 332 234 446999999998876543233578888875443
No 154
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.33 E-value=1.3e-11 Score=140.84 Aligned_cols=212 Identities=29% Similarity=0.380 Sum_probs=143.7
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHh
Q 043051 302 GVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEM 378 (845)
Q Consensus 302 ~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~ 378 (845)
...+.+++|...+.+++.+.+..+.... -+|||+|++||||.++||+|-+.+ +.||+.+||..+-+.
T Consensus 137 ~~~~~~liG~S~am~~l~~~i~kvA~s~----------a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 137 KSLGGELVGESPAMQQLRRLIAKVAPSD----------ASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccccCCceecCHHHHHHHHHHHHHhCCC----------CCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 4578999999999999999988775443 579999999999999999997665 569999999865422
Q ss_pred -----hhhhh-------hhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHh-----hcCCc
Q 043051 379 -----FVGVA-------ASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTE-----MDGFK 441 (845)
Q Consensus 379 -----~vG~~-------~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~e-----mdg~~ 441 (845)
..|.. ..+-...|+.|.. +.||||||..+ +-+.|..|+.+|++ +.|..
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~m------------pl~~Q~kLLRvLqe~~~~rvG~~~ 271 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEM------------PLELQVKLLRVLQEREFERVGGNK 271 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccC------------CHHHHHHHHHHHHcCeeEecCCCc
Confidence 23311 1222345666644 89999999988 56788999999987 22222
Q ss_pred ccCCcEEEEEEcCCCCCCChhhhccCcccE-------EEEeCCCCHhHHHHHHHHHHhhh--------cccchhhhhhHH
Q 043051 442 VSTSQVLVIGATNRLDILDPALLRKGRFDK-------IVRVGLPSKDGRFAILKVHARNK--------YFRSEEEKDVLL 506 (845)
Q Consensus 442 ~~~~~ViVIaaTN~pd~LDpALlRpgRFdr-------~I~v~~Pd~eeR~eIL~~~l~~~--------~l~~~~~~d~dl 506 (845)
.-.-+|.||+|||+.- ......|+|.. ++.+..|...+|.+.+..++... +... ....-
T Consensus 272 ~i~vdvRiIaaT~~dL---~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~---~~~s~ 345 (464)
T COG2204 272 PIKVDVRIIAATNRDL---EEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPP---KGFSP 345 (464)
T ss_pred ccceeeEEEeecCcCH---HHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCC---CCCCH
Confidence 2333599999999754 34444566643 78999999999988665444321 1111 12222
Q ss_pred HHHHHH-ccCCcH--HHHHHHHHHHHHHHHHcCCCccCHHHHHH
Q 043051 507 QEIAEL-TEDFTG--AELQNILNEAGILTARKDLDYIGQEELLE 547 (845)
Q Consensus 507 ~~LA~~-t~GfSg--aDL~~LvneAal~A~r~~~~~It~edl~~ 547 (845)
+.++.+ +..|.| ++|+|++..+++.+ ....|+.+++..
T Consensus 346 ~a~~~L~~y~WPGNVREL~N~ver~~il~---~~~~i~~~~l~~ 386 (464)
T COG2204 346 EALAALLAYDWPGNVRELENVVERAVILS---EGPEIEVEDLPL 386 (464)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHhcC---Cccccchhhccc
Confidence 333332 233444 58888888877665 345566666543
No 155
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.32 E-value=1e-11 Score=145.39 Aligned_cols=211 Identities=26% Similarity=0.355 Sum_probs=134.9
Q ss_pred CCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHh-----------cCCCeEEee
Q 043051 303 VTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGE-----------AGVPFFAAN 371 (845)
Q Consensus 303 ~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~e-----------lg~pfi~vs 371 (845)
.+|++++|.+...+.+.+.+..+.. ...+|||+|++||||+++|++|-.. .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~----------s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYAR----------SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 5799999999998888887765432 2357999999999999999999776 467999999
Q ss_pred chhHHHh-----hhhhhh--------hhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc
Q 043051 372 GTDFVEM-----FVGVAA--------SRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD 438 (845)
Q Consensus 372 ~sdf~~~-----~vG~~~--------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd 438 (845)
|+.+.+. ..|... ..-..+|+.|. .+.||||||+.| +...+..|+.+|.+-.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L------------p~~~Q~kLl~~L~e~~ 350 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEM------------PLPLQTRLLRVLEEKE 350 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhC------------CHHHHHHHHhhhhcCe
Confidence 9876432 222110 11224566654 479999999999 5677888989887622
Q ss_pred -----CCcccCCcEEEEEEcCCCCCCChhhhccCcccE-------EEEeCCCCHhHHHHHHHHHH----hhh----cccc
Q 043051 439 -----GFKVSTSQVLVIGATNRLDILDPALLRKGRFDK-------IVRVGLPSKDGRFAILKVHA----RNK----YFRS 498 (845)
Q Consensus 439 -----g~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr-------~I~v~~Pd~eeR~eIL~~~l----~~~----~l~~ 498 (845)
+......++.+|++||..- ..+...|+|.. .+.+..|+..+|.+.+..++ ... +...
T Consensus 351 ~~r~G~~~~~~~dvRiIaat~~~L---~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~ 427 (538)
T PRK15424 351 VTRVGGHQPVPVDVRVISATHCDL---EEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPF 427 (538)
T ss_pred EEecCCCceeccceEEEEecCCCH---HHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCC
Confidence 1111223478999998653 23333344442 57888999999877554333 221 1111
Q ss_pred hhhhhhHH-------HHHHHHccCC--cHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Q 043051 499 EEEKDVLL-------QEIAELTEDF--TGAELQNILNEAGILTARKDLDYIGQEELL 546 (845)
Q Consensus 499 ~~~~d~dl-------~~LA~~t~Gf--SgaDL~~LvneAal~A~r~~~~~It~edl~ 546 (845)
....+ ..|. ...| +-++|.+++.++++.+.......|+.+++.
T Consensus 428 ---~~~a~~~~~~a~~~L~--~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 428 ---SAALRQGLQQCETLLL--HYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred ---CHHHHHhhHHHHHHHH--hCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHhh
Confidence 11111 1222 2234 446999999998876543323456666653
No 156
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.31 E-value=7.5e-11 Score=145.37 Aligned_cols=204 Identities=21% Similarity=0.295 Sum_probs=133.2
Q ss_pred ccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCc-eEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHh---
Q 043051 306 DDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPK-GVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEM--- 378 (845)
Q Consensus 306 ~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~Pr-gVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~--- 378 (845)
+.|+||+++++.+...+...+..- . ....|. .+||+||||||||+||+++|..+ +.+++.+++++|.+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl---~-~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGL---K-NPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcc---c-CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 568999999999888775432100 0 011233 47999999999999999999987 478999999887532
Q ss_pred --hhhhh-----hhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhh-----cCCcccCCc
Q 043051 379 --FVGVA-----ASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEM-----DGFKVSTSQ 446 (845)
Q Consensus 379 --~vG~~-----~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~em-----dg~~~~~~~ 446 (845)
+.|.. -.....+.+..+....+||+|||+|.+ +....+.|++++++- .|-..+..+
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka------------~~~v~~~Llq~le~g~~~d~~g~~v~~~~ 652 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA------------HPDIFNLLLQILDDGRLTDSKGRTIDFKN 652 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC------------CHHHHHHHHHHhccCceecCCCcEEecCc
Confidence 22211 112233445555544589999999987 566778888888761 122223456
Q ss_pred EEEEEEcCCCCC-------------------------------------CChhhhccCcccEEEEeCCCCHhHHHHHHHH
Q 043051 447 VLVIGATNRLDI-------------------------------------LDPALLRKGRFDKIVRVGLPSKDGRFAILKV 489 (845)
Q Consensus 447 ViVIaaTN~pd~-------------------------------------LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~ 489 (845)
.++|+|||.... +.|.++. |+|.+|.|.+.+.++..+|+..
T Consensus 653 ~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~ 730 (821)
T CHL00095 653 TLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEI 730 (821)
T ss_pred eEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHH
Confidence 899999985311 2356666 9999999999999999999987
Q ss_pred HHhhhc-------ccchhhhhhHHHHHHHH--ccCCcHHHHHHHHHHH
Q 043051 490 HARNKY-------FRSEEEKDVLLQEIAEL--TEDFTGAELQNILNEA 528 (845)
Q Consensus 490 ~l~~~~-------l~~~~~~d~dl~~LA~~--t~GfSgaDL~~LvneA 528 (845)
.+.... +... .++...+.|+.. .+.+..+.|..+++.-
T Consensus 731 ~l~~l~~rl~~~~i~l~-~~~~~~~~La~~~~~~~~GAR~l~r~i~~~ 777 (821)
T CHL00095 731 MLKNLFKRLNEQGIQLE-VTERIKTLLIEEGYNPLYGARPLRRAIMRL 777 (821)
T ss_pred HHHHHHHHHHHCCcEEE-ECHHHHHHHHHhcCCCCCChhhHHHHHHHH
Confidence 776421 1111 123445566664 2334455666655433
No 157
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.30 E-value=1.2e-10 Score=143.87 Aligned_cols=206 Identities=21% Similarity=0.257 Sum_probs=133.3
Q ss_pred cccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHh---
Q 043051 305 FDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEM--- 378 (845)
Q Consensus 305 F~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~--- 378 (845)
++.|+|++.+.+.+...+...+..-.. .-++...+||+||||||||++|++||+.+ +.+|+.+++++|.+.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~---~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~ 643 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSD---PNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSV 643 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccC---CCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhH
Confidence 557999999999988887654311000 01112358999999999999999999887 568999999988643
Q ss_pred --hhhhhhh----hHHHHHHHH-HhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhh---c--CCcccCCc
Q 043051 379 --FVGVAAS----RVKDLFASA-RSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEM---D--GFKVSTSQ 446 (845)
Q Consensus 379 --~vG~~~~----~vr~lF~~A-~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~em---d--g~~~~~~~ 446 (845)
..|.... .-...+..+ +....+||+||||+.+ +...++.|++++.+- | |-..+..+
T Consensus 644 ~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka------------~~~v~~~Ll~ile~g~l~d~~gr~vd~rn 711 (857)
T PRK10865 644 SRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA------------HPDVFNILLQVLDDGRLTDGQGRTVDFRN 711 (857)
T ss_pred HHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC------------CHHHHHHHHHHHhhCceecCCceEEeecc
Confidence 2221100 001223333 3333489999999987 466788888888752 1 11122334
Q ss_pred EEEEEEcCCC-------------------------CCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhh-------
Q 043051 447 VLVIGATNRL-------------------------DILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNK------- 494 (845)
Q Consensus 447 ViVIaaTN~p-------------------------d~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~------- 494 (845)
.++|+|||.. ..+.|+|+. |+|.++.|.+++.+...+|++..+...
T Consensus 712 ~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~ 789 (857)
T PRK10865 712 TVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEER 789 (857)
T ss_pred cEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 6789999872 124578887 999999999999999999988777552
Q ss_pred cccchhhhhhHHHHHHHHc--cCCcHHHHHHHHHHH
Q 043051 495 YFRSEEEKDVLLQEIAELT--EDFTGAELQNILNEA 528 (845)
Q Consensus 495 ~l~~~~~~d~dl~~LA~~t--~GfSgaDL~~LvneA 528 (845)
+... ..++..++.|+... +.+..+.|+++++.-
T Consensus 790 gi~l-~is~~al~~L~~~gy~~~~GARpL~r~I~~~ 824 (857)
T PRK10865 790 GYEI-HISDEALKLLSENGYDPVYGARPLKRAIQQQ 824 (857)
T ss_pred CCcC-cCCHHHHHHHHHcCCCccCChHHHHHHHHHH
Confidence 1111 12344556666532 223355666666544
No 158
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.30 E-value=7.2e-11 Score=132.65 Aligned_cols=186 Identities=17% Similarity=0.168 Sum_probs=127.0
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeE-----------
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFF----------- 368 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi----------- 368 (845)
..|.+|++|+|++.+++.|...+.. .+.|..+||+||+|+||+++|.++|+.+-+.--
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 5688999999999999988876643 245778999999999999999999997732100
Q ss_pred ----Eeech-----------hHH--Hh---h------hhhhhhhHHHHHHHHHh----cCCcEEEEcccchhccCCCCCC
Q 043051 369 ----AANGT-----------DFV--EM---F------VGVAASRVKDLFASARS----FAPSIIFIDEIDAIGSKRGGPD 418 (845)
Q Consensus 369 ----~vs~s-----------df~--~~---~------vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~R~~~~ 418 (845)
.-.|. |+. +. - ...+...||++.+.+.. ..+.|++|||+|.+
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-------- 153 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-------- 153 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc--------
Confidence 00111 110 00 0 00123557776665532 34679999999998
Q ss_pred CCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccc
Q 043051 419 IGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRS 498 (845)
Q Consensus 419 ~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~ 498 (845)
+....+.|+..|++ .+.+.++|.+|+.++.+.+.+++++ ..+.|++|+.++..++|...... .
T Consensus 154 ----~~~aanaLLK~LEe------pp~~~~~IL~t~~~~~llpti~SRc---~~i~l~~l~~~~i~~~L~~~~~~---~- 216 (365)
T PRK07471 154 ----NANAANALLKVLEE------PPARSLFLLVSHAPARLLPTIRSRC---RKLRLRPLAPEDVIDALAAAGPD---L- 216 (365)
T ss_pred ----CHHHHHHHHHHHhc------CCCCeEEEEEECCchhchHHhhccc---eEEECCCCCHHHHHHHHHHhccc---C-
Confidence 45566777777766 3344778888999999999998854 58999999999999988765321 1
Q ss_pred hhhhhhHHHHHHHHccCCcHHHHHHHH
Q 043051 499 EEEKDVLLQEIAELTEDFTGAELQNIL 525 (845)
Q Consensus 499 ~~~~d~dl~~LA~~t~GfSgaDL~~Lv 525 (845)
.+..+..++..+.| ++....+++
T Consensus 217 ---~~~~~~~l~~~s~G-sp~~Al~ll 239 (365)
T PRK07471 217 ---PDDPRAALAALAEG-SVGRALRLA 239 (365)
T ss_pred ---CHHHHHHHHHHcCC-CHHHHHHHh
Confidence 22233567777777 554444444
No 159
>PHA02244 ATPase-like protein
Probab=99.29 E-value=1e-10 Score=129.88 Aligned_cols=150 Identities=27% Similarity=0.362 Sum_probs=98.9
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHh--h
Q 043051 302 GVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM--F 379 (845)
Q Consensus 302 ~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~--~ 379 (845)
.+++.-+.+..........+..++.. ..+|||+||||||||++|+++|..++.||+.+++. .+. .
T Consensus 93 ~~d~~~ig~sp~~~~~~~ri~r~l~~-----------~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l--~d~~~L 159 (383)
T PHA02244 93 GIDTTKIASNPTFHYETADIAKIVNA-----------NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI--MDEFEL 159 (383)
T ss_pred hCCCcccCCCHHHHHHHHHHHHHHhc-----------CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC--hHHHhh
Confidence 34444445555555555555555543 34799999999999999999999999999999853 111 1
Q ss_pred hhh--hhhhH-HHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHh-----hcCCcccCCcEEEEE
Q 043051 380 VGV--AASRV-KDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTE-----MDGFKVSTSQVLVIG 451 (845)
Q Consensus 380 vG~--~~~~v-r~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~e-----mdg~~~~~~~ViVIa 451 (845)
.|. ..... ..-|-.|.. .+++|+||||+.+ +......|+.++.. .++....+.++.+|+
T Consensus 160 ~G~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a------------~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIA 226 (383)
T PHA02244 160 KGFIDANGKFHETPFYEAFK-KGGLFFIDEIDAS------------IPEALIIINSAIANKFFDFADERVTAHEDFRVIS 226 (383)
T ss_pred cccccccccccchHHHHHhh-cCCEEEEeCcCcC------------CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEE
Confidence 111 00011 122333333 4689999999987 34556667777653 222222335689999
Q ss_pred EcCCC-----------CCCChhhhccCcccEEEEeCCCCH
Q 043051 452 ATNRL-----------DILDPALLRKGRFDKIVRVGLPSK 480 (845)
Q Consensus 452 aTN~p-----------d~LDpALlRpgRFdr~I~v~~Pd~ 480 (845)
|+|.+ ..|++++++ ||- .|.++.|+.
T Consensus 227 TsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp~~ 263 (383)
T PHA02244 227 AGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYDEK 263 (383)
T ss_pred eeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCCcH
Confidence 99973 468999999 995 799999983
No 160
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.29 E-value=4.8e-11 Score=141.66 Aligned_cols=231 Identities=12% Similarity=0.118 Sum_probs=137.5
Q ss_pred ccccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEE-eec
Q 043051 294 FISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFA-ANG 372 (845)
Q Consensus 294 ~~~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~-vs~ 372 (845)
..|.++++|.+++||+|+++..++|..++..... +..+.+.++|+||||||||++++.+|++++..++. .+.
T Consensus 72 ~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~-------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~np 144 (637)
T TIGR00602 72 EPWVEKYKPETQHELAVHKKKIEEVETWLKAQVL-------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNP 144 (637)
T ss_pred CchHHHhCCCCHHHhcCcHHHHHHHHHHHHhccc-------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhh
Confidence 3577789999999999999988887777654321 22233469999999999999999999999866543 111
Q ss_pred hh---H----------HHhh--hhhhhhhHHHHHHHHHh----------cCCcEEEEcccchhccCCCCCCCCCCchHHH
Q 043051 373 TD---F----------VEMF--VGVAASRVKDLFASARS----------FAPSIIFIDEIDAIGSKRGGPDIGGGGAERE 427 (845)
Q Consensus 373 sd---f----------~~~~--vG~~~~~vr~lF~~A~~----------~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~ 427 (845)
.. . ...+ .......++.++..+.. ....|||||||+.+... . .. ..
T Consensus 145 v~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~-------~~-~l 215 (637)
T TIGR00602 145 TLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D-------TR-AL 215 (637)
T ss_pred hhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h-------HH-HH
Confidence 10 0 0000 01123344555555542 23569999999987421 1 12 22
Q ss_pred HHHHH-HHHhhcCCcccCCcEEEEEEcC-CCC--------------CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHH
Q 043051 428 QGLLQ-ILTEMDGFKVSTSQVLVIGATN-RLD--------------ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHA 491 (845)
Q Consensus 428 ~~L~q-LL~emdg~~~~~~~ViVIaaTN-~pd--------------~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l 491 (845)
+.++. +..+ .+.+.+|++++ .+. .|.+++++..|. .+|.|++.+.....+.|+..+
T Consensus 216 q~lLr~~~~e-------~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl 287 (637)
T TIGR00602 216 HEILRWKYVS-------IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIV 287 (637)
T ss_pred HHHHHHHhhc-------CCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHH
Confidence 22322 2222 22233444333 111 134788864454 379999999999888888887
Q ss_pred hhhcccchh----hhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHc-------CCCccCHHHHHHHHHhc
Q 043051 492 RNKYFRSEE----EKDVLLQEIAELTEDFTGAELQNILNEAGILTARK-------DLDYIGQEELLEALKRQ 552 (845)
Q Consensus 492 ~~~~l~~~~----~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~-------~~~~It~edl~~Al~r~ 552 (845)
......... .....+..|+....| |++.+++...+.+.+. +...++..++..+..+.
T Consensus 288 ~~E~~~~~~~~~~p~~~~l~~I~~~s~G----DiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~k~ 355 (637)
T TIGR00602 288 TIEAKKNGEKIKVPKKTSVELLCQGCSG----DIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKIKG 355 (637)
T ss_pred HhhhhccccccccCCHHHHHHHHHhCCC----hHHHHHHHHHHHHhcCCccccccccccccHHHhhhccccC
Confidence 654321111 023456777775444 8998888776654432 22345665655554443
No 161
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.29 E-value=3.4e-11 Score=141.37 Aligned_cols=214 Identities=21% Similarity=0.207 Sum_probs=133.3
Q ss_pred CCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHH
Q 043051 301 TGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVE 377 (845)
Q Consensus 301 ~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~ 377 (845)
...+|++++|.+...+.+.+.+..+.. ...+|||+|++||||+++|+++.... +.||+.++|+.+.+
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAM----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 467899999999877777666554322 23569999999999999999986544 47999999987643
Q ss_pred h-----hhhhhh-------hhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc-----CC
Q 043051 378 M-----FVGVAA-------SRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD-----GF 440 (845)
Q Consensus 378 ~-----~vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd-----g~ 440 (845)
. ..|... ..-..+|+.|. .+.|||||||.+ +...+..|.++|.+-. +-
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L------------~~~~Q~~Ll~~l~~~~~~~~g~~ 333 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEM------------SPRMQAKLLRFLNDGTFRRVGED 333 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhC------------CHHHHHHHHHHHhcCCcccCCCC
Confidence 2 223211 11224566553 479999999999 4567888888887621 10
Q ss_pred cccCCcEEEEEEcCCCC-------CCChhhhccCcccEEEEeCCCCHhHHHHHHHH----HHh----hhcccchhhhhhH
Q 043051 441 KVSTSQVLVIGATNRLD-------ILDPALLRKGRFDKIVRVGLPSKDGRFAILKV----HAR----NKYFRSEEEKDVL 505 (845)
Q Consensus 441 ~~~~~~ViVIaaTN~pd-------~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~----~l~----~~~l~~~~~~d~d 505 (845)
.....++.||++|+.+- .+.+.|.. |+. .+.+..|+..+|.+.+.. ++. ..+..........
T Consensus 334 ~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a 410 (520)
T PRK10820 334 HEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADL 410 (520)
T ss_pred cceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHH
Confidence 11123578999987643 13344544 443 578889999888754432 222 2221111123334
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 043051 506 LQEIAELTEDFTGAELQNILNEAGILTARKDLDYIGQEEL 545 (845)
Q Consensus 506 l~~LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl 545 (845)
++.|....---+-++|.+++..|+..+ ....|+.+|+
T Consensus 411 ~~~L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 411 NTVLTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 444444321114458888888876543 3456787775
No 162
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.28 E-value=1.1e-10 Score=135.85 Aligned_cols=216 Identities=25% Similarity=0.308 Sum_probs=144.4
Q ss_pred ccccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHh----hc-------------------CCCCCceEEEEcCCCC
Q 043051 294 FISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQ----NK-------------------GIYCPKGVLLHGPPGT 350 (845)
Q Consensus 294 ~~~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~----~~-------------------g~~~PrgVLL~GPPGT 350 (845)
.+|.+++.+..|.|+.|.+.+-+.+.-.+..- .+.-|. ++ +-+..|-+||+||||-
T Consensus 259 kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~W-D~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGl 337 (877)
T KOG1969|consen 259 KLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQW-DPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGL 337 (877)
T ss_pred ceeecccChhHHHHHhcchhHHHHHHHHHHhh-cHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCC
Confidence 37888899999999999998877655443221 122222 11 1222367899999999
Q ss_pred hHHHHHHHHHHhcCCCeEEeechhHHHhhhhhhhhhHHHHHHHHHh--------cCCcEEEEcccchhccCCCCCCCCCC
Q 043051 351 GKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARS--------FAPSIIFIDEIDAIGSKRGGPDIGGG 422 (845)
Q Consensus 351 GKT~LArALA~elg~pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~~--------~aP~ILfIDEIDaL~~~R~~~~~~~~ 422 (845)
|||+||+.+|+.+|..++.||+||=. ++..++.-++.|.. ..|..|+|||||.-
T Consensus 338 GKTTLAHViAkqaGYsVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa------------ 399 (877)
T KOG1969|consen 338 GKTTLAHVIAKQAGYSVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA------------ 399 (877)
T ss_pred ChhHHHHHHHHhcCceEEEecccccc------cHHHHHHHHHHHHhhccccccCCCcceEEEecccCC------------
Confidence 99999999999999999999999843 23333433333322 35888999999864
Q ss_pred chHHHHHHHHHHHh----hcCCcc--c-------C--CcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHH
Q 043051 423 GAEREQGLLQILTE----MDGFKV--S-------T--SQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAIL 487 (845)
Q Consensus 423 ~~e~~~~L~qLL~e----mdg~~~--~-------~--~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL 487 (845)
......+++.++.. ..|-.. . . -.--|||.+|... -|+|+.---|..+|.|.+|...-..+-|
T Consensus 400 ~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL 477 (877)
T KOG1969|consen 400 PRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVERL 477 (877)
T ss_pred cHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHHH
Confidence 23445566666652 111100 0 0 0124677777544 4777532237889999999998888888
Q ss_pred HHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCC
Q 043051 488 KVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDL 537 (845)
Q Consensus 488 ~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~ 537 (845)
+..+.+.++.. +...+..|+..|.+ ||++.+|....++....+
T Consensus 478 ~~IC~rE~mr~---d~~aL~~L~el~~~----DIRsCINtLQfLa~~~~r 520 (877)
T KOG1969|consen 478 NEICHRENMRA---DSKALNALCELTQN----DIRSCINTLQFLASNVDR 520 (877)
T ss_pred HHHHhhhcCCC---CHHHHHHHHHHhcc----hHHHHHHHHHHHHHhccc
Confidence 88888777664 33445566666554 999999999888876543
No 163
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.28 E-value=2.3e-11 Score=143.28 Aligned_cols=217 Identities=24% Similarity=0.278 Sum_probs=136.4
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHH
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFV 376 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~ 376 (845)
.+..+|++++|.+...+.+.+.+..+.. ...+|||+|++|||||++|++|.... +.||+.++|+.+.
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVAR----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 4567899999999998888887766542 23579999999999999999998775 5799999998764
Q ss_pred Hhh-----hhhhh-------hhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc-----C
Q 043051 377 EMF-----VGVAA-------SRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD-----G 439 (845)
Q Consensus 377 ~~~-----vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd-----g 439 (845)
+.. .|... ..-...|+.| ..++|||||||.+ +...+..|+++|.+-. +
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L------------~~~~Q~~Ll~~l~~~~~~~~~~ 324 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEI------------SPAFQAKLLRVLQEGEFERVGG 324 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhC------------CHHHHHHHHHHHhcCcEEECCC
Confidence 321 12110 0011223333 3589999999999 4567888888887621 1
Q ss_pred CcccCCcEEEEEEcCCCC-------CCChhhhccCcccEEEEeCCCCHhHHHHHH----HHHHhhhcccc---hhhhhhH
Q 043051 440 FKVSTSQVLVIGATNRLD-------ILDPALLRKGRFDKIVRVGLPSKDGRFAIL----KVHARNKYFRS---EEEKDVL 505 (845)
Q Consensus 440 ~~~~~~~ViVIaaTN~pd-------~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL----~~~l~~~~l~~---~~~~d~d 505 (845)
-.....++.+|++|+..- .+.+.|.. |+. .+.+..|+..+|.+.+ ..++....... ....+..
T Consensus 325 ~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a 401 (534)
T TIGR01817 325 NRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RIN-VVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSA 401 (534)
T ss_pred CceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--Hhc-CCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHH
Confidence 111122488999987642 12233333 332 4567778777775543 33333221000 1123445
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Q 043051 506 LQEIAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLE 547 (845)
Q Consensus 506 l~~LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~ 547 (845)
++.|....---+-++|.+++..|+..+ ....|+.+|+..
T Consensus 402 ~~~L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~~ 440 (534)
T TIGR01817 402 IRVLMSCKWPGNVRELENCLERTATLS---RSGTITRSDFSC 440 (534)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCch
Confidence 556665542225679999998887554 345788888753
No 164
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.28 E-value=1.4e-10 Score=129.81 Aligned_cols=190 Identities=16% Similarity=0.164 Sum_probs=127.0
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-------CeEEe--
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGV-------PFFAA-- 370 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~-------pfi~v-- 370 (845)
..|..|++|+|++++++.|...+.. .+.|..+||+||+|+|||++|+++|+.+.+ |....
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~-----------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYRE-----------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHc-----------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 5688999999999999988877642 235778999999999999999999998854 21111
Q ss_pred --echhHHHh----------h------------hhhhhhhHHHHHHHHHh----cCCcEEEEcccchhccCCCCCCCCCC
Q 043051 371 --NGTDFVEM----------F------------VGVAASRVKDLFASARS----FAPSIIFIDEIDAIGSKRGGPDIGGG 422 (845)
Q Consensus 371 --s~sdf~~~----------~------------vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~R~~~~~~~~ 422 (845)
.|...... + ...+.+.+|.+-+.... ....|++|||+|.+
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l------------ 153 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM------------ 153 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc------------
Confidence 11111000 0 01123455555443322 23459999999999
Q ss_pred chHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhh
Q 043051 423 GAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEK 502 (845)
Q Consensus 423 ~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~ 502 (845)
+....+.|+..|++ .+.+.++|..|+.++.+.|.+++ |. ..+.+++|+.++..++|........ ..
T Consensus 154 ~~~aanaLLk~LEE------pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~-----~~ 219 (351)
T PRK09112 154 NRNAANAILKTLEE------PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQG-----SD 219 (351)
T ss_pred CHHHHHHHHHHHhc------CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccC-----CC
Confidence 34556667776665 23346666667888888899998 44 5899999999999999986432211 12
Q ss_pred hhHHHHHHHHccCCcHHHHHHHHHH
Q 043051 503 DVLLQEIAELTEDFTGAELQNILNE 527 (845)
Q Consensus 503 d~dl~~LA~~t~GfSgaDL~~Lvne 527 (845)
+..+..+++.+.| +++...++++.
T Consensus 220 ~~~~~~i~~~s~G-~pr~Al~ll~~ 243 (351)
T PRK09112 220 GEITEALLQRSKG-SVRKALLLLNY 243 (351)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHhc
Confidence 3446777887777 66666565543
No 165
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.27 E-value=8.1e-11 Score=137.91 Aligned_cols=227 Identities=16% Similarity=0.218 Sum_probs=137.4
Q ss_pred cccccHHHHHHHHHHHHHhhCcHHHhh--cCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-eEEe---echhHHHhhh
Q 043051 307 DFAGQEYIKRELQEIVRILKNDEEFQN--KGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVP-FFAA---NGTDFVEMFV 380 (845)
Q Consensus 307 dVvG~de~k~eL~eiv~~Lk~p~~~~~--~g~~~PrgVLL~GPPGTGKT~LArALA~elg~p-fi~v---s~sdf~~~~v 380 (845)
++.|++.+|..+.-.+ +....+... ...+-..+|||+|+||||||++|+++++.+... |... ++..+.....
T Consensus 204 ~i~G~~~~k~~l~l~l--~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 204 SIYGHEDIKKAILLLL--FGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred cccCcHHHHHHHHHHH--hCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 5789999887664332 221111001 112223479999999999999999999987533 3321 2221211000
Q ss_pred h---hhhhhHH-HHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhh------cCCcc-cCCcEEE
Q 043051 381 G---VAASRVK-DLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEM------DGFKV-STSQVLV 449 (845)
Q Consensus 381 G---~~~~~vr-~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~em------dg~~~-~~~~ViV 449 (845)
. .+.-.++ ..+..| ..++++|||+|.+ +...+..|.+.+++- .|... -+.++.|
T Consensus 282 ~~~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l------------~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~v 346 (509)
T smart00350 282 RDPETREFTLEGGALVLA---DNGVCCIDEFDKM------------DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSV 346 (509)
T ss_pred EccCcceEEecCccEEec---CCCEEEEechhhC------------CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEE
Confidence 0 0000000 111122 3479999999998 345567777776541 12111 1245899
Q ss_pred EEEcCCCC-------------CCChhhhccCcccEEEEe-CCCCHhHHHHHHHHHHhhhcc------c-----c------
Q 043051 450 IGATNRLD-------------ILDPALLRKGRFDKIVRV-GLPSKDGRFAILKVHARNKYF------R-----S------ 498 (845)
Q Consensus 450 IaaTN~pd-------------~LDpALlRpgRFdr~I~v-~~Pd~eeR~eIL~~~l~~~~l------~-----~------ 498 (845)
|||+|+.+ .|++++++ |||..+.+ +.|+.+...+|.+..+..... . .
T Consensus 347 iAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 424 (509)
T smart00350 347 LAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLR 424 (509)
T ss_pred EEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHH
Confidence 99999763 48999999 99986544 789999988888765432110 0 0
Q ss_pred -----------hhhhhhHHHHHHH-----H----------ccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 499 -----------EEEKDVLLQEIAE-----L----------TEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 499 -----------~~~~d~dl~~LA~-----~----------t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
...++...+.+.. + ..+.|.+.+..+++-|..+|..+.++.|+.+|+.+|+.-+
T Consensus 425 ~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~ 504 (509)
T smart00350 425 KYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLL 504 (509)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 0001111111111 1 1256888999999999999999999999999999998755
No 166
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.27 E-value=6.2e-11 Score=131.59 Aligned_cols=197 Identities=22% Similarity=0.217 Sum_probs=123.8
Q ss_pred ccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHh-----h
Q 043051 308 FAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEM-----F 379 (845)
Q Consensus 308 VvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~-----~ 379 (845)
++|.+...+.+.+.+..+.. ...+|||+|++||||+++|++|.... +.||+.++|+.+.+. .
T Consensus 1 liG~S~~m~~~~~~~~~~a~----------~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----------LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 46777777777776665432 24579999999999999999996654 579999999865322 1
Q ss_pred hhhhh-------hhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc-----CCcccCCcE
Q 043051 380 VGVAA-------SRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD-----GFKVSTSQV 447 (845)
Q Consensus 380 vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd-----g~~~~~~~V 447 (845)
.|... ..-..+|+.|. .++|||||||.| +...+..|+.+|.+-. +......++
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATA------------SLLVQEKLLRVIEYGEFERVGGSQTLQVDV 135 (329)
T ss_pred hccccccccCcccccCCchhhCC---CCEEEeCChHhC------------CHHHHHHHHHHHHcCcEEecCCCceeccce
Confidence 12110 11123455543 589999999999 5677888888887621 111123458
Q ss_pred EEEEEcCCCC-------CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhh----h----cccc-hhhhhhHHHHHHH
Q 043051 448 LVIGATNRLD-------ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARN----K----YFRS-EEEKDVLLQEIAE 511 (845)
Q Consensus 448 iVIaaTN~pd-------~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~----~----~l~~-~~~~d~dl~~LA~ 511 (845)
.+|++||..- .+.+.|.. ||. .+.|..|+..+|.+.+..++.. . +... .......++.|..
T Consensus 136 RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~ 212 (329)
T TIGR02974 136 RLVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLE 212 (329)
T ss_pred EEEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHh
Confidence 9999998642 23455555 554 4678899999887765433322 1 1111 1123344555555
Q ss_pred HccCCcHHHHHHHHHHHHHHH
Q 043051 512 LTEDFTGAELQNILNEAGILT 532 (845)
Q Consensus 512 ~t~GfSgaDL~~LvneAal~A 532 (845)
..---+-++|.+++..|++.+
T Consensus 213 y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 213 YHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred CCCCchHHHHHHHHHHHHHhC
Confidence 442225568888888876654
No 167
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.27 E-value=5.7e-11 Score=139.21 Aligned_cols=202 Identities=22% Similarity=0.272 Sum_probs=130.4
Q ss_pred CcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHh--
Q 043051 304 TFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEM-- 378 (845)
Q Consensus 304 tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~-- 378 (845)
++.+++|.+...+.+.+.+..+.. .+.+|||+|++||||+++|++|.... +.||+.++|+.+.+.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~----------~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAA----------SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhC----------CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 688999999998888887766432 24689999999999999999998764 579999999876432
Q ss_pred ---hhhhhh-------hhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc-----CCccc
Q 043051 379 ---FVGVAA-------SRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD-----GFKVS 443 (845)
Q Consensus 379 ---~vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd-----g~~~~ 443 (845)
..|... ......|+.| ..++|||||||.| +...+..|.++|.+-. +-...
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~ 319 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGEL------------PLALQAKLLRVLQYGEIQRVGSDRSL 319 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhC------------CHHHHHHHHHHHhcCCEeeCCCCcce
Confidence 222110 1112245554 3589999999999 4567888888887521 11112
Q ss_pred CCcEEEEEEcCCCC-------CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHH----hhh----cccchhhhhhHHHH
Q 043051 444 TSQVLVIGATNRLD-------ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHA----RNK----YFRSEEEKDVLLQE 508 (845)
Q Consensus 444 ~~~ViVIaaTN~pd-------~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l----~~~----~l~~~~~~d~dl~~ 508 (845)
..++.+|++||..- .+.+.|.. |+. .+.|..|+..+|.+.+...+ ... +..........+..
T Consensus 320 ~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~ 396 (509)
T PRK05022 320 RVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAA 396 (509)
T ss_pred ecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 23589999998753 12333333 332 57788999999877554332 221 11111123344555
Q ss_pred HHHHccCCcHHHHHHHHHHHHHHHH
Q 043051 509 IAELTEDFTGAELQNILNEAGILTA 533 (845)
Q Consensus 509 LA~~t~GfSgaDL~~LvneAal~A~ 533 (845)
|....---+-++|+++++.|++.+.
T Consensus 397 L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 397 LLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 5544322255799999999987764
No 168
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.27 E-value=9.6e-11 Score=139.58 Aligned_cols=126 Identities=21% Similarity=0.232 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHhh----cCC-----------cccCCcEEEEEEcCCC--CCCChhhhccCccc---EEEEeC--CC-CH
Q 043051 424 AEREQGLLQILTEM----DGF-----------KVSTSQVLVIGATNRL--DILDPALLRKGRFD---KIVRVG--LP-SK 480 (845)
Q Consensus 424 ~e~~~~L~qLL~em----dg~-----------~~~~~~ViVIaaTN~p--d~LDpALlRpgRFd---r~I~v~--~P-d~ 480 (845)
...+..|.++|.+- .+. ..-+.++.||+++|.. ..+||.|++ ||+ ..+.|+ .| +.
T Consensus 231 ~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~ 308 (608)
T TIGR00764 231 LEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTP 308 (608)
T ss_pred HHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCH
Confidence 55677788877651 111 0112358899999975 468999999 998 555554 34 44
Q ss_pred hHHHHHHHHHHh---hhcccchhhhhhHHHHHHH---Hcc------CCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 043051 481 DGRFAILKVHAR---NKYFRSEEEKDVLLQEIAE---LTE------DFTGAELQNILNEAGILTARKDLDYIGQEELLEA 548 (845)
Q Consensus 481 eeR~eIL~~~l~---~~~l~~~~~~d~dl~~LA~---~t~------GfSgaDL~~LvneAal~A~r~~~~~It~edl~~A 548 (845)
+.|.++.+.... ..+.. ...++..+..+.+ +.. ..+.++|.+++++|..+|..++...|+.+|+.+|
T Consensus 309 e~~~~~~~~i~~~~~r~G~l-~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~A 387 (608)
T TIGR00764 309 ENRDKLVQFVAQEVKKDGRI-PHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKA 387 (608)
T ss_pred HHHHHHHHHHHHHHHHhCCC-CcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHH
Confidence 555555443322 22111 1112333333332 111 1356899999999988888888889999999999
Q ss_pred HHhc
Q 043051 549 LKRQ 552 (845)
Q Consensus 549 l~r~ 552 (845)
++..
T Consensus 388 i~~~ 391 (608)
T TIGR00764 388 KKLA 391 (608)
T ss_pred HHHH
Confidence 8866
No 169
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.26 E-value=1.3e-10 Score=127.94 Aligned_cols=170 Identities=15% Similarity=0.248 Sum_probs=118.2
Q ss_pred CcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--------eEEeechhH
Q 043051 304 TFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVP--------FFAANGTDF 375 (845)
Q Consensus 304 tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~p--------fi~vs~sdf 375 (845)
+|++|+|++.+++.|...+.. .+.|..+||+||+|+|||++|+++|+.+-+. ++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-----------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~- 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-----------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN- 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-----------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc-
Confidence 699999999999988776532 3457789999999999999999999976332 22222210
Q ss_pred HHhhhhhhhhhHHHHHHHHHh----cCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEE
Q 043051 376 VEMFVGVAASRVKDLFASARS----FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIG 451 (845)
Q Consensus 376 ~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIa 451 (845)
. ...+...+|++.+.+.. ....|++||++|.+ +....+.|+..|++ ++.++++|.
T Consensus 70 -~--~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m------------~~~a~naLLK~LEe------pp~~t~~il 128 (313)
T PRK05564 70 -K--KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM------------TEQAQNAFLKTIEE------PPKGVFIIL 128 (313)
T ss_pred -C--CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhc------------CHHHHHHHHHHhcC------CCCCeEEEE
Confidence 0 11234567777765532 22359999999998 44566677777766 334466666
Q ss_pred EcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCC
Q 043051 452 ATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDF 516 (845)
Q Consensus 452 aTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~Gf 516 (845)
+|+.++.|-|.++++| .++.|..|+.++....+...+.. . ....+..++..+.|-
T Consensus 129 ~~~~~~~ll~TI~SRc---~~~~~~~~~~~~~~~~l~~~~~~--~-----~~~~~~~l~~~~~g~ 183 (313)
T PRK05564 129 LCENLEQILDTIKSRC---QIYKLNRLSKEEIEKFISYKYND--I-----KEEEKKSAIAFSDGI 183 (313)
T ss_pred EeCChHhCcHHHHhhc---eeeeCCCcCHHHHHHHHHHHhcC--C-----CHHHHHHHHHHcCCC
Confidence 7788899999999966 58999999999888877655431 1 233456677776663
No 170
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.26 E-value=2.6e-11 Score=136.11 Aligned_cols=204 Identities=27% Similarity=0.341 Sum_probs=134.7
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHh----cCCCeEEeechhH
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGE----AGVPFFAANGTDF 375 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~e----lg~pfi~vs~sdf 375 (845)
.....|++++|.+...+++.+-+..+- +...+|||+|++||||+++|++|... .+.||+.+||+.+
T Consensus 72 ~~~~~~~~LIG~~~~~~~~~eqik~~a----------p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 72 LKSEALDDLIGESPSLQELREQIKAYA----------PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred ccchhhhhhhccCHHHHHHHHHHHhhC----------CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 345679999999988777777665521 22468999999999999999999533 4679999999987
Q ss_pred HHh-------------hhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHh-----h
Q 043051 376 VEM-------------FVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTE-----M 437 (845)
Q Consensus 376 ~~~-------------~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~e-----m 437 (845)
.+. |.| ....-..+|++|.. ++||+|||+.+ ..+.+..|+.+|++ +
T Consensus 142 ~en~~~~eLFG~~kGaftG-a~~~k~Glfe~A~G---GtLfLDEI~~L------------P~~~Q~kLl~~le~g~~~rv 205 (403)
T COG1221 142 SENLQEAELFGHEKGAFTG-AQGGKAGLFEQANG---GTLFLDEIHRL------------PPEGQEKLLRVLEEGEYRRV 205 (403)
T ss_pred CcCHHHHHHhccccceeec-ccCCcCchheecCC---CEEehhhhhhC------------CHhHHHHHHHHHHcCceEec
Confidence 643 223 23444567777754 89999999999 56788899999988 4
Q ss_pred cCCcccCCcEEEEEEcCCC--CCCCh--hhhccCcccEEEEeCCCCHhHHHHHHH--------HHHhhhcccchhhhhhH
Q 043051 438 DGFKVSTSQVLVIGATNRL--DILDP--ALLRKGRFDKIVRVGLPSKDGRFAILK--------VHARNKYFRSEEEKDVL 505 (845)
Q Consensus 438 dg~~~~~~~ViVIaaTN~p--d~LDp--ALlRpgRFdr~I~v~~Pd~eeR~eIL~--------~~l~~~~l~~~~~~d~d 505 (845)
.+-......|.+|+|||.. +.+-. .|.++ |+ .+.|.+|+..+|..-+. .+++..+..........
T Consensus 206 G~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~--~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a 282 (403)
T COG1221 206 GGSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LN--ILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEA 282 (403)
T ss_pred CCCCCcCCCceeeeccccCHHHHHHhhcchhhh-hc--CceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHH
Confidence 3433344569999999742 22222 34331 22 45677888888865433 33334444332222222
Q ss_pred HHHHHH-HccCCcHHHHHHHHHHHHHHHH
Q 043051 506 LQEIAE-LTEDFTGAELQNILNEAGILTA 533 (845)
Q Consensus 506 l~~LA~-~t~GfSgaDL~~LvneAal~A~ 533 (845)
+..+-. ..+| +-++|.|++..++..+.
T Consensus 283 ~~~L~~y~~pG-NirELkN~Ve~~~~~~~ 310 (403)
T COG1221 283 LRALLAYDWPG-NIRELKNLVERAVAQAS 310 (403)
T ss_pred HHHHHhCCCCC-cHHHHHHHHHHHHHHhc
Confidence 333333 3345 66799999998876663
No 171
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=8.3e-11 Score=140.56 Aligned_cols=202 Identities=24% Similarity=0.295 Sum_probs=137.0
Q ss_pred ccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC---CCeEEeechhHHHh----
Q 043051 306 DDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAG---VPFFAANGTDFVEM---- 378 (845)
Q Consensus 306 ~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg---~pfi~vs~sdf~~~---- 378 (845)
+.|+||+++...+...+..-+..- .-.-+|..+.||.||+|+|||-||++||..+. ..++.+++|+|.++
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL---~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGL---GDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVS 567 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCC---CCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHH
Confidence 469999999998888776532110 00112234677899999999999999999996 89999999999875
Q ss_pred --------hhhhhhhhHHHHHHHH-HhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHh---hc--CCcccC
Q 043051 379 --------FVGVAASRVKDLFASA-RSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTE---MD--GFKVST 444 (845)
Q Consensus 379 --------~vG~~~~~vr~lF~~A-~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~e---md--g~~~~~ 444 (845)
|||..+ -..+..| +++..|||++|||+.- |....+.|+|+|+. -| |-..+-
T Consensus 568 rLIGaPPGYVGyee---GG~LTEaVRr~PySViLlDEIEKA------------HpdV~nilLQVlDdGrLTD~~Gr~VdF 632 (786)
T COG0542 568 RLIGAPPGYVGYEE---GGQLTEAVRRKPYSVILLDEIEKA------------HPDVFNLLLQVLDDGRLTDGQGRTVDF 632 (786)
T ss_pred HHhCCCCCCceecc---ccchhHhhhcCCCeEEEechhhhc------------CHHHHHHHHHHhcCCeeecCCCCEEec
Confidence 344333 2334444 4544589999999986 67788889998876 11 222233
Q ss_pred CcEEEEEEcCCCC----------------------------CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcc
Q 043051 445 SQVLVIGATNRLD----------------------------ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYF 496 (845)
Q Consensus 445 ~~ViVIaaTN~pd----------------------------~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l 496 (845)
.+.++|.|||--. ...|+++. |+|.+|.|.+.+.+...+|+...+....-
T Consensus 633 rNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~l~~ 710 (786)
T COG0542 633 RNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNRLAK 710 (786)
T ss_pred ceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHHHHH
Confidence 4689999998410 03677776 99999999999999999999877754321
Q ss_pred cch------hhhhhHHHHHHHHcc--CCcHHHHHHHHHH
Q 043051 497 RSE------EEKDVLLQEIAELTE--DFTGAELQNILNE 527 (845)
Q Consensus 497 ~~~------~~~d~dl~~LA~~t~--GfSgaDL~~Lvne 527 (845)
... ...+...+.|+.... .|.++-|++++..
T Consensus 711 ~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~ 749 (786)
T COG0542 711 RLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQ 749 (786)
T ss_pred HHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHH
Confidence 110 112344555665432 4455566655543
No 172
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.26 E-value=4e-11 Score=144.17 Aligned_cols=217 Identities=24% Similarity=0.292 Sum_probs=138.1
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHH-
Q 043051 302 GVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVE- 377 (845)
Q Consensus 302 ~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~- 377 (845)
..+|++++|.+...+.+.+.+..+.. ...+|||+|++||||+++|++|.... +.||+.++|+.+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAK----------SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 45799999999888877766655432 23569999999999999999998765 57999999986532
Q ss_pred ----hhhhhh----hhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc-----CCcccC
Q 043051 378 ----MFVGVA----ASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD-----GFKVST 444 (845)
Q Consensus 378 ----~~vG~~----~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd-----g~~~~~ 444 (845)
.+.|.. .......|+.| ..++||||||+.+ +...+..|+++|++-. +-...+
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l------------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~ 455 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYL------------SPELQSALLQVLKTGVITRLDSRRLIP 455 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhC------------CHHHHHHHHHHHhcCcEEeCCCCceEE
Confidence 233311 11111234333 3589999999999 5677888888886521 111111
Q ss_pred CcEEEEEEcCCCCCCChhhhccCcccE-------EEEeCCCCHhHHHHHHH----HHHhhhc----ccchhhhhhHHHHH
Q 043051 445 SQVLVIGATNRLDILDPALLRKGRFDK-------IVRVGLPSKDGRFAILK----VHARNKY----FRSEEEKDVLLQEI 509 (845)
Q Consensus 445 ~~ViVIaaTN~pd~LDpALlRpgRFdr-------~I~v~~Pd~eeR~eIL~----~~l~~~~----l~~~~~~d~dl~~L 509 (845)
-++.+|+|||..- ..+...|+|.. .+.+..|+..+|.+.+. .++.... ... ...+..++.|
T Consensus 456 ~~~riI~~t~~~l---~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~-~~s~~a~~~L 531 (638)
T PRK11388 456 VDVRVIATTTADL---AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRL-KIDDDALARL 531 (638)
T ss_pred eeEEEEEeccCCH---HHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCC-CcCHHHHHHH
Confidence 2478999998653 23333344422 67888999999865443 3332211 111 1234455666
Q ss_pred HHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 043051 510 AELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALK 550 (845)
Q Consensus 510 A~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~ 550 (845)
....-.-+-++|.+++..|...+ ....|+.+|+...+.
T Consensus 532 ~~y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~~~ 569 (638)
T PRK11388 532 VSYRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEHLF 569 (638)
T ss_pred HcCCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchhhh
Confidence 65542225679999998887543 345688888766553
No 173
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.26 E-value=2.3e-11 Score=137.18 Aligned_cols=204 Identities=25% Similarity=0.307 Sum_probs=139.0
Q ss_pred CCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHH
Q 043051 301 TGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVE 377 (845)
Q Consensus 301 ~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~ 377 (845)
....+.+++|...+..++.+.++.....+ -.|||.|.+||||.++||+|-+.+ +.||+.+||+.+.+
T Consensus 218 ~~~~~~~iIG~S~am~~ll~~i~~VA~Sd----------~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 218 VVLEVGGIIGRSPAMRQLLKEIEVVAKSD----------STVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hhcccccceecCHHHHHHHHHHHHHhcCC----------CeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 46789999999999999999888765443 579999999999999999997765 68999999987754
Q ss_pred hh-----hhhhh-------hhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhh-----cCC
Q 043051 378 MF-----VGVAA-------SRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEM-----DGF 440 (845)
Q Consensus 378 ~~-----vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~em-----dg~ 440 (845)
.. .|.-. ..-+.-|+.|. .+.||+|||..| +-..+..|+..|++- .|-
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAd---GGTLFLDEIGel------------PL~lQaKLLRvLQegEieRvG~~ 352 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELAD---GGTLFLDEIGEL------------PLALQAKLLRVLQEGEIERVGGD 352 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecC---CCeEechhhccC------------CHHHHHHHHHHHhhcceeecCCC
Confidence 32 22110 11123344443 379999999888 567889999999882 222
Q ss_pred cccCCcEEEEEEcCCCCCCChhhhccCcccE-------EEEeCCCCHhHHHHHHHHHHhh--------hcccchhhhhhH
Q 043051 441 KVSTSQVLVIGATNRLDILDPALLRKGRFDK-------IVRVGLPSKDGRFAILKVHARN--------KYFRSEEEKDVL 505 (845)
Q Consensus 441 ~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr-------~I~v~~Pd~eeR~eIL~~~l~~--------~~l~~~~~~d~d 505 (845)
..-.-.|.||||||+.- ....+.|+|.. ++.+..|...+|.+.+...++. .+......+...
T Consensus 353 r~ikVDVRiIAATNRDL---~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~A 429 (550)
T COG3604 353 RTIKVDVRVIAATNRDL---EEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEA 429 (550)
T ss_pred ceeEEEEEEEeccchhH---HHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHH
Confidence 22223599999999754 33445566642 6778899999997755433321 122111122334
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHH
Q 043051 506 LQEIAELTEDFTGAELQNILNEAGILT 532 (845)
Q Consensus 506 l~~LA~~t~GfSgaDL~~LvneAal~A 532 (845)
++.+....---+-++|+|+++.|++.|
T Consensus 430 l~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 430 LELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 555554332225679999999999988
No 174
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.25 E-value=1.6e-10 Score=140.16 Aligned_cols=203 Identities=22% Similarity=0.293 Sum_probs=129.7
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHH-
Q 043051 302 GVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVE- 377 (845)
Q Consensus 302 ~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~- 377 (845)
+.+|++++|.+...+.+.+.+..+.. ...+|||+|++|||||++|++|...+ +.||+.++|..+..
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~----------~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQ----------SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 46799999999998888877765432 23579999999999999999997754 67999999986532
Q ss_pred ----hhhhhh-------hhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc-----CCc
Q 043051 378 ----MFVGVA-------ASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD-----GFK 441 (845)
Q Consensus 378 ----~~vG~~-------~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd-----g~~ 441 (845)
...|.. .......|+.|. .++||||||+.+ +...+..|..+|.+-. +-.
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L------------~~~~Q~~L~~~l~~~~~~~~g~~~ 506 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDM------------PLELQPKLLRVLQEQEFERLGSNK 506 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhcC---CCeEEEechhhC------------CHHHHHHHHHHHHhCCEEeCCCCC
Confidence 122211 011223455443 489999999999 4567888888887621 111
Q ss_pred ccCCcEEEEEEcCCCCCCChhhhccCcccE-------EEEeCCCCHhHHHHHHHHHHh----hh----cccchhhhhhHH
Q 043051 442 VSTSQVLVIGATNRLDILDPALLRKGRFDK-------IVRVGLPSKDGRFAILKVHAR----NK----YFRSEEEKDVLL 506 (845)
Q Consensus 442 ~~~~~ViVIaaTN~pd~LDpALlRpgRFdr-------~I~v~~Pd~eeR~eIL~~~l~----~~----~l~~~~~~d~dl 506 (845)
....++.+|++|+..- ..+...++|.. .+.+..|+..+|.+.+..+++ +. +......+...+
T Consensus 507 ~~~~~~RiI~~t~~~l---~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al 583 (686)
T PRK15429 507 IIQTDVRLIAATNRDL---KKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETL 583 (686)
T ss_pred cccceEEEEEeCCCCH---HHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 1224588999998653 22222233332 578899999999875543332 21 111111233445
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHHHH
Q 043051 507 QEIAELTEDFTGAELQNILNEAGILT 532 (845)
Q Consensus 507 ~~LA~~t~GfSgaDL~~LvneAal~A 532 (845)
+.|....---+-++|++++..|++.+
T Consensus 584 ~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 584 RTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 55554432225569999998887654
No 175
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=2.2e-10 Score=137.01 Aligned_cols=207 Identities=26% Similarity=0.332 Sum_probs=146.8
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeEE
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA----------GVPFFA 369 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el----------g~pfi~ 369 (845)
.+.-.++-|+|.++.++.+.+++.. .. ..+-+|+|+||+|||.++..+|... +..++.
