Query 043051
Match_columns 845
No_of_seqs 662 out of 4178
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 21:42:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043051.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043051hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 100.0 1.1E-79 3.7E-84 705.1 46.5 434 293-744 3-458 (476)
2 2dhr_A FTSH; AAA+ protein, hex 100.0 4.9E-78 1.7E-82 695.0 43.6 445 281-746 9-470 (499)
3 4b4t_J 26S protease regulatory 100.0 5.6E-51 1.9E-55 455.9 27.0 249 298-552 140-389 (405)
4 4b4t_I 26S protease regulatory 100.0 6.1E-50 2.1E-54 449.0 26.7 253 295-553 171-424 (437)
5 4b4t_H 26S protease regulatory 100.0 2.3E-49 7.9E-54 448.0 25.6 256 297-562 200-456 (467)
6 4b4t_M 26S protease regulatory 100.0 3.9E-49 1.3E-53 446.4 25.9 251 298-554 173-424 (434)
7 4b4t_L 26S protease subunit RP 100.0 8.4E-49 2.9E-53 444.0 26.3 249 299-553 174-423 (437)
8 4b4t_K 26S protease regulatory 100.0 6.9E-48 2.4E-52 435.8 27.7 249 298-552 164-414 (428)
9 2di4_A Zinc protease, cell div 100.0 2.9E-43 9.9E-48 368.0 18.0 183 558-746 2-203 (238)
10 3cf2_A TER ATPase, transitiona 100.0 1.3E-43 4.3E-48 426.7 8.9 251 300-556 471-747 (806)
11 3cf2_A TER ATPase, transitiona 100.0 8.9E-41 3E-45 402.0 21.1 250 299-557 197-464 (806)
12 1lv7_A FTSH; alpha/beta domain 100.0 1.5E-37 5.2E-42 327.1 26.8 249 298-552 4-252 (257)
13 3cf0_A Transitional endoplasmi 100.0 7E-37 2.4E-41 331.1 23.9 248 300-553 9-282 (301)
14 2x8a_A Nuclear valosin-contain 100.0 7.3E-37 2.5E-41 327.7 21.8 251 300-556 4-268 (274)
15 2qz4_A Paraplegin; AAA+, SPG7, 100.0 7.1E-37 2.4E-41 320.7 20.6 249 301-552 1-249 (262)
16 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.2E-35 4.2E-40 325.0 27.0 226 300-535 6-233 (322)
17 3h4m_A Proteasome-activating n 100.0 2.9E-35 9.8E-40 313.4 26.9 248 299-552 10-258 (285)
18 3eie_A Vacuolar protein sortin 100.0 1.1E-35 3.8E-40 324.5 23.5 247 299-555 11-301 (322)
19 1ixz_A ATP-dependent metallopr 100.0 1.1E-34 3.7E-39 304.9 27.0 244 300-549 10-253 (254)
20 2qp9_X Vacuolar protein sortin 100.0 1.6E-34 5.5E-39 320.2 26.1 246 299-554 44-333 (355)
21 1iy2_A ATP-dependent metallopr 100.0 1.2E-33 4.1E-38 301.6 28.2 255 287-549 23-277 (278)
22 2r62_A Cell division protease 100.0 9.5E-37 3.3E-41 322.3 2.5 250 299-552 4-253 (268)
23 2zan_A Vacuolar protein sortin 100.0 2.4E-33 8.1E-38 319.7 24.6 227 299-535 127-355 (444)
24 3hu3_A Transitional endoplasmi 100.0 4.4E-33 1.5E-37 321.0 25.4 246 300-554 198-461 (489)
25 3d8b_A Fidgetin-like protein 1 100.0 3.6E-31 1.2E-35 293.2 25.9 245 300-554 78-336 (357)
26 3b9p_A CG5977-PA, isoform A; A 100.0 5.2E-31 1.8E-35 282.4 24.9 245 299-553 14-273 (297)
27 3vfd_A Spastin; ATPase, microt 100.0 1.9E-30 6.6E-35 290.2 24.1 246 298-553 107-366 (389)
28 1ypw_A Transitional endoplasmi 100.0 5.2E-33 1.8E-37 338.0 -6.5 231 300-536 471-702 (806)
29 3t15_A Ribulose bisphosphate c 100.0 3.6E-30 1.2E-34 278.0 10.6 236 334-586 31-281 (293)
30 1ypw_A Transitional endoplasmi 99.9 6.4E-27 2.2E-31 284.6 22.9 246 300-554 198-461 (806)
31 2c9o_A RUVB-like 1; hexameric 99.9 9.2E-25 3.2E-29 249.5 11.9 172 300-479 31-225 (456)
32 3syl_A Protein CBBX; photosynt 99.9 2.2E-22 7.5E-27 216.1 20.5 225 305-546 29-280 (309)
33 3uk6_A RUVB-like 2; hexameric 99.9 1.3E-22 4.3E-27 223.3 18.8 221 301-552 39-330 (368)
34 3pfi_A Holliday junction ATP-d 99.9 1.7E-21 5.7E-26 212.4 25.5 222 298-552 21-254 (338)
35 1hqc_A RUVB; extended AAA-ATPa 99.8 2.4E-20 8.1E-25 201.4 20.4 222 299-552 5-238 (324)
36 1d2n_A N-ethylmaleimide-sensit 99.8 8.8E-20 3E-24 193.4 18.4 228 304-552 31-264 (272)
37 1ofh_A ATP-dependent HSL prote 99.8 1.4E-19 4.7E-24 193.4 19.0 238 306-552 15-299 (310)
38 3pvs_A Replication-associated 99.8 4.7E-20 1.6E-24 210.4 14.0 212 298-552 18-244 (447)
39 2chg_A Replication factor C sm 99.8 2.4E-18 8.2E-23 172.7 22.3 205 298-550 9-224 (226)
40 3u61_B DNA polymerase accessor 99.8 4.8E-19 1.6E-23 192.0 17.6 211 293-551 13-236 (324)
41 2z4s_A Chromosomal replication 99.8 2.1E-18 7.2E-23 196.4 22.8 223 300-552 99-332 (440)
42 3hws_A ATP-dependent CLP prote 99.8 1.4E-18 5E-23 192.0 19.7 239 307-549 16-346 (363)
43 1l8q_A Chromosomal replication 99.8 6.2E-18 2.1E-22 183.6 24.1 199 300-531 5-214 (324)
44 3m6a_A ATP-dependent protease 99.8 2.5E-19 8.6E-24 209.1 13.7 230 302-552 77-341 (543)
45 1g41_A Heat shock protein HSLU 99.8 3.1E-20 1.1E-24 210.7 5.4 170 306-489 15-190 (444)
46 3bos_A Putative DNA replicatio 99.8 8.7E-18 3E-22 172.0 21.9 207 301-550 23-241 (242)
47 2v1u_A Cell division control p 99.8 4.1E-18 1.4E-22 186.9 20.5 228 302-552 15-276 (387)
48 1sxj_A Activator 1 95 kDa subu 99.8 2.3E-18 7.9E-23 199.6 17.7 231 294-552 27-274 (516)
49 1g8p_A Magnesium-chelatase 38 99.8 1.5E-17 5E-22 181.2 22.8 222 300-552 18-322 (350)
50 1njg_A DNA polymerase III subu 99.8 3.1E-17 1E-21 166.2 22.8 207 297-549 14-248 (250)
51 2r44_A Uncharacterized protein 99.8 1E-17 3.5E-22 182.3 20.4 218 302-552 23-297 (331)
52 1in4_A RUVB, holliday junction 99.8 6.2E-17 2.1E-21 177.4 25.4 220 300-552 19-250 (334)
53 1sxj_D Activator 1 41 kDa subu 99.8 1.2E-17 4.2E-22 181.8 18.0 216 294-552 25-263 (353)
54 2qby_B CDC6 homolog 3, cell di 99.7 4.7E-17 1.6E-21 179.2 22.0 215 305-552 19-270 (384)
55 4fcw_A Chaperone protein CLPB; 99.7 5.3E-17 1.8E-21 174.1 18.5 211 306-533 17-279 (311)
56 1jbk_A CLPB protein; beta barr 99.7 9.4E-18 3.2E-22 164.5 11.1 161 300-487 16-194 (195)
57 2qby_A CDC6 homolog 1, cell di 99.7 2.1E-16 7.1E-21 173.0 22.5 227 301-552 15-272 (386)
58 2chq_A Replication factor C sm 99.7 2.8E-17 9.7E-22 175.9 15.3 210 295-552 6-226 (319)
59 1sxj_B Activator 1 37 kDa subu 99.7 1.7E-16 5.9E-21 170.1 21.3 210 295-552 10-231 (323)
60 1um8_A ATP-dependent CLP prote 99.7 8.4E-17 2.9E-21 178.5 18.7 242 307-551 22-364 (376)
61 1r6b_X CLPA protein; AAA+, N-t 99.7 4.4E-17 1.5E-21 196.8 17.5 224 300-552 180-433 (758)
62 3pxg_A Negative regulator of g 99.7 2.6E-17 9E-22 188.7 14.7 209 299-552 173-406 (468)
63 1iqp_A RFCS; clamp loader, ext 99.7 4.3E-16 1.5E-20 167.3 22.1 210 295-552 14-234 (327)
64 1jr3_A DNA polymerase III subu 99.7 5.7E-16 1.9E-20 169.9 22.9 209 298-552 8-244 (373)
65 2bjv_A PSP operon transcriptio 99.7 3E-16 1E-20 165.4 15.9 212 303-545 3-250 (265)
66 3pxi_A Negative regulator of g 99.7 3.6E-16 1.2E-20 189.1 18.7 204 306-531 491-723 (758)
67 1fnn_A CDC6P, cell division co 99.7 1.9E-15 6.6E-20 166.2 22.8 224 302-552 13-274 (389)
68 1r6b_X CLPA protein; AAA+, N-t 99.7 8E-16 2.7E-20 185.9 20.8 203 306-531 458-714 (758)
69 1qvr_A CLPB protein; coiled co 99.7 3.5E-16 1.2E-20 191.6 17.4 206 300-535 164-395 (854)
70 1sxj_C Activator 1 40 kDa subu 99.7 1.7E-15 5.9E-20 165.8 18.6 215 294-551 13-238 (340)
71 3nbx_X ATPase RAVA; AAA+ ATPas 99.7 4.4E-16 1.5E-20 179.8 14.4 215 306-552 22-285 (500)
72 2p65_A Hypothetical protein PF 99.7 3.6E-16 1.2E-20 153.3 11.8 154 300-479 16-187 (187)
73 1sxj_E Activator 1 40 kDa subu 99.7 2.5E-15 8.7E-20 164.1 19.5 197 295-531 3-243 (354)
74 3pxi_A Negative regulator of g 99.7 8.8E-16 3E-20 185.7 17.4 193 299-536 173-389 (758)
75 3te6_A Regulatory protein SIR3 99.6 1.3E-15 4.5E-20 166.2 15.7 199 308-534 22-288 (318)
76 1ojl_A Transcriptional regulat 99.6 1.5E-15 5E-20 164.7 13.6 210 306-547 2-247 (304)
77 3f9v_A Minichromosome maintena 99.6 3.2E-16 1.1E-20 184.7 3.0 227 306-552 295-587 (595)
78 1qvr_A CLPB protein; coiled co 99.6 8.7E-15 3E-19 179.3 15.3 209 305-532 557-819 (854)
79 3n70_A Transport activator; si 99.5 2.4E-14 8.1E-19 138.1 10.8 114 306-457 1-117 (145)
80 3co5_A Putative two-component 99.5 8.8E-15 3E-19 140.9 6.9 112 307-456 5-116 (143)
81 1w5s_A Origin recognition comp 99.5 3.7E-13 1.3E-17 149.3 19.6 231 303-552 19-293 (412)
82 3k1j_A LON protease, ATP-depen 99.5 2.1E-13 7E-18 161.1 16.8 226 299-552 34-375 (604)
83 1ny5_A Transcriptional regulat 99.4 1.7E-12 5.7E-17 145.4 15.2 215 305-550 136-385 (387)
84 1a5t_A Delta prime, HOLB; zinc 99.4 5.1E-12 1.8E-16 138.3 17.8 159 337-528 22-208 (334)
85 3cmw_A Protein RECA, recombina 99.3 1.3E-12 4.3E-17 167.5 8.2 155 300-456 1014-1218(1706)
86 2gno_A DNA polymerase III, gam 99.3 2.4E-11 8.3E-16 131.9 14.0 142 310-491 1-152 (305)
87 3ec2_A DNA replication protein 99.3 3.7E-11 1.3E-15 119.0 13.1 136 299-457 3-144 (180)
88 4akg_A Glutathione S-transfera 99.2 7.3E-11 2.5E-15 157.3 18.4 140 339-494 1267-1434(2695)
89 3f8t_A Predicted ATPase involv 99.2 4.3E-10 1.5E-14 127.7 17.0 216 308-552 215-483 (506)
90 3kw6_A 26S protease regulatory 99.1 8.5E-11 2.9E-15 102.0 8.3 73 476-552 1-73 (78)
91 3dzd_A Transcriptional regulat 99.1 2.5E-10 8.7E-15 126.9 13.8 198 306-532 129-361 (368)
92 2krk_A 26S protease regulatory 99.1 8.8E-11 3E-15 104.2 7.0 75 475-553 8-82 (86)
93 2w58_A DNAI, primosome compone 99.1 2.4E-10 8.1E-15 115.0 10.6 104 300-410 19-127 (202)
94 3vlf_B 26S protease regulatory 99.0 3.3E-10 1.1E-14 100.8 7.5 76 479-562 2-77 (88)
95 3aji_B S6C, proteasome (prosom 98.9 2E-09 7E-14 94.3 6.2 73 479-555 2-74 (83)
96 2kjq_A DNAA-related protein; s 98.9 2.9E-09 1E-13 103.5 7.8 100 339-471 36-141 (149)
97 2fna_A Conserved hypothetical 98.9 6.4E-08 2.2E-12 104.3 18.9 188 301-527 8-252 (357)
98 2qen_A Walker-type ATPase; unk 98.8 3.5E-07 1.2E-11 98.4 23.6 192 301-526 7-247 (350)
99 2qgz_A Helicase loader, putati 98.8 3.2E-09 1.1E-13 115.2 7.2 102 301-410 119-226 (308)
100 2dzn_B 26S protease regulatory 98.7 3.1E-09 1.1E-13 93.1 2.8 68 481-552 1-68 (82)
101 2vhj_A Ntpase P4, P4; non- hyd 98.7 4.4E-09 1.5E-13 114.6 3.8 119 338-463 122-242 (331)
102 4akg_A Glutathione S-transfera 98.7 3.9E-07 1.3E-11 122.0 20.4 167 340-531 646-839 (2695)
103 2r2a_A Uncharacterized protein 98.6 7.1E-08 2.4E-12 98.4 8.6 131 339-483 5-158 (199)
104 1jr3_D DNA polymerase III, del 98.5 7.9E-07 2.7E-11 97.0 15.0 179 338-552 17-209 (343)
105 1svm_A Large T antigen; AAA+ f 98.5 1E-07 3.4E-12 106.4 6.0 119 334-477 164-284 (377)
106 3vkg_A Dynein heavy chain, cyt 98.4 2.6E-06 8.9E-11 115.0 17.9 139 339-493 1304-1471(3245)
107 3cmu_A Protein RECA, recombina 98.3 5.9E-07 2E-11 117.0 8.7 119 335-455 1423-1562(2050)
108 1tue_A Replication protein E1; 98.1 2E-06 6.8E-11 88.1 6.4 30 339-368 58-87 (212)
109 3vkg_A Dynein heavy chain, cyt 98.0 3.2E-05 1.1E-09 104.7 14.0 125 340-487 605-749 (3245)
110 1ye8_A Protein THEP1, hypothet 97.9 2.5E-05 8.6E-10 77.9 9.5 28 341-368 2-29 (178)
111 1u0j_A DNA replication protein 97.9 1.2E-05 4.1E-10 85.5 7.3 27 339-365 104-130 (267)
112 2cvh_A DNA repair and recombin 97.8 4.5E-05 1.5E-09 76.7 8.7 40 335-374 16-55 (220)
113 3upu_A ATP-dependent DNA helic 97.8 7.7E-05 2.6E-09 84.9 10.8 104 295-410 13-140 (459)
114 2w0m_A SSO2452; RECA, SSPF, un 97.7 0.00015 5.1E-09 73.1 11.1 38 335-372 19-59 (235)
115 1z6t_A APAF-1, apoptotic prote 97.7 0.0011 3.9E-08 77.0 19.5 175 301-523 119-326 (591)
116 2ehv_A Hypothetical protein PH 97.6 0.00021 7E-09 73.2 10.3 37 336-372 27-67 (251)
117 1qhx_A CPT, protein (chloramph 97.6 4.9E-05 1.7E-09 74.2 5.4 39 339-377 3-41 (178)
118 1n0w_A DNA repair protein RAD5 97.6 0.00017 5.7E-09 73.6 9.3 78 335-412 20-133 (243)
119 2r8r_A Sensor protein; KDPD, P 97.5 0.0015 5.1E-08 67.8 15.5 121 340-481 7-168 (228)
120 1xp8_A RECA protein, recombina 97.5 0.00024 8.2E-09 78.8 9.9 78 335-412 70-166 (366)
121 2zr9_A Protein RECA, recombina 97.5 0.00012 4E-09 80.8 6.8 78 335-412 57-153 (349)
122 2z43_A DNA repair and recombin 97.5 0.00021 7.2E-09 77.6 8.5 78 335-412 103-217 (324)
123 2orw_A Thymidine kinase; TMTK, 97.5 9E-05 3.1E-09 74.2 5.1 70 340-410 4-88 (184)
124 3cmu_A Protein RECA, recombina 97.4 0.00016 5.4E-09 94.6 7.5 118 335-453 728-866 (2050)
125 3hr8_A Protein RECA; alpha and 97.4 0.00029 9.8E-09 77.9 8.4 78 335-412 57-153 (356)
126 1gvn_B Zeta; postsegregational 97.4 0.00067 2.3E-08 72.6 11.0 60 312-375 10-69 (287)
127 3trf_A Shikimate kinase, SK; a 97.3 0.00012 4E-09 72.1 4.2 32 339-370 5-36 (185)
128 2p5t_B PEZT; postsegregational 97.3 0.00048 1.6E-08 71.9 9.1 60 312-375 9-68 (253)
129 3sfz_A APAF-1, apoptotic pepti 97.3 0.0024 8.3E-08 79.9 17.1 172 301-517 119-321 (1249)
130 2rhm_A Putative kinase; P-loop 97.3 0.00017 5.8E-09 71.0 4.5 34 336-369 2-35 (193)
131 1u94_A RECA protein, recombina 97.3 0.00047 1.6E-08 76.2 8.5 78 335-412 59-155 (356)
132 1v5w_A DMC1, meiotic recombina 97.3 0.00048 1.6E-08 75.5 8.5 40 335-374 118-166 (343)
133 3vaa_A Shikimate kinase, SK; s 97.2 0.00017 5.8E-09 72.3 4.2 38 338-377 24-61 (199)
134 4a74_A DNA repair and recombin 97.2 0.00045 1.5E-08 69.7 7.3 29 335-363 21-49 (231)
135 2dr3_A UPF0273 protein PH0284; 97.2 0.0015 5.2E-08 66.5 11.3 39 335-373 19-60 (247)
136 2b8t_A Thymidine kinase; deoxy 97.2 0.00098 3.4E-08 69.0 9.8 71 340-410 13-101 (223)
137 2a5y_B CED-4; apoptosis; HET: 97.2 0.0062 2.1E-07 70.7 17.1 167 309-516 131-329 (549)
138 1g41_A Heat shock protein HSLU 97.2 0.0056 1.9E-07 69.5 16.0 147 400-552 252-433 (444)
139 3cmw_A Protein RECA, recombina 97.1 0.00033 1.1E-08 90.6 6.6 78 335-412 728-824 (1706)
140 3lda_A DNA repair protein RAD5 97.1 0.00086 2.9E-08 75.3 8.8 78 335-412 174-287 (400)
141 1zp6_A Hypothetical protein AT 97.1 0.00034 1.2E-08 69.0 4.8 40 336-375 6-45 (191)
142 3dm5_A SRP54, signal recogniti 97.1 0.0038 1.3E-07 70.8 13.8 175 338-529 99-307 (443)
143 2iyv_A Shikimate kinase, SK; t 97.0 0.00031 1.1E-08 69.0 3.9 30 340-369 3-32 (184)
144 3kb2_A SPBC2 prophage-derived 97.0 0.0004 1.4E-08 66.9 4.3 31 341-371 3-33 (173)
145 2i1q_A DNA repair and recombin 97.0 0.00084 2.9E-08 72.5 7.3 28 335-362 94-121 (322)
146 3iij_A Coilin-interacting nucl 97.0 0.00037 1.3E-08 68.3 4.0 33 338-370 10-42 (180)
147 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.0011 3.9E-08 69.4 8.0 39 339-377 4-45 (260)
148 1pzn_A RAD51, DNA repair and r 97.0 0.0013 4.6E-08 72.2 8.8 39 335-373 127-174 (349)
149 1via_A Shikimate kinase; struc 97.0 0.00034 1.2E-08 68.3 3.4 29 341-369 6-34 (175)
150 1y63_A LMAJ004144AAA protein; 97.0 0.0004 1.4E-08 68.8 3.9 32 339-370 10-42 (184)
151 1kag_A SKI, shikimate kinase I 97.0 0.00045 1.5E-08 66.9 4.1 36 339-376 4-39 (173)
152 2cdn_A Adenylate kinase; phosp 97.0 0.00053 1.8E-08 68.5 4.7 34 337-370 18-51 (201)
153 1nlf_A Regulatory protein REPA 96.9 0.0034 1.2E-07 66.2 11.1 26 338-363 29-54 (279)
154 3io5_A Recombination and repai 96.9 0.0015 5.2E-08 71.1 8.3 72 341-412 30-125 (333)
155 1qf9_A UMP/CMP kinase, protein 96.9 0.00052 1.8E-08 67.2 4.2 33 338-370 5-37 (194)
156 1zuh_A Shikimate kinase; alpha 96.9 0.0005 1.7E-08 66.6 4.0 31 340-370 8-38 (168)
157 1tev_A UMP-CMP kinase; ploop, 96.9 0.00048 1.6E-08 67.6 3.7 36 339-376 3-38 (196)
158 1g5t_A COB(I)alamin adenosyltr 96.9 0.0072 2.5E-07 61.3 12.2 116 341-476 30-178 (196)
159 2r6a_A DNAB helicase, replicat 96.9 0.0022 7.5E-08 72.8 9.5 38 335-372 199-240 (454)
160 1ly1_A Polynucleotide kinase; 96.8 0.00053 1.8E-08 66.5 3.5 30 339-368 2-32 (181)
161 2zts_A Putative uncharacterize 96.8 0.0028 9.5E-08 64.6 9.1 38 335-372 26-67 (251)
162 2c95_A Adenylate kinase 1; tra 96.8 0.0006 2.1E-08 67.2 3.9 32 339-370 9-40 (196)
163 3t61_A Gluconokinase; PSI-biol 96.8 0.00074 2.5E-08 67.5 4.5 31 339-369 18-48 (202)
164 2iut_A DNA translocase FTSK; n 96.8 0.011 3.9E-07 68.9 14.9 74 400-488 345-420 (574)
165 3e1s_A Exodeoxyribonuclease V, 96.8 0.0014 4.8E-08 76.9 7.4 71 340-410 205-291 (574)
166 3lw7_A Adenylate kinase relate 96.8 0.00057 1.9E-08 65.4 3.3 29 341-370 3-31 (179)
167 1aky_A Adenylate kinase; ATP:A 96.8 0.00066 2.2E-08 68.9 3.9 33 338-370 3-35 (220)
168 2ze6_A Isopentenyl transferase 96.8 0.00075 2.5E-08 70.7 4.3 32 341-372 3-34 (253)
169 2pez_A Bifunctional 3'-phospho 96.8 0.0011 3.6E-08 65.0 5.1 38 338-375 4-44 (179)
170 2q6t_A DNAB replication FORK h 96.8 0.0029 9.8E-08 71.7 9.3 38 335-372 196-237 (444)
171 2vli_A Antibiotic resistance p 96.8 0.00064 2.2E-08 66.3 3.4 30 339-368 5-34 (183)
172 1zd8_A GTP:AMP phosphotransfer 96.8 0.00069 2.3E-08 69.2 3.7 33 338-370 6-38 (227)
173 1vma_A Cell division protein F 96.8 0.013 4.5E-07 63.3 13.9 73 336-408 101-196 (306)
174 1e6c_A Shikimate kinase; phosp 96.8 0.00074 2.5E-08 65.3 3.7 30 340-369 3-32 (173)
175 2bwj_A Adenylate kinase 5; pho 96.7 0.00072 2.5E-08 66.8 3.6 32 339-370 12-43 (199)
176 1cr0_A DNA primase/helicase; R 96.7 0.0024 8.3E-08 67.8 7.8 37 335-371 31-71 (296)
177 3cm0_A Adenylate kinase; ATP-b 96.7 0.00077 2.6E-08 66.0 3.6 31 339-369 4-34 (186)
178 3be4_A Adenylate kinase; malar 96.7 0.00074 2.5E-08 68.6 3.5 32 339-370 5-36 (217)
179 1kht_A Adenylate kinase; phosp 96.7 0.00069 2.4E-08 66.3 3.1 26 339-364 3-28 (192)
180 3dl0_A Adenylate kinase; phosp 96.7 0.00088 3E-08 67.6 3.9 30 341-370 2-31 (216)
181 3umf_A Adenylate kinase; rossm 96.7 0.001 3.4E-08 68.6 4.2 39 336-376 26-64 (217)
182 1ukz_A Uridylate kinase; trans 96.7 0.00099 3.4E-08 66.4 4.0 32 339-370 15-46 (203)
183 1zak_A Adenylate kinase; ATP:A 96.7 0.00071 2.4E-08 68.7 3.0 32 338-369 4-35 (222)
184 3tlx_A Adenylate kinase 2; str 96.7 0.00096 3.3E-08 69.3 4.0 33 338-370 28-60 (243)
185 2fz4_A DNA repair protein RAD2 96.7 0.0057 2E-07 63.2 9.9 36 341-376 110-146 (237)
186 3fb4_A Adenylate kinase; psych 96.6 0.00096 3.3E-08 67.2 3.8 30 341-370 2-31 (216)
187 2ius_A DNA translocase FTSK; n 96.6 0.012 4.2E-07 67.9 13.4 75 399-488 297-374 (512)
188 1ak2_A Adenylate kinase isoenz 96.6 0.0011 3.7E-08 68.1 4.0 32 339-370 16-47 (233)
189 2pt5_A Shikimate kinase, SK; a 96.6 0.0011 3.7E-08 63.9 3.7 29 341-369 2-30 (168)
190 1knq_A Gluconate kinase; ALFA/ 96.6 0.0014 4.7E-08 63.8 4.2 31 339-369 8-38 (175)
191 1ex7_A Guanylate kinase; subst 96.6 0.0018 6.2E-08 65.1 5.2 24 340-363 2-25 (186)
192 4eun_A Thermoresistant glucoki 96.6 0.0015 5E-08 65.5 4.4 36 338-375 28-63 (200)
193 2i3b_A HCR-ntpase, human cance 96.5 0.0049 1.7E-07 61.9 8.1 23 341-363 3-25 (189)
194 3bh0_A DNAB-like replicative h 96.5 0.0081 2.8E-07 64.9 10.3 38 335-372 64-104 (315)
195 3jvv_A Twitching mobility prot 96.5 0.0019 6.7E-08 71.3 5.1 68 341-408 125-206 (356)
196 1nks_A Adenylate kinase; therm 96.5 0.0017 5.7E-08 63.5 4.0 35 341-375 3-40 (194)
197 2eyu_A Twitching motility prot 96.5 0.0015 5.1E-08 69.0 3.9 70 339-408 25-108 (261)
198 3uie_A Adenylyl-sulfate kinase 96.5 0.0025 8.7E-08 63.7 5.4 38 338-375 24-64 (200)
199 2ga8_A Hypothetical 39.9 kDa p 96.4 0.00085 2.9E-08 74.0 1.8 31 340-370 25-55 (359)
200 3crm_A TRNA delta(2)-isopenten 96.4 0.0018 6.3E-08 70.5 4.2 35 339-373 5-39 (323)
201 1jjv_A Dephospho-COA kinase; P 96.4 0.0028 9.5E-08 63.4 5.3 33 340-375 3-35 (206)
202 3ney_A 55 kDa erythrocyte memb 96.4 0.0028 9.6E-08 64.3 5.3 26 338-363 18-43 (197)
203 1e4v_A Adenylate kinase; trans 96.4 0.0018 6.1E-08 65.5 3.7 30 341-370 2-31 (214)
204 1cke_A CK, MSSA, protein (cyti 96.4 0.0021 7.3E-08 64.9 4.3 30 340-369 6-35 (227)
205 2grj_A Dephospho-COA kinase; T 96.3 0.0039 1.3E-07 62.8 6.0 39 341-381 14-52 (192)
206 2ewv_A Twitching motility prot 96.3 0.0031 1.1E-07 70.0 5.7 72 337-408 134-219 (372)
207 2pbr_A DTMP kinase, thymidylat 96.3 0.0027 9.1E-08 62.2 4.6 31 341-371 2-35 (195)
208 3kl4_A SRP54, signal recogniti 96.3 0.024 8.3E-07 64.1 13.0 198 338-553 96-341 (433)
209 3sr0_A Adenylate kinase; phosp 96.3 0.0022 7.6E-08 65.4 4.0 34 341-376 2-35 (206)
210 2v54_A DTMP kinase, thymidylat 96.3 0.0027 9.2E-08 63.0 4.5 33 339-371 4-37 (204)
211 1m7g_A Adenylylsulfate kinase; 96.3 0.0068 2.3E-07 61.0 7.5 39 338-376 24-66 (211)
212 2if2_A Dephospho-COA kinase; a 96.3 0.002 6.7E-08 64.3 3.3 29 341-370 3-31 (204)
213 2bbw_A Adenylate kinase 4, AK4 96.3 0.0028 9.5E-08 65.5 4.6 31 339-369 27-57 (246)
214 2jaq_A Deoxyguanosine kinase; 96.2 0.0024 8.2E-08 63.1 3.7 30 341-370 2-31 (205)
215 3ake_A Cytidylate kinase; CMP 96.2 0.0033 1.1E-07 62.4 4.6 30 341-370 4-33 (208)
216 1uf9_A TT1252 protein; P-loop, 96.2 0.003 1E-07 62.5 4.1 36 339-377 8-43 (203)
217 2wwf_A Thymidilate kinase, put 96.2 0.0018 6.3E-08 64.6 2.5 31 338-368 9-39 (212)
218 2z0h_A DTMP kinase, thymidylat 96.1 0.0038 1.3E-07 61.4 4.5 30 342-371 3-35 (197)
219 2xb4_A Adenylate kinase; ATP-b 96.1 0.0032 1.1E-07 64.3 3.9 29 341-369 2-30 (223)
220 1uj2_A Uridine-cytidine kinase 96.1 0.0047 1.6E-07 64.2 5.1 39 338-376 21-67 (252)
221 1nn5_A Similar to deoxythymidy 96.0 0.0023 7.8E-08 63.9 2.3 29 338-366 8-36 (215)
222 3r20_A Cytidylate kinase; stru 96.0 0.0041 1.4E-07 64.8 4.3 31 339-369 9-39 (233)
223 2qor_A Guanylate kinase; phosp 96.0 0.0062 2.1E-07 61.0 5.4 28 337-364 10-37 (204)
224 3tau_A Guanylate kinase, GMP k 95.9 0.0063 2.2E-07 61.4 5.2 26 339-364 8-33 (208)
225 2plr_A DTMP kinase, probable t 95.9 0.0043 1.5E-07 61.6 3.9 28 339-366 4-31 (213)
226 1w4r_A Thymidine kinase; type 95.9 0.038 1.3E-06 55.9 10.7 70 339-410 20-103 (195)
227 4gp7_A Metallophosphoesterase; 95.9 0.0049 1.7E-07 60.3 4.1 21 338-358 8-28 (171)
228 2yvu_A Probable adenylyl-sulfa 95.9 0.008 2.7E-07 59.0 5.6 37 338-374 12-51 (186)
229 2pt7_A CAG-ALFA; ATPase, prote 95.9 0.003 1E-07 68.9 2.7 70 340-409 172-251 (330)
230 3nwj_A ATSK2; P loop, shikimat 95.9 0.0045 1.5E-07 65.0 3.9 31 340-370 49-79 (250)
231 1kgd_A CASK, peripheral plasma 95.8 0.0083 2.8E-07 59.0 5.5 26 339-364 5-30 (180)
232 1ltq_A Polynucleotide kinase; 95.8 0.0039 1.3E-07 66.1 3.0 30 339-368 2-32 (301)
233 1tf7_A KAIC; homohexamer, hexa 95.8 0.038 1.3E-06 63.8 11.6 96 335-437 277-403 (525)
234 3a8t_A Adenylate isopentenyltr 95.8 0.0044 1.5E-07 68.0 3.4 35 339-373 40-74 (339)
235 2h92_A Cytidylate kinase; ross 95.8 0.0051 1.8E-07 61.9 3.7 32 339-370 3-34 (219)
236 3c8u_A Fructokinase; YP_612366 95.8 0.0064 2.2E-07 61.2 4.4 27 338-364 21-47 (208)
237 1w36_D RECD, exodeoxyribonucle 95.7 0.024 8.3E-07 66.8 9.9 23 340-362 165-187 (608)
238 2qt1_A Nicotinamide riboside k 95.7 0.0047 1.6E-07 61.8 3.2 31 339-369 21-52 (207)
239 2lna_A AFG3-like protein 2; st 95.7 0.01 3.6E-07 53.6 5.1 76 134-225 14-90 (99)
240 1q57_A DNA primase/helicase; d 95.7 0.027 9.1E-07 64.6 9.8 38 335-372 238-279 (503)
241 1vht_A Dephospho-COA kinase; s 95.7 0.0071 2.4E-07 61.0 4.4 30 339-369 4-33 (218)
242 3b6e_A Interferon-induced heli 95.7 0.028 9.7E-07 55.6 8.7 24 340-363 49-72 (216)
243 2gxq_A Heat resistant RNA depe 95.7 0.04 1.4E-06 54.4 9.8 19 340-358 39-57 (207)
244 4a1f_A DNAB helicase, replicat 95.7 0.022 7.5E-07 62.4 8.4 38 335-372 42-82 (338)
245 1q3t_A Cytidylate kinase; nucl 95.6 0.0077 2.6E-07 61.8 4.6 33 337-369 14-46 (236)
246 3foz_A TRNA delta(2)-isopenten 95.6 0.0064 2.2E-07 65.9 4.1 36 338-373 9-44 (316)
247 4e22_A Cytidylate kinase; P-lo 95.6 0.0079 2.7E-07 62.7 4.4 29 340-368 28-56 (252)
248 2axn_A 6-phosphofructo-2-kinas 95.6 0.023 7.9E-07 65.8 8.6 41 339-379 35-78 (520)
249 4g1u_C Hemin import ATP-bindin 95.5 0.028 9.4E-07 59.4 8.4 25 339-363 37-61 (266)
250 1tf7_A KAIC; homohexamer, hexa 95.5 0.049 1.7E-06 62.9 11.2 113 336-459 36-188 (525)
251 2j41_A Guanylate kinase; GMP, 95.5 0.0075 2.6E-07 59.7 3.7 26 338-363 5-30 (207)
252 1rz3_A Hypothetical protein rb 95.5 0.025 8.6E-07 56.5 7.6 37 338-374 21-60 (201)
253 3bgw_A DNAB-like replicative h 95.5 0.026 8.8E-07 64.1 8.5 38 335-372 193-233 (444)
254 2f6r_A COA synthase, bifunctio 95.5 0.0071 2.4E-07 64.3 3.6 35 339-376 75-109 (281)
255 3zvl_A Bifunctional polynucleo 95.5 0.012 4.1E-07 66.1 5.6 32 338-369 257-288 (416)
256 2px0_A Flagellar biosynthesis 95.4 0.03 1E-06 60.1 8.2 36 338-373 104-143 (296)
257 1x6v_B Bifunctional 3'-phospho 95.4 0.025 8.7E-07 66.8 8.2 38 338-375 51-91 (630)
258 2bdt_A BH3686; alpha-beta prot 95.3 0.013 4.3E-07 57.7 4.6 35 341-376 4-38 (189)
259 3d3q_A TRNA delta(2)-isopenten 95.2 0.011 3.7E-07 64.9 4.0 34 339-372 7-40 (340)
260 1lvg_A Guanylate kinase, GMP k 95.2 0.015 5.2E-07 58.2 4.7 25 339-363 4-28 (198)
261 3fdi_A Uncharacterized protein 95.1 0.013 4.3E-07 59.3 4.1 29 341-369 8-36 (201)
262 3exa_A TRNA delta(2)-isopenten 95.1 0.011 3.8E-07 64.2 3.8 34 339-372 3-36 (322)
263 3asz_A Uridine kinase; cytidin 95.1 0.011 3.8E-07 59.1 3.4 30 339-368 6-37 (211)
264 1t6n_A Probable ATP-dependent 95.0 0.33 1.1E-05 48.4 14.3 59 302-362 13-74 (220)
265 2qmh_A HPR kinase/phosphorylas 95.0 0.011 3.7E-07 60.2 3.0 32 339-371 34-65 (205)