T Consensus 164 Ar~gklDPvIGRd~EI~r~iqIL~R---R~---------KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s 231 (786)
T COG0542 164 AREGKLDPVIGRDEEIRRTIQILSR---RT---------KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS 231 (786)
T ss_pred HhcCCCCCCcChHHHHHHHHHHHhc---cC---------CCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE
Confidence 4566789999999666655554432 21 2356899999999999999999875 456788
Q ss_pred eechhHH--HhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcE
Q 043051 370 ANGTDFV--EMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQV 447 (845)
Q Consensus 370 vs~sdf~--~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~V 447 (845)
++.+.++ .+|.|.-+.+++.+.+...+..+.||||||||.+.+.-+.. |+.-+..+.|-..|. .+.+
T Consensus 232 LD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~---G~a~DAaNiLKPaLA--------RGeL 300 (786)
T COG0542 232 LDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATE---GGAMDAANLLKPALA--------RGEL 300 (786)
T ss_pred ecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccc---ccccchhhhhHHHHh--------cCCe
Confidence 8888776 47899999999999999998888999999999996543211 112333444444443 3558
Q ss_pred EEEEEcCCCCC-----CChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhh----cccchhhhhhHHHHHHHHc-----
Q 043051 448 LVIGATNRLDI-----LDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNK----YFRSEEEKDVLLQEIAELT----- 513 (845)
Q Consensus 448 iVIaaTN~pd~-----LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~----~l~~~~~~d~dl~~LA~~t----- 513 (845)
-+|+||+..+. =|+||-| ||. .|.+.-|+.++-..||+-.-..+ ++.. .|..+...+.++
T Consensus 301 ~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i---~D~Al~aAv~LS~RYI~ 374 (786)
T COG0542 301 RCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRI---TDEALVAAVTLSDRYIP 374 (786)
T ss_pred EEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCcee---cHHHHHHHHHHHHhhcc
Confidence 99999965442 3999999 997 68999999999999998654332 2222 344455555443
Q ss_pred cCCcHHHHHHHHHHHHHHHHHc
Q 043051 514 EDFTGAELQNILNEAGILTARK 535 (845)
Q Consensus 514 ~GfSgaDL~~LvneAal~A~r~ 535 (845)
.-|-+.....++.+|+......
T Consensus 375 dR~LPDKAIDLiDeA~a~~~l~ 396 (786)
T COG0542 375 DRFLPDKAIDLLDEAGARVRLE 396 (786)
T ss_pred cCCCCchHHHHHHHHHHHHHhc
Confidence 3345557778888887665443
No 176
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.23 E-value=3.5e-10 Score=129.61 Aligned_cols=217 Identities=18% Similarity=0.140 Sum_probs=128.3
Q ss_pred cccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC--CeEEeechh-HHHhhhhhh
Q 043051 307 DFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGV--PFFAANGTD-FVEMFVGVA 383 (845)
Q Consensus 307 dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~--pfi~vs~sd-f~~~~vG~~ 383 (845)
.|+|.+++.+.+...+. ...+|||+||||||||++|++++..++. +|....+.- ..+...|..
T Consensus 21 ~i~gre~vI~lll~aal--------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred hccCcHHHHHHHHHHHc--------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 57788877775544331 1347999999999999999999987643 565554431 112222311
Q ss_pred -hhhH--HHHHHHHHhc---CCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc----CCcccCCcEEEEEEc
Q 043051 384 -ASRV--KDLFASARSF---APSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD----GFKVSTSQVLVIGAT 453 (845)
Q Consensus 384 -~~~v--r~lF~~A~~~---aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd----g~~~~~~~ViVIaaT 453 (845)
.... ..-|...... ...+||+|||..+ +...+..|+..+.+-. +-...-..-++++||
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra------------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~AT 154 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA------------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTAS 154 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccC------------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEEC
Confidence 0111 1122211110 2248999999876 4567788888886621 211111223445555
Q ss_pred CCCC---CCChhhhccCcccEEEEeCCCC-HhHHHHHHHHHHhh--hcc------cchh------------hhhhHH---
Q 043051 454 NRLD---ILDPALLRKGRFDKIVRVGLPS-KDGRFAILKVHARN--KYF------RSEE------------EKDVLL--- 506 (845)
Q Consensus 454 N~pd---~LDpALlRpgRFdr~I~v~~Pd-~eeR~eIL~~~l~~--~~l------~~~~------------~~d~dl--- 506 (845)
|... ...+++.. ||-..+.+++|+ .++..++|...... ... ...+ .++...
T Consensus 155 N~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI 232 (498)
T PRK13531 155 NELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELI 232 (498)
T ss_pred CCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHH
Confidence 7432 23358988 997788999886 45667787653211 100 0000 001112
Q ss_pred HHHHHH---c---cCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 507 QEIAEL---T---EDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 507 ~~LA~~---t---~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
-.|... + ...|++-...+++-|...|.-.|++.|+.+|+. .+..+
T Consensus 233 ~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~v 283 (498)
T PRK13531 233 FQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDC 283 (498)
T ss_pred HHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHH
Confidence 233321 2 237888888999999999999999999999999 55555
No 177
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.22 E-value=4.4e-10 Score=124.68 Aligned_cols=137 Identities=34% Similarity=0.454 Sum_probs=92.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHh--hhhhhhhhHH----HHHHHHHh--cCC--cEEEEcccch
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM--FVGVAASRVK----DLFASARS--FAP--SIIFIDEIDA 409 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~--~vG~~~~~vr----~lF~~A~~--~aP--~ILfIDEIDa 409 (845)
+++||.||||||||++|+++|..++.+|+.++|...... ..|...-..+ ..|..... ... +|+|+|||+.
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInr 123 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINR 123 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecccc
Confidence 479999999999999999999999999999999865432 2221111110 00000000 001 4999999998
Q ss_pred hccCCCCCCCCCCchHHHHHHHHHHHhhc----CCc--ccCCcEEEEEEcC-----CCCCCChhhhccCcccEEEEeCCC
Q 043051 410 IGSKRGGPDIGGGGAEREQGLLQILTEMD----GFK--VSTSQVLVIGATN-----RLDILDPALLRKGRFDKIVRVGLP 478 (845)
Q Consensus 410 L~~~R~~~~~~~~~~e~~~~L~qLL~emd----g~~--~~~~~ViVIaaTN-----~pd~LDpALlRpgRFdr~I~v~~P 478 (845)
. +...++.|++.+.+.. +.. .-+..++||+|+| ....|++|+++ ||-..+.++.|
T Consensus 124 a------------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp 189 (329)
T COG0714 124 A------------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYP 189 (329)
T ss_pred C------------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCC
Confidence 7 4577888888888822 211 1124489999999 44558999999 99888999999
Q ss_pred CHhHHHHHHHHH
Q 043051 479 SKDGRFAILKVH 490 (845)
Q Consensus 479 d~eeR~eIL~~~ 490 (845)
+.++-..++..+
T Consensus 190 ~~~~e~~~i~~~ 201 (329)
T COG0714 190 DSEEEERIILAR 201 (329)
T ss_pred CchHHHHHHHHh
Confidence 554444444333
No 178
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.21 E-value=2.4e-11 Score=125.29 Aligned_cols=147 Identities=30% Similarity=0.405 Sum_probs=70.6
Q ss_pred CcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC-------------------
Q 043051 304 TFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAG------------------- 364 (845)
Q Consensus 304 tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg------------------- 364 (845)
+|+||+|++.+|+.|.-... | ..++||+||||||||++|+++..-+-
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 59999999999998865542 2 35899999999999999999987541
Q ss_pred ---------CCeEEeechhHHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHH
Q 043051 365 ---------VPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILT 435 (845)
Q Consensus 365 ---------~pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~ 435 (845)
.||.....+.-....+|.+..-.-..+..|. .+|||+||+-.+ +....+.|.+-++
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh---~GVLflDE~~ef------------~~~vld~Lr~ple 131 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAH---RGVLFLDELNEF------------DRSVLDALRQPLE 131 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGT---TSEEEECETTTS-------------HHHHHHHHHHHH
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhc---CCEEEechhhhc------------CHHHHHHHHHHHH
Confidence 2343333322222233433322223333443 379999999888 3445556666665
Q ss_pred hhc------C-CcccCCcEEEEEEcCCC-----------------------CCCChhhhccCcccEEEEeCCCCHh
Q 043051 436 EMD------G-FKVSTSQVLVIGATNRL-----------------------DILDPALLRKGRFDKIVRVGLPSKD 481 (845)
Q Consensus 436 emd------g-~~~~~~~ViVIaaTN~p-----------------------d~LDpALlRpgRFdr~I~v~~Pd~e 481 (845)
+-. + ...-+.++++|+|+|.- ..|...|+. |||-++.++..+.+
T Consensus 132 ~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 132 DGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSYE 205 (206)
T ss_dssp HSBEEEEETTEEEEEB--EEEEEEE-S-------------------------------------------------
T ss_pred CCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--cccccccccccccC
Confidence 410 0 01123458999999852 114556666 77777666655443
No 179
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.21 E-value=3e-10 Score=125.33 Aligned_cols=183 Identities=15% Similarity=0.200 Sum_probs=125.4
Q ss_pred CcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCe----------EEeech
Q 043051 304 TFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPF----------FAANGT 373 (845)
Q Consensus 304 tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pf----------i~vs~s 373 (845)
.|++|+|++.+++.|...+..- +.|..+||+||+|+||+++|.++|+.+-+.- ...+.+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~-----------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN-----------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 5899999999999988877532 3467899999999999999999998763221 011111
Q ss_pred hHH---------H-----h---hhh--------hhhhhHHHHHHHHHh----cCCcEEEEcccchhccCCCCCCCCCCch
Q 043051 374 DFV---------E-----M---FVG--------VAASRVKDLFASARS----FAPSIIFIDEIDAIGSKRGGPDIGGGGA 424 (845)
Q Consensus 374 df~---------~-----~---~vG--------~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~R~~~~~~~~~~ 424 (845)
|+. . . ..| .....+|++.+.+.. ....|++||++|.+ +.
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m------------~~ 138 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM------------NE 138 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc------------CH
Confidence 111 0 0 001 122456777665533 22469999999998 45
Q ss_pred HHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhh
Q 043051 425 EREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDV 504 (845)
Q Consensus 425 e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~ 504 (845)
...+.|+..|++. + +.++|..|+.++.|-|.++++| ..+.|++|+.++..++|........ .+.
T Consensus 139 ~aaNaLLK~LEEP------p-~~~fILi~~~~~~Ll~TI~SRc---q~i~f~~l~~~~~~~~L~~~~~~~~------~~~ 202 (314)
T PRK07399 139 AAANALLKTLEEP------G-NGTLILIAPSPESLLPTIVSRC---QIIPFYRLSDEQLEQVLKRLGDEEI------LNI 202 (314)
T ss_pred HHHHHHHHHHhCC------C-CCeEEEEECChHhCcHHHHhhc---eEEecCCCCHHHHHHHHHHhhcccc------chh
Confidence 6677788887772 3 3567777888999999999966 6899999999999999886543211 122
Q ss_pred HHHHHHHHccCCcHHHHHHHHH
Q 043051 505 LLQEIAELTEDFTGAELQNILN 526 (845)
Q Consensus 505 dl~~LA~~t~GfSgaDL~~Lvn 526 (845)
+...++....| +++...++++
T Consensus 203 ~~~~l~~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 203 NFPELLALAQG-SPGAAIANIE 223 (314)
T ss_pred HHHHHHHHcCC-CHHHHHHHHH
Confidence 35677777777 5655555544
No 180
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.20 E-value=8.3e-12 Score=120.60 Aligned_cols=114 Identities=34% Similarity=0.468 Sum_probs=75.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH--hhhhhhh------hhHHHHHHHHHhcCCcEEEEcccchhcc
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE--MFVGVAA------SRVKDLFASARSFAPSIIFIDEIDAIGS 412 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~--~~vG~~~------~~vr~lF~~A~~~aP~ILfIDEIDaL~~ 412 (845)
+|||+||||||||+||+.+|..++.+++.++++...+ .+.|.-. ......+-.+.. .++|++||||+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccC--
Confidence 5899999999999999999999999999999876432 2222110 000111111111 4689999999987
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHhhc-----CCc-c-cCC------cEEEEEEcCCCC----CCChhhhccCcc
Q 043051 413 KRGGPDIGGGGAEREQGLLQILTEMD-----GFK-V-STS------QVLVIGATNRLD----ILDPALLRKGRF 469 (845)
Q Consensus 413 ~R~~~~~~~~~~e~~~~L~qLL~emd-----g~~-~-~~~------~ViVIaaTN~pd----~LDpALlRpgRF 469 (845)
+.+....|+.++.+-. +.. . ... ++.+|+|+|+.+ .++++|++ ||
T Consensus 78 ----------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 ----------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ----------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 4567777888877611 110 1 111 389999999998 89999999 87
No 181
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.19 E-value=1.3e-09 Score=116.60 Aligned_cols=193 Identities=14% Similarity=0.187 Sum_probs=121.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC-CeEE---e----echhHHHh---hhhhhh---------hhHHHHH-HHHHhcCC
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGV-PFFA---A----NGTDFVEM---FVGVAA---------SRVKDLF-ASARSFAP 399 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~-pfi~---v----s~sdf~~~---~vG~~~---------~~vr~lF-~~A~~~aP 399 (845)
.++|+||+|+|||++++.+++++.. .+.. + +..++... ..|... ..+...+ .......+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 5889999999999999999998752 2221 1 11122211 112111 1122222 22234567
Q ss_pred cEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCC---CC-C---hhhhccCcccEE
Q 043051 400 SIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLD---IL-D---PALLRKGRFDKI 472 (845)
Q Consensus 400 ~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd---~L-D---pALlRpgRFdr~ 472 (845)
.+|+|||+|.+. ......+..+ .+... .....+.|+.+. .++ .+ + ..+.+ |+...
T Consensus 125 ~vliiDe~~~l~------------~~~~~~l~~l-~~~~~--~~~~~~~vvl~g-~~~~~~~l~~~~~~~l~~--r~~~~ 186 (269)
T TIGR03015 125 ALLVVDEAQNLT------------PELLEELRML-SNFQT--DNAKLLQIFLVG-QPEFRETLQSPQLQQLRQ--RIIAS 186 (269)
T ss_pred eEEEEECcccCC------------HHHHHHHHHH-hCccc--CCCCeEEEEEcC-CHHHHHHHcCchhHHHHh--heeee
Confidence 899999999982 1222333322 22111 112223333333 322 12 1 23444 77778
Q ss_pred EEeCCCCHhHHHHHHHHHHhhhcccc-hhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Q 043051 473 VRVGLPSKDGRFAILKVHARNKYFRS-EEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKR 551 (845)
Q Consensus 473 I~v~~Pd~eeR~eIL~~~l~~~~l~~-~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r 551 (845)
+.+++.+.++..+++...+...+... ....+..++.|++.+.|. ++.+..+++.|...|..++.+.|+.+++.+++..
T Consensus 187 ~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~ 265 (269)
T TIGR03015 187 CHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLEEKREIGGEEVREVIAE 265 (269)
T ss_pred eeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 89999999999999998887544211 123457899999999996 5569999999999999999999999999999987
Q ss_pred c
Q 043051 552 Q 552 (845)
Q Consensus 552 ~ 552 (845)
.
T Consensus 266 ~ 266 (269)
T TIGR03015 266 I 266 (269)
T ss_pred h
Confidence 6
No 182
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.19 E-value=3.1e-10 Score=115.60 Aligned_cols=144 Identities=18% Similarity=0.245 Sum_probs=98.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCC------------------------eEEeechhHHHhhhhhhhhhHHHHHH
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIAGEAGVP------------------------FFAANGTDFVEMFVGVAASRVKDLFA 392 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA~elg~p------------------------fi~vs~sdf~~~~vG~~~~~vr~lF~ 392 (845)
+.|..+||+||+|+|||++|+++++.+... +..+.... ...+...++.+.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~-----~~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG-----QSIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc-----CcCCHHHHHHHHH
Confidence 457889999999999999999999987432 11111100 0123356666676
Q ss_pred HHHh----cCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCc
Q 043051 393 SARS----FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGR 468 (845)
Q Consensus 393 ~A~~----~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgR 468 (845)
.+.. ....||+|||+|.+. ....+.|+..+++ .+...++|.+||.+..|.+++.+++
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~------------~~~~~~Ll~~le~------~~~~~~~il~~~~~~~l~~~i~sr~- 147 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMN------------EAAANALLKTLEE------PPPNTLFILITPSPEKLLPTIRSRC- 147 (188)
T ss_pred HHccCcccCCeEEEEEechhhhC------------HHHHHHHHHHhcC------CCCCeEEEEEECChHhChHHHHhhc-
Confidence 6644 234699999999982 3344455555544 2334667777777899999999944
Q ss_pred ccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccC
Q 043051 469 FDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTED 515 (845)
Q Consensus 469 Fdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~G 515 (845)
..+.+.+|+.++..+++... ++ .+..+..++..+.|
T Consensus 148 --~~~~~~~~~~~~~~~~l~~~----gi-----~~~~~~~i~~~~~g 183 (188)
T TIGR00678 148 --QVLPFPPLSEEALLQWLIRQ----GI-----SEEAAELLLALAGG 183 (188)
T ss_pred --EEeeCCCCCHHHHHHHHHHc----CC-----CHHHHHHHHHHcCC
Confidence 48999999999998888765 22 24557777777766
No 183
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.19 E-value=6.2e-10 Score=129.31 Aligned_cols=218 Identities=22% Similarity=0.273 Sum_probs=134.9
Q ss_pred CCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC------------------
Q 043051 303 VTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAG------------------ 364 (845)
Q Consensus 303 ~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg------------------ 364 (845)
.+|.++.|+..+++.+.-. +.....++|+||||||||++++.+++.+.
T Consensus 188 ~d~~~v~Gq~~~~~al~la--------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEIT--------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhhee--------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 4899999998777654321 12245799999999999999999987542
Q ss_pred ----------CCeEEeechhHHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHH
Q 043051 365 ----------VPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQIL 434 (845)
Q Consensus 365 ----------~pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL 434 (845)
.||.....+--....+|.+..--...+..|.. ++|||||++.+ +...+..|.+.|
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~------------~~~~~~~L~~~L 318 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEF------------ERRTLDALREPI 318 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhC------------CHHHHHHHHHHH
Confidence 12221111110111233332222345666644 79999999887 345667777776
Q ss_pred Hhhc-------CCcccCCcEEEEEEcCCCC---------------------CCChhhhccCcccEEEEeCCCCHh-----
Q 043051 435 TEMD-------GFKVSTSQVLVIGATNRLD---------------------ILDPALLRKGRFDKIVRVGLPSKD----- 481 (845)
Q Consensus 435 ~emd-------g~~~~~~~ViVIaaTN~pd---------------------~LDpALlRpgRFdr~I~v~~Pd~e----- 481 (845)
++-. +....+.++.+|+|+|... .|..+++. |||.++.++.|+.+
T Consensus 319 E~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~~~ 396 (506)
T PRK09862 319 ESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILSKT 396 (506)
T ss_pred HcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHhcc
Confidence 5411 1111234689999999753 36778998 99999999988532
Q ss_pred -----HHHHHHHHHH-------hh-hccc--ch--------hhhhhHHH--HHHHHccCCcHHHHHHHHHHHHHHHHHcC
Q 043051 482 -----GRFAILKVHA-------RN-KYFR--SE--------EEKDVLLQ--EIAELTEDFTGAELQNILNEAGILTARKD 536 (845)
Q Consensus 482 -----eR~eIL~~~l-------~~-~~l~--~~--------~~~d~dl~--~LA~~t~GfSgaDL~~LvneAal~A~r~~ 536 (845)
...+|-+... .. ..+. .. ........ .-+....|.|.+....+++-|..+|..++
T Consensus 397 ~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g 476 (506)
T PRK09862 397 VVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQ 476 (506)
T ss_pred cCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC
Confidence 1222221110 00 0000 00 00001111 11223457899999999999999999999
Q ss_pred CCccCHHHHHHHHHh
Q 043051 537 LDYIGQEELLEALKR 551 (845)
Q Consensus 537 ~~~It~edl~~Al~r 551 (845)
.+.|+.+|+.+|+.-
T Consensus 477 ~~~V~~~hv~eAl~y 491 (506)
T PRK09862 477 SDIITRQHLQEAVSY 491 (506)
T ss_pred CCCCCHHHHHHHHHh
Confidence 999999999999864
No 184
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.19 E-value=2.2e-10 Score=127.15 Aligned_cols=201 Identities=23% Similarity=0.222 Sum_probs=126.1
Q ss_pred CcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHH---
Q 043051 304 TFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVE--- 377 (845)
Q Consensus 304 tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~--- 377 (845)
-|++++|.+...+.+.+.+..+.. .+.+|||+|++||||+++|+++.... +.||+.++|+.+.+
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~----------~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 377899999888888877766532 24579999999999999999997654 57999999987532
Q ss_pred --hhhhhhh-------hhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc-----CCccc
Q 043051 378 --MFVGVAA-------SRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD-----GFKVS 443 (845)
Q Consensus 378 --~~vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd-----g~~~~ 443 (845)
.+.|... ......|+.| ..++|||||||.+ +...+..|..++..-. +-...
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L------------~~~~Q~~L~~~l~~~~~~~~g~~~~~ 138 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATA------------PMLVQEKLLRVIEYGELERVGGSQPL 138 (326)
T ss_pred HHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhC------------CHHHHHHHHHHHhcCcEEeCCCCcee
Confidence 1222110 1112334444 3589999999999 4567788888886521 11111
Q ss_pred CCcEEEEEEcCCC-------CCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhh----h----cccc-hhhhhhHHH
Q 043051 444 TSQVLVIGATNRL-------DILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARN----K----YFRS-EEEKDVLLQ 507 (845)
Q Consensus 444 ~~~ViVIaaTN~p-------d~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~----~----~l~~-~~~~d~dl~ 507 (845)
..++.||++|+.. ..+.+.|.. ||. .+.+..|+..+|.+.+...+.. . +... .......+.
T Consensus 139 ~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~ 215 (326)
T PRK11608 139 QVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARE 215 (326)
T ss_pred eccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence 2348899998764 234556665 554 4678888888887654433321 1 1110 011233444
Q ss_pred HHHHHccCCcHHHHHHHHHHHHHHH
Q 043051 508 EIAELTEDFTGAELQNILNEAGILT 532 (845)
Q Consensus 508 ~LA~~t~GfSgaDL~~LvneAal~A 532 (845)
.|....---+-++|.++++.|+..+
T Consensus 216 ~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 216 TLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred HHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 4444332224458888888886543
No 185
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.18 E-value=1.3e-10 Score=117.22 Aligned_cols=135 Identities=30% Similarity=0.444 Sum_probs=90.5
Q ss_pred ccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHH-----hh
Q 043051 308 FAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVE-----MF 379 (845)
Q Consensus 308 VvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~-----~~ 379 (845)
++|.+...+.+.+.+..+.. .+.+|||+|++||||+++|++|-+.. +.||+.++|+.+.. ..
T Consensus 1 liG~s~~m~~~~~~~~~~a~----------~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----------SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----------STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhC----------CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 57878777777776655432 24689999999999999999998765 57999999987643 23
Q ss_pred hhhhh-------hhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhh-----cCCcccCCcE
Q 043051 380 VGVAA-------SRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEM-----DGFKVSTSQV 447 (845)
Q Consensus 380 vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~em-----dg~~~~~~~V 447 (845)
.|... ..-..+|+.|.. ++||||||+.| +...+..|+++|++- .+-....-++
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDL------------PPELQAKLLRVLEEGKFTRLGSDKPVPVDV 135 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS-------------HHHHHHHHHHHHHSEEECCTSSSEEE--E
T ss_pred hccccccccccccccCCceeeccc---eEEeecchhhh------------HHHHHHHHHHHHhhchhccccccccccccc
Confidence 34311 123478888866 89999999999 567889999999862 1211223369
Q ss_pred EEEEEcCCCCCCChhhhccCccc
Q 043051 448 LVIGATNRLDILDPALLRKGRFD 470 (845)
Q Consensus 448 iVIaaTN~pd~LDpALlRpgRFd 470 (845)
.||++|+.+- ..+...|+|.
T Consensus 136 RiI~st~~~l---~~~v~~g~fr 155 (168)
T PF00158_consen 136 RIIASTSKDL---EELVEQGRFR 155 (168)
T ss_dssp EEEEEESS-H---HHHHHTTSS-
T ss_pred eEEeecCcCH---HHHHHcCCCh
Confidence 9999998643 3455556764
No 186
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.18 E-value=2.3e-09 Score=111.62 Aligned_cols=200 Identities=21% Similarity=0.260 Sum_probs=138.8
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhH
Q 043051 299 ETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDF 375 (845)
Q Consensus 299 ~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf 375 (845)
...++.+.+++|.+.+++.|.+=...+- ...+..+|||||..|||||.|+||+-++. |..++.|+-.++
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~--------~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl 124 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFA--------EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL 124 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHH--------cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH
Confidence 3667999999999999998865333221 12345789999999999999999997766 678999998886
Q ss_pred HHhhhhhhhhhHHHHHHHHHhc-CCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcC
Q 043051 376 VEMFVGVAASRVKDLFASARSF-APSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATN 454 (845)
Q Consensus 376 ~~~~vG~~~~~vr~lF~~A~~~-aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN 454 (845)
.. +-.+++..+.. .+-|||.|++-- .. .+..-..|-..|+- |....+.+|+|.||+|
T Consensus 125 ~~---------Lp~l~~~Lr~~~~kFIlFcDDLSF----------e~-gd~~yK~LKs~LeG--~ve~rP~NVl~YATSN 182 (287)
T COG2607 125 AT---------LPDLVELLRARPEKFILFCDDLSF----------EE-GDDAYKALKSALEG--GVEGRPANVLFYATSN 182 (287)
T ss_pred hh---------HHHHHHHHhcCCceEEEEecCCCC----------CC-CchHHHHHHHHhcC--CcccCCCeEEEEEecC
Confidence 44 45566666543 246999998521 11 22233333333322 4555677899999999
Q ss_pred CCCCCChh--------------------hhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchh-hhhhHHHHHHHHc
Q 043051 455 RLDILDPA--------------------LLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEE-EKDVLLQEIAELT 513 (845)
Q Consensus 455 ~pd~LDpA--------------------LlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~-~~d~dl~~LA~~t 513 (845)
+-..|+.. +.-..||...+.|.+++.++...|+..++++.++.... .-.....+.|...
T Consensus 183 RRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~r 262 (287)
T COG2607 183 RRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTR 262 (287)
T ss_pred CcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 86665321 22235999999999999999999999999998887532 2233344555666
Q ss_pred cCCcHHHHHHHHHHH
Q 043051 514 EDFTGAELQNILNEA 528 (845)
Q Consensus 514 ~GfSgaDL~~LvneA 528 (845)
.|-||+-..+.++..
T Consensus 263 g~RSGR~A~QF~~~~ 277 (287)
T COG2607 263 GGRSGRVAWQFIRDL 277 (287)
T ss_pred CCCccHhHHHHHHHH
Confidence 677887666665543
No 187
>PRK04132 replication factor C small subunit; Provisional
Probab=99.18 E-value=4.4e-10 Score=136.71 Aligned_cols=174 Identities=24% Similarity=0.212 Sum_probs=130.6
Q ss_pred EEEEc--CCCChHHHHHHHHHHhc-----CCCeEEeechhHHHhhhhhhhhhHHHHHHHHHhcC------CcEEEEcccc
Q 043051 342 VLLHG--PPGTGKTLLAKAIAGEA-----GVPFFAANGTDFVEMFVGVAASRVKDLFASARSFA------PSIIFIDEID 408 (845)
Q Consensus 342 VLL~G--PPGTGKT~LArALA~el-----g~pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~a------P~ILfIDEID 408 (845)
-+..| |++.|||++|+++|+++ +.+++.+|+++.. +.+.+|++...+.... ..|++|||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r------gid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER------GINVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc------cHHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 45668 99999999999999998 5689999999842 2346677666544322 2599999999
Q ss_pred hhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHH
Q 043051 409 AIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILK 488 (845)
Q Consensus 409 aL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~ 488 (845)
.| +...++.|..++++ .++++.+|++||.+..+.++|+++| ..+.|++|+.++....|+
T Consensus 641 ~L------------t~~AQnALLk~lEe------p~~~~~FILi~N~~~kIi~tIrSRC---~~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 641 AL------------TQDAQQALRRTMEM------FSSNVRFILSCNYSSKIIEPIQSRC---AIFRFRPLRDEDIAKRLR 699 (846)
T ss_pred cC------------CHHHHHHHHHHhhC------CCCCeEEEEEeCChhhCchHHhhhc---eEEeCCCCCHHHHHHHHH
Confidence 99 34567777777766 3456899999999999999999955 689999999999999999
Q ss_pred HHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Q 043051 489 VHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKR 551 (845)
Q Consensus 489 ~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r 551 (845)
..+.+.++.. ++..+..++..+.| +.+...++++.++.. ...|+.+++......
T Consensus 700 ~I~~~Egi~i---~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~~~-----~~~It~~~V~~~~~~ 753 (846)
T PRK04132 700 YIAENEGLEL---TEEGLQAILYIAEG-DMRRAINILQAAAAL-----DDKITDENVFLVASR 753 (846)
T ss_pred HHHHhcCCCC---CHHHHHHHHHHcCC-CHHHHHHHHHHHHHh-----cCCCCHHHHHHHhCC
Confidence 8887665543 45678899999888 555555665544321 245888877765543
No 188
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.18 E-value=1.6e-09 Score=117.44 Aligned_cols=221 Identities=20% Similarity=0.285 Sum_probs=142.1
Q ss_pred ccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCeEEeech---
Q 043051 306 DDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---------GVPFFAANGT--- 373 (845)
Q Consensus 306 ~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---------g~pfi~vs~s--- 373 (845)
+..+|...+++.|..+-+.+..|..- -+.++||+|++|.|||++++.++... .+|++.+.+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~------Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p 107 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRH------RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEP 107 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCccc------CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCC
Confidence 35689999999999988888877632 24579999999999999999998643 2577777653
Q ss_pred ---hHHHhh---hh------hh-hhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCC
Q 043051 374 ---DFVEMF---VG------VA-ASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGF 440 (845)
Q Consensus 374 ---df~~~~---vG------~~-~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~ 440 (845)
.|.... .| .. ...-..+....+...+-+|+|||+|.+... +...+..++.+|..+..
T Consensus 108 ~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaG---------s~~~qr~~Ln~LK~L~N- 177 (302)
T PF05621_consen 108 DERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAG---------SYRKQREFLNALKFLGN- 177 (302)
T ss_pred ChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcc---------cHHHHHHHHHHHHHHhh-
Confidence 222111 01 01 111222334456667889999999998532 23345566666666521
Q ss_pred cccCCcEEEEEEcCCCC--CCChhhhccCcccEEEEeCCC-CHhHHHHHHHHHHhhhcccch--hhhhhHHHHHHHHccC
Q 043051 441 KVSTSQVLVIGATNRLD--ILDPALLRKGRFDKIVRVGLP-SKDGRFAILKVHARNKYFRSE--EEKDVLLQEIAELTED 515 (845)
Q Consensus 441 ~~~~~~ViVIaaTN~pd--~LDpALlRpgRFdr~I~v~~P-d~eeR~eIL~~~l~~~~l~~~--~~~d~dl~~LA~~t~G 515 (845)
.. .-.++.+++-.-.. .-|+.+.+ ||+. +.++.- .-++...++..+-...++... .........|-..+.|
T Consensus 178 eL-~ipiV~vGt~~A~~al~~D~QLa~--RF~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G 253 (302)
T PF05621_consen 178 EL-QIPIVGVGTREAYRALRTDPQLAS--RFEP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEG 253 (302)
T ss_pred cc-CCCeEEeccHHHHHHhccCHHHHh--ccCC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCC
Confidence 11 11244444332222 23888988 9974 455543 234455566555554444321 1123345677888999
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Q 043051 516 FTGAELQNILNEAGILTARKDLDYIGQEELLE 547 (845)
Q Consensus 516 fSgaDL~~LvneAal~A~r~~~~~It~edl~~ 547 (845)
..| ++.++++.||..|.+.|.+.||.+.+..
T Consensus 254 ~iG-~l~~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 254 LIG-ELSRLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred chH-HHHHHHHHHHHHHHhcCCceecHHHHhh
Confidence 666 8999999999999999999999998866
No 189
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.17 E-value=1.5e-10 Score=119.50 Aligned_cols=211 Identities=21% Similarity=0.285 Sum_probs=136.8
Q ss_pred ccccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-C----CCeE
Q 043051 294 FISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA-G----VPFF 368 (845)
Q Consensus 294 ~~~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el-g----~pfi 368 (845)
..|.+++++..+.|++|.++..+.|.-+...-.- .+++|.||||||||+-+.++|+++ | --+.
T Consensus 15 l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnm------------P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vL 82 (333)
T KOG0991|consen 15 LPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNM------------PNLIISGPPGTGKTTSILCLARELLGDSYKEAVL 82 (333)
T ss_pred chHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCC------------CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhh
Confidence 3477889999999999999998888766543221 259999999999999999999987 3 2456
Q ss_pred EeechhHHHhhhhhhhhhHHHHHHHHHhcC-C---cEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccC
Q 043051 369 AANGTDFVEMFVGVAASRVKDLFASARSFA-P---SIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVST 444 (845)
Q Consensus 369 ~vs~sdf~~~~vG~~~~~vr~lF~~A~~~a-P---~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~ 444 (845)
.+++|+-.. ..+-..++ ..|.+-+-.- | .||++||.|.+. .-.+++|-..++-- +
T Consensus 83 ELNASdeRG--IDvVRn~I-K~FAQ~kv~lp~grhKIiILDEADSMT------------~gAQQAlRRtMEiy------S 141 (333)
T KOG0991|consen 83 ELNASDERG--IDVVRNKI-KMFAQKKVTLPPGRHKIIILDEADSMT------------AGAQQALRRTMEIY------S 141 (333)
T ss_pred hccCccccc--cHHHHHHH-HHHHHhhccCCCCceeEEEeeccchhh------------hHHHHHHHHHHHHH------c
Confidence 777775321 11112222 2354443322 2 499999999982 34566666655442 2
Q ss_pred CcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHH
Q 043051 445 SQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNI 524 (845)
Q Consensus 445 ~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~L 524 (845)
+...+..++|..+.+-..+.++| -.+.+...+..+...-|....+...+.. .+.-++.+.-...| |+++.
T Consensus 142 ~ttRFalaCN~s~KIiEPIQSRC---AiLRysklsd~qiL~Rl~~v~k~Ekv~y---t~dgLeaiifta~G----DMRQa 211 (333)
T KOG0991|consen 142 NTTRFALACNQSEKIIEPIQSRC---AILRYSKLSDQQILKRLLEVAKAEKVNY---TDDGLEAIIFTAQG----DMRQA 211 (333)
T ss_pred ccchhhhhhcchhhhhhhHHhhh---HhhhhcccCHHHHHHHHHHHHHHhCCCC---CcchHHHhhhhccc----hHHHH
Confidence 23567778898888877788755 2455666666666555555555544443 34456666655555 88888
Q ss_pred HHHHHHHHHHcCCCccCHHHHHHHH
Q 043051 525 LNEAGILTARKDLDYIGQEELLEAL 549 (845)
Q Consensus 525 vneAal~A~r~~~~~It~edl~~Al 549 (845)
+|... +.-.+-..|+.+.+-...
T Consensus 212 lNnLQ--st~~g~g~Vn~enVfKv~ 234 (333)
T KOG0991|consen 212 LNNLQ--STVNGFGLVNQENVFKVC 234 (333)
T ss_pred HHHHH--HHhccccccchhhhhhcc
Confidence 87654 333455567776665544
No 190
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.16 E-value=3.3e-10 Score=105.68 Aligned_cols=123 Identities=35% Similarity=0.498 Sum_probs=82.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCC---eEEeechhHHHh--------------hhhhhhhhHHHHHHHHHhcCCcE
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVP---FFAANGTDFVEM--------------FVGVAASRVKDLFASARSFAPSI 401 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~p---fi~vs~sdf~~~--------------~vG~~~~~vr~lF~~A~~~aP~I 401 (845)
+..++|+||||||||++++.+|..+..+ ++.++++..... ........++.++..++...|++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4579999999999999999999999775 888887754321 11234566778888888877899
Q ss_pred EEEcccchhccCCCCCCCCCCchHHHHHHHH-----HHHhhcCCcccCCcEEEEEEcCC-CCCCChhhhccCcccEEEEe
Q 043051 402 IFIDEIDAIGSKRGGPDIGGGGAEREQGLLQ-----ILTEMDGFKVSTSQVLVIGATNR-LDILDPALLRKGRFDKIVRV 475 (845)
Q Consensus 402 LfIDEIDaL~~~R~~~~~~~~~~e~~~~L~q-----LL~emdg~~~~~~~ViVIaaTN~-pd~LDpALlRpgRFdr~I~v 475 (845)
|+|||++.+.... ....... ..... .......+|+++|. ....+..+.+ |++.++.+
T Consensus 82 iiiDei~~~~~~~-----------~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~ 144 (148)
T smart00382 82 LILDEITSLLDAE-----------QEALLLLLEELRLLLLL----KSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVL 144 (148)
T ss_pred EEEECCcccCCHH-----------HHHHHHhhhhhHHHHHH----HhcCCCEEEEEeCCCccCchhhhhh--ccceEEEe
Confidence 9999999985321 1111110 01111 12334788888886 3333444444 88888887
Q ss_pred CCC
Q 043051 476 GLP 478 (845)
Q Consensus 476 ~~P 478 (845)
..+
T Consensus 145 ~~~ 147 (148)
T smart00382 145 LLI 147 (148)
T ss_pred cCC
Confidence 655
No 191
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.15 E-value=1e-09 Score=130.64 Aligned_cols=194 Identities=22% Similarity=0.252 Sum_probs=129.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC--CCeEEeechhHHHhhhhhhhhhHHH------------HHHHHHhcCCcEEEEc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAG--VPFFAANGTDFVEMFVGVAASRVKD------------LFASARSFAPSIIFID 405 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg--~pfi~vs~sdf~~~~vG~~~~~vr~------------lF~~A~~~aP~ILfID 405 (845)
.+|||.|+||||||++|++++..+. .||+.+......+...|.. .+.. ++..| ..++||||
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A---~~GvL~lD 91 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEA---PRGVLYVD 91 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeC---CCCcEecc
Confidence 4899999999999999999999875 4798887643333333321 1111 11111 23699999
Q ss_pred ccchhccCCCCCCCCCCchHHHHHHHHHHHhhc------CCcc-cCCcEEEEEEcCCCC---CCChhhhccCcccEEEEe
Q 043051 406 EIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD------GFKV-STSQVLVIGATNRLD---ILDPALLRKGRFDKIVRV 475 (845)
Q Consensus 406 EIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd------g~~~-~~~~ViVIaaTN~pd---~LDpALlRpgRFdr~I~v 475 (845)
||+.+ +...+..|++.+.+-. |... .+.++.|||++|..+ .|.++|+. ||+.++.+
T Consensus 92 Ei~rl------------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~ 157 (589)
T TIGR02031 92 MANLL------------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSL 157 (589)
T ss_pred chhhC------------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeec
Confidence 99999 4567777888776521 2211 123589999999875 68999999 99988777
Q ss_pred C-CCCHhHHHHHHHHHHhhhcc--------------------cchhhhhhHHHHHHHHc--cCCc-HHHHHHHHHHHHHH
Q 043051 476 G-LPSKDGRFAILKVHARNKYF--------------------RSEEEKDVLLQEIAELT--EDFT-GAELQNILNEAGIL 531 (845)
Q Consensus 476 ~-~Pd~eeR~eIL~~~l~~~~l--------------------~~~~~~d~dl~~LA~~t--~GfS-gaDL~~LvneAal~ 531 (845)
. .|+.++|.+|++........ ..-..++..+..++..+ .|.+ .+....+++-|..+
T Consensus 158 ~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~ 237 (589)
T TIGR02031 158 EDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAH 237 (589)
T ss_pred CCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHH
Confidence 6 56788899999876522100 00001122333333322 2333 45566778888889
Q ss_pred HHHcCCCccCHHHHHHHHHhc
Q 043051 532 TARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 532 A~r~~~~~It~edl~~Al~r~ 552 (845)
|+-++++.|+.+|+..|+.-+
T Consensus 238 Aal~gr~~V~~~Dv~~a~~lv 258 (589)
T TIGR02031 238 AALHGRTEVTEEDLKLAVELV 258 (589)
T ss_pred HHHhCCCCCCHHHHHHHHHHH
Confidence 999999999999999998755
No 192
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=7.4e-10 Score=118.99 Aligned_cols=128 Identities=38% Similarity=0.535 Sum_probs=86.5
Q ss_pred cccccHHHHHHHHHHHHH----hhCcHHHhhcCCCC-CceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH-hhh
Q 043051 307 DFAGQEYIKRELQEIVRI----LKNDEEFQNKGIYC-PKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE-MFV 380 (845)
Q Consensus 307 dVvG~de~k~eL~eiv~~----Lk~p~~~~~~g~~~-PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~-~~v 380 (845)
=|+|++.+|+.|.-.|.- +.+.. .+-.... --++||.||.|||||+||+.+|+.+++||-..++..+.+ -|+
T Consensus 62 YVIGQe~AKKvLsVAVYNHYKRl~~~~--~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYV 139 (408)
T COG1219 62 YVIGQEQAKKVLSVAVYNHYKRLNNKE--DNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYV 139 (408)
T ss_pred heecchhhhceeeeeehhHHHHHhccC--CCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcccc
Confidence 378999999877543321 11111 0001111 247999999999999999999999999999999998876 488
Q ss_pred hhhhhhH-HHHHHHH----HhcCCcEEEEcccchhccCCCCCCC--CCCchHHHHHHHHHHHh
Q 043051 381 GVAASRV-KDLFASA----RSFAPSIIFIDEIDAIGSKRGGPDI--GGGGAEREQGLLQILTE 436 (845)
Q Consensus 381 G~~~~~v-r~lF~~A----~~~aP~ILfIDEIDaL~~~R~~~~~--~~~~~e~~~~L~qLL~e 436 (845)
|....++ ..++..| .+...+||||||||.++++....+. .-+..-.+|+|+.+++-
T Consensus 140 GEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEG 202 (408)
T COG1219 140 GEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEG 202 (408)
T ss_pred chhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcC
Confidence 8765544 3444443 1224589999999999987643221 12234567888887753
No 193
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.14 E-value=5.8e-10 Score=122.04 Aligned_cols=147 Identities=24% Similarity=0.316 Sum_probs=100.9
Q ss_pred ccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC---------------------
Q 043051 306 DDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAG--------------------- 364 (845)
Q Consensus 306 ~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg--------------------- 364 (845)
++++|.+++...+...+..-. +.|..+||+||||||||++|.++|+++.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESG----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CCcccchhHHHHHHHHHHhcC----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 357777777666655443211 3455799999999999999999999986
Q ss_pred ---CCeEEeechhHHHhhhhhhhhhHHHHHHHHHhc----CCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhh
Q 043051 365 ---VPFFAANGTDFVEMFVGVAASRVKDLFASARSF----APSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEM 437 (845)
Q Consensus 365 ---~pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~em 437 (845)
-.++.++.++-... ......++++-+..... ...||+|||+|.+ +....+.+...+++
T Consensus 71 ~~~~d~lel~~s~~~~~--~i~~~~vr~~~~~~~~~~~~~~~kviiidead~m------------t~~A~nallk~lEe- 135 (325)
T COG0470 71 GNHPDFLELNPSDLRKI--DIIVEQVRELAEFLSESPLEGGYKVVIIDEADKL------------TEDAANALLKTLEE- 135 (325)
T ss_pred cCCCceEEecccccCCC--cchHHHHHHHHHHhccCCCCCCceEEEeCcHHHH------------hHHHHHHHHHHhcc-
Confidence 36677777653321 12345566655554332 2469999999999 33455666666555
Q ss_pred cCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHH
Q 043051 438 DGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFA 485 (845)
Q Consensus 438 dg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~e 485 (845)
.+.+..+|.+||.+..+-+.+.++| ..+.|.+|+...+..
T Consensus 136 -----p~~~~~~il~~n~~~~il~tI~SRc---~~i~f~~~~~~~~i~ 175 (325)
T COG0470 136 -----PPKNTRFILITNDPSKILPTIRSRC---QRIRFKPPSRLEAIA 175 (325)
T ss_pred -----CCCCeEEEEEcCChhhccchhhhcc---eeeecCCchHHHHHH
Confidence 4556889999999999999999966 567887754444433
No 194
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.11 E-value=8.4e-10 Score=126.85 Aligned_cols=212 Identities=21% Similarity=0.217 Sum_probs=132.1
Q ss_pred CcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHhhh
Q 043051 304 TFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEMFV 380 (845)
Q Consensus 304 tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~~v 380 (845)
.|.+++|.....+.+.+.+..+.. ...+++|+|++||||+++|+++.... +.||+.++|+.+.+...
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAP----------SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 466788888777777665544322 23579999999999999999997765 57999999987643221
Q ss_pred -----hhh-------hhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhh-----cCCccc
Q 043051 381 -----GVA-------ASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEM-----DGFKVS 443 (845)
Q Consensus 381 -----G~~-------~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~em-----dg~~~~ 443 (845)
|.. .......|+.| ..++||||||+.+ +...+..|.++|.+- .+....
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l------------~~~~q~~l~~~l~~~~~~~~~~~~~~ 271 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDL------------PLNLQAKLLRFLQERVIERLGGREEI 271 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhC------------CHHHHHHHHHHHhhCeEEeCCCCcee
Confidence 110 01111223333 3589999999999 457788888888762 111112
Q ss_pred CCcEEEEEEcCCCC-------CCChhhhccCcccEEEEeCCCCHhHHHHHHHH----HHhhh----cccchhhhhhHHHH
Q 043051 444 TSQVLVIGATNRLD-------ILDPALLRKGRFDKIVRVGLPSKDGRFAILKV----HARNK----YFRSEEEKDVLLQE 508 (845)
Q Consensus 444 ~~~ViVIaaTN~pd-------~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~----~l~~~----~l~~~~~~d~dl~~ 508 (845)
+.++.+|++|+..- .+.+.|.. |+. .+.+..|+..+|.+.+.. ++... +..........+..
T Consensus 272 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 348 (445)
T TIGR02915 272 PVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRA 348 (445)
T ss_pred eeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 23588999997652 23444443 443 567888999999874433 22221 11111123445556
Q ss_pred HHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Q 043051 509 IAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELL 546 (845)
Q Consensus 509 LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~ 546 (845)
|....---+-++|++++..|+..+ ....|+.+++.
T Consensus 349 L~~~~wpgNvreL~~~i~~a~~~~---~~~~i~~~~l~ 383 (445)
T TIGR02915 349 LEAHAWPGNVRELENKVKRAVIMA---EGNQITAEDLG 383 (445)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHcC
Confidence 655542225679999999887654 33567777763
No 195
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.10 E-value=9.9e-10 Score=122.71 Aligned_cols=165 Identities=27% Similarity=0.455 Sum_probs=112.8
Q ss_pred CCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-------CCCeEEe---
Q 043051 301 TGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA-------GVPFFAA--- 370 (845)
Q Consensus 301 ~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el-------g~pfi~v--- 370 (845)
....|.-++|++..|..|--- .-+|. -.|+||.|+.|||||+++||||.-+ |+||-.=
T Consensus 12 ~~~pf~aivGqd~lk~aL~l~---av~P~---------iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 12 ENLPFTAIVGQDPLKLALGLN---AVDPQ---------IGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred hccchhhhcCchHHHHHHhhh---hcccc---------cceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 357799999999998876431 12232 3589999999999999999999866 3433211
Q ss_pred ---ech-------------------hHHHhhhhhhhhhHH------HHHH----------HHHhcCCcEEEEcccchhcc
Q 043051 371 ---NGT-------------------DFVEMFVGVAASRVK------DLFA----------SARSFAPSIIFIDEIDAIGS 412 (845)
Q Consensus 371 ---s~s-------------------df~~~~vG~~~~~vr------~lF~----------~A~~~aP~ILfIDEIDaL~~ 412 (845)
.|. .|++...|.++.++- ...+ .|+. ..+||+|||+..|
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~A-nRGIlYvDEvnlL-- 156 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARA-NRGILYVDEVNLL-- 156 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhc-cCCEEEEeccccc--
Confidence 011 122333444454331 1111 1111 2369999999998
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHh------hcCCcc-cCCcEEEEEEcCCCC-CCChhhhccCcccEEEEeCCC-CHhHH
Q 043051 413 KRGGPDIGGGGAEREQGLLQILTE------MDGFKV-STSQVLVIGATNRLD-ILDPALLRKGRFDKIVRVGLP-SKDGR 483 (845)
Q Consensus 413 ~R~~~~~~~~~~e~~~~L~qLL~e------mdg~~~-~~~~ViVIaaTN~pd-~LDpALlRpgRFdr~I~v~~P-d~eeR 483 (845)
.+..+..|++.+.+ .+|... .+.++++|+|.|+.. .|-|.|+. ||...+.+..| +.++|
T Consensus 157 ----------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~r 224 (423)
T COG1239 157 ----------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEER 224 (423)
T ss_pred ----------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHH
Confidence 45677778887776 344433 234699999999865 68899998 99999999876 88999
Q ss_pred HHHHHHHHh
Q 043051 484 FAILKVHAR 492 (845)
Q Consensus 484 ~eIL~~~l~ 492 (845)
.+|++..+.
T Consensus 225 v~Ii~r~~~ 233 (423)
T COG1239 225 VEIIRRRLA 233 (423)
T ss_pred HHHHHHHHH
Confidence 999987664
No 196
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.08 E-value=2.2e-09 Score=119.39 Aligned_cols=86 Identities=19% Similarity=0.233 Sum_probs=63.5
Q ss_pred CCCcc-cccccHHHHHHHHHHHHHhhCcHHHhhcCC-CCCceEEEEcCCCChHHHHHHHHHHhcCC-------CeEEeec
Q 043051 302 GVTFD-DFAGQEYIKRELQEIVRILKNDEEFQNKGI-YCPKGVLLHGPPGTGKTLLAKAIAGEAGV-------PFFAANG 372 (845)
Q Consensus 302 ~~tF~-dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~-~~PrgVLL~GPPGTGKT~LArALA~elg~-------pfi~vs~ 372 (845)
-.-|+ +++|++++++++.+ +++... .|. ...+.++|+||||||||+||++||+.++. |+|.+.+
T Consensus 46 y~~F~~~~~G~~~~i~~lv~---~l~~~a----~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 46 YRFFDHDFFGMEEAIERFVN---YFKSAA----QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccccchhccCcHHHHHHHHH---HHHHHH----hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 34577 99999988776554 444332 122 23477999999999999999999999976 9999998
Q ss_pred ----hhHHHhhhhhhhhhHHHHHHHH
Q 043051 373 ----TDFVEMFVGVAASRVKDLFASA 394 (845)
Q Consensus 373 ----sdf~~~~vG~~~~~vr~lF~~A 394 (845)
+.+.+..++.....+|..|...
T Consensus 119 ~~~~sp~~e~Pl~l~p~~~r~~~~~~ 144 (361)
T smart00763 119 NGEESPMHEDPLHLFPDELREDLEDE 144 (361)
T ss_pred cCCCCCCccCCcccCCHHHHHHHHHH
Confidence 7777777766666666665443
No 197
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.4e-09 Score=121.05 Aligned_cols=157 Identities=26% Similarity=0.383 Sum_probs=108.3
Q ss_pred HHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeec-hhHHHhhhhhhhhhHHHHHHHHHhc
Q 043051 319 QEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANG-TDFVEMFVGVAASRVKDLFASARSF 397 (845)
Q Consensus 319 ~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~-sdf~~~~vG~~~~~vr~lF~~A~~~ 397 (845)
..++..+++++++ +-.++||.||||+|||.||..+|..++.||+.+-. .+.+.+.-......++.+|+.|.+.
T Consensus 524 ~llv~qvk~s~~s------~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS 597 (744)
T KOG0741|consen 524 KLLVQQVKNSERS------PLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKS 597 (744)
T ss_pred HHHHHHhhccccC------cceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcC
Confidence 3455666666643 33689999999999999999999999999997654 3444333334456789999999997
Q ss_pred CCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCC-ChhhhccCcccEEEEeC
Q 043051 398 APSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDIL-DPALLRKGRFDKIVRVG 476 (845)
Q Consensus 398 aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~L-DpALlRpgRFdr~I~v~ 476 (845)
.-+||++|+|+.|.. -..-+.......|..|+.-+..-.....+.+|++||.+.+.| +-.++. -|+..+++|
T Consensus 598 ~lsiivvDdiErLiD-----~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vp 670 (744)
T KOG0741|consen 598 PLSIIVVDDIERLLD-----YVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVP 670 (744)
T ss_pred cceEEEEcchhhhhc-----ccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecC
Confidence 779999999999852 222334444444444555554444444578888888877655 233444 688888887
Q ss_pred CCCH-hHHHHHHH
Q 043051 477 LPSK-DGRFAILK 488 (845)
Q Consensus 477 ~Pd~-eeR~eIL~ 488 (845)
..+. ++..+++.
T Consensus 671 nl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 671 NLTTGEQLLEVLE 683 (744)
T ss_pred ccCchHHHHHHHH
Confidence 6654 55555554
No 198
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=2.6e-09 Score=118.53 Aligned_cols=157 Identities=18% Similarity=0.264 Sum_probs=108.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCC------------------------eEEeechhHHHhhhhhhhhhHHHHH
Q 043051 336 IYCPKGVLLHGPPGTGKTLLAKAIAGEAGVP------------------------FFAANGTDFVEMFVGVAASRVKDLF 391 (845)
Q Consensus 336 ~~~PrgVLL~GPPGTGKT~LArALA~elg~p------------------------fi~vs~sdf~~~~vG~~~~~vr~lF 391 (845)
.+.|.++||+||+|+|||++|+++|+.+.+. ++.+...+ .-...+.+.+|++.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~---~~~~i~id~iR~l~ 95 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE---ADKTIKVDQVRELV 95 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC---CCCCCCHHHHHHHH
Confidence 4568899999999999999999999987542 12221100 00012456788877
Q ss_pred HHHHh----cCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccC
Q 043051 392 ASARS----FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKG 467 (845)
Q Consensus 392 ~~A~~----~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpg 467 (845)
+.+.. ....|++||++|.+ +....+.|+..|+| +++++++|.+|+.++.|.|.+++++
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m------------~~~aaNaLLK~LEE------Pp~~~~fiL~t~~~~~ll~TI~SRc 157 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAM------------NRNAANALLKSLEE------PSGDTVLLLISHQPSRLLPTIKSRC 157 (328)
T ss_pred HHHhhccccCCCeEEEECChhhC------------CHHHHHHHHHHHhC------CCCCeEEEEEECChhhCcHHHHhhc
Confidence 76643 22458999999999 45667777777776 3456889999999999999999955
Q ss_pred cccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHH
Q 043051 468 RFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNI 524 (845)
Q Consensus 468 RFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~L 524 (845)
..+.|++|+.++..+.|...... . .+.....++....| ++.....+
T Consensus 158 ---~~~~~~~~~~~~~~~~L~~~~~~---~----~~~~~~~~l~la~G-sp~~A~~l 203 (328)
T PRK05707 158 ---QQQACPLPSNEESLQWLQQALPE---S----DERERIELLTLAGG-SPLRALQL 203 (328)
T ss_pred ---eeeeCCCcCHHHHHHHHHHhccc---C----ChHHHHHHHHHcCC-CHHHHHHH
Confidence 47999999999888888754311 1 23334566667776 44333333
No 199
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.05 E-value=5.1e-10 Score=113.15 Aligned_cols=115 Identities=30% Similarity=0.374 Sum_probs=73.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCC----CeEEeechhHHHhhhhhhhhhHHHHHHHH----HhcCCcEEEEcccchhc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAGV----PFFAANGTDFVEMFVGVAASRVKDLFASA----RSFAPSIIFIDEIDAIG 411 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg~----pfi~vs~sdf~~~~vG~~~~~vr~lF~~A----~~~aP~ILfIDEIDaL~ 411 (845)
..+||+||+|||||.+|+++|..+.. +++.++++++.+ .+.....+..++..+ ......||||||||...
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~--~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~ 81 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE--GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAH 81 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS--HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc--cchHHhhhhhhhhcccceeeccchhhhhhHHHhhcc
Confidence 46899999999999999999999997 999999999876 111122222222221 11112499999999996
Q ss_pred cCCCCCCCCCCchHHHHHHHHHHHhh-----cCCcccCCcEEEEEEcCCCC
Q 043051 412 SKRGGPDIGGGGAEREQGLLQILTEM-----DGFKVSTSQVLVIGATNRLD 457 (845)
Q Consensus 412 ~~R~~~~~~~~~~e~~~~L~qLL~em-----dg~~~~~~~ViVIaaTN~pd 457 (845)
...+ ..........++.|++++++- .+...+..++++|+|+|--.
T Consensus 82 ~~~~-~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 82 PSNS-GGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp HTTT-TCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cccc-ccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 5311 110011124567777777651 12223445799999999765
No 200
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.04 E-value=2.1e-09 Score=122.49 Aligned_cols=144 Identities=25% Similarity=0.387 Sum_probs=88.3
Q ss_pred cccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-------eEEee----ch
Q 043051 305 FDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVP-------FFAAN----GT 373 (845)
Q Consensus 305 F~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~p-------fi~vs----~s 373 (845)
++++.+.+...+.+.. .+.. .++++|+||||||||++|+++|..+... ++.++ ..
T Consensus 174 l~d~~i~e~~le~l~~---~L~~-----------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILK---RLTI-----------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHH---HHhc-----------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 6777777765555433 3321 3589999999999999999999987431 22222 22
Q ss_pred hHHHhh--hhhhhh----hHHHHHHHHHhc--CCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHh---------
Q 043051 374 DFVEMF--VGVAAS----RVKDLFASARSF--APSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTE--------- 436 (845)
Q Consensus 374 df~~~~--vG~~~~----~vr~lF~~A~~~--aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~e--------- 436 (845)
+|++.+ .+.+-. .+..++..|+.. .|++||||||++-...+ ....+.++|+.
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k-----------iFGel~~lLE~~~rg~~~~v 308 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK-----------VFGEVMMLMEHDKRGENWSV 308 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH-----------hhhhhhhhccccccccccce
Confidence 443322 111211 233455666543 47999999999863221 11222333321
Q ss_pred --------hcCCcccCCcEEEEEEcCCCC----CCChhhhccCcccEEEEeCC
Q 043051 437 --------MDGFKVSTSQVLVIGATNRLD----ILDPALLRKGRFDKIVRVGL 477 (845)
Q Consensus 437 --------mdg~~~~~~~ViVIaaTN~pd----~LDpALlRpgRFdr~I~v~~ 477 (845)
...|.. +.++.||||.|..+ .+|.||+| ||. .|.+.+
T Consensus 309 ~l~y~e~d~e~f~i-P~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 309 PLTYSENDEERFYV-PENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred eeeccccccccccC-CCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 112333 34599999999988 79999999 996 466654
No 201
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=8.4e-10 Score=124.79 Aligned_cols=215 Identities=25% Similarity=0.313 Sum_probs=126.7
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC-----------------
Q 043051 302 GVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAG----------------- 364 (845)
Q Consensus 302 ~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg----------------- 364 (845)
..+|.||+|++.+|+.|..... -.+++|++||||||||+||+.+.+-+-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA--------------GgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA--------------GGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh--------------cCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 4589999999999999876542 146899999999999999999866331
Q ss_pred ------------CCeEEeechhHHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHH
Q 043051 365 ------------VPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQ 432 (845)
Q Consensus 365 ------------~pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~q 432 (845)
.||..-..+.-....+|.+..---.-...| ..+||||||+-.+ ..+.|..
T Consensus 241 g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLA---H~GVLFLDElpef---------------~~~iLe~ 302 (490)
T COG0606 241 GDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLA---HNGVLFLDELPEF---------------KRSILEA 302 (490)
T ss_pred ccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeee---cCCEEEeeccchh---------------hHHHHHH
Confidence 122211111111122222210000111111 2379999998776 1245555
Q ss_pred HHHhhcCCc----------ccCCcEEEEEEcCCCC-----------------------CCChhhhccCcccEEEEeCCCC
Q 043051 433 ILTEMDGFK----------VSTSQVLVIGATNRLD-----------------------ILDPALLRKGRFDKIVRVGLPS 479 (845)
Q Consensus 433 LL~emdg~~----------~~~~~ViVIaaTN~pd-----------------------~LDpALlRpgRFdr~I~v~~Pd 479 (845)
|.+-|..-. .-+.++.+|+|+|..- .|...|++ |||..+.++.++
T Consensus 303 LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~ 380 (490)
T COG0606 303 LREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLS 380 (490)
T ss_pred HhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCC
Confidence 544443211 1223578899998622 14566777 999999998876
Q ss_pred HhHHH--------------HHHHH----HHhhhcc--cc------------hhhhhhHHHHHHHHccCCcHHHHHHHHHH
Q 043051 480 KDGRF--------------AILKV----HARNKYF--RS------------EEEKDVLLQEIAELTEDFTGAELQNILNE 527 (845)
Q Consensus 480 ~eeR~--------------eIL~~----~l~~~~l--~~------------~~~~d~dl~~LA~~t~GfSgaDL~~Lvne 527 (845)
..++. .+.+. ..+...+ .. -...+.++...+-..-++|.+....++.-
T Consensus 381 ~~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKv 460 (490)
T COG0606 381 AGELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKV 460 (490)
T ss_pred HHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 33221 11111 1111111 00 00112233333445567888888899998
Q ss_pred HHHHHHHcCCCccCHHHHHHHHH
Q 043051 528 AGILTARKDLDYIGQEELLEALK 550 (845)
Q Consensus 528 Aal~A~r~~~~~It~edl~~Al~ 550 (845)
|..+|...+.+.|...|+.+|+.
T Consensus 461 arTiADL~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 461 ARTIADLEGSEQIERSHLAEAIS 483 (490)
T ss_pred HhhhhcccCcchhhHHHHHHHHh
Confidence 88888888888899999998885
No 202
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=2e-09 Score=119.54 Aligned_cols=148 Identities=18% Similarity=0.209 Sum_probs=106.5
Q ss_pred Ccccccc-cHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC----------------
Q 043051 304 TFDDFAG-QEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVP---------------- 366 (845)
Q Consensus 304 tF~dVvG-~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~p---------------- 366 (845)
.|+.|+| ++.+++.|...+.. .+.|..+||+||+|+|||++|+++|+.+-++
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 4888999 88888888776632 2457789999999999999999999986432
Q ss_pred --------eEEeechhHHHhhhhhhhhhHHHHHHHHHh----cCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHH
Q 043051 367 --------FFAANGTDFVEMFVGVAASRVKDLFASARS----FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQIL 434 (845)
Q Consensus 367 --------fi~vs~sdf~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL 434 (845)
+..+... . ...+...+|++.+.+.. ....|++|||+|.+ +.+..+.|+..|
T Consensus 72 ~~~~~hpD~~~i~~~---~--~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~------------~~~a~NaLLK~L 134 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---G--QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM------------TASAANSLLKFL 134 (329)
T ss_pred HhcCCCCCEEEeccc---c--ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh------------CHHHHHHHHHHh
Confidence 1111110 0 01233567777665532 12359999999998 445666777776
Q ss_pred HhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHH
Q 043051 435 TEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILK 488 (845)
Q Consensus 435 ~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~ 488 (845)
++ ++..+++|.+|+.+..|.|+++++| .++.|..|+.++..+.|+
T Consensus 135 EE------Pp~~~~~Il~t~~~~~ll~TIrSRc---~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 135 EE------PSGGTTAILLTENKHQILPTILSRC---QVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred cC------CCCCceEEEEeCChHhCcHHHHhhc---eeeeCCCCCHHHHHHHHH
Confidence 66 3455778888888899999999966 589999999998877775
No 203
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=5.9e-09 Score=115.80 Aligned_cols=97 Identities=35% Similarity=0.543 Sum_probs=72.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH-hhhhhh-hhhHHHHHHHH----HhcCCcEEEEcccchhccC
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE-MFVGVA-ASRVKDLFASA----RSFAPSIIFIDEIDAIGSK 413 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~-~~vG~~-~~~vr~lF~~A----~~~aP~ILfIDEIDaL~~~ 413 (845)
-+|||.||+|+|||+||+.||+.+++||..++|..+.. -|+|.. +.-+..++..| .+...+||||||+|.|+.+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 37999999999999999999999999999999998864 477764 34455666655 2234689999999999855
Q ss_pred CCCCCC--CCCchHHHHHHHHHHHh
Q 043051 414 RGGPDI--GGGGAEREQGLLQILTE 436 (845)
Q Consensus 414 R~~~~~--~~~~~e~~~~L~qLL~e 436 (845)
..+... .-+..-.++.|+.||+-
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred CccccccccccchhHHHHHHHHhcc
Confidence 432111 12234578888888763
No 204
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.01 E-value=3.3e-09 Score=122.19 Aligned_cols=215 Identities=21% Similarity=0.281 Sum_probs=131.3
Q ss_pred CcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHhh-
Q 043051 304 TFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEMF- 379 (845)
Q Consensus 304 tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~~- 379 (845)
.+.+++|.......+.+.+..+... ..++|++|++||||+++|+++...+ +.||+.++|..+.+..
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~~----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIALS----------QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcCC----------CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 4567888877666665554443321 3479999999999999999997654 5799999998764321
Q ss_pred ----hhhhhh-------hHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc-----CCccc
Q 043051 380 ----VGVAAS-------RVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD-----GFKVS 443 (845)
Q Consensus 380 ----vG~~~~-------~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd-----g~~~~ 443 (845)
.|.... .-...|..| ..++|||||||.+ +...+..|.++|.+-. +....
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ld~i~~l------------~~~~q~~L~~~l~~~~~~~~~~~~~~ 275 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLLDEIGEM------------PLVLQAKLLRILQEREFERIGGHQTI 275 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEEechhhC------------CHHHHHHHHHHHhcCcEEeCCCCcee
Confidence 121100 011223333 3479999999999 4567788888887621 11111
Q ss_pred CCcEEEEEEcCCCCCCChhhhccCcccE-------EEEeCCCCHhHHHHHHHHH----Hhhhcc----cchhhhhhHHHH
Q 043051 444 TSQVLVIGATNRLDILDPALLRKGRFDK-------IVRVGLPSKDGRFAILKVH----ARNKYF----RSEEEKDVLLQE 508 (845)
Q Consensus 444 ~~~ViVIaaTN~pd~LDpALlRpgRFdr-------~I~v~~Pd~eeR~eIL~~~----l~~~~l----~~~~~~d~dl~~ 508 (845)
..++.+|++||..- ..+.+.|+|.. .+.+..|+..+|.+.+... +..... .........++.
T Consensus 276 ~~~~rii~~t~~~l---~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 352 (457)
T PRK11361 276 KVDIRIIAATNRDL---QAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSL 352 (457)
T ss_pred eeceEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHH
Confidence 23488999998643 23344444443 5778899999887654432 222111 101123344455
Q ss_pred HHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 043051 509 IAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEAL 549 (845)
Q Consensus 509 LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al 549 (845)
+....---+-++|.+++..|...+ ....|+.+|+...+
T Consensus 353 L~~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~~~~ 390 (457)
T PRK11361 353 LTAWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLPPQI 390 (457)
T ss_pred HHcCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHChHhh
Confidence 555442225679999998887543 34568888876544
No 205
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.01 E-value=5e-09 Score=121.35 Aligned_cols=215 Identities=21% Similarity=0.270 Sum_probs=133.9
Q ss_pred CcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHh--
Q 043051 304 TFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEM-- 378 (845)
Q Consensus 304 tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~-- 378 (845)
.|.+++|.....+.+.+.+..+.. ...+++|+|++|||||++|+++.... +.||+.++|+.+.+.
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSR----------SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhc----------cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 467899988877777766654332 23579999999999999999998875 579999999876332
Q ss_pred ---hhhhhhh-------hHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc-----CCccc
Q 043051 379 ---FVGVAAS-------RVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD-----GFKVS 443 (845)
Q Consensus 379 ---~vG~~~~-------~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd-----g~~~~ 443 (845)
..|.... .....|+.| ..+.|||||||.+ +...+..|.++|.+-. +....
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l------------~~~~q~~L~~~l~~~~~~~~~~~~~~ 270 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDM------------PLDVQTRLLRVLADGQFYRVGGYAPV 270 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccC------------CHHHHHHHHHHHhcCcEEeCCCCCeE
Confidence 1121100 001123332 3579999999999 4567788888887621 11111
Q ss_pred CCcEEEEEEcCCCC-------CCChhhhccCcccEEEEeCCCCHhHHHHHHHH----HHhhh----cccchhhhhhHHHH
Q 043051 444 TSQVLVIGATNRLD-------ILDPALLRKGRFDKIVRVGLPSKDGRFAILKV----HARNK----YFRSEEEKDVLLQE 508 (845)
Q Consensus 444 ~~~ViVIaaTN~pd-------~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~----~l~~~----~l~~~~~~d~dl~~ 508 (845)
..++.+|++|+..- .+.+.|.. ||. .+.+..|+..+|.+.+.. ++... +..........+..
T Consensus 271 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 347 (469)
T PRK10923 271 KVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAA 347 (469)
T ss_pred EeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHH
Confidence 23478999997642 24455555 553 577888888888765443 33221 11111123344555
Q ss_pred HHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 043051 509 IAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEAL 549 (845)
Q Consensus 509 LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al 549 (845)
|....---+-++|++++..|++.+ ....|+.+|+...+
T Consensus 348 L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~~~~ 385 (469)
T PRK10923 348 LTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLPGEL 385 (469)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCcHhh
Confidence 555433225569999999887654 34578888875444
No 206
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2.4e-09 Score=115.90 Aligned_cols=85 Identities=31% Similarity=0.427 Sum_probs=57.8
Q ss_pred CcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCc-------ccCCcEEEEEEc----CCCCCCChhhhccC
Q 043051 399 PSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFK-------VSTSQVLVIGAT----NRLDILDPALLRKG 467 (845)
Q Consensus 399 P~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~-------~~~~~ViVIaaT----N~pd~LDpALlRpg 467 (845)
-+||||||||.++.+.+.++.+-+..-.+..|+-++ .|-. ....++++||+. ..|..|-|.|. |
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlv---EGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--G 325 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLV---EGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--G 325 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccc---cCceeeccccccccceEEEEecCceecCChhhcChhhc--C
Confidence 469999999999876531111111122234444443 3322 134468999987 56888888885 5
Q ss_pred cccEEEEeCCCCHhHHHHHHH
Q 043051 468 RFDKIVRVGLPSKDGRFAILK 488 (845)
Q Consensus 468 RFdr~I~v~~Pd~eeR~eIL~ 488 (845)
||.-.+.+...+.++...||.
T Consensus 326 RfPIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 326 RFPIRVELDALTKEDFERILT 346 (444)
T ss_pred CCceEEEcccCCHHHHHHHHc
Confidence 999999999999999998885
No 207
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.99 E-value=9.6e-09 Score=124.82 Aligned_cols=162 Identities=19% Similarity=0.246 Sum_probs=95.1
Q ss_pred ccccccHHHHHHHHHHHHHhhCcHH---Hh--------hcCCCCCceEEEEcCCCChHHHHHHHHHHhcC-------CCe
Q 043051 306 DDFAGQEYIKRELQEIVRILKNDEE---FQ--------NKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAG-------VPF 367 (845)
Q Consensus 306 ~dVvG~de~k~eL~eiv~~Lk~p~~---~~--------~~g~~~PrgVLL~GPPGTGKT~LArALA~elg-------~pf 367 (845)
-.|.|++.+|+.+.- ..+....+ .. ....+-..+|||+|+||||||.+|+++++.+. .++
T Consensus 450 P~I~G~e~vK~ailL--~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~ 527 (915)
T PTZ00111 450 PSIKARNNVKIGLLC--QLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSS 527 (915)
T ss_pred CeEECCHHHHHHHHH--HHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCC
Confidence 357899988887732 22221111 00 01123345899999999999999999988542 455
Q ss_pred EEeechhHHHhhh-hhhhhhH-HHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc------C
Q 043051 368 FAANGTDFVEMFV-GVAASRV-KDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD------G 439 (845)
Q Consensus 368 i~vs~sdf~~~~v-G~~~~~v-r~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd------g 439 (845)
..+.+..+....- ..+.-.+ ...+..| ..++++|||+|.+ +...+..|.+++++-. |
T Consensus 528 s~vgLTa~~~~~d~~tG~~~le~GaLvlA---dgGtL~IDEidkm------------s~~~Q~aLlEaMEqqtIsI~KaG 592 (915)
T PTZ00111 528 SSVGLTASIKFNESDNGRAMIQPGAVVLA---NGGVCCIDELDKC------------HNESRLSLYEVMEQQTVTIAKAG 592 (915)
T ss_pred ccccccchhhhcccccCcccccCCcEEEc---CCCeEEecchhhC------------CHHHHHHHHHHHhCCEEEEecCC
Confidence 5554443321000 0000000 0111122 3479999999998 3456677777775511 1
Q ss_pred C-cccCCcEEEEEEcCCCC-------------CCChhhhccCcccEEEE-eCCCCHhHHHHH
Q 043051 440 F-KVSTSQVLVIGATNRLD-------------ILDPALLRKGRFDKIVR-VGLPSKDGRFAI 486 (845)
Q Consensus 440 ~-~~~~~~ViVIaaTN~pd-------------~LDpALlRpgRFdr~I~-v~~Pd~eeR~eI 486 (845)
. ..-+.++.||||+|+.. .|+++|++ |||.++. ++.|+.+.=..|
T Consensus 593 i~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~l 652 (915)
T PTZ00111 593 IVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLI 652 (915)
T ss_pred cceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHH
Confidence 1 11234689999999842 26899999 9998654 466666554444
No 208
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.99 E-value=1.4e-08 Score=108.21 Aligned_cols=129 Identities=17% Similarity=0.235 Sum_probs=94.3
Q ss_pred CcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCC------------CCCCChhhhcc
Q 043051 399 PSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNR------------LDILDPALLRK 466 (845)
Q Consensus 399 P~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~------------pd~LDpALlRp 466 (845)
|+||||||+|.| +-+....||..|+. .-. -++|.+||+ |..++-.|+.
T Consensus 289 pGVLFIDEvHML------------DIEcFsFlNrAlE~------d~~-PiiimaTNrgit~iRGTn~~SphGiP~D~lD- 348 (454)
T KOG2680|consen 289 PGVLFIDEVHML------------DIECFSFLNRALEN------DMA-PIIIMATNRGITRIRGTNYRSPHGIPIDLLD- 348 (454)
T ss_pred cceEEEeeehhh------------hhHHHHHHHHHhhh------ccC-cEEEEEcCCceEEeecCCCCCCCCCcHHHhh-
Confidence 889999999988 34566677776655 122 245556664 5567778887
Q ss_pred CcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Q 043051 467 GRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELL 546 (845)
Q Consensus 467 gRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~ 546 (845)
|. ..|...+++.++.++||+..+........ +..++.|......-|-+-..+|+..|.+.+.++....+..+|++
T Consensus 349 -R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~---~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~ 423 (454)
T KOG2680|consen 349 -RM-LIISTQPYTEEDIKKILRIRCQEEDVEMN---PDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIE 423 (454)
T ss_pred -hh-heeecccCcHHHHHHHHHhhhhhhccccC---HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHH
Confidence 43 36788899999999999999987766543 33455555554445667777899999999999999999999999
Q ss_pred HHHHhc
Q 043051 547 EALKRQ 552 (845)
Q Consensus 547 ~Al~r~ 552 (845)
.+..-.
T Consensus 424 r~y~LF 429 (454)
T KOG2680|consen 424 RVYRLF 429 (454)
T ss_pred HHHHHH
Confidence 887644
No 209
>PRK08116 hypothetical protein; Validated
Probab=98.96 E-value=8.6e-09 Score=111.45 Aligned_cols=164 Identities=22% Similarity=0.232 Sum_probs=98.8
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHH
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFV 376 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~ 376 (845)
....||++..-.+.....+..+..+.++.. ... ..+.|++|+|+||||||+||.|+|+++ +.+++.++.+++.
T Consensus 79 ~~~~tFdnf~~~~~~~~a~~~a~~y~~~~~---~~~-~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll 154 (268)
T PRK08116 79 FRNSTFENFLFDKGSEKAYKIARKYVKKFE---EMK-KENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLL 154 (268)
T ss_pred HHhcchhcccCChHHHHHHHHHHHHHHHHH---hhc-cCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 456678877654444444444444443322 111 224689999999999999999999986 8899999999887
Q ss_pred Hhhhhh----hhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEE
Q 043051 377 EMFVGV----AASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGA 452 (845)
Q Consensus 377 ~~~vG~----~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaa 452 (845)
..+... +......+++... ...+|+|||++.. ..++..+..|.+++...- ..+ ..+|.|
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e----------~~t~~~~~~l~~iin~r~----~~~-~~~IiT 217 (268)
T PRK08116 155 NRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE----------RDTEWAREKVYNIIDSRY----RKG-LPTIVT 217 (268)
T ss_pred HHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC----------CCCHHHHHHHHHHHHHHH----HCC-CCEEEE
Confidence 654321 1112223444333 2359999998653 113445666777777631 122 346677
Q ss_pred cCCC-CC----CChhhhccCcc---cEEEEeCCCCHhHHHHHHH
Q 043051 453 TNRL-DI----LDPALLRKGRF---DKIVRVGLPSKDGRFAILK 488 (845)
Q Consensus 453 TN~p-d~----LDpALlRpgRF---dr~I~v~~Pd~eeR~eIL~ 488 (845)
||.+ +. ++.++.+ |+ ...|.+.-||. |.++.+
T Consensus 218 sN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~--R~~~~~ 257 (268)
T PRK08116 218 TNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY--RKEIAK 257 (268)
T ss_pred CCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh--hHHHHH
Confidence 7764 23 4677777 53 33566666654 444444
No 210
>PRK15115 response regulator GlrR; Provisional
Probab=98.90 E-value=1.1e-08 Score=117.73 Aligned_cols=212 Identities=25% Similarity=0.316 Sum_probs=128.1
Q ss_pred cccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHhhh---
Q 043051 307 DFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEMFV--- 380 (845)
Q Consensus 307 dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~~v--- 380 (845)
.++|.......+.+....+.. ....++|+|++|||||++|+++.... +.||+.++|..+.+...
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~----------~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~ 204 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQ----------SDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESE 204 (444)
T ss_pred cccccCHHHHHHHHHHHhhcc----------CCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHH
Confidence 466766554444443333221 13469999999999999999997765 57999999987643221
Q ss_pred --hhhh-------hhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc-----CCcccCCc
Q 043051 381 --GVAA-------SRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD-----GFKVSTSQ 446 (845)
Q Consensus 381 --G~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd-----g~~~~~~~ 446 (845)
|... .....+|+.| ..++|||||||.| +...+..|..++..-. +-.....+
T Consensus 205 lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l------------~~~~q~~L~~~l~~~~~~~~g~~~~~~~~ 269 (444)
T PRK15115 205 LFGHARGAFTGAVSNREGLFQAA---EGGTLFLDEIGDM------------PAPLQVKLLRVLQERKVRPLGSNRDIDID 269 (444)
T ss_pred hcCCCcCCCCCCccCCCCcEEEC---CCCEEEEEccccC------------CHHHHHHHHHHHhhCCEEeCCCCceeeee
Confidence 1100 0011122222 3579999999999 4567788888886521 11111225
Q ss_pred EEEEEEcCCCCCCChhhhccCcccE-------EEEeCCCCHhHHHHHHH----HHHhhhcc----cchhhhhhHHHHHHH
Q 043051 447 VLVIGATNRLDILDPALLRKGRFDK-------IVRVGLPSKDGRFAILK----VHARNKYF----RSEEEKDVLLQEIAE 511 (845)
Q Consensus 447 ViVIaaTN~pd~LDpALlRpgRFdr-------~I~v~~Pd~eeR~eIL~----~~l~~~~l----~~~~~~d~dl~~LA~ 511 (845)
+.+|++|+.. ++ .+...|+|.. .+.+..|+..+|.+-+. .++..... ......+..++.|..
T Consensus 270 ~rii~~~~~~--l~-~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 346 (444)
T PRK15115 270 VRIISATHRD--LP-KAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMT 346 (444)
T ss_pred EEEEEeCCCC--HH-HHHHcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHh
Confidence 8999999864 32 3333455522 56788899999976443 33332111 111124556667776
Q ss_pred HccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 043051 512 LTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEAL 549 (845)
Q Consensus 512 ~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al 549 (845)
..-.-+.++|.++++.|+..+ ....|+.+++...+
T Consensus 347 ~~WpgNvreL~~~i~~~~~~~---~~~~i~~~~l~~~~ 381 (444)
T PRK15115 347 ASWPGNVRQLVNVIEQCVALT---SSPVISDALVEQAL 381 (444)
T ss_pred CCCCChHHHHHHHHHHHHHhC---CCCccChhhhhhhh
Confidence 662226779999999887543 34568888876544
No 211
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.89 E-value=9e-09 Score=103.11 Aligned_cols=134 Identities=25% Similarity=0.351 Sum_probs=88.8
Q ss_pred ccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------------------
Q 043051 310 GQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVP----------------------- 366 (845)
Q Consensus 310 G~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~p----------------------- 366 (845)
|++++.+.|...+.. .+.|..+||+||+|+||+++|+++|+.+-..
T Consensus 1 gq~~~~~~L~~~~~~-----------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-----------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHC-----------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHc-----------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 677777777766532 2457789999999999999999999977322
Q ss_pred eEEeechhHHHhhhhhhhhhHHHHHHHHHhc----CCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcc
Q 043051 367 FFAANGTDFVEMFVGVAASRVKDLFASARSF----APSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKV 442 (845)
Q Consensus 367 fi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~ 442 (845)
++.++.... ....+.+.+|.+.+.+... ..-|++|||+|.+ +.+.++.|+..|++
T Consensus 70 ~~~~~~~~~---~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l------------~~~a~NaLLK~LEe------ 128 (162)
T PF13177_consen 70 FIIIKPDKK---KKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL------------TEEAQNALLKTLEE------ 128 (162)
T ss_dssp EEEEETTTS---SSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-------------HHHHHHHHHHHHS------
T ss_pred eEEEecccc---cchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh------------hHHHHHHHHHHhcC------
Confidence 222211110 0012346777777766332 2459999999999 56778888888877
Q ss_pred cCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCC
Q 043051 443 STSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLP 478 (845)
Q Consensus 443 ~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~P 478 (845)
.+.++++|..|+.++.|-|.+++|+ ..+.|++.
T Consensus 129 pp~~~~fiL~t~~~~~il~TI~SRc---~~i~~~~l 161 (162)
T PF13177_consen 129 PPENTYFILITNNPSKILPTIRSRC---QVIRFRPL 161 (162)
T ss_dssp TTTTEEEEEEES-GGGS-HHHHTTS---EEEEE---
T ss_pred CCCCEEEEEEECChHHChHHHHhhc---eEEecCCC
Confidence 4556999999999999999999965 46666543
No 212
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.87 E-value=2.4e-08 Score=119.24 Aligned_cols=139 Identities=22% Similarity=0.301 Sum_probs=83.8
Q ss_pred cEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc----CC-----------cccCCcEEEEEEcCCC--CCCChh
Q 043051 400 SIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD----GF-----------KVSTSQVLVIGATNRL--DILDPA 462 (845)
Q Consensus 400 ~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd----g~-----------~~~~~~ViVIaaTN~p--d~LDpA 462 (845)
++|||||++.| +...+..|..+|.+-. |. ..-+-++.||+++|+. ..+||+
T Consensus 228 GtL~LDei~~L------------~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpd 295 (637)
T PRK13765 228 GVLFIDEINTL------------DLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPA 295 (637)
T ss_pred cEEEEeChHhC------------CHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHH
Confidence 46666666666 3567778888876411 11 0112257899999885 456999
Q ss_pred hhccCccc---EEEEeC--CC-CHhHHHHHHHHHHhhhcc--cchhhhhhHHHHHHH---HccC------CcHHHHHHHH
Q 043051 463 LLRKGRFD---KIVRVG--LP-SKDGRFAILKVHARNKYF--RSEEEKDVLLQEIAE---LTED------FTGAELQNIL 525 (845)
Q Consensus 463 LlRpgRFd---r~I~v~--~P-d~eeR~eIL~~~l~~~~l--~~~~~~d~dl~~LA~---~t~G------fSgaDL~~Lv 525 (845)
|.. ||. ..+.|+ .+ +.+.+..+++...+.... .....+...+..|.+ +..| ..-++|.+++
T Consensus 296 L~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~ 373 (637)
T PRK13765 296 LRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLV 373 (637)
T ss_pred HHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHH
Confidence 988 775 445554 22 345555555543332211 011112222333332 1122 3367999999
Q ss_pred HHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 526 NEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 526 neAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
++|..+|...+.+.++.+|+.+|+.+.
T Consensus 374 r~a~~~a~~~~~~~i~~~~v~~a~~~~ 400 (637)
T PRK13765 374 RVAGDIARSEGAELTTAEHVLEAKKIA 400 (637)
T ss_pred HHHHHHHHhhccceecHHHHHHHHHhh
Confidence 999999999999999999999988653
No 213
>PRK12377 putative replication protein; Provisional
Probab=98.87 E-value=2.4e-08 Score=106.68 Aligned_cols=133 Identities=20% Similarity=0.186 Sum_probs=82.9
Q ss_pred CCCCCccccccc-HHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhH
Q 043051 300 TTGVTFDDFAGQ-EYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDF 375 (845)
Q Consensus 300 ~~~~tF~dVvG~-de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf 375 (845)
....+|+++... +..+..+..+..+..+.. . ...+++|+||||||||+||.|+|+++ |..++.++..++
T Consensus 68 ~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~---~----~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l 140 (248)
T PRK12377 68 HRKCSFANYQVQNDGQRYALSQAKSIADELM---T----GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDV 140 (248)
T ss_pred cccCCcCCcccCChhHHHHHHHHHHHHHHHH---h----cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHH
Confidence 567789988642 333223333333332221 1 13689999999999999999999887 788888998888
Q ss_pred HHhhhhhhh--hhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEc
Q 043051 376 VEMFVGVAA--SRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGAT 453 (845)
Q Consensus 376 ~~~~vG~~~--~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaT 453 (845)
.......-. .....+++.. ....+|+|||++... .+......|.+++..--+ ...-+|.+|
T Consensus 141 ~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~----------~s~~~~~~l~~ii~~R~~-----~~~ptiitS 203 (248)
T PRK12377 141 MSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQR----------ETKNEQVVLNQIIDRRTA-----SMRSVGMLT 203 (248)
T ss_pred HHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC----------CCHHHHHHHHHHHHHHHh-----cCCCEEEEc
Confidence 765432111 1122334433 245799999997752 234466788888887421 123456678
Q ss_pred CCC
Q 043051 454 NRL 456 (845)
Q Consensus 454 N~p 456 (845)
|..
T Consensus 204 Nl~ 206 (248)
T PRK12377 204 NLN 206 (248)
T ss_pred CCC
Confidence 864
No 214
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.87 E-value=2.2e-09 Score=102.94 Aligned_cols=115 Identities=32% Similarity=0.462 Sum_probs=63.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEeech-hHH-HhhhhhhhhhHH-HHHHHHHh-cCCcEEEEcccchhccCCCC
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGT-DFV-EMFVGVAASRVK-DLFASARS-FAPSIIFIDEIDAIGSKRGG 416 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~vs~s-df~-~~~vG~~~~~vr-~lF~~A~~-~aP~ILfIDEIDaL~~~R~~ 416 (845)
+|||+|+||+|||++|+++|+.+|..|..|.++ ++. +...|...-.-. .-|...+. .-..|+++|||.+.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNra------ 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRA------ 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccC------
Confidence 489999999999999999999999999988875 332 223332100000 00000000 00259999999987
Q ss_pred CCCCCCchHHHHHHHHHHHh----hcCCcc-cCCcEEEEEEcCCCC-----CCChhhhccCcc
Q 043051 417 PDIGGGGAEREQGLLQILTE----MDGFKV-STSQVLVIGATNRLD-----ILDPALLRKGRF 469 (845)
Q Consensus 417 ~~~~~~~~e~~~~L~qLL~e----mdg~~~-~~~~ViVIaaTN~pd-----~LDpALlRpgRF 469 (845)
....++.|++.+.| ++|... -+..++||||-|+.+ .|+.+++. ||
T Consensus 75 ------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 75 ------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp -------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred ------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 45578888888887 333222 234489999999877 47888887 77
No 215
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.86 E-value=3.6e-08 Score=113.97 Aligned_cols=214 Identities=21% Similarity=0.277 Sum_probs=129.1
Q ss_pred cccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHhh--
Q 043051 305 FDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEMF-- 379 (845)
Q Consensus 305 F~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~~-- 379 (845)
+..++|.....+++.+.+..+.. ...++++.|.+||||+++|+++.... +.||+.++|+.+.+..
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~----------~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSR----------SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhC----------cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 45688888777777665544322 23579999999999999999997764 5799999998753321
Q ss_pred ---hhhhhh-------hHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc-----CCcccC
Q 043051 380 ---VGVAAS-------RVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD-----GFKVST 444 (845)
Q Consensus 380 ---vG~~~~-------~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd-----g~~~~~ 444 (845)
.|.... .....|+. ..+++|||||||.+ +...+..|+++|.+-. +.....
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~ei~~l------------~~~~q~~ll~~l~~~~~~~~~~~~~~~ 267 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFEQ---ADGGTLFLDEIGDM------------PLDAQTRLLRVLADGEFYRVGGRTPIK 267 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEEE---CCCCeEEEEchhhC------------CHHHHHHHHHHHhcCcEEECCCCceee
Confidence 121000 00111222 23689999999999 4566788888887621 111112
Q ss_pred CcEEEEEEcCCCC-------CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHH----hhhc----ccchhhhhhHHHHH
Q 043051 445 SQVLVIGATNRLD-------ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHA----RNKY----FRSEEEKDVLLQEI 509 (845)
Q Consensus 445 ~~ViVIaaTN~pd-------~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l----~~~~----l~~~~~~d~dl~~L 509 (845)
.++.+|++|+..- .+.+.|.. |+. .+.+..|+..+|.+.+..++ .... ......+...+..|
T Consensus 268 ~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 344 (463)
T TIGR01818 268 VDVRIVAATHQNLEALVRQGKFREDLFH--RLN-VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERL 344 (463)
T ss_pred eeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHH
Confidence 2478999987653 22334433 332 46777788777765544333 2211 11111234445555
Q ss_pred HHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 043051 510 AELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEAL 549 (845)
Q Consensus 510 A~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al 549 (845)
....---+-++|.+++..|++.+ ....|+.+|+...+
T Consensus 345 ~~~~wpgNvreL~~~~~~~~~~~---~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 345 KQLRWPGNVRQLENLCRWLTVMA---SGDEVLVSDLPAEL 381 (463)
T ss_pred HhCCCCChHHHHHHHHHHHHHhC---CCCcccHHhchHHH
Confidence 55421113469999999887655 33568888886655
No 216
>PRK08181 transposase; Validated
Probab=98.84 E-value=2.9e-08 Score=107.36 Aligned_cols=100 Identities=20% Similarity=0.312 Sum_probs=69.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHhhhhh-hhhhHHHHHHHHHhcCCcEEEEcccchhccCC
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEMFVGV-AASRVKDLFASARSFAPSIIFIDEIDAIGSKR 414 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~~vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R 414 (845)
..+++|+||||||||+||.|++.++ |..+++++..++++.+... .......++.... .+.+|+|||++.+..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~-- 181 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTK-- 181 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccC--
Confidence 3589999999999999999998755 7889999999988765332 1223344454443 357999999987622
Q ss_pred CCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCC
Q 043051 415 GGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRL 456 (845)
Q Consensus 415 ~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~p 456 (845)
+......|.+++...-+ .. -+|.|||.+
T Consensus 182 --------~~~~~~~Lf~lin~R~~----~~--s~IiTSN~~ 209 (269)
T PRK08181 182 --------DQAETSVLFELISARYE----RR--SILITANQP 209 (269)
T ss_pred --------CHHHHHHHHHHHHHHHh----CC--CEEEEcCCC
Confidence 34456778888887422 12 356677764
No 217
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.84 E-value=3.3e-08 Score=106.77 Aligned_cols=199 Identities=20% Similarity=0.177 Sum_probs=129.8
Q ss_pred cccccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeec
Q 043051 293 KFISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANG 372 (845)
Q Consensus 293 ~~~~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~ 372 (845)
...+.+++++.+..||++++++...+.+..+.-+ .| +.|+|||||||||....+.|..+..|.-. .
T Consensus 28 ~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~-----------lP-h~L~YgPPGtGktsti~a~a~~ly~~~~~--~ 93 (360)
T KOG0990|consen 28 PQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPG-----------LP-HLLFYGPPGTGKTSTILANARDFYSPHPT--T 93 (360)
T ss_pred CCCCccCCCCchhhhHhcCCchhhHHHHhccCCC-----------CC-cccccCCCCCCCCCchhhhhhhhcCCCCc--h
Confidence 3567788999999999999999888777643222 23 79999999999999999999998775111 1
Q ss_pred hhHHHh----hhhhhhhhH-HHHHHHHHh-------cCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCC
Q 043051 373 TDFVEM----FVGVAASRV-KDLFASARS-------FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGF 440 (845)
Q Consensus 373 sdf~~~----~vG~~~~~v-r~lF~~A~~-------~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~ 440 (845)
+-+.+. -.|...-+. -..|..++. ..+..+++||.|++. ...+++|-+.+...
T Consensus 94 ~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT------------~~AQnALRRviek~--- 158 (360)
T KOG0990|consen 94 SMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT------------RDAQNALRRVIEKY--- 158 (360)
T ss_pred hHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhh------------HHHHHHHHHHHHHh---
Confidence 111111 111111111 133555542 256799999999993 34566666644442
Q ss_pred cccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHH
Q 043051 441 KVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAE 520 (845)
Q Consensus 441 ~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaD 520 (845)
..++.++.-+|.+..+.|++.+ |+. .+.+...+.......+..++....... .......+++. +-.|
T Consensus 159 ---t~n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~---~~~~~~a~~r~----s~gD 225 (360)
T KOG0990|consen 159 ---TANTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKET---NPEGYSALGRL----SVGD 225 (360)
T ss_pred ---ccceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhc---CHHHHHHHHHH----hHHH
Confidence 2335666778999999999998 664 467777888888888888876655442 12223334444 3447
Q ss_pred HHHHHHHHHHHHH
Q 043051 521 LQNILNEAGILTA 533 (845)
Q Consensus 521 L~~LvneAal~A~ 533 (845)
++..+|.....+.
T Consensus 226 mr~a~n~Lqs~~~ 238 (360)
T KOG0990|consen 226 MRVALNYLQSILK 238 (360)
T ss_pred HHHHHHHHHHHHH
Confidence 7777776544443
No 218
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=6.7e-08 Score=107.04 Aligned_cols=133 Identities=14% Similarity=0.221 Sum_probs=96.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCe--EEeec--------------hhHH--Hhhhh--hhhhhHHHHHHHHHh
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIAGEAGVPF--FAANG--------------TDFV--EMFVG--VAASRVKDLFASARS 396 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA~elg~pf--i~vs~--------------sdf~--~~~vG--~~~~~vr~lF~~A~~ 396 (845)
+.|.++||+||+|+||+++|+++|+.+-+.- -.-.| .|+. ....| .+.+.+|++.+.+..
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~ 101 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQ 101 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhh
Confidence 4578999999999999999999999774311 00011 1110 00011 245677877666543
Q ss_pred c----CCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEE
Q 043051 397 F----APSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKI 472 (845)
Q Consensus 397 ~----aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~ 472 (845)
. .-.|++||++|.+ +.+..+.|+..|+| ++.++++|.+|+.++.|.|.++++| ..
T Consensus 102 ~~~~g~~KV~iI~~a~~m------------~~~AaNaLLKtLEE------Pp~~~~fiL~t~~~~~llpTI~SRC---~~ 160 (325)
T PRK06871 102 HAQQGGNKVVYIQGAERL------------TEAAANALLKTLEE------PRPNTYFLLQADLSAALLPTIYSRC---QT 160 (325)
T ss_pred ccccCCceEEEEechhhh------------CHHHHHHHHHHhcC------CCCCeEEEEEECChHhCchHHHhhc---eE
Confidence 2 2359999999999 45677778777777 5566899999999999999999966 58
Q ss_pred EEeCCCCHhHHHHHHHHH
Q 043051 473 VRVGLPSKDGRFAILKVH 490 (845)
Q Consensus 473 I~v~~Pd~eeR~eIL~~~ 490 (845)
+.|++|+.++..+.|...
T Consensus 161 ~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred EeCCCCCHHHHHHHHHHH
Confidence 999999999888877654
No 219
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=3e-08 Score=110.57 Aligned_cols=133 Identities=20% Similarity=0.275 Sum_probs=95.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCeE---Eeech--------------hHHHh--h-----------------
Q 043051 336 IYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFF---AANGT--------------DFVEM--F----------------- 379 (845)
Q Consensus 336 ~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi---~vs~s--------------df~~~--~----------------- 379 (845)
.+.|.++||+||+|+||+++|+++|+.+.+..- .-.|. |+... -
T Consensus 18 ~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~ 97 (342)
T PRK06964 18 ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEAD 97 (342)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccch
Confidence 367899999999999999999999998754220 00110 11000 0
Q ss_pred ------------hhhhhhhHHHHHHHHHhc----CCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCccc
Q 043051 380 ------------VGVAASRVKDLFASARSF----APSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVS 443 (845)
Q Consensus 380 ------------vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~ 443 (845)
...+.+.||++.+.+... .-.|++||++|.+ +.+..+.|+..|+| +
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m------------~~~AaNaLLKtLEE------P 159 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL------------NVAAANALLKTLEE------P 159 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc------------CHHHHHHHHHHhcC------C
Confidence 012346777777665331 1249999999999 45566777777765 4
Q ss_pred CCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHH
Q 043051 444 TSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKV 489 (845)
Q Consensus 444 ~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~ 489 (845)
+.++++|..|++++.|.|.++|++ ..+.|++|+.++..+.|..
T Consensus 160 p~~t~fiL~t~~~~~LLpTI~SRc---q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 160 PPGTVFLLVSARIDRLLPTILSRC---RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred CcCcEEEEEECChhhCcHHHHhcC---EEEEecCCCHHHHHHHHHH
Confidence 566999999999999999999955 6899999999988888864
No 220
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.81 E-value=4.7e-08 Score=104.28 Aligned_cols=133 Identities=20% Similarity=0.231 Sum_probs=86.6
Q ss_pred CCCCCcccccc-cHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhH
Q 043051 300 TTGVTFDDFAG-QEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDF 375 (845)
Q Consensus 300 ~~~~tF~dVvG-~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf 375 (845)
....+|+++.- .+..+..+..+..+.++.. . ...+++|+|+||||||+||.++|.++ |.+++.++.+++
T Consensus 66 ~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~---~----~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l 138 (244)
T PRK07952 66 HQNCSFENYRVECEGQMNALSKARQYVEEFD---G----NIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADI 138 (244)
T ss_pred ccCCccccccCCCchHHHHHHHHHHHHHhhc---c----CCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHH
Confidence 56788998863 3444444555555543321 1 13489999999999999999999987 788999999988
Q ss_pred HHhhhhh---hhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEE
Q 043051 376 VEMFVGV---AASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGA 452 (845)
Q Consensus 376 ~~~~vG~---~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaa 452 (845)
...+.+. .......+++... ...+|+|||++... ..+.....+.+++..-- ..+-.+|.+
T Consensus 139 ~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~----------~s~~~~~~l~~Ii~~Ry-----~~~~~tiit 201 (244)
T PRK07952 139 MSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT----------ESRYEKVIINQIVDRRS-----SSKRPTGML 201 (244)
T ss_pred HHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC----------CCHHHHHHHHHHHHHHH-----hCCCCEEEe
Confidence 8654432 1122334454433 46799999998862 13445567778877631 122456667
Q ss_pred cCCC
Q 043051 453 TNRL 456 (845)
Q Consensus 453 TN~p 456 (845)
||..
T Consensus 202 SNl~ 205 (244)
T PRK07952 202 TNSN 205 (244)
T ss_pred CCCC
Confidence 8864
No 221
>PRK06526 transposase; Provisional
Probab=98.80 E-value=1.9e-08 Score=107.89 Aligned_cols=101 Identities=24% Similarity=0.317 Sum_probs=67.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHhhhhh-hhhhHHHHHHHHHhcCCcEEEEcccchhccCC
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEMFVGV-AASRVKDLFASARSFAPSIIFIDEIDAIGSKR 414 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~~vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R 414 (845)
+.+++|+||||||||+||.+++.++ |..++.++.+++++..... ....+...+... ..+.+|+|||++.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~--- 172 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP--- 172 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC---
Confidence 4689999999999999999998875 7788888888887654321 112233333332 245799999999872
Q ss_pred CCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCC
Q 043051 415 GGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLD 457 (845)
Q Consensus 415 ~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd 457 (845)
.+......|.+++..... .. .+|.+||.+-
T Consensus 173 -------~~~~~~~~L~~li~~r~~----~~--s~IitSn~~~ 202 (254)
T PRK06526 173 -------FEPEAANLFFQLVSSRYE----RA--SLIVTSNKPF 202 (254)
T ss_pred -------CCHHHHHHHHHHHHHHHh----cC--CEEEEcCCCH
Confidence 134455678888776421 12 3666787653
No 222
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.79 E-value=1e-07 Score=111.57 Aligned_cols=215 Identities=17% Similarity=0.210 Sum_probs=128.3
Q ss_pred ccccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEe-ec
Q 043051 294 FISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAA-NG 372 (845)
Q Consensus 294 ~~~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~v-s~ 372 (845)
..|.+++.|.+.+||+.+..-.++++..+.... .+....+-+||+||||||||++++.||+++|..+.+- +.
T Consensus 7 ~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~-------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np 79 (519)
T PF03215_consen 7 EPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMF-------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINP 79 (519)
T ss_pred CccchhcCCCCHHHhhccHHHHHHHHHHHHHHh-------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCC
Confidence 467788999999999999766666665554311 1222345688999999999999999999998766543 22
Q ss_pred hhHH------Hhhhhh---------hhhhHHHH-HHHHHh-----------cCCcEEEEcccchhccCCCCCCCCCCchH
Q 043051 373 TDFV------EMFVGV---------AASRVKDL-FASARS-----------FAPSIIFIDEIDAIGSKRGGPDIGGGGAE 425 (845)
Q Consensus 373 sdf~------~~~vG~---------~~~~vr~l-F~~A~~-----------~aP~ILfIDEIDaL~~~R~~~~~~~~~~e 425 (845)
..+. ..+.+. ......++ +..++. ..+.||+|+|+-.+... ....
T Consensus 80 ~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~--------~~~~ 151 (519)
T PF03215_consen 80 VSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR--------DTSR 151 (519)
T ss_pred CCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch--------hHHH
Confidence 2110 011110 01112222 222221 24579999999876321 1233
Q ss_pred HHHHHHHHHHhhcCCcccCCcEEEEEE-c------CCC--------CCCChhhhccCcccEEEEeCCCCHhHHHHHHHHH
Q 043051 426 REQGLLQILTEMDGFKVSTSQVLVIGA-T------NRL--------DILDPALLRKGRFDKIVRVGLPSKDGRFAILKVH 490 (845)
Q Consensus 426 ~~~~L~qLL~emdg~~~~~~~ViVIaa-T------N~p--------d~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~ 490 (845)
....|.+++..- ...++|+|.+ + |.. ..+++.++...+. .+|.|.+-...-..+.|+..
T Consensus 152 f~~~L~~~l~~~-----~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI 225 (519)
T PF03215_consen 152 FREALRQYLRSS-----RCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRI 225 (519)
T ss_pred HHHHHHHHHHcC-----CCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHH
Confidence 444444444431 1115777666 1 111 1457777764444 47899988888888877777
Q ss_pred Hhhh-----cccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 043051 491 ARNK-----YFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTA 533 (845)
Q Consensus 491 l~~~-----~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~ 533 (845)
+... +..........++.|+..+.| ||+.+++...+.+.
T Consensus 226 ~~~E~~~~~~~~~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 226 LKKEARSSSGKNKVPDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred HHHHhhhhcCCccCCChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 6544 111111122347788777555 99999998888876
No 223
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=6.4e-08 Score=107.81 Aligned_cols=151 Identities=13% Similarity=0.140 Sum_probs=103.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCC--eEEeec--------------hhHHHh--h---hhhhhhhHHHHHHHH
Q 043051 336 IYCPKGVLLHGPPGTGKTLLAKAIAGEAGVP--FFAANG--------------TDFVEM--F---VGVAASRVKDLFASA 394 (845)
Q Consensus 336 ~~~PrgVLL~GPPGTGKT~LArALA~elg~p--fi~vs~--------------sdf~~~--~---vG~~~~~vr~lF~~A 394 (845)
.+.|..+||+||+|+||+++|.++|+.+-+. --...| .|+... - ...+.+.+|++.+.+
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~ 100 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKL 100 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHH
Confidence 4568899999999999999999999977331 000011 111000 0 013456777777665
Q ss_pred Hhc----CCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCccc
Q 043051 395 RSF----APSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFD 470 (845)
Q Consensus 395 ~~~----aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFd 470 (845)
... .-.|++||++|.+ +.+..+.|+..|+| ++.++++|..|+.++.|.|.++|++
T Consensus 101 ~~~~~~g~~kV~iI~~ae~m------------~~~AaNaLLKtLEE------Pp~~t~fiL~t~~~~~lLpTIrSRC--- 159 (334)
T PRK07993 101 YEHARLGGAKVVWLPDAALL------------TDAAANALLKTLEE------PPENTWFFLACREPARLLATLRSRC--- 159 (334)
T ss_pred hhccccCCceEEEEcchHhh------------CHHHHHHHHHHhcC------CCCCeEEEEEECChhhChHHHHhcc---
Confidence 432 2359999999999 55677777777776 5666899999999999999999966
Q ss_pred EEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccC
Q 043051 471 KIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTED 515 (845)
Q Consensus 471 r~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~G 515 (845)
..+.|++|+.++..+.|... .+.. ......+++.+.|
T Consensus 160 q~~~~~~~~~~~~~~~L~~~---~~~~-----~~~a~~~~~la~G 196 (334)
T PRK07993 160 RLHYLAPPPEQYALTWLSRE---VTMS-----QDALLAALRLSAG 196 (334)
T ss_pred ccccCCCCCHHHHHHHHHHc---cCCC-----HHHHHHHHHHcCC
Confidence 46899999988887776532 1222 2334566667666
No 224
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.76 E-value=4.5e-08 Score=112.24 Aligned_cols=212 Identities=24% Similarity=0.302 Sum_probs=126.9
Q ss_pred cccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHhhh---
Q 043051 307 DFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEMFV--- 380 (845)
Q Consensus 307 dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~~v--- 380 (845)
.++|.......+..-+..+.. ....++++|.+||||+++|+++.... +.||+.++|+.+.+...
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~----------~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~ 209 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAP----------SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESE 209 (441)
T ss_pred ceEecCHHHHHHHHHHhhccC----------CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHH
Confidence 467777666655544443321 23579999999999999999997654 57999999986543221
Q ss_pred --hhhhh-------hHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc-----CCcccCCc
Q 043051 381 --GVAAS-------RVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD-----GFKVSTSQ 446 (845)
Q Consensus 381 --G~~~~-------~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd-----g~~~~~~~ 446 (845)
|.... ....+|.. ..+++|||||||.| +...+..|..++.+-. +......+
T Consensus 210 lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ldei~~l------------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~ 274 (441)
T PRK10365 210 LFGHEKGAFTGADKRREGRFVE---ADGGTLFLDEIGDI------------SPMMQVRLLRAIQEREVQRVGSNQTISVD 274 (441)
T ss_pred hcCCCCCCcCCCCcCCCCceeE---CCCCEEEEeccccC------------CHHHHHHHHHHHccCcEEeCCCCceeeec
Confidence 11100 00112222 24689999999999 4556777777776521 11111224
Q ss_pred EEEEEEcCCCCCCChhhhccCcccE-------EEEeCCCCHhHHHHHHH----HHHhhhc----ccchhhhhhHHHHHHH
Q 043051 447 VLVIGATNRLDILDPALLRKGRFDK-------IVRVGLPSKDGRFAILK----VHARNKY----FRSEEEKDVLLQEIAE 511 (845)
Q Consensus 447 ViVIaaTN~pd~LDpALlRpgRFdr-------~I~v~~Pd~eeR~eIL~----~~l~~~~----l~~~~~~d~dl~~LA~ 511 (845)
+.+|++|+.+- ..+..+|+|.. .+.+..|+..+|.+-+. .++.... ..........+..|..
T Consensus 275 ~rii~~t~~~~---~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 351 (441)
T PRK10365 275 VRLIAATHRDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIH 351 (441)
T ss_pred eEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHh
Confidence 77888887643 23444556643 57888898888876443 3332211 1101123444555555
Q ss_pred HccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 043051 512 LTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEAL 549 (845)
Q Consensus 512 ~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al 549 (845)
..-.-+-++|.++++.|+..+ ....|+.+++...+
T Consensus 352 ~~wpgN~reL~~~~~~~~~~~---~~~~i~~~~l~~~~ 386 (441)
T PRK10365 352 YDWPGNIRELENAVERAVVLL---TGEYISERELPLAI 386 (441)
T ss_pred CCCCCHHHHHHHHHHHHHHhC---CCCccchHhCchhh
Confidence 442225678888888877543 34568888876554
No 225
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.76 E-value=3e-07 Score=107.75 Aligned_cols=191 Identities=17% Similarity=0.294 Sum_probs=127.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc----------CCCeEEeechhHHH---hhhhh-------------hhhhHHHHHHHH
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEA----------GVPFFAANGTDFVE---MFVGV-------------AASRVKDLFASA 394 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~el----------g~pfi~vs~sdf~~---~~vG~-------------~~~~vr~lF~~A 394 (845)
.+++.|-||||||.+++.+-.++ ..+|+.+|+-.+.+ .|.+. +-..+..-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 68999999999999999997755 36788888865543 22221 111222223311
Q ss_pred -HhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCC----CChhhhccCcc
Q 043051 395 -RSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDI----LDPALLRKGRF 469 (845)
Q Consensus 395 -~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~----LDpALlRpgRF 469 (845)
-...+|||+|||+|.|..+ .+..|..+++.- .....+++||+..|.-+. |...+.+ |.
T Consensus 504 k~~~~~~VvLiDElD~Lvtr------------~QdVlYn~fdWp---t~~~sKLvvi~IaNTmdlPEr~l~nrvsS--Rl 566 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTR------------SQDVLYNIFDWP---TLKNSKLVVIAIANTMDLPERLLMNRVSS--RL 566 (767)
T ss_pred CCCCCCEEEEeccHHHHhcc------------cHHHHHHHhcCC---cCCCCceEEEEecccccCHHHHhccchhh--hc
Confidence 1235799999999999754 245566665442 234556888888876553 2333334 43
Q ss_pred c-EEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcH--HHHHHHHHHHHHHHHHcCC-------Cc
Q 043051 470 D-KIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTG--AELQNILNEAGILTARKDL-------DY 539 (845)
Q Consensus 470 d-r~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSg--aDL~~LvneAal~A~r~~~-------~~ 539 (845)
+ +.|.|.+++..+..+|+...+.....- .....+-+|+.....|| +...++|+.|+-+|..+.. ..
T Consensus 567 g~tRi~F~pYth~qLq~Ii~~RL~~~~~f----~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~ 642 (767)
T KOG1514|consen 567 GLTRICFQPYTHEQLQEIISARLKGLDAF----ENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQL 642 (767)
T ss_pred cceeeecCCCCHHHHHHHHHHhhcchhhc----chhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccce
Confidence 3 378999999999999999888765222 33445555555444454 4666789999988877665 56
Q ss_pred cCHHHHHHHHHhc
Q 043051 540 IGQEELLEALKRQ 552 (845)
Q Consensus 540 It~edl~~Al~r~ 552 (845)
|++.|+.+|+...
T Consensus 643 v~~~~v~~Ai~em 655 (767)
T KOG1514|consen 643 VGILHVMEAINEM 655 (767)
T ss_pred eehHHHHHHHHHH
Confidence 8899999999887
No 226
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=9e-08 Score=105.82 Aligned_cols=153 Identities=19% Similarity=0.216 Sum_probs=102.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCe--E--Eeec---------hhHHHh-----h------hhhhhhhHHHHH
Q 043051 336 IYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPF--F--AANG---------TDFVEM-----F------VGVAASRVKDLF 391 (845)
Q Consensus 336 ~~~PrgVLL~GPPGTGKT~LArALA~elg~pf--i--~vs~---------sdf~~~-----~------vG~~~~~vr~lF 391 (845)
.+.|..+||+||+|+||+++|.++|+.+-+.- - .+.+ .|+.-. . ...+.+.||++.