266 1hv8_A Putative ATP-dependent 94.9 0.14 4.7E-06 54.6 11.8 59 302-362 5-67 (367)
267 3tr0_A Guanylate kinase, GMP k 94.9 0.015 5E-07 57.6 3.8 25 339-363 7-31 (205)
268 2oap_1 GSPE-2, type II secreti 94.9 0.014 4.6E-07 67.6 3.9 70 339-408 260-343 (511)
269 3a00_A Guanylate kinase, GMP k 94.9 0.014 4.8E-07 57.6 3.6 25 340-364 2-26 (186)
270 1xx6_A Thymidine kinase; NESG, 94.9 0.11 3.7E-06 52.3 10.0 70 340-410 9-93 (191)
271 3thx_B DNA mismatch repair pro 94.9 0.071 2.4E-06 65.7 10.3 24 338-361 672-695 (918)
272 1vt4_I APAF-1 related killer D 94.8 0.05 1.7E-06 67.6 8.6 43 309-362 131-173 (1221)
273 1odf_A YGR205W, hypothetical 3 94.8 0.019 6.3E-07 61.6 4.3 29 336-364 28-56 (290)
274 1p9r_A General secretion pathw 94.7 0.071 2.4E-06 60.0 9.1 93 302-407 143-245 (418)
275 3lnc_A Guanylate kinase, GMP k 94.6 0.017 5.9E-07 58.8 3.6 26 338-363 26-52 (231)
276 3eph_A TRNA isopentenyltransfe 94.6 0.018 6.1E-07 64.6 3.8 34 339-372 2-35 (409)
277 2yhs_A FTSY, cell division pro 94.6 0.078 2.7E-06 60.9 9.1 28 336-363 290-317 (503)
278 3llm_A ATP-dependent RNA helic 94.6 0.12 4.2E-06 52.7 9.8 21 340-360 77-97 (235)
279 2pl3_A Probable ATP-dependent 94.6 0.099 3.4E-06 53.0 9.1 54 302-357 24-80 (236)
280 1q0u_A Bstdead; DEAD protein, 94.6 0.12 4E-06 51.9 9.5 19 340-358 42-60 (219)
281 1ls1_A Signal recognition part 94.5 0.27 9.2E-06 52.5 12.7 35 338-372 97-134 (295)
282 1vec_A ATP-dependent RNA helic 94.5 0.14 4.7E-06 50.5 9.6 18 340-357 41-58 (206)
283 1zu4_A FTSY; GTPase, signal re 94.5 0.071 2.4E-06 57.9 8.1 37 336-372 102-141 (320)
284 3tui_C Methionine import ATP-b 94.4 0.075 2.6E-06 58.8 8.2 25 339-363 54-78 (366)
285 3iuy_A Probable ATP-dependent 94.2 0.06 2E-06 54.3 6.5 56 300-357 16-75 (228)
286 1z6g_A Guanylate kinase; struc 94.2 0.024 8.2E-07 57.7 3.6 26 338-363 22-47 (218)
287 3gmt_A Adenylate kinase; ssgci 94.2 0.026 8.9E-07 58.6 3.6 30 341-370 10-39 (230)
288 3thx_A DNA mismatch repair pro 94.1 0.13 4.4E-06 63.6 10.3 23 339-361 662-684 (934)
289 2xxa_A Signal recognition part 94.1 0.12 4.1E-06 58.4 9.4 71 337-407 98-192 (433)
290 2v3c_C SRP54, signal recogniti 94.1 0.039 1.3E-06 62.4 5.3 36 338-373 98-136 (432)
291 3b9q_A Chloroplast SRP recepto 94.1 0.056 1.9E-06 58.2 6.3 28 336-363 97-124 (302)
292 2j37_W Signal recognition part 94.1 0.061 2.1E-06 62.0 6.9 36 337-372 99-137 (504)
293 2jeo_A Uridine-cytidine kinase 94.1 0.03 1E-06 57.8 3.9 28 339-366 25-52 (245)
294 1htw_A HI0065; nucleotide-bind 94.0 0.035 1.2E-06 54.0 4.1 27 337-363 31-57 (158)
295 3e70_C DPA, signal recognition 94.0 0.094 3.2E-06 57.1 7.9 27 337-363 127-153 (328)
296 1xti_A Probable ATP-dependent 94.0 0.23 8E-06 53.6 11.1 57 303-361 8-67 (391)
297 1znw_A Guanylate kinase, GMP k 94.0 0.031 1.1E-06 56.1 3.7 26 339-364 20-45 (207)
298 1bif_A 6-phosphofructo-2-kinas 94.0 0.11 3.8E-06 59.0 8.8 38 339-376 39-79 (469)
299 4b3f_X DNA-binding protein smu 94.0 0.069 2.3E-06 63.2 7.3 59 302-374 182-243 (646)
300 3hdt_A Putative kinase; struct 94.0 0.03 1E-06 57.7 3.6 30 340-369 15-44 (223)
301 3p32_A Probable GTPase RV1496/ 94.0 0.22 7.5E-06 54.5 10.8 33 339-371 79-114 (355)
302 2j9r_A Thymidine kinase; TK1, 93.9 0.13 4.4E-06 52.8 8.3 69 341-410 30-113 (214)
303 1gtv_A TMK, thymidylate kinase 93.9 0.014 4.9E-07 58.1 1.1 24 341-364 2-25 (214)
304 3fe2_A Probable ATP-dependent 93.8 0.16 5.3E-06 51.9 8.6 55 301-357 27-84 (242)
305 1wb9_A DNA mismatch repair pro 93.7 0.21 7.2E-06 60.7 11.0 24 339-362 607-630 (800)
306 3pey_A ATP-dependent RNA helic 93.7 0.38 1.3E-05 51.7 12.0 21 339-359 44-64 (395)
307 2v9p_A Replication protein E1; 93.7 0.039 1.3E-06 59.6 4.0 29 335-363 122-150 (305)
308 1a7j_A Phosphoribulokinase; tr 93.7 0.026 9E-07 60.3 2.7 38 339-376 5-45 (290)
309 1c9k_A COBU, adenosylcobinamid 93.6 0.039 1.3E-06 55.2 3.6 31 342-373 2-32 (180)
310 1s2m_A Putative ATP-dependent 93.6 0.2 6.8E-06 54.5 9.6 58 301-360 19-79 (400)
311 1m8p_A Sulfate adenylyltransfe 93.6 0.044 1.5E-06 64.2 4.5 38 338-375 395-436 (573)
312 1sky_E F1-ATPase, F1-ATP synth 93.6 0.18 6.1E-06 57.6 9.3 24 340-363 152-175 (473)
313 2gza_A Type IV secretion syste 93.5 0.082 2.8E-06 58.2 6.4 70 339-408 175-262 (361)
314 4eaq_A DTMP kinase, thymidylat 93.5 0.046 1.6E-06 56.2 4.0 32 339-370 26-59 (229)
315 2og2_A Putative signal recogni 93.5 0.075 2.6E-06 58.7 5.9 29 335-363 153-181 (359)
316 1j8m_F SRP54, signal recogniti 93.3 0.1 3.6E-06 55.9 6.7 71 339-409 98-191 (297)
317 1s96_A Guanylate kinase, GMP k 93.3 0.048 1.6E-06 55.9 3.8 27 338-364 15-41 (219)
318 1sq5_A Pantothenate kinase; P- 93.2 0.049 1.7E-06 58.5 3.9 27 338-364 79-105 (308)
319 3qf4_B Uncharacterized ABC tra 93.2 0.32 1.1E-05 57.0 11.1 28 336-363 378-405 (598)
320 4a82_A Cystic fibrosis transme 93.1 0.26 9E-06 57.5 10.1 27 337-363 365-391 (578)
321 3tqf_A HPR(Ser) kinase; transf 93.1 0.062 2.1E-06 53.6 4.0 29 339-368 16-44 (181)
322 2j0s_A ATP-dependent RNA helic 93.0 0.21 7.1E-06 54.6 8.7 58 301-360 35-95 (410)
323 3tqc_A Pantothenate kinase; bi 93.0 0.097 3.3E-06 56.9 5.8 27 338-364 91-117 (321)
324 3ber_A Probable ATP-dependent 93.0 0.25 8.7E-06 50.9 8.8 54 302-357 42-98 (249)
325 2ffh_A Protein (FFH); SRP54, s 92.9 0.32 1.1E-05 54.8 10.2 35 338-372 97-134 (425)
326 4i1u_A Dephospho-COA kinase; s 92.8 0.11 3.7E-06 53.2 5.5 30 340-370 10-39 (210)
327 3qf4_A ABC transporter, ATP-bi 92.7 0.35 1.2E-05 56.6 10.6 28 336-363 366-393 (587)
328 3vkw_A Replicase large subunit 92.7 0.24 8.3E-06 56.1 8.7 24 339-362 161-184 (446)
329 2ocp_A DGK, deoxyguanosine kin 92.7 0.069 2.4E-06 54.7 3.9 26 339-364 2-27 (241)
330 2zj8_A DNA helicase, putative 92.7 0.26 9E-06 58.8 9.6 19 339-357 39-57 (720)
331 3aez_A Pantothenate kinase; tr 92.6 0.069 2.4E-06 57.7 4.0 27 337-363 88-114 (312)
332 3e2i_A Thymidine kinase; Zn-bi 92.6 0.24 8.3E-06 50.9 7.8 69 341-410 30-113 (219)
333 3cr8_A Sulfate adenylyltranfer 92.6 0.063 2.1E-06 62.6 3.8 40 338-377 368-411 (552)
334 1np6_A Molybdopterin-guanine d 92.5 0.073 2.5E-06 52.7 3.7 26 338-363 5-30 (174)
335 2ged_A SR-beta, signal recogni 92.5 0.12 3.9E-06 50.3 5.1 47 311-363 26-72 (193)
336 3fmo_B ATP-dependent RNA helic 92.5 0.6 2.1E-05 49.7 11.1 54 301-356 90-148 (300)
337 2gks_A Bifunctional SAT/APS ki 92.5 0.2 7E-06 58.2 8.0 38 339-376 372-412 (546)
338 1p5z_B DCK, deoxycytidine kina 92.4 0.035 1.2E-06 57.8 1.3 31 338-368 23-54 (263)
339 4f4c_A Multidrug resistance pr 92.4 0.42 1.4E-05 61.3 11.5 29 336-364 441-469 (1321)
340 2xau_A PRE-mRNA-splicing facto 92.4 0.18 6.3E-06 61.0 7.7 59 301-362 70-132 (773)
341 3dz8_A RAS-related protein RAB 92.3 0.4 1.4E-05 46.5 8.7 24 340-363 24-47 (191)
342 1rj9_A FTSY, signal recognitio 92.2 0.088 3E-06 56.7 4.1 26 338-363 101-126 (304)
343 2qm8_A GTPase/ATPase; G protei 92.0 0.24 8.3E-06 53.9 7.4 25 339-363 55-79 (337)
344 2va8_A SSO2462, SKI2-type heli 91.9 0.45 1.5E-05 56.6 10.2 56 302-359 7-66 (715)
345 1wp9_A ATP-dependent RNA helic 91.8 1 3.5E-05 49.2 12.4 33 341-373 25-61 (494)
346 3tif_A Uncharacterized ABC tra 91.8 0.057 2E-06 55.8 2.1 25 339-363 31-55 (235)
347 2i4i_A ATP-dependent RNA helic 91.8 0.37 1.3E-05 52.5 8.7 53 302-356 14-69 (417)
348 3h1t_A Type I site-specific re 91.8 0.29 1E-05 56.8 8.3 46 308-363 177-222 (590)
349 2cbz_A Multidrug resistance-as 91.8 0.058 2E-06 55.9 2.1 26 338-363 30-55 (237)
350 1g8f_A Sulfate adenylyltransfe 91.8 0.098 3.4E-06 60.4 4.2 27 339-365 395-421 (511)
351 2fwr_A DNA repair protein RAD2 91.7 0.29 9.8E-06 54.9 7.9 36 341-376 110-146 (472)
352 3kta_A Chromosome segregation 91.7 0.11 3.6E-06 50.5 3.7 24 341-364 28-51 (182)
353 2orv_A Thymidine kinase; TP4A 91.6 1.1 3.6E-05 46.6 11.3 68 340-410 20-102 (234)
354 2pcj_A ABC transporter, lipopr 91.6 0.054 1.8E-06 55.6 1.5 25 339-363 30-54 (224)
355 1xjc_A MOBB protein homolog; s 91.5 0.11 3.7E-06 51.3 3.6 33 339-371 4-39 (169)
356 2onk_A Molybdate/tungstate ABC 91.5 0.073 2.5E-06 55.3 2.4 24 340-363 25-48 (240)
357 4a2p_A RIG-I, retinoic acid in 91.5 0.68 2.3E-05 52.5 10.7 24 340-363 23-46 (556)
358 3b85_A Phosphate starvation-in 91.5 0.069 2.4E-06 54.3 2.2 23 340-362 23-45 (208)
359 1wrb_A DJVLGB; RNA helicase, D 91.4 0.45 1.5E-05 48.6 8.4 18 340-357 61-78 (253)
360 3tbk_A RIG-I helicase domain; 91.4 1.6 5.5E-05 49.2 13.7 34 340-373 20-61 (555)
361 1b0u_A Histidine permease; ABC 91.2 0.071 2.4E-06 56.1 2.0 25 339-363 32-56 (262)
362 3i5x_A ATP-dependent RNA helic 91.2 0.8 2.7E-05 52.6 11.0 18 339-356 111-128 (563)
363 1mv5_A LMRA, multidrug resista 91.1 0.072 2.5E-06 55.2 1.9 26 338-363 27-52 (243)
364 3lxw_A GTPase IMAP family memb 91.1 0.43 1.5E-05 49.3 7.8 24 339-362 21-44 (247)
365 1lw7_A Transcriptional regulat 91.1 0.11 3.9E-06 56.8 3.6 28 339-366 170-197 (365)
366 2f9l_A RAB11B, member RAS onco 91.0 0.12 4E-06 50.9 3.2 23 341-363 7-29 (199)
367 1ewq_A DNA mismatch repair pro 91.0 0.48 1.7E-05 57.3 9.2 24 339-362 576-599 (765)
368 1oix_A RAS-related protein RAB 91.0 0.11 3.9E-06 50.9 3.1 23 341-363 31-53 (191)
369 4edh_A DTMP kinase, thymidylat 90.9 0.19 6.6E-06 51.1 4.9 32 339-370 6-40 (213)
370 3fmp_B ATP-dependent RNA helic 90.9 1.1 3.7E-05 50.4 11.6 54 302-357 91-149 (479)
371 2wsm_A Hydrogenase expression/ 90.9 0.18 6.3E-06 50.2 4.7 26 339-364 30-55 (221)
372 1g6h_A High-affinity branched- 90.9 0.075 2.6E-06 55.6 1.8 25 339-363 33-57 (257)
373 2ghi_A Transport protein; mult 90.8 0.082 2.8E-06 55.5 2.1 26 338-363 45-70 (260)
374 2zu0_C Probable ATP-dependent 90.8 0.095 3.2E-06 55.3 2.5 24 339-362 46-69 (267)
375 2o8b_B DNA mismatch repair pro 90.8 0.81 2.8E-05 57.1 11.2 22 339-360 789-810 (1022)
376 3fvq_A Fe(3+) IONS import ATP- 90.8 0.092 3.1E-06 58.0 2.5 24 340-363 31-54 (359)
377 2d2e_A SUFC protein; ABC-ATPas 90.8 0.088 3E-06 54.9 2.2 24 339-362 29-52 (250)
378 2ixe_A Antigen peptide transpo 90.7 0.084 2.9E-06 55.8 2.1 26 338-363 44-69 (271)
379 2olj_A Amino acid ABC transpor 90.7 0.084 2.9E-06 55.7 2.0 25 339-363 50-74 (263)
380 3fht_A ATP-dependent RNA helic 90.7 2.5 8.5E-05 45.6 13.9 55 301-357 23-82 (412)
381 1sgw_A Putative ABC transporte 90.7 0.09 3.1E-06 53.7 2.2 25 339-363 35-59 (214)
382 2f1r_A Molybdopterin-guanine d 90.7 0.098 3.3E-06 51.6 2.3 25 340-364 3-27 (171)
383 2pze_A Cystic fibrosis transme 90.6 0.078 2.7E-06 54.5 1.7 25 339-363 34-58 (229)
384 2ff7_A Alpha-hemolysin translo 90.6 0.079 2.7E-06 55.2 1.7 25 339-363 35-59 (247)
385 3eiq_A Eukaryotic initiation f 90.6 0.39 1.3E-05 52.3 7.3 57 301-359 38-97 (414)
386 2p67_A LAO/AO transport system 90.6 0.46 1.6E-05 51.6 7.8 25 339-363 56-80 (341)
387 3ly5_A ATP-dependent RNA helic 90.5 0.48 1.6E-05 49.2 7.6 19 340-358 92-110 (262)
388 1ji0_A ABC transporter; ATP bi 90.5 0.081 2.8E-06 54.8 1.7 25 339-363 32-56 (240)
389 3sop_A Neuronal-specific septi 90.5 0.13 4.5E-06 54.3 3.3 23 341-363 4-26 (270)
390 3gfo_A Cobalt import ATP-bindi 90.5 0.081 2.8E-06 56.2 1.7 25 339-363 34-58 (275)
391 2yz2_A Putative ABC transporte 90.3 0.096 3.3E-06 55.1 2.1 25 339-363 33-57 (266)
392 1vpl_A ABC transporter, ATP-bi 90.3 0.096 3.3E-06 55.0 2.0 25 339-363 41-65 (256)
393 2yyz_A Sugar ABC transporter, 90.2 0.11 3.9E-06 57.2 2.6 25 339-363 29-53 (359)
394 2dyk_A GTP-binding protein; GT 90.2 0.16 5.6E-06 47.2 3.4 23 341-363 3-25 (161)
395 3v9p_A DTMP kinase, thymidylat 90.2 0.2 6.9E-06 51.7 4.3 32 339-370 25-63 (227)
396 2qi9_C Vitamin B12 import ATP- 90.2 0.09 3.1E-06 54.9 1.7 26 339-364 26-51 (249)
397 3tmk_A Thymidylate kinase; pho 90.1 0.27 9.2E-06 50.3 5.1 29 339-367 5-33 (216)
398 2it1_A 362AA long hypothetical 90.1 0.12 3.9E-06 57.2 2.5 24 340-363 30-53 (362)
399 3d31_A Sulfate/molybdate ABC t 90.1 0.1 3.4E-06 57.4 2.1 25 339-363 26-50 (348)
400 3rlf_A Maltose/maltodextrin im 90.1 0.12 4E-06 57.6 2.5 24 340-363 30-53 (381)
401 1nrj_B SR-beta, signal recogni 90.1 0.19 6.4E-06 49.9 3.9 25 339-363 12-36 (218)
402 1v43_A Sugar-binding transport 90.0 0.12 4.1E-06 57.3 2.5 25 339-363 37-61 (372)
403 1z2a_A RAS-related protein RAB 90.0 0.16 5.5E-06 47.5 3.1 23 340-362 6-28 (168)
404 1z47_A CYSA, putative ABC-tran 90.0 0.11 3.8E-06 57.3 2.2 25 339-363 41-65 (355)
405 2ihy_A ABC transporter, ATP-bi 89.9 0.097 3.3E-06 55.6 1.7 25 339-363 47-71 (279)
406 2gk6_A Regulator of nonsense t 89.9 0.14 4.8E-06 60.4 3.2 33 341-373 197-233 (624)
407 2nq2_C Hypothetical ABC transp 89.9 0.099 3.4E-06 54.7 1.7 25 339-363 31-55 (253)
408 2ce2_X GTPase HRAS; signaling 89.8 0.17 5.9E-06 46.9 3.2 23 341-363 5-27 (166)
409 3sqw_A ATP-dependent RNA helic 89.7 1.1 3.7E-05 52.0 10.4 19 339-357 60-78 (579)
410 1kao_A RAP2A; GTP-binding prot 89.7 0.18 6.3E-06 46.9 3.2 24 340-363 4-27 (167)
411 1oyw_A RECQ helicase, ATP-depe 89.6 0.58 2E-05 53.9 8.0 22 340-361 41-62 (523)
412 1g29_1 MALK, maltose transport 89.6 0.12 4.2E-06 57.2 2.2 25 339-363 29-53 (372)
413 2wji_A Ferrous iron transport 89.5 0.15 5.1E-06 48.5 2.5 22 341-362 5-26 (165)
414 3ux8_A Excinuclease ABC, A sub 89.5 0.59 2E-05 55.4 8.2 21 339-359 348-368 (670)
415 2ykg_A Probable ATP-dependent 89.4 1.2 4.2E-05 52.4 10.8 22 340-361 29-50 (696)
416 1oxx_K GLCV, glucose, ABC tran 89.4 0.1 3.6E-06 57.3 1.5 25 339-363 31-55 (353)
417 3lv8_A DTMP kinase, thymidylat 89.4 0.21 7.1E-06 51.9 3.7 28 339-366 27-57 (236)
418 2zej_A Dardarin, leucine-rich 89.4 0.13 4.3E-06 50.0 1.9 21 341-361 4-24 (184)
419 1u8z_A RAS-related protein RAL 89.4 0.2 6.8E-06 46.7 3.2 23 340-362 5-27 (168)
420 2f7s_A C25KG, RAS-related prot 89.4 1.2 4E-05 44.0 9.1 23 340-362 26-48 (217)
421 2www_A Methylmalonic aciduria 89.4 0.56 1.9E-05 51.2 7.3 25 339-363 74-98 (349)
422 1ek0_A Protein (GTP-binding pr 89.3 0.2 6.9E-06 46.8 3.2 24 340-363 4-27 (170)
423 2p6r_A Afuhel308 helicase; pro 89.3 0.65 2.2E-05 55.2 8.3 33 340-372 41-76 (702)
424 3gd7_A Fusion complex of cysti 89.2 0.15 5E-06 57.0 2.5 26 338-363 46-71 (390)
425 4f4c_A Multidrug resistance pr 89.2 0.36 1.2E-05 61.9 6.4 24 340-363 1106-1129(1321)
426 2pjz_A Hypothetical protein ST 89.1 0.14 4.8E-06 53.9 2.2 25 339-363 30-54 (263)
427 1z0j_A RAB-22, RAS-related pro 89.1 0.21 7.2E-06 46.8 3.2 24 340-363 7-30 (170)
428 1g16_A RAS-related protein SEC 89.0 0.21 7.2E-06 46.8 3.2 23 340-362 4-26 (170)
429 1gm5_A RECG; helicase, replica 89.0 0.82 2.8E-05 55.4 9.0 35 338-372 388-425 (780)
430 1svi_A GTP-binding protein YSX 89.0 0.14 4.9E-06 49.6 2.0 24 339-362 23-46 (195)
431 2hf9_A Probable hydrogenase ni 89.0 0.39 1.3E-05 47.9 5.3 25 339-363 38-62 (226)
432 1wms_A RAB-9, RAB9, RAS-relate 88.9 0.22 7.5E-06 47.2 3.2 23 340-362 8-30 (177)
433 3ch4_B Pmkase, phosphomevalona 88.9 0.43 1.5E-05 48.5 5.5 42 335-376 7-49 (202)
434 1z08_A RAS-related protein RAB 88.9 0.22 7.6E-06 46.7 3.2 23 340-362 7-29 (170)
435 2db3_A ATP-dependent RNA helic 88.8 1.1 3.7E-05 50.0 9.3 54 301-356 54-110 (434)
436 2nzj_A GTP-binding protein REM 88.8 0.21 7.3E-06 47.1 3.0 23 340-362 5-27 (175)
437 1upt_A ARL1, ADP-ribosylation 88.8 0.29 1E-05 46.0 4.0 24 339-362 7-30 (171)
438 1ky3_A GTP-binding protein YPT 88.8 0.23 7.8E-06 47.1 3.2 25 339-363 8-32 (182)
439 2bbs_A Cystic fibrosis transme 88.8 0.14 4.9E-06 54.7 2.0 25 339-363 64-88 (290)
440 1r2q_A RAS-related protein RAB 88.7 0.24 8.1E-06 46.4 3.2 23 340-362 7-29 (170)
441 2wjg_A FEOB, ferrous iron tran 88.7 0.2 6.7E-06 48.3 2.7 23 340-362 8-30 (188)
442 2vp4_A Deoxynucleoside kinase; 88.7 0.24 8.1E-06 50.5 3.4 29 339-368 20-48 (230)
443 2erx_A GTP-binding protein DI- 88.6 0.2 6.9E-06 46.9 2.7 22 341-362 5-26 (172)
444 3ld9_A DTMP kinase, thymidylat 88.6 0.27 9.2E-06 50.6 3.8 26 339-364 21-46 (223)
445 3dkp_A Probable ATP-dependent 88.6 1.5 5.1E-05 44.4 9.5 18 340-357 67-84 (245)
446 1c1y_A RAS-related protein RAP 88.6 0.24 8.4E-06 46.2 3.2 23 340-362 4-26 (167)
447 3bc1_A RAS-related protein RAB 88.5 0.24 8.3E-06 47.4 3.2 23 340-362 12-34 (195)
448 2v6i_A RNA helicase; membrane, 88.5 1.1 3.8E-05 50.1 9.1 32 340-371 3-38 (431)
449 2lkc_A Translation initiation 88.4 0.26 9E-06 46.7 3.4 24 339-362 8-31 (178)
450 1r8s_A ADP-ribosylation factor 88.4 0.26 8.8E-06 46.1 3.2 22 341-362 2-23 (164)
451 2xtp_A GTPase IMAP family memb 88.3 1.2 4.3E-05 45.6 8.7 25 339-363 22-46 (260)
452 1pui_A ENGB, probable GTP-bind 88.3 0.12 4E-06 51.0 0.9 25 338-362 25-49 (210)
453 2y8e_A RAB-protein 6, GH09086P 88.2 0.25 8.7E-06 46.7 3.2 23 340-362 15-37 (179)
454 3q85_A GTP-binding protein REM 88.2 0.25 8.6E-06 46.4 3.1 21 341-361 4-24 (169)
455 3nh6_A ATP-binding cassette SU 88.2 0.14 4.9E-06 55.2 1.5 28 336-363 77-104 (306)
456 2atv_A RERG, RAS-like estrogen 88.2 0.29 9.9E-06 47.7 3.6 24 339-362 28-51 (196)
457 2hxs_A RAB-26, RAS-related pro 88.2 0.24 8.1E-06 47.0 2.9 23 340-362 7-29 (178)
458 1ko7_A HPR kinase/phosphatase; 88.2 0.31 1.1E-05 52.8 4.1 29 339-368 144-172 (314)
459 1yrb_A ATP(GTP)binding protein 88.2 0.46 1.6E-05 48.6 5.3 33 339-371 14-48 (262)
460 3q72_A GTP-binding protein RAD 88.1 0.24 8E-06 46.5 2.8 21 341-361 4-24 (166)
461 4a2q_A RIG-I, retinoic acid in 88.1 2.9 9.9E-05 50.5 13.0 33 340-372 264-304 (797)
462 1knx_A Probable HPR(Ser) kinas 88.1 0.27 9.4E-06 53.2 3.6 30 339-369 147-176 (312)
463 3dmq_A RNA polymerase-associat 88.1 0.95 3.2E-05 56.2 8.9 39 339-377 170-213 (968)
464 2npi_A Protein CLP1; CLP1-PCF1 88.0 0.23 7.9E-06 56.5 3.2 27 337-363 136-162 (460)
465 3cph_A RAS-related protein SEC 88.0 0.29 1E-05 48.0 3.5 24 339-362 20-43 (213)
466 1z0f_A RAB14, member RAS oncog 88.0 0.28 9.5E-06 46.4 3.2 24 340-363 16-39 (179)
467 4dsu_A GTPase KRAS, isoform 2B 88.0 0.27 9.4E-06 47.0 3.2 24 340-363 5-28 (189)
468 2fn4_A P23, RAS-related protei 87.9 0.27 9.3E-06 46.6 3.1 23 340-362 10-32 (181)
469 3t1o_A Gliding protein MGLA; G 87.9 0.28 9.5E-06 47.2 3.2 24 340-363 15-38 (198)
470 3con_A GTPase NRAS; structural 87.9 0.28 9.6E-06 47.3 3.2 24 340-363 22-45 (190)
471 1m7b_A RND3/RHOE small GTP-bin 87.8 0.27 9.4E-06 47.4 3.2 23 340-362 8-30 (184)
472 2gj8_A MNME, tRNA modification 87.8 0.26 8.8E-06 47.4 2.9 23 340-362 5-27 (172)
473 3clv_A RAB5 protein, putative; 87.8 0.33 1.1E-05 46.7 3.7 24 339-362 7-30 (208)
474 2a9k_A RAS-related protein RAL 87.8 0.29 9.9E-06 46.6 3.2 24 340-363 19-42 (187)
475 2oil_A CATX-8, RAS-related pro 87.8 0.29 9.8E-06 47.5 3.2 24 340-363 26-49 (193)
476 2wjy_A Regulator of nonsense t 87.6 0.25 8.4E-06 60.2 3.2 32 341-372 373-408 (800)
477 2efe_B Small GTP-binding prote 87.6 0.3 1E-05 46.5 3.2 23 340-362 13-35 (181)
478 2bme_A RAB4A, RAS-related prot 87.6 0.29 1E-05 46.8 3.2 24 340-363 11-34 (186)
479 3oiy_A Reverse gyrase helicase 87.5 0.32 1.1E-05 53.5 3.8 20 340-359 37-56 (414)
480 2p5s_A RAS and EF-hand domain 87.4 0.34 1.2E-05 47.4 3.5 24 339-362 28-51 (199)
481 1dek_A Deoxynucleoside monopho 87.3 0.23 8E-06 51.7 2.4 28 341-368 3-30 (241)
482 3tw8_B RAS-related protein RAB 87.2 0.29 9.9E-06 46.3 2.8 22 340-361 10-31 (181)
483 2g6b_A RAS-related protein RAB 87.1 0.33 1.1E-05 46.1 3.2 25 339-363 10-34 (180)
484 4ag6_A VIRB4 ATPase, type IV s 87.1 0.52 1.8E-05 51.9 5.2 24 339-362 35-58 (392)
485 4tmk_A Protein (thymidylate ki 87.0 0.35 1.2E-05 49.2 3.5 24 340-363 4-27 (213)
486 3kkq_A RAS-related protein M-R 87.0 0.34 1.2E-05 46.3 3.2 23 340-362 19-41 (183)
487 2b6h_A ADP-ribosylation factor 86.9 0.43 1.5E-05 46.7 4.0 23 339-361 29-51 (192)
488 2gf9_A RAS-related protein RAB 86.9 0.34 1.2E-05 46.8 3.2 24 340-363 23-46 (189)
489 1m2o_B GTP-binding protein SAR 86.9 0.33 1.1E-05 47.4 3.2 23 340-362 24-46 (190)
490 2cxx_A Probable GTP-binding pr 86.9 0.26 8.9E-06 47.3 2.3 22 341-362 3-24 (190)
491 4a2w_A RIG-I, retinoic acid in 86.8 3.5 0.00012 50.9 12.9 33 340-372 264-304 (936)
492 1moz_A ARL1, ADP-ribosylation 86.7 0.35 1.2E-05 46.1 3.2 24 338-361 17-40 (183)
493 3tkl_A RAS-related protein RAB 86.7 0.36 1.2E-05 46.6 3.2 24 340-363 17-40 (196)
494 2obl_A ESCN; ATPase, hydrolase 86.6 0.47 1.6E-05 51.9 4.5 26 340-365 72-97 (347)
495 1nij_A Hypothetical protein YJ 86.6 0.46 1.6E-05 51.1 4.4 23 341-363 6-28 (318)
496 3k53_A Ferrous iron transport 86.6 0.32 1.1E-05 50.7 3.0 23 340-362 4-26 (271)
497 1mh1_A RAC1; GTP-binding, GTPa 86.6 0.36 1.2E-05 46.0 3.2 23 340-362 6-28 (186)
498 2bov_A RAla, RAS-related prote 86.5 0.37 1.3E-05 47.0 3.2 24 340-363 15-38 (206)
499 2c9o_A RUVB-like 1; hexameric 86.5 0.51 1.8E-05 53.3 4.8 129 399-552 296-437 (456)
500 2dpy_A FLII, flagellum-specifi 86.5 0.6 2E-05 52.8 5.3 27 340-366 158-184 (438)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=1.1e-79 Score=705.07 Aligned_cols=434 Identities=41% Similarity=0.641 Sum_probs=377.9
Q ss_pred cccccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeec
Q 043051 293 KFISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANG 372 (845)
Q Consensus 293 ~~~~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~ 372 (845)
+++.+...++++|+||+|+++++++|.+++.+++++..|.++|.++|+|+||+||||||||+||+++|+++++||+.+++
T Consensus 3 ~~~~~~~~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~ 82 (476)
T 2ce7_A 3 TMYKPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISG 82 (476)
T ss_dssp --CCCCCSCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred ceeccCCCCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCH
Confidence 44444336789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEE
Q 043051 373 TDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGA 452 (845)
Q Consensus 373 sdf~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaa 452 (845)
+++.++++|.+..+++.+|..|+..+||||||||||.++.+|+ ...++++.+..++++++|.+|+++.... +++||++
T Consensus 83 ~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~-~~~~g~~~~~~~~l~~LL~~ld~~~~~~-~viVIaa 160 (476)
T 2ce7_A 83 SDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRG-AGLGGGHDEREQTLNQLLVEMDGFDSKE-GIIVMAA 160 (476)
T ss_dssp GGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----------CHHHHHHHHHHHHHHHSCGGG-TEEEEEE
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcc-cccCcCcHHHHHHHHHHHHHHhccCCCC-CEEEEEe
Confidence 9999999999999999999999999999999999999998875 2344567788899999999999886544 4999999
Q ss_pred cCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 043051 453 TNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILT 532 (845)
Q Consensus 453 TN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A 532 (845)
||+++.||++++||||||+.+.|++|+.++|.+|++.++++.++. .+.++..+|..++|++|+||.++|++|++.|
T Consensus 161 Tn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~----~~v~l~~la~~t~G~sgadL~~lv~~Aal~A 236 (476)
T 2ce7_A 161 TNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLA----EDVNLEIIAKRTPGFVGADLENLVNEAALLA 236 (476)
T ss_dssp ESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC----TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred cCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCc----chhhHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887665 5567888999999999999999999999999
Q ss_pred HHcCCCccCHHHHHHHHHhcccccccCCCC-CCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCceeeeecccccCC----
Q 043051 533 ARKDLDYIGQEELLEALKRQKGTFETGQED-STDIPEELKLRLAYREAAVAVLACHLPDPYRPIIETDIKSIRSQP---- 607 (845)
Q Consensus 533 ~r~~~~~It~edl~~Al~r~k~~~~~g~e~-~~~ls~~ek~~iA~hEaGhAlv~~~l~~~~~p~~kvtI~~i~~~p---- 607 (845)
.+++...|+.+||.+|++++ ..|.++ ...+++.+++.++|||+|||++++++++++ |+++++| +|
T Consensus 237 ~~~~~~~I~~~dl~~al~~v----~~~~~~~~~~~~~~e~~~~a~~e~G~a~~~~~l~~~~-~~~~~~i-----~prg~~ 306 (476)
T 2ce7_A 237 AREGRDKITMKDFEEAIDRV----IAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGE-PVHRISI-----IPRGYK 306 (476)
T ss_dssp HHTTCSSBCHHHHHHHHHHH----C--------CCCHHHHHHHHHHHHHHHHHHHHSTTCC-CCCEEEC-----C-----
T ss_pred HHcCCCeecHHHHHHHHHHH----hcCccccchhhhcchhhhhHHHHhhhHHHhhccCCcc-ccceeee-----ecCccc
Confidence 99888899999999999999 677666 667899999999999999999999999999 9999999 66
Q ss_pred CCc---cccccccccCCHHHHHHHHHHhhchhHHHHHhhCCccccccccchHHHHHHHHHHHHHHhccCC-ccccccc-c
Q 043051 608 NMR---YAEISGRVFSRKNDYLNAIVRACAPRVIEEQMFGIDNMCWISSKATLDASRLAEFLILQTGMTA-FGKAYYR-N 682 (845)
Q Consensus 608 alg---~~p~~d~~~~tk~~l~~~I~v~LgGRaAEelvfG~~~vttGAs~Dl~~AT~lA~~mV~~~GMs~-~G~~~~~-~ 682 (845)
++| ++|.+|++++||.+|+++|+++|||||||+++||+. ||||+|||++||+||+.||++||||+ +|++.|. .
T Consensus 307 alg~~~~~p~~~~~~~~~~~l~~~i~~~l~Gr~ae~~~~g~~--~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~ 384 (476)
T 2ce7_A 307 ALGYTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFGDV--TSGAANDIERATEIARNMVCQLGMSEELGPLAWGKE 384 (476)
T ss_dssp ------------CCSCBHHHHHHHHHHHTHHHHHHHHHHSSC--CGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-
T ss_pred ccceEEEcCcccccccCHHHHHHHHHHHHhHHHHHhhhcCCC--CcccHHHHHHHHHHHHHHHHHhCCCCcCCceeecCC
Confidence 566 678889999999999999999999999999999976 99999999999999999999999999 9999994 3
Q ss_pred CCCccc--------cchHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhc
Q 043051 683 QSDLVP--------NLATKLEALRDEYMRFAVE----KCASVLREYHSAVETITDILLEKGEIKAEEIWDIYKK 744 (845)
Q Consensus 683 ~~~~~~--------~~s~~~~~~iD~ev~~l~~----~a~~lL~~~r~~Le~LA~~LLekEtL~~~ei~~il~~ 744 (845)
.++.|+ .||+++++.||+||+++++ +|++||++||+.|++||++|||+|||+++||.+|++.
T Consensus 385 ~~~~~~~~~~~~~~~~s~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~ 458 (476)
T 2ce7_A 385 EQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSE 458 (476)
T ss_dssp ------------CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHHTC-
T ss_pred CccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHHHHhcc
Confidence 333333 3899999999999999987 9999999999999999999999999999999999975
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=4.9e-78 Score=695.05 Aligned_cols=445 Identities=42% Similarity=0.603 Sum_probs=399.2
Q ss_pred hhhhhccccccccccccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHH
Q 043051 281 RRALGSLGKSRAKFISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIA 360 (845)
Q Consensus 281 ~~~~~~~~~s~a~~~~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA 360 (845)
++.|+ ||+|+++++... ++++|+||+|++++++++.+++.+++++..|..+|.++|+|+||+||||||||+||+++|
T Consensus 9 ~~~~~-~~~~~~~~~~~~--~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa 85 (499)
T 2dhr_A 9 DSAFS-FTKSRARVLTEA--PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVA 85 (499)
T ss_dssp ----------CCEEECSC--CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHH
T ss_pred CCCCC-cccCcceeeccC--CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHH
Confidence 34565 999999887654 889999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCeEEeechhHHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCC
Q 043051 361 GEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGF 440 (845)
Q Consensus 361 ~elg~pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~ 440 (845)
++++.+|+.+++++|.++++|.+..+++.+|+.++...|||+||||||.++.+++. ..++.+++..++++++|.+|+|+
T Consensus 86 ~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~-~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 86 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGS-GVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp HHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSS-STTTSSHHHHHHHHHHHHHGGGC
T ss_pred HHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhcc-CcCCCcHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999998888999999999999887752 23455778889999999999998
Q ss_pred cccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHH
Q 043051 441 KVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAE 520 (845)
Q Consensus 441 ~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaD 520 (845)
.... .+++|++||+|+.||++++||||||++|.|++|+.++|.+||+.+++...+. .+.++..+|..++|++|+|
T Consensus 165 ~~~~-~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~----~dv~l~~lA~~t~G~~gad 239 (499)
T 2dhr_A 165 EKDT-AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA----EDVDLALLAKRTPGFVGAD 239 (499)
T ss_dssp CSSC-CCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCC----CSSTTHHHHTTSCSCCHHH
T ss_pred ccCc-cEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCC----hHHHHHHHHHhcCCCCHHH
Confidence 7544 4999999999999999999999999999999999999999999988766554 5677899999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcccccccCCCC-CCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCceeee
Q 043051 521 LQNILNEAGILTARKDLDYIGQEELLEALKRQKGTFETGQED-STDIPEELKLRLAYREAAVAVLACHLPDPYRPIIETD 599 (845)
Q Consensus 521 L~~LvneAal~A~r~~~~~It~edl~~Al~r~k~~~~~g~e~-~~~ls~~ek~~iA~hEaGhAlv~~~l~~~~~p~~kvt 599 (845)
|.++|++|++.|.+++...|+++||.+|++++ ..|.++ +..+++.+++.++|||+||||+++++++.+ |++|++
T Consensus 240 L~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v----~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~~l~~~~-~v~~~~ 314 (499)
T 2dhr_A 240 LENLLNEAALLAAREGRRKITMKDLEEAADRV----MMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHAD-GVHKVT 314 (499)
T ss_dssp HHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHH----TTCSSSSCCCCCTTHHHHHHHHHHHHHHHHCCSSSCC-CCCCEE
T ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH----hcccccccchhhHHHHhhhHHHHHHHHHHHhhcCCCC-eeeEEE
Confidence 99999999999998888899999999999999 777665 678899999999999999999999999998 999999
Q ss_pred ecccccCC---CCccc-cc-cccccCCHHHHHHHHHHhhchhHHHHHhhCCccccccccchHHHHHHHHHHHHHHhccCC
Q 043051 600 IKSIRSQP---NMRYA-EI-SGRVFSRKNDYLNAIVRACAPRVIEEQMFGIDNMCWISSKATLDASRLAEFLILQTGMTA 674 (845)
Q Consensus 600 I~~i~~~p---alg~~-p~-~d~~~~tk~~l~~~I~v~LgGRaAEelvfG~~~vttGAs~Dl~~AT~lA~~mV~~~GMs~ 674 (845)
| +| ++|+. |. .+++++||.+|+++|+++|||||||+++||+. ||||+|||++||+||+.||++||||+
T Consensus 315 i-----~pr~~~~g~~~p~q~~~~~~t~~~l~~~i~~~lgGr~ae~~~~g~~--~~ga~~Dl~~at~~a~~mv~~~gm~~ 387 (499)
T 2dhr_A 315 I-----VPRGRALGFMMPRREDMLHWSRKRLLDQIAVALAGRAAEEIVFDDV--TTGAENDFRQATELARRMITEWGMHP 387 (499)
T ss_dssp S-----CCSSCTTCSSHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHSCSC--CBCCCHHHHHHHHHHHHHHTTSCCCS
T ss_pred e-----ecCCCcCcccccchhhhhccCHHHHHHHHHHHhhhHhHHHhhhccc--CcccHHHHHHHHHHHHHHHHHhCCCC
Confidence 9 66 56633 66 78999999999999999999999999999976 99999999999999999999999999
Q ss_pred -ccccccccCCCccc------cchHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHh
Q 043051 675 -FGKAYYRNQSDLVP------NLATKLEALRDEYMRFAVE----KCASVLREYHSAVETITDILLEKGEIKAEEIWDIYK 743 (845)
Q Consensus 675 -~G~~~~~~~~~~~~------~~s~~~~~~iD~ev~~l~~----~a~~lL~~~r~~Le~LA~~LLekEtL~~~ei~~il~ 743 (845)
+|++.|....+.++ +||+++++.||+||+++++ +|++||++||+.|++||++|||+|||+++||.+|++
T Consensus 388 ~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~ 467 (499)
T 2dhr_A 388 EFGPVAYAVREDTYLGGYDVRQYSEETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVE 467 (499)
T ss_dssp SSCSCCCCCCCCCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHT
T ss_pred CCCceeecCCCccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHhc
Confidence 99999954333443 3899999999999999987 999999999999999999999999999999999998
Q ss_pred cCC
Q 043051 744 KAP 746 (845)
Q Consensus 744 ~~~ 746 (845)
..+
T Consensus 468 ~~~ 470 (499)
T 2dhr_A 468 GLP 470 (499)
T ss_dssp TCC
T ss_pred cCC
Confidence 653
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-51 Score=455.93 Aligned_cols=249 Identities=40% Similarity=0.678 Sum_probs=234.9
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHH
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFV 376 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~ 376 (845)
.+.|.++|+||+|++++|++|++.+.+ +++|+.|.++|+++|+|+|||||||||||+||+|+|+++++||+.++++++.
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV 219 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS
T ss_pred cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhh
Confidence 347899999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCC
Q 043051 377 EMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRL 456 (845)
Q Consensus 377 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~p 456 (845)
++|+|.++..++.+|..|+.++||||||||||+++++|+.. .++++.+...+++++|.+|||+....+ |+||+|||+|
T Consensus 220 sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~-~~~~~~~~~~~l~~lL~~lDg~~~~~~-V~vIaATNrp 297 (405)
T 4b4t_J 220 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEG-SGGGDSEVQRTMLELLNQLDGFETSKN-IKIIMATNRL 297 (405)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCS-SSGGGGHHHHHHHHHHHHHHTTTCCCC-EEEEEEESCS
T ss_pred ccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCC-CCCCcHHHHHHHHHHHHhhhccCCCCC-eEEEeccCCh
Confidence 99999999999999999999999999999999999988633 334566778899999999999986555 9999999999
Q ss_pred CCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcC
Q 043051 457 DILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKD 536 (845)
Q Consensus 457 d~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~ 536 (845)
+.|||||+||||||+.|+|++|+.++|.+||+.|+++.++. .++++..+|+.|+||||+||.++|++|++.|.+++
T Consensus 298 d~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~----~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~ 373 (405)
T 4b4t_J 298 DILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT----RGINLRKVAEKMNGCSGADVKGVCTEAGMYALRER 373 (405)
T ss_dssp SSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC----SSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC----ccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999988776 67889999999999999999999999999999999
Q ss_pred CCccCHHHHHHHHHhc
Q 043051 537 LDYIGQEELLEALKRQ 552 (845)
Q Consensus 537 ~~~It~edl~~Al~r~ 552 (845)
...|+++||..|++++
T Consensus 374 ~~~vt~~Df~~Al~~v 389 (405)
T 4b4t_J 374 RIHVTQEDFELAVGKV 389 (405)
T ss_dssp CSBCCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHH
Confidence 9999999999999988
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-50 Score=448.98 Aligned_cols=253 Identities=36% Similarity=0.609 Sum_probs=236.6
Q ss_pred cccccCCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeech
Q 043051 295 ISAEETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGT 373 (845)
Q Consensus 295 ~~~~~~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~s 373 (845)
...++.+.++|+||+|++++|++|.+.+.+ +++|+.|..+|+++|+|||||||||||||+||+|+|++++.+|+.++++
T Consensus 171 ~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s 250 (437)
T 4b4t_I 171 MKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGS 250 (437)
T ss_dssp CEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESG
T ss_pred eeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHH
Confidence 334558899999999999999999999988 9999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEc
Q 043051 374 DFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGAT 453 (845)
Q Consensus 374 df~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaT 453 (845)
++.++|+|.++..++.+|..|+.++||||||||||+++.+|...+ .+++.+...+++++|.+|||+....+ |+||+||
T Consensus 251 ~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~-~~~~~~~~~~l~~LL~~lDg~~~~~~-ViVIaAT 328 (437)
T 4b4t_I 251 ELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSN-SGGEREIQRTMLELLNQLDGFDDRGD-VKVIMAT 328 (437)
T ss_dssp GGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSS-CSSCCHHHHHHHHHHHHHHHCCCSSS-EEEEEEE
T ss_pred HhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCC-CCccHHHHHHHHHHHHHhhCcCCCCC-EEEEEeC
Confidence 999999999999999999999999999999999999999987433 34456778899999999999876555 9999999
Q ss_pred CCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 043051 454 NRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTA 533 (845)
Q Consensus 454 N~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~ 533 (845)
|+|+.|||||+||||||++|+|++||.++|.+||+.|+++..+. .+++++.||+.|+||||+||.++|++|++.|.
T Consensus 329 Nrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~----~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Ai 404 (437)
T 4b4t_I 329 NKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLS----EDVNLETLVTTKDDLSGADIQAMCTEAGLLAL 404 (437)
T ss_dssp SCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBC----SCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred CChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCC----CcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988776 57889999999999999999999999999999
Q ss_pred HcCCCccCHHHHHHHHHhcc
Q 043051 534 RKDLDYIGQEELLEALKRQK 553 (845)
Q Consensus 534 r~~~~~It~edl~~Al~r~k 553 (845)
+++...|+++||.+|++++.
T Consensus 405 r~~~~~It~eDf~~Al~rv~ 424 (437)
T 4b4t_I 405 RERRMQVTAEDFKQAKERVM 424 (437)
T ss_dssp HTTCSCBCHHHHHHHHHHHH
T ss_pred HcCCCccCHHHHHHHHHHHh
Confidence 99999999999999999883
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-49 Score=448.01 Aligned_cols=256 Identities=38% Similarity=0.627 Sum_probs=238.3
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhH
Q 043051 297 AEETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDF 375 (845)
Q Consensus 297 ~~~~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf 375 (845)
.++.|.++|+||+|++++|++|++.+.+ +++|+.|..+|+++|+|||||||||||||+||+|+|++++++|+.++++++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence 3458899999999999999999999888 999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCC
Q 043051 376 VEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNR 455 (845)
Q Consensus 376 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~ 455 (845)
.++|+|.++..++.+|..|+.++||||||||+|+++.+|+.. ..+.......+++++|.+||++....+ |+||+|||+
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~-~~~~~~~~~~~l~~lL~~lDg~~~~~~-ViVIaATNr 357 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDD-GAGGDNEVQRTMLELITQLDGFDPRGN-IKVMFATNR 357 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSS-SCGGGGHHHHHHHHHHHHHHSSCCTTT-EEEEEECSC
T ss_pred hcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCc-CCCccHHHHHHHHHHHHHhhccCCCCc-EEEEeCCCC
Confidence 999999999999999999999999999999999999988633 234456778899999999999876555 999999999
Q ss_pred CCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHc
Q 043051 456 LDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARK 535 (845)
Q Consensus 456 pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~ 535 (845)
|+.|||||+||||||++|+|++|+.++|.+||+.|+++..+. .+++++.||+.|+||||+||.++|++|++.|.++
T Consensus 358 pd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~----~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~ 433 (467)
T 4b4t_H 358 PNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE----RGIRWELISRLCPNSTGAELRSVCTEAGMFAIRA 433 (467)
T ss_dssp TTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC----SSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred cccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCC----CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999988776 5788999999999999999999999999999999
Q ss_pred CCCccCHHHHHHHHHhcccccccCCCC
Q 043051 536 DLDYIGQEELLEALKRQKGTFETGQED 562 (845)
Q Consensus 536 ~~~~It~edl~~Al~r~k~~~~~g~e~ 562 (845)
+...|+++||..|++++ ..|.++
T Consensus 434 ~~~~it~~Df~~Al~kV----~~g~~k 456 (467)
T 4b4t_H 434 RRKVATEKDFLKAVDKV----ISGYKK 456 (467)
T ss_dssp TCSSBCHHHHHHHHHHH----HHHHCC
T ss_pred CCCccCHHHHHHHHHHH----hcCccc
Confidence 99999999999999998 555554
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-49 Score=446.42 Aligned_cols=251 Identities=40% Similarity=0.688 Sum_probs=234.5
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHH
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFV 376 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~ 376 (845)
++.++++|+||+|.+++|++|.+.+.+ +++|+.|.++|+++|+|+|||||||||||++|+|+|+++++||+.++++++.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 457899999999999999999987666 9999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCC
Q 043051 377 EMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRL 456 (845)
Q Consensus 377 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~p 456 (845)
++|+|.++..++.+|..|+.++||||||||||+++.+|... ..++..+...+++++|.+|||+....+ |+||||||+|
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~-~~~~~~~~~~~~~~lL~~ldg~~~~~~-ViVIaaTNrp 330 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDS-EKSGDREVQRTMLELLNQLDGFSSDDR-VKVLAATNRV 330 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSG-GGGTTHHHHHHHHHHHHHHTTSCSSCS-SEEEEECSSC
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCC-CCCCchHHHHHHHHHHHHhhccCCCCC-EEEEEeCCCc
Confidence 99999999999999999999999999999999999998633 234456778899999999999986555 9999999999
Q ss_pred CCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcC
Q 043051 457 DILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKD 536 (845)
Q Consensus 457 d~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~ 536 (845)
+.|||||+||||||+.|+|++|+.++|.+||+.|+++..+. .++++..||+.|+||||+||.++|++|++.|.+++
T Consensus 331 ~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~----~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~ 406 (434)
T 4b4t_M 331 DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD----DDINWQELARSTDEFNGAQLKAVTVEAGMIALRNG 406 (434)
T ss_dssp CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC----SCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred hhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC----CcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999988766 57789999999999999999999999999999999
Q ss_pred CCccCHHHHHHHHHhccc
Q 043051 537 LDYIGQEELLEALKRQKG 554 (845)
Q Consensus 537 ~~~It~edl~~Al~r~k~ 554 (845)
...|+++||.+|++++++
T Consensus 407 ~~~i~~~Df~~Al~~v~~ 424 (434)
T 4b4t_M 407 QSSVKHEDFVEGISEVQA 424 (434)
T ss_dssp CSSBCHHHHHHHHHSCSS
T ss_pred CCCcCHHHHHHHHHHHhC
Confidence 999999999999999843
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-49 Score=444.02 Aligned_cols=249 Identities=41% Similarity=0.684 Sum_probs=234.0
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH
Q 043051 299 ETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE 377 (845)
Q Consensus 299 ~~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~ 377 (845)
+.+.++|+||+|++++|++|.+.+.+ +++|+.|..+|+++|+|+|||||||||||+||+|+|++++++|+.++++++.+
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 47899999999999999999999988 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCC
Q 043051 378 MFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLD 457 (845)
Q Consensus 378 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd 457 (845)
+|+|.++..++.+|..|+.++||||||||||+++.+|...+ ...+.+...+++++|.+|||+....+ |+||+|||+|+
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~-~~~~~~~~~~l~~lL~~lDg~~~~~~-vivI~ATNrp~ 331 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEG-TSADREIQRTLMELLTQMDGFDNLGQ-TKIIMATNRPD 331 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSC-CSSTTHHHHHHHHHHHHHHSSSCTTS-SEEEEEESSTT
T ss_pred ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCC-CCcchHHHHHHHHHHHHhhcccCCCC-eEEEEecCCch
Confidence 99999999999999999999999999999999999886433 23456778899999999999976554 99999999999
Q ss_pred CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCC
Q 043051 458 ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDL 537 (845)
Q Consensus 458 ~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~ 537 (845)
.|||||+||||||+.|+|++|+.++|.+||+.|+++..+. .+.++..+|+.|+||||+||.++|++|++.|.+++.
T Consensus 332 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~----~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~ 407 (437)
T 4b4t_L 332 TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT----GEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDR 407 (437)
T ss_dssp SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC----SCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC----cccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999987766 577899999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHhcc
Q 043051 538 DYIGQEELLEALKRQK 553 (845)
Q Consensus 538 ~~It~edl~~Al~r~k 553 (845)
..|+++||..|++++.
T Consensus 408 ~~i~~~d~~~Al~~v~ 423 (437)
T 4b4t_L 408 DHINPDDLMKAVRKVA 423 (437)
T ss_dssp SSBCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999999884
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-48 Score=435.81 Aligned_cols=249 Identities=41% Similarity=0.615 Sum_probs=233.2
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHH
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFV 376 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~ 376 (845)
++.+.++|+||+|++++|++|.+.+.+ +++|+.|..+|+++|+|+|||||||||||++|+|+|++++++|+.++++++.
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFV 243 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhh
Confidence 447899999999999999999998876 9999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCC
Q 043051 377 EMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRL 456 (845)
Q Consensus 377 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~p 456 (845)
++|+|.++..++.+|..|+.++||||||||+|+++.+|... ..+++.+...+++++|.+|||+....+ |+||+|||+|
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~-~~~~~~~~~r~l~~lL~~ldg~~~~~~-v~vI~aTN~~ 321 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDA-QTGSDREVQRILIELLTQMDGFDQSTN-VKVIMATNRA 321 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSS-CSCCCCHHHHHHHHHHHHHHHSCSSCS-EEEEEEESCS
T ss_pred ccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCC-CCCCChHHHHHHHHHHHHhhCCCCCCC-EEEEEecCCh
Confidence 99999999999999999999999999999999999998643 334456778899999999999986655 9999999999
Q ss_pred CCCChhhhccCcccEEEEeC-CCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHc
Q 043051 457 DILDPALLRKGRFDKIVRVG-LPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARK 535 (845)
Q Consensus 457 d~LDpALlRpgRFdr~I~v~-~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~ 535 (845)
+.|||||+||||||+.|+|+ +|+.++|.+||+.|+++.++. .+++++.+|..|+||||+||.++|++|++.|.++
T Consensus 322 ~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~----~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~ 397 (428)
T 4b4t_K 322 DTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA----PEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK 397 (428)
T ss_dssp SSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC----TTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred hhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC----cccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999996 899999999999999988776 6788999999999999999999999999999999
Q ss_pred CCCccCHHHHHHHHHhc
Q 043051 536 DLDYIGQEELLEALKRQ 552 (845)
Q Consensus 536 ~~~~It~edl~~Al~r~ 552 (845)
+...|+++||.+|+.++
T Consensus 398 ~~~~i~~~d~~~A~~~~ 414 (428)
T 4b4t_K 398 NRYVILQSDLEEAYATQ 414 (428)
T ss_dssp TCSSBCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 99999999999999876
No 9
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=100.00 E-value=2.9e-43 Score=367.96 Aligned_cols=183 Identities=23% Similarity=0.280 Sum_probs=152.1
Q ss_pred cCCCC-CCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCceeeeecccccCC---CCc---cccccccccCCHHHHHHHHH
Q 043051 558 TGQED-STDIPEELKLRLAYREAAVAVLACHLPDPYRPIIETDIKSIRSQP---NMR---YAEISGRVFSRKNDYLNAIV 630 (845)
Q Consensus 558 ~g~e~-~~~ls~~ek~~iA~hEaGhAlv~~~l~~~~~p~~kvtI~~i~~~p---alg---~~p~~d~~~~tk~~l~~~I~ 630 (845)
+|+++ +..+++++|+++|||||||||+++++++.+ |++|||| +| ++| ++|.+|++++||++|+++|+
T Consensus 2 ~G~ekk~~~~s~~ek~~vAyHEAGHAlva~~l~~~~-pV~KVTI-----iPRG~alG~t~~~P~ed~~~~tk~~l~~~i~ 75 (238)
T 2di4_A 2 QGPLGSHMTISPKEKEKIAIHEAGHALMGLVSDDDD-KVHKISI-----IPRGMALGVTQQLPIEDKHIYDKKDLYNKIL 75 (238)
T ss_dssp --------CCCHHHHHHHHHHHHHHHHHHHHCSSCC-CCCCEEC-----C----------------CCCCBHHHHHHHHH
T ss_pred CCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCC-ceeEEEE-----eecCCcceEEEeCCcccccccCHHHHHHHHH
Confidence 57776 678999999999999999999999999998 9999999 77 677 67888999999999999999
Q ss_pred HhhchhHHHHHhhCCccccccccchHHHHHHHHHHHHHHhccCC-ccccccccCCCccc-------cchHHHHHHHHHHH
Q 043051 631 RACAPRVIEEQMFGIDNMCWISSKATLDASRLAEFLILQTGMTA-FGKAYYRNQSDLVP-------NLATKLEALRDEYM 702 (845)
Q Consensus 631 v~LgGRaAEelvfG~~~vttGAs~Dl~~AT~lA~~mV~~~GMs~-~G~~~~~~~~~~~~-------~~s~~~~~~iD~ev 702 (845)
++|||||||+++||..++||||+|||++||+||+.||++||||+ +|++.|...++.|+ +||++|++.||+||
T Consensus 76 v~LgGRaAEelifG~g~vttGA~~Dl~~AT~iAr~MV~~~GMs~~lG~v~~~~~~~~flg~~~~~~~~Se~ta~~iD~Ev 155 (238)
T 2di4_A 76 VLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVANPFLGGMTTAVDTSPDLLREIDEEV 155 (238)
T ss_dssp HHHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC----------CCCSCCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHhCCCCcccChHhHHHHHHHHHHHHHHHhCCCCCCCceeecCCccccccccccccccCHHHHHHHHHHH
Confidence 99999999999995445599999999999999999999999999 99999953332433 39999999999999
Q ss_pred HHHHH----HHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhcCC
Q 043051 703 RFAVE----KCASVLREYHSAVETITDILLEKGEIKAEEIWDIYKKAP 746 (845)
Q Consensus 703 ~~l~~----~a~~lL~~~r~~Le~LA~~LLekEtL~~~ei~~il~~~~ 746 (845)
+++++ +|++||++||+.|++||++||++|||+++||.+|++..+
T Consensus 156 ~~il~~ay~~a~~iL~~nr~~L~~lA~~Lle~EtL~~~ei~~il~~~~ 203 (238)
T 2di4_A 156 KRIITEQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLYG 203 (238)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHccCC
Confidence 98887 999999999999999999999999999999999998764
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.3e-43 Score=426.66 Aligned_cols=251 Identities=42% Similarity=0.715 Sum_probs=190.1
Q ss_pred CCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHh
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM 378 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~ 378 (845)
.++++|+|++|++++|++|.+.+.+ +++|+.|.++|.++|+|+|||||||||||++|+|+|++++.+|+.++++++.++
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~ 550 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcc
Confidence 6789999999999999999999988 789999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCC
Q 043051 379 FVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDI 458 (845)
Q Consensus 379 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~ 458 (845)
|+|.+++.++.+|..|+..+||||||||||+++.+|+.. .+.++......+++||.+|||+....+ |+||+|||+|+.
T Consensus 551 ~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~-~~~~~~~~~rv~~~lL~~mdg~~~~~~-V~vi~aTN~p~~ 628 (806)
T 3cf2_A 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN-IGDGGGAADRVINQILTEMDGMSTKKN-VFIIGATNRPDI 628 (806)
T ss_dssp TCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC---------------CHHHHHHHHHHHSSCSSSS-EEEECC-CCSSS
T ss_pred ccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCC-CCCCchHHHHHHHHHHHHHhCCCCCCC-EEEEEeCCCchh
Confidence 999999999999999999999999999999999988632 223344566789999999999976555 999999999999
Q ss_pred CChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCC-
Q 043051 459 LDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDL- 537 (845)
Q Consensus 459 LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~- 537 (845)
||+|++||||||++|+|++|+.++|.+||+.++++.++. .++++..||+.|+||||+||.++|++|++.|.++..
T Consensus 629 lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~----~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~ 704 (806)
T 3cf2_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA----KDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIE 704 (806)
T ss_dssp SCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C----CC----------------CHHHHHHHHHHHHHHHHHC
T ss_pred CCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC----CCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887766 678899999999999999999999999999987531
Q ss_pred ------------------------CccCHHHHHHHHHhccccc
Q 043051 538 ------------------------DYIGQEELLEALKRQKGTF 556 (845)
Q Consensus 538 ------------------------~~It~edl~~Al~r~k~~~ 556 (845)
..|+++||.+|+.+++++.
T Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSv 747 (806)
T 3cf2_A 705 SEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 747 (806)
T ss_dssp -----------------------CCC----CCTTTC-------
T ss_pred hhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCC
Confidence 2478888888888886543
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=8.9e-41 Score=401.98 Aligned_cols=250 Identities=38% Similarity=0.618 Sum_probs=228.6
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH
Q 043051 299 ETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE 377 (845)
Q Consensus 299 ~~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~ 377 (845)
..+.++|+||+|+++++++|++++.+ +++|+.|..+|.++|+|||||||||||||+|||++|++++++|+.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 35789999999999999999999988 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCC
Q 043051 378 MFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLD 457 (845)
Q Consensus 378 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd 457 (845)
+++|.++..++.+|+.|+.++||||||||||+|+.+|+.. .+......+++||..||++....+ |+||+|||+++
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~----~~~~~~riv~~LL~~mdg~~~~~~-V~VIaaTN~~d 351 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT----HGEVERRIVSQLLTLMDGLKQRAH-VIVMAATNRPN 351 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTC----CCTTHHHHHHHHHTHHHHCCGGGC-EEEEEECSSTT
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCC----CChHHHHHHHHHHHHHhcccccCC-EEEEEecCChh
Confidence 9999999999999999999999999999999999988632 233446788899999999876554 99999999999
Q ss_pred CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCC
Q 043051 458 ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDL 537 (845)
Q Consensus 458 ~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~ 537 (845)
.||++|+||||||+.|+++.|+.++|.+||+.|+++..+. .++++..+|..|+||+|+||.++|++|++.|.++..
T Consensus 352 ~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~----~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~ 427 (806)
T 3cf2_A 352 SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA----DDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 427 (806)
T ss_dssp TSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC----TTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC----cccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999887776 678899999999999999999999999999887532
Q ss_pred -----------------CccCHHHHHHHHHhcccccc
Q 043051 538 -----------------DYIGQEELLEALKRQKGTFE 557 (845)
Q Consensus 538 -----------------~~It~edl~~Al~r~k~~~~ 557 (845)
-.|+++||..|+....+...