T Consensus 23 ~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~ 102 (319)
T PRK08769 23 GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREIS 102 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHH
Confidence 35678999999999999999999998763311 0 0000 011000 0 012356777777
Q ss_pred HHHHhcC----CcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccC
Q 043051 392 ASARSFA----PSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKG 467 (845)
Q Consensus 392 ~~A~~~a----P~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpg 467 (845)
+.+.... -.|++||++|.+ +....+.|+..|+| ++.++++|..|+.++.|-|.++++|
T Consensus 103 ~~~~~~p~~g~~kV~iI~~ae~m------------~~~AaNaLLKtLEE------Pp~~~~fiL~~~~~~~lLpTIrSRC 164 (319)
T PRK08769 103 QKLALTPQYGIAQVVIVDPADAI------------NRAACNALLKTLEE------PSPGRYLWLISAQPARLPATIRSRC 164 (319)
T ss_pred HHHhhCcccCCcEEEEeccHhhh------------CHHHHHHHHHHhhC------CCCCCeEEEEECChhhCchHHHhhh
Confidence 7664322 259999999999 45667778887777 4456888888999999999999966
Q ss_pred cccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcH
Q 043051 468 RFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTG 518 (845)
Q Consensus 468 RFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSg 518 (845)
..+.|+.|+.++-.+.|... +.. ......++..+.|-.+
T Consensus 165 ---q~i~~~~~~~~~~~~~L~~~----~~~-----~~~a~~~~~l~~G~p~ 203 (319)
T PRK08769 165 ---QRLEFKLPPAHEALAWLLAQ----GVS-----ERAAQEALDAARGHPG 203 (319)
T ss_pred ---eEeeCCCcCHHHHHHHHHHc----CCC-----hHHHHHHHHHcCCCHH
Confidence 57899999998877776532 222 2234456667666433
No 227
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.75 E-value=1.5e-08 Score=98.39 Aligned_cols=106 Identities=28% Similarity=0.520 Sum_probs=73.9
Q ss_pred cccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC---CCeEEeechhHHHhhhhhhhh
Q 043051 309 AGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAG---VPFFAANGTDFVEMFVGVAAS 385 (845)
Q Consensus 309 vG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg---~pfi~vs~sdf~~~~vG~~~~ 385 (845)
+|.....+.+.+-+..+... ..+|||+|+|||||+++|+++....+ .||+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~----------~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKS----------SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCS----------SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHHHhCC----------CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 46677777777766665432 35799999999999999999988764 478888877532
Q ss_pred hHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCC
Q 043051 386 RVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNR 455 (845)
Q Consensus 386 ~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~ 455 (845)
.++++.+ .+++|||+|||.+ +.+.+..|.++|...+ ..++.+|+++..
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L------------~~~~Q~~L~~~l~~~~-----~~~~RlI~ss~~ 109 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRL------------SPEAQRRLLDLLKRQE-----RSNVRLIASSSQ 109 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS-------------HHHHHHHHHHHHHCT-----TTTSEEEEEECC
T ss_pred --HHHHHHc---CCCEEEECChHHC------------CHHHHHHHHHHHHhcC-----CCCeEEEEEeCC
Confidence 3455555 5689999999999 5677888888888742 233566666643
No 228
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.70 E-value=2.1e-07 Score=101.69 Aligned_cols=217 Identities=24% Similarity=0.264 Sum_probs=136.9
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHH
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFV 376 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~ 376 (845)
.....|+.+++.....+.+.+-...+ .-+ .-++||.|..||||-++||+.-..+ ..||+.+||+.+-
T Consensus 198 ~~~~~F~~~v~~S~~mk~~v~qA~k~------Aml----DAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lP 267 (511)
T COG3283 198 QDVSGFEQIVAVSPKMKHVVEQAQKL------AML----DAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLP 267 (511)
T ss_pred ccccchHHHhhccHHHHHHHHHHHHh------hcc----CCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCc
Confidence 45667999999887666554432221 111 2358999999999999999985544 6899999998764
Q ss_pred Hh-----hhhhhh--hhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCc------cc
Q 043051 377 EM-----FVGVAA--SRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFK------VS 443 (845)
Q Consensus 377 ~~-----~vG~~~--~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~------~~ 443 (845)
+. ..|..+ ..-..+|++|.. +.+|+|||..+ +...+..|+.+|..- .|. .-
T Consensus 268 e~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEm------------Sp~lQaKLLRFL~DG-tFRRVGee~Ev 331 (511)
T COG3283 268 EDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEM------------SPRLQAKLLRFLNDG-TFRRVGEDHEV 331 (511)
T ss_pred hhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhc------------CHHHHHHHHHHhcCC-ceeecCCcceE
Confidence 32 334332 455678998865 89999999888 567788899988751 121 11
Q ss_pred CCcEEEEEEcCCCCCCChhhhccCcccE-------EEEeCCCCHhHHHHHHHH--------HHhhhcccchhhhhhHHHH
Q 043051 444 TSQVLVIGATNRLDILDPALLRKGRFDK-------IVRVGLPSKDGRFAILKV--------HARNKYFRSEEEKDVLLQE 508 (845)
Q Consensus 444 ~~~ViVIaaTN~pd~LDpALlRpgRFdr-------~I~v~~Pd~eeR~eIL~~--------~l~~~~l~~~~~~d~dl~~ 508 (845)
.-+|.|||||..+- ..+...|+|.. ++.+..|...+|..-+.- +....+...+......+..
T Consensus 332 ~vdVRVIcatq~nL---~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~ 408 (511)
T COG3283 332 HVDVRVICATQVNL---VELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTV 408 (511)
T ss_pred EEEEEEEecccccH---HHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHH
Confidence 22599999997654 23333444422 778889998888664432 3333333333333334444
Q ss_pred HHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 043051 509 IAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEA 548 (845)
Q Consensus 509 LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~A 548 (845)
+.+.----+-+++.|++-+|+... ....++.+++.-+
T Consensus 409 L~~y~WpGNVRqL~N~iyRA~s~~---Eg~~l~i~~i~Lp 445 (511)
T COG3283 409 LTRYAWPGNVRQLKNAIYRALTLL---EGYELRIEDILLP 445 (511)
T ss_pred HHHcCCCccHHHHHHHHHHHHHHh---ccCccchhhcccC
Confidence 444322124568888888886544 2345666666443
No 229
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.69 E-value=1.9e-07 Score=110.87 Aligned_cols=193 Identities=13% Similarity=0.082 Sum_probs=127.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC--CCeEEeechhHHHhhhhhh---------hh-hHHHHHHHHHhcCCcEEEEccc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAG--VPFFAANGTDFVEMFVGVA---------AS-RVKDLFASARSFAPSIIFIDEI 407 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg--~pfi~vs~sdf~~~~vG~~---------~~-~vr~lF~~A~~~aP~ILfIDEI 407 (845)
.||+|.|++|||||+++++++.-+. .||..+..+--....+|.. .. --..++..|. .+||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah---~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD---GGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc---CCEEEecCc
Confidence 5899999999999999999999874 5888776554334444432 10 1123333332 379999999
Q ss_pred chhccCCCCCCCCCCchHHHHHHHHHHHhh------cCCcc-cCCcEEEEEEcCCC---CCCChhhhccCcccEEEEeCC
Q 043051 408 DAIGSKRGGPDIGGGGAEREQGLLQILTEM------DGFKV-STSQVLVIGATNRL---DILDPALLRKGRFDKIVRVGL 477 (845)
Q Consensus 408 DaL~~~R~~~~~~~~~~e~~~~L~qLL~em------dg~~~-~~~~ViVIaaTN~p---d~LDpALlRpgRFdr~I~v~~ 477 (845)
..+ +......|.+-+.+= +|... .+.++++|++-|.. ..|.++++. ||+.++.++.
T Consensus 103 n~~------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~ 168 (584)
T PRK13406 103 ERL------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDG 168 (584)
T ss_pred ccC------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCC
Confidence 988 344566666666541 23222 23458888874432 348999999 9999999998
Q ss_pred CCHhHH-------HHHHHHHHhhhcccchhhhhhHHHHHHHHc--cCC-cHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Q 043051 478 PSKDGR-------FAILKVHARNKYFRSEEEKDVLLQEIAELT--EDF-TGAELQNILNEAGILTARKDLDYIGQEELLE 547 (845)
Q Consensus 478 Pd~eeR-------~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t--~Gf-SgaDL~~LvneAal~A~r~~~~~It~edl~~ 547 (845)
|+..+. .+|....-+-..... ++..+..++..+ .|. |.+-...+++-|..+|+-.+++.|+.+|+.+
T Consensus 169 ~~~~~~~~~~~~~~~I~~AR~rl~~v~v---~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~ 245 (584)
T PRK13406 169 LALRDAREIPIDADDIAAARARLPAVGP---PPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLAL 245 (584)
T ss_pred CChHHhcccCCCHHHHHHHHHHHccCCC---CHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 875532 223322211111111 334444444432 355 7788888999999999999999999999999
Q ss_pred HHHhc
Q 043051 548 ALKRQ 552 (845)
Q Consensus 548 Al~r~ 552 (845)
|+.-+
T Consensus 246 Aa~lv 250 (584)
T PRK13406 246 AARLV 250 (584)
T ss_pred HHHHH
Confidence 98754
No 230
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.69 E-value=1.5e-07 Score=103.78 Aligned_cols=133 Identities=21% Similarity=0.189 Sum_probs=81.3
Q ss_pred CCCcccccccH-HHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHH
Q 043051 302 GVTFDDFAGQE-YIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVE 377 (845)
Q Consensus 302 ~~tF~dVvG~d-e~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~ 377 (845)
..+|+++...+ .....+..+..++.+.. . ....+|++|+||+|||||+||.|+|+++ |.++..++.++|+.
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~~~---~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEAYP---P--GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHHhh---c--cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 45677766433 33333334445554321 1 1235799999999999999999999987 78888889888876
Q ss_pred hhhhh-hhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHH-HHHHHHHHh-hcCCcccCCcEEEEEEcC
Q 043051 378 MFVGV-AASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAERE-QGLLQILTE-MDGFKVSTSQVLVIGATN 454 (845)
Q Consensus 378 ~~vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~-~~L~qLL~e-mdg~~~~~~~ViVIaaTN 454 (845)
.+... ....+...++..+ ...+|+||||.+-. .++... ..|..++.. +. .+...|.|||
T Consensus 198 ~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~----------~s~~~~~~ll~~Il~~R~~------~~~~ti~TSN 259 (306)
T PRK08939 198 ELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQ----------MSSWVRDEVLGVILQYRMQ------EELPTFFTSN 259 (306)
T ss_pred HHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCcc----------ccHHHHHHHHHHHHHHHHH------CCCeEEEECC
Confidence 54332 2223444555443 34699999997641 122333 344445543 21 2256777888
Q ss_pred CCC
Q 043051 455 RLD 457 (845)
Q Consensus 455 ~pd 457 (845)
.+-
T Consensus 260 l~~ 262 (306)
T PRK08939 260 FDF 262 (306)
T ss_pred CCH
Confidence 653
No 231
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.66 E-value=3.7e-07 Score=97.02 Aligned_cols=184 Identities=18% Similarity=0.271 Sum_probs=131.1
Q ss_pred cccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-C--CC-----
Q 043051 295 ISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA-G--VP----- 366 (845)
Q Consensus 295 ~~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el-g--~p----- 366 (845)
+|.+++++.+|+.+.+.++....|..+...-.. .++++|||+|+||-|.+.++-+++ | ++
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~------------PHll~yGPSGaGKKTrimclL~elYG~gveklki~ 69 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSSTGDF------------PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIE 69 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhcccCCC------------CeEEEECCCCCCchhhHHHHHHHHhCCCchheeee
Confidence 455668889999999999888887776541111 258999999999999999998887 2 21
Q ss_pred ---------------------eEEeechhHHHhhhhh-hhhhHHHHHHHHHhcCC---------cEEEEcccchhccCCC
Q 043051 367 ---------------------FFAANGTDFVEMFVGV-AASRVKDLFASARSFAP---------SIIFIDEIDAIGSKRG 415 (845)
Q Consensus 367 ---------------------fi~vs~sdf~~~~vG~-~~~~vr~lF~~A~~~aP---------~ILfIDEIDaL~~~R~ 415 (845)
.++++.|| +|. ..--+.+++....+..| .+++|.|.|.|.
T Consensus 70 ~~t~~tpS~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT---- 140 (351)
T KOG2035|consen 70 TRTFTTPSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT---- 140 (351)
T ss_pred eEEEecCCCceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh----
Confidence 11222222 121 12234555555433332 489999999993
Q ss_pred CCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhc
Q 043051 416 GPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKY 495 (845)
Q Consensus 416 ~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~ 495 (845)
.+.+..|-.-++.- .+.+.+|..+|....+-+++++++ ..|.++.|+.++...++...+.+.+
T Consensus 141 --------~dAQ~aLRRTMEkY------s~~~RlIl~cns~SriIepIrSRC---l~iRvpaps~eeI~~vl~~v~~kE~ 203 (351)
T KOG2035|consen 141 --------RDAQHALRRTMEKY------SSNCRLILVCNSTSRIIEPIRSRC---LFIRVPAPSDEEITSVLSKVLKKEG 203 (351)
T ss_pred --------HHHHHHHHHHHHHH------hcCceEEEEecCcccchhHHhhhe---eEEeCCCCCHHHHHHHHHHHHHHhc
Confidence 45666666665542 344788888999999999999966 5689999999999999999999988
Q ss_pred ccchhhhhhHHHHHHHHccCCcHHHHHH
Q 043051 496 FRSEEEKDVLLQEIAELTEDFTGAELQN 523 (845)
Q Consensus 496 l~~~~~~d~dl~~LA~~t~GfSgaDL~~ 523 (845)
+.. +...+..+|+.+.| +++.
T Consensus 204 l~l---p~~~l~rIa~kS~~----nLRr 224 (351)
T KOG2035|consen 204 LQL---PKELLKRIAEKSNR----NLRR 224 (351)
T ss_pred ccC---cHHHHHHHHHHhcc----cHHH
Confidence 876 45667888887554 5554
No 232
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.65 E-value=5.9e-07 Score=92.69 Aligned_cols=167 Identities=23% Similarity=0.266 Sum_probs=87.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC---CeEEeec-h-hH---HHhh-------------hh----------------
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGV---PFFAANG-T-DF---VEMF-------------VG---------------- 381 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~---pfi~vs~-s-df---~~~~-------------vG---------------- 381 (845)
...++|+||.|+|||+|++.+.....- ..+++.. . .. ...+ .+
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 357999999999999999999998832 1222211 1 00 0000 11
Q ss_pred -hhhhhHHHHHHHHHhcC-CcEEEEcccchhc-cCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCC--
Q 043051 382 -VAASRVKDLFASARSFA-PSIIFIDEIDAIG-SKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRL-- 456 (845)
Q Consensus 382 -~~~~~vr~lF~~A~~~a-P~ILfIDEIDaL~-~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~p-- 456 (845)
.....+..+++...+.. ..||+|||++.+. ..+ ........+..++.. .....+..+|+++++..
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~-------~~~~~~~~l~~~~~~---~~~~~~~~~v~~~S~~~~~ 169 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE-------EDKDFLKSLRSLLDS---LLSQQNVSIVITGSSDSLM 169 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT-------TTHHHHHHHHHHHHH-------TTEEEEEEESSHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc-------chHHHHHHHHHHHhh---ccccCCceEEEECCchHHH
Confidence 12334556666655432 4899999999996 211 123334444454444 12223324444444311
Q ss_pred -C--CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHH
Q 043051 457 -D--ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAEL 521 (845)
Q Consensus 457 -d--~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL 521 (845)
+ .-...+. +|+.. +.+++.+.++..++++..+... ... ..++.+++.+...+.|. |+-|
T Consensus 170 ~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~-P~~l 231 (234)
T PF01637_consen 170 EEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGN-PRYL 231 (234)
T ss_dssp HHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT--HHHH
T ss_pred HHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCC-HHHH
Confidence 1 0112233 37776 9999999999999999887665 322 23567789999999884 4444
No 233
>PRK09183 transposase/IS protein; Provisional
Probab=98.64 E-value=1.7e-07 Score=100.97 Aligned_cols=101 Identities=26% Similarity=0.353 Sum_probs=68.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHhhhh-hhhhhHHHHHHHHHhcCCcEEEEcccchhccCC
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEMFVG-VAASRVKDLFASARSFAPSIIFIDEIDAIGSKR 414 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~~vG-~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R 414 (845)
..+++|+||||||||+||.+++.++ |..+.++++.++...+.. .....+...+.... ..+.+++|||++.+..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~-~~~dlLiiDdlg~~~~-- 178 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGV-MAPRLLIIDEIGYLPF-- 178 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHh-cCCCEEEEcccccCCC--
Confidence 4589999999999999999997664 778888888887754432 12223445555432 3567999999987621
Q ss_pred CCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCC
Q 043051 415 GGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRL 456 (845)
Q Consensus 415 ~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~p 456 (845)
+.+....|.+++....+ .+ .+|.|||.+
T Consensus 179 --------~~~~~~~lf~li~~r~~----~~--s~iiTsn~~ 206 (259)
T PRK09183 179 --------SQEEANLFFQVIAKRYE----KG--SMILTSNLP 206 (259)
T ss_pred --------ChHHHHHHHHHHHHHHh----cC--cEEEecCCC
Confidence 23445577888776422 22 256678764
No 234
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=3e-07 Score=102.11 Aligned_cols=131 Identities=21% Similarity=0.301 Sum_probs=93.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCC-------------------------eEEeechhHHHhhhh-----hhhhh
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIAGEAGVP-------------------------FFAANGTDFVEMFVG-----VAASR 386 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA~elg~p-------------------------fi~vs~sdf~~~~vG-----~~~~~ 386 (845)
+.|.++||+||+|+|||++|+++|+.+.+. |+.++...- +.-.| .+.+.
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~-~~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSD-EPENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccc-cccccccCCCcCHHH
Confidence 678899999999999999999999986431 222222100 00001 24567
Q ss_pred HHHHHHHHHhc----CCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChh
Q 043051 387 VKDLFASARSF----APSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPA 462 (845)
Q Consensus 387 vr~lF~~A~~~----aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpA 462 (845)
||++.+.+... ...|++||+++.+ +....+.++.+|++. ...+.+|.+|+.++.+.+.
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~L------------d~~a~naLLk~LEep------~~~~~~Ilvth~~~~ll~t 159 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESM------------NLQAANSLLKVLEEP------PPQVVFLLVSHAADKVLPT 159 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhC------------CHHHHHHHHHHHHhC------cCCCEEEEEeCChHhChHH
Confidence 88888777542 2359999999998 556778888888774 1236677788888899999
Q ss_pred hhccCcccEEEEeCCCCHhHHHHHHHH
Q 043051 463 LLRKGRFDKIVRVGLPSKDGRFAILKV 489 (845)
Q Consensus 463 LlRpgRFdr~I~v~~Pd~eeR~eIL~~ 489 (845)
+.+++ .++.|++|+.++..+.|..
T Consensus 160 i~SRc---~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 160 IKSRC---RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HHHHh---hhhcCCCCCHHHHHHHHHh
Confidence 99865 5789999999888777753
No 235
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.61 E-value=3e-07 Score=98.75 Aligned_cols=102 Identities=25% Similarity=0.340 Sum_probs=67.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHhhhhhhhh-hHHHHHHHHHhcCCcEEEEcccchhccCC
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEMFVGVAAS-RVKDLFASARSFAPSIIFIDEIDAIGSKR 414 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~~vG~~~~-~vr~lF~~A~~~aP~ILfIDEIDaL~~~R 414 (845)
+.+++|+||||||||+||-|+++++ |.+++.++.++++...-..-.. ....-+..... ...+|+|||+...-
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~-~~dlLIiDDlG~~~--- 180 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELK-KVDLLIIDDIGYEP--- 180 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhh-cCCEEEEecccCcc---
Confidence 5799999999999999999998877 8999999999998754332221 22222222112 34699999987762
Q ss_pred CCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCC
Q 043051 415 GGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLD 457 (845)
Q Consensus 415 ~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd 457 (845)
.+......+.+++...- ... .. |.++|.+.
T Consensus 181 -------~~~~~~~~~~q~I~~r~----~~~-~~-~~tsN~~~ 210 (254)
T COG1484 181 -------FSQEEADLLFQLISRRY----ESR-SL-IITSNLSF 210 (254)
T ss_pred -------CCHHHHHHHHHHHHHHH----hhc-cc-eeecCCCh
Confidence 23344556666655521 112 33 77888754
No 236
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=4.2e-07 Score=100.54 Aligned_cols=129 Identities=18% Similarity=0.215 Sum_probs=93.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------------------eEEeechhHHHhhhhhhhhhHHHHHH
Q 043051 336 IYCPKGVLLHGPPGTGKTLLAKAIAGEAGVP-----------------------FFAANGTDFVEMFVGVAASRVKDLFA 392 (845)
Q Consensus 336 ~~~PrgVLL~GPPGTGKT~LArALA~elg~p-----------------------fi~vs~sdf~~~~vG~~~~~vr~lF~ 392 (845)
.+.|.++||+||.|+||+.+|+++|+.+-+. |+.+.... .. ...+.+.+|++.+
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~--~~I~vdqiR~l~~ 98 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EG--KSITVEQIRQCNR 98 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CC--CcCCHHHHHHHHH
Confidence 4568899999999999999999999876321 22221100 00 0123456777666
Q ss_pred HHHhc----CCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCc
Q 043051 393 SARSF----APSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGR 468 (845)
Q Consensus 393 ~A~~~----aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgR 468 (845)
.+... .-.|++||++|.+ +....+.|+..|+| ++.++++|..|+.++.|-|.++|++
T Consensus 99 ~~~~~~~~~~~kV~iI~~ae~m------------~~~AaNaLLKtLEE------Pp~~t~fiL~t~~~~~lLpTI~SRC- 159 (319)
T PRK06090 99 LAQESSQLNGYRLFVIEPADAM------------NESASNALLKTLEE------PAPNCLFLLVTHNQKRLLPTIVSRC- 159 (319)
T ss_pred HHhhCcccCCceEEEecchhhh------------CHHHHHHHHHHhcC------CCCCeEEEEEECChhhChHHHHhcc-
Confidence 55332 1359999999999 45667778888777 4566899999999999999999966
Q ss_pred ccEEEEeCCCCHhHHHHHHH
Q 043051 469 FDKIVRVGLPSKDGRFAILK 488 (845)
Q Consensus 469 Fdr~I~v~~Pd~eeR~eIL~ 488 (845)
..+.|+.|+.++..+.|.
T Consensus 160 --q~~~~~~~~~~~~~~~L~ 177 (319)
T PRK06090 160 --QQWVVTPPSTAQAMQWLK 177 (319)
T ss_pred --eeEeCCCCCHHHHHHHHH
Confidence 588999999988877765
No 237
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.55 E-value=9.8e-08 Score=111.22 Aligned_cols=190 Identities=28% Similarity=0.350 Sum_probs=124.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh--cCCCeEEeechhHHH-----hhhhhh--------hhhHHHHHHHHHhcCCcEEEE
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGE--AGVPFFAANGTDFVE-----MFVGVA--------ASRVKDLFASARSFAPSIIFI 404 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~e--lg~pfi~vs~sdf~~-----~~vG~~--------~~~vr~lF~~A~~~aP~ILfI 404 (845)
-.+||.|.|||||-.|||++-.. ...||+.++|..+-+ +++|.. .+-.+..+++|.. +.+|+
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~g---GtlFl 413 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADG---GTLFL 413 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCC---CccHH
Confidence 36999999999999999999554 467999999975543 333322 2333444555433 79999
Q ss_pred cccchhccCCCCCCCCCCchHHHHHHHHHHHh-----hcCCcccCCcEEEEEEcCCCCCCChhhhccCcccE-------E
Q 043051 405 DEIDAIGSKRGGPDIGGGGAEREQGLLQILTE-----MDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDK-------I 472 (845)
Q Consensus 405 DEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~e-----mdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr-------~ 472 (845)
|||..+ .-..+..|+++|.+ ++|-. ..-.|-||+||+++- ..|.+.|||.. .
T Consensus 414 deIgd~------------p~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl---~~lv~~g~fredLyyrL~~ 477 (606)
T COG3284 414 DEIGDM------------PLALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDL---AQLVEQGRFREDLYYRLNA 477 (606)
T ss_pred HHhhhc------------hHHHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCH---HHHHHcCCchHHHHHHhcC
Confidence 999888 56789999999998 44544 344589999999877 78888899865 4
Q ss_pred EEeCCCCHhHHHHH---HHHHHhhhcccchhhhhhHHHHH-HHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 043051 473 VRVGLPSKDGRFAI---LKVHARNKYFRSEEEKDVLLQEI-AELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEA 548 (845)
Q Consensus 473 I~v~~Pd~eeR~eI---L~~~l~~~~l~~~~~~d~dl~~L-A~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~A 548 (845)
..|.+|...+|.+- |..++.......-..++..+..| +-.=+| +-++|.+++..+++.+ +...|...|+-..
T Consensus 478 ~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPG-Nirel~~v~~~~~~l~---~~g~~~~~dlp~~ 553 (606)
T COG3284 478 FVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPG-NIRELDNVIERLAALS---DGGRIRVSDLPPE 553 (606)
T ss_pred eeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcC---CCCeeEcccCCHH
Confidence 56778888777653 33333332221111122223333 323344 5668888888876554 3344666665555
Q ss_pred HHhc
Q 043051 549 LKRQ 552 (845)
Q Consensus 549 l~r~ 552 (845)
+-..
T Consensus 554 l~~~ 557 (606)
T COG3284 554 LLEE 557 (606)
T ss_pred HHhh
Confidence 5443
No 238
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.55 E-value=7.1e-07 Score=99.27 Aligned_cols=109 Identities=17% Similarity=0.276 Sum_probs=72.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHhhhhhh---hhhHHHHHHHHHhcCCcEEEEcccchhccC
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEMFVGVA---ASRVKDLFASARSFAPSIIFIDEIDAIGSK 413 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~~vG~~---~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~ 413 (845)
.+++|+||||||||+||.|+|+++ |..+++++..++...+.... .......++... ...+|+|||+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~-- 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEK-- 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCC--
Confidence 689999999999999999999987 78899999999877553321 111122233332 34699999987752
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCC-CC----CChhhhc
Q 043051 414 RGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRL-DI----LDPALLR 465 (845)
Q Consensus 414 R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~p-d~----LDpALlR 465 (845)
.+......|..++...- ..+ --+|.|||.+ .. +++.+.+
T Consensus 260 --------~t~~~~~~Lf~iin~R~----~~~-k~tIiTSNl~~~el~~~~~eri~S 303 (329)
T PRK06835 260 --------ITEFSKSELFNLINKRL----LRQ-KKMIISTNLSLEELLKTYSERISS 303 (329)
T ss_pred --------CCHHHHHHHHHHHHHHH----HCC-CCEEEECCCCHHHHHHHHhHHHHH
Confidence 24455677888887741 112 2355677653 22 4566666
No 239
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.53 E-value=1.2e-06 Score=100.52 Aligned_cols=217 Identities=14% Similarity=0.178 Sum_probs=122.6
Q ss_pred ccccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeec-
Q 043051 294 FISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANG- 372 (845)
Q Consensus 294 ~~~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~- 372 (845)
-.|.++..|.+.++|+-+..-..++++.+..+.. ...++| .+-+||+||+|||||+.++.+|.++|..++.-+.
T Consensus 70 elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~--~~~~l~---~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Np 144 (634)
T KOG1970|consen 70 ELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAE--FTPKLG---SRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNP 144 (634)
T ss_pred chhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHH--hccCCC---ceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCC
Confidence 3556678899999999876555555554441110 001122 2458999999999999999999999987765441
Q ss_pred ------------hhHHHhhhhhhhhhHHHHHHHHHh------------cCCcEEEEcccchhccCCCCCCCCCCchHHHH
Q 043051 373 ------------TDFVEMFVGVAASRVKDLFASARS------------FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQ 428 (845)
Q Consensus 373 ------------sdf~~~~vG~~~~~vr~lF~~A~~------------~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~ 428 (845)
+.+.....+.--.........+.+ .+|.+|+|||+-..... ...+..+
T Consensus 145 i~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~--------d~~~~f~ 216 (634)
T KOG1970|consen 145 INLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYR--------DDSETFR 216 (634)
T ss_pred ccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhh--------hhHHHHH
Confidence 111111111111222223333311 24669999998776432 1233444
Q ss_pred HHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhc------cCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchh--
Q 043051 429 GLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLR------KGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEE-- 500 (845)
Q Consensus 429 ~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlR------pgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~-- 500 (845)
.+++++..... ..-|++|.-++.++..++..+. ..|.+ +|.|.+-...-.++.|+..++........
T Consensus 217 evL~~y~s~g~----~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k 291 (634)
T KOG1970|consen 217 EVLRLYVSIGR----CPLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-NISFNPIAPTIMKKFLKRICRIEANKKSGIK 291 (634)
T ss_pred HHHHHHHhcCC----CcEEEEEeccccCCCcchhhhchhhhhhccCcc-eEeecCCcHHHHHHHHHHHHHHhcccccCCc
Confidence 44445554321 1213333333444444333332 23443 68888888888888888777654433211
Q ss_pred -hhhhHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 043051 501 -EKDVLLQEIAELTEDFTGAELQNILNEAGILT 532 (845)
Q Consensus 501 -~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A 532 (845)
.....++.++.. +++||+..++...+.+
T Consensus 292 ~~~~~~v~~i~~~----s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 292 VPDTAEVELICQG----SGGDIRSAINSLQLSS 320 (634)
T ss_pred CchhHHHHHHHHh----cCccHHHHHhHhhhhc
Confidence 113334445544 4559999999988876
No 240
>PRK06921 hypothetical protein; Provisional
Probab=98.53 E-value=6.4e-07 Score=96.91 Aligned_cols=113 Identities=21% Similarity=0.247 Sum_probs=67.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc----CCCeEEeechhHHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccch-hccC
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA----GVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDA-IGSK 413 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el----g~pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDa-L~~~ 413 (845)
..+++|+||||||||+||.|+|+++ |..+++++..++...+... .......++... ...+|+|||++. +.+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~~--~~dlLiIDDl~~~~~g~ 193 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRMK--KVEVLFIDDLFKPVNGK 193 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHhc--CCCEEEEeccccccCCC
Confidence 4689999999999999999999876 6788888887766543221 112222233322 356999999954 2111
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCC-CCCC---Chhhhc
Q 043051 414 RGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNR-LDIL---DPALLR 465 (845)
Q Consensus 414 R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~-pd~L---DpALlR 465 (845)
...++.....|..++...-. .+.- +|.|||. ++.| ++.+.+
T Consensus 194 ------e~~t~~~~~~lf~iin~R~~----~~k~-tIitsn~~~~el~~~~~~l~s 238 (266)
T PRK06921 194 ------PRATEWQIEQMYSVLNYRYL----NHKP-ILISSELTIDELLDIDEALGS 238 (266)
T ss_pred ------ccCCHHHHHHHHHHHHHHHH----CCCC-EEEECCCCHHHHhhhhhHHHH
Confidence 11133444567777776421 1222 4556765 3333 455555
No 241
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.52 E-value=1.8e-07 Score=95.26 Aligned_cols=100 Identities=25% Similarity=0.357 Sum_probs=64.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHhhhhh-hhhhHHHHHHHHHhcCCcEEEEcccchhccCC
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEMFVGV-AASRVKDLFASARSFAPSIIFIDEIDAIGSKR 414 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~~vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R 414 (845)
+.|++|+||||||||+||.|++.++ |.++..++.+++++..... .......++..... ..+|+|||+...
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~--~dlLilDDlG~~---- 120 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR--VDLLILDDLGYE---- 120 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT--SSCEEEETCTSS----
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc--ccEeccccccee----
Confidence 5699999999999999999998876 8899999999988764322 11223344544443 469999998653
Q ss_pred CCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCC
Q 043051 415 GGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRL 456 (845)
Q Consensus 415 ~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~p 456 (845)
..+......|.+++..-- ... -.|.|||..
T Consensus 121 ------~~~~~~~~~l~~ii~~R~----~~~--~tIiTSN~~ 150 (178)
T PF01695_consen 121 ------PLSEWEAELLFEIIDERY----ERK--PTIITSNLS 150 (178)
T ss_dssp ---------HHHHHCTHHHHHHHH----HT---EEEEEESS-
T ss_pred ------eecccccccchhhhhHhh----ccc--CeEeeCCCc
Confidence 123445566777877742 122 355588864
No 242
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=7.6e-07 Score=108.49 Aligned_cols=134 Identities=24% Similarity=0.309 Sum_probs=95.6
Q ss_pred ccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHh----
Q 043051 306 DDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEM---- 378 (845)
Q Consensus 306 ~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~---- 378 (845)
+.|+||+++...+.+.+..-+..- .+. +++-.+||.||.|+|||-||+|+|..+ .-.|+.+++++|.+-
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl--~~~--~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskli 637 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGL--KDP--NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLI 637 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhccc--CCC--CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhcc
Confidence 368999999988888776533211 011 456789999999999999999999987 467999999987651
Q ss_pred -----hhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHh-----hcCCcccCCcEE
Q 043051 379 -----FVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTE-----MDGFKVSTSQVL 448 (845)
Q Consensus 379 -----~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~e-----mdg~~~~~~~Vi 448 (845)
|+|. .....+.+..+...-+||+|||||.- +......|+|++++ -.|...+-+++|
T Consensus 638 gsp~gyvG~--e~gg~LteavrrrP~sVVLfdeIEkA------------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I 703 (898)
T KOG1051|consen 638 GSPPGYVGK--EEGGQLTEAVKRRPYSVVLFEEIEKA------------HPDVLNILLQLLDRGRLTDSHGREVDFKNAI 703 (898)
T ss_pred CCCcccccc--hhHHHHHHHHhcCCceEEEEechhhc------------CHHHHHHHHHHHhcCccccCCCcEeeccceE
Confidence 2332 22334555555555589999999986 55677788888876 223334556799
Q ss_pred EEEEcCCCC
Q 043051 449 VIGATNRLD 457 (845)
Q Consensus 449 VIaaTN~pd 457 (845)
||.|+|.-.
T Consensus 704 ~IMTsn~~~ 712 (898)
T KOG1051|consen 704 FIMTSNVGS 712 (898)
T ss_pred EEEecccch
Confidence 999998644
No 243
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=3e-06 Score=95.75 Aligned_cols=204 Identities=20% Similarity=0.238 Sum_probs=128.8
Q ss_pred ccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeEEeechhHHH---
Q 043051 306 DDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA-----GVPFFAANGTDFVE--- 377 (845)
Q Consensus 306 ~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el-----g~pfi~vs~sdf~~--- 377 (845)
..+.|.+.-+..+++++.. .+...-+.++++.|-||||||.+...+-... +...++++|..+.+
T Consensus 150 ~~l~gRe~e~~~v~~F~~~--------hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSL--------HLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred CCccchHHHHHHHHHHHHh--------hhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHH
Confidence 4678888777777666543 1223346789999999999999998774433 22447888875321
Q ss_pred -------hh----hhh-hhhhHHHHHHHH-HhcC-CcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCccc
Q 043051 378 -------MF----VGV-AASRVKDLFASA-RSFA-PSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVS 443 (845)
Q Consensus 378 -------~~----vG~-~~~~vr~lF~~A-~~~a-P~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~ 443 (845)
.+ ++. ........|+.- .... +-++++||+|.|+.+. +.+|+ .|-+++.. .
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~------------~~vLy-~lFewp~l--p 286 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS------------QTVLY-TLFEWPKL--P 286 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc------------cceee-eehhcccC--C
Confidence 11 111 112223334433 2223 6788999999997432 12233 33344433 3
Q ss_pred CCcEEEEEEcCCCCCCChhhhcc----CcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHH
Q 043051 444 TSQVLVIGATNRLDILDPALLRK----GRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGA 519 (845)
Q Consensus 444 ~~~ViVIaaTN~pd~LDpALlRp----gRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSga 519 (845)
..++++|+.+|..|.-|..|.|- +--...+.|++++.++..+||...+....... .....++..|+...|.||
T Consensus 287 ~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~--~~~~Aie~~ArKvaa~SG- 363 (529)
T KOG2227|consen 287 NSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSI--FLNAAIELCARKVAAPSG- 363 (529)
T ss_pred cceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccc--cchHHHHHHHHHhccCch-
Confidence 45689999999988766555431 11234889999999999999999887765432 234678888999999888
Q ss_pred HHHH---HHHHHHHHHHHc
Q 043051 520 ELQN---ILNEAGILTARK 535 (845)
Q Consensus 520 DL~~---LvneAal~A~r~ 535 (845)
|++. +|+.|.-++...
T Consensus 364 DlRkaLdv~R~aiEI~E~e 382 (529)
T KOG2227|consen 364 DLRKALDVCRRAIEIAEIE 382 (529)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5554 555555555443
No 244
>PF13173 AAA_14: AAA domain
Probab=98.46 E-value=1.4e-06 Score=83.54 Aligned_cols=118 Identities=24% Similarity=0.249 Sum_probs=70.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC--CCeEEeechhHHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCC
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAG--VPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGP 417 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg--~pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~ 417 (845)
+.++|+||.|||||++++.+++... ..++++++.+........ .. +.+.+.......+.+||||||+.+-
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~i~iDEiq~~~------ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLAD-PD-LLEYFLELIKPGKKYIFIDEIQYLP------ 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhh-hh-hHHHHHHhhccCCcEEEEehhhhhc------
Confidence 4689999999999999999999876 788888887654421111 01 2233332222256899999999981
Q ss_pred CCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCC----ChhhhccCcccEEEEeCCCCHhH
Q 043051 418 DIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDIL----DPALLRKGRFDKIVRVGLPSKDG 482 (845)
Q Consensus 418 ~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~L----DpALlRpgRFdr~I~v~~Pd~ee 482 (845)
.....+..+...- .++-+|.|+.....+ ...+ +||.. .+.+.+.+..|
T Consensus 75 -------~~~~~lk~l~d~~-------~~~~ii~tgS~~~~l~~~~~~~l--~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 75 -------DWEDALKFLVDNG-------PNIKIILTGSSSSLLSKDIAESL--AGRVI-EIELYPLSFRE 126 (128)
T ss_pred -------cHHHHHHHHHHhc-------cCceEEEEccchHHHhhcccccC--CCeEE-EEEECCCCHHH
Confidence 2344444444431 123444444333333 2223 35764 57777777665
No 245
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.40 E-value=2.4e-06 Score=99.89 Aligned_cols=163 Identities=23% Similarity=0.276 Sum_probs=92.6
Q ss_pred cccccHHHHHHHHHHHHHhhCcHHHhhcC-CCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhhhhhhhh
Q 043051 307 DFAGQEYIKRELQEIVRILKNDEEFQNKG-IYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAAS 385 (845)
Q Consensus 307 dVvG~de~k~eL~eiv~~Lk~p~~~~~~g-~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~vG~~~~ 385 (845)
.|.|+|.+|+-|.-.+--- ....+...| .+---+|||+|.||||||.+.+.+++-+..-.+ .||-. +.-+|.++.
T Consensus 430 sIye~edvKkglLLqLfGG-t~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~y-TSGkG--sSavGLTay 505 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGG-TRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVY-TSGKG--SSAVGLTAY 505 (804)
T ss_pred hhhcccchhhhHHHHHhcC-CcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCccee-ecCCc--cchhcceee
Confidence 5778888888764322111 112222222 233458999999999999999999987754333 22211 111222111
Q ss_pred h-----HHHHHHHH---HhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhh------cCC-cccCCcEEEE
Q 043051 386 R-----VKDLFASA---RSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEM------DGF-KVSTSQVLVI 450 (845)
Q Consensus 386 ~-----vr~lF~~A---~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~em------dg~-~~~~~~ViVI 450 (845)
- -+.+.-+. .....+|.+|||+|.+ ++.....|.+.+++- .|. ..-+.+.-||
T Consensus 506 Vtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM------------~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVL 573 (804)
T KOG0478|consen 506 VTKDPDTRQLVLESGALVLSDNGICCIDEFDKM------------SDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVL 573 (804)
T ss_pred EEecCccceeeeecCcEEEcCCceEEchhhhhh------------hHHHHHHHHHHHHHhhhhHhhcceeeeccccceee
Confidence 1 11111111 1123579999999999 334456666666551 111 1123346799
Q ss_pred EEcCCCCC-------------CChhhhccCcccEEE-EeCCCCHhHHHHHH
Q 043051 451 GATNRLDI-------------LDPALLRKGRFDKIV-RVGLPSKDGRFAIL 487 (845)
Q Consensus 451 aaTN~pd~-------------LDpALlRpgRFdr~I-~v~~Pd~eeR~eIL 487 (845)
|+.|+... |+|.|++ |||.++ -++.||...=+.+-
T Consensus 574 AaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La 622 (804)
T KOG0478|consen 574 AAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLA 622 (804)
T ss_pred eeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHH
Confidence 99995432 7899999 999754 45777776333333
No 246
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.39 E-value=2.6e-06 Score=101.71 Aligned_cols=228 Identities=21% Similarity=0.242 Sum_probs=125.4
Q ss_pred cccccccHHHHHHHHHHHHHhhCcHHHhhcC--CCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEE-eechhHHHhhhh
Q 043051 305 FDDFAGQEYIKRELQEIVRILKNDEEFQNKG--IYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFA-ANGTDFVEMFVG 381 (845)
Q Consensus 305 F~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g--~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~-vs~sdf~~~~vG 381 (845)
.-.|.|++.+|+.+.-.+ +....+...-| .+---+|||.|.||||||.|.|.+++-+-.-++. ..++ .-+|
T Consensus 285 aPsIyG~e~VKkAilLqL--fgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgs----s~~G 358 (682)
T COG1241 285 APSIYGHEDVKKAILLQL--FGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGS----SAAG 358 (682)
T ss_pred cccccCcHHHHHHHHHHh--cCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccc----cccC
Confidence 446788888888764322 22222111111 1223579999999999999999999887554442 2222 2244
Q ss_pred hhhhhHHHHH--HHH------HhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHh----hc--CCc-ccCCc
Q 043051 382 VAASRVKDLF--ASA------RSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTE----MD--GFK-VSTSQ 446 (845)
Q Consensus 382 ~~~~~vr~lF--~~A------~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~e----md--g~~-~~~~~ 446 (845)
.++.-+++-. ++. ....++|++|||+|.+ ++.....+...+++ +. |.. .-+.+
T Consensus 359 LTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm------------~~~dr~aihEaMEQQtIsIaKAGI~atLnAR 426 (682)
T COG1241 359 LTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKM------------NEEDRVAIHEAMEQQTISIAKAGITATLNAR 426 (682)
T ss_pred ceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCC------------ChHHHHHHHHHHHhcEeeecccceeeecchh
Confidence 4444444433 111 1124689999999998 22233334333333 11 110 11234
Q ss_pred EEEEEEcCCCCC-------------CChhhhccCcccEEEEe-CCCCHhHHHHHHHHHHhhhcccc--------------
Q 043051 447 VLVIGATNRLDI-------------LDPALLRKGRFDKIVRV-GLPSKDGRFAILKVHARNKYFRS-------------- 498 (845)
Q Consensus 447 ViVIaaTN~pd~-------------LDpALlRpgRFdr~I~v-~~Pd~eeR~eIL~~~l~~~~l~~-------------- 498 (845)
.-|+||+|+... |++.|++ |||..+.+ +.|+.+.=..+..+.+..+....
T Consensus 427 csvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~ 504 (682)
T COG1241 427 CSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVE 504 (682)
T ss_pred hhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccc
Confidence 678899998652 6899999 99986544 46666533333332222211000
Q ss_pred -------------------hhhhhhHHHHHHH-----H----------ccCCcHHHHHHHHHHHHHHHHHcCCCccCHHH
Q 043051 499 -------------------EEEKDVLLQEIAE-----L----------TEDFTGAELQNILNEAGILTARKDLDYIGQEE 544 (845)
Q Consensus 499 -------------------~~~~d~dl~~LA~-----~----------t~GfSgaDL~~LvneAal~A~r~~~~~It~ed 544 (845)
+...+...+.|.. + +...|.++|..+++-|-..|..+-++.|+.+|
T Consensus 505 ~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD 584 (682)
T COG1241 505 ERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEED 584 (682)
T ss_pred cCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHH
Confidence 0001111111111 0 12256677777777777777777777777777
Q ss_pred HHHHHHhc
Q 043051 545 LLEALKRQ 552 (845)
Q Consensus 545 l~~Al~r~ 552 (845)
+.+|++-+
T Consensus 585 ~~eAi~lv 592 (682)
T COG1241 585 VDEAIRLV 592 (682)
T ss_pred HHHHHHHH
Confidence 77777655
No 247
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.38 E-value=1.5e-06 Score=94.31 Aligned_cols=138 Identities=22% Similarity=0.356 Sum_probs=79.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCC-C--eEEeechhHHHhhhhhhhhhHHHHHHHH-----------HhcCCcEEEEc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAGV-P--FFAANGTDFVEMFVGVAASRVKDLFASA-----------RSFAPSIIFID 405 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg~-p--fi~vs~sdf~~~~vG~~~~~vr~lF~~A-----------~~~aP~ILfID 405 (845)
+++||+||+|||||++++.+-..+.- . ...++++... +...+..+++.. .....+|+|||
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 58999999999999999988766532 2 2233443221 222333332222 11124699999
Q ss_pred ccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccC-------CcEEEEEEcCCCC---CCChhhhccCcccEEEEe
Q 043051 406 EIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVST-------SQVLVIGATNRLD---ILDPALLRKGRFDKIVRV 475 (845)
Q Consensus 406 EIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~-------~~ViVIaaTN~pd---~LDpALlRpgRFdr~I~v 475 (845)
|++.-.... -+.......|-|+++. .|+.... .++.+|||.|++. .+++.++| .|. ++.+
T Consensus 108 DlN~p~~d~------ygtq~~iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f~-i~~~ 177 (272)
T PF12775_consen 108 DLNMPQPDK------YGTQPPIELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HFN-ILNI 177 (272)
T ss_dssp TTT-S---T------TS--HHHHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TEE-EEE-
T ss_pred ccCCCCCCC------CCCcCHHHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--heE-EEEe
Confidence 998763221 1122233444455443 3443321 2488889988643 37888887 664 8899
Q ss_pred CCCCHhHHHHHHHHHHhh
Q 043051 476 GLPSKDGRFAILKVHARN 493 (845)
Q Consensus 476 ~~Pd~eeR~eIL~~~l~~ 493 (845)
+.|+.+....|+...+..
T Consensus 178 ~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 178 PYPSDESLNTIFSSILQS 195 (272)
T ss_dssp ---TCCHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHhh
Confidence 999999999998887754
No 248
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.34 E-value=1.2e-07 Score=105.48 Aligned_cols=225 Identities=21% Similarity=0.240 Sum_probs=113.9
Q ss_pred cccccHHHHHHHHHH-HHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhhhhhhhh
Q 043051 307 DFAGQEYIKRELQEI-VRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAAS 385 (845)
Q Consensus 307 dVvG~de~k~eL~ei-v~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~vG~~~~ 385 (845)
.|.|.+.+|..+.-. +........ .....+-.-++||+|.||||||.|.+.+++-+...+ ++++..-. ..|.++.
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~-~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s--~~gLta~ 100 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDP-DGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSS--AAGLTAS 100 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCC-T-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGST--CCCCCEE
T ss_pred cCcCcHHHHHHHHHHHHhccccccc-cccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcc--cCCccce
Confidence 577888888765321 111111000 000122345899999999999999998865543333 33332210 0111111
Q ss_pred ----------hHH-HHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhh------cCCc-ccCCcE
Q 043051 386 ----------RVK-DLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEM------DGFK-VSTSQV 447 (845)
Q Consensus 386 ----------~vr-~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~em------dg~~-~~~~~V 447 (845)
.+. ..+-.| ..+|++|||+|.+ .......|.+.++.- .|.. .-+.+.
T Consensus 101 ~~~d~~~~~~~leaGalvla---d~GiccIDe~dk~------------~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~ 165 (331)
T PF00493_consen 101 VSRDPVTGEWVLEAGALVLA---DGGICCIDEFDKM------------KEDDRDALHEAMEQQTISIAKAGIVTTLNARC 165 (331)
T ss_dssp ECCCGGTSSECEEE-HHHHC---TTSEEEECTTTT--------------CHHHHHHHHHHHCSCEEECTSSSEEEEE---
T ss_pred eccccccceeEEeCCchhcc---cCceeeecccccc------------cchHHHHHHHHHHcCeeccchhhhcccccchh
Confidence 111 223333 3489999999998 223345555555540 0110 112347
Q ss_pred EEEEEcCCCC-------------CCChhhhccCcccEEEEe-CCCCHhHHHHHHHHHHhhhcccc---------------
Q 043051 448 LVIGATNRLD-------------ILDPALLRKGRFDKIVRV-GLPSKDGRFAILKVHARNKYFRS--------------- 498 (845)
Q Consensus 448 iVIaaTN~pd-------------~LDpALlRpgRFdr~I~v-~~Pd~eeR~eIL~~~l~~~~l~~--------------- 498 (845)
-|+||+|+.. .+++.|++ |||..+.+ +.|+.+.-..+-+..++......
T Consensus 166 svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~ 243 (331)
T PF00493_consen 166 SVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPIS 243 (331)
T ss_dssp EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-
T ss_pred hhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEeccccccccccccccccCCccC
Confidence 8999999765 37889999 99987665 56665554444443332211100
Q ss_pred ----------------hhhhhhHHHHHHHH-------------ccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 043051 499 ----------------EEEKDVLLQEIAEL-------------TEDFTGAELQNILNEAGILTARKDLDYIGQEELLEAL 549 (845)
Q Consensus 499 ----------------~~~~d~dl~~LA~~-------------t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al 549 (845)
+..++...+.|... ....+.+.|..+++-|-..|..+.++.|+.+|+..|+
T Consensus 244 ~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai 323 (331)
T PF00493_consen 244 EDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAI 323 (331)
T ss_dssp HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHH
Confidence 00001111222211 1234567888999999889999999999999999998
Q ss_pred Hhc
Q 043051 550 KRQ 552 (845)
Q Consensus 550 ~r~ 552 (845)
.-.
T Consensus 324 ~L~ 326 (331)
T PF00493_consen 324 RLF 326 (331)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 249
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.27 E-value=3.2e-06 Score=98.20 Aligned_cols=233 Identities=18% Similarity=0.230 Sum_probs=128.7
Q ss_pred CcccccccHHHHHHHHHHHHHhhCcHHHh--hcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhhhh
Q 043051 304 TFDDFAGQEYIKRELQEIVRILKNDEEFQ--NKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVG 381 (845)
Q Consensus 304 tF~dVvG~de~k~eL~eiv~~Lk~p~~~~--~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~vG 381 (845)
-|..|.|++.+|.-+.-.+ +-.-.++. ...++---+|+|+|.||||||-+.+++++-+-..+|. +|.. +.-.|
T Consensus 343 l~PsIyGhe~VK~GilL~L--fGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYt-sGka--SSaAG 417 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLSL--FGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYT-SGKA--SSAAG 417 (764)
T ss_pred hCccccchHHHHhhHHHHH--hCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEe-cCcc--ccccc
Confidence 4678899999998764332 21112211 2223334589999999999999999999877555443 2221 11123
Q ss_pred hhhhhHHHH--HH---HH---HhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHh----h--cCCc-ccCCc
Q 043051 382 VAASRVKDL--FA---SA---RSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTE----M--DGFK-VSTSQ 446 (845)
Q Consensus 382 ~~~~~vr~l--F~---~A---~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~e----m--dg~~-~~~~~ 446 (845)
.+++-+++- ++ .| .-...+|..|||+|.+.- .-+.++...+++ + .|.. .-+.+
T Consensus 418 LTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~------------~dqvAihEAMEQQtISIaKAGv~aTLnAR 485 (764)
T KOG0480|consen 418 LTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDV------------KDQVAIHEAMEQQTISIAKAGVVATLNAR 485 (764)
T ss_pred ceEEEEecCCCCceeeecCcEEEccCceEEechhcccCh------------HhHHHHHHHHHhheehheecceEEeecch
Confidence 232222210 00 01 011347999999999932 123344443333 0 0111 11234
Q ss_pred EEEEEEcCCCCC-------------CChhhhccCcccEEE-EeCCCCHhHHHHHHHHHHhhhccc---------------
Q 043051 447 VLVIGATNRLDI-------------LDPALLRKGRFDKIV-RVGLPSKDGRFAILKVHARNKYFR--------------- 497 (845)
Q Consensus 447 ViVIaaTN~pd~-------------LDpALlRpgRFdr~I-~v~~Pd~eeR~eIL~~~l~~~~l~--------------- 497 (845)
.-||||+|+... ++++|++ |||..+ -++-|+...=..|-++.+.....-
T Consensus 486 tSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~v 563 (764)
T KOG0480|consen 486 TSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQV 563 (764)
T ss_pred hhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHH
Confidence 568899987543 6899999 999743 557777765555544444322110
Q ss_pred -------------chhhh-hhHHH---HHH--------HHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 498 -------------SEEEK-DVLLQ---EIA--------ELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 498 -------------~~~~~-d~dl~---~LA--------~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
..... ....+ .+- +-+.+.|-++|+.+++-+-..|.-.-.+.+|.+|+++|++-.
T Consensus 564 rkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLl 643 (764)
T KOG0480|consen 564 RKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELL 643 (764)
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHH
Confidence 00000 00000 000 012255677888888877667766666778888888887766
Q ss_pred ccc
Q 043051 553 KGT 555 (845)
Q Consensus 553 k~~ 555 (845)
+.+
T Consensus 644 k~S 646 (764)
T KOG0480|consen 644 KKS 646 (764)
T ss_pred Hhh
Confidence 543
No 250
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=8.1e-06 Score=89.06 Aligned_cols=122 Identities=15% Similarity=0.189 Sum_probs=84.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeec--------hhHHHhh-hh----hhhhhHHHHHHHHHhc----C
Q 043051 336 IYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANG--------TDFVEMF-VG----VAASRVKDLFASARSF----A 398 (845)
Q Consensus 336 ~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~--------sdf~~~~-vG----~~~~~vr~lF~~A~~~----a 398 (845)
.+.|..+||+||+|+||+.+|.++|..+-+.--.-+| .|+...+ .| .+.+.+|++.+.+... .
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~ 95 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESP 95 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCC
Confidence 3467899999999999999999999987442100011 1110000 11 2355677776666432 1
Q ss_pred CcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCC
Q 043051 399 PSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLP 478 (845)
Q Consensus 399 P~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~P 478 (845)
-.|++||++|.+ +.+..+.|+..|+| ++.++++|..|+.++.|.|.++++| ..+.|+++
T Consensus 96 ~kv~ii~~ad~m------------t~~AaNaLLK~LEE------Pp~~~~fiL~~~~~~~ll~TI~SRc---q~~~~~~~ 154 (290)
T PRK05917 96 YKIYIIHEADRM------------TLDAISAFLKVLED------PPQHGVIILTSAKPQRLPPTIRSRS---LSIHIPME 154 (290)
T ss_pred ceEEEEechhhc------------CHHHHHHHHHHhhc------CCCCeEEEEEeCChhhCcHHHHhcc---eEEEccch
Confidence 259999999999 56678888888877 4566899999999999999999955 46667654
No 251
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.18 E-value=4.8e-06 Score=78.96 Aligned_cols=72 Identities=25% Similarity=0.410 Sum_probs=45.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc--------CCCeEEeechhHH------Hhh---hh------hhhhhHHHHHHHH-
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA--------GVPFFAANGTDFV------EMF---VG------VAASRVKDLFASA- 394 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el--------g~pfi~vs~sdf~------~~~---vG------~~~~~vr~lF~~A- 394 (845)
.+.++++||||+|||++++.++... ..+++.+++.... ... .+ .+...+.+.+...
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3578999999999999999999987 7788888776433 111 11 1223333333333
Q ss_pred HhcCCcEEEEcccchh
Q 043051 395 RSFAPSIIFIDEIDAI 410 (845)
Q Consensus 395 ~~~aP~ILfIDEIDaL 410 (845)
......+|+|||+|.+
T Consensus 84 ~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHCTEEEEEEETTHHH
T ss_pred HhcCCeEEEEeChHhc
Confidence 3333359999999998
No 252
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.15 E-value=6.7e-05 Score=79.67 Aligned_cols=190 Identities=18% Similarity=0.191 Sum_probs=117.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC---CCeEEeec-----hhHHHhhhhh------------hhhhHHHHHHHHH-hcCC
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAG---VPFFAANG-----TDFVEMFVGV------------AASRVKDLFASAR-SFAP 399 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg---~pfi~vs~-----sdf~~~~vG~------------~~~~vr~lF~~A~-~~aP 399 (845)
-+.++|+-|||||++.||+....+ +-.++++. +.+.+.++-. .+..-+.+.+..+ ...|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 367999999999999997766553 22333433 2333322221 1122233333333 3456
Q ss_pred cEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCC-Ch---hhhccCcccEEEEe
Q 043051 400 SIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDIL-DP---ALLRKGRFDKIVRV 475 (845)
Q Consensus 400 ~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~L-Dp---ALlRpgRFdr~I~v 475 (845)
-++++||.+.+.. .. -.-+.++.+.+.-....-.++.|+-..--..+ -+ .+-. |++-.|.+
T Consensus 133 v~l~vdEah~L~~------------~~-le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~--R~~ir~~l 197 (269)
T COG3267 133 VVLMVDEAHDLND------------SA-LEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQ--RIDIRIEL 197 (269)
T ss_pred eEEeehhHhhhCh------------hH-HHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhh--eEEEEEec
Confidence 8999999999832 11 22234444432211122225555543211111 11 2222 67666788
Q ss_pred CCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Q 043051 476 GLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELL 546 (845)
Q Consensus 476 ~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~ 546 (845)
++.+.++-...++.+++..+...+...+..+..++..+.| .++-+.++|..|...|...+.+.|+...+.
T Consensus 198 ~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 198 PPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred CCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 8889998999999999887665555567788889999998 688899999999888888888888876654
No 253
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.13 E-value=1.4e-05 Score=90.02 Aligned_cols=103 Identities=19% Similarity=0.262 Sum_probs=58.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCC-CeEEeechhHHHhhhh------hhhhhHHHHHHHHHhcCCcEEEEcccc
Q 043051 336 IYCPKGVLLHGPPGTGKTLLAKAIAGEAGV-PFFAANGTDFVEMFVG------VAASRVKDLFASARSFAPSIIFIDEID 408 (845)
Q Consensus 336 ~~~PrgVLL~GPPGTGKT~LArALA~elg~-pfi~vs~sdf~~~~vG------~~~~~vr~lF~~A~~~aP~ILfIDEID 408 (845)
...|+|++||||+|+|||+|.-.+...+.. .-..+.-.+|+...-. ....-+..+.+...+ .-.+|+|||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~-~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAK-ESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHh-cCCEEEEeeee
Confidence 457999999999999999999999887754 1122222233321100 011223333333322 22499999987
Q ss_pred hhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCC
Q 043051 409 AIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRL 456 (845)
Q Consensus 409 aL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~p 456 (845)
-- +. ++ .-.|..|+..+- . .++++|+|+|++
T Consensus 138 V~-------Di--aD---Amil~rLf~~l~----~-~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 VT-------DI--AD---AMILKRLFEALF----K-RGVVLVATSNRP 168 (362)
T ss_pred cc-------ch--hH---HHHHHHHHHHHH----H-CCCEEEecCCCC
Confidence 63 11 11 223344554431 1 339999999975
No 254
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.12 E-value=1.1e-05 Score=91.43 Aligned_cols=232 Identities=22% Similarity=0.239 Sum_probs=126.9
Q ss_pred cccccHHHHHHHHHHHHHhhCcHHHhhcC--CCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEee-chhHHHhhhhhh
Q 043051 307 DFAGQEYIKRELQEIVRILKNDEEFQNKG--IYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAAN-GTDFVEMFVGVA 383 (845)
Q Consensus 307 dVvG~de~k~eL~eiv~~Lk~p~~~~~~g--~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs-~sdf~~~~vG~~ 383 (845)
+|.|++.+|+.|.-++--- +.+-..-| ++---+|+|.|.||+-||-|.+.+.+-+-...|..- ||. -+|.+
T Consensus 343 EIyGheDVKKaLLLlLVGg--vd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSS----GVGLT 416 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGG--VDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSS----GVGLT 416 (721)
T ss_pred hhccchHHHHHHHHHhhCC--CCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCC----ccccc
Confidence 6899999999987655332 22111123 333457999999999999999999987765555432 222 24444
Q ss_pred hhhHHHHHHHH--------HhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcc-cCCcEEEEEEcC
Q 043051 384 ASRVKDLFASA--------RSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKV-STSQVLVIGATN 454 (845)
Q Consensus 384 ~~~vr~lF~~A--------~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~-~~~~ViVIaaTN 454 (845)
++-+++-...- --...+|.+|||+|.+...- ....|...+|.-..+-.. |+.. -+.+.-|+||.|
T Consensus 417 AAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~D----RtAIHEVMEQQTISIaKA--GI~TtLNAR~sILaAAN 490 (721)
T KOG0482|consen 417 AAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESD----RTAIHEVMEQQTISIAKA--GINTTLNARTSILAAAN 490 (721)
T ss_pred hhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhh----hHHHHHHHHhhhhhhhhh--ccccchhhhHHhhhhcC
Confidence 44433311110 00124799999999994321 011122222211111111 2111 133567889998
Q ss_pred CCCC-------------CChhhhccCcccEEEE-eCCCCHhHHHHHHHHHHhhhcccc--h----h-h------------
Q 043051 455 RLDI-------------LDPALLRKGRFDKIVR-VGLPSKDGRFAILKVHARNKYFRS--E----E-E------------ 501 (845)
Q Consensus 455 ~pd~-------------LDpALlRpgRFdr~I~-v~~Pd~eeR~eIL~~~l~~~~l~~--~----~-~------------ 501 (845)
+... |++||++ |||..+- .+.||.+.-..+-++...-+.... . . +
T Consensus 491 PayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak 568 (721)
T KOG0482|consen 491 PAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAK 568 (721)
T ss_pred ccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHh
Confidence 6432 7999999 9997543 357776655444433221110000 0 0 0
Q ss_pred ------hhhHHHHHHH----------Hc---cCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 502 ------KDVLLQEIAE----------LT---EDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 502 ------~d~dl~~LA~----------~t---~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
++...+.+.. .. .-.|++-|-.+++-+..+|..+-.+.|..+|+.+|+.-.
T Consensus 569 ~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLm 638 (721)
T KOG0482|consen 569 RKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLM 638 (721)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 0000111110 00 123677777888877777777777888888888887654
No 255
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=8.5e-05 Score=79.79 Aligned_cols=120 Identities=13% Similarity=0.066 Sum_probs=81.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeech--------------hHHHhh---hhhhhhhHHHHHHHHHh----
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGT--------------DFVEMF---VGVAASRVKDLFASARS---- 396 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~s--------------df~~~~---vG~~~~~vr~lF~~A~~---- 396 (845)
+|..+||+||+|+||..+|.++|+.+-+.--.-.|. |+.-.+ ...+.+.+|++.+....
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e 85 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVE 85 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchh
Confidence 578899999999999999999998763211000111 111000 01244566666655422
Q ss_pred -cCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEe
Q 043051 397 -FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRV 475 (845)
Q Consensus 397 -~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v 475 (845)
....|++|+++|.+ +.+..+.|+.+|+| ++.++++|..|+.++.+.|.+++|+ ..+.+
T Consensus 86 ~~~~KV~II~~ae~m------------~~~AaNaLLK~LEE------Pp~~t~fiLit~~~~~lLpTI~SRC---q~~~~ 144 (261)
T PRK05818 86 SNGKKIYIIYGIEKL------------NKQSANSLLKLIEE------PPKNTYGIFTTRNENNILNTILSRC---VQYVV 144 (261)
T ss_pred cCCCEEEEeccHhhh------------CHHHHHHHHHhhcC------CCCCeEEEEEECChHhCchHhhhhe---eeeec
Confidence 12369999999999 45667777777776 5666899999999999999999954 35666
Q ss_pred CCC
Q 043051 476 GLP 478 (845)
Q Consensus 476 ~~P 478 (845)
+.+
T Consensus 145 ~~~ 147 (261)
T PRK05818 145 LSK 147 (261)
T ss_pred CCh
Confidence 655
No 256
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=7e-05 Score=82.44 Aligned_cols=125 Identities=14% Similarity=0.161 Sum_probs=89.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCC-----------C--eEEee--chhHHHhhhhhhhhhHHHHHHHHHhc----
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIAGEAGV-----------P--FFAAN--GTDFVEMFVGVAASRVKDLFASARSF---- 397 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA~elg~-----------p--fi~vs--~sdf~~~~vG~~~~~vr~lF~~A~~~---- 397 (845)
+.+...||+|+.|+||+.+|+++++.+-+ | ++.++ +.. .+...++++.+.....
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~-------i~vd~Ir~l~~~~~~~~~~~ 88 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKD-------LSKSEFLSAINKLYFSSFVQ 88 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCc-------CCHHHHHHHHHHhccCCccc
Confidence 34678999999999999999999988622 2 22222 211 2335667766665321
Q ss_pred -CCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeC
Q 043051 398 -APSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVG 476 (845)
Q Consensus 398 -aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~ 476 (845)
...|++||++|.+ +....+.|+..|++ ++..+++|..|+.++.|-|.++++| .++.|.
T Consensus 89 ~~~KvvII~~~e~m------------~~~a~NaLLK~LEE------Pp~~t~~il~~~~~~kll~TI~SRc---~~~~f~ 147 (299)
T PRK07132 89 SQKKILIIKNIEKT------------SNSLLNALLKTIEE------PPKDTYFLLTTKNINKVLPTIVSRC---QVFNVK 147 (299)
T ss_pred CCceEEEEeccccc------------CHHHHHHHHHHhhC------CCCCeEEEEEeCChHhChHHHHhCe---EEEECC
Confidence 3469999999888 34556677777776 3445777777778899999999976 689999
Q ss_pred CCCHhHHHHHHHH
Q 043051 477 LPSKDGRFAILKV 489 (845)
Q Consensus 477 ~Pd~eeR~eIL~~ 489 (845)
+|+.++..+.|..
T Consensus 148 ~l~~~~l~~~l~~ 160 (299)
T PRK07132 148 EPDQQKILAKLLS 160 (299)
T ss_pred CCCHHHHHHHHHH
Confidence 9998888776653
No 257
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.09 E-value=8e-05 Score=95.87 Aligned_cols=181 Identities=20% Similarity=0.252 Sum_probs=101.7
Q ss_pred CCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCe---EEeech----
Q 043051 301 TGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPF---FAANGT---- 373 (845)
Q Consensus 301 ~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pf---i~vs~s---- 373 (845)
+...|++++|.+...+++..++.. +....+-+-|+||+|+||||||+++++....+| +.++..
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 456799999999888887776632 222356788999999999999999988765433 111110
Q ss_pred ---hHH-------HhhhhhhhhhHH-------------HHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHH
Q 043051 374 ---DFV-------EMFVGVAASRVK-------------DLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGL 430 (845)
Q Consensus 374 ---df~-------~~~vG~~~~~vr-------------~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L 430 (845)
.+. ..........+. ..........+.+|++|+++.. . .+
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~--------------~---~l 311 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ--------------D---VL 311 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH--------------H---HH
Confidence 000 000000000001 1112222345678999998653 1 12
Q ss_pred HHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHH
Q 043051 431 LQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIA 510 (845)
Q Consensus 431 ~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA 510 (845)
..+....+.+ ..+ ..||.||.. ..+++....++.+.++.|+.++-.++|..++....... ..-......++
T Consensus 312 ~~L~~~~~~~--~~G-srIIiTTrd-----~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~-~~~~~l~~~iv 382 (1153)
T PLN03210 312 DALAGQTQWF--GSG-SRIIVITKD-----KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPP-DGFMELASEVA 382 (1153)
T ss_pred HHHHhhCccC--CCC-cEEEEEeCc-----HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHH
Confidence 2222222222 123 344556653 34444345678999999999999999998875433221 11122345677
Q ss_pred HHccCCc
Q 043051 511 ELTEDFT 517 (845)
Q Consensus 511 ~~t~GfS 517 (845)
+.+.|..
T Consensus 383 ~~c~GLP 389 (1153)
T PLN03210 383 LRAGNLP 389 (1153)
T ss_pred HHhCCCc
Confidence 7777754
No 258
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.06 E-value=1.8e-05 Score=76.88 Aligned_cols=110 Identities=22% Similarity=0.196 Sum_probs=61.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHhhh----------------------hh--hhhhHHHHHHHH
Q 043051 342 VLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEMFV----------------------GV--AASRVKDLFASA 394 (845)
Q Consensus 342 VLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~~v----------------------G~--~~~~vr~lF~~A 394 (845)
++|+||||+|||+++..++..+ +.++++++......... .. .....+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 56777766543221100 00 000111223445
Q ss_pred HhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCC
Q 043051 395 RSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLD 457 (845)
Q Consensus 395 ~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd 457 (845)
....|.+|+|||+..+...... ...+........+..++..+.. .++.+|++++...
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~-----~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALRE-IREGYPGELDEELRELLERARK-----GGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHH-HHhcCChHHHHHHHHHHHHHhc-----CCceEEEEEecCC
Confidence 5667889999999998643210 0011223334455555555422 2355555555443
No 259
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.05 E-value=0.0001 Score=79.45 Aligned_cols=177 Identities=19% Similarity=0.230 Sum_probs=92.7
Q ss_pred HHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHh--cCCCe---EEeech------hHHHhh---hh
Q 043051 316 RELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGE--AGVPF---FAANGT------DFVEMF---VG 381 (845)
Q Consensus 316 ~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~e--lg~pf---i~vs~s------df~~~~---vG 381 (845)
.++.++.+.|.... ...+-|.|+|++|+|||+||+.+++. ....| +.++.+ ++.... .+
T Consensus 3 ~~~~~l~~~L~~~~-------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 3 KEIEKLKDWLLDNS-------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp HHHHHHHHHHHTTT-------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCCC-------CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccc
Confidence 34556666665422 23567999999999999999999977 33322 223222 111111 11
Q ss_pred hh---------hhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEE
Q 043051 382 VA---------ASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGA 452 (845)
Q Consensus 382 ~~---------~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaa 452 (845)
.. ...+...+.......+++|+||+++... .+..+...+.. ...+..||.|
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~-----------------~~~~l~~~~~~---~~~~~kilvT 135 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE-----------------DLEELREPLPS---FSSGSKILVT 135 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH-----------------HH-------HC---HHSS-EEEEE
T ss_pred ccccccccccccccccccchhhhccccceeeeeeecccc-----------------ccccccccccc---cccccccccc
Confidence 11 1222333333434458999999987751 12122211111 1122456667
Q ss_pred cCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHH
Q 043051 453 TNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNI 524 (845)
Q Consensus 453 TN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~L 524 (845)
|....... ... .-+..+.++..+.++-.++|...+.................|++.+.| .+-.|.-+
T Consensus 136 TR~~~v~~-~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~ 202 (287)
T PF00931_consen 136 TRDRSVAG-SLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLI 202 (287)
T ss_dssp ESCGGGGT-THH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred cccccccc-ccc---cccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 76543221 111 114689999999999999999887655411111123457789999887 45445444
No 260
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.04 E-value=4.8e-05 Score=80.75 Aligned_cols=125 Identities=22% Similarity=0.243 Sum_probs=75.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCC
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDI 419 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~ 419 (845)
.|..++||+|||||.++|++|..+|.+++.++|++-.+ ...+..+|.-+.. ..+-+++||++.+
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~-~GaW~cfdefnrl--------- 96 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQ-SGAWLCFDEFNRL--------- 96 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHH-HT-EEEEETCCCS---------
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhh-cCchhhhhhhhhh---------
Confidence 47789999999999999999999999999999987433 3455666666554 3579999999998
Q ss_pred CCCchHHHHHHHHHHHhhc-------------CC--cccCCcEEEEEEcCC----CCCCChhhhccCcccEEEEeCCCCH
Q 043051 420 GGGGAEREQGLLQILTEMD-------------GF--KVSTSQVLVIGATNR----LDILDPALLRKGRFDKIVRVGLPSK 480 (845)
Q Consensus 420 ~~~~~e~~~~L~qLL~emd-------------g~--~~~~~~ViVIaaTN~----pd~LDpALlRpgRFdr~I~v~~Pd~ 480 (845)
+.+.-..+.+.+..+. |. ..++ ..-+..+.|. ...|++.|+. -| |.+.+..||.
T Consensus 97 ---~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~-~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~ 169 (231)
T PF12774_consen 97 ---SEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNP-NCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDL 169 (231)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--T-T-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--H
T ss_pred ---hHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEcc-ceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCH
Confidence 3344444444444321 10 0011 2334445553 2357888875 44 6889999998
Q ss_pred hHHHHHH
Q 043051 481 DGRFAIL 487 (845)
Q Consensus 481 eeR~eIL 487 (845)
....+++
T Consensus 170 ~~I~ei~ 176 (231)
T PF12774_consen 170 SLIAEIL 176 (231)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666654
No 261
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=0.00014 Score=79.56 Aligned_cols=127 Identities=14% Similarity=0.194 Sum_probs=84.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCeE-----Eeec-----------hhHHHh-hhh--hhhhhHHHHHHHHHhc
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFF-----AANG-----------TDFVEM-FVG--VAASRVKDLFASARSF 397 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA~elg~pfi-----~vs~-----------sdf~~~-~vG--~~~~~vr~lF~~A~~~ 397 (845)
+.|.++||+|| +||+++|+++|..+-+.-- .-.| .|+... ..| .+...||++...+...
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 46789999996 6899999999987633210 0011 111100 011 2356778877766431
Q ss_pred ----CCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEE
Q 043051 398 ----APSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIV 473 (845)
Q Consensus 398 ----aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I 473 (845)
...|++||++|.+ +....+.|+..|+| ++.++++|..|+.++.|-|.+++++ ..+
T Consensus 100 p~~~~~kV~II~~ad~m------------~~~AaNaLLKtLEE------Pp~~t~~iL~t~~~~~lLpTI~SRc---q~i 158 (290)
T PRK07276 100 GYEGKQQVFIIKDADKM------------HVNAANSLLKVIEE------PQSEIYIFLLTNDENKVLPTIKSRT---QIF 158 (290)
T ss_pred cccCCcEEEEeehhhhc------------CHHHHHHHHHHhcC------CCCCeEEEEEECChhhCchHHHHcc---eee
Confidence 2369999999999 45566777777766 4555888889989999999999966 577
Q ss_pred EeCCCCHhHHHHHH
Q 043051 474 RVGLPSKDGRFAIL 487 (845)
Q Consensus 474 ~v~~Pd~eeR~eIL 487 (845)
.|+. +.+...+++
T Consensus 159 ~f~~-~~~~~~~~L 171 (290)
T PRK07276 159 HFPK-NEAYLIQLL 171 (290)
T ss_pred eCCC-cHHHHHHHH
Confidence 8865 444444444
No 262
>PF05729 NACHT: NACHT domain
Probab=98.01 E-value=0.00011 Score=71.90 Aligned_cols=142 Identities=17% Similarity=0.221 Sum_probs=72.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC--------CC-eEEeechhHHHh---------hh---hhhhhhHHHH-HHHHHhcC
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAG--------VP-FFAANGTDFVEM---------FV---GVAASRVKDL-FASARSFA 398 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg--------~p-fi~vs~sdf~~~---------~v---G~~~~~vr~l-F~~A~~~a 398 (845)
-++|+|+||+|||++++.++..+. .+ ++.+++.++... .. ......+... ...+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 489999999999999999987651 11 223333332211 11 1111112221 22233445
Q ss_pred CcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCC
Q 043051 399 PSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLP 478 (845)
Q Consensus 399 P~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~P 478 (845)
+.+|+||.+|.+...... .........+.+++.. ...++ +-+|.++.. .... .+.+...-...+.+...
T Consensus 82 ~~llilDglDE~~~~~~~----~~~~~~~~~l~~l~~~----~~~~~-~~liit~r~-~~~~-~~~~~~~~~~~~~l~~~ 150 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS----QERQRLLDLLSQLLPQ----ALPPG-VKLIITSRP-RAFP-DLRRRLKQAQILELEPF 150 (166)
T ss_pred ceEEEEechHhcccchhh----hHHHHHHHHHHHHhhh----ccCCC-CeEEEEEcC-ChHH-HHHHhcCCCcEEEECCC
Confidence 678999999999543210 0011122233344433 11122 333333332 2221 12221111146889999
Q ss_pred CHhHHHHHHHHHHhh
Q 043051 479 SKDGRFAILKVHARN 493 (845)
Q Consensus 479 d~eeR~eIL~~~l~~ 493 (845)
+.+++.++++.+++.
T Consensus 151 ~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 151 SEEDIKQYLRKYFSN 165 (166)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999887753
No 263
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.97 E-value=3.8e-05 Score=79.44 Aligned_cols=78 Identities=22% Similarity=0.297 Sum_probs=51.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHH-Hhhhhhh----------------------hhhHH
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFV-EMFVGVA----------------------ASRVK 388 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~-~~~vG~~----------------------~~~vr 388 (845)
|.....-++|+||||||||+++..++.+. +.+.++++..++. +.+.... ...+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 45555678999999999999999987543 6678888775421 1111100 11133
Q ss_pred HHHHHHHhcCCcEEEEcccchhcc
Q 043051 389 DLFASARSFAPSIIFIDEIDAIGS 412 (845)
Q Consensus 389 ~lF~~A~~~aP~ILfIDEIDaL~~ 412 (845)
.+.+.+....+++|+||-|.++.+
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhH
Confidence 334444555789999999999864
No 264
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.96 E-value=1.9e-05 Score=73.69 Aligned_cols=23 Identities=43% Similarity=0.748 Sum_probs=20.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhcC
Q 043051 342 VLLHGPPGTGKTLLAKAIAGEAG 364 (845)
Q Consensus 342 VLL~GPPGTGKT~LArALA~elg 364 (845)
|.|+||||+|||++|+.||..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999987764
No 265
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.00013 Score=89.41 Aligned_cols=202 Identities=24% Similarity=0.319 Sum_probs=123.3
Q ss_pred ccccccc-HHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeEEeech
Q 043051 305 FDDFAGQ-EYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA----------GVPFFAANGT 373 (845)
Q Consensus 305 F~dVvG~-de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el----------g~pfi~vs~s 373 (845)
++-++|. ++ +++.+++.|.... .++-+|+|.||+|||.++.-+|+.. +..++.++..
T Consensus 185 ldPvigr~de---eirRvi~iL~Rrt---------k~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g 252 (898)
T KOG1051|consen 185 LDPVIGRHDE---EIRRVIEILSRKT---------KNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFG 252 (898)
T ss_pred CCCccCCchH---HHHHHHHHHhccC---------CCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhh
Confidence 5666776 43 3344444443222 2567999999999999999999865 2345666654
Q ss_pred hHH--HhhhhhhhhhHHHHHHHHHhc-CCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEE
Q 043051 374 DFV--EMFVGVAASRVKDLFASARSF-APSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVI 450 (845)
Q Consensus 374 df~--~~~vG~~~~~vr~lF~~A~~~-aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVI 450 (845)
.++ .++.|..+.+++++...+... ..-||||||++-+.+.... .+ ......+|..+- ..+.+-+|
T Consensus 253 ~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~----~~----~~d~~nlLkp~L----~rg~l~~I 320 (898)
T KOG1051|consen 253 SLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN----YG----AIDAANLLKPLL----ARGGLWCI 320 (898)
T ss_pred hcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc----ch----HHHHHHhhHHHH----hcCCeEEE
Confidence 433 456788889999999988743 4558899999999764321 11 112223333321 12338999
Q ss_pred EEcCCCCC-----CChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhh----hcccchhhhhhHHHHHHH--HccCCcHH
Q 043051 451 GATNRLDI-----LDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARN----KYFRSEEEKDVLLQEIAE--LTEDFTGA 519 (845)
Q Consensus 451 aaTN~pd~-----LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~----~~l~~~~~~d~dl~~LA~--~t~GfSga 519 (845)
+||..... -||++-| ||+ .+.++.|+.+.-..||...... ++....+........++. .+..|-+.
T Consensus 321 GatT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd 397 (898)
T KOG1051|consen 321 GATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPD 397 (898)
T ss_pred ecccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCch
Confidence 98864333 3899999 998 5779999988877777655444 111111111122222221 23445566
Q ss_pred HHHHHHHHHHHHHH
Q 043051 520 ELQNILNEAGILTA 533 (845)
Q Consensus 520 DL~~LvneAal~A~ 533 (845)
-..+++++|+....
T Consensus 398 ~aidl~dEa~a~~~ 411 (898)
T KOG1051|consen 398 CAIDLEDEAAALVK 411 (898)
T ss_pred hcccHHHHHHHHHh
Confidence 66777777765443
No 266
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.81 E-value=4.9e-05 Score=93.60 Aligned_cols=211 Identities=18% Similarity=0.232 Sum_probs=130.6
Q ss_pred cccccCCCCCcccccccHHHHHHHHHHHHHhhCc--HHHhhcCCCC-Cc-eEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 043051 295 ISAEETTGVTFDDFAGQEYIKRELQEIVRILKND--EEFQNKGIYC-PK-GVLLHGPPGTGKTLLAKAIAGEAGVPFFAA 370 (845)
Q Consensus 295 ~~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p--~~~~~~g~~~-Pr-gVLL~GPPGTGKT~LArALA~elg~pfi~v 370 (845)
.+.+++.+....++.|.......+.+-++-.+.+ ..|...+-.. .+ .+|++||||+|||+.|.++|++.|..++..
T Consensus 309 ~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~ 388 (871)
T KOG1968|consen 309 GWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEK 388 (871)
T ss_pred ccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeec
Confidence 4556677777788888776655444433332221 1111111111 12 379999999999999999999999999999
Q ss_pred echhHHHhhhhh-------hhhhHHHHH---HHHHh-cCC-cEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc
Q 043051 371 NGTDFVEMFVGV-------AASRVKDLF---ASARS-FAP-SIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD 438 (845)
Q Consensus 371 s~sdf~~~~vG~-------~~~~vr~lF---~~A~~-~aP-~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd 438 (845)
+.++..+..... +...+...| ..... +.. .||++||+|.+.. +.......+.++....
T Consensus 389 Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~---------~dRg~v~~l~~l~~ks- 458 (871)
T KOG1968|consen 389 NASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG---------EDRGGVSKLSSLCKKS- 458 (871)
T ss_pred CccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc---------hhhhhHHHHHHHHHhc-
Confidence 998765432211 112233333 11100 112 3899999999853 1122344555665531
Q ss_pred CCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcH
Q 043051 439 GFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTG 518 (845)
Q Consensus 439 g~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSg 518 (845)
..-+|+++|..+......+. |-+..++|+.|+...+..-+...+....+.. .+..++.+...+ +
T Consensus 459 -------~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki---~~~~l~~~s~~~----~ 522 (871)
T KOG1968|consen 459 -------SRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKI---SDDVLEEISKLS----G 522 (871)
T ss_pred -------cCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceec---CcHHHHHHHHhc----c
Confidence 24566777766655443333 4335689999999999988887777665553 455677777765 6
Q ss_pred HHHHHHHHHHHHH
Q 043051 519 AELQNILNEAGIL 531 (845)
Q Consensus 519 aDL~~LvneAal~ 531 (845)
+||+++++...++
T Consensus 523 ~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 523 GDIRQIIMQLQFW 535 (871)
T ss_pred cCHHHHHHHHhhh
Confidence 6999998877666
No 267
>PHA00729 NTP-binding motif containing protein
Probab=97.75 E-value=8.9e-05 Score=78.22 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=23.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAG 364 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg 364 (845)
.+++|+|+||||||+||.+||..++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999875
No 268
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.74 E-value=0.0002 Score=72.29 Aligned_cols=32 Identities=38% Similarity=0.437 Sum_probs=25.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCeEEeech
Q 043051 342 VLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGT 373 (845)
Q Consensus 342 VLL~GPPGTGKT~LArALA~el---g~pfi~vs~s 373 (845)
+|++||||||||+++..++.+. |.++++++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 7899999999999999886643 6777777653
No 269
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.71 E-value=8.2e-05 Score=78.38 Aligned_cols=111 Identities=19% Similarity=0.213 Sum_probs=57.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechh-H---------HHhhhhhhhhhHHHHHHHHH--hcCCcEEEEc
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTD-F---------VEMFVGVAASRVKDLFASAR--SFAPSIIFID 405 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sd-f---------~~~~vG~~~~~vr~lF~~A~--~~aP~ILfID 405 (845)
.|.-+||||+||+|||++|+.+++. ..++..+++. . ...-.......+.+.+..+. .....+|+||
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVID 88 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVID 88 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEe
Confidence 3677999999999999999999732 2223322211 0 00000001122333333332 2335799999
Q ss_pred ccchhcc------CCCC-CC--CCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEc
Q 043051 406 EIDAIGS------KRGG-PD--IGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGAT 453 (845)
Q Consensus 406 EIDaL~~------~R~~-~~--~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaT 453 (845)
.|+.+.. .|.. .+ ...+-......+..+|..+.. ...+|++++-.
T Consensus 89 sI~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~---~g~nII~tAhe 142 (220)
T TIGR01618 89 NISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKE---SNKNIYATAWE 142 (220)
T ss_pred cHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHh---CCCcEEEEEee
Confidence 9999865 2211 11 111223344556666666543 23346666644
No 270
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.70 E-value=0.0013 Score=75.19 Aligned_cols=76 Identities=13% Similarity=0.187 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHh----cCCCeEEeechhHHHhhhhhhhhhH
Q 043051 312 EYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGE----AGVPFFAANGTDFVEMFVGVAASRV 387 (845)
Q Consensus 312 de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~e----lg~pfi~vs~sdf~~~~vG~~~~~v 387 (845)
......|..++.++... .++++.||||||||++|.+++.. .| -.++.+.++.... .
T Consensus 193 r~k~~~L~rl~~fve~~-----------~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~----~-- 252 (449)
T TIGR02688 193 RQKLLLLARLLPLVEPN-----------YNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIS----T-- 252 (449)
T ss_pred HHHHHHHHhhHHHHhcC-----------CcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHH----H--
Confidence 44444566666666543 47999999999999999999776 24 3333444332211 1
Q ss_pred HHHHHHHHhcCCcEEEEcccchh
Q 043051 388 KDLFASARSFAPSIIFIDEIDAI 410 (845)
Q Consensus 388 r~lF~~A~~~aP~ILfIDEIDaL 410 (845)
..+.. -....+|+|||+..+
T Consensus 253 -~~lg~--v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 253 -RQIGL--VGRWDVVAFDEVATL 272 (449)
T ss_pred -HHHhh--hccCCEEEEEcCCCC
Confidence 11111 123579999999886
No 271
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.70 E-value=9.1e-05 Score=79.47 Aligned_cols=137 Identities=26% Similarity=0.352 Sum_probs=80.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHH------HhcCCCeEEeechhHHHhh-hhhhhhhHHHHHHHH--------HhcCCcE
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIA------GEAGVPFFAANGTDFVEMF-VGVAASRVKDLFASA--------RSFAPSI 401 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA------~elg~pfi~vs~sdf~~~~-vG~~~~~vr~lF~~A--------~~~aP~I 401 (845)
+.-.++||.||.|.||+.||+.|- +.+..+|+.++|..+.... +..--..++..|.-| +....++
T Consensus 206 rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggm 285 (531)
T COG4650 206 RSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGM 285 (531)
T ss_pred hccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCce
Confidence 334569999999999999999983 2457899999998764210 000011222223222 2224589
Q ss_pred EEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCc-----ccCCcEEEEEEcCCCC-------CCChhhhccCcc
Q 043051 402 IFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFK-----VSTSQVLVIGATNRLD-------ILDPALLRKGRF 469 (845)
Q Consensus 402 LfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~-----~~~~~ViVIaaTN~pd-------~LDpALlRpgRF 469 (845)
+|+|||..+|.. .+..|+..+++-.-+. .-...+-+|+.|.+.- ..-..|.- |+
T Consensus 286 lfldeigelgad------------eqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~a--ri 351 (531)
T COG4650 286 LFLDEIGELGAD------------EQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYA--RI 351 (531)
T ss_pred EehHhhhhcCcc------------HHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHH--hh
Confidence 999999998532 3455666666621111 1123466777775421 11222222 22
Q ss_pred cEEEEeCCCCHhHHHHHHH
Q 043051 470 DKIVRVGLPSKDGRFAILK 488 (845)
Q Consensus 470 dr~I~v~~Pd~eeR~eIL~ 488 (845)
. ...|.+|...+|.+-++
T Consensus 352 n-lwtf~lpgl~qr~edie 369 (531)
T COG4650 352 N-LWTFTLPGLRQRQEDIE 369 (531)
T ss_pred h-eeeeeccccccCccccC
Confidence 2 56889999998887653
No 272
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=97.66 E-value=2.4e-05 Score=71.84 Aligned_cols=47 Identities=13% Similarity=0.260 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhccc--ccCCCCCccccHHHHHHHHHcCCccEEEEEeC
Q 043051 114 WSRVLMTMCGRLKGT--ELDPENSHRIDFSDFWKLLNSNSVQYMEYSNY 160 (845)
Q Consensus 114 w~~~~~~~~~~~~~~--~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~ 160 (845)
|+.+++++++++..+ ........+|+||+|+++|++|+|++|++.++
T Consensus 4 ~ili~~vi~~l~~~~~~~~~~~~~~~i~YS~F~~~l~~g~V~~V~i~~~ 52 (110)
T PF06480_consen 4 YILIILVILLLFNFFFFNSNNSQTKEISYSEFLQMLEKGNVKKVVIQND 52 (110)
T ss_dssp ---------------S------SSEE--HHHHHHTGGGT-EEEEEEETT
T ss_pred eehhHHHHHHHHHHHHhhcccCCCcEECHHHHHHHHHcCCEEEEEEECC
Confidence 444444444444333 23445667899999999999999999999953
No 273
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.65 E-value=0.00014 Score=72.19 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=32.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHh
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM 378 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~ 378 (845)
++..++|+||||||||++|+++|..++.+|+.. .++...
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~--d~~~~~ 41 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT--DHLIEA 41 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC--hHHHHH
Confidence 467899999999999999999999999998854 344443
No 274
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.62 E-value=0.00037 Score=76.50 Aligned_cols=160 Identities=22% Similarity=0.369 Sum_probs=97.2
Q ss_pred cccccHHHHHHHHHHHHHh-hCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHH---HHhcCCCeEEeechhHHHh----
Q 043051 307 DFAGQEYIKRELQEIVRIL-KNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAI---AGEAGVPFFAANGTDFVEM---- 378 (845)
Q Consensus 307 dVvG~de~k~eL~eiv~~L-k~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArAL---A~elg~pfi~vs~sdf~~~---- 378 (845)
.+.|...-.+.+.+++..- -..+ ...|++.||.|+|||++.... +++.|-.|+.+.-..+...
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gE---------snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGE---------SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcC---------CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 4567666667777776552 2222 468999999999999886644 3467777776654322211
Q ss_pred -----------------hhhhhhhhHHHHHHHHHh---cCCc-EEEE-cccchhccCCCCCCCCCCchHHHHHHHHHHHh
Q 043051 379 -----------------FVGVAASRVKDLFASARS---FAPS-IIFI-DEIDAIGSKRGGPDIGGGGAEREQGLLQILTE 436 (845)
Q Consensus 379 -----------------~vG~~~~~vr~lF~~A~~---~aP~-ILfI-DEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~e 436 (845)
..|.....+..++...+. ...| |||| ||||.++.. .++-.|..+++-
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h-----------~rQtllYnlfDi 164 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPH-----------SRQTLLYNLFDI 164 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccc-----------hhhHHHHHHHHH
Confidence 112223334444443332 1122 6665 799998643 233444455544
Q ss_pred hcCCcccCCcEEEEEEcCCCCCC---ChhhhccCcccEE-EEeCCC-CHhHHHHHHHHHH
Q 043051 437 MDGFKVSTSQVLVIGATNRLDIL---DPALLRKGRFDKI-VRVGLP-SKDGRFAILKVHA 491 (845)
Q Consensus 437 mdg~~~~~~~ViVIaaTN~pd~L---DpALlRpgRFdr~-I~v~~P-d~eeR~eIL~~~l 491 (845)
.. ....++.||+.|.+.+.+ .....+ ||... |++.++ +..+..++++..+
T Consensus 165 sq---s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 165 SQ---SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred Hh---hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 22 234569999999887764 577777 99754 666544 6788888888776
No 275
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.61 E-value=0.00087 Score=72.77 Aligned_cols=123 Identities=24% Similarity=0.260 Sum_probs=74.6
Q ss_pred cccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhhh-----
Q 043051 307 DFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFV----- 380 (845)
Q Consensus 307 dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~v----- 380 (845)
.+.||.-+++.+...+.. +.++. -+.|.-+=|+|+|||||...++.||+.+...- -.|.++.+|+
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~G---l~S~~V~~fvat~hF 153 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGG---LRSPFVHHFVATLHF 153 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhcc---ccchhHHHhhhhccC
Confidence 478999888887776655 44433 12355666889999999999999999762111 1233333333
Q ss_pred ----------hhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHh---hcCCcccCCcE
Q 043051 381 ----------GVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTE---MDGFKVSTSQV 447 (845)
Q Consensus 381 ----------G~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~e---mdg~~~~~~~V 447 (845)
-.-..+|++.. .....+|.++||.|.+ +...-+.|--+|+. .+|. +..+-
T Consensus 154 P~~~~ie~Yk~eL~~~v~~~v---~~C~rslFIFDE~DKm------------p~gLld~lkpfLdyyp~v~gv--~frka 216 (344)
T KOG2170|consen 154 PHASKIEDYKEELKNRVRGTV---QACQRSLFIFDEVDKL------------PPGLLDVLKPFLDYYPQVSGV--DFRKA 216 (344)
T ss_pred CChHHHHHHHHHHHHHHHHHH---HhcCCceEEechhhhc------------CHhHHHHHhhhhccccccccc--cccce
Confidence 22333444433 3445579999999999 34455555555552 3332 23345
Q ss_pred EEEEEcCC
Q 043051 448 LVIGATNR 455 (845)
Q Consensus 448 iVIaaTN~ 455 (845)
|+|.-+|.
T Consensus 217 IFIfLSN~ 224 (344)
T KOG2170|consen 217 IFIFLSNA 224 (344)
T ss_pred EEEEEcCC
Confidence 66666654
No 276
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.60 E-value=0.00039 Score=80.74 Aligned_cols=78 Identities=26% Similarity=0.436 Sum_probs=57.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHhhh------hh--------hhhhHHHHHHHHHhc
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEMFV------GV--------AASRVKDLFASARSF 397 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~~v------G~--------~~~~vr~lF~~A~~~ 397 (845)
|..+..-++|+||||+|||+|+..+|... +.+++++++.+-.+... |. ....+..+++..+..
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 45555678999999999999999998755 67888888765433221 11 123456677777777
Q ss_pred CCcEEEEcccchhcc
Q 043051 398 APSIIFIDEIDAIGS 412 (845)
Q Consensus 398 aP~ILfIDEIDaL~~ 412 (845)
.|.+|+||+|..+..
T Consensus 156 ~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 156 KPDLVVIDSIQTMYS 170 (446)
T ss_pred CCCEEEEechhhhcc
Confidence 899999999999864
No 277
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.60 E-value=0.00037 Score=77.15 Aligned_cols=138 Identities=18% Similarity=0.173 Sum_probs=75.2
Q ss_pred CCcccccccHHHHHHHHHHHHHhhCcHHHhh----c---CCCCCceEEEEcCCCChHHHHHHHHHHhcCCCe-EEeechh
Q 043051 303 VTFDDFAGQEYIKRELQEIVRILKNDEEFQN----K---GIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPF-FAANGTD 374 (845)
Q Consensus 303 ~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~----~---g~~~PrgVLL~GPPGTGKT~LArALA~elg~pf-i~vs~sd 374 (845)
-+|.+=.-+..+.+.|..+.+.+..+..-.. + ...+|+|+.|||+-|+|||+|.-..-..+-.+- ..+.-..
T Consensus 22 ~~~~~D~aQ~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~ 101 (367)
T COG1485 22 GTFQPDPAQPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHR 101 (367)
T ss_pred CCCCCChHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHH
Confidence 3444444456666677766664433221111 2 234789999999999999999999887764432 2222223
Q ss_pred HHHh-------hhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcE
Q 043051 375 FVEM-------FVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQV 447 (845)
Q Consensus 375 f~~~-------~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~V 447 (845)
|+.. ..|.+ .-+..+-....+. --||+|||+.-= +. .-.-.|..|+.++- ..+ |
T Consensus 102 FM~~vH~~l~~l~g~~-dpl~~iA~~~~~~-~~vLCfDEF~Vt-------DI-----~DAMiL~rL~~~Lf----~~G-V 162 (367)
T COG1485 102 FMARVHQRLHTLQGQT-DPLPPIADELAAE-TRVLCFDEFEVT-------DI-----ADAMILGRLLEALF----ARG-V 162 (367)
T ss_pred HHHHHHHHHHHHcCCC-CccHHHHHHHHhc-CCEEEeeeeeec-------Ch-----HHHHHHHHHHHHHH----HCC-c
Confidence 3321 12222 1122222222222 249999998652 11 11234555666642 234 9
Q ss_pred EEEEEcCC-CCCC
Q 043051 448 LVIGATNR-LDIL 459 (845)
Q Consensus 448 iVIaaTN~-pd~L 459 (845)
++++|+|. |+.|
T Consensus 163 ~lvaTSN~~P~~L 175 (367)
T COG1485 163 VLVATSNTAPDNL 175 (367)
T ss_pred EEEEeCCCChHHh
Confidence 99999986 4444
No 278
>PRK08118 topology modulation protein; Reviewed
Probab=97.58 E-value=0.0001 Score=74.26 Aligned_cols=32 Identities=25% Similarity=0.556 Sum_probs=29.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEeec
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAANG 372 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~vs~ 372 (845)
-|+++||||+||||+|+.|+..++.|++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 48999999999999999999999999998774
No 279
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.57 E-value=0.00073 Score=71.68 Aligned_cols=110 Identities=20% Similarity=0.326 Sum_probs=61.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechh----HHHhh--hhh-----------------------
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTD----FVEMF--VGV----------------------- 382 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sd----f~~~~--vG~----------------------- 382 (845)
|.+...-++|+||||||||++|..++... |.+.++++..+ +.... .|.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 34445679999999999999986554332 66777776532 11110 000
Q ss_pred --hhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCC
Q 043051 383 --AASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRL 456 (845)
Q Consensus 383 --~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~p 456 (845)
....+..+.+.+....|.+++|||+-.+.... ........+.+++..+.. .+ ..++.+++..
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~-------~d~~~~~~l~~~l~~l~~----~g-~tvi~t~~~~ 163 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISND-------ASEVAVNDLMAFFKRISS----LN-KVIILTANPK 163 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCC-------cchHHHHHHHHHHHHHHh----CC-CEEEEEeccc
Confidence 02233344555555568999999998874211 111223445666665421 23 3555566644
No 280
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.57 E-value=5.8e-05 Score=70.83 Aligned_cols=30 Identities=40% Similarity=0.884 Sum_probs=26.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 043051 342 VLLHGPPGTGKTLLAKAIAGEAGVPFFAAN 371 (845)
Q Consensus 342 VLL~GPPGTGKT~LArALA~elg~pfi~vs 371 (845)
|+|.||||+||||+|+.||..+|.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999998876444
No 281
>PTZ00202 tuzin; Provisional
Probab=97.57 E-value=0.0089 Score=68.59 Aligned_cols=66 Identities=20% Similarity=0.338 Sum_probs=52.2
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechh
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTD 374 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sd 374 (845)
..+..-.+++|.+....+|..++..+ ....|+-+.|+||+|||||+|++.++..++.+.+.++...
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~---------d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg 321 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRL---------DTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRG 321 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhcc---------CCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCC
Confidence 34666789999998888887777532 2234567899999999999999999999998877777653
No 282
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.56 E-value=0.00032 Score=73.50 Aligned_cols=39 Identities=31% Similarity=0.405 Sum_probs=31.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeech
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGT 373 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~s 373 (845)
|.+...-++|+||||+|||++|..+|.+. +.+.+++++.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 45555678999999999999999998644 7788888776
No 283
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.55 E-value=8.9e-05 Score=87.01 Aligned_cols=65 Identities=25% Similarity=0.337 Sum_probs=46.6
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-CCCeEEeec
Q 043051 302 GVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA-GVPFFAANG 372 (845)
Q Consensus 302 ~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el-g~pfi~vs~ 372 (845)
-.-|+|+.|++++++.+.+.+.. .- ..++. ..+.++|.||||+|||+||++||+-+ ..|++.+.+
T Consensus 72 y~fF~d~yGlee~ieriv~~l~~---Aa--~gl~~-~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 72 YPAFEEFYGMEEAIEQIVSYFRH---AA--QGLEE-KKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred ccchhcccCcHHHHHHHHHHHHH---HH--HhcCC-CCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 44699999999998877665522 11 11111 23578999999999999999999876 357777655
No 284
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.54 E-value=0.0002 Score=83.33 Aligned_cols=175 Identities=25% Similarity=0.276 Sum_probs=90.4
Q ss_pred cccccHHHHHHHHHHHHH--hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhhhhhhh
Q 043051 307 DFAGQEYIKRELQEIVRI--LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAA 384 (845)
Q Consensus 307 dVvG~de~k~eL~eiv~~--Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~vG~~~ 384 (845)
.|.|++.+|..+.-.+-- -+++.- +-.++---+|||+|.||||||-+.|.+++-+...++..--. ...+|.++
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~--khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqG---ASavGLTa 524 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGG--KHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQG---ASAVGLTA 524 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCC--CceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCC---ccccceeE
Confidence 578999999887554422 122221 01122234799999999999999999999887666543211 11233322
Q ss_pred hhHHHH--HHHH------HhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCc-ccCCcEEEEEEcCC
Q 043051 385 SRVKDL--FASA------RSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFK-VSTSQVLVIGATNR 455 (845)
Q Consensus 385 ~~vr~l--F~~A------~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~-~~~~~ViVIaaTN~ 455 (845)
...++= =++. --...+|.+|||+|.+..+-. ...|...+|.-..+-.. |+. .-..+..||||+|+
T Consensus 525 ~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqDR----tSIHEAMEQQSISISKA--GIVtsLqArctvIAAanP 598 (854)
T KOG0477|consen 525 YVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQDR----TSIHEAMEQQSISISKA--GIVTSLQARCTVIAAANP 598 (854)
T ss_pred EEeeCCccceeeeccCeEEEccCceEEeehhhhhccccc----chHHHHHHhcchhhhhh--hHHHHHHhhhhhheecCC
Confidence 222210 0000 001247999999999943211 11222222221111110 000 01234789999997
Q ss_pred CC-------------CCChhhhccCcccEEEEeC---CCCHhHHH--HHHHHHHhhh
Q 043051 456 LD-------------ILDPALLRKGRFDKIVRVG---LPSKDGRF--AILKVHARNK 494 (845)
Q Consensus 456 pd-------------~LDpALlRpgRFdr~I~v~---~Pd~eeR~--eIL~~~l~~~ 494 (845)
.. .|-..+++ |||-...+. -|-.+++. -++..|.+..
T Consensus 599 igGRY~~s~tFaqNV~ltePIlS--RFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~h 653 (854)
T KOG0477|consen 599 IGGRYNPSLTFAQNVDLTEPILS--RFDILCVVKDTVDPVQDEKLAKFVVGSHVRHH 653 (854)
T ss_pred CCCccCCccchhhccccccchhh--hcceeeeeecccCchhHHHHHHHHHHhHhhcC
Confidence 22 24566777 999644443 23333333 3445555443
No 285
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.53 E-value=0.00025 Score=77.10 Aligned_cols=114 Identities=22% Similarity=0.401 Sum_probs=65.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCC----------CeEEee-chhHHHhhhhh-------------hhhhHHHHHHHHH
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAGV----------PFFAAN-GTDFVEMFVGV-------------AASRVKDLFASAR 395 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg~----------pfi~vs-~sdf~~~~vG~-------------~~~~vr~lF~~A~ 395 (845)
++++|.||||+|||+|.+++++...- ++..++ ..++...+.+. ...+...++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 68999999999999999999987632 222222 12222111111 1122345666777
Q ss_pred hcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCC-------hhhhccCc
Q 043051 396 SFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILD-------PALLRKGR 468 (845)
Q Consensus 396 ~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LD-------pALlRpgR 468 (845)
.+.|.+|++||+.. . ..+..++..+. .+ ..+|++|+.++..+ ..|+..+-
T Consensus 192 ~~~P~villDE~~~--------------~---e~~~~l~~~~~-----~G-~~vI~ttH~~~~~~~~~r~~~~~l~~~~~ 248 (270)
T TIGR02858 192 SMSPDVIVVDEIGR--------------E---EDVEALLEALH-----AG-VSIIATAHGRDVEDLYKRPVFKELIENEA 248 (270)
T ss_pred hCCCCEEEEeCCCc--------------H---HHHHHHHHHHh-----CC-CEEEEEechhHHHHHHhChHHHHHHhcCc
Confidence 78999999999521 1 22334444431 23 56778887543211 12333455
Q ss_pred ccEEEEeC
Q 043051 469 FDKIVRVG 476 (845)
Q Consensus 469 Fdr~I~v~ 476 (845)
|++.+.+.
T Consensus 249 ~~r~i~L~ 256 (270)
T TIGR02858 249 FERYVVLS 256 (270)
T ss_pred eEEEEEEe
Confidence 77777664
No 286
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.52 E-value=0.0006 Score=77.35 Aligned_cols=78 Identities=28% Similarity=0.517 Sum_probs=55.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHhh------hhh--------hhhhHHHHHHHHHhc
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEMF------VGV--------AASRVKDLFASARSF 397 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~~------vG~--------~~~~vr~lF~~A~~~ 397 (845)
|..+..-++|+|+||+|||+|+..+|... +.+++++++.+-.+.. .|. ....+..+++.+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 45555678999999999999999998754 4678888765422211 111 123456677777777
Q ss_pred CCcEEEEcccchhcc
Q 043051 398 APSIIFIDEIDAIGS 412 (845)
Q Consensus 398 aP~ILfIDEIDaL~~ 412 (845)
.|.+|+||+|..+..
T Consensus 158 ~~~lVVIDSIq~l~~ 172 (372)
T cd01121 158 KPDLVIIDSIQTVYS 172 (372)
T ss_pred CCcEEEEcchHHhhc
Confidence 899999999999854
No 287
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.52 E-value=0.0052 Score=67.66 Aligned_cols=117 Identities=19% Similarity=0.203 Sum_probs=65.3
Q ss_pred CCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCC---------------CCChh
Q 043051 398 APSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLD---------------ILDPA 462 (845)
Q Consensus 398 aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd---------------~LDpA 462 (845)
.+-||||||+|++. .+....++..+..+-.+ .++++|.+.++.. ..-..
T Consensus 172 ~~iViiIDdLDR~~------------~~~i~~~l~~ik~~~~~----~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~ 235 (325)
T PF07693_consen 172 KRIVIIIDDLDRCS------------PEEIVELLEAIKLLLDF----PNIIFILAFDPEILEKAIEKNYGEGFDEIDGRE 235 (325)
T ss_pred ceEEEEEcchhcCC------------cHHHHHHHHHHHHhcCC----CCeEEEEEecHHHHHHHHHhhcCcccccccHHH
Confidence 36699999999982 22333444445544322 3477777775321 11112
Q ss_pred hhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhh----------------hhHHHHHHHHcc--CCcHHHHHHH
Q 043051 463 LLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEK----------------DVLLQEIAELTE--DFTGAELQNI 524 (845)
Q Consensus 463 LlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~----------------d~dl~~LA~~t~--GfSgaDL~~L 524 (845)
.+.. -|+..+.+|.|+..+....+...+........... ...+..+..... ..++|++..+
T Consensus 236 yLeK-iiq~~~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~npR~ikr~ 314 (325)
T PF07693_consen 236 YLEK-IIQVPFSLPPPSPSDLERYLNELLESLESETNESDDIETLSNSASNENLRIDEILNDIIDSIDFSIGNPRDIKRF 314 (325)
T ss_pred HHHh-hcCeEEEeCCCCHHHHHHHHHHHHHHhhhccccccchhhhhhcchhhhhhHHHHHHHHHHhhhhcCCCHHHHHHH
Confidence 2220 36778899999999988888777544332211111 122333333222 3478888888
Q ss_pred HHHHHHH
Q 043051 525 LNEAGIL 531 (845)
Q Consensus 525 vneAal~ 531 (845)
+|.-.+.
T Consensus 315 iN~~~~~ 321 (325)
T PF07693_consen 315 INSLSLL 321 (325)
T ss_pred HHHHHHH
Confidence 8866543
No 288
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.46 E-value=0.00034 Score=79.20 Aligned_cols=111 Identities=20% Similarity=0.304 Sum_probs=63.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc----C-CCeEEeechhHH-------H---hhhhh------hhhhHHHHHHHHHh
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA----G-VPFFAANGTDFV-------E---MFVGV------AASRVKDLFASARS 396 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el----g-~pfi~vs~sdf~-------~---~~vG~------~~~~vr~lF~~A~~ 396 (845)
....++|+||+|+|||+++..||..+ | ..+..+.+..+. . ...|. ....+...+...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l-- 213 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL-- 213 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh--
Confidence 35679999999999999999998764 3 244444443331 1 11121 112233333322
Q ss_pred cCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhh
Q 043051 397 FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALL 464 (845)
Q Consensus 397 ~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALl 464 (845)
....+|+||...... ....+...+..+.+.......++|+.+|+..+.++..+.
T Consensus 214 ~~~DlVLIDTaG~~~--------------~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 214 RNKHMVLIDTIGMSQ--------------RDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred cCCCEEEEcCCCCCc--------------ccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 345799999875431 112244444444443333445888888888887765543
No 289
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.46 E-value=0.00084 Score=69.97 Aligned_cols=39 Identities=33% Similarity=0.405 Sum_probs=30.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeech
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGT 373 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~s 373 (845)
|.....-++|+|+||||||+++..+|.+. |.+.++++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 44445559999999999999999998765 5677777653
No 290
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.45 E-value=0.00056 Score=70.95 Aligned_cols=105 Identities=21% Similarity=0.341 Sum_probs=59.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc-----CCCe-------------EEeechhHHHh---hhhhhhhhHHHHHHHHHhcC
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA-----GVPF-------------FAANGTDFVEM---FVGVAASRVKDLFASARSFA 398 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el-----g~pf-------------i~vs~sdf~~~---~vG~~~~~vr~lF~~A~~~a 398 (845)
+-++|+||+|+|||+|.|.++... |.++ ..++..+-+.. .......++..+++.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 568999999999999999998533 4332 11111111100 11122356777888776557
Q ss_pred CcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCC
Q 043051 399 PSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDIL 459 (845)
Q Consensus 399 P~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~L 459 (845)
|.+|++||.-.= .+..........++..+.. .+ ..+|.+|+..+.+
T Consensus 106 p~llllDEp~~g----------lD~~~~~~l~~~ll~~l~~----~~-~tiiivTH~~~~~ 151 (199)
T cd03283 106 PVLFLLDEIFKG----------TNSRERQAASAAVLKFLKN----KN-TIGIISTHDLELA 151 (199)
T ss_pred CeEEEEecccCC----------CCHHHHHHHHHHHHHHHHH----CC-CEEEEEcCcHHHH
Confidence 899999996431 1122222233345555421 23 5666777766543
No 291
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.44 E-value=0.00029 Score=72.52 Aligned_cols=124 Identities=19% Similarity=0.153 Sum_probs=60.4
Q ss_pred EEEEcCCCChHHHHHHHH-HHh---cCCCeEEeechhHH-H---hhhhhh-------------hhhHHHHHHHHHhcCCc
Q 043051 342 VLLHGPPGTGKTLLAKAI-AGE---AGVPFFAANGTDFV-E---MFVGVA-------------ASRVKDLFASARSFAPS 400 (845)
Q Consensus 342 VLL~GPPGTGKT~LArAL-A~e---lg~pfi~vs~sdf~-~---~~vG~~-------------~~~vr~lF~~A~~~aP~ 400 (845)
.+++|.||+|||+.|-.. ... .|.+++. +...+. + .+.+.. ................+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 589999999999988665 433 3777665 433221 1 110100 00111222222222468
Q ss_pred EEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCC
Q 043051 401 IIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPS 479 (845)
Q Consensus 401 ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd 479 (845)
+|+|||++.+...|.... ......+ +.|... ...+.-||.+|..+..||+.+++ ..+.++.+..++
T Consensus 82 liviDEa~~~~~~r~~~~-----~~~~~~~-~~l~~h-----Rh~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~~ 147 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKG-----KKVPEII-EFLAQH-----RHYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKLD 147 (193)
T ss_dssp EEEETTGGGTSB---T-T---------HHH-HGGGGC-----CCTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE--
T ss_pred EEEEECChhhcCCCcccc-----ccchHHH-HHHHHh-----CcCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEeec
Confidence 999999999988775211 1112222 444442 23347888899999999999976 777777776553
No 292
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.41 E-value=0.0054 Score=70.37 Aligned_cols=123 Identities=21% Similarity=0.177 Sum_probs=73.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCC
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIG 420 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~ 420 (845)
-++|+||.+||||++++.+.+...-.+++++..|........ ......+..+.....+.||||||+.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v---------- 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNV---------- 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCc----------
Confidence 799999999999999998888875556666655543322111 11222222222224479999999998
Q ss_pred CCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHH
Q 043051 421 GGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFA 485 (845)
Q Consensus 421 ~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~e 485 (845)
...+..+..+.+.. . . +|++.+++........+-.=+||. ..+.+.+.+..+...