T Consensus 428 ~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~ 464 (806)
T 3cf2_A 428 DLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSAL 464 (806)
T ss_dssp HHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCC
T ss_pred ccccccccccchhhhccceeeHHHHHHHHHhCCCccc
Confidence 24788999999999876544
No 12
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=1.5e-37 Score=327.13 Aligned_cols=249 Identities=54% Similarity=0.818 Sum_probs=222.4
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE 377 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~ 377 (845)
++.++.+|+||+|++.++++|.+++.++.++..|..+|...|+|+||+||||||||++|+++|++++.|++.++++++.+
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 44788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCC
Q 043051 378 MFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLD 457 (845)
Q Consensus 378 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd 457 (845)
.+.|.+...++.+|+.+....|+++||||+|.++..++. ...++..+....++++|..++++... .+++||++||+++
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~-~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~~vI~~tn~~~ 161 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGA-GLGGGHDEREQTLNQMLVEMDGFEGN-EGIIVIAATNRPD 161 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCST-TSCCTTCHHHHHHHHHHHHHHTCCSS-SCEEEEEEESCTT
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCC-CcCCCchHHHHHHHHHHHHhhCcccC-CCEEEEEeeCCch
Confidence 888988999999999999888999999999999887652 23345566677889999999987644 4599999999999
Q ss_pred CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCC
Q 043051 458 ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDL 537 (845)
Q Consensus 458 ~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~ 537 (845)
.+|++++|++||++.+.++.|+.++|.+|++.+++..++. .+.++..++..++||+++||.++|++|+..|.+++.
T Consensus 162 ~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~----~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~ 237 (257)
T 1lv7_A 162 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA----PDIDAAIIARGTPGFSGADLANLVNEAALFAARGNK 237 (257)
T ss_dssp TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC----TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCC----ccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999876655 456688899999999999999999999999999998
Q ss_pred CccCHHHHHHHHHhc
Q 043051 538 DYIGQEELLEALKRQ 552 (845)
Q Consensus 538 ~~It~edl~~Al~r~ 552 (845)
..|+.+|+.+|++++
T Consensus 238 ~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 238 RVVSMVEFEKAKDKI 252 (257)
T ss_dssp SSBCHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHH
Confidence 999999999999998
No 13
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=7e-37 Score=331.13 Aligned_cols=248 Identities=42% Similarity=0.696 Sum_probs=217.4
Q ss_pred CCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHh
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM 378 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~ 378 (845)
.++++|+||+|++++++.|.+.+.+ +++++.|..+|..+++++||+||||||||++|+++|++++.+|+.++|+++.+.
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 6789999999999999999999887 889999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCC
Q 043051 379 FVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDI 458 (845)
Q Consensus 379 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~ 458 (845)
++|.....++.+|..|+...||||||||||.+...++..... ........+.++|..++++... .+++||++||+++.
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~-~~~~~~~~~~~lL~~l~~~~~~-~~v~vi~atn~~~~ 166 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD-GGGAADRVINQILTEMDGMSTK-KNVFIIGATNRPDI 166 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCC-SSCSCCHHHHHHHHHHHSSCTT-SSEEEEEEESCGGG
T ss_pred hcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCC-cchHHHHHHHHHHHHhhcccCC-CCEEEEEecCCccc
Confidence 999999999999999999999999999999998776532111 1112234567778888877544 45999999999999
Q ss_pred CChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcC--
Q 043051 459 LDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKD-- 536 (845)
Q Consensus 459 LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~-- 536 (845)
||++++|+|||++.++++.|+.++|.+|++.+++..++. .+.++..++..+.||+|+||.++|++|++.|.++.
T Consensus 167 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~----~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~ 242 (301)
T 3cf0_A 167 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA----KDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIE 242 (301)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC----SSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC----ccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999877654 56778899999999999999999999998887542
Q ss_pred -----------------------CCccCHHHHHHHHHhcc
Q 043051 537 -----------------------LDYIGQEELLEALKRQK 553 (845)
Q Consensus 537 -----------------------~~~It~edl~~Al~r~k 553 (845)
...|+.+||..|+.+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ 282 (301)
T 3cf0_A 243 SEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFAR 282 (301)
T ss_dssp HHC--------------------CCCBCHHHHHHHHTTCC
T ss_pred hhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcC
Confidence 13589999999999884
No 14
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=7.3e-37 Score=327.65 Aligned_cols=251 Identities=38% Similarity=0.642 Sum_probs=205.9
Q ss_pred CCCCCcccccccHHHHHHHHHHH-HHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHh
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIV-RILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM 378 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv-~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~ 378 (845)
.+.++|+||+|.+++|++|.+.+ ..+.+++.|..++..+|+|++|+||||||||+||+++|++++.+++.+++.++.+.
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 57899999999999999999854 55899999999999999999999999999999999999999999999999999888
Q ss_pred hhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCC
Q 043051 379 FVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDI 458 (845)
Q Consensus 379 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~ 458 (845)
+.|.....++.+|+.++...||++|+||+|.++..|+... .......+++++.+|+|...... ++++++||+|+.
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~----~~~~~~~~~~~l~~Lsgg~~~~~-~i~ia~tn~p~~ 158 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE----TGASVRVVNQLLTEMDGLEARQQ-VFIMAATNRPDI 158 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-------------CTTHHHHHHHHHHTCCSTTC-EEEEEEESCGGG
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCc----chHHHHHHHHHHHhhhcccccCC-EEEEeecCChhh
Confidence 9999999999999999888999999999999987654221 11223467889999998865444 999999999999
Q ss_pred CChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHcC
Q 043051 459 LDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELT--EDFTGAELQNILNEAGILTARKD 536 (845)
Q Consensus 459 LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t--~GfSgaDL~~LvneAal~A~r~~ 536 (845)
||++++||||||+.|++++|+.++|.+||+.++++.... ....+.++..+|..+ +||||+||.++|++|++.|.++.
T Consensus 159 LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~ 237 (274)
T 2x8a_A 159 IDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKP-PLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQE 237 (274)
T ss_dssp SCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTT-BBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCC-CCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988642211 112577899999875 59999999999999999988752
Q ss_pred -----------CCccCHHHHHHHHHhccccc
Q 043051 537 -----------LDYIGQEELLEALKRQKGTF 556 (845)
Q Consensus 537 -----------~~~It~edl~~Al~r~k~~~ 556 (845)
...|+++||.+|+++++++.
T Consensus 238 ~~~~~~~~~~~~~~i~~~df~~al~~~~ps~ 268 (274)
T 2x8a_A 238 MARQKSGNEKGELKVSHKHFEEAFKKVRSSI 268 (274)
T ss_dssp C-----------CCBCHHHHHHHHTTCCCCC
T ss_pred HhhccccccccCCeecHHHHHHHHHHhcCCC
Confidence 23699999999999996543
No 15
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=7.1e-37 Score=320.73 Aligned_cols=249 Identities=45% Similarity=0.676 Sum_probs=199.6
Q ss_pred CCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhhh
Q 043051 301 TGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFV 380 (845)
Q Consensus 301 ~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~v 380 (845)
++++|+||+|++++++.|.+++.++..++.|..+|...|+++||+||||||||++|+++|++++.+++.++++++.+.+.
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCC
Q 043051 381 GVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILD 460 (845)
Q Consensus 381 G~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LD 460 (845)
|.+...++.+|..+....|+||||||+|.+..+++....+..+.+....+++++.++++.... .+++||++||.++.||
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~-~~~~vi~~tn~~~~ld 159 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT-DHVIVLASTNRADILD 159 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT-CCEEEEEEESCGGGGG
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC-CCEEEEecCCChhhcC
Confidence 989999999999999888999999999999877653322223455667889999998886543 4599999999999999
Q ss_pred hhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCCcc
Q 043051 461 PALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDLDYI 540 (845)
Q Consensus 461 pALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~~~I 540 (845)
++++|+|||++.++++.|+.++|.+|++.++...++... .+..+..++..+.|++|++|.++|++|+..|.+++...|
T Consensus 160 ~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~--~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i 237 (262)
T 2qz4_A 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQS--STFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSV 237 (262)
T ss_dssp SGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBT--HHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------C
T ss_pred HHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcc--hhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999999988766532 344568999999999999999999999999998888899
Q ss_pred CHHHHHHHHHhc
Q 043051 541 GQEELLEALKRQ 552 (845)
Q Consensus 541 t~edl~~Al~r~ 552 (845)
+.+|+..|+.++
T Consensus 238 ~~~d~~~a~~~~ 249 (262)
T 2qz4_A 238 HTLNFEYAVERV 249 (262)
T ss_dssp CBCCHHHHHHHH
T ss_pred CHHHHHHHHHHh
Confidence 999999999988
No 16
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=324.95 Aligned_cols=226 Identities=36% Similarity=0.538 Sum_probs=202.5
Q ss_pred CCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-CCCeEEeechhHHH
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA-GVPFFAANGTDFVE 377 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el-g~pfi~vs~sdf~~ 377 (845)
.++++|+||+|++++|+.|.+.+.+ +++++.|.. +..+|+|+|||||||||||++|+++|+++ +.+|+.++++++..
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 6789999999999999999998876 778887763 46678999999999999999999999999 89999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCC
Q 043051 378 MFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLD 457 (845)
Q Consensus 378 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd 457 (845)
.++|.+...++.+|..++..+||||||||||.++.+|+.. ........++++|..|+++.....+++||++||+++
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN----ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC----CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc----cchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 9999999999999999999999999999999998877532 234456778899999999876567799999999999
Q ss_pred CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHc
Q 043051 458 ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARK 535 (845)
Q Consensus 458 ~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~ 535 (845)
.||++++| ||+..+.+++|+.++|.+||+.+++..+... .+.++..||+.|.||+|+||.++|++|++.|.++
T Consensus 161 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 161 VLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSL---TEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp TSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCC---CHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred cCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999998766543 4678999999999999999999999999888764
No 17
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.9e-35 Score=313.39 Aligned_cols=248 Identities=49% Similarity=0.783 Sum_probs=227.3
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH
Q 043051 299 ETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE 377 (845)
Q Consensus 299 ~~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~ 377 (845)
..++++|++++|++++++.|.+.+.. +..++.|..+|...++++||+||||||||++|+++|++++.+++.++++++..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 46789999999999999999998876 88999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCC
Q 043051 378 MFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLD 457 (845)
Q Consensus 378 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd 457 (845)
.+.|.....++.+|..++...|+||||||+|.+..++.. ...++..+.+..+.+++..++++.... +++||+|||.++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~~~~~-~~~vI~ttn~~~ 167 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTD-ALTGGDREVQRTLMQLLAEMDGFDARG-DVKIIGATNRPD 167 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSS-SCCGGGGHHHHHHHHHHHHHHTTCSSS-SEEEEEECSCGG
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCcc-ccCCccHHHHHHHHHHHHHhhCCCCCC-CEEEEEeCCCch
Confidence 999999999999999999999999999999999887753 233446677889999999998876544 499999999999
Q ss_pred CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCC
Q 043051 458 ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDL 537 (845)
Q Consensus 458 ~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~ 537 (845)
.+|++++|++||+..+.++.|+.++|.+|++.+++...+. .+.++..++..+.|++++++.++|++|...|.+++.
T Consensus 168 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~----~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~ 243 (285)
T 3h4m_A 168 ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA----EDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELR 243 (285)
T ss_dssp GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC----TTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC----CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999998876655 566789999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHhc
Q 043051 538 DYIGQEELLEALKRQ 552 (845)
Q Consensus 538 ~~It~edl~~Al~r~ 552 (845)
+.|+.+|+.+|+.++
T Consensus 244 ~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 244 DYVTMDDFRKAVEKI 258 (285)
T ss_dssp SSBCHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHH
Confidence 999999999999987
No 18
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=1.1e-35 Score=324.45 Aligned_cols=247 Identities=33% Similarity=0.510 Sum_probs=213.6
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH
Q 043051 299 ETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE 377 (845)
Q Consensus 299 ~~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~ 377 (845)
+.++++|+||+|++++++.|.+.+.+ ++.++.|.. +..+++++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 89 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh
Confidence 37899999999999999999998876 667776655 6678899999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCC
Q 043051 378 MFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLD 457 (845)
Q Consensus 378 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd 457 (845)
.++|.....++.+|..++...|+||||||||.+..+++... +........+++..++++.....+++||++||+++
T Consensus 90 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~----~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~ 165 (322)
T 3eie_A 90 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE----SEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW 165 (322)
T ss_dssp TTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC----------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGG
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCc----chHHHHHHHHHHHHhccccccCCceEEEEecCChh
Confidence 99999999999999999999999999999999988765321 22234556778888888765666799999999999
Q ss_pred CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCC
Q 043051 458 ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDL 537 (845)
Q Consensus 458 ~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~ 537 (845)
.||++++| ||+..+.+++|+.++|.+||+.++...+... .+.++..++..+.||+|+||.++|++|++.|.++..
T Consensus 166 ~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~ 240 (322)
T 3eie_A 166 QLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVL---TKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQ 240 (322)
T ss_dssp GSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCC---CHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHH
T ss_pred hCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCC---CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999 9999999999999999999999998766543 467899999999999999999999999988877531
Q ss_pred -------------------------------------------CccCHHHHHHHHHhcccc
Q 043051 538 -------------------------------------------DYIGQEELLEALKRQKGT 555 (845)
Q Consensus 538 -------------------------------------------~~It~edl~~Al~r~k~~ 555 (845)
..|+++||.+|+..++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps 301 (322)
T 3eie_A 241 SATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPT 301 (322)
T ss_dssp HCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCS
T ss_pred hhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCC
Confidence 249999999999998543
No 19
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=1.1e-34 Score=304.87 Aligned_cols=244 Identities=56% Similarity=0.874 Sum_probs=216.3
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhh
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMF 379 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~ 379 (845)
.++++|+|++|.++++.++.+++..+.++..+...+...|+|++|+||||||||+|++++|+.++.+++.+++.++...+
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 89 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 89 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHH
Confidence 67899999999999999999999999899999999999999999999999999999999999999999999999998888
Q ss_pred hhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCC
Q 043051 380 VGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDIL 459 (845)
Q Consensus 380 vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~L 459 (845)
.+.....++.+|+.+....|+++||||+|.++..+.. ..+..+.+....+++++.+++|..... .++++++||+|+.|
T Consensus 90 ~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~-~~~~~~~~~~~~~~~ll~~l~g~~~~~-~~i~~a~t~~p~~l 167 (254)
T 1ixz_A 90 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGS-GVGGGNDEREQTLNQLLVEMDGFEKDT-AIVVMAATNRPDIL 167 (254)
T ss_dssp TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC----------CHHHHHHHHHHHHHHHTCCTTC-CEEEEEEESCGGGS
T ss_pred hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCc-cccccchHHHHHHHHHHHHHhCCCCCC-CEEEEEccCCchhC
Confidence 8888889999999998778999999999999877642 222345667788899999999876543 48999999999999
Q ss_pred ChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCCc
Q 043051 460 DPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDLDY 539 (845)
Q Consensus 460 DpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~~~ 539 (845)
|++++|++||++.+.++.|+.++|.+||+.+++...+. .+.++..+|..++|++|+||.++|++|+..|.+++...
T Consensus 168 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~----~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~ 243 (254)
T 1ixz_A 168 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA----EDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRK 243 (254)
T ss_dssp CGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBC----TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCC----cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999988766554 56678899999999999999999999999999988889
Q ss_pred cCHHHHHHHH
Q 043051 540 IGQEELLEAL 549 (845)
Q Consensus 540 It~edl~~Al 549 (845)
|+.+|+++|+
T Consensus 244 I~~~dl~~a~ 253 (254)
T 1ixz_A 244 ITMKDLEEAA 253 (254)
T ss_dssp BCHHHHHHHT
T ss_pred cCHHHHHHHh
Confidence 9999999886
No 20
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=1.6e-34 Score=320.16 Aligned_cols=246 Identities=33% Similarity=0.499 Sum_probs=207.5
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH
Q 043051 299 ETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE 377 (845)
Q Consensus 299 ~~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~ 377 (845)
+.++++|+||+|++++++.|.+.+.+ ++.++.|.. +..+++++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 44 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~ 122 (355)
T 2qp9_X 44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 122 (355)
T ss_dssp ---CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHS
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhh
Confidence 36789999999999999999998876 678887765 6788899999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCC
Q 043051 378 MFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLD 457 (845)
Q Consensus 378 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd 457 (845)
.+.|.....++.+|..++...||||||||||.+...|+.. .+.......+++|..|+++.....+++||++||+++
T Consensus 123 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~----~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~ 198 (355)
T 2qp9_X 123 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG----ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW 198 (355)
T ss_dssp CC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC----------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGG
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC----cchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcc
Confidence 9999999999999999999999999999999998776422 234455667788888888765566799999999999
Q ss_pred CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcC-
Q 043051 458 ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKD- 536 (845)
Q Consensus 458 ~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~- 536 (845)
.||++++| ||+..+.+++|+.++|.+||+.+++..+... .+.++..||+.+.||+|+||.++|++|++.|.++.
T Consensus 199 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~---~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~ 273 (355)
T 2qp9_X 199 QLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVL---TKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQ 273 (355)
T ss_dssp GSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999998766433 46789999999999999999999999999988752
Q ss_pred ------------------------------------------CCccCHHHHHHHHHhccc
Q 043051 537 ------------------------------------------LDYIGQEELLEALKRQKG 554 (845)
Q Consensus 537 ------------------------------------------~~~It~edl~~Al~r~k~ 554 (845)
...|+++||..|+.++++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~p 333 (355)
T 2qp9_X 274 SATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRP 333 (355)
T ss_dssp HCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCC
T ss_pred HhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCC
Confidence 124999999999999853
No 21
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=1.2e-33 Score=301.58 Aligned_cols=255 Identities=55% Similarity=0.863 Sum_probs=220.2
Q ss_pred cccccccccccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC
Q 043051 287 LGKSRAKFISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVP 366 (845)
Q Consensus 287 ~~~s~a~~~~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~p 366 (845)
+.+++...+.. .++++|+||+|.+++++++.+++..+..+..+...+...|+|++|+||||||||+|++++++.++.+
T Consensus 23 ~~~~~~~~~~~--~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~ 100 (278)
T 1iy2_A 23 FTKSRARVLTE--APKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP 100 (278)
T ss_dssp ---CCCCCBCC--CCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred ccccccccccC--CCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCC
Confidence 45555544432 4889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeechhHHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCc
Q 043051 367 FFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQ 446 (845)
Q Consensus 367 fi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ 446 (845)
++.+++.++.+.+.+.....++.+|+.+....|+++||||+|.++..+.. .......+....+.+++.++++..... .
T Consensus 101 ~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~-~~~~~~~~~~~~~~~ll~~lsgg~~~~-~ 178 (278)
T 1iy2_A 101 FITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGS-GVGGGNDEREQTLNQLLVEMDGFEKDT-A 178 (278)
T ss_dssp EEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC---------CHHHHHHHHHHHHHHTTCCTTC-C
T ss_pred EEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhccccc-ccCCcchHHHHHHHHHHHHHhCCCCCC-C
Confidence 99999999988888888888999999998778999999999999876542 222345667788999999999876433 4
Q ss_pred EEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHH
Q 043051 447 VLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILN 526 (845)
Q Consensus 447 ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~Lvn 526 (845)
++++++||+|+.||++++|++||++.+.++.|+.++|.+||+.+++...+. .+.++..+|..++|++|+||.++|+
T Consensus 179 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~----~~~~~~~la~~~~G~~~~dl~~l~~ 254 (278)
T 1iy2_A 179 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA----EDVDLALLAKRTPGFVGADLENLLN 254 (278)
T ss_dssp EEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBC----TTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCC----cccCHHHHHHHcCCCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999988765554 4567889999999999999999999
Q ss_pred HHHHHHHHcCCCccCHHHHHHHH
Q 043051 527 EAGILTARKDLDYIGQEELLEAL 549 (845)
Q Consensus 527 eAal~A~r~~~~~It~edl~~Al 549 (845)
+|+..|.+++...|+.+|+.+|+
T Consensus 255 ~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 255 EAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHHhCCCCcCHHHHHHHh
Confidence 99999998888889999999886
No 22
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=9.5e-37 Score=322.33 Aligned_cols=250 Identities=55% Similarity=0.837 Sum_probs=217.5
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHh
Q 043051 299 ETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM 378 (845)
Q Consensus 299 ~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~ 378 (845)
+.++++|++++|++++++.|.+++.++..++.|..+|...|+|+||+||||||||++|+++|++++.||+.++++++.+.
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCC
Q 043051 379 FVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDI 458 (845)
Q Consensus 379 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~ 458 (845)
+.|.+...++.+|..+....|+||||||+|.+..++...+....+......+++++..++++.....+++||++||.++.
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ 163 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEI 163 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTT
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchh
Confidence 88888888999999999889999999999999876642222222333344567788888887655666999999999999
Q ss_pred CChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCC
Q 043051 459 LDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDLD 538 (845)
Q Consensus 459 LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~~ 538 (845)
||++++|+|||+..+.++.|+.++|.+||+.+++...+. .+.++..++..+.||+|+||.++|++|++.|..++..
T Consensus 164 ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~----~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~ 239 (268)
T 2r62_A 164 LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA----NDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQK 239 (268)
T ss_dssp SCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC----SSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCC
T ss_pred cCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC----CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999988765544 4556788999999999999999999999999888778
Q ss_pred ccCHHHHHHHHHhc
Q 043051 539 YIGQEELLEALKRQ 552 (845)
Q Consensus 539 ~It~edl~~Al~r~ 552 (845)
.|+.+++.+++.+.
T Consensus 240 ~i~~~~~~~a~~~~ 253 (268)
T 2r62_A 240 EVRQQHLKEAVERG 253 (268)
T ss_dssp SCCHHHHHTSCTTC
T ss_pred CcCHHHHHHHHHHH
Confidence 99999999998877
No 23
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=2.4e-33 Score=319.72 Aligned_cols=227 Identities=36% Similarity=0.543 Sum_probs=192.4
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-CCCeEEeechhHH
Q 043051 299 ETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA-GVPFFAANGTDFV 376 (845)
Q Consensus 299 ~~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el-g~pfi~vs~sdf~ 376 (845)
+.++++|+||+|++.+++.|.+.+.+ ++.+..|.. +..+|+++||+||||||||+||+++|+++ +.+|+.++++++.
T Consensus 127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 37889999999999999999998765 677776653 35678999999999999999999999999 8999999999999
Q ss_pred HhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCC
Q 043051 377 EMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRL 456 (845)
Q Consensus 377 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~p 456 (845)
..++|.....++.+|..++...|+||||||||.+...|+.. ........++++|..|+++.....+++||+|||++
T Consensus 206 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~ 281 (444)
T 2zan_A 206 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN----ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIP 281 (444)
T ss_dssp ------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC----CCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCG
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc----cccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCc
Confidence 99999999999999999999999999999999998776532 23344567788999999987656679999999999
Q ss_pred CCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHc
Q 043051 457 DILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARK 535 (845)
Q Consensus 457 d~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~ 535 (845)
+.||++++| ||+..+.+++|+.++|..||+.++...+... .+.++..||..+.||+|+||.++|++|++.|.++
T Consensus 282 ~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 282 WVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSL---TEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp GGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEEC---CHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred cccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999 9999999999999999999999998766543 4678999999999999999999999999888764
No 24
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=4.4e-33 Score=320.99 Aligned_cols=246 Identities=39% Similarity=0.646 Sum_probs=218.8
Q ss_pred CCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHh
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM 378 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~ 378 (845)
...++|++|+|++.+++.|.+.+.. +++++.|..+|+.+|+++||+||||||||++|+++|++++.||+.++|+++.+.
T Consensus 198 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~ 277 (489)
T 3hu3_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (489)
T ss_dssp HTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTS
T ss_pred cCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhh
Confidence 3578999999999999999999887 789999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCC
Q 043051 379 FVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDI 458 (845)
Q Consensus 379 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~ 458 (845)
+.|.....++.+|..|....||||||||||.+..+++. .........+.+||..|++.... .+++||+|||+++.
T Consensus 278 ~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~----~~~~~~~~~~~~LL~~ld~~~~~-~~v~vIaaTn~~~~ 352 (489)
T 3hu3_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK----THGEVERRIVSQLLTLMDGLKQR-AHVIVMAATNRPNS 352 (489)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTS----CCCHHHHHHHHHHHHHHHHSCTT-SCEEEEEEESCGGG
T ss_pred hcchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccc----ccchHHHHHHHHHHHHhhccccC-CceEEEEecCCccc
Confidence 99999999999999999999999999999999887642 12334455666777777766543 45999999999999
Q ss_pred CChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCC
Q 043051 459 LDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDLD 538 (845)
Q Consensus 459 LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~~ 538 (845)
||++++|+|||++.+.++.|+.++|.+||+.+++...+. .+.++..++..+.||+|+||.++|++|++.|.++..+
T Consensus 353 Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~----~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~ 428 (489)
T 3hu3_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA----DDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428 (489)
T ss_dssp BCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC----TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTT
T ss_pred cCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc----chhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999877665 5667899999999999999999999999999887643
Q ss_pred -----------------ccCHHHHHHHHHhccc
Q 043051 539 -----------------YIGQEELLEALKRQKG 554 (845)
Q Consensus 539 -----------------~It~edl~~Al~r~k~ 554 (845)
.|+++||..|+.+..+
T Consensus 429 ~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~p 461 (489)
T 3hu3_A 429 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNP 461 (489)
T ss_dssp TCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHH
T ss_pred cccccccccchhhcccCcCCHHHHHHHHHhCCc
Confidence 4788999999888744
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.98 E-value=3.6e-31 Score=293.25 Aligned_cols=245 Identities=32% Similarity=0.513 Sum_probs=209.2
Q ss_pred CCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHh
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM 378 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~ 378 (845)
.++++|+||+|++.+++.|.+.+.. +..+..|...+ ..++++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 6789999999999999999998876 67777666554 678999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcc-cCCcEEEEEEcCCCC
Q 043051 379 FVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKV-STSQVLVIGATNRLD 457 (845)
Q Consensus 379 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~-~~~~ViVIaaTN~pd 457 (845)
+.|.....++.+|..+....|+||||||||.+...+.. +.+......+.++|..+++... ...+++||++||+++
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~----~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~ 232 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD----GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ 232 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC----------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGG
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC----CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChh
Confidence 99999999999999999889999999999999876642 2233455667788888887653 245699999999999
Q ss_pred CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcC-
Q 043051 458 ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKD- 536 (845)
Q Consensus 458 ~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~- 536 (845)
.||++++| ||+..+.++.|+.++|.+|++.+++..+... .+.++..++..+.||+|+||..+|++|+..+.++.
T Consensus 233 ~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l---~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~ 307 (357)
T 3d8b_A 233 EIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCL---SEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQ 307 (357)
T ss_dssp GBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCC
T ss_pred hCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCc---cHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 99999999 9999999999999999999999998765443 45679999999999999999999999998888742
Q ss_pred -----------CCccCHHHHHHHHHhccc
Q 043051 537 -----------LDYIGQEELLEALKRQKG 554 (845)
Q Consensus 537 -----------~~~It~edl~~Al~r~k~ 554 (845)
...|+.+||..|+.++++
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~al~~~~p 336 (357)
T 3d8b_A 308 TADIATITPDQVRPIAYIDFENAFRTVRP 336 (357)
T ss_dssp C----------CCCBCHHHHHHHHHHHGG
T ss_pred hhhhccccccccCCcCHHHHHHHHHhcCC
Confidence 357999999999999854
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.97 E-value=5.2e-31 Score=282.44 Aligned_cols=245 Identities=34% Similarity=0.521 Sum_probs=204.2
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH
Q 043051 299 ETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE 377 (845)
Q Consensus 299 ~~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~ 377 (845)
+.++++|++++|++.+++.|.+.+.. +.+++.|...+ .+++++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 14 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 92 (297)
T 3b9p_A 14 GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS 92 (297)
T ss_dssp CSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSS
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhh
Confidence 36789999999999999999998766 56677666554 46789999999999999999999999999999999999998
Q ss_pred hhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCccc--CCcEEEEEEcCC
Q 043051 378 MFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVS--TSQVLVIGATNR 455 (845)
Q Consensus 378 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~--~~~ViVIaaTN~ 455 (845)
.+.|.+...++.+|..+....|+||||||+|.+...+.... ... ......+++..++++... ..+++||++||+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~---~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~ 168 (297)
T 3b9p_A 93 KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE-HEA---SRRLKTEFLVEFDGLPGNPDGDRIVVLAATNR 168 (297)
T ss_dssp SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC------CC---SHHHHHHHHHHHHHCC------CEEEEEEESC
T ss_pred cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc-chH---HHHHHHHHHHHHhcccccCCCCcEEEEeecCC
Confidence 88898899999999999999999999999999987764221 111 233445566666655432 245999999999
Q ss_pred CCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHc
Q 043051 456 LDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARK 535 (845)
Q Consensus 456 pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~ 535 (845)
++.||++++| ||+..+.+++|+.++|..|++.+++..+... .+.++..++..+.|++|++|.++|++|+..+.++
T Consensus 169 ~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~ 243 (297)
T 3b9p_A 169 PQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPL---DTEALRRLAKITDGYSGSDLTALAKDAALEPIRE 243 (297)
T ss_dssp GGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCS---CHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHT
T ss_pred hhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999999999999999999998765432 4567899999999999999999999999998876
Q ss_pred C------------CCccCHHHHHHHHHhcc
Q 043051 536 D------------LDYIGQEELLEALKRQK 553 (845)
Q Consensus 536 ~------------~~~It~edl~~Al~r~k 553 (845)
. ...|+.+||..|+.+++
T Consensus 244 ~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 273 (297)
T 3b9p_A 244 LNVEQVKCLDISAMRAITEQDFHSSLKRIR 273 (297)
T ss_dssp CC--------CCCCCCCCHHHHHHHTTSCC
T ss_pred HhhhhcccccccccCCcCHHHHHHHHHHcC
Confidence 4 24799999999998874
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.97 E-value=1.9e-30 Score=290.16 Aligned_cols=246 Identities=37% Similarity=0.563 Sum_probs=198.1
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHH
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFV 376 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~ 376 (845)
...++++|+||+|++.+++.|.+.+.. +..++.|...+ .+++++||+||||||||++|+++|.+++.+|+.++|+++.
T Consensus 107 ~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 185 (389)
T 3vfd_A 107 DNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLT 185 (389)
T ss_dssp CCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-
T ss_pred ccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhh
Confidence 346889999999999999999998766 55666666555 4579999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcc-cCCcEEEEEEcCC
Q 043051 377 EMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKV-STSQVLVIGATNR 455 (845)
Q Consensus 377 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~-~~~~ViVIaaTN~ 455 (845)
..+.|.....++.+|..++...|+||||||||.++..+... ........+..++..++++.. ...+++||++||+
T Consensus 186 ~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~ 261 (389)
T 3vfd_A 186 SKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG----EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNR 261 (389)
T ss_dssp ------CHHHHHHHHHHHHHSSSEEEEEETGGGGC------------CTHHHHHHHHHHHHHHHC-----CEEEEEEESC
T ss_pred ccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc----cchHHHHHHHHHHHHhhcccccCCCCEEEEEecCC
Confidence 99999999999999999999999999999999998765421 122334555667777776554 2456999999999
Q ss_pred CCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHc
Q 043051 456 LDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARK 535 (845)
Q Consensus 456 pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~ 535 (845)
++.||++++| ||+..+.++.|+.++|.+||+.++...+... .+.++..++..+.|+++++|..+++.|+..+.++
T Consensus 262 ~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l---~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~re 336 (389)
T 3vfd_A 262 PQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPL---TQKELAQLARMTDGYSGSDLTALAKDAALGPIRE 336 (389)
T ss_dssp GGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCS---CHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHT
T ss_pred chhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999 9999999999999999999999987765543 4567899999999999999999999999988876
Q ss_pred ------------CCCccCHHHHHHHHHhcc
Q 043051 536 ------------DLDYIGQEELLEALKRQK 553 (845)
Q Consensus 536 ------------~~~~It~edl~~Al~r~k 553 (845)
....|+.+||..++.+..
T Consensus 337 l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 366 (389)
T 3vfd_A 337 LKPEQVKNMSASEMRNIRLSDFTESLKKIK 366 (389)
T ss_dssp SCCC---CCSSSCCCCCCHHHHHHHHHHCC
T ss_pred hhhhhhhccchhhcCCcCHHHHHHHHHHcC
Confidence 335799999999999873
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=5.2e-33 Score=337.97 Aligned_cols=231 Identities=44% Similarity=0.751 Sum_probs=202.2
Q ss_pred CCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHh
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM 378 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~ 378 (845)
.+.++|+|++|++++|+.|.+++.+ ++.+..|..++..+++++||+||||||||+||+++|++++.+|+.++++++..+
T Consensus 471 ~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~ 550 (806)
T 1ypw_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTC
T ss_pred CccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhh
Confidence 6789999999999999999998876 677888889999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCC
Q 043051 379 FVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDI 458 (845)
Q Consensus 379 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~ 458 (845)
|+|.....++.+|+.|+...||||||||||.++..|+.. .+..+......++++|..||++.... +++||+|||+++.
T Consensus 551 ~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~-~~~~~~~~~~v~~~LL~~ld~~~~~~-~v~vI~tTN~~~~ 628 (806)
T 1ypw_A 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN-IGDGGGAADRVINQILTEMDGMSTKK-NVFIIGATNRPDI 628 (806)
T ss_dssp CTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTC-CSHHHHHHHHHHHHHHTTCC-------CCBCCCCCBSCGG
T ss_pred hcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCC-CCCcchhHHHHHHHHHHHHhcccccC-CeEEEEecCCccc
Confidence 999999999999999999999999999999998877522 11223456678899999999986544 4999999999999
Q ss_pred CChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcC
Q 043051 459 LDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKD 536 (845)
Q Consensus 459 LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~ 536 (845)
||++++|||||+..|++++|+.++|.+||+.+++..++. .+.++..+++.+.||||+||.++|++|+..|.++.
T Consensus 629 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~----~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA----KDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp GSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC--------CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred CCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCC----cccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998876654 56778899999999999999999999999998875
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.96 E-value=3.6e-30 Score=277.98 Aligned_cols=236 Identities=18% Similarity=0.238 Sum_probs=156.7
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhhhhhhhhhHHHHHHHH----HhcCCcEEEEcccch
Q 043051 334 KGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASA----RSFAPSIIFIDEIDA 409 (845)
Q Consensus 334 ~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~vG~~~~~vr~lF~~A----~~~aP~ILfIDEIDa 409 (845)
.+.+.|+++|||||||||||+||+++|++++.+|+.++++++.+.++|.....++.+|..| +...||||||||||.
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 4678899999999999999999999999999999999999999999999999999999999 577899999999999
Q ss_pred hccCCCCCCCC-CCchHHHHHHHHHHHhh-----cCC--cccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHh
Q 043051 410 IGSKRGGPDIG-GGGAEREQGLLQILTEM-----DGF--KVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKD 481 (845)
Q Consensus 410 L~~~R~~~~~~-~~~~e~~~~L~qLL~em-----dg~--~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~e 481 (845)
++.++++.... ..+......|+++|+.. +++ .....+++||+|||+++.||++++|||||++.+. .|+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~ 188 (293)
T 3t15_A 111 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 188 (293)
T ss_dssp -------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHH
T ss_pred hcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHH
Confidence 98755421111 12234446666665422 111 1133469999999999999999999999998886 57999
Q ss_pred HHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHH--HHH-HHHHHHcCCCccCHHHHHHHHHhccccccc
Q 043051 482 GRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNIL--NEA-GILTARKDLDYIGQEELLEALKRQKGTFET 558 (845)
Q Consensus 482 eR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~Lv--neA-al~A~r~~~~~It~edl~~Al~r~k~~~~~ 558 (845)
+|.+|++.++... +.+...++..+.||++++|..+. +.. .-.+.++-...+..+.+...+-+
T Consensus 189 ~r~~Il~~~~~~~--------~~~~~~l~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~~~~~g~~~~~~~~~~------- 253 (293)
T 3t15_A 189 DRIGVCTGIFRTD--------NVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLN------- 253 (293)
T ss_dssp HHHHHHHHHHGGG--------CCCHHHHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHTCSTTCHHHHTS-------
T ss_pred HHHHHHHHhccCC--------CCCHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHc-------
Confidence 9999999887653 34477889999999999886421 100 00000000001112222222211
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHHh
Q 043051 559 GQEDSTDIPEELKLRLAYREAAVAVLAC 586 (845)
Q Consensus 559 g~e~~~~ls~~ek~~iA~hEaGhAlv~~ 586 (845)
+......+.+......++||+||+++..
T Consensus 254 ~~~~~~~~~~~~~~~~~l~~~g~~~~~e 281 (293)
T 3t15_A 254 SFDGPPTFEQPKMTIEKLLEYGNMLVQE 281 (293)
T ss_dssp CSSCSCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccccHHHHHHHHHHHHHH
Confidence 1122233444566678999999999864
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.95 E-value=6.4e-27 Score=284.55 Aligned_cols=246 Identities=39% Similarity=0.644 Sum_probs=216.1
Q ss_pred CCCCCcccccccHHHHHHHHHHHHH-hhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHh
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM 378 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~ 378 (845)
.+.++|+||+|++++++.|.+.+.. +++++.|..+++.++.++||+||||||||+||+++|++++.+|+.++|+++...
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 5679999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCC
Q 043051 379 FVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDI 458 (845)
Q Consensus 379 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~ 458 (845)
+.|.....++.+|+.+....|+++||||||.+..+++. .........+.+++..++++.... .+++|++||+++.
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~----~~~~~~~~~~~~Ll~ll~g~~~~~-~v~vI~atn~~~~ 352 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK----THGEVERRIVSQLLTLMDGLKQRA-HVIVMAATNRPNS 352 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSC----CCSHHHHHHHHHHHHHHHSSCTTS-CCEEEEECSCTTT
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccc----ccchHHHHHHHHHHHHhhhhcccc-cEEEecccCCchh
Confidence 99999999999999999989999999999999877642 123344556677788888876544 4999999999999
Q ss_pred CChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCC
Q 043051 459 LDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDLD 538 (845)
Q Consensus 459 LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~~ 538 (845)
+|+++.+++||++.+.++.|+.++|.+||+.+++...+. .+.++..++..+.||+++++..++++|+..+.++...
T Consensus 353 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~----~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~ 428 (806)
T 1ypw_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA----DDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428 (806)
T ss_dssp SCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC----TTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCc----ccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999999988876655 5567889999999999999999999999888765432
Q ss_pred -----------------ccCHHHHHHHHHhccc
Q 043051 539 -----------------YIGQEELLEALKRQKG 554 (845)
Q Consensus 539 -----------------~It~edl~~Al~r~k~ 554 (845)
.++.+++..++....+
T Consensus 429 ~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~ 461 (806)
T 1ypw_A 429 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNP 461 (806)
T ss_dssp TTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCC
T ss_pred ccchhhhccchhhhhhhhhhhhhhhccccccCc
Confidence 3667788888877643
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.91 E-value=9.2e-25 Score=249.54 Aligned_cols=172 Identities=24% Similarity=0.318 Sum_probs=127.9
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC--CCeEEeechhHHH
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAG--VPFFAANGTDFVE 377 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg--~pfi~vs~sdf~~ 377 (845)
.+...|++++|++++++.+.+++..++. |..+|+++||+||||||||++|+++|++++ ++|+.++++++..
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~-------~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELIKS-------KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHHHh-------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 4566799999999999999998877643 455789999999999999999999999999 9999999999999
Q ss_pred hhhhhhhhhHHHHHHHH---HhcCCcEEEEcccchhccCCCCCCCCCCchHHHHH---------------HHHHHHhhcC
Q 043051 378 MFVGVAASRVKDLFASA---RSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQG---------------LLQILTEMDG 439 (845)
Q Consensus 378 ~~vG~~~~~vr~lF~~A---~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~---------------L~qLL~emdg 439 (845)
.++|.+.. ++.+|..| +...||||||||+|.++.+|+....++........ ..+++..++.
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99998887 99999999 77889999999999999988643222111111111 1224444431
Q ss_pred CcccCCc-EEEEEEcCCCCCCChhhhccCcccE--EEEeCCCC
Q 043051 440 FKVSTSQ-VLVIGATNRLDILDPALLRKGRFDK--IVRVGLPS 479 (845)
Q Consensus 440 ~~~~~~~-ViVIaaTN~pd~LDpALlRpgRFdr--~I~v~~Pd 479 (845)
.....+. ++|++|||+++.+|+++.|+||||+ .+.++.|+
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~ 225 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPK 225 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCC
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCc
Confidence 1112233 5555888999999999999999988 55666664
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.89 E-value=2.2e-22 Score=216.15 Aligned_cols=225 Identities=20% Similarity=0.264 Sum_probs=171.2
Q ss_pred cc-cccccHHHHHHHHHHHHHhhCcHHHhhcCCCC---CceEEEEcCCCChHHHHHHHHHHhc-------CCCeEEeech
Q 043051 305 FD-DFAGQEYIKRELQEIVRILKNDEEFQNKGIYC---PKGVLLHGPPGTGKTLLAKAIAGEA-------GVPFFAANGT 373 (845)
Q Consensus 305 F~-dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~---PrgVLL~GPPGTGKT~LArALA~el-------g~pfi~vs~s 373 (845)
++ +|+|++.+++.|.+++..+..+..+...|... +.++||+||||||||++|+++|+.+ ..+++.++++
T Consensus 29 l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 29 LDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred HHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 44 79999999999999998877677777766544 4579999999999999999999987 3499999999
Q ss_pred hHHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEc
Q 043051 374 DFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGAT 453 (845)
Q Consensus 374 df~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaT 453 (845)
++...+.|.....++.+|..+ .++||||||+|.++..++. ...+......|++++.+ ...++++|++|
T Consensus 109 ~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~---~~~~~~~~~~Ll~~l~~------~~~~~~~i~~~ 176 (309)
T 3syl_A 109 DLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE---RDYGQEAIEILLQVMEN------NRDDLVVILAG 176 (309)
T ss_dssp GTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC------CCTHHHHHHHHHHHHH------CTTTCEEEEEE
T ss_pred HhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc---ccccHHHHHHHHHHHhc------CCCCEEEEEeC
Confidence 999999998888899999887 4689999999999765432 12244455555555554 23458899999
Q ss_pred CCCC-----CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHc-------cCCcHHHH
Q 043051 454 NRLD-----ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELT-------EDFTGAEL 521 (845)
Q Consensus 454 N~pd-----~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t-------~GfSgaDL 521 (845)
|.+. .++|+|++ ||+.++.|+.|+.+++.+|++.++...+... .+..+..++... ..-+++++
T Consensus 177 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~---~~~~~~~l~~~~~~~~~~~~~gn~r~l 251 (309)
T 3syl_A 177 YADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQM---TPEAETALRAYIGLRRNQPHFANARSI 251 (309)
T ss_dssp CHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEE---CHHHHHHHHHHHHHHTTSSSCCHHHHH
T ss_pred ChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHhccCCCCCcHHHH
Confidence 8754 25799999 9999999999999999999999998766554 334455555542 22258899
Q ss_pred HHHHHHHHHHHHHc----CCCccCHHHHH
Q 043051 522 QNILNEAGILTARK----DLDYIGQEELL 546 (845)
Q Consensus 522 ~~LvneAal~A~r~----~~~~It~edl~ 546 (845)
.++++.|...+..+ ....++.+++.
T Consensus 252 ~~~l~~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 252 RNALDRARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCHHHHh
Confidence 99999998765543 33556666654
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.89 E-value=1.3e-22 Score=223.31 Aligned_cols=221 Identities=19% Similarity=0.294 Sum_probs=168.8
Q ss_pred CCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC--CCeEEeechhHHHh
Q 043051 301 TGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAG--VPFFAANGTDFVEM 378 (845)
Q Consensus 301 ~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg--~pfi~vs~sdf~~~ 378 (845)
+..+|++++|++.+++.+..+...+.. |..+++++||+||||||||++|+++|++++ .||+.+++..+...
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~~~-------~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 111 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMIRE-------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCS
T ss_pred cCcchhhccChHHHHHHHHHHHHHHHc-------CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhc
Confidence 344599999999999998888877654 333468999999999999999999999987 48999888764322
Q ss_pred hh-------------------------------------------------hhhhhhHHHHHHHHHh---------cCCc
Q 043051 379 FV-------------------------------------------------GVAASRVKDLFASARS---------FAPS 400 (845)
Q Consensus 379 ~v-------------------------------------------------G~~~~~vr~lF~~A~~---------~aP~ 400 (845)
+. |.....++..+..+.. ..|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 191 (368)
T 3uk6_A 112 EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG 191 (368)
T ss_dssp SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCc
Confidence 11 1224456666665533 1278
Q ss_pred EEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEc-----------CCCCCCChhhhccCcc
Q 043051 401 IIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGAT-----------NRLDILDPALLRKGRF 469 (845)
Q Consensus 401 ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaT-----------N~pd~LDpALlRpgRF 469 (845)
||||||+|.+. .+..+.|+.++.+ ...+++++++. |.+..++++|++ ||
T Consensus 192 vl~IDEi~~l~------------~~~~~~L~~~le~------~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~ 251 (368)
T 3uk6_A 192 VLFIDEVHMLD------------IESFSFLNRALES------DMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RL 251 (368)
T ss_dssp EEEEESGGGSB------------HHHHHHHHHHTTC------TTCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TE
T ss_pred eEEEhhccccC------------hHHHHHHHHHhhC------cCCCeeeeecccceeeeeccCCCCcccCCHHHHh--hc
Confidence 99999999982 3445555555433 22335555554 357789999999 88
Q ss_pred cEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 043051 470 DKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEAL 549 (845)
Q Consensus 470 dr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al 549 (845)
.. +.|++|+.+++.+|++..+...+... ++..++.+++.+.+.+++++.++++.|+..|..++...|+.+++.+++
T Consensus 252 ~~-i~~~~~~~~e~~~il~~~~~~~~~~~---~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~ 327 (368)
T 3uk6_A 252 LI-VSTTPYSEKDTKQILRIRCEEEDVEM---SEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVY 327 (368)
T ss_dssp EE-EEECCCCHHHHHHHHHHHHHHTTCCB---CHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred cE-EEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 65 89999999999999999988755543 456788999999845999999999999999999998999999999999
Q ss_pred Hhc
Q 043051 550 KRQ 552 (845)
Q Consensus 550 ~r~ 552 (845)
...
T Consensus 328 ~~~ 330 (368)
T 3uk6_A 328 SLF 330 (368)
T ss_dssp HHS
T ss_pred HHh
Confidence 874
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.89 E-value=1.7e-21 Score=212.41 Aligned_cols=222 Identities=24% Similarity=0.298 Sum_probs=174.8
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE 377 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~ 377 (845)
++..+.+|++++|++.+++.+...+...+. ....+.++||+||||||||++|+++|++++.+|+.++|+.+.
T Consensus 21 ~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~- 92 (338)
T 3pfi_A 21 TSLRPSNFDGYIGQESIKKNLNVFIAAAKK-------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE- 92 (338)
T ss_dssp --CCCCSGGGCCSCHHHHHHHHHHHHHHHH-------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC-
T ss_pred hccCCCCHHHhCChHHHHHHHHHHHHHHHh-------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc-
Confidence 457788999999999999999888876532 123467899999999999999999999999999999997652
Q ss_pred hhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcC------------CcccCC
Q 043051 378 MFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDG------------FKVSTS 445 (845)
Q Consensus 378 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg------------~~~~~~ 445 (845)
....+..++.. ...+++|||||||.+ ....+..|+..+.+-.. ......
T Consensus 93 -----~~~~~~~~~~~--~~~~~vl~lDEi~~l------------~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T 3pfi_A 93 -----KSGDLAAILTN--LSEGDILFIDEIHRL------------SPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP 153 (338)
T ss_dssp -----SHHHHHHHHHT--CCTTCEEEEETGGGC------------CHHHHHHHHHHHHTSCC---------CCCCCCCCC
T ss_pred -----chhHHHHHHHh--ccCCCEEEEechhhc------------CHHHHHHHHHHHHhccchhhcccCccccceecCCC
Confidence 22233444433 235789999999998 24566677777765320 011112
Q ss_pred cEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHH
Q 043051 446 QVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNIL 525 (845)
Q Consensus 446 ~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~Lv 525 (845)
++++|++||+...++++|++ ||+..+.++.|+.+++..+++.++...+... .+..+..++..+.| +.+.+.+++
T Consensus 154 ~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~---~~~~~~~l~~~~~G-~~r~l~~~l 227 (338)
T 3pfi_A 154 KFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTC---EEKAALEIAKRSRS-TPRIALRLL 227 (338)
T ss_dssp CCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEE---CHHHHHHHHHTTTT-CHHHHHHHH
T ss_pred CeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHCc-CHHHHHHHH
Confidence 48999999999999999999 9999999999999999999999887765443 45567888887776 788999999
Q ss_pred HHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 526 NEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 526 neAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
..+...+...+...|+.+++..++...
T Consensus 228 ~~~~~~a~~~~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 228 KRVRDFADVNDEEIITEKRANEALNSL 254 (338)
T ss_dssp HHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCccCHHHHHHHHHHh
Confidence 999888888778889999999999875
No 35
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.85 E-value=2.4e-20 Score=201.40 Aligned_cols=222 Identities=25% Similarity=0.330 Sum_probs=171.4
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHh
Q 043051 299 ETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM 378 (845)
Q Consensus 299 ~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~ 378 (845)
+..+.+|++++|.+.+++.+.+.+...... ...+.++||+||||||||++|++++++++.+|+.++|+.+..
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~- 76 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK- 76 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHHH-------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS-
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHcc-------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC-
Confidence 356779999999999999998887654321 134678999999999999999999999999999999876522
Q ss_pred hhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc-----CC-------cccCCc
Q 043051 379 FVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD-----GF-------KVSTSQ 446 (845)
Q Consensus 379 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd-----g~-------~~~~~~ 446 (845)
...+...|..+ ...+++|||||||.+ ....+..|..++.+.. +. .....+
T Consensus 77 -----~~~l~~~l~~~-~~~~~~l~lDEi~~l------------~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 77 -----PGDLAAILANS-LEEGDILFIDEIHRL------------SRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp -----HHHHHHHHTTT-CCTTCEEEETTTTSC------------CHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred -----hHHHHHHHHHh-ccCCCEEEEECCccc------------ccchHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 12222333221 135789999999998 2445677777777632 00 001134
Q ss_pred EEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHH
Q 043051 447 VLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILN 526 (845)
Q Consensus 447 ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~Lvn 526 (845)
+++|++||.+..++++|.+ ||+.++.++.|+.+++.++++.++...+... .+..+..++..+.| +++.+.++++
T Consensus 139 ~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G-~~r~l~~~l~ 212 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRI---TEEAALEIGRRSRG-TMRVAKRLFR 212 (324)
T ss_dssp CEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCC---CHHHHHHHHHHSCS-CHHHHHHHHH
T ss_pred EEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHccC-CHHHHHHHHH
Confidence 8899999999999999998 9988999999999999999999887655443 45568889999877 6789999999
Q ss_pred HHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 527 EAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 527 eAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
.+...+...+...|+.+++..++...
T Consensus 213 ~~~~~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 213 RVRDFAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp HHTTTSTTTSCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 88777766667789999999988765
No 36
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.83 E-value=8.8e-20 Score=193.37 Aligned_cols=228 Identities=21% Similarity=0.203 Sum_probs=151.9
Q ss_pred CcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhH-HHhhhhh
Q 043051 304 TFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDF-VEMFVGV 382 (845)
Q Consensus 304 tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf-~~~~vG~ 382 (845)
...+++|.+...+.+......+. ......+...+.++||+||||||||++|+++|++++.||+.+++++. .....+.
T Consensus 31 ~~~~~i~~~~~~~~i~~~~~~l~--~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~ 108 (272)
T 1d2n_A 31 IMNGIIKWGDPVTRVLDDGELLV--QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETA 108 (272)
T ss_dssp CTTCCCCCSHHHHHHHHHHHHHH--HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHH
T ss_pred HhcCCCCccHHHHHHHHHHHHHH--HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHH
Confidence 35678898877666665322221 11223345678899999999999999999999999999999988752 1111223
Q ss_pred hhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCCh-
Q 043051 383 AASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDP- 461 (845)
Q Consensus 383 ~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDp- 461 (845)
....++.+|..+....+++|||||||.++..+... ...... .+..++..+++......+++||++||.++.+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~--~~~~~~---~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~ 183 (272)
T 1d2n_A 109 KCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG--PRFSNL---VLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEM 183 (272)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT--TBCCHH---HHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC--hhHHHH---HHHHHHHHhcCccCCCCCEEEEEecCChhhcchh
Confidence 34678889999887788999999999997654311 111222 233333445554445566899999999998887
Q ss_pred hhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCC----cHHHHHHHHHHHHHHHHHcCC
Q 043051 462 ALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDF----TGAELQNILNEAGILTARKDL 537 (845)
Q Consensus 462 ALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~Gf----SgaDL~~LvneAal~A~r~~~ 537 (845)
.+.+ ||+..+.+ |+..+|.+|.........+ .+..+..+++.+.|+ +.+++.+++..|.. ..
T Consensus 184 ~l~~--rf~~~i~~--p~l~~r~~i~~i~~~~~~~-----~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~-----~~ 249 (272)
T 1d2n_A 184 EMLN--AFSTTIHV--PNIATGEQLLEALELLGNF-----KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ-----MD 249 (272)
T ss_dssp TCTT--TSSEEEEC--CCEEEHHHHHHHHHHHTCS-----CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT-----SC
T ss_pred hhhc--ccceEEcC--CCccHHHHHHHHHHhcCCC-----CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh-----hc
Confidence 5555 99888776 4555555555544443332 356688999999886 45666666665532 22
Q ss_pred CccCHHHHHHHHHhc
Q 043051 538 DYIGQEELLEALKRQ 552 (845)
Q Consensus 538 ~~It~edl~~Al~r~ 552 (845)
.....+++..++...
T Consensus 250 ~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 250 PEYRVRKFLALLREE 264 (272)
T ss_dssp GGGHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHc
Confidence 345566676666655
No 37
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.82 E-value=1.4e-19 Score=193.40 Aligned_cols=238 Identities=26% Similarity=0.313 Sum_probs=160.5
Q ss_pred ccccccHHHHHHHHHHHHH-hhCcHHHhh-cCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH-hhhhh
Q 043051 306 DDFAGQEYIKRELQEIVRI-LKNDEEFQN-KGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE-MFVGV 382 (845)
Q Consensus 306 ~dVvG~de~k~eL~eiv~~-Lk~p~~~~~-~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~-~~vG~ 382 (845)
++|+|++++++.|...+.. +........ .+...|.++||+||||||||++|+++|+.++.+++.++|+++.+ .++|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 3589999999999877654 111110000 01235789999999999999999999999999999999998865 45553
Q ss_pred h-hhhHHHHHHHH-----HhcCCcEEEEcccchhccCCCCCCCCCCchHH---HHHHHHHHHhhcCCc-------ccCCc
Q 043051 383 A-ASRVKDLFASA-----RSFAPSIIFIDEIDAIGSKRGGPDIGGGGAER---EQGLLQILTEMDGFK-------VSTSQ 446 (845)
Q Consensus 383 ~-~~~vr~lF~~A-----~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~---~~~L~qLL~emdg~~-------~~~~~ 446 (845)
. ...++.++..+ ....++||||||+|.+...... .+..... ++.|+++++ +.. ....+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~---~~~~~~~~~~~~~Ll~~le---~~~~~~~~~~~~~~~ 168 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEY---SGADVSREGVQRDLLPLVE---GSTVSTKHGMVKTDH 168 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSC---CSSHHHHHHHHHHHHHHHH---CCEEEETTEEEECTT
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccc---cccchhHHHHHHHHHHHhc---CCeEecccccccCCc
Confidence 3 34566666533 1123689999999999765431 1112222 344444444 321 12345
Q ss_pred EEEEEE----cCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHH----H-------HhhhcccchhhhhhHHHHHHH
Q 043051 447 VLVIGA----TNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKV----H-------ARNKYFRSEEEKDVLLQEIAE 511 (845)
Q Consensus 447 ViVIaa----TN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~----~-------l~~~~l~~~~~~d~dl~~LA~ 511 (845)
+++|++ ++.+..++++|++ ||+..+.|+.|+.+++.+|++. . +...+... ..++..++.+++
T Consensus 169 ~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~l~~ 245 (310)
T 1ofh_A 169 ILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNI-AFTTDAVKKIAE 245 (310)
T ss_dssp CEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEE-EECHHHHHHHHH
T ss_pred EEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCee-ccCHHHHHHHHH
Confidence 888888 5678889999998 9998899999999999999983 1 11112110 124556777777
Q ss_pred Hcc-------CCcHHHHHHHHHHHHHHHHH-----cCCC-ccCHHHHHHHHHhc
Q 043051 512 LTE-------DFTGAELQNILNEAGILTAR-----KDLD-YIGQEELLEALKRQ 552 (845)
Q Consensus 512 ~t~-------GfSgaDL~~LvneAal~A~r-----~~~~-~It~edl~~Al~r~ 552 (845)
.+. +...+.+.++++.+...+.. .+.. .|+.+++.+++...
T Consensus 246 ~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 246 AAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSS
T ss_pred HhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhh
Confidence 662 45889999999887644332 1211 49999999998765
No 38
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.81 E-value=4.7e-20 Score=210.39 Aligned_cols=212 Identities=22% Similarity=0.274 Sum_probs=157.2
Q ss_pred ccCCCCCcccccccHHHH---HHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechh
Q 043051 298 EETTGVTFDDFAGQEYIK---RELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTD 374 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k---~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sd 374 (845)
++.++.+|++++|++.++ ..|...+.. .. +.++||+||||||||++|+++|+.++.+|+.+++..
T Consensus 18 ~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~---~~---------~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~ 85 (447)
T 3pvs_A 18 ARMRPENLAQYIGQQHLLAAGKPLPRAIEA---GH---------LHSMILWGPPGTGKTTLAEVIARYANADVERISAVT 85 (447)
T ss_dssp HHTCCCSTTTCCSCHHHHSTTSHHHHHHHH---TC---------CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT
T ss_pred HHhCCCCHHHhCCcHHHHhchHHHHHHHHc---CC---------CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc
Confidence 446788999999999998 455554432 11 258999999999999999999999999999999754
Q ss_pred HHHhhhhhhhhhHHHHHHHHHh----cCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEE
Q 043051 375 FVEMFVGVAASRVKDLFASARS----FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVI 450 (845)
Q Consensus 375 f~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVI 450 (845)
. +...++.++..+.. ..++||||||||.+.. ..+..|+..+++ +.+++|
T Consensus 86 ~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~------------~~q~~LL~~le~--------~~v~lI 138 (447)
T 3pvs_A 86 S-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNK------------SQQDAFLPHIED--------GTITFI 138 (447)
T ss_dssp C-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------------------CCHHHHHT--------TSCEEE
T ss_pred C-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH------------HHHHHHHHHHhc--------CceEEE
Confidence 2 34556777776653 3578999999999932 233445555554 337777
Q ss_pred EEc--CCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhccc----chhhhhhHHHHHHHHccCCcHHHHHHH
Q 043051 451 GAT--NRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFR----SEEEKDVLLQEIAELTEDFTGAELQNI 524 (845)
Q Consensus 451 aaT--N~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~----~~~~~d~dl~~LA~~t~GfSgaDL~~L 524 (845)
++| |....++++|++ |+. ++.++.|+.+++.++++..+...... ....++..++.++..+.| ..+.+.++
T Consensus 139 ~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~ 214 (447)
T 3pvs_A 139 GATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNT 214 (447)
T ss_dssp EEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHH
T ss_pred ecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHH
Confidence 776 555679999999 765 78899999999999999998762110 011245678889998777 88899999
Q ss_pred HHHHHHHHHHc--CCCccCHHHHHHHHHhc
Q 043051 525 LNEAGILTARK--DLDYIGQEELLEALKRQ 552 (845)
Q Consensus 525 vneAal~A~r~--~~~~It~edl~~Al~r~ 552 (845)
+..++..+... +...||.+++.+++.+.
T Consensus 215 Le~a~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 215 LEMMADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp HHHHHHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred HHHHHHhcccccCCCCccCHHHHHHHHhhh
Confidence 99888776433 44679999999999876
No 39
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.80 E-value=2.4e-18 Score=172.75 Aligned_cols=205 Identities=20% Similarity=0.238 Sum_probs=152.9
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeEEeec
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA-----GVPFFAANG 372 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el-----g~pfi~vs~ 372 (845)
++.++.+|++++|.+..++.|.+.+.. . .+.+++|+||||||||++|+++++++ ..+++.+++
T Consensus 9 ~~~~p~~~~~~~g~~~~~~~l~~~l~~---~---------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 76 (226)
T 2chg_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVER---K---------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (226)
T ss_dssp HHTSCSSGGGCCSCHHHHHHHHHHHHT---T---------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET
T ss_pred HhcCCCCHHHHcCcHHHHHHHHHHHhC---C---------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc
Confidence 446788999999999988887776532 1 13359999999999999999999875 467888887
Q ss_pred hhHHHhhhhhhhhhHHHHHHHHH------hcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCc
Q 043051 373 TDFVEMFVGVAASRVKDLFASAR------SFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQ 446 (845)
Q Consensus 373 sdf~~~~vG~~~~~vr~lF~~A~------~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ 446 (845)
++... ...++..+.... ...+++|+|||+|.+. ......|..++.+. ..+
T Consensus 77 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~------------~~~~~~l~~~l~~~------~~~ 132 (226)
T 2chg_A 77 SDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT------------ADAQAALRRTMEMY------SKS 132 (226)
T ss_dssp TCTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSC------------HHHHHHHHHHHHHT------TTT
T ss_pred ccccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcC------------HHHHHHHHHHHHhc------CCC
Confidence 65322 112222222221 2457899999999982 34456677776652 344
Q ss_pred EEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHH
Q 043051 447 VLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILN 526 (845)
Q Consensus 447 ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~Lvn 526 (845)
+.+|++||.+..+++++.+ ||. .+.+++|+.++..+++...+...+... .+..+..++..+.| ..+.+.+++.
T Consensus 133 ~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g-~~r~l~~~l~ 205 (226)
T 2chg_A 133 CRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKI---TEDGLEALIYISGG-DFRKAINALQ 205 (226)
T ss_dssp EEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred CeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 8889999999999999998 887 899999999999999998887655443 34567788888877 6777777777
Q ss_pred HHHHHHHHcCCCccCHHHHHHHHH
Q 043051 527 EAGILTARKDLDYIGQEELLEALK 550 (845)
Q Consensus 527 eAal~A~r~~~~~It~edl~~Al~ 550 (845)
.++..+ +.|+.+++++++.
T Consensus 206 ~~~~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 206 GAAAIG-----EVVDADTIYQITA 224 (226)
T ss_dssp HHHHTC-----SCBCHHHHHHHHH
T ss_pred HHHhcC-----ceecHHHHHHHhc
Confidence 766443 6899999999886
No 40
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.80 E-value=4.8e-19 Score=192.05 Aligned_cols=211 Identities=20% Similarity=0.252 Sum_probs=148.3
Q ss_pred cccccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeec
Q 043051 293 KFISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANG 372 (845)
Q Consensus 293 ~~~~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~ 372 (845)
...+.+++++.+|++++|++++++.|.+.+. ....|..+|++||||||||++|+++|++++.+++.+++
T Consensus 13 ~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~-----------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~ 81 (324)
T 3u61_B 13 EHILEQKYRPSTIDECILPAFDKETFKSITS-----------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNG 81 (324)
T ss_dssp CSSHHHHSCCCSTTTSCCCHHHHHHHHHHHH-----------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEET
T ss_pred cchHHHhhCCCCHHHHhCcHHHHHHHHHHHH-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcc
Confidence 4566777899999999999999988887765 23456788999999999999999999999999999998
Q ss_pred hhHHHhhhhhhhhhHHHHHHHHHhc-----CCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcE
Q 043051 373 TDFVEMFVGVAASRVKDLFASARSF-----APSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQV 447 (845)
Q Consensus 373 sdf~~~~vG~~~~~vr~lF~~A~~~-----aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~V 447 (845)
++.. ...++..+...... .++||||||+|.+.. .+.+..|..++++. ..++
T Consensus 82 ~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-----------~~~~~~L~~~le~~------~~~~ 137 (324)
T 3u61_B 82 SDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-----------AESQRHLRSFMEAY------SSNC 137 (324)
T ss_dssp TTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-----------HHHHHHHHHHHHHH------GGGC
T ss_pred cccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-----------HHHHHHHHHHHHhC------CCCc
Confidence 8742 33445544443322 468999999999931 34567777777763 2347
Q ss_pred EEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhh-------hcccchhhhh-hHHHHHHHHccCCcHH
Q 043051 448 LVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARN-------KYFRSEEEKD-VLLQEIAELTEDFTGA 519 (845)
Q Consensus 448 iVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~-------~~l~~~~~~d-~dl~~LA~~t~GfSga 519 (845)
.+|++||.+..++++|.+ ||. .+.|+.|+.++|.+|++..+.. .+... ++ ..++.++..+.| ..+
T Consensus 138 ~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~---~~~~~~~~l~~~~~g-d~R 210 (324)
T 3u61_B 138 SIIITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAI---ADMKVVAALVKKNFP-DFR 210 (324)
T ss_dssp EEEEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCB---SCHHHHHHHHHHTCS-CTT
T ss_pred EEEEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCC---CcHHHHHHHHHhCCC-CHH
Confidence 889999999999999999 774 7999999999987776554432 22222 23 667888888766 344
Q ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Q 043051 520 ELQNILNEAGILTARKDLDYIGQEELLEALKR 551 (845)
Q Consensus 520 DL~~LvneAal~A~r~~~~~It~edl~~Al~r 551 (845)
++.+.+..++ ....|+.+++.+++..
T Consensus 211 ~a~~~L~~~~------~~~~i~~~~v~~~~~~ 236 (324)
T 3u61_B 211 KTIGELDSYS------SKGVLDAGILSLVTND 236 (324)
T ss_dssp HHHHHHHHHG------GGTCBCC---------
T ss_pred HHHHHHHHHh------ccCCCCHHHHHHHhCC
Confidence 4445444443 2245888888877654
No 41
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.80 E-value=2.1e-18 Score=196.35 Aligned_cols=223 Identities=17% Similarity=0.232 Sum_probs=163.7
Q ss_pred CCCCCccccc-ccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeEEeech
Q 043051 300 TTGVTFDDFA-GQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA-----GVPFFAANGT 373 (845)
Q Consensus 300 ~~~~tF~dVv-G~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el-----g~pfi~vs~s 373 (845)
.+..+|++++ |..... .+..+......+. . +.+++||||||||||+||+++++++ +.+++++++.
T Consensus 99 ~~~~tfd~fv~g~~n~~-a~~~~~~~a~~~~-------~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSF-AYHAALEVAKHPG-------R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp CTTCSGGGCCCCTTTHH-HHHHHHHHHHSTT-------S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CCCCChhhcCCCCchHH-HHHHHHHHHhCCC-------C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 4567999988 644322 2333333333321 2 5789999999999999999999988 8999999999
Q ss_pred hHHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEc
Q 043051 374 DFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGAT 453 (845)
Q Consensus 374 df~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaT 453 (845)
++...+.+.........|.......++||||||+|.+..+ ...++.+..++..+. ..+..+||++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~----------~~~q~~l~~~l~~l~----~~~~~iIitt~ 235 (440)
T 2z4s_A 170 KFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK----------TGVQTELFHTFNELH----DSGKQIVICSD 235 (440)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC----------HHHHHHHHHHHHHHH----TTTCEEEEEES
T ss_pred HHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC----------hHHHHHHHHHHHHHH----HCCCeEEEEEC
Confidence 9877665544333233344433336889999999999432 234556666666542 23446666666
Q ss_pred CCCCC---CChhhhccCccc--EEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHH
Q 043051 454 NRLDI---LDPALLRKGRFD--KIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEA 528 (845)
Q Consensus 454 N~pd~---LDpALlRpgRFd--r~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneA 528 (845)
+.+.. ++++|++ ||. ..+.+++|+.++|.+||+..+...++.. ++..+..|+..+.| +.+++.++++.+
T Consensus 236 ~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i---~~e~l~~la~~~~g-n~R~l~~~L~~~ 309 (440)
T 2z4s_A 236 REPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGEL---PEEVLNFVAENVDD-NLRRLRGAIIKL 309 (440)
T ss_dssp SCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCC---CTTHHHHHHHHCCS-CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 66665 7899999 775 7899999999999999999987665543 34558889999887 899999999999
Q ss_pred HHHHHHcCCCccCHHHHHHHHHhc
Q 043051 529 GILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 529 al~A~r~~~~~It~edl~~Al~r~ 552 (845)
...|...+ ..|+.+++.+++...