T Consensus 107 ---~~W~~~lk~l~d~~---~--~-~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 107 ---PDWERALKYLYDRG---N--L-DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred ---hhHHHHHHHHHccc---c--c-eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 23445555554331 1 1 355554443333333333346785 467888889888865
No 293
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.41 E-value=0.0015 Score=65.33 Aligned_cols=26 Identities=35% Similarity=0.547 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el 363 (845)
.+.-++++|+||+|||+++.-+|..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 45679999999999999999999876
No 294
>PRK06762 hypothetical protein; Provisional
Probab=97.38 E-value=0.00054 Score=68.24 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=33.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHh
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM 378 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~ 378 (845)
|+-++|+|+||+|||++|+.+++.++..++.++...+...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~ 41 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRD 41 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHH
Confidence 5678999999999999999999999766777777666543
No 295
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.37 E-value=0.00049 Score=66.26 Aligned_cols=35 Identities=34% Similarity=0.618 Sum_probs=28.8
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHh
Q 043051 342 VLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM 378 (845)
Q Consensus 342 VLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~ 378 (845)
++++||||||||++|+.+++.++ ...++..++...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~ 36 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRR 36 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHH
Confidence 78999999999999999999999 555666655543
No 296
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.36 E-value=0.00071 Score=75.14 Aligned_cols=79 Identities=27% Similarity=0.270 Sum_probs=49.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHh----hhhh------------hhhhHHHHHHHHH
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEM----FVGV------------AASRVKDLFASAR 395 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~----~vG~------------~~~~vr~lF~~A~ 395 (845)
|.+..+.++|+||||||||+||-.++.++ |.+.+++++.+..+. ..|. .+..+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 44445678899999999999988775543 677777765432211 0111 1112222223334
Q ss_pred hcCCcEEEEcccchhccC
Q 043051 396 SFAPSIIFIDEIDAIGSK 413 (845)
Q Consensus 396 ~~aP~ILfIDEIDaL~~~ 413 (845)
...+.+|+||-+.++.++
T Consensus 131 ~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPK 148 (321)
T ss_pred ccCCcEEEEcchhhhccc
Confidence 567899999999999753
No 297
>PRK07261 topology modulation protein; Provisional
Probab=97.35 E-value=0.00027 Score=71.46 Aligned_cols=31 Identities=23% Similarity=0.469 Sum_probs=28.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeEEeec
Q 043051 342 VLLHGPPGTGKTLLAKAIAGEAGVPFFAANG 372 (845)
Q Consensus 342 VLL~GPPGTGKT~LArALA~elg~pfi~vs~ 372 (845)
++|+|+||+||||||+.|+..++.|++..+.
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 7999999999999999999999999887664
No 298
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.35 E-value=0.00058 Score=85.92 Aligned_cols=138 Identities=26% Similarity=0.316 Sum_probs=94.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechh---HHHhhhh----h--hhhhHH-HHHHHHHhcCCcEEEEcccc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTD---FVEMFVG----V--AASRVK-DLFASARSFAPSIIFIDEID 408 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sd---f~~~~vG----~--~~~~vr-~lF~~A~~~aP~ILfIDEID 408 (845)
.+++||-|.||+|||.|..|+|++.|-.++.++.|+ ++..|.. . ++-+.+ .-|-.|.+ ...-|++||+.
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr-~G~WVlLDEiN 1621 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMR-DGGWVLLDEIN 1621 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhh-cCCEEEeehhh
Confidence 468999999999999999999999999999999875 3332211 1 122222 22334444 45689999987
Q ss_pred hhccCCCCCCCCCCchHHHHHHHHHHHh--------hcCCcccCCcEEEEEEcCCCC------CCChhhhccCcccEEEE
Q 043051 409 AIGSKRGGPDIGGGGAEREQGLLQILTE--------MDGFKVSTSQVLVIGATNRLD------ILDPALLRKGRFDKIVR 474 (845)
Q Consensus 409 aL~~~R~~~~~~~~~~e~~~~L~qLL~e--------mdg~~~~~~~ViVIaaTN~pd------~LDpALlRpgRFdr~I~ 474 (845)
.- +...-..|+..|.. +|-.-.-..++.|.||-|+-+ .|+..++. ||. +|.
T Consensus 1622 La------------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-vV~ 1686 (4600)
T COG5271 1622 LA------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-VVK 1686 (4600)
T ss_pred hh------------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-eEE
Confidence 64 22344556776664 221111233488888888644 48999988 996 688
Q ss_pred eCCCCHhHHHHHHHHHHh
Q 043051 475 VGLPSKDGRFAILKVHAR 492 (845)
Q Consensus 475 v~~Pd~eeR~eIL~~~l~ 492 (845)
++..+.++...|......
T Consensus 1687 ~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1687 MDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred ecccccchHHHHHHhhCC
Confidence 999988888888775554
No 299
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.34 E-value=0.00014 Score=72.87 Aligned_cols=59 Identities=27% Similarity=0.415 Sum_probs=36.4
Q ss_pred ccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---eEEeechhH
Q 043051 308 FAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVP---FFAANGTDF 375 (845)
Q Consensus 308 VvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~p---fi~vs~sdf 375 (845)
++|.++..++|...+.. . ....++.++|+|++|+|||+|.+++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~-~--------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-A--------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-T--------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-H--------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 57888777766666541 1 12236889999999999999999997665332 777777765
No 300
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.33 E-value=0.0014 Score=69.23 Aligned_cols=39 Identities=28% Similarity=0.496 Sum_probs=31.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCeEEeech
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGE---AGVPFFAANGT 373 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~e---lg~pfi~vs~s 373 (845)
|.+.+..++++||||||||+++..++.+ .|.+.++++..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 5666778999999999999999999654 36777777653
No 301
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.31 E-value=0.0025 Score=73.78 Aligned_cols=194 Identities=13% Similarity=0.126 Sum_probs=97.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHH-------hh--------hhh-h----hhhHHHHHHH
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVE-------MF--------VGV-A----ASRVKDLFAS 393 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~-------~~--------vG~-~----~~~vr~lF~~ 393 (845)
..|..++|+|++|+|||+++..+|..+ |..+..+++..+.. .+ .+. . ...+++.++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 358899999999999999999998766 56666666643321 00 110 0 1123444455
Q ss_pred HHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccE--
Q 043051 394 ARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDK-- 471 (845)
Q Consensus 394 A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr-- 471 (845)
+... .+|+||....+. .+...-..|..+.... .....++|+-++...+.++.+ + +|..
T Consensus 173 ~~~~--DvVIIDTAGr~~----------~d~~lm~El~~l~~~~----~pdevlLVvda~~gq~av~~a--~--~F~~~l 232 (437)
T PRK00771 173 FKKA--DVIIVDTAGRHA----------LEEDLIEEMKEIKEAV----KPDEVLLVIDATIGQQAKNQA--K--AFHEAV 232 (437)
T ss_pred hhcC--CEEEEECCCccc----------chHHHHHHHHHHHHHh----cccceeEEEeccccHHHHHHH--H--HHHhcC
Confidence 4443 699999875541 1222222232332221 123335555555543333322 1 2332
Q ss_pred ---EEEeCCCCHhHHHHHHHHHHh--hhccc-------chhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHH--------
Q 043051 472 ---IVRVGLPSKDGRFAILKVHAR--NKYFR-------SEEEKDVLLQEIAELTEDFTGAELQNILNEAGIL-------- 531 (845)
Q Consensus 472 ---~I~v~~Pd~eeR~eIL~~~l~--~~~l~-------~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~-------- 531 (845)
.+-+...|...|---+-.... +.++. .++....+.+.++.+.-|+ .|+..+++.|...
T Consensus 233 ~i~gvIlTKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilgm--gd~~~l~e~~~~~~~~~~~~~ 310 (437)
T PRK00771 233 GIGGIIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGM--GDLESLLEKVEEALDEEEEEK 310 (437)
T ss_pred CCCEEEEecccCCCcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhCC--CChHHHHHHHHHhhhHHHHHH
Confidence 344556666655433222221 22211 1222334566777766552 3677777655322
Q ss_pred -HHHcCCCccCHHHHHHHHHhc
Q 043051 532 -TARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 532 -A~r~~~~~It~edl~~Al~r~ 552 (845)
+.+-.....|.+||.+-+..+
T Consensus 311 ~~~~~~~~~f~l~d~~~q~~~~ 332 (437)
T PRK00771 311 DVEKMMKGKFTLKDMYKQLEAM 332 (437)
T ss_pred HHHHHHcCCcCHHHHHHHHHHH
Confidence 111122345666666666655
No 302
>PF14516 AAA_35: AAA-like domain
Probab=97.29 E-value=0.011 Score=66.08 Aligned_cols=171 Identities=13% Similarity=0.086 Sum_probs=94.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHH-------hhhh------------------------hhhh
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVE-------MFVG------------------------VAAS 385 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~-------~~vG------------------------~~~~ 385 (845)
.-+.|.||..+|||+|...+...+ |...+++++..+.. .|.. ....
T Consensus 32 ~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~ 111 (331)
T PF14516_consen 32 SYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKI 111 (331)
T ss_pred CEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChh
Confidence 468999999999999999886554 77777777654311 1100 0112
Q ss_pred hHHHHHHHH---HhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCc---ccCCcEEEEEEc-CCCCC
Q 043051 386 RVKDLFASA---RSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFK---VSTSQVLVIGAT-NRLDI 458 (845)
Q Consensus 386 ~vr~lF~~A---~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~---~~~~~ViVIaaT-N~pd~ 458 (845)
+....|+.. ....|-||+|||||.+... ......+..+|..+-.-. ....++.+|.+. ..+..
T Consensus 112 ~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~----------~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~ 181 (331)
T PF14516_consen 112 SCTEYFEEYLLKQIDKPLVLFIDEIDRLFEY----------PQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYI 181 (331)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEechhhhccC----------cchHHHHHHHHHHHHHhcccCcccceEEEEEecCccccc
Confidence 233344432 2246889999999999532 122233444444432111 111233333333 22222
Q ss_pred CChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHH
Q 043051 459 LDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEA 528 (845)
Q Consensus 459 LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneA 528 (845)
....-.+|-.+...|.++.-+.++-..+++.|-.. . ....++.+-..|.|. +--+..+|...
T Consensus 182 ~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~-----~~~~~~~l~~~tgGh-P~Lv~~~~~~l 243 (331)
T PF14516_consen 182 ILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--F-----SQEQLEQLMDWTGGH-PYLVQKACYLL 243 (331)
T ss_pred ccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--C-----CHHHHHHHHHHHCCC-HHHHHHHHHHH
Confidence 21122344444556777777888888877665322 1 233388888888884 44555555444
No 303
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.29 E-value=0.0015 Score=74.91 Aligned_cols=168 Identities=24% Similarity=0.278 Sum_probs=87.2
Q ss_pred cccccHHHHHHHHHHHHHh---hCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhhhhhh
Q 043051 307 DFAGQEYIKRELQEIVRIL---KNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVA 383 (845)
Q Consensus 307 dVvG~de~k~eL~eiv~~L---k~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~vG~~ 383 (845)
.|.|.+.+|+.+.=++--- .-|+ .+..+---+|||.|.|||-|+-|.|-+-+-+-+-+|. +|. .+.-.|.+
T Consensus 332 SIfG~~DiKkAiaClLFgGsrK~LpD---g~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYT-SGK--GSSAAGLT 405 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSRKRLPD---GVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYT-SGK--GSSAAGLT 405 (729)
T ss_pred hhcCchhHHHHHHHHhhcCccccCCC---cceeccceeEEEecCCchhHHHHHHHHHhcCceEEEe-cCC--Ccccccce
Confidence 4678888888765433211 1111 1112223579999999999999999987665444432 211 11122333
Q ss_pred hhhHHHHHH-----H--H-HhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcc-cCCcEEEEEEcC
Q 043051 384 ASRVKDLFA-----S--A-RSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKV-STSQVLVIGATN 454 (845)
Q Consensus 384 ~~~vr~lF~-----~--A-~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~-~~~~ViVIaaTN 454 (845)
++-+|+--. . | --...+|++|||+|.+-.. +. -.-|...++.-..+-.. |... -+.+.-|+||.|
T Consensus 406 ASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~---DR-VAIHEAMEQQTISIAKA--GITT~LNSRtSVLAAAN 479 (729)
T KOG0481|consen 406 ASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMRED---DR-VAIHEAMEQQTISIAKA--GITTTLNSRTSVLAAAN 479 (729)
T ss_pred eeEEecCCcceEEEecceEEEecCCEEEeehhhccCch---hh-hHHHHHHHhhhHHHhhh--cceeeecchhhhhhhcC
Confidence 332222110 0 0 0113579999999998211 11 12233333222222211 2221 233467889998
Q ss_pred CCC-----------CC--ChhhhccCcccEEEEeCCCCHhHHHHHHH
Q 043051 455 RLD-----------IL--DPALLRKGRFDKIVRVGLPSKDGRFAILK 488 (845)
Q Consensus 455 ~pd-----------~L--DpALlRpgRFdr~I~v~~Pd~eeR~eIL~ 488 (845)
++. .+ -+.+++ |||.++-+.---.++|-..|.
T Consensus 480 pvfGRyDd~Kt~~dNIDf~~TILS--RFDmIFIVKD~h~~~~D~~lA 524 (729)
T KOG0481|consen 480 PVFGRYDDTKTGEDNIDFMPTILS--RFDMIFIVKDEHDEERDITLA 524 (729)
T ss_pred CccccccccCCcccccchhhhHhh--hccEEEEEeccCcchhhhHHH
Confidence 642 23 488999 999877776544444444333
No 304
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.26 E-value=0.0029 Score=72.17 Aligned_cols=167 Identities=10% Similarity=0.046 Sum_probs=88.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc-------CCCeEEeechhHHH-------hh---------hhhhhhhHHHHHHHH
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA-------GVPFFAANGTDFVE-------MF---------VGVAASRVKDLFASA 394 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el-------g~pfi~vs~sdf~~-------~~---------vG~~~~~vr~lF~~A 394 (845)
.|+.++|+||+|+|||+++..+|..+ |..+..+++..+.. .| +......+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 46789999999999999999998754 34444444433221 11 111223333333333
Q ss_pred HhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhcc--CcccEE
Q 043051 395 RSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRK--GRFDKI 472 (845)
Q Consensus 395 ~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRp--gRFdr~ 472 (845)
....+|+||++..... +...-..+..++... ......++|+.+|.....+...+.+- ..++ .
T Consensus 253 --~~~DlVLIDTaGr~~~----------~~~~l~el~~~l~~~---~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~-~ 316 (388)
T PRK12723 253 --KDFDLVLVDTIGKSPK----------DFMKLAEMKELLNAC---GRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYK-T 316 (388)
T ss_pred --CCCCEEEEcCCCCCcc----------CHHHHHHHHHHHHhc---CCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCC-E
Confidence 2347999999876521 222223344444432 22224578888888777676444431 1123 4
Q ss_pred EEeCCCCHhHHHHHHHHHHhhhccc----------chhhhhhHHHHHHHHccCCcHHH
Q 043051 473 VRVGLPSKDGRFAILKVHARNKYFR----------SEEEKDVLLQEIAELTEDFTGAE 520 (845)
Q Consensus 473 I~v~~Pd~eeR~eIL~~~l~~~~l~----------~~~~~d~dl~~LA~~t~GfSgaD 520 (845)
+-+...|...+.-.+-..+...++. .++....+...+++...||+-++
T Consensus 317 ~I~TKlDet~~~G~~l~~~~~~~~Pi~yit~Gq~vPeDl~~~~~~~~~~~l~g~~~~~ 374 (388)
T PRK12723 317 VIFTKLDETTCVGNLISLIYEMRKEVSYVTDGQIVPHNISIAEPLTFIKKINGYRISD 374 (388)
T ss_pred EEEEeccCCCcchHHHHHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHhcCCCccc
Confidence 5566777766655443333222211 01122233455666666665543
No 305
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.25 E-value=0.00044 Score=74.61 Aligned_cols=100 Identities=24% Similarity=0.349 Sum_probs=62.9
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---eEEeec-hhH
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVP---FFAANG-TDF 375 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~p---fi~vs~-sdf 375 (845)
....+++++.-.....+.+.+++...-. ...++++.||+|+|||++++++..+.... ++.+.. .++
T Consensus 98 ~~~~sle~l~~~~~~~~~~~~~l~~~v~----------~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 98 SKPFSLEDLGESGSIPEEIAEFLRSAVR----------GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp SS--CHCCCCHTHHCHHHHHHHHHHCHH----------TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cccccHhhccCchhhHHHHHHHHhhccc----------cceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 4567899998777666666665544311 13579999999999999999999887433 333321 111
Q ss_pred HHh------h-hhhhhhhHHHHHHHHHhcCCcEEEEcccch
Q 043051 376 VEM------F-VGVAASRVKDLFASARSFAPSIIFIDEIDA 409 (845)
Q Consensus 376 ~~~------~-vG~~~~~vr~lF~~A~~~aP~ILfIDEIDa 409 (845)
.-. + .........+++..+....|.+|+|+||..
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 100 0 012345677888888888999999999854
No 306
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.24 E-value=0.0044 Score=69.33 Aligned_cols=160 Identities=19% Similarity=0.252 Sum_probs=91.6
Q ss_pred ccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH------hh
Q 043051 306 DDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE------MF 379 (845)
Q Consensus 306 ~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~------~~ 379 (845)
..|.+.+.....|..++-. ..-..|-.+.|||-.|||||.+.+.+-+.++.|.+.++|-+... ..
T Consensus 6 ~~v~~Re~qi~~L~~Llg~---------~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGN---------NSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred cCccchHHHHHHHHHHhCC---------CCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHH
Confidence 4566777666666555421 11245788999999999999999999999999999999865432 11
Q ss_pred -------------hhhhhhhHHH---HHHH--HHhcC--CcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcC
Q 043051 380 -------------VGVAASRVKD---LFAS--ARSFA--PSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDG 439 (845)
Q Consensus 380 -------------vG~~~~~vr~---lF~~--A~~~a--P~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg 439 (845)
+......+.+ +|.+ +..+. .-.|++|.+|.+- +. ....-+.+.++-+-++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lr------D~---~a~ll~~l~~L~el~~- 146 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALR------DM---DAILLQCLFRLYELLN- 146 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhh------cc---chHHHHHHHHHHHHhC-
Confidence 1111122222 3333 22222 3467889999992 11 1222333333322221
Q ss_pred CcccCCcEEEEEEcCCCCCCChhhhccCccc-EEEEeCCCCHhHHHHHHHHH
Q 043051 440 FKVSTSQVLVIGATNRLDILDPALLRKGRFD-KIVRVGLPSKDGRFAILKVH 490 (845)
Q Consensus 440 ~~~~~~~ViVIaaTN~pd~LDpALlRpgRFd-r~I~v~~Pd~eeR~eIL~~~ 490 (845)
. ..+.+|........ .-+.+-|-++ ..++||.|+.++...|+..-
T Consensus 147 ---~-~~i~iils~~~~e~--~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 147 ---E-PTIVIILSAPSCEK--QYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ---C-CceEEEEeccccHH--HhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 1 22444433322221 1222223333 36899999999999998643
No 307
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.23 E-value=0.0017 Score=72.37 Aligned_cols=79 Identities=24% Similarity=0.278 Sum_probs=49.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCeEEeechhHHHh-h---hhh------------hhhhHHHHHHHHH
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGE---AGVPFFAANGTDFVEM-F---VGV------------AASRVKDLFASAR 395 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~e---lg~pfi~vs~sdf~~~-~---vG~------------~~~~vr~lF~~A~ 395 (845)
|.+..+-+.++||||||||+||-.++.+ .|.+.++++..+-.+. + .|. .+..+..+-..++
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 3444456889999999999999988644 3677777776331110 0 111 1111222222234
Q ss_pred hcCCcEEEEcccchhccC
Q 043051 396 SFAPSIIFIDEIDAIGSK 413 (845)
Q Consensus 396 ~~aP~ILfIDEIDaL~~~ 413 (845)
...+.+|+||-+-++.+.
T Consensus 131 s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 131 SGAVDLIVVDSVAALVPK 148 (325)
T ss_pred ccCCCEEEEcchHhhccc
Confidence 567899999999999753
No 308
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.23 E-value=0.00074 Score=69.84 Aligned_cols=98 Identities=23% Similarity=0.396 Sum_probs=53.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHH----hhhhhhhhhHHHHHHHHHh---------cCCcEEE
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVE----MFVGVAASRVKDLFASARS---------FAPSIIF 403 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~----~~vG~~~~~vr~lF~~A~~---------~aP~ILf 403 (845)
+-.+|.||||||||++++.++..+ |..++.+..+.-.. .-.|.....+..++..... ....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 357889999999999999986543 66777776553221 1122233344444333211 2347999
Q ss_pred EcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCC
Q 043051 404 IDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNR 455 (845)
Q Consensus 404 IDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~ 455 (845)
|||+..+. ...+..++..... ...++++++=.+.
T Consensus 99 VDEasmv~---------------~~~~~~ll~~~~~---~~~klilvGD~~Q 132 (196)
T PF13604_consen 99 VDEASMVD---------------SRQLARLLRLAKK---SGAKLILVGDPNQ 132 (196)
T ss_dssp ESSGGG-B---------------HHHHHHHHHHS-T----T-EEEEEE-TTS
T ss_pred EecccccC---------------HHHHHHHHHHHHh---cCCEEEEECCcch
Confidence 99998882 2234555555422 2345777776654
No 309
>PRK04296 thymidine kinase; Provisional
Probab=97.21 E-value=0.0019 Score=66.48 Aligned_cols=70 Identities=17% Similarity=0.135 Sum_probs=42.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCeEEeech----hHHH---hhhhhh-----hhhHHHHHHHHH--hcCCcEEE
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGT----DFVE---MFVGVA-----ASRVKDLFASAR--SFAPSIIF 403 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~el---g~pfi~vs~s----df~~---~~vG~~-----~~~vr~lF~~A~--~~aP~ILf 403 (845)
-.+++||||+|||+++..++..+ +..++.+.++ .... ...|.. .....+++..+. ...+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 47899999999999998887665 6666655431 1100 111211 122344444443 23567999
Q ss_pred Ecccchh
Q 043051 404 IDEIDAI 410 (845)
Q Consensus 404 IDEIDaL 410 (845)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999766
No 310
>PRK04040 adenylate kinase; Provisional
Probab=97.20 E-value=0.0042 Score=63.97 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=28.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc--CCCeEEeechhH
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA--GVPFFAANGTDF 375 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el--g~pfi~vs~sdf 375 (845)
|+-++++|+||||||++++.++..+ +.+++ +..++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~--~~g~~ 38 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV--NFGDV 38 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE--ecchH
Confidence 5679999999999999999999999 55554 44443
No 311
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.17 E-value=0.00088 Score=67.82 Aligned_cols=32 Identities=28% Similarity=0.572 Sum_probs=29.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAGVPFFAAN 371 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg~pfi~vs 371 (845)
++++|+|++|+|||++.|++|+.++.+|+-.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46999999999999999999999999998654
No 312
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.17 E-value=0.0047 Score=66.45 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=60.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCC------eEEeech------hHHHhh--------hhh-hhhhH---HHHHHHH
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVP------FFAANGT------DFVEMF--------VGV-AASRV---KDLFASA 394 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~p------fi~vs~s------df~~~~--------vG~-~~~~v---r~lF~~A 394 (845)
..-++|.||+|||||+|++.+++..... ++.+.+. +|.... .+. ...++ ..+...|
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a 95 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKA 95 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 3458999999999999999999877542 3332221 222221 111 11111 2333333
Q ss_pred H----hcCCcEEEEcccchhccCC-------CCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcC
Q 043051 395 R----SFAPSIIFIDEIDAIGSKR-------GGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATN 454 (845)
Q Consensus 395 ~----~~aP~ILfIDEIDaL~~~R-------~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN 454 (845)
. .....+|||||+..+...- +..-.+|........+-+++..- +.....+.+.+++|..
T Consensus 96 ~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~A-r~~~~~gsIt~l~T~~ 165 (249)
T cd01128 96 KRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAA-RNIEEGGSLTIIATAL 165 (249)
T ss_pred HHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHh-cCCCCCCceEEeeehe
Confidence 2 2346799999999986542 11111222333334445666433 3222355577775543
No 313
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.17 E-value=0.0013 Score=74.46 Aligned_cols=111 Identities=17% Similarity=0.203 Sum_probs=58.8
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCC-----C-eEEeech---h---HHHhhh---------hhhhhhHH---HHHHHHHh-
Q 043051 342 VLLHGPPGTGKTLLAKAIAGEAGV-----P-FFAANGT---D---FVEMFV---------GVAASRVK---DLFASARS- 396 (845)
Q Consensus 342 VLL~GPPGTGKT~LArALA~elg~-----p-fi~vs~s---d---f~~~~v---------G~~~~~vr---~lF~~A~~- 396 (845)
.+|+||||||||+|++.|++.... . ++.+.+. + +..... .....+++ .+++.|+.
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~ 251 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRL 251 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999987643 2 2223221 1 111111 11122333 34444433
Q ss_pred ---cCCcEEEEcccchhccCCCC-------CCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEc
Q 043051 397 ---FAPSIIFIDEIDAIGSKRGG-------PDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGAT 453 (845)
Q Consensus 397 ---~aP~ILfIDEIDaL~~~R~~-------~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaT 453 (845)
....+||||||+.+.+.... .-.+|........+-.++...... ...+.+.+|+|.
T Consensus 252 ~e~G~dVlL~iDsItR~arAqrev~~~sG~~~sgG~~~~~~~~~~r~f~~Arn~-e~~GSlT~i~T~ 317 (416)
T PRK09376 252 VEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFFGAARNI-EEGGSLTIIATA 317 (416)
T ss_pred HHcCCCEEEEEEChHHHHHHHHhhhhccCCCCCCCCChhHhhhhHHHHHhhcCC-CCCcceEEEEEE
Confidence 24569999999999764321 111222333333344455443222 234557777764
No 314
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.16 E-value=0.001 Score=69.31 Aligned_cols=150 Identities=25% Similarity=0.397 Sum_probs=67.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH-hhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCC
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE-MFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDI 419 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~-~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~ 419 (845)
-++|+||+|||||.+|-++|+..|.|++..+.-.... ..+|.+.....+ +.. -+ =+|+||-..-
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~e-l~~----~~-RiyL~~r~l~--------- 67 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSE-LKG----TR-RIYLDDRPLS--------- 67 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGG-GTT-----E-EEES----GG---------
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHH-Hcc----cc-eeeecccccc---------
Confidence 3789999999999999999999999999988754433 233322111111 111 11 2778863322
Q ss_pred CCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCC-----ChhhhccCcccE-EEEeCCCCHhHHHHHHHHHHhh
Q 043051 420 GGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDIL-----DPALLRKGRFDK-IVRVGLPSKDGRFAILKVHARN 493 (845)
Q Consensus 420 ~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~L-----DpALlRpgRFdr-~I~v~~Pd~eeR~eIL~~~l~~ 493 (845)
.|.-...+....|+..++.... .+.+|+=+.+ ...| |+.... .|.. +..++.|+.+....-.+...++
T Consensus 68 -~G~i~a~ea~~~Li~~v~~~~~-~~~~IlEGGS--ISLl~~m~~~~~w~~--~f~w~i~rl~l~d~~~f~~ra~~Rv~~ 141 (233)
T PF01745_consen 68 -DGIINAEEAHERLISEVNSYSA-HGGLILEGGS--ISLLNCMAQDPYWSL--DFRWHIRRLRLPDEEVFMARAKRRVRQ 141 (233)
T ss_dssp -G-S--HHHHHHHHHHHHHTTTT-SSEEEEEE----HHHHHHHHH-TTTSS--SSEEEEEE-----HHHHHHHHHHHHHH
T ss_pred -CCCcCHHHHHHHHHHHHHhccc-cCceEEeCch--HHHHHHHHhcccccC--CCeEEEEEEECCChHHHHHHHHHHHHH
Confidence 2233344455556666666655 3424443333 2222 111112 2322 4567788887776666655555
Q ss_pred hcccchhhhhhHHHHHHHH
Q 043051 494 KYFRSEEEKDVLLQEIAEL 512 (845)
Q Consensus 494 ~~l~~~~~~d~dl~~LA~~ 512 (845)
.-.. +......+++++..
T Consensus 142 ML~p-~~~~~Sll~EL~~l 159 (233)
T PF01745_consen 142 MLRP-DSSGPSLLEELVAL 159 (233)
T ss_dssp HHS---SSS--HHHHHHHH
T ss_pred hcCC-CCCCCcHHHHHHHH
Confidence 4322 11223445555553
No 315
>PRK13947 shikimate kinase; Provisional
Probab=97.15 E-value=0.00039 Score=69.42 Aligned_cols=31 Identities=32% Similarity=0.485 Sum_probs=28.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAAN 371 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~vs 371 (845)
+++|.|+||||||++|+.+|..+|.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5899999999999999999999999997654
No 316
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.15 E-value=0.00061 Score=66.45 Aligned_cols=38 Identities=29% Similarity=0.570 Sum_probs=30.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhhh
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFV 380 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~v 380 (845)
+++|+|+||+|||++|+.+|..++.+++..+ .+.....
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d--~~~~~~~ 38 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD--ELIEQRA 38 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch--HHHHHHc
Confidence 4799999999999999999999999988544 4444333
No 317
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.13 E-value=0.0057 Score=63.51 Aligned_cols=35 Identities=26% Similarity=0.398 Sum_probs=28.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhH
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDF 375 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf 375 (845)
|+-+++.|+||+|||++|+.+|.+++.++ +..+|+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~--~~~~D~ 37 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI--VLSGDY 37 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE--EehhHH
Confidence 45789999999999999999999998765 344444
No 318
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.12 E-value=0.0026 Score=61.28 Aligned_cols=52 Identities=25% Similarity=0.332 Sum_probs=39.4
Q ss_pred ccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 043051 306 DDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 306 ~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el 363 (845)
..|.||.-+++.+...+.. +.++. -+.|.-+-|.||||||||.+++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~------p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPN------PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCC------CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3689999999888776654 44331 2235556699999999999999999985
No 319
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.10 E-value=0.0041 Score=69.92 Aligned_cols=161 Identities=16% Similarity=0.140 Sum_probs=82.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCC--eEEeechhHHHhh-------h-hhh-------h----hhHHHHHHHH
Q 043051 336 IYCPKGVLLHGPPGTGKTLLAKAIAGEAGVP--FFAANGTDFVEMF-------V-GVA-------A----SRVKDLFASA 394 (845)
Q Consensus 336 ~~~PrgVLL~GPPGTGKT~LArALA~elg~p--fi~vs~sdf~~~~-------v-G~~-------~----~~vr~lF~~A 394 (845)
-.+|+|++|||.-|||||+|.-..-..+-.- =-.+...+|+... . ..+ . .-+.-+-+..
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eI 190 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEI 190 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHH
Confidence 3469999999999999999998876544210 0011112222110 0 000 0 0111111111
Q ss_pred HhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCC-CCCChhhhccCcccEEE
Q 043051 395 RSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRL-DILDPALLRKGRFDKIV 473 (845)
Q Consensus 395 ~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~p-d~LDpALlRpgRFdr~I 473 (845)
. ...++|++||+.-- +-.-.-.|.+|+..+- ..+ |+++||+||. +.|...=+. +..
T Consensus 191 a-~ea~lLCFDEfQVT------------DVADAmiL~rLf~~Lf----~~G-vVlvATSNR~P~dLYknGlQ-----R~~ 247 (467)
T KOG2383|consen 191 A-EEAILLCFDEFQVT------------DVADAMILKRLFEHLF----KNG-VVLVATSNRAPEDLYKNGLQ-----REN 247 (467)
T ss_pred h-hhceeeeechhhhh------------hHHHHHHHHHHHHHHH----hCC-eEEEEeCCCChHHHhhcchh-----hhh
Confidence 1 12479999998653 1122334556666541 234 9999999984 444322222 222
Q ss_pred EeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHcc---CCcHH-HHHHHHHHHH
Q 043051 474 RVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTE---DFTGA-ELQNILNEAG 529 (845)
Q Consensus 474 ~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~---GfSga-DL~~LvneAa 529 (845)
.+| -..+|+.++.-..+. +.+|....++... -|.+. |...++++--
T Consensus 248 F~P------fI~~L~~rc~vi~ld----S~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~f 297 (467)
T KOG2383|consen 248 FIP------FIALLEERCKVIQLD----SGVDYRRKAKSAGENYYFISETDVETVLKEWF 297 (467)
T ss_pred hhh------HHHHHHHhheEEecC----CccchhhccCCCCceeEecChhhHHHHHHHHH
Confidence 222 245666666655554 4566663333221 13444 7777777654
No 320
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.10 E-value=0.00046 Score=76.07 Aligned_cols=69 Identities=25% Similarity=0.379 Sum_probs=47.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC-----CCeEEeech-hHH-------HhhhhhhhhhHHHHHHHHHhcCCcEEEEcc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAG-----VPFFAANGT-DFV-------EMFVGVAASRVKDLFASARSFAPSIIFIDE 406 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg-----~pfi~vs~s-df~-------~~~vG~~~~~vr~lF~~A~~~aP~ILfIDE 406 (845)
++++++||+|+|||++++++++... ..++.+--. ++. ....+.....+.+++..+..+.|..|++.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 5899999999999999999998762 233333211 111 111111222677889999899999999999
Q ss_pred cc
Q 043051 407 ID 408 (845)
Q Consensus 407 ID 408 (845)
+-
T Consensus 213 iR 214 (299)
T TIGR02782 213 VR 214 (299)
T ss_pred cC
Confidence 74
No 321
>PRK03839 putative kinase; Provisional
Probab=97.09 E-value=0.00042 Score=70.08 Aligned_cols=31 Identities=29% Similarity=0.542 Sum_probs=28.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAAN 371 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~vs 371 (845)
-|+|.|+||+||||+++.+|+.++.+|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999999997644
No 322
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.09 E-value=0.0018 Score=68.04 Aligned_cols=40 Identities=23% Similarity=0.172 Sum_probs=30.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCeEEeechh
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---------GVPFFAANGTD 374 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---------g~pfi~vs~sd 374 (845)
|.+...-+.|+||||||||+++..+|... +...+++++.+
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 45556678999999999999999997543 25667776543
No 323
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.08 E-value=0.0035 Score=65.73 Aligned_cols=39 Identities=36% Similarity=0.444 Sum_probs=29.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCeEEeech
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA----GVPFFAANGT 373 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el----g~pfi~vs~s 373 (845)
|.+.+..+|+.||||||||+|+..++.+. |-+.++++..
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~e 57 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFE 57 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESS
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEec
Confidence 55666789999999999999999875432 7888877753
No 324
>PRK13948 shikimate kinase; Provisional
Probab=97.08 E-value=0.00085 Score=68.79 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=35.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhhhh
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVG 381 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~vG 381 (845)
++|..++|.|++|||||++++.+|+.+|.+|+..+ .+.+...|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g 50 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTG 50 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHh
Confidence 35689999999999999999999999999998554 44554444
No 325
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.07 E-value=0.0043 Score=72.29 Aligned_cols=78 Identities=23% Similarity=0.380 Sum_probs=54.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHhh------hhh--------hhhhHHHHHHHHHhc
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEMF------VGV--------AASRVKDLFASARSF 397 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~~------vG~--------~~~~vr~lF~~A~~~ 397 (845)
|..+..-+||+|+||+|||+|+..+|... +.+++++++.+-.+.. .|. ....+..+.+.+.+.
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 45555678999999999999999997654 4678888875433211 111 122345666666777
Q ss_pred CCcEEEEcccchhcc
Q 043051 398 APSIIFIDEIDAIGS 412 (845)
Q Consensus 398 aP~ILfIDEIDaL~~ 412 (845)
.|.+|+||.|..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999999853
No 326
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.05 E-value=0.00083 Score=69.51 Aligned_cols=67 Identities=24% Similarity=0.409 Sum_probs=42.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCC----eEEeec-hhHHH---------hhhhhhhhhHHHHHHHHHhcCCcEEEEcc
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVP----FFAANG-TDFVE---------MFVGVAASRVKDLFASARSFAPSIIFIDE 406 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~p----fi~vs~-sdf~~---------~~vG~~~~~vr~lF~~A~~~aP~ILfIDE 406 (845)
-++|+||+|+|||++++++++....+ ++.+.. .++.. .-+|.......+.+..+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 37899999999999999998877422 222211 11110 01122233455666677777899999999
Q ss_pred c
Q 043051 407 I 407 (845)
Q Consensus 407 I 407 (845)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 7
No 327
>PRK00625 shikimate kinase; Provisional
Probab=97.05 E-value=0.00054 Score=69.65 Aligned_cols=31 Identities=39% Similarity=0.658 Sum_probs=28.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAAN 371 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~vs 371 (845)
.|+|+|.||+|||++++.+|+.++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998765
No 328
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.04 E-value=0.0038 Score=62.94 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=22.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHh
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA~e 362 (845)
.+.-.++|+||+|||||+|.|++|.-
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhc
Confidence 34456899999999999999999974
No 329
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.04 E-value=0.0028 Score=65.91 Aligned_cols=112 Identities=29% Similarity=0.453 Sum_probs=65.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCC
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKR 414 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R 414 (845)
|.+....++|.|+-|+|||++.+.|+.+ ++.-+.... .. ++....... .-|+.|||++.+.++
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~-------~~---kd~~~~l~~--~~iveldEl~~~~k~- 110 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDF-------DD---KDFLEQLQG--KWIVELDELDGLSKK- 110 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHH----hccCccccC-------CC---cHHHHHHHH--hHheeHHHHhhcchh-
Confidence 5555667899999999999999999766 221111110 00 111111111 148899999998421
Q ss_pred CCCCCCCCchHHHHHHHHHHHh-hcCCc--------ccCCcEEEEEEcCCCCCC-ChhhhccCcccEEEEeCC
Q 043051 415 GGPDIGGGGAEREQGLLQILTE-MDGFK--------VSTSQVLVIGATNRLDIL-DPALLRKGRFDKIVRVGL 477 (845)
Q Consensus 415 ~~~~~~~~~~e~~~~L~qLL~e-mdg~~--------~~~~~ViVIaaTN~pd~L-DpALlRpgRFdr~I~v~~ 477 (845)
....|-.+++. .+.+. ..+...++|+|||..+.| |+.=-| ||= .|.+..
T Consensus 111 -----------~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf~-~v~v~~ 169 (198)
T PF05272_consen 111 -----------DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RFW-PVEVSK 169 (198)
T ss_pred -----------hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EEE-EEEEcC
Confidence 23455566654 11111 123357899999998866 666666 773 455544
No 330
>PRK13949 shikimate kinase; Provisional
Probab=97.03 E-value=0.00088 Score=67.71 Aligned_cols=31 Identities=42% Similarity=0.641 Sum_probs=29.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAAN 371 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~vs 371 (845)
.++|+||||+|||++++.+|+.++.+|+..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5899999999999999999999999998766
No 331
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.02 E-value=0.0026 Score=66.41 Aligned_cols=116 Identities=24% Similarity=0.189 Sum_probs=62.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---C------CCeEEeechhH-H-Hhh----h--h---------------h
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---G------VPFFAANGTDF-V-EMF----V--G---------------V 382 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---g------~pfi~vs~sdf-~-~~~----v--G---------------~ 382 (845)
|.+...-+.|+||||+|||+++..+|... + ...+++++.+- . ..+ . + .
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 45556678999999999999999997653 3 56667665431 0 000 0 0 0
Q ss_pred hhhhHHHHHHHH----HhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEc
Q 043051 383 AASRVKDLFASA----RSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGAT 453 (845)
Q Consensus 383 ~~~~vr~lF~~A----~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaT 453 (845)
....+..++... ....+++|+||-|..+....... .+...++...+.+++..+..+....+ +.||.+.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~--~~~~~~~~~~l~~~~~~L~~~a~~~~-~~vi~tn 166 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIG--RGMLAERARLLSQALRKLLRLADKFN-VAVVFTN 166 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcC--CchHHHHHHHHHHHHHHHHHHHHHhC-cEEEEEE
Confidence 111222223322 23467899999999886431100 01123344455555555544433333 5555544
No 332
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.01 E-value=0.0045 Score=77.92 Aligned_cols=177 Identities=20% Similarity=0.221 Sum_probs=98.4
Q ss_pred CCceEEEEcCCCChHHHHH-HHHHHhcCCCeEEeechhHHHhhhhhhhhhHHHHHHHHHhcC---------C------cE
Q 043051 338 CPKGVLLHGPPGTGKTLLA-KAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFA---------P------SI 401 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LA-rALA~elg~pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~a---------P------~I 401 (845)
.-++++++||||+|||+|. -++-.+.-..++.+|-+.-.. ++..++ ++++-..+- | .|
T Consensus 1493 t~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls-~Ler~t~yy~~tg~~~l~PK~~vK~lV 1566 (3164)
T COG5245 1493 TLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLS-VLERETEYYPNTGVVRLYPKPVVKDLV 1566 (3164)
T ss_pred ccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHH-HHHhhceeeccCCeEEEccCcchhheE
Confidence 3579999999999999964 567777777888777653211 122222 223221111 1 48
Q ss_pred EEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccC-------CcEEEEEEcCCCCCCChhhhccCccc---E
Q 043051 402 IFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVST-------SQVLVIGATNRLDILDPALLRKGRFD---K 471 (845)
Q Consensus 402 LfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~-------~~ViVIaaTN~pd~LDpALlRpgRFd---r 471 (845)
||-|||. +-..+. . ..... -.++.-|.+-.||-.+. .++++.+++|++...- ..--+.||- -
T Consensus 1567 LFcDeIn-Lp~~~~---y--~~~~v-I~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~g-Rv~~~eRf~r~~v 1638 (3164)
T COG5245 1567 LFCDEIN-LPYGFE---Y--YPPTV-IVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEG-RVKYYERFIRKPV 1638 (3164)
T ss_pred EEeeccC-Cccccc---c--CCCce-EEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcc-cCccHHHHhcCce
Confidence 9999999 533221 1 11111 11222233334554321 3589999999877432 011122333 2
Q ss_pred EEEeCCCCHhHHHHHHHHHHhhhcccchhhhhh---------HH--------HHHHHHccCCcHHHHHHHHHHH
Q 043051 472 IVRVGLPSKDGRFAILKVHARNKYFRSEEEKDV---------LL--------QEIAELTEDFTGAELQNILNEA 528 (845)
Q Consensus 472 ~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~---------dl--------~~LA~~t~GfSgaDL~~LvneA 528 (845)
.+.+..|.......|...++....+-.+..... .+ ...-....||+|++|-..++..
T Consensus 1639 ~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i 1712 (3164)
T COG5245 1639 FVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAI 1712 (3164)
T ss_pred EEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHH
Confidence 678889999999999887776543322111110 00 1111123589999999888744
No 333
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.01 E-value=0.0034 Score=67.59 Aligned_cols=38 Identities=24% Similarity=0.254 Sum_probs=29.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCeEEeec
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA----GVPFFAANG 372 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el----g~pfi~vs~ 372 (845)
|.....-++|.||||+|||+++..+|..+ |.++++++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 44455678999999999999999886653 667777765
No 334
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.99 E-value=0.0025 Score=59.24 Aligned_cols=24 Identities=46% Similarity=0.535 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el 363 (845)
++++++||+|+|||+++-+++.++
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999999887765
No 335
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.99 E-value=0.00072 Score=68.28 Aligned_cols=38 Identities=24% Similarity=0.484 Sum_probs=32.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE 377 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~ 377 (845)
+-++|.||||+|||++|++++..++.+++.++..++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~ 40 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIE 40 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHH
Confidence 46899999999999999999999998888776665544
No 336
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.99 E-value=0.0067 Score=64.48 Aligned_cols=39 Identities=33% Similarity=0.426 Sum_probs=30.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCeEEeech
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGE---AGVPFFAANGT 373 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~e---lg~pfi~vs~s 373 (845)
|......+|++||||||||++|..++.+ .|.+.++++..
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 5666778999999999999999876543 37777777654
No 337
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.98 E-value=0.015 Score=72.86 Aligned_cols=150 Identities=17% Similarity=0.232 Sum_probs=81.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeEEeech--h-----HHHh----hh----hh---h------------hhhHHH
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGT--D-----FVEM----FV----GV---A------------ASRVKD 389 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg~pfi~vs~s--d-----f~~~----~v----G~---~------------~~~vr~ 389 (845)
+-++++||+|.|||+++...+...+ ++..++.. + |... +. +. . ...+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 4589999999999999999887766 66555442 1 1111 10 00 0 011222
Q ss_pred HHHHHHh-cCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCC-hhhhccC
Q 043051 390 LFASARS-FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILD-PALLRKG 467 (845)
Q Consensus 390 lF~~A~~-~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LD-pALlRpg 467 (845)
++..... ..|.+|+|||+|.+- +......+..++..+ ..+ +.+|.++.....+. ..+...+
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~-----------~~~~~~~l~~l~~~~-----~~~-~~lv~~sR~~~~~~~~~l~~~~ 174 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLIT-----------NPEIHEAMRFFLRHQ-----PEN-LTLVVLSRNLPPLGIANLRVRD 174 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCC-----------ChHHHHHHHHHHHhC-----CCC-eEEEEEeCCCCCCchHhHHhcC
Confidence 3333222 468899999999981 223344566666553 223 44444553321221 1222112
Q ss_pred cccEEEEeC----CCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCC
Q 043051 468 RFDKIVRVG----LPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDF 516 (845)
Q Consensus 468 RFdr~I~v~----~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~Gf 516 (845)
..+.+. ..+.++-.+++...+.. .+ +......+.+.|.|+
T Consensus 175 ---~~~~l~~~~l~f~~~e~~~ll~~~~~~-~~-----~~~~~~~l~~~t~Gw 218 (903)
T PRK04841 175 ---QLLEIGSQQLAFDHQEAQQFFDQRLSS-PI-----EAAESSRLCDDVEGW 218 (903)
T ss_pred ---cceecCHHhCCCCHHHHHHHHHhccCC-CC-----CHHHHHHHHHHhCCh
Confidence 244555 55778888877654322 11 234456677777765
No 338
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.98 E-value=0.00096 Score=68.21 Aligned_cols=70 Identities=26% Similarity=0.407 Sum_probs=45.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC--CCeEEeech-hHH-------Hh------hhhhhhhhHHHHHHHHHhcCCcEE
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAG--VPFFAANGT-DFV-------EM------FVGVAASRVKDLFASARSFAPSII 402 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg--~pfi~vs~s-df~-------~~------~vG~~~~~vr~lF~~A~~~aP~IL 402 (845)
...++|.||+|+|||++++++++... ...+.+... ++. .. ..+.....+.+++..+....|.+|
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i 104 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRI 104 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEE
Confidence 45799999999999999999998763 122222111 110 00 001122356777888888899999
Q ss_pred EEcccc
Q 043051 403 FIDEID 408 (845)
Q Consensus 403 fIDEID 408 (845)
+++|+-
T Consensus 105 ~igEir 110 (186)
T cd01130 105 IVGEVR 110 (186)
T ss_pred EEEccC
Confidence 999973
No 339
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.98 E-value=0.007 Score=63.46 Aligned_cols=39 Identities=21% Similarity=0.176 Sum_probs=30.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeech
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGT 373 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~s 373 (845)
|.+....++|.|+||+|||+++..++.+. |.+.++++..
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 45556678999999999999999886543 7777777654
No 340
>PRK13946 shikimate kinase; Provisional
Probab=96.97 E-value=0.0019 Score=65.88 Aligned_cols=34 Identities=32% Similarity=0.588 Sum_probs=30.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAAN 371 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs 371 (845)
.++.|+|.|+||||||++++.+|+.+|.||+..+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 3578999999999999999999999999998665
No 341
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.96 E-value=0.00058 Score=67.24 Aligned_cols=32 Identities=34% Similarity=0.720 Sum_probs=29.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAGVPFFAAN 371 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg~pfi~vs 371 (845)
.++|++|-||||||+++..||...|.+++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 36999999999999999999999999988654
No 342
>PRK10536 hypothetical protein; Provisional
Probab=96.96 E-value=0.0036 Score=67.41 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=32.5
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 043051 302 GVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 302 ~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~e 362 (845)
...+..+.+.......+.. .+.+. .-+++.||+|||||+||.++|-+
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~---al~~~-----------~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLK---AIESK-----------QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred hcCCccccCCCHHHHHHHH---HHhcC-----------CeEEEECCCCCCHHHHHHHHHHH
Confidence 3455566666655554444 33321 25899999999999999999885
No 343
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.95 E-value=0.0044 Score=65.38 Aligned_cols=38 Identities=26% Similarity=0.346 Sum_probs=30.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCeEEeec
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA----GVPFFAANG 372 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el----g~pfi~vs~ 372 (845)
|..+..-++|.|+||+|||+++..++... +.++++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 66666679999999999999999886543 778877774
No 344
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.95 E-value=0.0022 Score=64.24 Aligned_cols=106 Identities=21% Similarity=0.241 Sum_probs=61.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCC--CeEEeechhH--------HHhhhhh-----hhhhHHHHHHHHHhcCCc
Q 043051 336 IYCPKGVLLHGPPGTGKTLLAKAIAGEAGV--PFFAANGTDF--------VEMFVGV-----AASRVKDLFASARSFAPS 400 (845)
Q Consensus 336 ~~~PrgVLL~GPPGTGKT~LArALA~elg~--pfi~vs~sdf--------~~~~vG~-----~~~~vr~lF~~A~~~aP~ 400 (845)
+.+...+.|.||+|+|||+|.+.+++.... --+.+++.+. ....++. +..+-+-.+..|....|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 334557899999999999999999987521 1122222111 1110110 112334456666667899
Q ss_pred EEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCC
Q 043051 401 IIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLD 457 (845)
Q Consensus 401 ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd 457 (845)
++++||--. +-+......+.+++.++. ..+ ..+|.+|+..+
T Consensus 103 illlDEP~~-----------~LD~~~~~~l~~~l~~~~----~~~-~tiii~sh~~~ 143 (163)
T cd03216 103 LLILDEPTA-----------ALTPAEVERLFKVIRRLR----AQG-VAVIFISHRLD 143 (163)
T ss_pred EEEEECCCc-----------CCCHHHHHHHHHHHHHHH----HCC-CEEEEEeCCHH
Confidence 999999643 224556677778877752 123 34555565544
No 345
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.94 E-value=0.00071 Score=68.32 Aligned_cols=34 Identities=26% Similarity=0.472 Sum_probs=28.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH
Q 043051 342 VLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE 377 (845)
Q Consensus 342 VLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~ 377 (845)
++|+||||+|||++|+.||...|++. ++.++++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d~lr 35 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGDLLR 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECChHHH
Confidence 68999999999999999999998654 45555544
No 346
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.93 E-value=0.0048 Score=64.93 Aligned_cols=71 Identities=27% Similarity=0.442 Sum_probs=45.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC--------CCeEEeech-hHHHhhhhh-------------hhhhHHHHHHHHHhc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAG--------VPFFAANGT-DFVEMFVGV-------------AASRVKDLFASARSF 397 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg--------~pfi~vs~s-df~~~~vG~-------------~~~~vr~lF~~A~~~ 397 (845)
.+.||.||||||||++.|-+|+-+. ..+..++-+ ++..-..|. ..-.-..+....+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 4689999999999999999988652 234444432 222211111 111223455666888
Q ss_pred CCcEEEEcccchh
Q 043051 398 APSIIFIDEIDAI 410 (845)
Q Consensus 398 aP~ILfIDEIDaL 410 (845)
+|.|+++|||...
T Consensus 218 ~PEViIvDEIGt~ 230 (308)
T COG3854 218 SPEVIIVDEIGTE 230 (308)
T ss_pred CCcEEEEeccccH
Confidence 9999999998664
No 347
>PHA02624 large T antigen; Provisional
Probab=96.93 E-value=0.0019 Score=76.44 Aligned_cols=124 Identities=18% Similarity=0.194 Sum_probs=68.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCC
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKR 414 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R 414 (845)
|.+.-+.++|+||||||||+++++|++.++...+.++++.-... |...-.....+++||++-.-.-..
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~ 494 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADN 494 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeecccccccc
Confidence 33344589999999999999999999999766777875542111 222111122477788775332211
Q ss_pred CCCCCCCCchHHHHHHHHHHHhhcCC-ccc-----CCc-----EEEEEEcCCCCCCChhhhccCcccEEEEeCC
Q 043051 415 GGPDIGGGGAEREQGLLQILTEMDGF-KVS-----TSQ-----VLVIGATNRLDILDPALLRKGRFDKIVRVGL 477 (845)
Q Consensus 415 ~~~~~~~~~~e~~~~L~qLL~emdg~-~~~-----~~~-----ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~ 477 (845)
.. ...|. ...-|..|-..+||. ..+ .++ --.|.||| ...|+..+.- ||..++.|..