T Consensus 310 ~~~a~~~~-~~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 310 LVYKETTG-KEVDLKEAILLLKDF 332 (440)
T ss_dssp HHHHHHSS-SCCCHHHHHHHTSTT
T ss_pred HHHHHHhC-CCCCHHHHHHHHHHH
Confidence 88887665 469999999999876
No 42
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.79 E-value=1.4e-18 Score=192.01 Aligned_cols=239 Identities=26% Similarity=0.297 Sum_probs=156.3
Q ss_pred cccccHHHHHHHHHHHHHhhCcHHHh---hcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHh-hhhh
Q 043051 307 DFAGQEYIKRELQEIVRILKNDEEFQ---NKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM-FVGV 382 (845)
Q Consensus 307 dVvG~de~k~eL~eiv~~Lk~p~~~~---~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~-~vG~ 382 (845)
.|+|++.+++.+...+.......... .....++.++||+||||||||++|+++|+.++.||+.++|+++... ++|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 37999999999988774322111100 1112357899999999999999999999999999999999998754 7777
Q ss_pred h-hhhHHHHHHHH----HhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCc----------------
Q 043051 383 A-ASRVKDLFASA----RSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFK---------------- 441 (845)
Q Consensus 383 ~-~~~vr~lF~~A----~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~---------------- 441 (845)
. ...++.+|..+ ....++||||||||.+...++..+. +.+.........||..|+|..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~-~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~ 174 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSI-TRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEF 174 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC----CHHHHHHHHHHHHHHHHCC----------------C
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhccccccccc-ccccchHHHHHHHHHHhcCceeeccCccccccCCCce
Confidence 5 56677888776 3445799999999999877653221 122221223344444444321
Q ss_pred --ccCCcEEEEEEcCCC----------CC-----------------------------------CChhhhccCcccEEEE
Q 043051 442 --VSTSQVLVIGATNRL----------DI-----------------------------------LDPALLRKGRFDKIVR 474 (845)
Q Consensus 442 --~~~~~ViVIaaTN~p----------d~-----------------------------------LDpALlRpgRFdr~I~ 474 (845)
....++++|+++|.. .. ++|+|+. ||+.++.
T Consensus 175 ~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~ 252 (363)
T 3hws_A 175 LQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVAT 252 (363)
T ss_dssp CCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEE
T ss_pred EEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeee
Confidence 112235555665532 11 6788887 9999999
Q ss_pred eCCCCHhHHHHHHHH----HHhhh-------cccchhhhhhHHHHHHHH--ccCCcHHHHHHHHHHHHHHHHHcCCC---
Q 043051 475 VGLPSKDGRFAILKV----HARNK-------YFRSEEEKDVLLQEIAEL--TEDFTGAELQNILNEAGILTARKDLD--- 538 (845)
Q Consensus 475 v~~Pd~eeR~eIL~~----~l~~~-------~l~~~~~~d~dl~~LA~~--t~GfSgaDL~~LvneAal~A~r~~~~--- 538 (845)
+.+|+.+++.+|+.. .+... +... ...+..++.|+.. ...+..++|.++++.+...+..+...
T Consensus 253 ~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l-~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~~~ 331 (363)
T 3hws_A 253 LNELSEEALIQILKEPKNALTKQYQALFNLEGVDL-EFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMED 331 (363)
T ss_dssp CCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEE-EECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTCCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceE-EECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcccccC
Confidence 999999999999885 22211 1111 1234567777753 34556789999999887776654321
Q ss_pred ----ccCHHHHHHHH
Q 043051 539 ----YIGQEELLEAL 549 (845)
Q Consensus 539 ----~It~edl~~Al 549 (845)
.|+.+++++.+
T Consensus 332 ~~~~~I~~~~v~~~~ 346 (363)
T 3hws_A 332 VEKVVIDESVIDGQS 346 (363)
T ss_dssp SEEEECHHHHTTCCS
T ss_pred CceeEEcHHHHhCcC
Confidence 35555555443
No 43
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.79 E-value=6.2e-18 Score=183.61 Aligned_cols=199 Identities=18% Similarity=0.299 Sum_probs=143.8
Q ss_pred CCCCCccccc-ccH--HHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeech
Q 043051 300 TTGVTFDDFA-GQE--YIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGT 373 (845)
Q Consensus 300 ~~~~tF~dVv-G~d--e~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~s 373 (845)
.+..+|++++ |.. .+...+.. .+..+ ...+.+++|+||||||||+||+++++++ +.+++++++.
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~---~~~~~-------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKE---ALENL-------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHH---HHHTT-------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHH---HHhCc-------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 4567899998 533 33333333 33322 1246789999999999999999999998 8999999999
Q ss_pred hHHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEc
Q 043051 374 DFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGAT 453 (845)
Q Consensus 374 df~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaT 453 (845)
++...+.+.........|..... .+++|||||+|.+.. ....++.+..++..+. ..+..+|++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~----------~~~~~~~l~~~l~~~~----~~~~~iii~~~ 139 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSG----------KERTQIEFFHIFNTLY----LLEKQIILASD 139 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTT----------CHHHHHHHHHHHHHHH----HTTCEEEEEES
T ss_pred HHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccC----------ChHHHHHHHHHHHHHH----HCCCeEEEEec
Confidence 98776665443333333433333 478999999999942 2234555666665532 23446777787
Q ss_pred CCCC---CCChhhhccCccc--EEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHH
Q 043051 454 NRLD---ILDPALLRKGRFD--KIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEA 528 (845)
Q Consensus 454 N~pd---~LDpALlRpgRFd--r~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneA 528 (845)
+.+. .++++|.+ ||+ ..+.+++ +.+++.+|++.++...+... ++..++.++..+ | ..+++.++++.+
T Consensus 140 ~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l---~~~~l~~l~~~~-g-~~r~l~~~l~~~ 211 (324)
T 1l8q_A 140 RHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLEL---RKEVIDYLLENT-K-NVREIEGKIKLI 211 (324)
T ss_dssp SCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCC---CHHHHHHHHHHC-S-SHHHHHHHHHHH
T ss_pred CChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHhC-C-CHHHHHHHHHHH
Confidence 7776 58999999 775 7899999 99999999999998766544 455688999998 6 788999998887
Q ss_pred HHH
Q 043051 529 GIL 531 (845)
Q Consensus 529 al~ 531 (845)
...
T Consensus 212 ~~~ 214 (324)
T 1l8q_A 212 KLK 214 (324)
T ss_dssp HHH
T ss_pred HHc
Confidence 654
No 44
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.79 E-value=2.5e-19 Score=209.08 Aligned_cols=230 Identities=23% Similarity=0.319 Sum_probs=151.7
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH----
Q 043051 302 GVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE---- 377 (845)
Q Consensus 302 ~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~---- 377 (845)
..-.+|++|++++++.+.+.+...... ... .+..++|+||||||||+||+++|+.++.++..++++.+..
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l~~~~-----~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~ 150 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAVQKLT-----KSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEI 150 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHHHHHS-----SSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhc-----ccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhh
Confidence 344578999999999987765432111 111 4568999999999999999999999999999999876543
Q ss_pred -----hhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcc----------
Q 043051 378 -----MFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKV---------- 442 (845)
Q Consensus 378 -----~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~---------- 442 (845)
.++|.....+...|..+....| ||||||||.+...+.. ..+. .+|..++....
T Consensus 151 ~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~--------~~~~---~LL~~ld~~~~~~~~~~~~~~ 218 (543)
T 3m6a_A 151 RGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG--------DPSS---AMLEVLDPEQNSSFSDHYIEE 218 (543)
T ss_dssp -------------CHHHHHHTTCSSSE-EEEEEESSSCC--------------------CCGGGTCTTTTTBCCCSSSCC
T ss_pred hhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc--------CHHH---HHHHHHhhhhcceeecccCCe
Confidence 5677777888888988876666 9999999999654320 1223 33444432211
Q ss_pred --cCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhh-----cccch--hhhhhHHHHHHHHc
Q 043051 443 --STSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNK-----YFRSE--EEKDVLLQEIAELT 513 (845)
Q Consensus 443 --~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~-----~l~~~--~~~d~dl~~LA~~t 513 (845)
...++++|+|||+++.++++|++ ||+ .|.|+.|+.+++.+|++.++... ++... ...+..+..++...
T Consensus 219 ~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~ 295 (543)
T 3m6a_A 219 TFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYY 295 (543)
T ss_dssp CCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHH
T ss_pred eecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhC
Confidence 11458999999999999999999 995 79999999999999999887331 22110 11244566666544
Q ss_pred cC-CcHHHH----HHHHHHHHHHHHHc--CCCccCHHHHHHHHHhc
Q 043051 514 ED-FTGAEL----QNILNEAGILTARK--DLDYIGQEELLEALKRQ 552 (845)
Q Consensus 514 ~G-fSgaDL----~~LvneAal~A~r~--~~~~It~edl~~Al~r~ 552 (845)
.+ ...++| .++|+.|+..+.+. +...|+.+++.+++...
T Consensus 296 ~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 296 TREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCSC
T ss_pred ChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCCc
Confidence 33 334444 45555555554443 23469999999999876
No 45
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.79 E-value=3.1e-20 Score=210.70 Aligned_cols=170 Identities=22% Similarity=0.255 Sum_probs=81.2
Q ss_pred ccccccHHHHHHHHHHHHH-hhCcHHHhhcCC-CCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH-hhhhh
Q 043051 306 DDFAGQEYIKRELQEIVRI-LKNDEEFQNKGI-YCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE-MFVGV 382 (845)
Q Consensus 306 ~dVvG~de~k~eL~eiv~~-Lk~p~~~~~~g~-~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~-~~vG~ 382 (845)
++|+|++++|+.|...+.. ++.+..+..++. .+|+++||+||||||||++|+++|++++.+|+.++++.+.+ .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 4789999999999877744 343333333333 35789999999999999999999999999999999999988 48885
Q ss_pred -hhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEE-cCCCCCCC
Q 043051 383 -AASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGA-TNRLDILD 460 (845)
Q Consensus 383 -~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaa-TN~pd~LD 460 (845)
.+..++.+|+.|... +++||++.+.... .+......+.+||.+|||+..... + +++ ||+++.||
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~~-------~~~~e~rvl~~LL~~~dg~~~~~~-v--~a~~TN~~~~ld 160 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRARA-------EDVAEERILDALLPPAKNQWGEVE-N--HDSHSSTRQAFR 160 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhccc-------hhhHHHHHHHHHHHHhhccccccc-c--ccccccCHHHHH
Confidence 788999999999873 4589998874321 123345788899999999865433 3 555 99999999
Q ss_pred hhhhccCcccEEEEeCCCCHh-HHHHHHHH
Q 043051 461 PALLRKGRFDKIVRVGLPSKD-GRFAILKV 489 (845)
Q Consensus 461 pALlRpgRFdr~I~v~~Pd~e-eR~eIL~~ 489 (845)
++|+|+||||+.|+|++|+.. .|.+||..
T Consensus 161 ~aL~rggr~D~~i~i~lP~~~~~~~ei~~~ 190 (444)
T 1g41_A 161 KKLREGQLDDKEIEIDVSAGVSMGVEIMAP 190 (444)
T ss_dssp ------------------------------
T ss_pred HHHHcCCCcceEEEEcCCCCccchhhhhcC
Confidence 999999999999999999988 78888753
No 46
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.78 E-value=8.7e-18 Score=171.96 Aligned_cols=207 Identities=16% Similarity=0.181 Sum_probs=146.4
Q ss_pred CCCCcccccccH---HHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechh
Q 043051 301 TGVTFDDFAGQE---YIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTD 374 (845)
Q Consensus 301 ~~~tF~dVvG~d---e~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sd 374 (845)
+..+|++++|.+ .+.+.+..+ ...+ .+.+++|+||||||||++|+++++++ +.+++.+++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~---~~~~---------~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSA---ASGD---------GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHH---HHTC---------SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHH---HhCC---------CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 347999999833 333333333 2221 35789999999999999999999877 47899999988
Q ss_pred HHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcE-EEEEEc
Q 043051 375 FVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQV-LVIGAT 453 (845)
Q Consensus 375 f~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~V-iVIaaT 453 (845)
+...+.. .+.. ...+++|+|||+|.+.. .......|..++.... ..+.+ +|++++
T Consensus 91 ~~~~~~~--------~~~~--~~~~~vliiDe~~~~~~----------~~~~~~~l~~~l~~~~----~~~~~~ii~~~~ 146 (242)
T 3bos_A 91 HASISTA--------LLEG--LEQFDLICIDDVDAVAG----------HPLWEEAIFDLYNRVA----EQKRGSLIVSAS 146 (242)
T ss_dssp GGGSCGG--------GGTT--GGGSSEEEEETGGGGTT----------CHHHHHHHHHHHHHHH----HHCSCEEEEEES
T ss_pred HHHHHHH--------HHHh--ccCCCEEEEeccccccC----------CHHHHHHHHHHHHHHH----HcCCCeEEEEcC
Confidence 7654321 1111 13478999999999832 1223455666665532 12224 555555
Q ss_pred CCCC---CCChhhhccCccc--EEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHH
Q 043051 454 NRLD---ILDPALLRKGRFD--KIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEA 528 (845)
Q Consensus 454 N~pd---~LDpALlRpgRFd--r~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneA 528 (845)
+.+. .+++++.+ ||. ..+.++.|+.+++.+++..++...+... .+..++.++..+.| +.+++.++++.+
T Consensus 147 ~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g-~~r~l~~~l~~~ 220 (242)
T 3bos_A 147 ASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQL---PEDVGRFLLNRMAR-DLRTLFDVLDRL 220 (242)
T ss_dssp SCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCC---CHHHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred CCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHccC-CHHHHHHHHHHH
Confidence 4454 45689998 665 8999999999999999999987665543 45567889998877 899999999999
Q ss_pred HHHHHHcCCCccCHHHHHHHHH
Q 043051 529 GILTARKDLDYIGQEELLEALK 550 (845)
Q Consensus 529 al~A~r~~~~~It~edl~~Al~ 550 (845)
...|...+ ..||.+++++++.
T Consensus 221 ~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 221 DKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHhC-CCCcHHHHHHHhh
Confidence 88876555 5699999999874
No 47
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.78 E-value=4.1e-18 Score=186.90 Aligned_cols=228 Identities=20% Similarity=0.191 Sum_probs=163.7
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCeEEeec
Q 043051 302 GVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---------GVPFFAANG 372 (845)
Q Consensus 302 ~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---------g~pfi~vs~ 372 (845)
...+++++|.+...+.+...+.... ....+.+++|+||||||||++|+++++++ +.+++.++|
T Consensus 15 ~~~p~~~~gr~~~~~~l~~~l~~~~--------~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 15 DYVPDVLPHREAELRRLAEVLAPAL--------RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp TCCCSCCTTCHHHHHHHHHTTGGGT--------SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHH--------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 3455899999988887766553221 12346789999999999999999999988 889999998
Q ss_pred hhHHH------hhh----------hhhhhh-HHHHHHHHHhc-CCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHH
Q 043051 373 TDFVE------MFV----------GVAASR-VKDLFASARSF-APSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQIL 434 (845)
Q Consensus 373 sdf~~------~~v----------G~~~~~-vr~lF~~A~~~-aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL 434 (845)
....+ ... |.+... +..++...... .|++|||||+|.+...+ ..+..+..++
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~----------~~~~~l~~l~ 156 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP----------GGQDLLYRIT 156 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST----------THHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC----------CCChHHHhHh
Confidence 75321 110 111222 34444444332 47899999999995321 1356777777
Q ss_pred HhhcCCcccCCcEEEEEEcCCC---CCCChhhhccCcccE-EEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHH
Q 043051 435 TEMDGFKVSTSQVLVIGATNRL---DILDPALLRKGRFDK-IVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIA 510 (845)
Q Consensus 435 ~emdg~~~~~~~ViVIaaTN~p---d~LDpALlRpgRFdr-~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA 510 (845)
..++.... ..++.+|++||.+ +.+++++.+ ||.. .+.|++|+.+++.+|++.++..... .....+..++.++
T Consensus 157 ~~~~~~~~-~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~-~~~~~~~~~~~l~ 232 (387)
T 2v1u_A 157 RINQELGD-RVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFN-PGVLDPDVVPLCA 232 (387)
T ss_dssp HGGGCC------CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBC-TTTBCSSHHHHHH
T ss_pred hchhhcCC-CceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhcc-CCCCCHHHHHHHH
Confidence 77654321 3458999999988 678999998 8864 8999999999999999988864111 1111345577788
Q ss_pred HHcc---CCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 511 ELTE---DFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 511 ~~t~---GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
+.+. | ..+.+.++++.|...|...+...|+.+++..++...
T Consensus 233 ~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 233 ALAAREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp HHHHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 8776 7 678899999999988888788899999999999876
No 48
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.77 E-value=2.3e-18 Score=199.64 Aligned_cols=231 Identities=18% Similarity=0.233 Sum_probs=156.1
Q ss_pred ccccccCCCCCcccccccHHHHHHHHHHHHHhhC--cHHHhhcCC---CCCceEEEEcCCCChHHHHHHHHHHhcCCCeE
Q 043051 294 FISAEETTGVTFDDFAGQEYIKRELQEIVRILKN--DEEFQNKGI---YCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFF 368 (845)
Q Consensus 294 ~~~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~--p~~~~~~g~---~~PrgVLL~GPPGTGKT~LArALA~elg~pfi 368 (845)
..|.+++++.+|++++|++.+++.|.+.+..... +..|+..|. .+++++||+||||||||++|+++|++++.+++
T Consensus 27 ~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i 106 (516)
T 1sxj_A 27 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDIL 106 (516)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 4667789999999999999999988887754221 122333333 36789999999999999999999999999999
Q ss_pred EeechhHHHhhhhhhh-------hhHHHHHHHH-----HhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHh
Q 043051 369 AANGTDFVEMFVGVAA-------SRVKDLFASA-----RSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTE 436 (845)
Q Consensus 369 ~vs~sdf~~~~vG~~~-------~~vr~lF~~A-----~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~e 436 (845)
.++++++......... ..++.+|..+ ....++||||||+|.+.... ......|++++..
T Consensus 107 ~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~---------~~~l~~L~~~l~~ 177 (516)
T 1sxj_A 107 EQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD---------RGGVGQLAQFCRK 177 (516)
T ss_dssp EECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS---------TTHHHHHHHHHHH
T ss_pred EEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh---------HHHHHHHHHHHHh
Confidence 9999876543322111 1133444443 22467899999999995321 1223456666655
Q ss_pred hcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCC
Q 043051 437 MDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDF 516 (845)
Q Consensus 437 mdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~Gf 516 (845)
....+++|+++.....+. .+. |+...+.|+.|+.+++.++|...+...++.. .+..+..|++.+.|
T Consensus 178 ------~~~~iIli~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i---~~~~l~~la~~s~G- 243 (516)
T 1sxj_A 178 ------TSTPLILICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKL---DPNVIDRLIQTTRG- 243 (516)
T ss_dssp ------CSSCEEEEESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCC---CTTHHHHHHHHTTT-
T ss_pred ------cCCCEEEEEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCC-
Confidence 223366665554444443 344 4557899999999999999998887665543 34558889988766
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 517 TGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 517 SgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
|++.+++.....+. +...|+.+++.+++...
T Consensus 244 ---diR~~i~~L~~~~~--~~~~It~~~v~~~~~~~ 274 (516)
T 1sxj_A 244 ---DIRQVINLLSTIST--TTKTINHENINEISKAW 274 (516)
T ss_dssp ---CHHHHHHHHTHHHH--HSSCCCTTHHHHHHHHH
T ss_pred ---cHHHHHHHHHHHHh--cCCCCchHHHHHHHHhh
Confidence 44444444433333 33568999888887644
No 49
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.77 E-value=1.5e-17 Score=181.23 Aligned_cols=222 Identities=21% Similarity=0.251 Sum_probs=146.1
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-------C------
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGV-------P------ 366 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~-------p------ 366 (845)
.++.+|++++|++.+++.+.... + .+ .+.++||+||||||||++|+++++.++. +
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~--~-~~---------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTA--V-DP---------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHH--H-CG---------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCCchhccChHHHHHHHHHHh--h-CC---------CCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 56789999999998877543221 1 11 1346999999999999999999998862 3
Q ss_pred --------------------eEEeechhHHHhhhhhhhhhHHHHHHHH---------HhcCCcEEEEcccchhccCCCCC
Q 043051 367 --------------------FFAANGTDFVEMFVGVAASRVKDLFASA---------RSFAPSIIFIDEIDAIGSKRGGP 417 (845)
Q Consensus 367 --------------------fi~vs~sdf~~~~vG~~~~~vr~lF~~A---------~~~aP~ILfIDEIDaL~~~R~~~ 417 (845)
++.+..+.......|. ..+...+..+ ....++||||||||.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~--~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l------- 156 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGA--LDIERAISKGEKAFEPGLLARANRGYLYIDECNLL------- 156 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCE--ECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGS-------
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheee--chhhhhhcCCceeecCceeeecCCCEEEEeChhhC-------
Confidence 2222111101111221 0011122221 0113689999999998
Q ss_pred CCCCCchHHHHHHHHHHHhhc------CCc-ccCCcEEEEEEcCCCC-CCChhhhccCcccEEEEeCCC-CHhHHHHHHH
Q 043051 418 DIGGGGAEREQGLLQILTEMD------GFK-VSTSQVLVIGATNRLD-ILDPALLRKGRFDKIVRVGLP-SKDGRFAILK 488 (845)
Q Consensus 418 ~~~~~~~e~~~~L~qLL~emd------g~~-~~~~~ViVIaaTN~pd-~LDpALlRpgRFdr~I~v~~P-d~eeR~eIL~ 488 (845)
+...+..|++++.+-. |.. ..+.++++|++||..+ .++++|++ ||+.++.++.| +.+++.+|++
T Consensus 157 -----~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~ 229 (350)
T 1g8p_A 157 -----EDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIR 229 (350)
T ss_dssp -----CHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHH
Confidence 3455677777777511 100 0123599999999855 89999999 99988999999 6777778887
Q ss_pred HHHhhh-----------------------------cccchhhhhhHHHHHHHHccC---CcHHHHHHHHHHHHHHHHHcC
Q 043051 489 VHARNK-----------------------------YFRSEEEKDVLLQEIAELTED---FTGAELQNILNEAGILTARKD 536 (845)
Q Consensus 489 ~~l~~~-----------------------------~l~~~~~~d~dl~~LA~~t~G---fSgaDL~~LvneAal~A~r~~ 536 (845)
.++... .+. .++..++.|+....+ -+.+.+.++++.|...|..++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~ 306 (350)
T 1g8p_A 230 RRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVE---APNTALYDCAALCIALGSDGLRGELTLLRSARALAALEG 306 (350)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCB---CCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcC
Confidence 642210 111 123445555554433 267999999999999998888
Q ss_pred CCccCHHHHHHHHHhc
Q 043051 537 LDYIGQEELLEALKRQ 552 (845)
Q Consensus 537 ~~~It~edl~~Al~r~ 552 (845)
...|+.+|+.+++..+
T Consensus 307 ~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 307 ATAVGRDHLKRVATMA 322 (350)
T ss_dssp CSBCCHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHH
Confidence 8889999999999876
No 50
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.77 E-value=3.1e-17 Score=166.24 Aligned_cols=207 Identities=18% Similarity=0.181 Sum_probs=151.0
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCe---------
Q 043051 297 AEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPF--------- 367 (845)
Q Consensus 297 ~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pf--------- 367 (845)
.++..+.+|++++|.+..++.|.+.+..- +.|..++|+||||||||++|++++++++...
T Consensus 14 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~ 82 (250)
T 1njg_A 14 ARKWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 82 (250)
T ss_dssp HHHTCCCSGGGCCSCHHHHHHHHHHHHHT-----------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSC
T ss_pred hhccCCccHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 34577889999999999988887776431 2356899999999999999999999875422
Q ss_pred ---------------EEeechhHHHhhhhhhhhhHHHHHHHHH----hcCCcEEEEcccchhccCCCCCCCCCCchHHHH
Q 043051 368 ---------------FAANGTDFVEMFVGVAASRVKDLFASAR----SFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQ 428 (845)
Q Consensus 368 ---------------i~vs~sdf~~~~vG~~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~ 428 (845)
+.+++.. ......++.++..+. ...|.+|+|||+|.+ +.....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l------------~~~~~~ 144 (250)
T 1njg_A 83 CDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML------------SRHSFN 144 (250)
T ss_dssp SHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS------------CHHHHH
T ss_pred cHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccc------------cHHHHH
Confidence 2222111 112334556665543 224789999999998 233445
Q ss_pred HHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHH
Q 043051 429 GLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQE 508 (845)
Q Consensus 429 ~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~ 508 (845)
.|..++.+ ...++.+|++||.+..+++++.+ |+ ..+.+++|+.++..+++..++...+... .+..++.
T Consensus 145 ~l~~~l~~------~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~---~~~~~~~ 212 (250)
T 1njg_A 145 ALLKTLEE------PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAH---EPRALQL 212 (250)
T ss_dssp HHHHHHHS------CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCB---CHHHHHH
T ss_pred HHHHHHhc------CCCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHH
Confidence 55555543 23458899999999999999998 64 6899999999999999999887655433 3456788
Q ss_pred HHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 043051 509 IAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEAL 549 (845)
Q Consensus 509 LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al 549 (845)
+++.+.| .++.+.+++..|... +...|+.+++++++
T Consensus 213 l~~~~~G-~~~~~~~~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 213 LARAAEG-SLRDALSLTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHTT----TTSSBCHHHHHHHS
T ss_pred HHHHcCC-CHHHHHHHHHHHHhc----cCceecHHHHHHHh
Confidence 9999988 888999999887533 23479999998875
No 51
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.77 E-value=1e-17 Score=182.31 Aligned_cols=218 Identities=20% Similarity=0.229 Sum_probs=153.1
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHH--Hhh
Q 043051 302 GVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFV--EMF 379 (845)
Q Consensus 302 ~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~--~~~ 379 (845)
+..+++++|++++++.+...+.. +.++||+||||||||++|+++|+.++.+++.++++... ..+
T Consensus 23 ~~~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l 88 (331)
T 2r44_A 23 DEVGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDL 88 (331)
T ss_dssp HHHTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHH
T ss_pred HHhccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhc
Confidence 34578899999998877665432 25899999999999999999999999999999874211 112
Q ss_pred hhhhhhh-HHHHHHHHHhcC---CcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhh----cCCc-ccCCcEEEE
Q 043051 380 VGVAASR-VKDLFASARSFA---PSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEM----DGFK-VSTSQVLVI 450 (845)
Q Consensus 380 vG~~~~~-vr~lF~~A~~~a---P~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~em----dg~~-~~~~~ViVI 450 (845)
.|...-. -...|. .... .+||||||+|.+ +...+..|++.+.+- +|.. ..+.+++||
T Consensus 89 ~g~~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~------------~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~vi 154 (331)
T 2r44_A 89 IGTMIYNQHKGNFE--VKKGPVFSNFILADEVNRS------------PAKVQSALLECMQEKQVTIGDTTYPLDNPFLVL 154 (331)
T ss_dssp HEEEEEETTTTEEE--EEECTTCSSEEEEETGGGS------------CHHHHHHHHHHHHHSEEEETTEEEECCSSCEEE
T ss_pred CCceeecCCCCceE--eccCcccccEEEEEccccC------------CHHHHHHHHHHHhcCceeeCCEEEECCCCEEEE
Confidence 2211000 000000 0111 379999999998 345667777777762 1111 123358888
Q ss_pred EEcCCCC-----CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhc----------------------ccchhhhh
Q 043051 451 GATNRLD-----ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKY----------------------FRSEEEKD 503 (845)
Q Consensus 451 aaTN~pd-----~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~----------------------l~~~~~~d 503 (845)
+|+|..+ .++++|++ ||+.++.++.|+.+++.+|++.++.... ... ++
T Consensus 155 at~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~---~~ 229 (331)
T 2r44_A 155 ATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTI---SE 229 (331)
T ss_dssp EEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBC---CH
T ss_pred EecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCC---CH
Confidence 8888654 38999999 9998999999999999999998875421 111 22
Q ss_pred hHHHHHHHHc-------------------cCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 504 VLLQEIAELT-------------------EDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 504 ~dl~~LA~~t-------------------~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
..++.++... .|.|.+.+.++++.|...|...+.+.|+.+|+.+++..+
T Consensus 230 ~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 230 SLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDI 297 (331)
T ss_dssp HHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 2344443321 266899999999999999999999999999999999876
No 52
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.76 E-value=6.2e-17 Score=177.41 Aligned_cols=220 Identities=24% Similarity=0.313 Sum_probs=164.4
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhh
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMF 379 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~ 379 (845)
..+.+|++++|++.+++.+...+..-+.+ ..++..++|+||||||||+||+++|+++++++...+++.+..
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~-------~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~-- 89 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMR-------GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK-- 89 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHH-------TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS--
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC--
Confidence 45668999999999888887766543211 134578999999999999999999999999998888764421
Q ss_pred hhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc-------CCc-----ccCCcE
Q 043051 380 VGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD-------GFK-----VSTSQV 447 (845)
Q Consensus 380 vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd-------g~~-----~~~~~V 447 (845)
...+..++.. ...++|+||||+|.+.. ..++.|...+.... +.. ..-..+
T Consensus 90 ----~~~l~~~~~~--~~~~~v~~iDE~~~l~~------------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~ 151 (334)
T 1in4_A 90 ----QGDMAAILTS--LERGDVLFIDEIHRLNK------------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 151 (334)
T ss_dssp ----HHHHHHHHHH--CCTTCEEEEETGGGCCH------------HHHHHHHHHHHTSCCCC---------------CCC
T ss_pred ----HHHHHHHHHH--ccCCCEEEEcchhhcCH------------HHHHHHHHHHHhcccceeeccCcccccccccCCCe
Confidence 1223333332 12467999999999832 23445544443311 000 011236
Q ss_pred EEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHH
Q 043051 448 LVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNE 527 (845)
Q Consensus 448 iVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~Lvne 527 (845)
.++++|+++..|++.+++ ||...+.+++|+.+++.+|++..++..+... ++..+..+|+.+.| +++.+.++++.
T Consensus 152 ~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~---~~~~~~~ia~~~~G-~~R~a~~ll~~ 225 (334)
T 1in4_A 152 TLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEI---EDAAAEMIAKRSRG-TPRIAIRLTKR 225 (334)
T ss_dssp EEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCB---CHHHHHHHHHTSTT-CHHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 788899999999999999 9988899999999999999998887655443 34568899999988 78899999999
Q ss_pred HHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 528 AGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 528 Aal~A~r~~~~~It~edl~~Al~r~ 552 (845)
+...|...+...||.+++.++++..
T Consensus 226 ~~~~a~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 226 VRDMLTVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp HHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 9888887777889999999999987
No 53
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.75 E-value=1.2e-17 Score=181.80 Aligned_cols=216 Identities=18% Similarity=0.153 Sum_probs=156.5
Q ss_pred ccccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC------CCe
Q 043051 294 FISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAG------VPF 367 (845)
Q Consensus 294 ~~~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg------~pf 367 (845)
..+.+++++.+|++++|++++++.|...+ ... . +.++||+||||||||++|+++|++++ ..+
T Consensus 25 ~~~~~k~~p~~~~~i~g~~~~~~~l~~~l---~~~--------~-~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~ 92 (353)
T 1sxj_D 25 QPWVEKYRPKNLDEVTAQDHAVTVLKKTL---KSA--------N-LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRI 92 (353)
T ss_dssp -CHHHHTCCSSTTTCCSCCTTHHHHHHHT---TCT--------T-CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSE
T ss_pred ccHHHhcCCCCHHHhhCCHHHHHHHHHHH---hcC--------C-CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccce
Confidence 45566788999999999999888776654 221 1 23499999999999999999999864 468
Q ss_pred EEeechhHHHhhhhhhhhhHHHHHHHHH----------------hcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHH
Q 043051 368 FAANGTDFVEMFVGVAASRVKDLFASAR----------------SFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLL 431 (845)
Q Consensus 368 i~vs~sdf~~~~vG~~~~~vr~lF~~A~----------------~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~ 431 (845)
+.+++++... ...++..+.... ...+.||||||+|.+. ...++.|.
T Consensus 93 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~------------~~~~~~Ll 154 (353)
T 1sxj_D 93 LELNASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT------------ADAQSALR 154 (353)
T ss_dssp EEECSSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC------------HHHHHHHH
T ss_pred EEEccccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC------------HHHHHHHH
Confidence 8888776311 111222111111 1234699999999982 34566777
Q ss_pred HHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHH
Q 043051 432 QILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAE 511 (845)
Q Consensus 432 qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~ 511 (845)
.++.+. .....+|.+||.+..+++++.+ |+. .+.+++|+.++..+++...+...+... ++..++.++.
T Consensus 155 ~~le~~------~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i---~~~~l~~l~~ 222 (353)
T 1sxj_D 155 RTMETY------SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKC---DDGVLERILD 222 (353)
T ss_dssp HHHHHT------TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCC---CHHHHHHHHH
T ss_pred HHHHhc------CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHH
Confidence 777663 2346777788999999999999 775 789999999999999998887655443 4566889999
Q ss_pred HccCCcHHHHHHHHHHHHHHHHHcCCC-ccCHHHHHHHHHhc
Q 043051 512 LTEDFTGAELQNILNEAGILTARKDLD-YIGQEELLEALKRQ 552 (845)
Q Consensus 512 ~t~GfSgaDL~~LvneAal~A~r~~~~-~It~edl~~Al~r~ 552 (845)
.+.| ..+.+.+++..++..+.+.+.. .|+.+++.+++...
T Consensus 223 ~~~G-~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~~~ 263 (353)
T 1sxj_D 223 ISAG-DLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVV 263 (353)
T ss_dssp HTSS-CHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHTCC
T ss_pred HcCC-CHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhCCC
Confidence 9887 6777888888777766554433 79999999887643
No 54
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.75 E-value=4.7e-17 Score=179.22 Aligned_cols=215 Identities=23% Similarity=0.279 Sum_probs=155.2
Q ss_pred cccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----------CCCeEEeech
Q 043051 305 FDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA-----------GVPFFAANGT 373 (845)
Q Consensus 305 F~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el-----------g~pfi~vs~s 373 (845)
+++++|.++..+.|...+..... ...|++++|+||||||||++|+++++++ +.+++.++|.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 38899999999988877755322 1346799999999999999999999987 9999999987
Q ss_pred hHH-Hh------hh-----------hhh-hhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHH-HHHH
Q 043051 374 DFV-EM------FV-----------GVA-ASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQG-LLQI 433 (845)
Q Consensus 374 df~-~~------~v-----------G~~-~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~-L~qL 433 (845)
+.. .. .. |.. ...+..++..+... ++||||||+|.+...+. ... +..+
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~~-----------~~~~l~~l 158 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRRG-----------GDIVLYQL 158 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHSTT-----------SHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCCC-----------CceeHHHH
Confidence 643 11 01 111 12234444444443 34999999999954321 123 4444
Q ss_pred HHhhcCCcccCCcEEEEEEcCCC---CCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHH
Q 043051 434 LTEMDGFKVSTSQVLVIGATNRL---DILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIA 510 (845)
Q Consensus 434 L~emdg~~~~~~~ViVIaaTN~p---d~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA 510 (845)
+... .++.+|++||.+ +.+++++.+ ||+..+.|++|+.++..++++.++... +......+..++.++
T Consensus 159 ~~~~-------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~-~~~~~~~~~~~~~i~ 228 (384)
T 2qby_B 159 LRSD-------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYG-LIKGTYDDEILSYIA 228 (384)
T ss_dssp HTSS-------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHT-SCTTSCCSHHHHHHH
T ss_pred hcCC-------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhh-cccCCcCHHHHHHHH
Confidence 4332 458999999987 678999998 887799999999999999999988631 111111345577788
Q ss_pred HHcc---CCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 511 ELTE---DFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 511 ~~t~---GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
+.+. | ..+.+.++++.|...|. +...|+.+++.+++.+.
T Consensus 229 ~~~~~~~G-~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 229 AISAKEHG-DARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp HHHHTTCC-CHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHH
T ss_pred HHHHhccC-CHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHH
Confidence 8776 5 56778888988887765 55789999999999877
No 55
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.73 E-value=5.3e-17 Score=174.12 Aligned_cols=211 Identities=22% Similarity=0.248 Sum_probs=145.3
Q ss_pred ccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHH-----
Q 043051 306 DDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVE----- 377 (845)
Q Consensus 306 ~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~----- 377 (845)
++++|++.+++.+...+......- ....++..++||+||||||||++|+++|+.+ +.+++.++|+.+..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~---~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGL---KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTC---SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCC---CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 368899999999888776542100 0012233579999999999999999999987 67899999987643
Q ss_pred hhhhhh-----hhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc-----CCcccCCcE
Q 043051 378 MFVGVA-----ASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD-----GFKVSTSQV 447 (845)
Q Consensus 378 ~~vG~~-----~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd-----g~~~~~~~V 447 (845)
.+.|.. ......+........++||||||+|.+ +...+..|++++.+-. +......++
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l------------~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 161 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA------------HPDVFNILLQMLDDGRLTDSHGRTVDFRNT 161 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS------------CHHHHHHHHHHHHHSEEECTTSCEEECTTE
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhc------------CHHHHHHHHHHHhcCEEEcCCCCEEECCCc
Confidence 222211 010112223333334589999999998 3466778888887632 111122358
Q ss_pred EEEEEcCC--------------------------CCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccc---
Q 043051 448 LVIGATNR--------------------------LDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRS--- 498 (845)
Q Consensus 448 iVIaaTN~--------------------------pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~--- 498 (845)
++|+|||. ...++++|++ ||+..+.+.+|+.+++.+|++.++.......
T Consensus 162 iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~ 239 (311)
T 4fcw_A 162 VIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEK 239 (311)
T ss_dssp EEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTT
T ss_pred EEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 89999998 4568899998 9999999999999999999998776532110
Q ss_pred ---hhhhhhHHHHHHHHcc--CCcHHHHHHHHHHHHHHHH
Q 043051 499 ---EEEKDVLLQEIAELTE--DFTGAELQNILNEAGILTA 533 (845)
Q Consensus 499 ---~~~~d~dl~~LA~~t~--GfSgaDL~~LvneAal~A~ 533 (845)
....+..++.++.... ..+.++|.++++.+...+.
T Consensus 240 ~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~ 279 (311)
T 4fcw_A 240 RISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPL 279 (311)
T ss_dssp TCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHH
T ss_pred CcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHH
Confidence 1124566778887665 5578899999998866543
No 56
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.73 E-value=9.4e-18 Score=164.53 Aligned_cols=161 Identities=25% Similarity=0.354 Sum_probs=119.3
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeEE
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA----------GVPFFA 369 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el----------g~pfi~ 369 (845)
..+.+|++++|.++..+.+.+.+ .. ..+.+++|+||||||||++|+++++++ +.+++.
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l---~~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
T 1jbk_A 16 AEQGKLDPVIGRDEEIRRTIQVL---QR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 83 (195)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHH---TS---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred HhhccccccccchHHHHHHHHHH---hc---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEE
Confidence 45678999999998766665543 22 236789999999999999999999986 789999
Q ss_pred eechhHH--HhhhhhhhhhHHHHHHHHHh-cCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCc
Q 043051 370 ANGTDFV--EMFVGVAASRVKDLFASARS-FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQ 446 (845)
Q Consensus 370 vs~sdf~--~~~vG~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ 446 (845)
++++++. ..+.|.....++.++..+.. ..++||||||+|.+...+.. .........+..++.. ++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~----~~~~~~~~~l~~~~~~--------~~ 151 (195)
T 1jbk_A 84 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA----DGAMDAGNMLKPALAR--------GE 151 (195)
T ss_dssp ECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT----------CCCCHHHHHHHHHT--------TS
T ss_pred eeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcc----cchHHHHHHHHHhhcc--------CC
Confidence 9998876 34556667778888886643 45789999999999654321 1112234445454432 34
Q ss_pred EEEEEEcCCCC-----CCChhhhccCcccEEEEeCCCCHhHHHHHH
Q 043051 447 VLVIGATNRLD-----ILDPALLRKGRFDKIVRVGLPSKDGRFAIL 487 (845)
Q Consensus 447 ViVIaaTN~pd-----~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL 487 (845)
+.+|++||.++ .+++++.+ ||+ .+.++.|+.+++.+||
T Consensus 152 ~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 152 LHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred eEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 78888888876 68999999 998 6999999999998876
No 57
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.72 E-value=2.1e-16 Score=172.98 Aligned_cols=227 Identities=20% Similarity=0.247 Sum_probs=159.0
Q ss_pred CCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc------CCCeEEeechh
Q 043051 301 TGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA------GVPFFAANGTD 374 (845)
Q Consensus 301 ~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el------g~pfi~vs~sd 374 (845)
+...+++++|.++..+.|.+.+.... ....+..++|+||||||||+|++++++++ +.+++.++|..
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~--------~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLY--------REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGG--------GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHH--------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 34556899999988877766543211 12346789999999999999999999988 89999999875
Q ss_pred HHH------hh----------hhhhhhh-HHHHHHHHHhcC-CcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHh
Q 043051 375 FVE------MF----------VGVAASR-VKDLFASARSFA-PSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTE 436 (845)
Q Consensus 375 f~~------~~----------vG~~~~~-vr~lF~~A~~~a-P~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~e 436 (845)
... .. .|..... ...++....... |+||+|||+|.+....+ ...+..++..
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~-----------~~~l~~l~~~ 155 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN-----------DDILYKLSRI 155 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC-----------STHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc-----------CHHHHHHhhc
Confidence 321 10 0111222 334444444333 89999999999964321 1234455544
Q ss_pred hcCCcccCCcEEEEEEcCCC---CCCChhhhccCccc-EEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHH
Q 043051 437 MDGFKVSTSQVLVIGATNRL---DILDPALLRKGRFD-KIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAEL 512 (845)
Q Consensus 437 mdg~~~~~~~ViVIaaTN~p---d~LDpALlRpgRFd-r~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~ 512 (845)
++.. ...++.+|++||.+ ..+++.+.+ ||. +.+.+++++.++..+++..++...... ....+..+..++..
T Consensus 156 ~~~~--~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~-~~~~~~~~~~l~~~ 230 (386)
T 2qby_A 156 NSEV--NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKP-GVLPDNVIKLCAAL 230 (386)
T ss_dssp HHSC--CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCS-SCSCHHHHHHHHHH
T ss_pred hhhc--CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccC-CCCCHHHHHHHHHH
Confidence 4433 23458899999877 467888988 664 589999999999999999887642211 11134556777777
Q ss_pred cc---CCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 513 TE---DFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 513 t~---GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
+. | ..+.+.++++.|+..|...+...|+.+++..++...
T Consensus 231 ~~~~~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 231 AAREHG-DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp HHHTTC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred HHHhcC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 76 6 677888899999988888788899999999999877
No 58
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.72 E-value=2.8e-17 Score=175.91 Aligned_cols=210 Identities=21% Similarity=0.246 Sum_probs=148.9
Q ss_pred cccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeEE
Q 043051 295 ISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA-----GVPFFA 369 (845)
Q Consensus 295 ~~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el-----g~pfi~ 369 (845)
.+.+++++.+|++++|++.+++.|...+. . ...| ++||+||||||||++|+++++.+ +.+++.
T Consensus 6 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~---~--------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 73 (319)
T 2chq_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVE---R--------KNIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFIE 73 (319)
T ss_dssp CTTTTTSCSSGGGSCSCHHHHHHHHTTTT---T--------TCCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEE
T ss_pred cHHHhcCCCCHHHHhCCHHHHHHHHHHHh---C--------CCCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEE
Confidence 44566889999999999998887766542 1 1223 49999999999999999999986 456888
Q ss_pred eechhHHHhhhhhhhhhHHHHHHHHH------hcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCccc
Q 043051 370 ANGTDFVEMFVGVAASRVKDLFASAR------SFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVS 443 (845)
Q Consensus 370 vs~sdf~~~~vG~~~~~vr~lF~~A~------~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~ 443 (845)
+++++... ...++..+.... ...++||+|||+|.+. ....+.|..+ ++. .
T Consensus 74 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~------------~~~~~~L~~~---le~---~ 129 (319)
T 2chq_A 74 MNASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT------------ADAQAALRRT---MEM---Y 129 (319)
T ss_dssp EETTSTTC------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC------------HHHHHTTGGG---TSS---S
T ss_pred EeCccccC------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC------------HHHHHHHHHH---HHh---c
Confidence 88876421 222333333322 1347899999999982 2233333333 332 3
Q ss_pred CCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHH
Q 043051 444 TSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQN 523 (845)
Q Consensus 444 ~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~ 523 (845)
+.++++|++||.+..+++++.+ |+. .+.+++|+.+++.+++...+...+... ++..++.++..+.| +.+.+.+
T Consensus 130 ~~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i---~~~~l~~l~~~~~G-~~r~~~~ 202 (319)
T 2chq_A 130 SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKI---TEDGLEALIYISGG-DFRKAIN 202 (319)
T ss_dssp SSSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCB---CHHHHHHHHHTTTT-CHHHHHH
T ss_pred CCCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCC-CHHHHHH
Confidence 3558899999999999999999 664 899999999999999999988766543 34567888887766 5556666
Q ss_pred HHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 524 ILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 524 LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
++..++.. ...|+.+++.+.+...
T Consensus 203 ~l~~~~~~-----~~~i~~~~v~~~~~~~ 226 (319)
T 2chq_A 203 ALQGAAAI-----GEVVDADTIYQITATA 226 (319)
T ss_dssp HHHHHHHS-----SSCBCHHHHHHHTTCC
T ss_pred HHHHHHHc-----CCCCCHHHHHHHHCCC
Confidence 66554421 3469999988776543
No 59
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.72 E-value=1.7e-16 Score=170.13 Aligned_cols=210 Identities=18% Similarity=0.174 Sum_probs=154.2
Q ss_pred cccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeEE
Q 043051 295 ISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA-----GVPFFA 369 (845)
Q Consensus 295 ~~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el-----g~pfi~ 369 (845)
.+.++.++.+|++++|++.+++.|...+. . .+.|. +||+||||||||++|+++++.+ +.+++.
T Consensus 10 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~---~--------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 77 (323)
T 1sxj_B 10 PWVEKYRPQVLSDIVGNKETIDRLQQIAK---D--------GNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLE 77 (323)
T ss_dssp CHHHHTCCSSGGGCCSCTHHHHHHHHHHH---S--------CCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEE
T ss_pred cHHHhcCCCCHHHHHCCHHHHHHHHHHHH---c--------CCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEE
Confidence 34455788999999999999888877653 1 12344 9999999999999999999986 456788
Q ss_pred eechhHHHhhhhhhhhhHHHHHHHHH-------hcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcc
Q 043051 370 ANGTDFVEMFVGVAASRVKDLFASAR-------SFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKV 442 (845)
Q Consensus 370 vs~sdf~~~~vG~~~~~vr~lF~~A~-------~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~ 442 (845)
+++++.. +...+++++.... ...++||+|||+|.+. ....+.|..++.+.
T Consensus 78 ~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~------------~~~~~~L~~~le~~----- 134 (323)
T 1sxj_B 78 LNASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT------------AGAQQALRRTMELY----- 134 (323)
T ss_dssp ECTTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC------------HHHHHTTHHHHHHT-----
T ss_pred ecCcccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCC------------HHHHHHHHHHHhcc-----
Confidence 8876531 2334555555443 2237899999999982 33456677777662
Q ss_pred cCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHH
Q 043051 443 STSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQ 522 (845)
Q Consensus 443 ~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~ 522 (845)
..++++|++||.+..+++++.+ |+. .+.+++|+.++..+++...+...+... ++..+..++..+.| +.+.+.
T Consensus 135 -~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G-~~r~a~ 206 (323)
T 1sxj_B 135 -SNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKY---TNDGLEAIIFTAEG-DMRQAI 206 (323)
T ss_dssp -TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHHTT-CHHHHH
T ss_pred -CCCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCC-CHHHHH
Confidence 3447888889999999999999 554 899999999999999999887655543 34567888888877 566666
Q ss_pred HHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 523 NILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 523 ~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
+++..++.. ...|+.+++.+++...
T Consensus 207 ~~l~~~~~~-----~~~i~~~~v~~~~~~~ 231 (323)
T 1sxj_B 207 NNLQSTVAG-----HGLVNADNVFKIVDSP 231 (323)
T ss_dssp HHHHHHHHH-----HSSBCHHHHHHHHTSC
T ss_pred HHHHHHHhc-----CCCcCHHHHHHHHCCC
Confidence 666655422 1469999998887654
No 60
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.72 E-value=8.4e-17 Score=178.55 Aligned_cols=242 Identities=23% Similarity=0.256 Sum_probs=148.2
Q ss_pred cccccHHHHHHHHHHHHH-hhCcHHH-----------------hhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeE
Q 043051 307 DFAGQEYIKRELQEIVRI-LKNDEEF-----------------QNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFF 368 (845)
Q Consensus 307 dVvG~de~k~eL~eiv~~-Lk~p~~~-----------------~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi 368 (845)
+|+|++++|+.|...+.. ++..... .......+.++||+||||||||++|+++|+.++.||+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 589999999999887631 1111100 0112345678999999999999999999999999999
Q ss_pred EeechhHH-Hhhhhhh-hhhHHHHHHHHH----hcCCcEEEEcccchhccCCCCCCC--CCCchHHHHHHHHHHHhhc-C
Q 043051 369 AANGTDFV-EMFVGVA-ASRVKDLFASAR----SFAPSIIFIDEIDAIGSKRGGPDI--GGGGAEREQGLLQILTEMD-G 439 (845)
Q Consensus 369 ~vs~sdf~-~~~vG~~-~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~R~~~~~--~~~~~e~~~~L~qLL~emd-g 439 (845)
.++++.+. ..+.|.. ...+..++..+. ...++||||||+|.+...++.... .......++.|+++++... .
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998875 3455543 334555555432 235789999999999776432111 1112235666666665310 0
Q ss_pred C--------------cccCCcEEEEEEcCCC-----------------------------------------CCCChhhh
Q 043051 440 F--------------KVSTSQVLVIGATNRL-----------------------------------------DILDPALL 464 (845)
Q Consensus 440 ~--------------~~~~~~ViVIaaTN~p-----------------------------------------d~LDpALl 464 (845)
+ .....++++|++||.. ..+.|+|+
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 0 0112446788887721 12567777
Q ss_pred ccCcccEEEEeCCCCHhHHHHHHHH----HHhh-------hcccchhhhhhHHHHHHHHcc--CCcHHHHHHHHHHHHHH
Q 043051 465 RKGRFDKIVRVGLPSKDGRFAILKV----HARN-------KYFRSEEEKDVLLQEIAELTE--DFTGAELQNILNEAGIL 531 (845)
Q Consensus 465 RpgRFdr~I~v~~Pd~eeR~eIL~~----~l~~-------~~l~~~~~~d~dl~~LA~~t~--GfSgaDL~~LvneAal~ 531 (845)
+ ||+.++.|++++.++..+|+.. .+.. .+... ..++..+..|+.... ....+.|.++++.+...
T Consensus 262 ~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~ 338 (376)
T 1um8_A 262 G--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDL-IFEEEAIKEIAQLALERKTGARGLRAIIEDFCLD 338 (376)
T ss_dssp T--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEE-EECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHH
T ss_pred c--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceE-EECHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 7 8989999999999999999862 2111 11111 124556777777643 24788999999988776
Q ss_pred HHHcCC------CccCHHHHHHHHHh
Q 043051 532 TARKDL------DYIGQEELLEALKR 551 (845)
Q Consensus 532 A~r~~~------~~It~edl~~Al~r 551 (845)
+..+.. -.|+.+++.++...
T Consensus 339 ~~~~~~~~~~~~~~i~~~~v~~~~~~ 364 (376)
T 1um8_A 339 IMFDLPKLKGSEVRITKDCVLKQAEP 364 (376)
T ss_dssp HHHTGGGGTTSEEEECHHHHTTSSCC
T ss_pred HHhhccCCCCCEEEEeHHHhcCCCCc
Confidence 554322 15888888765443
No 61
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.72 E-value=4.4e-17 Score=196.82 Aligned_cols=224 Identities=21% Similarity=0.292 Sum_probs=162.8
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeEE
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA----------GVPFFA 369 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el----------g~pfi~ 369 (845)
..+.+|++++|.++..+.+.+++ .. ..+.++||+||||||||++|+++|+.+ +.+++.
T Consensus 180 ~~~~~~d~~iGr~~~i~~l~~~l---~~---------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~ 247 (758)
T 1r6b_X 180 ARVGGIDPLIGREKELERAIQVL---CR---------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS 247 (758)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHH---TS---------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred HhcCCCCCccCCHHHHHHHHHHH---hc---------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE
Confidence 45678999999998777655543 22 235789999999999999999999987 567888
Q ss_pred eechhHH--HhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcE
Q 043051 370 ANGTDFV--EMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQV 447 (845)
Q Consensus 370 vs~sdf~--~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~V 447 (845)
++++.+. ..+.|....+++.+|..+....++||||||+|.+.+.++. ..+..+. ..+|..+ ...+.+
T Consensus 248 ~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~---~~~~~~~----~~~L~~~----l~~~~~ 316 (758)
T 1r6b_X 248 LDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA---SGGQVDA----ANLIKPL----LSSGKI 316 (758)
T ss_dssp CCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCS---SSCHHHH----HHHHSSC----SSSCCC
T ss_pred EcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCC---CcchHHH----HHHHHHH----HhCCCe
Confidence 8877766 3567778889999999998878899999999999765431 1112222 2333222 123458
Q ss_pred EEEEEcCCCC-----CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhh----cccchhhhhhHHHHHHHHccC---
Q 043051 448 LVIGATNRLD-----ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNK----YFRSEEEKDVLLQEIAELTED--- 515 (845)
Q Consensus 448 iVIaaTN~pd-----~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~----~l~~~~~~d~dl~~LA~~t~G--- 515 (845)
.+|++||.++ .+|++|.| ||+ .+.|+.|+.+++.+||+.++... .... .+..+..++..+.+
T Consensus 317 ~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~---~~~al~~~~~~s~~~i~ 390 (758)
T 1r6b_X 317 RVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRY---TAKAVRAAVELAVKYIN 390 (758)
T ss_dssp EEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCC---CHHHHHHHHHHHHHHCT
T ss_pred EEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHhhhhcc
Confidence 8999998754 47899999 998 69999999999999999877542 2222 23445666665443
Q ss_pred --CcHHHHHHHHHHHHHHHHH----cCCCccCHHHHHHHHHhc
Q 043051 516 --FTGAELQNILNEAGILTAR----KDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 516 --fSgaDL~~LvneAal~A~r----~~~~~It~edl~~Al~r~ 552 (845)
+.+..+..++++|+..+.. .....|+.+++.+++.+.
T Consensus 391 ~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~ 433 (758)
T 1r6b_X 391 DRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARI 433 (758)
T ss_dssp TSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHH
T ss_pred cccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHh
Confidence 5667888999998766554 234679999999999886
No 62
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.72 E-value=2.6e-17 Score=188.69 Aligned_cols=209 Identities=22% Similarity=0.299 Sum_probs=144.3
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeE
Q 043051 299 ETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA----------GVPFF 368 (845)
Q Consensus 299 ~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el----------g~pfi 368 (845)
...+.+|++|+|++..++.+.+++. . ..+.++||+||||||||++|+++|+.+ +.+|+
T Consensus 173 ~~r~~~ld~iiGr~~~i~~l~~~l~---r---------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (468)
T 3pxg_A 173 IAKEDSLDPVIGRSKEIQRVIEVLS---R---------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (468)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHH---C---------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HHhcCCCCCccCcHHHHHHHHHHHh---c---------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 4567789999999988887666543 2 124689999999999999999999996 78899
Q ss_pred EeechhHHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEE
Q 043051 369 AANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVL 448 (845)
Q Consensus 369 ~vs~sdf~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~Vi 448 (845)
.++++ ..+.|....+++.+|..+....|+||||| + .....+.|... + ..+.+.
T Consensus 241 ~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~-----------~~~a~~~L~~~---L-----~~g~v~ 293 (468)
T 3pxg_A 241 TLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----A-----------AIDASNILKPS---L-----ARGELQ 293 (468)
T ss_dssp CC-------------CTTHHHHHHHHHTCCCCEEEEC-----C-------------------CCC---T-----TSSSCE
T ss_pred EeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----C-----------chhHHHHHHHh---h-----cCCCEE
Confidence 99987 66778888899999999998889999999 1 01122222222 2 134699
Q ss_pred EEEEcCCCC-----CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhh----hcccchhhhhhHHHHHHHHccCC---
Q 043051 449 VIGATNRLD-----ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARN----KYFRSEEEKDVLLQEIAELTEDF--- 516 (845)
Q Consensus 449 VIaaTN~pd-----~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~----~~l~~~~~~d~dl~~LA~~t~Gf--- 516 (845)
+|++||.++ .+|++|.| ||. .|.|+.|+.+++.+||+.++.. .+... .+..+..++..+.++
T Consensus 294 vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i---~~~al~~l~~~s~~~~~~ 367 (468)
T 3pxg_A 294 CIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSI---TDDAIEAAVKLSDRYISD 367 (468)
T ss_dssp EEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSC---CHHHHHHHHHHHHHSSCC
T ss_pred EEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHHHhcc
Confidence 999999987 58999999 997 5999999999999999987755 22222 345566666655443
Q ss_pred --cHHHHHHHHHHHHHHHHHcCC-CccCHHHHHHHHHhc
Q 043051 517 --TGAELQNILNEAGILTARKDL-DYIGQEELLEALKRQ 552 (845)
Q Consensus 517 --SgaDL~~LvneAal~A~r~~~-~~It~edl~~Al~r~ 552 (845)
.+....+++.+|+..+..... ..-...+++..+.+.
T Consensus 368 ~~lp~~ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l 406 (468)
T 3pxg_A 368 RFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEV 406 (468)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHTTSCCSSTHHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 455788888888766554433 234455565555554
No 63
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.71 E-value=4.3e-16 Score=167.35 Aligned_cols=210 Identities=26% Similarity=0.254 Sum_probs=152.2
Q ss_pred cccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC-----CCeEE
Q 043051 295 ISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAG-----VPFFA 369 (845)
Q Consensus 295 ~~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg-----~pfi~ 369 (845)
.+.+++++.+|++++|++++++.|...+..- + +.++||+||||||||++|+++++.+. .+++.
T Consensus 14 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~-~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~ 81 (327)
T 1iqp_A 14 PWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG-----------S-MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLE 81 (327)
T ss_dssp CHHHHTCCCSTTTCCSCHHHHHHHHHHHHHT-----------C-CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEE
T ss_pred chhhccCCCCHHHhhCCHHHHHHHHHHHHcC-----------C-CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEE
Confidence 4556688999999999999999888766421 1 23599999999999999999999863 35788
Q ss_pred eechhHHHhhhhhhhhhHHHHHHHHHh------cCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCccc
Q 043051 370 ANGTDFVEMFVGVAASRVKDLFASARS------FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVS 443 (845)
Q Consensus 370 vs~sdf~~~~vG~~~~~vr~lF~~A~~------~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~ 443 (845)
+++++... ...++..+..... ..+++|+|||+|.+ +....+.|..++.+.
T Consensus 82 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l------------~~~~~~~L~~~le~~------ 137 (327)
T 1iqp_A 82 LNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEADAL------------TQDAQQALRRTMEMF------ 137 (327)
T ss_dssp EETTCHHH------HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGS------------CHHHHHHHHHHHHHT------
T ss_pred eeccccCc------hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcC------------CHHHHHHHHHHHHhc------
Confidence 88776422 1223332222211 34789999999998 234566677776652
Q ss_pred CCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHH
Q 043051 444 TSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQN 523 (845)
Q Consensus 444 ~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~ 523 (845)
...+.+|++||.+..+++++.+ |+. .+.+++|+.++..+++...+...+... ++..++.++..+.| +.+.+.+
T Consensus 138 ~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g-~~r~~~~ 210 (327)
T 1iqp_A 138 SSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLEL---TEEGLQAILYIAEG-DMRRAIN 210 (327)
T ss_dssp TTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEE---CHHHHHHHHHHHTT-CHHHHHH
T ss_pred CCCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHCCC-CHHHHHH
Confidence 3447888899999999999999 765 789999999999999998887665543 34567888888877 6666777
Q ss_pred HHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 524 ILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 524 LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
++..++. ....|+.+++...+...
T Consensus 211 ~l~~~~~-----~~~~i~~~~v~~~~~~~ 234 (327)
T 1iqp_A 211 ILQAAAA-----LDKKITDENVFMVASRA 234 (327)
T ss_dssp HHHHHHT-----TCSEECHHHHHHHTTCC
T ss_pred HHHHHHh-----cCCCCCHHHHHHHHCCC
Confidence 7665542 22468888887766543
No 64
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.71 E-value=5.7e-16 Score=169.91 Aligned_cols=209 Identities=18% Similarity=0.172 Sum_probs=154.8
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------
Q 043051 298 EETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVP----------- 366 (845)
Q Consensus 298 ~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~p----------- 366 (845)
+++++.+|++++|++++++.|...+.. .+.|..+||+||||||||++|+++|+.++..
T Consensus 8 ~k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 76 (373)
T 1jr3_A 8 RKWRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 76 (373)
T ss_dssp HHTCCCSTTTSCSCHHHHHHHHHHHHH-----------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSS
T ss_pred HhhCCCchhhccCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 457788999999999999988877642 1245689999999999999999999988642
Q ss_pred -------------eEEeechhHHHhhhhhhhhhHHHHHHHHHh----cCCcEEEEcccchhccCCCCCCCCCCchHHHHH
Q 043051 367 -------------FFAANGTDFVEMFVGVAASRVKDLFASARS----FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQG 429 (845)
Q Consensus 367 -------------fi~vs~sdf~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~ 429 (845)
++.++++. ..+...++.+++.+.. ..+.||+|||+|.+ +....+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l------------~~~~~~~ 138 (373)
T 1jr3_A 77 DNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML------------SRHSFNA 138 (373)
T ss_dssp HHHHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGS------------CHHHHHH
T ss_pred HHHHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchh------------cHHHHHH
Confidence 12222111 0123457777777653 23679999999998 2344555
Q ss_pred HHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHH
Q 043051 430 LLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEI 509 (845)
Q Consensus 430 L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~L 509 (845)
|..++.+ .+.++++|++||.+..+++++.+ |+ ..+.+++|+.++..++++..+...+... .+..+..+
T Consensus 139 Ll~~le~------~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~---~~~a~~~l 206 (373)
T 1jr3_A 139 LLKTLEE------PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAH---EPRALQLL 206 (373)
T ss_dssp HHHHHHS------CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHH
T ss_pred HHHHHhc------CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHH
Confidence 6666554 23458888999999999999998 55 6899999999999999999887765543 34557889
Q ss_pred HHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 510 AELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 510 A~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
+..+.| +.+++.++++.+...+ ...|+.+++.+++...
T Consensus 207 ~~~~~G-~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~~~~ 244 (373)
T 1jr3_A 207 ARAAEG-SLRDALSLTDQAIASG----DGQVSTQAVSAMLGTL 244 (373)
T ss_dssp HHHSSS-CHHHHHHHHHHHHHHT----TTCBCHHHHHHHTTCC
T ss_pred HHHCCC-CHHHHHHHHHHHHHhc----CCcccHHHHHHHhCCC
Confidence 999887 7888888888775432 3569999998876543
No 65
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.68 E-value=3e-16 Score=165.40 Aligned_cols=212 Identities=21% Similarity=0.200 Sum_probs=130.4
Q ss_pred CCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC---CCeEEeechhHHHh-
Q 043051 303 VTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAG---VPFFAANGTDFVEM- 378 (845)
Q Consensus 303 ~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg---~pfi~vs~sdf~~~- 378 (845)
.+|++++|.+...+.+.+.+..... .+.++||+||||||||++|++++..+. .||+.++|+.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 5799999999998888777665432 246899999999999999999999874 79999999876432
Q ss_pred ----hhhhhh-------hhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc-----CCcc
Q 043051 379 ----FVGVAA-------SRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD-----GFKV 442 (845)
Q Consensus 379 ----~vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd-----g~~~ 442 (845)
..|... ......|..+ .+++|||||||.+ +...+..|++++++-. +...
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l------------~~~~q~~Ll~~l~~~~~~~~g~~~~ 137 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATA------------PMMVQEKLLRVIEYGELERVGGSQP 137 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGS------------CHHHHHHHHHHHHHCEECCCCC--C
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhc------------CHHHHHHHHHHHHhCCeecCCCccc
Confidence 112100 0012234333 3589999999998 3456777888877521 1111
Q ss_pred cCCcEEEEEEcCCC-------CCCChhhhccCcccEEEEeCCCCHhHHHH----HHHHHHhh----hcccc-hhhhhhHH
Q 043051 443 STSQVLVIGATNRL-------DILDPALLRKGRFDKIVRVGLPSKDGRFA----ILKVHARN----KYFRS-EEEKDVLL 506 (845)
Q Consensus 443 ~~~~ViVIaaTN~p-------d~LDpALlRpgRFdr~I~v~~Pd~eeR~e----IL~~~l~~----~~l~~-~~~~d~dl 506 (845)
...++.+|++||.+ ..++++|.+ ||+. +.+..|+..+|.+ +++.++.. .+... ....+..+
T Consensus 138 ~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~ 214 (265)
T 2bjv_A 138 LQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERAR 214 (265)
T ss_dssp EECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHH
T ss_pred ccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHH
Confidence 12347899999984 246788988 8863 5667777766644 33333322 22211 01234556
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 043051 507 QEIAELTEDFTGAELQNILNEAGILTARKDLDYIGQEEL 545 (845)
Q Consensus 507 ~~LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl 545 (845)
+.+....-..+.++|.++++.+...+ ....|+.+|+
T Consensus 215 ~~L~~~~~~gn~reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 215 ETLLNYRWPGNIRELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp HHHHHSCCTTHHHHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHhC---CCCcCcHHHc
Confidence 66665542236679999999887655 2345666665
No 66
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.68 E-value=3.6e-16 Score=189.11 Aligned_cols=204 Identities=20% Similarity=0.231 Sum_probs=144.1
Q ss_pred ccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCc-eEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHhhhh
Q 043051 306 DDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPK-GVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEMFVG 381 (845)
Q Consensus 306 ~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~Pr-gVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~~vG 381 (845)
++|+|++.+++.+.+.+...+.... . ...|. ++||+||||||||++|+++|..+ +.||+.++|+++.+.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~---~-~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~ 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLK---D-PKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHST 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCS---C-TTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccC---C-CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccc
Confidence 5799999999999888876432110 0 11233 69999999999999999999987 789999999998876544
Q ss_pred hhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc-----CCcccCCcEEEEEEcCCC
Q 043051 382 VAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD-----GFKVSTSQVLVIGATNRL 456 (845)
Q Consensus 382 ~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd-----g~~~~~~~ViVIaaTN~p 456 (845)
. ...++...+...++||||||||.+ +...++.|+++|++-. |-.....++++|+|||.+
T Consensus 567 ~----~~~l~~~~~~~~~~vl~lDEi~~~------------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~ 630 (758)
T 3pxi_A 567 S----GGQLTEKVRRKPYSVVLLDAIEKA------------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVG 630 (758)
T ss_dssp C-------CHHHHHHCSSSEEEEECGGGS------------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSS
T ss_pred c----cchhhHHHHhCCCeEEEEeCcccc------------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCC
Confidence 3 122333344456689999999988 4567888888888721 111233468999999975
Q ss_pred CC------------CChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccc------hhhhhhHHHHHHHH--ccCC
Q 043051 457 DI------------LDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRS------EEEKDVLLQEIAEL--TEDF 516 (845)
Q Consensus 457 d~------------LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~------~~~~d~dl~~LA~~--t~Gf 516 (845)
.. ++|+|++ |||.+|.|++|+.+++.+|++.++....... -..++..++.|+.. ...+
T Consensus 631 ~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 708 (758)
T 3pxi_A 631 ASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEY 708 (758)
T ss_dssp TTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTT
T ss_pred hhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCC
Confidence 54 7899988 9999999999999999999998776531110 01245567778764 3345
Q ss_pred cHHHHHHHHHHHHHH
Q 043051 517 TGAELQNILNEAGIL 531 (845)
Q Consensus 517 SgaDL~~LvneAal~ 531 (845)
..++|.++++.+...