T Consensus 495 ~~--Lp~G~--~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~N-ey~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 495 KD--LPSGQ--GMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMN-EYLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred cc--CCccc--ccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeec-CcccchhHHH--HHHHhccccc
Confidence 00 00000 011123344456665 110 000 12445666 4567888877 9988887753
No 348
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.93 E-value=0.0018 Score=72.83 Aligned_cols=69 Identities=20% Similarity=0.355 Sum_probs=45.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCC----CeEEee-chhHH---------HhhhhhhhhhHHHHHHHHHhcCCcEEEEc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAGV----PFFAAN-GTDFV---------EMFVGVAASRVKDLFASARSFAPSIIFID 405 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg~----pfi~vs-~sdf~---------~~~vG~~~~~vr~lF~~A~~~aP~ILfID 405 (845)
..++++||+|+|||++.+++.+...- .++.+. ..++. ..-+|.......+.+..+....|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 45899999999999999999887642 223221 11211 01123223345667777777899999999
Q ss_pred ccc
Q 043051 406 EID 408 (845)
Q Consensus 406 EID 408 (845)
|+-
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 983
No 349
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.93 E-value=0.0014 Score=66.27 Aligned_cols=27 Identities=44% Similarity=0.879 Sum_probs=22.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCe
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEA---GVPF 367 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~el---g~pf 367 (845)
.++|+|+||+||||+++.++..+ ++++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 37999999999999999998887 5543
No 350
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.92 E-value=0.0069 Score=63.54 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=20.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAG 361 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~ 361 (845)
++.++|+||.|+|||++.|.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 46799999999999999999973
No 351
>PRK14532 adenylate kinase; Provisional
Probab=96.91 E-value=0.00082 Score=68.41 Aligned_cols=36 Identities=31% Similarity=0.556 Sum_probs=29.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHh
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM 378 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~ 378 (845)
.++|.||||+|||++|+.||+..|.+++ +..++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHHH
Confidence 4899999999999999999999987665 55455443
No 352
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.89 E-value=0.00083 Score=64.78 Aligned_cols=30 Identities=33% Similarity=0.798 Sum_probs=28.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 043051 342 VLLHGPPGTGKTLLAKAIAGEAGVPFFAAN 371 (845)
Q Consensus 342 VLL~GPPGTGKT~LArALA~elg~pfi~vs 371 (845)
+.|.|+||||||++|+.||..++.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998776
No 353
>PRK14974 cell division protein FtsY; Provisional
Probab=96.89 E-value=0.0078 Score=67.48 Aligned_cols=73 Identities=26% Similarity=0.348 Sum_probs=44.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHH-------hh---hhh---------h-hhhHHHHHHHH
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVE-------MF---VGV---------A-ASRVKDLFASA 394 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~-------~~---vG~---------~-~~~vr~lF~~A 394 (845)
.|.-++|+||||+|||+++..+|..+ |..+..+++..+.. .+ .|. . ...+.+..+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 47789999999999999888887754 55665565542211 01 110 0 01223444444
Q ss_pred HhcCCcEEEEcccchh
Q 043051 395 RSFAPSIIFIDEIDAI 410 (845)
Q Consensus 395 ~~~aP~ILfIDEIDaL 410 (845)
+.....+|+||....+
T Consensus 219 ~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 219 KARGIDVVLIDTAGRM 234 (336)
T ss_pred HhCCCCEEEEECCCcc
Confidence 4444569999987665
No 354
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.87 E-value=0.06 Score=59.79 Aligned_cols=134 Identities=18% Similarity=0.247 Sum_probs=70.2
Q ss_pred HHHHHHHHHhc---CCcEEEEcccchhccCCCCCC--CCCCchHHHHHHHHHHHhh--cCCcccCCcEEE--EEEcC---
Q 043051 387 VKDLFASARSF---APSIIFIDEIDAIGSKRGGPD--IGGGGAEREQGLLQILTEM--DGFKVSTSQVLV--IGATN--- 454 (845)
Q Consensus 387 vr~lF~~A~~~---aP~ILfIDEIDaL~~~R~~~~--~~~~~~e~~~~L~qLL~em--dg~~~~~~~ViV--IaaTN--- 454 (845)
+..++++.+.. .|.++-||++.++...-...+ ...-+. .+-++..++..+ ....-..+ .+| +++|.
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~-~~L~l~~~f~~~~s~~~~~~nG-~~v~~l~~t~~~~ 219 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHP-HDLTLVRLFLDLLSGKRDFKNG-AVVTALAATSVSN 219 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccH-HHhhHHHHHHHHhcCccccCCC-eEEEEEecccccc
Confidence 34444444332 466778999999987632111 111122 223344444444 22222334 444 56653
Q ss_pred CCC--CCChhhhccCc------cc-------------EEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHc
Q 043051 455 RLD--ILDPALLRKGR------FD-------------KIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELT 513 (845)
Q Consensus 455 ~pd--~LDpALlRpgR------Fd-------------r~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t 513 (845)
.+. .++.+|....- |. ..|.++..+.+|-..++..+....-+..........+.+.-.+
T Consensus 220 ~~~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s 299 (309)
T PF10236_consen 220 APKSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSS 299 (309)
T ss_pred ccCCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhc
Confidence 233 45666654221 11 1678999999999999998887655442122333444555444
Q ss_pred cCCcHHHHHH
Q 043051 514 EDFTGAELQN 523 (845)
Q Consensus 514 ~GfSgaDL~~ 523 (845)
.| .++++.+
T Consensus 300 ~G-Np~el~k 308 (309)
T PF10236_consen 300 NG-NPRELEK 308 (309)
T ss_pred CC-CHHHhcc
Confidence 55 6666643
No 355
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.87 E-value=0.0011 Score=70.41 Aligned_cols=35 Identities=23% Similarity=0.461 Sum_probs=30.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAAN 371 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs 371 (845)
..|.-++|.||||+||||+|+.+|+.+|++++.+.
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 34566999999999999999999999998877554
No 356
>PRK06217 hypothetical protein; Validated
Probab=96.86 E-value=0.00094 Score=67.99 Aligned_cols=31 Identities=26% Similarity=0.552 Sum_probs=28.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAAN 371 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~vs 371 (845)
-|+|.|+||+|||++|++|+..++.|++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999987654
No 357
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.86 E-value=0.0037 Score=61.73 Aligned_cols=36 Identities=28% Similarity=0.621 Sum_probs=30.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHH
Q 043051 342 VLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVE 377 (845)
Q Consensus 342 VLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~ 377 (845)
++|+|+||+|||++|+.++..+ +.+.+.+++..+..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 6899999999999999999988 77777777765543
No 358
>PLN02200 adenylate kinase family protein
Probab=96.83 E-value=0.0012 Score=70.33 Aligned_cols=41 Identities=22% Similarity=0.305 Sum_probs=33.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE 377 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~ 377 (845)
+.+.|.-++|.||||||||++|+.+|..+|++ .++.++++.
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR 79 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR 79 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence 34557789999999999999999999999865 466666654
No 359
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.83 E-value=0.0056 Score=69.35 Aligned_cols=120 Identities=21% Similarity=0.302 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC---CCeEEeechhHHHhhh-hhhhhhH
Q 043051 312 EYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAG---VPFFAANGTDFVEMFV-GVAASRV 387 (845)
Q Consensus 312 de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg---~pfi~vs~sdf~~~~v-G~~~~~v 387 (845)
++.++.+..++..+.. ..|..+++.||.|||||++.+++...+. ..++.+..+......+ | ...+
T Consensus 4 ~eQ~~~~~~v~~~~~~---------~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~--G~T~ 72 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIEN---------EEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPG--GRTI 72 (364)
T ss_pred HHHHHHHHHHHHHHHc---------cCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccC--Ccch
Confidence 3444555555554433 2367899999999999999999977663 3344444333333222 1 1112
Q ss_pred HHHHHHH-------------------HhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCC---cccCC
Q 043051 388 KDLFASA-------------------RSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGF---KVSTS 445 (845)
Q Consensus 388 r~lF~~A-------------------~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~---~~~~~ 445 (845)
+..|..- ....-.+|+||||-.+. ...-..+.+.|..+-+- ...-+
T Consensus 73 hs~f~i~~~~~~~~~~~~~~~~~~~~~l~~~~~lIiDEism~~------------~~~l~~i~~~lr~i~~~~~~~~pFG 140 (364)
T PF05970_consen 73 HSFFGIPINNNEKSQCKISKNSRLRERLRKADVLIIDEISMVS------------ADMLDAIDRRLRDIRKSKDSDKPFG 140 (364)
T ss_pred HHhcCccccccccccccccccchhhhhhhhheeeecccccchh------------HHHHHHHHHhhhhhhcccchhhhcC
Confidence 2222110 01112589999998882 33444555555554443 33445
Q ss_pred cEEEEEEcC
Q 043051 446 QVLVIGATN 454 (845)
Q Consensus 446 ~ViVIaaTN 454 (845)
.+.||....
T Consensus 141 G~~vil~GD 149 (364)
T PF05970_consen 141 GKQVILFGD 149 (364)
T ss_pred cceEEeehh
Confidence 577776553
No 360
>PRK14531 adenylate kinase; Provisional
Probab=96.83 E-value=0.0012 Score=67.37 Aligned_cols=31 Identities=29% Similarity=0.610 Sum_probs=27.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAGVPFFAA 370 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg~pfi~v 370 (845)
+-++++||||+|||++++.+|...|++++.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 4589999999999999999999999887653
No 361
>PRK06696 uridine kinase; Validated
Probab=96.81 E-value=0.0021 Score=67.58 Aligned_cols=39 Identities=36% Similarity=0.497 Sum_probs=34.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHH
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFV 376 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~ 376 (845)
.|.-|.|.|+||+||||+|+.|+..+ |.+++.++..+|.
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 36678999999999999999999988 7788888877775
No 362
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.80 E-value=0.0011 Score=67.44 Aligned_cols=34 Identities=38% Similarity=0.742 Sum_probs=28.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH
Q 043051 342 VLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE 377 (845)
Q Consensus 342 VLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~ 377 (845)
|+|+||||+|||++|+.||...|++++. ..+++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~--~~~l~~ 35 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS--TGDLLR 35 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE--CcHHHH
Confidence 7999999999999999999999877654 445543
No 363
>PRK10867 signal recognition particle protein; Provisional
Probab=96.80 E-value=0.021 Score=66.06 Aligned_cols=75 Identities=16% Similarity=0.236 Sum_probs=47.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc----CCCeEEeechhHHHh----h------hh---------hhh-hhHHHHH
Q 043051 336 IYCPKGVLLHGPPGTGKTLLAKAIAGEA----GVPFFAANGTDFVEM----F------VG---------VAA-SRVKDLF 391 (845)
Q Consensus 336 ~~~PrgVLL~GPPGTGKT~LArALA~el----g~pfi~vs~sdf~~~----~------vG---------~~~-~~vr~lF 391 (845)
...|.-++++||+|+|||+++..+|..+ |..+..+++..+... + .| ..+ .-.++.+
T Consensus 97 ~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 97 AKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH
Confidence 3457889999999999999887777643 667777777543321 0 01 011 1223445
Q ss_pred HHHHhcCCcEEEEcccchh
Q 043051 392 ASARSFAPSIIFIDEIDAI 410 (845)
Q Consensus 392 ~~A~~~aP~ILfIDEIDaL 410 (845)
+.++.....+|+||=...+
T Consensus 177 ~~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 177 EEAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHHhcCCCEEEEeCCCCc
Confidence 5555555678999965443
No 364
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.78 E-value=0.0038 Score=66.71 Aligned_cols=36 Identities=25% Similarity=0.448 Sum_probs=29.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHH
Q 043051 342 VLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVE 377 (845)
Q Consensus 342 VLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~ 377 (845)
|+|+|+||+|||++|+.++..+ +.+++.++...+.+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~ 40 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRE 40 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHH
Confidence 7899999999999999999877 56777777654533
No 365
>PRK14700 recombination factor protein RarA; Provisional
Probab=96.76 E-value=0.0079 Score=65.87 Aligned_cols=114 Identities=20% Similarity=0.236 Sum_probs=77.9
Q ss_pred CCcEEEEEEc--CCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhc-cc--chhhhhhHHHHHHHHccCCcH
Q 043051 444 TSQVLVIGAT--NRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKY-FR--SEEEKDVLLQEIAELTEDFTG 518 (845)
Q Consensus 444 ~~~ViVIaaT--N~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~-l~--~~~~~d~dl~~LA~~t~GfSg 518 (845)
.+.|++|+|| |+-..+.+||++++ +++.+..++.++...+++..+.... +. .-..++..++.|+..+.|
T Consensus 6 ~G~i~LIGATTENP~f~vn~ALlSR~---~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~G--- 79 (300)
T PRK14700 6 SGKIILIGATTENPTYYLNDALVSRL---FILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEG--- 79 (300)
T ss_pred CCcEEEEeecCCCccceecHhhhhhh---heeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCC---
Confidence 4669999988 67778999999966 5899999999999999999886421 11 011256778889988777
Q ss_pred HHHHHHHHHHHH---HHHHcCCCccCHHHHHHHHHhcccccccCCCCCC
Q 043051 519 AELQNILNEAGI---LTARKDLDYIGQEELLEALKRQKGTFETGQEDST 564 (845)
Q Consensus 519 aDL~~LvneAal---~A~r~~~~~It~edl~~Al~r~k~~~~~g~e~~~ 564 (845)
|.+..+|..-+ .+...+...||.+++++.+.+....+....+.++
T Consensus 80 -DaR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HY 127 (300)
T PRK14700 80 -DCRKILNLLERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFY 127 (300)
T ss_pred -HHHHHHHHHHHHHhhccccCCCccCHHHHHHHHhHHHhcccCCcchhH
Confidence 66655553322 1211222249999999999877444444434344
No 366
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.76 E-value=0.0083 Score=60.84 Aligned_cols=72 Identities=13% Similarity=0.238 Sum_probs=46.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHh-hhhh----------------hhhhHHHHHHHHHhcCCcEEE
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM-FVGV----------------AASRVKDLFASARSFAPSIIF 403 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~-~vG~----------------~~~~vr~lF~~A~~~aP~ILf 403 (845)
-+|+.||||+|||++|..++...+.+++++........ +... ....+..++... ...+.+|+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~Vl 81 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRCVL 81 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCEEE
Confidence 48999999999999999999998888777765432110 0000 011233333321 12356899
Q ss_pred EcccchhccC
Q 043051 404 IDEIDAIGSK 413 (845)
Q Consensus 404 IDEIDaL~~~ 413 (845)
||-+..+..+
T Consensus 82 ID~Lt~~~~n 91 (170)
T PRK05800 82 VDCLTTWVTN 91 (170)
T ss_pred ehhHHHHHHH
Confidence 9999998654
No 367
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.76 E-value=0.0012 Score=64.53 Aligned_cols=32 Identities=38% Similarity=0.812 Sum_probs=26.8
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeEEeechhH
Q 043051 342 VLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDF 375 (845)
Q Consensus 342 VLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf 375 (845)
++|+|+||+|||++|+.++...+.+++ ++..+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~ 33 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI--DGDDL 33 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE--eCccc
Confidence 689999999999999999999887665 44444
No 368
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.74 E-value=0.02 Score=65.80 Aligned_cols=116 Identities=19% Similarity=0.237 Sum_probs=62.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc----CCCeEEeechhHHH-------hh---hhh---hhhhHHHHHHHHHhcCCc
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA----GVPFFAANGTDFVE-------MF---VGV---AASRVKDLFASARSFAPS 400 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el----g~pfi~vs~sdf~~-------~~---vG~---~~~~vr~lF~~A~~~aP~ 400 (845)
.+.-++|.||+|+|||+++..+|... |..+..+++..+.. .| .|. ....+..+.+.+......
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D 301 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE 301 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence 35568999999999999999998754 44555555543321 11 111 112234444444444557
Q ss_pred EEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhh
Q 043051 401 IIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALL 464 (845)
Q Consensus 401 ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALl 464 (845)
+|+||=.... ..+...-..|..++..... ......++|+.+|...+.+...+.
T Consensus 302 ~VLIDTaGr~----------~rd~~~l~eL~~~~~~~~~-~~~~e~~LVLsAt~~~~~~~~~~~ 354 (432)
T PRK12724 302 LILIDTAGYS----------HRNLEQLERMQSFYSCFGE-KDSVENLLVLSSTSSYHHTLTVLK 354 (432)
T ss_pred EEEEeCCCCC----------ccCHHHHHHHHHHHHhhcC-CCCCeEEEEEeCCCCHHHHHHHHH
Confidence 8999853221 1122333344444433211 112234777777777766544443
No 369
>PRK13695 putative NTPase; Provisional
Probab=96.74 E-value=0.011 Score=59.46 Aligned_cols=23 Identities=43% Similarity=0.619 Sum_probs=20.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~el 363 (845)
-++|+|+||+|||+|++.+++++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999987765
No 370
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.73 E-value=0.0029 Score=70.79 Aligned_cols=70 Identities=23% Similarity=0.414 Sum_probs=47.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC--CeEEee-chhHH--------Hhh-----hhhhhhhHHHHHHHHHhcCCcEE
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGV--PFFAAN-GTDFV--------EMF-----VGVAASRVKDLFASARSFAPSII 402 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~--pfi~vs-~sdf~--------~~~-----vG~~~~~vr~lF~~A~~~aP~IL 402 (845)
.++++++||+|+|||++++++.....- .++.+- ..++. ... .|...-...+++..+....|..|
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~I 239 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRI 239 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeE
Confidence 468999999999999999999887642 222221 01110 000 11222346788999999999999
Q ss_pred EEcccc
Q 043051 403 FIDEID 408 (845)
Q Consensus 403 fIDEID 408 (845)
++.|+-
T Consensus 240 ivGEiR 245 (332)
T PRK13900 240 IVGELR 245 (332)
T ss_pred EEEecC
Confidence 999974
No 371
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.72 E-value=0.0038 Score=69.19 Aligned_cols=36 Identities=33% Similarity=0.543 Sum_probs=31.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 043051 336 IYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAAN 371 (845)
Q Consensus 336 ~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs 371 (845)
..++..++|+|+||||||++++.+|..+|.||+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 445678999999999999999999999999999433
No 372
>PRK14530 adenylate kinase; Provisional
Probab=96.71 E-value=0.0014 Score=68.37 Aligned_cols=30 Identities=37% Similarity=0.589 Sum_probs=27.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAA 370 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~v 370 (845)
.++|.||||+|||++|+.||+.+|++++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 589999999999999999999999877644
No 373
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.70 E-value=0.0012 Score=65.53 Aligned_cols=32 Identities=38% Similarity=0.696 Sum_probs=26.6
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeEEeechhH
Q 043051 342 VLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDF 375 (845)
Q Consensus 342 VLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf 375 (845)
++|.||||||||++|+.+++.++.+++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 478999999999999999999987665 44443
No 374
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.69 E-value=0.0047 Score=61.07 Aligned_cols=103 Identities=26% Similarity=0.325 Sum_probs=59.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCC--eEEeechhHHH-------hh------hhhhhhhHHHHHHHHHhcCCcEE
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEAGVP--FFAANGTDFVE-------MF------VGVAASRVKDLFASARSFAPSII 402 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~elg~p--fi~vs~sdf~~-------~~------vG~~~~~vr~lF~~A~~~aP~IL 402 (845)
+..-+.|.||+|+|||+|++++++..... -+.+++.+... .. ...+ .+-+-.+..+....|.++
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G-~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGG-QRQRVALARALLLNPDLL 102 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHH-HHHHHHHHHHHhcCCCEE
Confidence 34578999999999999999999876321 12333321110 00 1112 222333555555578999
Q ss_pred EEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCC
Q 043051 403 FIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLD 457 (845)
Q Consensus 403 fIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd 457 (845)
++||...= -+......+.+++.++.. .+ ..+|.+|+..+
T Consensus 103 ilDEp~~~-----------lD~~~~~~l~~~l~~~~~----~~-~tii~~sh~~~ 141 (157)
T cd00267 103 LLDEPTSG-----------LDPASRERLLELLRELAE----EG-RTVIIVTHDPE 141 (157)
T ss_pred EEeCCCcC-----------CCHHHHHHHHHHHHHHHH----CC-CEEEEEeCCHH
Confidence 99997652 234455667777776522 12 34555666544
No 375
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.68 E-value=0.012 Score=61.11 Aligned_cols=132 Identities=22% Similarity=0.302 Sum_probs=70.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHH-------Hhh---hhh----------hhhhHHHHHHHHH
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFV-------EMF---VGV----------AASRVKDLFASAR 395 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~-------~~~---vG~----------~~~~vr~lF~~A~ 395 (845)
|+-++|+||+|+|||+.+-.+|..+ +..+-.+++..+. ..| .|. ....+++.++.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 6789999999999999999887755 4444444443221 111 111 1122344555554
Q ss_pred hcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhh--ccCcccEEE
Q 043051 396 SFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALL--RKGRFDKIV 473 (845)
Q Consensus 396 ~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALl--RpgRFdr~I 473 (845)
...-.+|+||-.... ..+.+....+.+++..+. .....+|+.+|...+.++.... +...++. +
T Consensus 81 ~~~~D~vlIDT~Gr~----------~~d~~~~~el~~~~~~~~----~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~-l 145 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRS----------PRDEELLEELKKLLEALN----PDEVHLVLSATMGQEDLEQALAFYEAFGIDG-L 145 (196)
T ss_dssp HTTSSEEEEEE-SSS----------STHHHHHHHHHHHHHHHS----SSEEEEEEEGGGGGHHHHHHHHHHHHSSTCE-E
T ss_pred hcCCCEEEEecCCcc----------hhhHHHHHHHHHHhhhcC----CccceEEEecccChHHHHHHHHHhhcccCce-E
Confidence 444469999974332 223344455666666552 2233566666666665553332 2222343 4
Q ss_pred EeCCCCHhHHHH
Q 043051 474 RVGLPSKDGRFA 485 (845)
Q Consensus 474 ~v~~Pd~eeR~e 485 (845)
-+...|...+.-
T Consensus 146 IlTKlDet~~~G 157 (196)
T PF00448_consen 146 ILTKLDETARLG 157 (196)
T ss_dssp EEESTTSSSTTH
T ss_pred EEEeecCCCCcc
Confidence 466666655543
No 376
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.008 Score=64.12 Aligned_cols=24 Identities=42% Similarity=0.616 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el 363 (845)
--|-|.||+|||||||.+.+|+-.
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 348899999999999999999843
No 377
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.67 E-value=0.057 Score=57.76 Aligned_cols=134 Identities=9% Similarity=0.010 Sum_probs=92.1
Q ss_pred CceEEEEcCCC-ChHHHHHHHHHHhcCC---------CeEEeechhHHHh-hhhhhhhhHHHHHHHHHh----cCCcEEE
Q 043051 339 PKGVLLHGPPG-TGKTLLAKAIAGEAGV---------PFFAANGTDFVEM-FVGVAASRVKDLFASARS----FAPSIIF 403 (845)
Q Consensus 339 PrgVLL~GPPG-TGKT~LArALA~elg~---------pfi~vs~sdf~~~-~vG~~~~~vr~lF~~A~~----~aP~ILf 403 (845)
....||.|..+ +||..++..++..+-. .++.+....-... -...+...+|++.+.+.. ...-|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 45789999998 9999999888776522 2333321100000 001245677777666543 1235999
Q ss_pred EcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHH
Q 043051 404 IDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGR 483 (845)
Q Consensus 404 IDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR 483 (845)
|+++|.+ +.+..+.|+..|+| ++.++++|..|+.+..|.|.+++|| ..+.++.|+...-
T Consensus 95 I~~ae~m------------t~~AANALLKtLEE------PP~~t~fILit~~~~~LLpTIrSRC---q~i~~~~p~~~~~ 153 (263)
T PRK06581 95 IYSAELM------------NLNAANSCLKILED------APKNSYIFLITSRAASIISTIRSRC---FKINVRSSILHAY 153 (263)
T ss_pred EechHHh------------CHHHHHHHHHhhcC------CCCCeEEEEEeCChhhCchhHhhce---EEEeCCCCCHHHH
Confidence 9999999 45667777777777 4556888888888999999999966 5889999988777
Q ss_pred HHHHHHHHhh
Q 043051 484 FAILKVHARN 493 (845)
Q Consensus 484 ~eIL~~~l~~ 493 (845)
.+.....+..
T Consensus 154 ~e~~~~~~~p 163 (263)
T PRK06581 154 NELYSQFIQP 163 (263)
T ss_pred HHHHHHhccc
Confidence 7766655543
No 378
>PRK06547 hypothetical protein; Provisional
Probab=96.67 E-value=0.0017 Score=65.93 Aligned_cols=34 Identities=35% Similarity=0.505 Sum_probs=29.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAAN 371 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs 371 (845)
.+.-|++.|++|||||++|+.+++.++++++..+
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 3677899999999999999999999998877543
No 379
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.67 E-value=0.0017 Score=64.91 Aligned_cols=32 Identities=31% Similarity=0.514 Sum_probs=28.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAGVPFFAAN 371 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg~pfi~vs 371 (845)
+.++|+|+||||||++++.+|..+|.||+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 35899999999999999999999999998543
No 380
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.67 E-value=0.0014 Score=65.53 Aligned_cols=28 Identities=32% Similarity=0.678 Sum_probs=26.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 043051 342 VLLHGPPGTGKTLLAKAIAGEAGVPFFA 369 (845)
Q Consensus 342 VLL~GPPGTGKT~LArALA~elg~pfi~ 369 (845)
+-+.|||||||||+|+-||..+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5689999999999999999999999985
No 381
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.67 E-value=0.0018 Score=65.54 Aligned_cols=34 Identities=24% Similarity=0.635 Sum_probs=30.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeEEeec
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANG 372 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~ 372 (845)
++.|+|.||+|+|||++++.+|+.++.+|+..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4579999999999999999999999999987664
No 382
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.67 E-value=0.023 Score=57.94 Aligned_cols=117 Identities=20% Similarity=0.188 Sum_probs=65.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCC-------------CeEEeechhHHHhhhhh-------------hhhhHHHH
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIAGEAGV-------------PFFAANGTDFVEMFVGV-------------AASRVKDL 390 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA~elg~-------------pfi~vs~sdf~~~~vG~-------------~~~~vr~l 390 (845)
....-+.|.||+|+|||||.+++....|. ++.++.-.++...+ |. +..+-+-.
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~-~L~~~~~~~~~~~LSgGq~qrl~ 97 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDV-GLGYLTLGQKLSTLSGGELQRVK 97 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHc-CCCccccCCCcCcCCHHHHHHHH
Confidence 33456889999999999999999754332 12222111122111 10 11233444
Q ss_pred HHHHHhcC--CcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCc
Q 043051 391 FASARSFA--PSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGR 468 (845)
Q Consensus 391 F~~A~~~a--P~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgR 468 (845)
+..|.... |.++++||.-.- -+......+.+++.++. ..+ ..||.+|+.++ ..+ .
T Consensus 98 laral~~~~~p~llLlDEPt~~-----------LD~~~~~~l~~~l~~~~----~~g-~tvIivSH~~~-----~~~--~ 154 (176)
T cd03238 98 LASELFSEPPGTLFILDEPSTG-----------LHQQDINQLLEVIKGLI----DLG-NTVILIEHNLD-----VLS--S 154 (176)
T ss_pred HHHHHhhCCCCCEEEEeCCccc-----------CCHHHHHHHHHHHHHHH----hCC-CEEEEEeCCHH-----HHH--h
Confidence 55555667 899999996442 24455666677776652 123 44555666554 223 4
Q ss_pred ccEEEEeCC
Q 043051 469 FDKIVRVGL 477 (845)
Q Consensus 469 Fdr~I~v~~ 477 (845)
.|+++.+..
T Consensus 155 ~d~i~~l~~ 163 (176)
T cd03238 155 ADWIIDFGP 163 (176)
T ss_pred CCEEEEECC
Confidence 667777644
No 383
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.66 E-value=0.013 Score=59.35 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=46.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeEEeechhH-----HHh---hh---------hhhhhhHHHHHHHHHhcCCcEEEE
Q 043051 342 VLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDF-----VEM---FV---------GVAASRVKDLFASARSFAPSIIFI 404 (845)
Q Consensus 342 VLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf-----~~~---~v---------G~~~~~vr~lF~~A~~~aP~ILfI 404 (845)
+|++|+||+|||++|..++...+.+.+++....- ... .. ......+...+.... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 6899999999999999999887778877764421 111 00 011223344442222 4679999
Q ss_pred cccchhccCC
Q 043051 405 DEIDAIGSKR 414 (845)
Q Consensus 405 DEIDaL~~~R 414 (845)
|-+..+..+-
T Consensus 80 Dclt~~~~n~ 89 (169)
T cd00544 80 DCLTLWVTNL 89 (169)
T ss_pred EcHhHHHHHh
Confidence 9999886543
No 384
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.66 E-value=0.0024 Score=71.08 Aligned_cols=70 Identities=20% Similarity=0.310 Sum_probs=46.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc-----CCCeEEee-chhHHH------hhhhhhhhhHHHHHHHHHhcCCcEEEEcc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA-----GVPFFAAN-GTDFVE------MFVGVAASRVKDLFASARSFAPSIIFIDE 406 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el-----g~pfi~vs-~sdf~~------~~vG~~~~~vr~lF~~A~~~aP~ILfIDE 406 (845)
.+++|++|++|+|||+++++++... +..++.+- ..++.- .+.....-...+++..+..+.|..|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 3589999999999999999998875 22333332 111110 00111223467888888889999999999
Q ss_pred cc
Q 043051 407 ID 408 (845)
Q Consensus 407 ID 408 (845)
+-
T Consensus 224 iR 225 (323)
T PRK13833 224 VR 225 (323)
T ss_pred cC
Confidence 73
No 385
>PRK05973 replicative DNA helicase; Provisional
Probab=96.63 E-value=0.018 Score=61.56 Aligned_cols=39 Identities=36% Similarity=0.277 Sum_probs=29.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeech
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGT 373 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~s 373 (845)
|..+..-++|.|+||+|||+++-.++.+. |.+.++++..
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 45555678999999999999998886644 7777777653
No 386
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.62 E-value=0.016 Score=57.21 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=22.5
Q ss_pred ceEEEEcCCCChHHH-HHHHHHHhcC----CCeEEeec
Q 043051 340 KGVLLHGPPGTGKTL-LAKAIAGEAG----VPFFAANG 372 (845)
Q Consensus 340 rgVLL~GPPGTGKT~-LArALA~elg----~pfi~vs~ 372 (845)
+.+++.||+|||||+ ++..+..... .+++.+..
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p 62 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVP 62 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeC
Confidence 479999999999999 5555544432 33555544
No 387
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.62 E-value=0.0051 Score=68.70 Aligned_cols=69 Identities=29% Similarity=0.296 Sum_probs=47.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhhhhh------------hhhhHHHHHHHHHhcCCcEEEEccc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGV------------AASRVKDLFASARSFAPSIIFIDEI 407 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~vG~------------~~~~vr~lF~~A~~~aP~ILfIDEI 407 (845)
+.+.|.|+||||||+|++++++..+.+++.-.+.++.....+. ....... ...+...+..+||+|-
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~~~~~~~l~~~d~~~i~~g~~~~-~~~~~~~a~~iif~D~- 240 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEKLGGDEALQYSDYAQIALGQQRY-IDYAVRHAHKIAFIDT- 240 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHhcCCCcccCHHHHHHHHHHHHHH-HHHHHhhcCCeEEEcC-
Confidence 5799999999999999999999999999877777665443210 1111112 2333344667999994
Q ss_pred chh
Q 043051 408 DAI 410 (845)
Q Consensus 408 DaL 410 (845)
+.+
T Consensus 241 ~~~ 243 (325)
T TIGR01526 241 DFI 243 (325)
T ss_pred ChH
Confidence 443
No 388
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.61 E-value=0.01 Score=64.48 Aligned_cols=91 Identities=19% Similarity=0.212 Sum_probs=61.1
Q ss_pred ccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhhhhhhhh
Q 043051 306 DDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAAS 385 (845)
Q Consensus 306 ~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~vG~~~~ 385 (845)
=+++--+++.+.+..+.+.|..|. .++||.|.+||||++++|..|.-++..++.+..+.-.+ ...-..
T Consensus 8 m~lVlf~~ai~hi~ri~RvL~~~~----------Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~ 75 (268)
T PF12780_consen 8 MNLVLFDEAIEHIARISRVLSQPR----------GHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKE 75 (268)
T ss_dssp ------HHHHHHHHHHHHHHCSTT----------EEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHH
T ss_pred cceeeHHHHHHHHHHHHHHHcCCC----------CCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHH
Confidence 367778888899999888887654 46999999999999999999999999999887653111 122345
Q ss_pred hHHHHHHHHH-hcCCcEEEEcccc
Q 043051 386 RVKDLFASAR-SFAPSIIFIDEID 408 (845)
Q Consensus 386 ~vr~lF~~A~-~~aP~ILfIDEID 408 (845)
.++.++..|- +..|.+++|+|-+
T Consensus 76 dLk~~~~~ag~~~~~~vfll~d~q 99 (268)
T PF12780_consen 76 DLKKALQKAGIKGKPTVFLLTDSQ 99 (268)
T ss_dssp HHHHHHHHHHCS-S-EEEEEECCC
T ss_pred HHHHHHHHHhccCCCeEEEecCcc
Confidence 6667766663 4467788877643
No 389
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.61 E-value=0.037 Score=59.26 Aligned_cols=131 Identities=15% Similarity=0.168 Sum_probs=72.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCC--CeEEeechhHHH---hh-----hhh-------------hhhhHHHHHHHH
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEAGV--PFFAANGTDFVE---MF-----VGV-------------AASRVKDLFASA 394 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~elg~--pfi~vs~sdf~~---~~-----vG~-------------~~~~vr~lF~~A 394 (845)
.|-.+++.|++|||||++++.+...... ..+.+-+..... .+ +.. ....+.......
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~ 91 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS 91 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 3557999999999999999999776532 222221111100 00 000 001111222211
Q ss_pred Hh---cCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccE
Q 043051 395 RS---FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDK 471 (845)
Q Consensus 395 ~~---~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr 471 (845)
.. ..+++|++|++.. .....+.+.+++.. ...-++.+|..+.....|++.++. -.+.
T Consensus 92 ~~~k~~~~~LiIlDD~~~-------------~~~k~~~l~~~~~~-----gRH~~is~i~l~Q~~~~lp~~iR~--n~~y 151 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGD-------------KKLKSKILRQFFNN-----GRHYNISIIFLSQSYFHLPPNIRS--NIDY 151 (241)
T ss_pred cccCCCCCeEEEEeCCCC-------------chhhhHHHHHHHhc-----ccccceEEEEEeeecccCCHHHhh--cceE
Confidence 11 2367899999632 11233456666654 234458888888888899999866 5676
Q ss_pred EEEeCCCCHhHHHHHHHH
Q 043051 472 IVRVGLPSKDGRFAILKV 489 (845)
Q Consensus 472 ~I~v~~Pd~eeR~eIL~~ 489 (845)
++-+. -+..+..-|++.
T Consensus 152 ~i~~~-~s~~dl~~i~~~ 168 (241)
T PF04665_consen 152 FIIFN-NSKRDLENIYRN 168 (241)
T ss_pred EEEec-CcHHHHHHHHHh
Confidence 66564 455555544443
No 390
>PRK09354 recA recombinase A; Provisional
Probab=96.61 E-value=0.0075 Score=67.79 Aligned_cols=78 Identities=26% Similarity=0.289 Sum_probs=47.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCeEEeechhHHHh-h---hhh------------hhhhHHHHHHHHH
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGE---AGVPFFAANGTDFVEM-F---VGV------------AASRVKDLFASAR 395 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~e---lg~pfi~vs~sdf~~~-~---vG~------------~~~~vr~lF~~A~ 395 (845)
|.+..+-++|+||||||||+||-.++.+ .|...++++..+-.+. + .|. .+..+..+-...+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 3444456889999999999999987543 3677777765431110 0 011 1111111222234
Q ss_pred hcCCcEEEEcccchhcc
Q 043051 396 SFAPSIIFIDEIDAIGS 412 (845)
Q Consensus 396 ~~aP~ILfIDEIDaL~~ 412 (845)
...+.+|+||-+-++.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 55789999999999975
No 391
>PRK13764 ATPase; Provisional
Probab=96.60 E-value=0.0025 Score=76.25 Aligned_cols=70 Identities=20% Similarity=0.331 Sum_probs=41.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC---CCeEEee-chhH-----HHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccch
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAG---VPFFAAN-GTDF-----VEMFVGVAASRVKDLFASARSFAPSIIFIDEIDA 409 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg---~pfi~vs-~sdf-----~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDa 409 (845)
.+++|++||||+||||++++++..+. ..+..+- ..++ +..+.. ...........+....|.+|++||+-.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEiRd 335 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEMRK 335 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCCCC
Confidence 46899999999999999999998774 2222221 1111 111100 001122333334556899999999743
No 392
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.58 E-value=0.003 Score=70.27 Aligned_cols=70 Identities=23% Similarity=0.377 Sum_probs=46.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc-----CCCeEEee-chhHH---Hh---hhhhhhhhHHHHHHHHHhcCCcEEEEcc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA-----GVPFFAAN-GTDFV---EM---FVGVAASRVKDLFASARSFAPSIIFIDE 406 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el-----g~pfi~vs-~sdf~---~~---~vG~~~~~vr~lF~~A~~~aP~ILfIDE 406 (845)
.++++++||+|+|||+++++++++. ...++.+. ..++. .. +.....-...+++..+..+.|..|++.|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE 227 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE 227 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 3689999999999999999999863 12222221 11111 00 0011123577889999999999999999
Q ss_pred cc
Q 043051 407 ID 408 (845)
Q Consensus 407 ID 408 (845)
+-
T Consensus 228 iR 229 (319)
T PRK13894 228 VR 229 (319)
T ss_pred cC
Confidence 74
No 393
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.57 E-value=0.011 Score=65.73 Aligned_cols=40 Identities=20% Similarity=0.158 Sum_probs=30.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCeEEeechh
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---------GVPFFAANGTD 374 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---------g~pfi~vs~sd 374 (845)
|+....-++|+||||||||+++-.+|-.+ +...++++..+
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 45556678899999999999999997653 33667776543
No 394
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.56 E-value=0.0045 Score=69.22 Aligned_cols=86 Identities=22% Similarity=0.337 Sum_probs=59.1
Q ss_pred CCcc-cccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-CCCeEEeechhHHHhhh
Q 043051 303 VTFD-DFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA-GVPFFAANGTDFVEMFV 380 (845)
Q Consensus 303 ~tF~-dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el-g~pfi~vs~sdf~~~~v 380 (845)
..|+ ++.|+++..++ +|.+++.... .++ .--+-++|.||+|+|||+|++.|.+-+ ..+++.+.++-..+...
T Consensus 57 ~~f~~~~~G~~~~i~~---lV~~fk~AA~--g~~-~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL 130 (358)
T PF08298_consen 57 PFFEDEFYGMEETIER---LVNYFKSAAQ--GLE-ERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPL 130 (358)
T ss_pred CCccccccCcHHHHHH---HHHHHHHHHh--ccC-ccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChh
Confidence 3466 89999976664 5555554331 111 223568899999999999999997765 34888887766666556
Q ss_pred hhhhhhHHHHHHHH
Q 043051 381 GVAASRVKDLFASA 394 (845)
Q Consensus 381 G~~~~~vr~lF~~A 394 (845)
+.-+..+|..|..-
T Consensus 131 ~L~P~~~r~~~~~~ 144 (358)
T PF08298_consen 131 HLFPKELRREFEDE 144 (358)
T ss_pred hhCCHhHHHHHHHH
Confidence 66677777777654
No 395
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.56 E-value=0.011 Score=58.08 Aligned_cols=100 Identities=24% Similarity=0.240 Sum_probs=56.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCC--CeEEeech---hHHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhc
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIAGEAGV--PFFAANGT---DFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIG 411 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA~elg~--pfi~vs~s---df~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~ 411 (845)
.....+.|.||+|+|||+|++++++.... --+.+++. .++..+.+ +. +-+-.+..|....|.++++||-..=
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~-G~-~~rv~laral~~~p~illlDEP~~~- 100 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSG-GE-KMRLALAKLLLENPNLLLLDEPTNH- 100 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCH-HH-HHHHHHHHHHhcCCCEEEEeCCccC-
Confidence 34557899999999999999999987521 00111110 00000111 11 2223345555567899999996542
Q ss_pred cCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCC
Q 043051 412 SKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLD 457 (845)
Q Consensus 412 ~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd 457 (845)
-+......+.+++.++ + ..+|.+|+.++
T Consensus 101 ----------LD~~~~~~l~~~l~~~-------~-~til~~th~~~ 128 (144)
T cd03221 101 ----------LDLESIEALEEALKEY-------P-GTVILVSHDRY 128 (144)
T ss_pred ----------CCHHHHHHHHHHHHHc-------C-CEEEEEECCHH
Confidence 2344556667777664 1 24555666544
No 396
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.55 E-value=0.0058 Score=66.75 Aligned_cols=39 Identities=28% Similarity=0.369 Sum_probs=30.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHh
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM 378 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~ 378 (845)
++-++|.||||||||++|+.++..+. .++.++..++...
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r~~ 40 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLRQS 40 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHHHH
Confidence 45689999999999999999999983 3455566565544
No 397
>PRK14528 adenylate kinase; Provisional
Probab=96.53 E-value=0.0023 Score=65.59 Aligned_cols=30 Identities=30% Similarity=0.661 Sum_probs=27.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAA 370 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~v 370 (845)
.+++.||||+|||++|+.+|...|++.+.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 589999999999999999999999887654
No 398
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.53 E-value=0.0022 Score=64.70 Aligned_cols=34 Identities=24% Similarity=0.466 Sum_probs=27.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHH
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFV 376 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~ 376 (845)
-++|.||||+|||++|+.++..+|.+.+ +..++.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~--~~g~~~ 38 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHL--STGDLL 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE--eHHHHH
Confidence 5889999999999999999999986654 444443
No 399
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.53 E-value=0.02 Score=61.80 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=29.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCeEEeec
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGE---AGVPFFAANG 372 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~e---lg~pfi~vs~ 372 (845)
|......++++||||||||++|-.+|.+ .|-+.++++.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 4555667899999999999999988553 2567666664
No 400
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.52 E-value=0.0033 Score=64.59 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el 363 (845)
.|+-++|+||||+|||+|++.|..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 36779999999999999999998765
No 401
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.52 E-value=0.012 Score=65.03 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=30.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCeEEeechh
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---------GVPFFAANGTD 374 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---------g~pfi~vs~sd 374 (845)
|+....-++|+||||||||+++-.+|-.+ +...++++..+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 45556668899999999999999997663 23677777543
No 402
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.50 E-value=0.0069 Score=61.04 Aligned_cols=40 Identities=25% Similarity=0.330 Sum_probs=31.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcC---CCeEEeechhHHH
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEAG---VPFFAANGTDFVE 377 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~elg---~pfi~vs~sdf~~ 377 (845)
.|.-++|.|+||+|||++|+++++.+. ...+.+++..+..
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~ 48 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELRE 48 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHh
Confidence 467899999999999999999999885 3355666655543
No 403
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.49 E-value=0.011 Score=70.23 Aligned_cols=52 Identities=29% Similarity=0.332 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCC
Q 043051 389 DLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLD 457 (845)
Q Consensus 389 ~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd 457 (845)
-.|....-++|.++||||.-.- -+.+.+..+.+++.+. -..+.||..+.++.
T Consensus 524 lafARilL~kP~~v~LDEATsA-----------LDe~~e~~l~q~l~~~------lp~~tvISV~Hr~t 575 (604)
T COG4178 524 LAFARLLLHKPKWVFLDEATSA-----------LDEETEDRLYQLLKEE------LPDATVISVGHRPT 575 (604)
T ss_pred HHHHHHHHcCCCEEEEecchhc-----------cChHHHHHHHHHHHhh------CCCCEEEEeccchh
Confidence 3455556678999999996442 2556788888888772 12277887777755
No 404
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.49 E-value=0.011 Score=75.34 Aligned_cols=136 Identities=20% Similarity=0.232 Sum_probs=93.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhH------HHhhhhhhhh---hHHHHHHHHHhcCCcEEEEcccchh
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDF------VEMFVGVAAS---RVKDLFASARSFAPSIIFIDEIDAI 410 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf------~~~~vG~~~~---~vr~lF~~A~~~aP~ILfIDEIDaL 410 (845)
-++||-||..+|||.....+|++.|..|+.++-.+- ...|+..... --..++-.|.+ ...-|++||+..-
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR-~GyWIVLDELNLA 967 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALR-RGYWIVLDELNLA 967 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHh-cCcEEEeeccccC
Confidence 359999999999999999999999999999986533 2233322111 12344555544 3457899998764
Q ss_pred ccCCCCCCCCCCchHHHHHHHHHHHhhcC--------CcccCCcEEEEEEcCCCCC------CChhhhccCcccEEEEeC
Q 043051 411 GSKRGGPDIGGGGAEREQGLLQILTEMDG--------FKVSTSQVLVIGATNRLDI------LDPALLRKGRFDKIVRVG 476 (845)
Q Consensus 411 ~~~R~~~~~~~~~~e~~~~L~qLL~emdg--------~~~~~~~ViVIaaTN~pd~------LDpALlRpgRFdr~I~v~ 476 (845)
....-.+|+.||..-.. ...+...+.+.||-|+|.. |..|++- ||- .++|+
T Consensus 968 ------------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RFl-E~hFd 1032 (4600)
T COG5271 968 ------------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RFL-EMHFD 1032 (4600)
T ss_pred ------------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hhH-hhhcc
Confidence 34566788888875221 1223445777777787765 5777766 884 57888
Q ss_pred CCCHhHHHHHHHHHH
Q 043051 477 LPSKDGRFAILKVHA 491 (845)
Q Consensus 477 ~Pd~eeR~eIL~~~l 491 (845)
--..++...||...+
T Consensus 1033 dipedEle~ILh~rc 1047 (4600)
T COG5271 1033 DIPEDELEEILHGRC 1047 (4600)
T ss_pred cCcHHHHHHHHhccC
Confidence 888888888887544
No 405
>PRK14527 adenylate kinase; Provisional
Probab=96.49 E-value=0.0025 Score=65.33 Aligned_cols=33 Identities=36% Similarity=0.557 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAA 370 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~elg~pfi~v 370 (845)
.|+-+++.||||+|||++|+.+|...+.+.+..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 466799999999999999999999998766543
No 406
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.48 E-value=0.0085 Score=60.24 Aligned_cols=105 Identities=25% Similarity=0.309 Sum_probs=60.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCC--CeEEeechhHH--------H----------hh--------hhhhhhhHH
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIAGEAGV--PFFAANGTDFV--------E----------MF--------VGVAASRVK 388 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA~elg~--pfi~vs~sdf~--------~----------~~--------vG~~~~~vr 388 (845)
.+..-+.|.||+|+|||+|.+.+++.... --+.+++.+.. . .+ ...+ .+-+
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G-~~~r 104 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGG-QRQR 104 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHH-HHHH
Confidence 34557899999999999999999987521 01122221110 0 00 0001 1122
Q ss_pred HHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCC
Q 043051 389 DLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDIL 459 (845)
Q Consensus 389 ~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~L 459 (845)
-.+..|....|.+|++||--+- -+......+.+++.++. .+ ..+|.+|+.++.+
T Consensus 105 l~la~al~~~p~llllDEP~~g-----------LD~~~~~~l~~~l~~~~-----~~-~tii~~sh~~~~~ 158 (171)
T cd03228 105 IAIARALLRDPPILILDEATSA-----------LDPETEALILEALRALA-----KG-KTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHhcCCCEEEEECCCcC-----------CCHHHHHHHHHHHHHhc-----CC-CEEEEEecCHHHH
Confidence 2344555567999999995442 23455667777777752 12 4555667765533
No 407
>PRK02496 adk adenylate kinase; Provisional
Probab=96.48 E-value=0.0023 Score=64.98 Aligned_cols=30 Identities=30% Similarity=0.609 Sum_probs=26.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAA 370 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~v 370 (845)
-++|.||||+|||++|+.||..++.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 389999999999999999999999776644
No 408
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.48 E-value=0.017 Score=67.46 Aligned_cols=150 Identities=21% Similarity=0.331 Sum_probs=82.6
Q ss_pred cccccHHHHHHHHHHHHHhhCcHHHhhcC--CCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEe-echhHHHhh----
Q 043051 307 DFAGQEYIKRELQEIVRILKNDEEFQNKG--IYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAA-NGTDFVEMF---- 379 (845)
Q Consensus 307 dVvG~de~k~eL~eiv~~Lk~p~~~~~~g--~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~v-s~sdf~~~~---- 379 (845)
.|.|++.+|+.+.-++-- .-++--.-| ++---+|||+|.|.|-||-|.|.+-+-+....-.. .||.=+...
T Consensus 302 SI~GH~~vKkAillLLlG--GvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLG--GVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred ccccHHHHHHHHHHHHhc--cceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 578999999987655422 111111112 22245899999999999999999977653221111 111100000
Q ss_pred --hhhhhhhHHHHHHHHHh-cCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHh----h--cCCcc-cCCcEEE
Q 043051 380 --VGVAASRVKDLFASARS-FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTE----M--DGFKV-STSQVLV 449 (845)
Q Consensus 380 --vG~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~e----m--dg~~~-~~~~ViV 449 (845)
-..++.++.. -|.- ...+|++|||+|.+. +.-.-++..++++ + .|+.. -+.+.-|
T Consensus 380 tD~eTGERRLEA---GAMVLADRGVVCIDEFDKMs------------DiDRvAIHEVMEQqtVTIaKAGIHasLNARCSV 444 (818)
T KOG0479|consen 380 TDQETGERRLEA---GAMVLADRGVVCIDEFDKMS------------DIDRVAIHEVMEQQTVTIAKAGIHASLNARCSV 444 (818)
T ss_pred eccccchhhhhc---CceEEccCceEEehhccccc------------chhHHHHHHHHhcceEEeEeccchhhhccceee
Confidence 0012233321 1111 124799999999982 1122333444433 0 11111 2345889
Q ss_pred EEEcCCCCC-------------CChhhhccCcccEEEEe
Q 043051 450 IGATNRLDI-------------LDPALLRKGRFDKIVRV 475 (845)
Q Consensus 450 IaaTN~pd~-------------LDpALlRpgRFdr~I~v 475 (845)
|||.|+... |+..|++ |||..+.+
T Consensus 445 lAAANPvyG~Yd~~k~P~eNIgLpDSLLS--RFDLlFv~ 481 (818)
T KOG0479|consen 445 LAAANPVYGQYDQSKTPMENIGLPDSLLS--RFDLLFVV 481 (818)
T ss_pred eeecCccccccCCCCChhhccCCcHHHHh--hhcEEEEE
Confidence 999997543 6889999 99975544
No 409
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.48 E-value=0.0029 Score=71.13 Aligned_cols=71 Identities=23% Similarity=0.415 Sum_probs=47.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCC--CeEEeec-hhHH-------Hh-----hhhhhhhhHHHHHHHHHhcCCcEE
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEAGV--PFFAANG-TDFV-------EM-----FVGVAASRVKDLFASARSFAPSII 402 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~elg~--pfi~vs~-sdf~-------~~-----~vG~~~~~vr~lF~~A~~~aP~IL 402 (845)
..+++|+.||+|+|||++++++++.... .++.+-- .++. .. ..|...-...+++..+....|..|
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~I 240 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRI 240 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeE
Confidence 3468999999999999999999987642 2222211 1110 00 011223356688888988999999
Q ss_pred EEcccc
Q 043051 403 FIDEID 408 (845)
Q Consensus 403 fIDEID 408 (845)
++.|+-
T Consensus 241 ivGEiR 246 (344)
T PRK13851 241 LLGEMR 246 (344)
T ss_pred EEEeeC
Confidence 999974
No 410
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.47 E-value=0.016 Score=59.16 Aligned_cols=19 Identities=26% Similarity=0.567 Sum_probs=18.1
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 043051 342 VLLHGPPGTGKTLLAKAIA 360 (845)
Q Consensus 342 VLL~GPPGTGKT~LArALA 360 (845)
++|+||.|.|||++.|.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999997
No 411
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.46 E-value=0.027 Score=64.20 Aligned_cols=72 Identities=15% Similarity=0.110 Sum_probs=46.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHH----Hh---h---------hhhhhhhHHHHHHHHHh-c
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFV----EM---F---------VGVAASRVKDLFASARS-F 397 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~----~~---~---------vG~~~~~vr~lF~~A~~-~ 397 (845)
.|+-++|.||+|+|||+++..||..+ |..+..+++..+. +. | +......+.+.+..++. .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 36789999999999999999998766 4455555553321 11 1 11234455565655543 2
Q ss_pred CCcEEEEcccch
Q 043051 398 APSIIFIDEIDA 409 (845)
Q Consensus 398 aP~ILfIDEIDa 409 (845)
.-.+||||-...
T Consensus 320 ~~DvVLIDTaGR 331 (436)
T PRK11889 320 RVDYILIDTAGK 331 (436)
T ss_pred CCCEEEEeCccc
Confidence 347999997544
No 412
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.46 E-value=0.0038 Score=69.13 Aligned_cols=72 Identities=25% Similarity=0.451 Sum_probs=47.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCC--CeEEeec-hhHH-------Hhh-----hhhhhhhHHHHHHHHHhcCCcE
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIAGEAGV--PFFAANG-TDFV-------EMF-----VGVAASRVKDLFASARSFAPSI 401 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA~elg~--pfi~vs~-sdf~-------~~~-----vG~~~~~vr~lF~~A~~~aP~I 401 (845)
+...++++.||+|+|||++++++++.... ..+.+.- .++. ... .+...-.+.+++..+....|.+
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ 221 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDR 221 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCe
Confidence 34568999999999999999999987632 2222210 0110 000 0112234677888888889999
Q ss_pred EEEcccc
Q 043051 402 IFIDEID 408 (845)
Q Consensus 402 LfIDEID 408 (845)
|++||+-
T Consensus 222 ii~gE~r 228 (308)
T TIGR02788 222 IILGELR 228 (308)
T ss_pred EEEeccC
Confidence 9999974
No 413
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.45 E-value=0.046 Score=63.31 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=46.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc----CCCeEEeechhHHHh-------h---hh---------hhh-hhHHHHHH
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIAGEA----GVPFFAANGTDFVEM-------F---VG---------VAA-SRVKDLFA 392 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA~el----g~pfi~vs~sdf~~~-------~---vG---------~~~-~~vr~lF~ 392 (845)
..|.-++++||+|+|||++|..+|..+ |..+..+++..+... + .| ..+ .-.++.++
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 357889999999999999988887653 567777777643211 1 00 011 12244555
Q ss_pred HHHhcCCcEEEEcccch
Q 043051 393 SARSFAPSIIFIDEIDA 409 (845)
Q Consensus 393 ~A~~~aP~ILfIDEIDa 409 (845)
.++.....+|+||=...
T Consensus 177 ~~~~~~~DvVIIDTaGr 193 (428)
T TIGR00959 177 YAKENGFDVVIVDTAGR 193 (428)
T ss_pred HHHhcCCCEEEEeCCCc
Confidence 55555567899986544
No 414
>PRK04328 hypothetical protein; Provisional
Probab=96.44 E-value=0.029 Score=60.26 Aligned_cols=38 Identities=34% Similarity=0.430 Sum_probs=29.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCeEEeec
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGE---AGVPFFAANG 372 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~e---lg~pfi~vs~ 372 (845)
|.+....+|++||||||||+|+..++.+ .|.+.++++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 4555677999999999999999876543 3667777765
No 415
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.44 E-value=0.0085 Score=65.58 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=29.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc----C-CCeEEeechhH
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA----G-VPFFAANGTDF 375 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el----g-~pfi~vs~sdf 375 (845)
.++.++|+||+|+|||+++..+|..+ | ..+..+++..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 46679999999999999999998765 3 56666666543
No 416
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.43 E-value=0.0026 Score=66.22 Aligned_cols=33 Identities=42% Similarity=0.761 Sum_probs=27.8
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHH
Q 043051 342 VLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFV 376 (845)
Q Consensus 342 VLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~ 376 (845)
|+|.||||+|||++|+.||...|++.+. ..+++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is--~gdll 34 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS--TGDLL 34 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee--hhHHH
Confidence 7899999999999999999999877765 44443
No 417
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.41 E-value=0.026 Score=58.28 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=19.5
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 043051 340 KGVLLHGPPGTGKTLLAKAIA 360 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA 360 (845)
+-++|+||.|+|||+|.|.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999998
No 418
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.38 E-value=0.014 Score=58.26 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=19.7
Q ss_pred CceEEEEcCCCChHHHHHHHHH
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIA 360 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA 360 (845)
++..+|+||.|+|||++.++++
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~ 42 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIG 42 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999984
No 419
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.37 E-value=0.03 Score=56.64 Aligned_cols=105 Identities=19% Similarity=0.228 Sum_probs=60.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCC--CeEEeechhHHH------h---hhh-----------------h-hhhh
Q 043051 336 IYCPKGVLLHGPPGTGKTLLAKAIAGEAGV--PFFAANGTDFVE------M---FVG-----------------V-AASR 386 (845)
Q Consensus 336 ~~~PrgVLL~GPPGTGKT~LArALA~elg~--pfi~vs~sdf~~------~---~vG-----------------~-~~~~ 386 (845)
+.....+.|.||+|+|||+|++.+++.... --+.+++.+... . |+. . +..+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~ 104 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGER 104 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHH
Confidence 334567899999999999999999987521 112223221100 0 000 0 0122
Q ss_pred HHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCC
Q 043051 387 VKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLD 457 (845)
Q Consensus 387 vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd 457 (845)
-+-.+..|....|.++++||.-+- -+......+.++|.++. .+ ..+|.+|+.++
T Consensus 105 qrv~laral~~~p~~lllDEP~~~-----------LD~~~~~~l~~~l~~~~-----~~-~tii~~sh~~~ 158 (178)
T cd03247 105 QRLALARILLQDAPIVLLDEPTVG-----------LDPITERQLLSLIFEVL-----KD-KTLIWITHHLT 158 (178)
T ss_pred HHHHHHHHHhcCCCEEEEECCccc-----------CCHHHHHHHHHHHHHHc-----CC-CEEEEEecCHH
Confidence 333455555667999999996542 24455667778877752 13 34555566544
No 420
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.36 E-value=0.015 Score=71.36 Aligned_cols=78 Identities=23% Similarity=0.226 Sum_probs=47.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHH---hcCCCeEEeechhHHH----hhhhh------------hhhhHHHHHHHHH
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAG---EAGVPFFAANGTDFVE----MFVGV------------AASRVKDLFASAR 395 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~---elg~pfi~vs~sdf~~----~~vG~------------~~~~vr~lF~~A~ 395 (845)
|......++|+||||||||+|+-.++. ..|.+.++++..+-.. .-.|. .+..+..+-...+
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 455566788999999999999976543 3466677666543111 00111 1111111112233
Q ss_pred hcCCcEEEEcccchhcc
Q 043051 396 SFAPSIIFIDEIDAIGS 412 (845)
Q Consensus 396 ~~aP~ILfIDEIDaL~~ 412 (845)
...+.+|+||-|.++..
T Consensus 136 ~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 136 SGALDIVVIDSVAALVP 152 (790)
T ss_pred cCCCeEEEEcchhhhcc
Confidence 45688999999999975
No 421
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.36 E-value=0.016 Score=59.18 Aligned_cols=87 Identities=20% Similarity=0.126 Sum_probs=50.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC--CeEEeechhH--H--HhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhcc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGV--PFFAANGTDF--V--EMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGS 412 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~--pfi~vs~sdf--~--~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~ 412 (845)
..-+.|.||.|+|||||.+.+++.... --+.+++..+ . ......+. +-|-.+..|....|.++++||--.-
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq-~qrv~laral~~~p~lllLDEPts~-- 101 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGE-LQRVAIAAALLRNATFYLFDEPSAY-- 101 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHH-HHHHHHHHHHhcCCCEEEEECCccc--
Confidence 346889999999999999999986521 1122222110 0 00011111 2333455555567999999996442
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHhh
Q 043051 413 KRGGPDIGGGGAEREQGLLQILTEM 437 (845)
Q Consensus 413 ~R~~~~~~~~~~e~~~~L~qLL~em 437 (845)
-+......+.+++.++
T Consensus 102 ---------LD~~~~~~l~~~l~~~ 117 (177)
T cd03222 102 ---------LDIEQRLNAARAIRRL 117 (177)
T ss_pred ---------CCHHHHHHHHHHHHHH
Confidence 2344555666666664
No 422
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.36 E-value=0.014 Score=60.47 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAG 361 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~ 361 (845)
.-++|+||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 4589999999999999999983
No 423
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.36 E-value=0.0032 Score=65.79 Aligned_cols=29 Identities=45% Similarity=0.796 Sum_probs=26.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 043051 342 VLLHGPPGTGKTLLAKAIAGEAGVPFFAA 370 (845)
Q Consensus 342 VLL~GPPGTGKT~LArALA~elg~pfi~v 370 (845)
|+++||||+|||++|+.||..+|++.+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 89999999999999999999999777653
No 424
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.36 E-value=0.025 Score=66.60 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=30.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh----cCCCeEEeech
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGE----AGVPFFAANGT 373 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~e----lg~pfi~vs~s 373 (845)
|......+|++||||||||+||..++.+ .|-+.++++..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 5666788999999999999999988432 36787777754
No 425
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.35 E-value=0.0053 Score=69.73 Aligned_cols=69 Identities=25% Similarity=0.328 Sum_probs=45.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC-----CCeEEeech-hHH-----------HhhhhhhhhhHHHHHHHHHhcCCcEEE
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAG-----VPFFAANGT-DFV-----------EMFVGVAASRVKDLFASARSFAPSIIF 403 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg-----~pfi~vs~s-df~-----------~~~vG~~~~~vr~lF~~A~~~aP~ILf 403 (845)
.+|++||+|+|||++++++.++.. ...+.+--. ++. ..-+|.........+..+....|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 589999999999999999988762 234433211 211 111222223456677778788999999
Q ss_pred Ecccch
Q 043051 404 IDEIDA 409 (845)
Q Consensus 404 IDEIDa 409 (845)
+.|+-.
T Consensus 231 vGEiRd 236 (372)
T TIGR02525 231 VGEIRD 236 (372)
T ss_pred eCCCCC
Confidence 999743
No 426
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.35 E-value=0.013 Score=65.19 Aligned_cols=115 Identities=22% Similarity=0.185 Sum_probs=61.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCeEEeechh-HH-H----h--hhhhhh-------------
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---------GVPFFAANGTD-FV-E----M--FVGVAA------------- 384 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---------g~pfi~vs~sd-f~-~----~--~vG~~~------------- 384 (845)
|+....-+.|+||||||||.|+..+|-.. +...++++..+ |. + . -.|...
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~ 171 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAY 171 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCC
Confidence 44555668899999999999998876322 34666776433 11 1 0 001100
Q ss_pred ------hhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEE
Q 043051 385 ------SRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGA 452 (845)
Q Consensus 385 ------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaa 452 (845)
..+..+........+.+|+||-|-++.+..- .+ .+.-.++++.+.+++..+..+....+ +.||.+
T Consensus 172 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~-~~-~g~~~~r~~~l~~~~~~L~~la~~~~-vavvit 242 (313)
T TIGR02238 172 TSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDF-SG-RGELSERQQKLAQMLSRLNKISEEFN-VAVFVT 242 (313)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhc-cC-ccchHHHHHHHHHHHHHHHHHHHHcC-cEEEEE
Confidence 1111222222334678999999999865311 11 12233444556666655544433334 555544
No 427
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.35 E-value=0.0089 Score=64.84 Aligned_cols=95 Identities=16% Similarity=0.213 Sum_probs=56.9
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC---CCeEEeec-hhHHH
Q 043051 302 GVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAG---VPFFAANG-TDFVE 377 (845)
Q Consensus 302 ~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg---~pfi~vs~-sdf~~ 377 (845)
..+++++.-.++..+.|.+++. .+ -..++++||+|+|||++++++..... ..++.+.- .++.-
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~---~~----------~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~ 122 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLE---KP----------HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI 122 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHh---cC----------CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC
Confidence 3467777655555555444332 11 12489999999999999999977663 23444321 11110
Q ss_pred -----hhhh-hhhhhHHHHHHHHHhcCCcEEEEcccch
Q 043051 378 -----MFVG-VAASRVKDLFASARSFAPSIIFIDEIDA 409 (845)
Q Consensus 378 -----~~vG-~~~~~vr~lF~~A~~~aP~ILfIDEIDa 409 (845)
..+. .......+++..+....|.+|+|+|+..
T Consensus 123 ~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 123 PGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 0011 1112456777778888999999999854
No 428
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.34 E-value=0.0034 Score=64.18 Aligned_cols=32 Identities=41% Similarity=0.696 Sum_probs=25.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEeechh
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTD 374 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~vs~sd 374 (845)
-++|.||||+||||+|+.||+.++ +..++..+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~--i~hlstgd 33 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG--LPHLDTGD 33 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CcEEcHhH
Confidence 489999999999999999999954 44455433
No 429
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.34 E-value=0.01 Score=59.80 Aligned_cols=102 Identities=25% Similarity=0.324 Sum_probs=58.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC--CeEEeechhH--------HHh----------h--------hhhhhhhHHHH
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGV--PFFAANGTDF--------VEM----------F--------VGVAASRVKDL 390 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~--pfi~vs~sdf--------~~~----------~--------vG~~~~~vr~l 390 (845)
..-+.|.||+|+|||+|.+.+++.... --+.+++.++ ... + .. +..+-|-.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS-~G~~qrv~ 106 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILS-GGQRQRLG 106 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcC-HHHHHHHH
Confidence 445889999999999999999986521 0112222111 000 0 01 11123344
Q ss_pred HHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCC
Q 043051 391 FASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLD 457 (845)
Q Consensus 391 F~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd 457 (845)
+..|....|.++++||--+- -+......+.++|.++.. .+ ..+|.+|+..+
T Consensus 107 la~al~~~p~~lllDEPt~~-----------LD~~~~~~l~~~l~~~~~----~~-~tii~~sh~~~ 157 (173)
T cd03246 107 LARALYGNPRILVLDEPNSH-----------LDVEGERALNQAIAALKA----AG-ATRIVIAHRPE 157 (173)
T ss_pred HHHHHhcCCCEEEEECCccc-----------cCHHHHHHHHHHHHHHHh----CC-CEEEEEeCCHH
Confidence 55566678999999996542 244556677777776521 23 34555666544
No 430
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.34 E-value=0.0028 Score=59.42 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 043051 342 VLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 342 VLL~GPPGTGKT~LArALA~el 363 (845)
|+|.|+||||||++|+.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 431
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.33 E-value=0.022 Score=58.95 Aligned_cols=36 Identities=19% Similarity=0.418 Sum_probs=29.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHh
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM 378 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~ 378 (845)
-+.|+|++|+|||++++.++...|.+++ ++.++...
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~~~~ 38 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPIL--DADIYARE 38 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHHHHH
Confidence 4789999999999999999998898887 55555543
No 432
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.33 E-value=0.0083 Score=68.82 Aligned_cols=39 Identities=21% Similarity=0.245 Sum_probs=32.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE 377 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~ 377 (845)
.+.|.|.|++|||||+|+++||..+|.+.+.--+.++..
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~ 257 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVF 257 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHH
Confidence 567999999999999999999999998876655555543
No 433
>PTZ00035 Rad51 protein; Provisional
Probab=96.32 E-value=0.019 Score=64.54 Aligned_cols=115 Identities=20% Similarity=0.169 Sum_probs=61.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcC---------CCeEEeechh------HHHhh--hhhh--------------
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEAG---------VPFFAANGTD------FVEMF--VGVA-------------- 383 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~elg---------~pfi~vs~sd------f~~~~--vG~~-------------- 383 (845)
|+....-+.|+||||||||+|+..++.... ...++++... +.... .|..
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 455556688999999999999999875432 3455655432 11110 0000
Q ss_pred --h---hhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEE
Q 043051 384 --A---SRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGA 452 (845)
Q Consensus 384 --~---~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaa 452 (845)
. ..+..+........+.+|+||-|-++.+.-- .+ .+...++++.|.+++..+..+....+ +.||.+
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~-~~-~~~~~~r~~~l~~~~~~L~~la~~~~-vavvvt 264 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDY-SG-RGELAERQQHLGKFLRALQKLADEFN-VAVVIT 264 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhc-cC-cccHHHHHHHHHHHHHHHHHHHHHcC-cEEEEe
Confidence 0 0111112222234678999999999865311 00 11233456666666665544332333 555543
No 434
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.30 E-value=0.015 Score=58.50 Aligned_cols=38 Identities=32% Similarity=0.461 Sum_probs=30.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHH
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFV 376 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~ 376 (845)
+.-+.|.|+||+|||++|+++++.+ |..+..+++..+.
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~ 44 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR 44 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence 4578999999999999999999887 4456667765543
No 435
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.28 E-value=0.003 Score=63.84 Aligned_cols=30 Identities=33% Similarity=0.550 Sum_probs=26.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAAN 371 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~vs 371 (845)
-++++|.||||||++++.|+ ++|.+.+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 37899999999999999999 9998888665
No 436
>PHA02774 E1; Provisional
Probab=96.28 E-value=0.0061 Score=72.02 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=27.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeEE-ee
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAGVPFFA-AN 371 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg~pfi~-vs 371 (845)
.+++|+||||||||++|.+|++.++...+. +|
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN 467 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVN 467 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEE
Confidence 489999999999999999999998655543 44
No 437
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.28 E-value=0.011 Score=61.19 Aligned_cols=42 Identities=26% Similarity=0.514 Sum_probs=32.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc-CCCeEEeechhHHHh
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIAGEA-GVPFFAANGTDFVEM 378 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA~el-g~pfi~vs~sdf~~~ 378 (845)
..|.-+++.|+||+|||+++..+..+. +..++.++..+|...
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 458899999999999999999999888 788888988877643
No 438
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.27 E-value=0.016 Score=65.12 Aligned_cols=115 Identities=22% Similarity=0.156 Sum_probs=60.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCeEEeechh------HHHhh--hhhhh-------------
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---------GVPFFAANGTD------FVEMF--VGVAA------------- 384 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---------g~pfi~vs~sd------f~~~~--vG~~~------------- 384 (845)
|+....-..|+||||||||.|+..+|-.. +...++++... +.+.. .|...
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~ 201 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAY 201 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCC
Confidence 44445567799999999999999886432 24566666532 11110 11110
Q ss_pred --h----hHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEE
Q 043051 385 --S----RVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGA 452 (845)
Q Consensus 385 --~----~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaa 452 (845)
. .+..+-.......+.+|+||-|-++.+..- .+ .+.-.++++.|.+++..+..+....+ +.||.+
T Consensus 202 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~-~~-rg~l~~rq~~L~~~~~~L~~lA~~~~-vavvvT 272 (344)
T PLN03187 202 TYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDF-TG-RGELAERQQKLAQMLSRLTKIAEEFN-VAVYMT 272 (344)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccc-cC-ccchHHHHHHHHHHHHHHHHHHHHcC-CEEEEE
Confidence 1 111121222334678999999999865311 01 11223455656666655544333333 445444
No 439
>PRK04182 cytidylate kinase; Provisional
Probab=96.27 E-value=0.0038 Score=62.40 Aligned_cols=29 Identities=34% Similarity=0.688 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFA 369 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~ 369 (845)
-|+|.|+||||||++|+.+|..+|.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 37899999999999999999999998874
No 440
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.26 E-value=0.0093 Score=67.17 Aligned_cols=23 Identities=48% Similarity=0.657 Sum_probs=21.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~el 363 (845)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 441
>PRK01184 hypothetical protein; Provisional
Probab=96.25 E-value=0.0038 Score=63.32 Aligned_cols=33 Identities=36% Similarity=0.587 Sum_probs=27.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHH
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFV 376 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~ 376 (845)
-++|+||||+||||+++ ++.+.|++++.. ++++
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~--~d~l 35 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM--GDVI 35 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh--hHHH
Confidence 58899999999999998 788999888654 3544
No 442
>PLN02674 adenylate kinase
Probab=96.23 E-value=0.0052 Score=65.91 Aligned_cols=39 Identities=28% Similarity=0.410 Sum_probs=31.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE 377 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~ 377 (845)
+++..++|.||||+||||+|+.||...|++.+ +..+++.
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~hi--s~GdllR 67 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHL--ATGDMLR 67 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEE--chhHHHH
Confidence 33567999999999999999999999986655 5555543
No 443
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.21 E-value=0.013 Score=72.15 Aligned_cols=98 Identities=29% Similarity=0.447 Sum_probs=56.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---C--CCeEEeechhH----HHhhhhhhhhhHHHHHHHHH----------hcCCcE
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEA---G--VPFFAANGTDF----VEMFVGVAASRVKDLFASAR----------SFAPSI 401 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~el---g--~pfi~vs~sdf----~~~~vG~~~~~vr~lF~~A~----------~~aP~I 401 (845)
-++|.|+||||||++++++...+ + .+++.+..+.- +....|..+..+..++.... .....+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 58999999999999999985543 4 45554433221 12223333445555554311 123479
Q ss_pred EEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCC
Q 043051 402 IFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLD 457 (845)
Q Consensus 402 LfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd 457 (845)
|+|||+..+. ...+..++..+. ...++++++=.+...
T Consensus 420 lIvDEaSMvd---------------~~~~~~Ll~~~~----~~~rlilvGD~~QLp 456 (720)
T TIGR01448 420 LIVDESSMMD---------------TWLALSLLAALP----DHARLLLVGDTDQLP 456 (720)
T ss_pred EEEeccccCC---------------HHHHHHHHHhCC----CCCEEEEECcccccc
Confidence 9999998882 123455555432 234577776555433
No 444
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.21 E-value=0.026 Score=56.58 Aligned_cols=33 Identities=30% Similarity=0.340 Sum_probs=27.4
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCeEEeechh
Q 043051 342 VLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTD 374 (845)
Q Consensus 342 VLL~GPPGTGKT~LArALA~el---g~pfi~vs~sd 374 (845)
++++||||+|||++++.+|..+ +..+..+++..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 6899999999999999998765 66777777653
No 445
>PF13245 AAA_19: Part of AAA domain
Probab=96.21 E-value=0.0064 Score=53.53 Aligned_cols=33 Identities=42% Similarity=0.556 Sum_probs=22.0
Q ss_pred eEEEEcCCCChHH-HHHHHHHHhc------CCCeEEeech
Q 043051 341 GVLLHGPPGTGKT-LLAKAIAGEA------GVPFFAANGT 373 (845)
Q Consensus 341 gVLL~GPPGTGKT-~LArALA~el------g~pfi~vs~s 373 (845)
-+++.|||||||| ++++.++... +..+..++.+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 3566999999999 5555555544 4456665543
No 446
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.20 E-value=0.046 Score=60.94 Aligned_cols=37 Identities=30% Similarity=0.340 Sum_probs=29.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeech
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGT 373 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~s 373 (845)
..|.-++|+||+|+||||++..+|..+ +..+..+++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 356789999999999999999998866 4455555543
No 447
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.19 E-value=0.036 Score=58.86 Aligned_cols=21 Identities=38% Similarity=0.417 Sum_probs=18.7
Q ss_pred EEEEcCCCChHHHHHHHHHHh
Q 043051 342 VLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 342 VLL~GPPGTGKT~LArALA~e 362 (845)
.+|+||||+|||+|+-.+|-.
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999999753
No 448
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.18 E-value=0.055 Score=54.42 Aligned_cols=114 Identities=16% Similarity=0.167 Sum_probs=62.6
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCeEE---eech----hH--HHhh------------------hhhhhhhHHHHH
Q 043051 342 VLLHGPPGTGKTLLAKAIAGEA---GVPFFA---ANGT----DF--VEMF------------------VGVAASRVKDLF 391 (845)
Q Consensus 342 VLL~GPPGTGKT~LArALA~el---g~pfi~---vs~s----df--~~~~------------------vG~~~~~vr~lF 391 (845)
+.+|+++|+|||++|-++|-.+ |..+.. +.+. +. ...+ .-......+..+
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~~ 84 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEGW 84 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHHH
Confidence 6789999999999999996654 544444 2221 10 0000 001112233444
Q ss_pred HHHHh----cCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccC
Q 043051 392 ASARS----FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKG 467 (845)
Q Consensus 392 ~~A~~----~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpg 467 (845)
+.|+. ....+|+||||-...... -.....+.++|.. .+.+.=||.|...+ ++.|+.
T Consensus 85 ~~a~~~~~~~~~dLlVLDEi~~a~~~g---------li~~~~v~~ll~~------rp~~~evIlTGr~~---p~~l~e-- 144 (159)
T cd00561 85 AFAKEAIASGEYDLVILDEINYALGYG---------LLDVEEVVDLLKA------KPEDLELVLTGRNA---PKELIE-- 144 (159)
T ss_pred HHHHHHHhcCCCCEEEEechHhHhhCC---------CCCHHHHHHHHHc------CCCCCEEEEECCCC---CHHHHH--
Confidence 44432 346799999998764321 1123456666665 23335566666543 366666
Q ss_pred cccEEEEe
Q 043051 468 RFDKIVRV 475 (845)
Q Consensus 468 RFdr~I~v 475 (845)
+-|.+-++
T Consensus 145 ~AD~VTEm 152 (159)
T cd00561 145 AADLVTEM 152 (159)
T ss_pred hCceeeec
Confidence 66655544
No 449
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.17 E-value=0.023 Score=59.08 Aligned_cols=22 Identities=50% Similarity=0.816 Sum_probs=21.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 043051 342 VLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 342 VLL~GPPGTGKT~LArALA~el 363 (845)
++|+|+||+|||++|+-+|+++
T Consensus 4 iIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHH
Confidence 7899999999999999999988
No 450
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.16 E-value=0.054 Score=55.57 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHh
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~e 362 (845)
+..-+.|.||+|+|||+|++.+++.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3456889999999999999999974
No 451
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.16 E-value=0.0036 Score=61.55 Aligned_cols=34 Identities=32% Similarity=0.494 Sum_probs=27.4
Q ss_pred EEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhh
Q 043051 344 LHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMF 379 (845)
Q Consensus 344 L~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~ 379 (845)
|.||||+|||++|+.||.+.|. ..++..++....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~~ 34 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLREE 34 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHHHH
Confidence 6899999999999999999975 455666665543
No 452
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.16 E-value=0.025 Score=56.72 Aligned_cols=102 Identities=26% Similarity=0.343 Sum_probs=58.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCC-----------CeEEeech-hH-----HHhh----hh--hhhhhHHHHHHH
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIAGEAGV-----------PFFAANGT-DF-----VEMF----VG--VAASRVKDLFAS 393 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA~elg~-----------pfi~vs~s-df-----~~~~----vG--~~~~~vr~lF~~ 393 (845)
.+..-+.|.||+|+|||+|++.+++.... .+.++... .+ .+.. .. .+..+-|-.+..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~lar 104 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFAR 104 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHH
Confidence 34556899999999999999999987521 01111100 00 0100 00 011223344555
Q ss_pred HHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCC
Q 043051 394 ARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLD 457 (845)
Q Consensus 394 A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd 457 (845)
|....|.++++||-.+- -+......+.+++.++ + ..+|.+|+.++
T Consensus 105 al~~~p~~lllDEPt~~-----------LD~~~~~~l~~~l~~~-------~-~tiiivsh~~~ 149 (166)
T cd03223 105 LLLHKPKFVFLDEATSA-----------LDEESEDRLYQLLKEL-------G-ITVISVGHRPS 149 (166)
T ss_pred HHHcCCCEEEEECCccc-----------cCHHHHHHHHHHHHHh-------C-CEEEEEeCChh
Confidence 55668999999996542 2445566777777764 1 34555666543
No 453
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.16 E-value=0.025 Score=56.97 Aligned_cols=103 Identities=21% Similarity=0.269 Sum_probs=57.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC--CeEEeechhH-------H----------Hhhhh---------hhhhhHHHH
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGV--PFFAANGTDF-------V----------EMFVG---------VAASRVKDL 390 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~--pfi~vs~sdf-------~----------~~~vG---------~~~~~vr~l 390 (845)
..-+.|.||+|+|||+|++.+++.... --+.+++.+. . ..+.+ .+..+-|-.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~ 105 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLA 105 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHHH
Confidence 446889999999999999999986410 0011111000 0 00000 011122334
Q ss_pred HHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCC
Q 043051 391 FASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLD 457 (845)
Q Consensus 391 F~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd 457 (845)
+..|....|.++++||-.+- -+......+.++|.++.. .+ ..+|.+|+.++
T Consensus 106 laral~~~p~illlDEPt~~-----------LD~~~~~~l~~~l~~~~~----~g-~tiii~th~~~ 156 (173)
T cd03230 106 LAQALLHDPELLILDEPTSG-----------LDPESRREFWELLRELKK----EG-KTILLSSHILE 156 (173)
T ss_pred HHHHHHcCCCEEEEeCCccC-----------CCHHHHHHHHHHHHHHHH----CC-CEEEEECCCHH
Confidence 55555668999999996553 244556677777777521 23 34555666544
No 454
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.16 E-value=0.0048 Score=61.36 Aligned_cols=34 Identities=32% Similarity=0.648 Sum_probs=24.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHH
Q 043051 342 VLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFV 376 (845)
Q Consensus 342 VLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~ 376 (845)
|.|+|+||||||+|+++|+.. |.+++.=.+..+.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~~ 35 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAREII 35 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHHHH
Confidence 789999999999999999988 8887754444444
No 455
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.15 E-value=0.039 Score=65.28 Aligned_cols=112 Identities=18% Similarity=0.174 Sum_probs=0.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCeEEeech----hHHHhhhhhh-----------------------
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA----GVPFFAANGT----DFVEMFVGVA----------------------- 383 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el----g~pfi~vs~s----df~~~~vG~~----------------------- 383 (845)
|.+....+||+|+||||||+|+..++.+. |.+.++++.. ++.......+
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~ 106 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSE 106 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCccccc
Q ss_pred ---------hhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcC
Q 043051 384 ---------ASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATN 454 (845)
Q Consensus 384 ---------~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN 454 (845)
..-+..+.+......|..|+||-+..+ .............+..++..+ ...++.+|.+++
T Consensus 107 ~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l------~~~~d~~~~~r~~l~~L~~~L-----k~~g~TvLlt~~ 175 (509)
T PRK09302 107 QEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEAL------FSGFSNEAVVRRELRRLFAWL-----KQKGVTAVITGE 175 (509)
T ss_pred ccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHH------HhhccCHHHHHHHHHHHHHHH-----HhCCCEEEEEEC
Q ss_pred CCC
Q 043051 455 RLD 457 (845)
Q Consensus 455 ~pd 457 (845)
...
T Consensus 176 ~~~ 178 (509)
T PRK09302 176 RGD 178 (509)
T ss_pred Ccc
No 456
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.15 E-value=0.044 Score=59.73 Aligned_cols=38 Identities=29% Similarity=0.391 Sum_probs=29.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeech
Q 043051 336 IYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGT 373 (845)
Q Consensus 336 ~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~s 373 (845)
...|+-++|+||+|+|||+++..+|..+ |..+..+++.
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3457889999999999999999998765 5566666554
No 457
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.15 E-value=0.012 Score=69.35 Aligned_cols=95 Identities=18% Similarity=0.306 Sum_probs=58.4
Q ss_pred CCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCce-EEEEcCCCChHHHHHHHHHHhcC---CCeEEeec-hhH
Q 043051 301 TGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKG-VLLHGPPGTGKTLLAKAIAGEAG---VPFFAANG-TDF 375 (845)
Q Consensus 301 ~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~Prg-VLL~GPPGTGKT~LArALA~elg---~pfi~vs~-sdf 375 (845)
...+++++.-.++..+.+..++. . |.| ++++||+|+|||++.+++..++. ..++.+-. -++
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~---~-----------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIR---R-----------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHh---c-----------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 45678888767766666655442 1 345 68999999999999998877664 33444321 111
Q ss_pred HHhh-----hhh-hhhhHHHHHHHHHhcCCcEEEEcccch
Q 043051 376 VEMF-----VGV-AASRVKDLFASARSFAPSIIFIDEIDA 409 (845)
Q Consensus 376 ~~~~-----vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDa 409 (845)
.-.. ++. ........+..+....|.+|+|.||-.
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 1000 110 011334556666677999999999744
No 458
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.14 E-value=0.024 Score=57.48 Aligned_cols=27 Identities=37% Similarity=0.466 Sum_probs=23.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA~el 363 (845)
.+..-+.|.||+|+|||+|++.+++..
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344568999999999999999999865
No 459
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.13 E-value=0.031 Score=57.50 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=23.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA~el 363 (845)
.+...+.|.||+|+|||+|.+.+++..
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345578999999999999999999976
No 460
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.12 E-value=0.07 Score=61.83 Aligned_cols=110 Identities=18% Similarity=0.163 Sum_probs=59.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc-----CCCeEEeechhHHH-------hh---------hhhhhhhHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA-----GVPFFAANGTDFVE-------MF---------VGVAASRVKDLFASARSF 397 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el-----g~pfi~vs~sdf~~-------~~---------vG~~~~~vr~lF~~A~~~ 397 (845)
++.++|.||+|+||||++..+|..+ +..+..+++..+.. .| +......+...+....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~-- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR-- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC--
Confidence 4678999999999999998887643 35666666655421 11 0112223333333322
Q ss_pred CCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhh
Q 043051 398 APSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPAL 463 (845)
Q Consensus 398 aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpAL 463 (845)
...+|+||..... ..+......|..++... .......+|+.+|..+..+...+
T Consensus 299 ~~DlVlIDt~G~~----------~~d~~~~~~L~~ll~~~---~~~~~~~LVl~a~~~~~~l~~~~ 351 (424)
T PRK05703 299 DCDVILIDTAGRS----------QRDKRLIEELKALIEFS---GEPIDVYLVLSATTKYEDLKDIY 351 (424)
T ss_pred CCCEEEEeCCCCC----------CCCHHHHHHHHHHHhcc---CCCCeEEEEEECCCCHHHHHHHH
Confidence 3578999976432 11233344555555521 11223355555555555555433
No 461
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.12 E-value=0.063 Score=56.92 Aligned_cols=64 Identities=23% Similarity=0.366 Sum_probs=38.8
Q ss_pred HHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCccc
Q 043051 391 FASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFD 470 (845)
Q Consensus 391 F~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFd 470 (845)
+..|-.+.|.||+-||--. .-+.+....+..++.++.. ..+ ..||..|.. +.+.. +.|
T Consensus 153 IARAL~~~P~iilADEPTg-----------nLD~~t~~~V~~ll~~~~~---~~g-~tii~VTHd-----~~lA~--~~d 210 (226)
T COG1136 153 IARALINNPKIILADEPTG-----------NLDSKTAKEVLELLRELNK---ERG-KTIIMVTHD-----PELAK--YAD 210 (226)
T ss_pred HHHHHhcCCCeEEeeCccc-----------cCChHHHHHHHHHHHHHHH---hcC-CEEEEEcCC-----HHHHH--hCC
Confidence 3444455799999999421 2234555667777777521 223 455556663 55666 788
Q ss_pred EEEEeC
Q 043051 471 KIVRVG 476 (845)
Q Consensus 471 r~I~v~ 476 (845)
++|.+.
T Consensus 211 r~i~l~ 216 (226)
T COG1136 211 RVIELK 216 (226)
T ss_pred EEEEEe
Confidence 888774
No 462
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.12 E-value=0.005 Score=61.12 Aligned_cols=28 Identities=36% Similarity=0.738 Sum_probs=26.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 043051 342 VLLHGPPGTGKTLLAKAIAGEAGVPFFA 369 (845)
Q Consensus 342 VLL~GPPGTGKT~LArALA~elg~pfi~ 369 (845)
|.|+|++|+|||++|+.+|+.+|.|++.
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 7899999999999999999999998764
No 463
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.10 E-value=0.0078 Score=51.64 Aligned_cols=30 Identities=27% Similarity=0.513 Sum_probs=23.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhc-CCCeEEee
Q 043051 342 VLLHGPPGTGKTLLAKAIAGEA-GVPFFAAN 371 (845)
Q Consensus 342 VLL~GPPGTGKT~LArALA~el-g~pfi~vs 371 (845)
+.+.|+||+|||+++++++..+ +.++..++
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~ 32 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLD 32 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEe
Confidence 6789999999999999999985 34444443
No 464
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.08 E-value=0.023 Score=63.31 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=60.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcC---------CCeEEeechh------HHHhh--hhhhh-------------
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEAG---------VPFFAANGTD------FVEMF--VGVAA------------- 384 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~elg---------~pfi~vs~sd------f~~~~--vG~~~------------- 384 (845)
|+....-+.|+||||+|||+|+..+|..+. ...++++..+ +.... .+...
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~ 171 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAY 171 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecC
Confidence 455566788999999999999999875321 2556666543 11100 01100
Q ss_pred --h----hHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEE
Q 043051 385 --S----RVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGA 452 (845)
Q Consensus 385 --~----~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaa 452 (845)
. .+..+........+.+|+||-|-++.+..- .+ .+....++..|.+++..+..+....+ +.||.+
T Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~-~~-~~~~~~rq~~l~~~~~~L~~la~~~~-vavv~t 242 (316)
T TIGR02239 172 NTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDF-SG-RGELSARQMHLARFLRSLQRLADEFG-VAVVIT 242 (316)
T ss_pred ChHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhc-CC-cchHHHHHHHHHHHHHHHHHHHHHhC-CEEEEE
Confidence 1 111112222334678999999999864311 00 01122344555666655544333333 555544
No 465
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.05 E-value=0.089 Score=53.93 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~e 362 (845)
.-++|.|++|+|||+|.+.+.+.
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999764
No 466
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.01 E-value=0.025 Score=57.42 Aligned_cols=73 Identities=26% Similarity=0.460 Sum_probs=41.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc-------------CCCeEEeechh----HHHh---------------hhhh------
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEA-------------GVPFFAANGTD----FVEM---------------FVGV------ 382 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~el-------------g~pfi~vs~sd----f~~~---------------~vG~------ 382 (845)
-++|+||||+|||+++-.+|..+ +.++++++... +... +...
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 113 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGCI 113 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccccc
Confidence 38899999999999999997644 23566665421 1111 0000
Q ss_pred -----------hhhhHHHHHHHHHh-cCCcEEEEcccchhccC
Q 043051 383 -----------AASRVKDLFASARS-FAPSIIFIDEIDAIGSK 413 (845)
Q Consensus 383 -----------~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~ 413 (845)
....++.+.+.+.. ..|.+|+||-+..+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 114 RLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp ---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 01223455666666 56899999999999653
No 467
>PRK08233 hypothetical protein; Provisional
Probab=96.01 E-value=0.0073 Score=60.57 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=26.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC-CCeEEeec
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAG-VPFFAANG 372 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg-~pfi~vs~ 372 (845)
.-|.|.|+||+||||+|+.|+..++ .+++..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 4578899999999999999999885 44444443
No 468
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.99 E-value=0.043 Score=59.11 Aligned_cols=66 Identities=21% Similarity=0.406 Sum_probs=42.0
Q ss_pred HHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccC
Q 043051 388 KDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKG 467 (845)
Q Consensus 388 r~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpg 467 (845)
|-++..|-...|.++++||--. +-+...+..+..+|.++.. .+ ..|+..|.....+ ..
T Consensus 147 RV~lARAL~~~p~lllLDEP~~-----------gvD~~~~~~i~~lL~~l~~----eg-~tIl~vtHDL~~v----~~-- 204 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFT-----------GVDVAGQKEIYDLLKELRQ----EG-KTVLMVTHDLGLV----MA-- 204 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcc-----------cCCHHHHHHHHHHHHHHHH----CC-CEEEEEeCCcHHh----Hh--
Confidence 4566677777899999999422 3355677888899988732 24 5566666655422 22
Q ss_pred cccEEEEe
Q 043051 468 RFDKIVRV 475 (845)
Q Consensus 468 RFdr~I~v 475 (845)
-||+++.+
T Consensus 205 ~~D~vi~L 212 (254)
T COG1121 205 YFDRVICL 212 (254)
T ss_pred hCCEEEEE
Confidence 45665544
No 469
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.98 E-value=0.021 Score=62.25 Aligned_cols=68 Identities=21% Similarity=0.294 Sum_probs=37.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHH-H--hh-hhhhhhhHHH----HHHHHHhcCCcEEEEcccchh
Q 043051 342 VLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFV-E--MF-VGVAASRVKD----LFASARSFAPSIIFIDEIDAI 410 (845)
Q Consensus 342 VLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~-~--~~-vG~~~~~vr~----lF~~A~~~aP~ILfIDEIDaL 410 (845)
|+|+|-||+|||++|+.|+..+ +..+..++-.++. . .| -...++.+|. .+..+.. ...||++|+...+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls-~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALS-KDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHT-T-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhc-cCeEEEEeCCchH
Confidence 7899999999999999998764 6777777755543 1 11 1223344443 3444433 3479999998777
No 470
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.98 E-value=0.021 Score=65.14 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=22.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAG 364 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg 364 (845)
.-++|+||||||||+|++.+++...
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc
Confidence 4599999999999999999999754
No 471
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.98 E-value=0.02 Score=63.14 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=32.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHH
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFV 376 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~ 376 (845)
+.|.-+++.|++|||||++|+.||..++.+. .+++..+.
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~-vi~~D~~r 128 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRS-VIGTDSIR 128 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCE-EEechHHH
Confidence 4578899999999999999999999999884 35555444
No 472
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.97 E-value=0.029 Score=68.80 Aligned_cols=66 Identities=27% Similarity=0.291 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccC
Q 043051 388 KDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKG 467 (845)
Q Consensus 388 r~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpg 467 (845)
|-.+..|--..|.||++||.-+- -+.+.+..+.+-|.++.+ + ..+|..|+|+. ..+
T Consensus 617 rlalARaLl~~P~ILlLDEaTSa-----------LD~~sE~~I~~~L~~~~~-----~-~T~I~IaHRl~-----ti~-- 672 (709)
T COG2274 617 RLALARALLSKPKILLLDEATSA-----------LDPETEAIILQNLLQILQ-----G-RTVIIIAHRLS-----TIR-- 672 (709)
T ss_pred HHHHHHHhccCCCEEEEeCcccc-----------cCHhHHHHHHHHHHHHhc-----C-CeEEEEEccch-----Hhh--
Confidence 34455555578999999996442 245667777777777642 2 34445566654 444
Q ss_pred cccEEEEeCC
Q 043051 468 RFDKIVRVGL 477 (845)
Q Consensus 468 RFdr~I~v~~ 477 (845)
+.|+.+.++.
T Consensus 673 ~adrIiVl~~ 682 (709)
T COG2274 673 SADRIIVLDQ 682 (709)
T ss_pred hccEEEEccC
Confidence 6777777654
No 473
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.97 E-value=0.011 Score=60.08 Aligned_cols=25 Identities=40% Similarity=0.682 Sum_probs=22.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
++.++|.||+|+|||+|++.|..+.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~ 26 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF 26 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999998865
No 474
>PRK14526 adenylate kinase; Provisional
Probab=95.97 E-value=0.0064 Score=63.81 Aligned_cols=34 Identities=29% Similarity=0.557 Sum_probs=27.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHH
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFV 376 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~ 376 (845)
.++|.||||+|||++++.+|+..+.+++ +..++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~i--s~G~ll 35 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHI--STGDLF 35 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee--ecChHH
Confidence 3789999999999999999999987665 444443
No 475
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.96 E-value=0.02 Score=70.69 Aligned_cols=71 Identities=23% Similarity=0.257 Sum_probs=43.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh---cCCCeEEeechhHHHh----hhhhhhhhHHHHHHH-HH----hcCCcEEEEccc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGE---AGVPFFAANGTDFVEM----FVGVAASRVKDLFAS-AR----SFAPSIIFIDEI 407 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~e---lg~pfi~vs~sdf~~~----~vG~~~~~vr~lF~~-A~----~~aP~ILfIDEI 407 (845)
+-++|.|+||||||++++++... .|..++.+..+.-... -.|.....+..+... .. .....+|+|||+
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEa 448 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEA 448 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECc
Confidence 45789999999999999999643 4666666644432221 123223334443221 11 123479999999
Q ss_pred chh
Q 043051 408 DAI 410 (845)
Q Consensus 408 DaL 410 (845)
-.+
T Consensus 449 sMv 451 (744)
T TIGR02768 449 GMV 451 (744)
T ss_pred ccC
Confidence 887
No 476
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.95 E-value=0.015 Score=61.14 Aligned_cols=40 Identities=33% Similarity=0.409 Sum_probs=30.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCeEEeechh
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGE---AGVPFFAANGTD 374 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~e---lg~pfi~vs~sd 374 (845)
|......++|+||||||||+++..++.+ .|.+.++++..+
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~ 58 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE 58 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 5566678999999999999999987643 266777777643
No 477
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.94 E-value=0.025 Score=63.60 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=63.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCeEEeechh------HHHhh--hhhh--------------
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---------GVPFFAANGTD------FVEMF--VGVA-------------- 383 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---------g~pfi~vs~sd------f~~~~--vG~~-------------- 383 (845)
|.....-++++|+||+|||.|+..+|-.. +.+.++++... +.+.. .|..
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~ 198 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAY 198 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecC
Confidence 44455567899999999999999887432 22567776543 11110 0100
Q ss_pred -hhhHHHHHH----HHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEc
Q 043051 384 -ASRVKDLFA----SARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGAT 453 (845)
Q Consensus 384 -~~~vr~lF~----~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaT 453 (845)
...+..++. ......+.+|+||-|-++.+.-- .+ .+....++..|.+++..+..+....+ +.||.+.
T Consensus 199 ~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~-~~-~g~l~~r~~~L~~~l~~L~~lA~~~~-vaVviTN 270 (342)
T PLN03186 199 NTDHQSELLLEAASMMAETRFALMIVDSATALYRTEF-SG-RGELSARQMHLGKFLRSLQRLADEFG-VAVVITN 270 (342)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHh-cC-CccHHHHHHHHHHHHHHHHHHHHHcC-CEEEEEc
Confidence 011111222 22345688999999999865311 00 11223455567777766554443344 5555443
No 478
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.94 E-value=0.023 Score=66.91 Aligned_cols=77 Identities=23% Similarity=0.320 Sum_probs=53.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHhh------hhh----------------------h
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEMF------VGV----------------------A 383 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~~------vG~----------------------~ 383 (845)
|......+|+.||||||||+|+-.++.+. |-+.++++..+-.+.+ .|. .
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 45556679999999999999999987654 6677777764332211 110 0
Q ss_pred hhhHHHHHHHHHhcCCcEEEEcccchhc
Q 043051 384 ASRVKDLFASARSFAPSIIFIDEIDAIG 411 (845)
Q Consensus 384 ~~~vr~lF~~A~~~aP~ILfIDEIDaL~ 411 (845)
...+..+.+......|.+|+||-+..+.
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 2344556666667789999999999884
No 479
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.92 E-value=0.037 Score=59.78 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=21.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
..-+-|.||.|||||||.|++++-+
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3457799999999999999999854
No 480
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.90 E-value=0.0096 Score=59.63 Aligned_cols=38 Identities=29% Similarity=0.502 Sum_probs=29.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHH
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFV 376 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~ 376 (845)
|.-|.|+|.||+|||+||+++...+ |.+.+.+++..+.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR 42 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLR 42 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchh
Confidence 4568999999999999999998765 7777777776543
No 481
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=95.89 E-value=0.0091 Score=67.09 Aligned_cols=70 Identities=23% Similarity=0.343 Sum_probs=47.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC--CeEEeec-hhHH-------Hhh------hhhhhhhHHHHHHHHHhcCCcEE
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGV--PFFAANG-TDFV-------EMF------VGVAASRVKDLFASARSFAPSII 402 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~--pfi~vs~-sdf~-------~~~------vG~~~~~vr~lF~~A~~~aP~IL 402 (845)
.+++++.|++|+|||++.+++.+...- ..+.+.. .++. ... .|.+.-.+.+++..+..+.|..|
T Consensus 178 ~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El~~~~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~PD~I 257 (340)
T TIGR03819 178 RLAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDLVRQALRMRPDRI 257 (340)
T ss_pred CCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCcceecCCCCCeeeEEeccccccCcCccCHHHHHHHHhccCCCeE
Confidence 358999999999999999999887631 1222211 1111 000 12233467788999999999999
Q ss_pred EEcccc
Q 043051 403 FIDEID 408 (845)
Q Consensus 403 fIDEID 408 (845)
+|.|+-
T Consensus 258 ivGEiR 263 (340)
T TIGR03819 258 VVGEVR 263 (340)
T ss_pred EEeCcC
Confidence 999974
No 482
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.88 E-value=0.037 Score=58.63 Aligned_cols=105 Identities=16% Similarity=0.167 Sum_probs=57.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHH-h----cCCCe---------E-----EeechhHHH---hhhhhhhhhHHHHHHHHHh
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAG-E----AGVPF---------F-----AANGTDFVE---MFVGVAASRVKDLFASARS 396 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~-e----lg~pf---------i-----~vs~sdf~~---~~vG~~~~~vr~lF~~A~~ 396 (845)
..-++|.||.|+|||++.+.++. . .|.+. + .+...+-.. ......-.++..+++.+.
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~- 109 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCT- 109 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCC-
Confidence 34689999999999999999987 2 13221 1 111111111 012223345666666654
Q ss_pred cCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCC
Q 043051 397 FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDIL 459 (845)
Q Consensus 397 ~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~L 459 (845)
.+.+++|||+..= ....+.......++..+.. ..+..+|.+|...+..
T Consensus 110 -~~sLvllDE~~~g----------T~~~d~~~i~~~il~~l~~----~~~~~~i~~TH~~~l~ 157 (222)
T cd03287 110 -SRSLVILDELGRG----------TSTHDGIAIAYATLHYLLE----EKKCLVLFVTHYPSLG 157 (222)
T ss_pred -CCeEEEEccCCCC----------CChhhHHHHHHHHHHHHHh----ccCCeEEEEcccHHHH
Confidence 4789999997541 1112222223344444321 1225677788877654
No 483
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.87 E-value=0.0059 Score=62.89 Aligned_cols=22 Identities=45% Similarity=0.792 Sum_probs=17.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 043051 342 VLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 342 VLL~GPPGTGKT~LArALA~el 363 (845)
.++.||||||||+++.+++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999998777765554
No 484
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.85 E-value=0.071 Score=55.69 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAG 361 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~ 361 (845)
+-++|+||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999964
No 485
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=95.84 E-value=0.19 Score=57.09 Aligned_cols=53 Identities=8% Similarity=0.058 Sum_probs=33.8
Q ss_pred EEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHH
Q 043051 472 IVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNIL 525 (845)
Q Consensus 472 ~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~Lv 525 (845)
.|+++.++.+|-.+++..+++..-+......+...+++--+. +..|+.+..+|
T Consensus 405 pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lc 457 (461)
T KOG3928|consen 405 PIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLC 457 (461)
T ss_pred ccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHH
Confidence 578889999999999998887644331111133344444444 45777776665
No 486
>PLN02459 probable adenylate kinase
Probab=95.83 E-value=0.0095 Score=64.43 Aligned_cols=35 Identities=31% Similarity=0.476 Sum_probs=28.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHH
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFV 376 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~ 376 (845)
..++|.||||+|||++|+.+|...+++.+ +..++.
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~i--s~gdll 64 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHI--ATGDLV 64 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEE--eCcHHH
Confidence 45888999999999999999999986655 444544
No 487
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.83 E-value=0.019 Score=60.03 Aligned_cols=23 Identities=57% Similarity=0.710 Sum_probs=18.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~el 363 (845)
-+.+.||.|||||+||-+.|-++
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 58999999999999999998755
No 488
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.82 E-value=0.0097 Score=58.08 Aligned_cols=28 Identities=36% Similarity=0.515 Sum_probs=25.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCC
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVP 366 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~p 366 (845)
..-++|.|+.|+|||+++|++++.++.+
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 4568999999999999999999999865
No 489
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.77 E-value=0.011 Score=61.28 Aligned_cols=38 Identities=26% Similarity=0.339 Sum_probs=29.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcC-CCeEEeechhH
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEAG-VPFFAANGTDF 375 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~elg-~pfi~vs~sdf 375 (845)
.|.-|.|.||+|||||||+++|++.++ ..+..++..+|
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~ 43 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY 43 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence 356789999999999999999999883 34555555544
No 490
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.76 E-value=0.067 Score=61.85 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=31.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhH
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDF 375 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf 375 (845)
..|.-++|+||+|+||||++..+|..+ |..+..+++..+
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~ 139 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTF 139 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence 347789999999999999999998766 667777776443
No 491
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.76 E-value=0.043 Score=55.73 Aligned_cols=40 Identities=23% Similarity=0.405 Sum_probs=32.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHH
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVE 377 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~ 377 (845)
.+.-++|.|+||+|||++|+++++.+ +...+.+++..+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~ 59 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRH 59 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHh
Confidence 45678999999999999999999886 45567777766543
No 492
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.75 E-value=0.015 Score=59.27 Aligned_cols=25 Identities=32% Similarity=0.583 Sum_probs=22.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
++.++|+||+|+||+++++.|..+.
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3579999999999999999998874
No 493
>PF13479 AAA_24: AAA domain
Probab=95.74 E-value=0.017 Score=60.45 Aligned_cols=68 Identities=25% Similarity=0.399 Sum_probs=38.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeE-EeechhH-HHh------hhhhhhhhHHHHHHHHH--hcCCcEEEEcccc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFF-AANGTDF-VEM------FVGVAASRVKDLFASAR--SFAPSIIFIDEID 408 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi-~vs~sdf-~~~------~vG~~~~~vr~lF~~A~--~~aP~ILfIDEID 408 (845)
+..++||||||+|||++|..+ +-|++ .+..... ... +.-.+-..+.+.+..+. ...-.+|+||-++
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis 78 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSIS 78 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHH
Confidence 457999999999999999888 33332 1111100 000 00012334555554432 2233599999888
Q ss_pred hh
Q 043051 409 AI 410 (845)
Q Consensus 409 aL 410 (845)
.+
T Consensus 79 ~~ 80 (213)
T PF13479_consen 79 WL 80 (213)
T ss_pred HH
Confidence 76
No 494
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.74 E-value=0.02 Score=66.47 Aligned_cols=97 Identities=22% Similarity=0.334 Sum_probs=59.7
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCce-EEEEcCCCChHHHHHHHHHHhcCCCeE-EeechhHHH
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKG-VLLHGPPGTGKTLLAKAIAGEAGVPFF-AANGTDFVE 377 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~Prg-VLL~GPPGTGKT~LArALA~elg~pfi-~vs~sdf~~ 377 (845)
....+|+++.......+.+..++ .. |.| +|++||.|+|||++..++.++++-+.. .++..|-++
T Consensus 232 ~~~l~l~~Lg~~~~~~~~~~~~~---~~-----------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE 297 (500)
T COG2804 232 QVILDLEKLGMSPFQLARLLRLL---NR-----------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVE 297 (500)
T ss_pred cccCCHHHhCCCHHHHHHHHHHH---hC-----------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCee
Confidence 45677888887776666555544 22 445 567899999999999999998876554 223223222
Q ss_pred hh-hhhhh--------hhHHHHHHHHHhcCCcEEEEcccchh
Q 043051 378 MF-VGVAA--------SRVKDLFASARSFAPSIIFIDEIDAI 410 (845)
Q Consensus 378 ~~-vG~~~--------~~vr~lF~~A~~~aP~ILfIDEIDaL 410 (845)
.. .|... -.....+.....+.|.||+|.||-..
T Consensus 298 ~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD~ 339 (500)
T COG2804 298 YQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRDL 339 (500)
T ss_pred eecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCCH
Confidence 11 01000 01123344445568999999998543
No 495
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.74 E-value=0.0093 Score=60.87 Aligned_cols=29 Identities=31% Similarity=0.501 Sum_probs=25.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeE
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAGVPFF 368 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg~pfi 368 (845)
..++|.||+|+|||+|++.|++..+.+|+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 35899999999999999999998876543
No 496
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=95.73 E-value=0.11 Score=52.32 Aligned_cols=133 Identities=13% Similarity=0.111 Sum_probs=70.1
Q ss_pred EcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCch
Q 043051 345 HGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGA 424 (845)
Q Consensus 345 ~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~ 424 (845)
.+.+||||||+|.||++-.|- +-.+.-.++..+ ....-++.+++...+....+||+|-=... ..
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~------------~r 68 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNHQ------------KR 68 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCch------------HH
Confidence 589999999999999998872 323333343222 23344455555554444568888843332 23
Q ss_pred HHHHHHHHHHHhhcC-CcccCCcEEEEEEcCCCCCCC--------hhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhh
Q 043051 425 EREQGLLQILTEMDG-FKVSTSQVLVIGATNRLDILD--------PALLRKGRFDKIVRVGLPSKDGRFAILKVHARNK 494 (845)
Q Consensus 425 e~~~~L~qLL~emdg-~~~~~~~ViVIaaTN~pd~LD--------pALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~ 494 (845)
++.+.+ ..+..+.. +-....++-+||-.=..+.-. ..++.+|==.+.|.....+...-..|+...++..
T Consensus 69 eR~ql~-~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rf 146 (168)
T PF08303_consen 69 ERKQLF-EDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRF 146 (168)
T ss_pred HHHHHH-HHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhc
Confidence 333333 33333211 111223466776663332211 2233322111256666666777778887777653
No 497
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=95.73 E-value=0.33 Score=52.11 Aligned_cols=184 Identities=14% Similarity=0.180 Sum_probs=96.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeech--hHHHhhhh--hhhhhHHHHHHHHHh------cCCcEE--E
Q 043051 336 IYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGT--DFVEMFVG--VAASRVKDLFASARS------FAPSII--F 403 (845)
Q Consensus 336 ~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~s--df~~~~vG--~~~~~vr~lF~~A~~------~aP~IL--f 403 (845)
.+.|.-+||=|+||+|||++|.-+|.++|.+-+.-.-+ +++-..++ .-+.--...|..=+. ..| || |
T Consensus 86 ~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~p-iiaGF 164 (299)
T COG2074 86 MKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENP-IIAGF 164 (299)
T ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcc-hhhhH
Confidence 34588899999999999999999999999876532211 11111111 000000111111111 011 11 2
Q ss_pred EcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHH
Q 043051 404 IDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGR 483 (845)
Q Consensus 404 IDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR 483 (845)
.|....+ .-.++.++..- . ....++++=+.-=-|..+++..+-.. ...+.+-.+|.+.-
T Consensus 165 ~dqa~~V----------------~~GI~~VI~RA--i-~eG~~lIIEGvHlVPg~i~~~~~~~n--~~~~~l~i~dee~H 223 (299)
T COG2074 165 EDQASAV----------------MVGIEAVIERA--I-EEGEDLIIEGVHLVPGLIKEEALGNN--VFMFMLYIADEELH 223 (299)
T ss_pred HHHhHHH----------------HHHHHHHHHHH--H-hcCcceEEEeeeeccccccHhhhccc--eEEEEEEeCCHHHH
Confidence 2322222 12223333221 0 11222444444456788877776222 23455666777666
Q ss_pred HHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 484 FAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 484 ~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
+.-|-...+..... .-....++. -.+++.+-+.....|...+-..|..+|+.+++++.
T Consensus 224 r~RF~~R~~~t~~~------rp~~Ryl~y-----f~EiR~I~Dyl~~~Are~gVPvI~n~di~etv~~i 281 (299)
T COG2074 224 RERFYDRIRYTHAS------RPGGRYLEY-----FKEIRTIHDYLVERAREHGVPVIENDDIDETVDRI 281 (299)
T ss_pred HHHHHHHHHHHhcc------CchhHHHHH-----HHHHHHHHHHHHHHHHhcCCCeeccccHHHHHHHH
Confidence 55554433322111 001122221 13677777777777888898999999999999988
No 498
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.72 E-value=0.098 Score=54.86 Aligned_cols=125 Identities=24% Similarity=0.347 Sum_probs=74.6
Q ss_pred CcHHHhhcCCCCCce--EEEEcCCCChHHHHHHHHHHhc---CCCeEEeech----hHHHh-------------------
Q 043051 327 NDEEFQNKGIYCPKG--VLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGT----DFVEM------------------- 378 (845)
Q Consensus 327 ~p~~~~~~g~~~Prg--VLL~GPPGTGKT~LArALA~el---g~pfi~vs~s----df~~~------------------- 378 (845)
+.+.-+++|.-.|.| +++.|+.|||||.|.+.++--+ |....+++.. +|...
T Consensus 14 ndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~ 93 (235)
T COG2874 14 NDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLF 93 (235)
T ss_pred cHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEE
Confidence 444445677666655 7788999999999999986532 4444444321 11110
Q ss_pred ----------hhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEE
Q 043051 379 ----------FVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVL 448 (845)
Q Consensus 379 ----------~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~Vi 448 (845)
-.......+..+.+..+.....||+||-+..+.... ..+.+++++..+..+. +.++++
T Consensus 94 ~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~-----------~~~~vl~fm~~~r~l~-d~gKvI 161 (235)
T COG2874 94 FPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD-----------SEDAVLNFMTFLRKLS-DLGKVI 161 (235)
T ss_pred EEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc-----------cHHHHHHHHHHHHHHH-hCCCEE
Confidence 011223344455555555667899999999985421 2344555555544433 345455
Q ss_pred EEEEcCCCCCCChhhhc
Q 043051 449 VIGATNRLDILDPALLR 465 (845)
Q Consensus 449 VIaaTN~pd~LDpALlR 465 (845)
++ |-+|..++.+++.
T Consensus 162 il--Tvhp~~l~e~~~~ 176 (235)
T COG2874 162 IL--TVHPSALDEDVLT 176 (235)
T ss_pred EE--EeChhhcCHHHHH
Confidence 55 5568888888887
No 499
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.70 E-value=0.1 Score=53.92 Aligned_cols=22 Identities=55% Similarity=0.874 Sum_probs=20.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 043051 342 VLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 342 VLL~GPPGTGKT~LArALA~el 363 (845)
++|+||+|.|||+|.|.|..+.
T Consensus 31 ~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 31 VFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred EEEECCCCCCHHHHHHHHHhhh
Confidence 7899999999999999998764
No 500
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.69 E-value=0.07 Score=60.57 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=21.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~el 363 (845)
-.+|+||||||||+|++.+++.+
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 36999999999999999998866
Done!