T Consensus 709 ~~R~L~~~i~~~v~~ 723 (758)
T 3pxi_A 709 GARPLRRAIQKHVED 723 (758)
T ss_dssp TTTTHHHHHHHHTHH
T ss_pred CChHHHHHHHHHHHH
Confidence 667898888876443
No 67
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.68 E-value=1.9e-15 Score=166.16 Aligned_cols=224 Identities=17% Similarity=0.184 Sum_probs=157.3
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCc--eEEEEcCCCChHHHHHHHHHHhc----CCCeEEeechhH
Q 043051 302 GVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPK--GVLLHGPPGTGKTLLAKAIAGEA----GVPFFAANGTDF 375 (845)
Q Consensus 302 ~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~Pr--gVLL~GPPGTGKT~LArALA~el----g~pfi~vs~sdf 375 (845)
...+++++|.++..+.|...+...... ..+. .++|+||||||||++++++++.+ +.+++.++|+..
T Consensus 13 ~~~p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 13 SYVPKRLPHREQQLQQLDILLGNWLRN--------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 84 (389)
T ss_dssp TCCCSCCTTCHHHHHHHHHHHHHHHHS--------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHcC--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence 344589999999888888776543211 1234 89999999999999999999988 678999997653
Q ss_pred HH------hhh----------hhhhhhHH-HHHHHHH-hcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhh
Q 043051 376 VE------MFV----------GVAASRVK-DLFASAR-SFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEM 437 (845)
Q Consensus 376 ~~------~~v----------G~~~~~vr-~lF~~A~-~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~em 437 (845)
.. ... +.....+. .+..... ...|.||+|||+|.+ +......|..++...
T Consensus 85 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l------------~~~~~~~L~~~~~~~ 152 (389)
T 1fnn_A 85 RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL------------APDILSTFIRLGQEA 152 (389)
T ss_dssp CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS------------CHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc------------chHHHHHHHHHHHhC
Confidence 21 111 11111222 2222222 234789999999998 123344444444322
Q ss_pred cCCcc-cCCcEEEEEEcCCC---CCCChhhhccCcccE-EEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHH
Q 043051 438 DGFKV-STSQVLVIGATNRL---DILDPALLRKGRFDK-IVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAEL 512 (845)
Q Consensus 438 dg~~~-~~~~ViVIaaTN~p---d~LDpALlRpgRFdr-~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~ 512 (845)
.. ...++.+|++||.+ +.+++.+.+ ||.. .+.+++++.++..+++...+...... ....+..++.+++.
T Consensus 153 ---~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~l~~~ 226 (389)
T 1fnn_A 153 ---DKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAE-GSYSEDILQMIADI 226 (389)
T ss_dssp ---HHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCT-TSSCHHHHHHHHHH
T ss_pred ---CCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHH
Confidence 11 01358899999988 678899988 7764 89999999999999999888652111 11245678888888
Q ss_pred c---------cCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 513 T---------EDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 513 t---------~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
+ .| ..+.+.++++.|...|..++...|+.+++..++...
T Consensus 227 ~~~~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~ 274 (389)
T 1fnn_A 227 TGAQTPLDTNRG-DARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV 274 (389)
T ss_dssp HSBSSTTCTTSC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred HhhcccCCCCCC-cHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 8 45 678899999999988888888899999999999877
No 68
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.67 E-value=8e-16 Score=185.85 Aligned_cols=203 Identities=19% Similarity=0.254 Sum_probs=146.7
Q ss_pred ccccccHHHHHHHHHHHHHhhCcHHHhhcCC----CCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHh---
Q 043051 306 DDFAGQEYIKRELQEIVRILKNDEEFQNKGI----YCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEM--- 378 (845)
Q Consensus 306 ~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~----~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~--- 378 (845)
++|+|++++++.+...+...+ .|. ++..++||+||||||||++|+++|..++.+|+.++|+++.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~-------~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMAR-------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHH-------TTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hhccCHHHHHHHHHHHHHHHh-------cccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 468999999998887765432 222 233479999999999999999999999999999999988653
Q ss_pred ---------hhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc-----CCcccC
Q 043051 379 ---------FVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD-----GFKVST 444 (845)
Q Consensus 379 ---------~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd-----g~~~~~ 444 (845)
|+|..... .+....+...++||||||||.+ +....+.|++++++-. |.....
T Consensus 531 ~~l~g~~~g~~g~~~~~--~l~~~~~~~~~~vl~lDEi~~~------------~~~~~~~Ll~~le~~~~~~~~g~~~~~ 596 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQGG--LLTDAVIKHPHAVLLLDEIEKA------------HPDVFNILLQVMDNGTLTDNNGRKADF 596 (758)
T ss_dssp SSSCCCCSCSHHHHHTT--HHHHHHHHCSSEEEEEETGGGS------------CHHHHHHHHHHHHHSEEEETTTEEEEC
T ss_pred hhhcCCCCCCcCccccc--hHHHHHHhCCCcEEEEeCcccc------------CHHHHHHHHHHhcCcEEEcCCCCEEec
Confidence 45533322 2344444555799999999988 4567778888887521 111122
Q ss_pred CcEEEEEEcCCCC-------------------------CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccc-
Q 043051 445 SQVLVIGATNRLD-------------------------ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRS- 498 (845)
Q Consensus 445 ~~ViVIaaTN~pd-------------------------~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~- 498 (845)
.+++||+|||... .++|+|++ |||.+|.|++|+.+++..|++.++.......
T Consensus 597 ~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~ 674 (758)
T 1r6b_X 597 RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLD 674 (758)
T ss_dssp TTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999854 57899998 9999999999999999999998886431110
Q ss_pred -----hhhhhhHHHHHHHHc--cCCcHHHHHHHHHHHHHH
Q 043051 499 -----EEEKDVLLQEIAELT--EDFTGAELQNILNEAGIL 531 (845)
Q Consensus 499 -----~~~~d~dl~~LA~~t--~GfSgaDL~~LvneAal~ 531 (845)
...++..++.++... .++..+++.++++.+...
T Consensus 675 ~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~ 714 (758)
T 1r6b_X 675 QKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKK 714 (758)
T ss_dssp HTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTH
T ss_pred HCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHH
Confidence 012345677777644 355678999988877653
No 69
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.67 E-value=3.5e-16 Score=191.58 Aligned_cols=206 Identities=23% Similarity=0.304 Sum_probs=139.5
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeEE
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA----------GVPFFA 369 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el----------g~pfi~ 369 (845)
..+.+|++++|.++..+.+.+++ .. ..+.++||+||||||||++|+++|+.+ +.+++.
T Consensus 164 ~r~~~ld~viGr~~~i~~l~~~l---~~---------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 164 AAEGKLDPVIGRDEEIRRVIQIL---LR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHH---HC---------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred HhcCCCcccCCcHHHHHHHHHHH---hc---------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 55779999999997666655544 22 124679999999999999999999987 889999
Q ss_pred eechhHH--HhhhhhhhhhHHHHHHHHHhc-CCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCc
Q 043051 370 ANGTDFV--EMFVGVAASRVKDLFASARSF-APSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQ 446 (845)
Q Consensus 370 vs~sdf~--~~~vG~~~~~vr~lF~~A~~~-aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ 446 (845)
++++.+. ..+.|....+++.+|..+... .|+||||||+|.+.+.++. .+.....+.|..++.. +.
T Consensus 232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~----~g~~~~~~~L~~~l~~--------~~ 299 (854)
T 1qvr_A 232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKA----EGAVDAGNMLKPALAR--------GE 299 (854)
T ss_dssp ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-----------------------HHHHHT--------TC
T ss_pred eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCc----cchHHHHHHHHHHHhC--------CC
Confidence 9999886 467788888999999999875 6899999999999654321 1123334455555533 44
Q ss_pred EEEEEEcCCCC----CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhh----cccchhhhhhHHHHHHHHc-----
Q 043051 447 VLVIGATNRLD----ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNK----YFRSEEEKDVLLQEIAELT----- 513 (845)
Q Consensus 447 ViVIaaTN~pd----~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~----~l~~~~~~d~dl~~LA~~t----- 513 (845)
+.+|++||.++ .+|++|.| ||+. +.|+.|+.+++.+||+.++... +... .+..+..++..+
T Consensus 300 i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i---~~~al~~~~~ls~r~i~ 373 (854)
T 1qvr_A 300 LRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRI---SDSAIIAAATLSHRYIT 373 (854)
T ss_dssp CCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEE---CHHHHHHHHHHHHHHCC
T ss_pred eEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCC---CHHHHHHHHHHHhhhcc
Confidence 88999998775 47999999 9985 9999999999999998776543 2222 344555566543
Q ss_pred cCCcHHHHHHHHHHHHHHHHHc
Q 043051 514 EDFTGAELQNILNEAGILTARK 535 (845)
Q Consensus 514 ~GfSgaDL~~LvneAal~A~r~ 535 (845)
..|.+.....++.+|+..+...
T Consensus 374 ~~~lp~kai~lldea~a~~~~~ 395 (854)
T 1qvr_A 374 ERRLPDKAIDLIDEAAARLRMA 395 (854)
T ss_dssp SSCTHHHHHHHHHHHHHHHHHT
T ss_pred cccChHHHHHHHHHHHHHHHhh
Confidence 4567888999999988766554
No 70
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=1.7e-15 Score=165.76 Aligned_cols=215 Identities=21% Similarity=0.213 Sum_probs=148.2
Q ss_pred ccccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-----CeE
Q 043051 294 FISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGV-----PFF 368 (845)
Q Consensus 294 ~~~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~-----pfi 368 (845)
..+.+++++.+|++++|++.+++.|...+.. .+.|. ++|+||||||||++|+++|+.+.. .+.
T Consensus 13 ~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 80 (340)
T 1sxj_C 13 LPWVEKYRPETLDEVYGQNEVITTVRKFVDE-----------GKLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVL 80 (340)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHT-----------TCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEE
T ss_pred CchHHHhCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEE
Confidence 4566678999999999999998887766531 12344 999999999999999999998743 356
Q ss_pred EeechhHHHhhhhhhhhhHHHHHHHHHh------cCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcc
Q 043051 369 AANGTDFVEMFVGVAASRVKDLFASARS------FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKV 442 (845)
Q Consensus 369 ~vs~sdf~~~~vG~~~~~vr~lF~~A~~------~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~ 442 (845)
.+++++.. +...+++.+..... ..+.|++|||+|.+. ...++.|..++++.
T Consensus 81 ~~~~~~~~------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~------------~~~~~~L~~~le~~----- 137 (340)
T 1sxj_C 81 ELNASDDR------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT------------NAAQNALRRVIERY----- 137 (340)
T ss_dssp EECTTSCC------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC------------HHHHHHHHHHHHHT-----
T ss_pred EEcCcccc------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC------------HHHHHHHHHHHhcC-----
Confidence 66665421 12334444333221 136799999999982 34566777777663
Q ss_pred cCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHH
Q 043051 443 STSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQ 522 (845)
Q Consensus 443 ~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~ 522 (845)
+..+.+|.+||.+..+.+++.+ |+. .+.+..++.++..+++...+...++.. .+..+..++..+.| ..+.+.
T Consensus 138 -~~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i---~~~~~~~i~~~s~G-~~r~~~ 209 (340)
T 1sxj_C 138 -TKNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKL---SPNAEKALIELSNG-DMRRVL 209 (340)
T ss_dssp -TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCB---CHHHHHHHHHHHTT-CHHHHH
T ss_pred -CCCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCC-CHHHHH
Confidence 3347778889999999999999 654 789999999999999998886555443 34557778887766 444454
Q ss_pred HHHHHHHHHHHHcCCCccCHHHHHHHHHh
Q 043051 523 NILNEAGILTARKDLDYIGQEELLEALKR 551 (845)
Q Consensus 523 ~LvneAal~A~r~~~~~It~edl~~Al~r 551 (845)
++++.++..+...+...|+.+++.+++..
T Consensus 210 ~~l~~~~~~~~~~~~~~it~~~v~~~~~~ 238 (340)
T 1sxj_C 210 NVLQSCKATLDNPDEDEISDDVIYECCGA 238 (340)
T ss_dssp HHTTTTTTTTCSSSCCCBCHHHHHHHTTC
T ss_pred HHHHHHHHhcCCcccccccHHHHHHHhCC
Confidence 55544432222122236898888776553
No 71
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.65 E-value=4.4e-16 Score=179.76 Aligned_cols=215 Identities=17% Similarity=0.117 Sum_probs=138.5
Q ss_pred ccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC--CCeEEeechh-HHHhhhhh
Q 043051 306 DDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAG--VPFFAANGTD-FVEMFVGV 382 (845)
Q Consensus 306 ~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg--~pfi~vs~sd-f~~~~vG~ 382 (845)
..|+|++++++.+...+.. ..++||+||||||||++|+++|..++ .+|..+++.- -.+...|.
T Consensus 22 ~~ivGq~~~i~~l~~al~~--------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH--------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHhc--------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 3588999888766544321 35899999999999999999999884 4666655531 01222221
Q ss_pred -hhhh--HHHHHHHHHhc---CCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHh----hcCCcccCCcEEEEEE
Q 043051 383 -AASR--VKDLFASARSF---APSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTE----MDGFKVSTSQVLVIGA 452 (845)
Q Consensus 383 -~~~~--vr~lF~~A~~~---aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~e----mdg~~~~~~~ViVIaa 452 (845)
.... -...|..+... .++|||||||+.+ +...+..|+.++.+ ++|.....+..++|+|
T Consensus 88 ~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~------------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~A 155 (500)
T 3nbx_X 88 LSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKA------------GPAILNTLLTAINERQFRNGAHVEKIPMRLLVAA 155 (500)
T ss_dssp BC----------CBCCTTSGGGCSEEEEESGGGC------------CHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEE
T ss_pred ccHHHHhhchhHHhhhccCCCcceeeeHHhHhhh------------cHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhc
Confidence 1000 12223322221 4679999999876 34566777777765 2232222222356778
Q ss_pred cCCCCC---CChhhhccCcccEEEEeCCCCH-hHHHHHHHHHHhhh-----------------------cccchhhhhhH
Q 043051 453 TNRLDI---LDPALLRKGRFDKIVRVGLPSK-DGRFAILKVHARNK-----------------------YFRSEEEKDVL 505 (845)
Q Consensus 453 TN~pd~---LDpALlRpgRFdr~I~v~~Pd~-eeR~eIL~~~l~~~-----------------------~l~~~~~~d~d 505 (845)
||++.. +.+++++ ||...+.++.|+. +++.+|++.+.... .... ++..
T Consensus 156 TN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v---~d~v 230 (500)
T 3nbx_X 156 SNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITL---PDHV 230 (500)
T ss_dssp ESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBC---CHHH
T ss_pred cccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccC---chHH
Confidence 886332 4469999 9999999999987 77888887543211 1111 2233
Q ss_pred HHHHHHHc---------cCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 506 LQEIAELT---------EDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 506 l~~LA~~t---------~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
.+.++... .|.|++.+..+++.|...|...+++.|+.+|+. ++..+
T Consensus 231 ~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~v 285 (500)
T 3nbx_X 231 FELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDC 285 (500)
T ss_dssp HHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGT
T ss_pred HHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhh
Confidence 44444433 588999999999999999999999999999998 54443
No 72
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.65 E-value=3.6e-16 Score=153.27 Aligned_cols=154 Identities=24% Similarity=0.372 Sum_probs=112.7
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeEE
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA----------GVPFFA 369 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el----------g~pfi~ 369 (845)
..+.+|++++|.++..+.+.+.+ .. ..+.++||+||||||||++|+++++++ +.+++.
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l---~~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~ 83 (187)
T 2p65_A 16 ARAGKLDPVIGRDTEIRRAIQIL---SR---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVS 83 (187)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHH---TS---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEE
T ss_pred HhccccchhhcchHHHHHHHHHH---hC---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEE
Confidence 45668999999998666555443 32 235689999999999999999999987 788999
Q ss_pred eechhHHH--hhhhhhhhhHHHHHHHHHhc-CCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCc
Q 043051 370 ANGTDFVE--MFVGVAASRVKDLFASARSF-APSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQ 446 (845)
Q Consensus 370 vs~sdf~~--~~vG~~~~~vr~lF~~A~~~-aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ 446 (845)
++++.+.. .+.|.....++.++..+... .|++|||||+|.+...+.. .....+..+.+..++.. ++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~---~~~~~~~~~~l~~~~~~--------~~ 152 (187)
T 2p65_A 84 LDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAV---AEGALDAGNILKPMLAR--------GE 152 (187)
T ss_dssp ECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSS---CTTSCCTHHHHHHHHHT--------TC
T ss_pred EeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccc---cccchHHHHHHHHHHhc--------CC
Confidence 99887653 24556666788888877664 6789999999999654321 11112333444444432 44
Q ss_pred EEEEEEcCCCC-----CCChhhhccCcccEEEEeCCCC
Q 043051 447 VLVIGATNRLD-----ILDPALLRKGRFDKIVRVGLPS 479 (845)
Q Consensus 447 ViVIaaTN~pd-----~LDpALlRpgRFdr~I~v~~Pd 479 (845)
+++|++||.+. .+|+++.+ ||+. +.++.|+
T Consensus 153 ~~ii~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 153 LRCIGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp SCEEEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred eeEEEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 88999998775 58999999 9984 8999886
No 73
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=2.5e-15 Score=164.15 Aligned_cols=197 Identities=14% Similarity=0.194 Sum_probs=138.8
Q ss_pred cccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC---------
Q 043051 295 ISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGV--------- 365 (845)
Q Consensus 295 ~~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~--------- 365 (845)
.|.+++++.+|++++|++++++.|...+. . ..+.|. ++|+||||||||++++++|+++..
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~--~--------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~ 71 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSD--Q--------PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKID 71 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTT--C--------TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC----
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHh--h--------CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEec
Confidence 46677899999999999998887765441 1 123355 999999999999999999996521
Q ss_pred --------------------CeEEeechhHHHhhhhhhhhhHHHHHHHHHh--------------cCCcEEEEcccchhc
Q 043051 366 --------------------PFFAANGTDFVEMFVGVAASRVKDLFASARS--------------FAPSIIFIDEIDAIG 411 (845)
Q Consensus 366 --------------------pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~~--------------~aP~ILfIDEIDaL~ 411 (845)
+++.+++++... .....++++++.+.. ..|.||+|||++.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L- 146 (354)
T 1sxj_E 72 VRQFVTASNRKLELNVVSSPYHLEITPSDMGN----NDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL- 146 (354)
T ss_dssp --------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS-
T ss_pred ceeecccccccceeeeecccceEEecHhhcCC----cchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc-
Confidence 233333332100 001135555554422 25679999999997
Q ss_pred cCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHH
Q 043051 412 SKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHA 491 (845)
Q Consensus 412 ~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l 491 (845)
+...++.|..++.+. ..+..+|.+||.++.+.+++.+ |+ ..+.|++|+.+++.++++..+
T Consensus 147 -----------~~~~~~~L~~~le~~------~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~ 206 (354)
T 1sxj_E 147 -----------TKDAQAALRRTMEKY------SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVV 206 (354)
T ss_dssp -----------CHHHHHHHHHHHHHS------TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHH
T ss_pred -----------CHHHHHHHHHHHHhh------cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHH
Confidence 345567777777763 2347888889999999999999 66 689999999999999999988
Q ss_pred hhhcccchhhh-hhHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 043051 492 RNKYFRSEEEK-DVLLQEIAELTEDFTGAELQNILNEAGIL 531 (845)
Q Consensus 492 ~~~~l~~~~~~-d~dl~~LA~~t~GfSgaDL~~LvneAal~ 531 (845)
...+... + +..+..++..+.| +.+++.++++.++..
T Consensus 207 ~~~~~~~---~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~ 243 (354)
T 1sxj_E 207 TNERIQL---ETKDILKRIAQASNG-NLRVSLLMLESMALN 243 (354)
T ss_dssp HHHTCEE---CCSHHHHHHHHHHTT-CHHHHHHHHTHHHHT
T ss_pred HHcCCCC---CcHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 7766543 3 4567888988877 677777777766543
No 74
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.65 E-value=8.8e-16 Score=185.71 Aligned_cols=193 Identities=22% Similarity=0.310 Sum_probs=137.0
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeE
Q 043051 299 ETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA----------GVPFF 368 (845)
Q Consensus 299 ~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el----------g~pfi 368 (845)
...+.+|++|+|.++.++.+.+++. . ..+.++||+||||||||++|+++|+.+ +.+++
T Consensus 173 ~~~~~~ld~iiG~~~~i~~l~~~l~---~---------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (758)
T 3pxi_A 173 IAKEDSLDPVIGRSKEIQRVIEVLS---R---------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (758)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHH---C---------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HHhhCCCCCccCchHHHHHHHHHHh---C---------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEE
Confidence 3567789999999988887766543 1 224689999999999999999999997 88899
Q ss_pred EeechhHHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEE
Q 043051 369 AANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVL 448 (845)
Q Consensus 369 ~vs~sdf~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~Vi 448 (845)
.+++ ...|.|....+++.+|..+....|+||||| + .....+.| +..++ .+.+.
T Consensus 241 ~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~-----------~~~~~~~L---~~~l~-----~~~v~ 293 (758)
T 3pxi_A 241 TLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----A-----------AIDASNIL---KPSLA-----RGELQ 293 (758)
T ss_dssp CC-------------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------CCCTT-----SSSCE
T ss_pred Eecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----C-----------chhHHHHH---HHHHh-----cCCEE
Confidence 8888 556788888999999999998889999999 1 01112222 22222 35599
Q ss_pred EEEEcCCCC-----CCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhh----cccchhhhhhHHHHHHHHc-----c
Q 043051 449 VIGATNRLD-----ILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNK----YFRSEEEKDVLLQEIAELT-----E 514 (845)
Q Consensus 449 VIaaTN~pd-----~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~----~l~~~~~~d~dl~~LA~~t-----~ 514 (845)
+|++||..+ .+|++|.| ||. .|.|+.|+.+++.+||+.++... +... .+..+..++..+ .
T Consensus 294 ~I~at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i---~~~al~~~~~~s~~~i~~ 367 (758)
T 3pxi_A 294 CIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSI---TDDAIEAAVKLSDRYISD 367 (758)
T ss_dssp EEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSC---CHHHHHHHHHHHHHSSCC
T ss_pred EEeCCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHhhccccc
Confidence 999999988 69999999 994 69999999999999999776542 2222 344455555543 4
Q ss_pred CCcHHHHHHHHHHHHHHHHHcC
Q 043051 515 DFTGAELQNILNEAGILTARKD 536 (845)
Q Consensus 515 GfSgaDL~~LvneAal~A~r~~ 536 (845)
++.+.+...++.+|+..+....
T Consensus 368 ~~~p~~ai~ll~~a~~~~~~~~ 389 (758)
T 3pxi_A 368 RFLPDKAIDLIDEAGSKVRLRS 389 (758)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHT
T ss_pred CcCCcHHHHHHHHHHHHHHhhc
Confidence 5677888899998876665443
No 75
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1.3e-15 Score=166.24 Aligned_cols=199 Identities=9% Similarity=0.008 Sum_probs=134.4
Q ss_pred ccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeEEeechhHHH
Q 043051 308 FAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA----------GVPFFAANGTDFVE 377 (845)
Q Consensus 308 VvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el----------g~pfi~vs~sdf~~ 377 (845)
+.|.++..+.|...+... +....|.+++|+||||||||++++++++++ .+.+++++|..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~~--------i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDS--------LMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHH--------HHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHHH--------hcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 455555555554443331 123357899999999999999999999988 35688999865332
Q ss_pred ----------hhhh------hhhhhHHHHHHHH--HhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcC
Q 043051 378 ----------MFVG------VAASRVKDLFASA--RSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDG 439 (845)
Q Consensus 378 ----------~~vG------~~~~~vr~lF~~A--~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg 439 (845)
.+.| .....++.+|... ....++||||||+|.|. .+..|+.++....
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--------------~q~~L~~l~~~~~- 158 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--------------SEKILQYFEKWIS- 158 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--------------CTHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--------------cchHHHHHHhccc-
Confidence 2222 2345677888875 34567899999999994 1345666665321
Q ss_pred CcccCCcEEEEEEcCCCCC----CChhhhccCccc-EEEEeCCCCHhHHHHHHHHHHhhhcccc----------------
Q 043051 440 FKVSTSQVLVIGATNRLDI----LDPALLRKGRFD-KIVRVGLPSKDGRFAILKVHARNKYFRS---------------- 498 (845)
Q Consensus 440 ~~~~~~~ViVIaaTN~pd~----LDpALlRpgRFd-r~I~v~~Pd~eeR~eIL~~~l~~~~l~~---------------- 498 (845)
....+++||+.+|..+. |++++.+ ||. ++|.|++++.++..+|++..+....-..
T Consensus 159 --~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~ 234 (318)
T 3te6_A 159 --SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNI 234 (318)
T ss_dssp --CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC
T ss_pred --ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccc
Confidence 23456999999998875 4556667 886 6899999999999999999987642100
Q ss_pred ----------------hhhhhhHHHHHHHH---ccCCcHHHHHHHHHHHHHHHHH
Q 043051 499 ----------------EEEKDVLLQEIAEL---TEDFTGAELQNILNEAGILTAR 534 (845)
Q Consensus 499 ----------------~~~~d~dl~~LA~~---t~GfSgaDL~~LvneAal~A~r 534 (845)
....+..++.+|+. ..| ..+..-++|+.|+..|.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~G-D~R~Al~ilr~A~~~ae~ 288 (318)
T 3te6_A 235 REGQNQKIPDNVIVINHKINNKITQLIAKNVANVSG-STEKAFKICEAAVEISKK 288 (318)
T ss_dssp --------CTTEEEECEECCHHHHHHHHHHHHHHHC-SHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccCHHHHHHHHHHHHhhCC-hHHHHHHHHHHHHHHHHH
Confidence 01134567777774 334 455666778888877754
No 76
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.62 E-value=1.5e-15 Score=164.72 Aligned_cols=210 Identities=23% Similarity=0.306 Sum_probs=138.0
Q ss_pred ccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHh----
Q 043051 306 DDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEM---- 378 (845)
Q Consensus 306 ~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~---- 378 (845)
++++|.+...+.+.+.+.... ..+.+|||+||||||||++|++++..+ +.||+.++|+.+.+.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 468999998888888776543 235689999999999999999999965 689999999875432
Q ss_pred -hhhhh-------hhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc-----CCcccCC
Q 043051 379 -FVGVA-------ASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD-----GFKVSTS 445 (845)
Q Consensus 379 -~vG~~-------~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd-----g~~~~~~ 445 (845)
..|.. .......|+.|. +++|||||||.+ +...+..|+.+|.+.. +......
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l------------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~ 136 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDI------------SPLMQVRLLRAIQEREVQRVGSNQTISV 136 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTC------------CHHHHHHHHHHHHSSBCCBTTBCCCCBC
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccC------------CHHHHHHHHHHHhcCEeeecCCcccccC
Confidence 12210 012334566654 489999999998 3456777778777632 1111233
Q ss_pred cEEEEEEcCCC-------CCCChhhhccCcccEEEEeCCCCHhHHHH----HHHHHHhhh----cccchhhhhhHHHHHH
Q 043051 446 QVLVIGATNRL-------DILDPALLRKGRFDKIVRVGLPSKDGRFA----ILKVHARNK----YFRSEEEKDVLLQEIA 510 (845)
Q Consensus 446 ~ViVIaaTN~p-------d~LDpALlRpgRFdr~I~v~~Pd~eeR~e----IL~~~l~~~----~l~~~~~~d~dl~~LA 510 (845)
++.||+|||.+ ..+++.|.. ||. .+.+..|+..+|.+ ++..++... +.......+..++.+.
T Consensus 137 ~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~ 213 (304)
T 1ojl_A 137 DVRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLI 213 (304)
T ss_dssp CCEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHH
T ss_pred CeEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHH
Confidence 58999999986 235666766 665 56666777666544 444444332 1111112345577777
Q ss_pred HHc-cCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Q 043051 511 ELT-EDFTGAELQNILNEAGILTARKDLDYIGQEELLE 547 (845)
Q Consensus 511 ~~t-~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~ 547 (845)
... +| +.++|.+++..|+..+ ....|+.+|+..
T Consensus 214 ~~~wpG-nvReL~~~l~~~~~~~---~~~~i~~~~l~~ 247 (304)
T 1ojl_A 214 HYDWPG-NIRELENAIERAVVLL---TGEYISERELPL 247 (304)
T ss_dssp HCCCSS-HHHHHHHHHHHHHHHC---CSSSBCGGGSCG
T ss_pred cCCCCC-CHHHHHHHHHHHHHhC---CCCcccHHhhhh
Confidence 766 44 6779999999887654 335688777753
No 77
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.58 E-value=3.2e-16 Score=184.73 Aligned_cols=227 Identities=17% Similarity=0.148 Sum_probs=144.5
Q ss_pred ccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEe----echhHHHh---
Q 043051 306 DDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAA----NGTDFVEM--- 378 (845)
Q Consensus 306 ~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~v----s~sdf~~~--- 378 (845)
..|+|++.+|+.+...+..- .+........+...++||+||||||||+||+++|+.++.+++.. +++++...
T Consensus 295 ~~I~G~e~vk~al~~~l~~g-~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGG-VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCC-CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred chhcChHHHHHHHHHHHhCC-CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 56899999887663322100 00000001122234899999999999999999999998766543 22222211
Q ss_pred --hhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc------CCc-ccCCcEEE
Q 043051 379 --FVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD------GFK-VSTSQVLV 449 (845)
Q Consensus 379 --~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd------g~~-~~~~~ViV 449 (845)
+.|.. ......+..| ..+||||||||.+ +...+..|++++++-. |.. ..+.++.|
T Consensus 374 ~~~~g~~-~~~~G~l~~A---~~gil~IDEid~l------------~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~v 437 (595)
T 3f9v_A 374 EKGTGEY-YLEAGALVLA---DGGIAVIDEIDKM------------RDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAV 437 (595)
T ss_dssp GGGTSSC-SEEECHHHHH---SSSEECCTTTTCC------------CSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEE
T ss_pred ccccccc-cccCCeeEec---CCCcEEeehhhhC------------CHhHhhhhHHHHhCCEEEEecCCcEEEecCceEE
Confidence 11110 0011233344 3489999999998 3355677777776521 111 12345899
Q ss_pred EEEcCCCC-------------CCChhhhccCcccE-EEEeCCCCHhHHHHHHHHHHhhhcc-------cch---------
Q 043051 450 IGATNRLD-------------ILDPALLRKGRFDK-IVRVGLPSKDGRFAILKVHARNKYF-------RSE--------- 499 (845)
Q Consensus 450 IaaTN~pd-------------~LDpALlRpgRFdr-~I~v~~Pd~eeR~eIL~~~l~~~~l-------~~~--------- 499 (845)
|||||++. .|+++|++ |||. .+..+.|+.+ ...|.+..+..... ...
T Consensus 438 IaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~a 514 (595)
T 3f9v_A 438 IAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYA 514 (595)
T ss_dssp EEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHH
T ss_pred EEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHH
Confidence 99999986 89999999 9985 5556677777 77777766643221 000
Q ss_pred ------hhhhhHHHHHHHH--------------ccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 500 ------EEKDVLLQEIAEL--------------TEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 500 ------~~~d~dl~~LA~~--------------t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
..++...+.|... ..+.|.+.+.++++.|...|..++++.|+.+|+.+|+.-.
T Consensus 515 r~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~ 587 (595)
T 3f9v_A 515 RKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIM 587 (595)
T ss_dssp HHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 0011223334433 3577999999999999999999999999999999999765
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.57 E-value=8.7e-15 Score=179.30 Aligned_cols=209 Identities=23% Similarity=0.260 Sum_probs=144.0
Q ss_pred cccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHh---
Q 043051 305 FDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEM--- 378 (845)
Q Consensus 305 F~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~--- 378 (845)
+++|+|++++++.+...+...+..- ....++..++||+||||||||++|+++|..+ +.+|+.++|+++.+.
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~---~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGL---KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGC---SCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhccc---CCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 4678999999999988876543210 0011223589999999999999999999998 789999999877543
Q ss_pred ---------hhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc-----CCcccC
Q 043051 379 ---------FVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD-----GFKVST 444 (845)
Q Consensus 379 ---------~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd-----g~~~~~ 444 (845)
|+|... ...+....+...++||||||||.+ +...++.|+++|.+-. |...+.
T Consensus 634 s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l------------~~~~~~~Ll~~l~~~~~~~~~g~~vd~ 699 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKA------------HPDVFNILLQILDDGRLTDSHGRTVDF 699 (854)
T ss_dssp GGC----------------CHHHHHHHCSSEEEEESSGGGS------------CHHHHHHHHHHHTTTEECCSSSCCEEC
T ss_pred HHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEeccccc------------CHHHHHHHHHHhccCceECCCCCEecc
Confidence 122221 123334444445689999999988 4566777777776521 111122
Q ss_pred CcEEEEEEcCCC--------------------------CCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccc
Q 043051 445 SQVLVIGATNRL--------------------------DILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRS 498 (845)
Q Consensus 445 ~~ViVIaaTN~p--------------------------d~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~ 498 (845)
.+++||+|||.. ..+.|+|+. ||+..+.+.+|+.+++..|+..++.......
T Consensus 700 ~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~ 777 (854)
T 1qvr_A 700 RNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARL 777 (854)
T ss_dssp TTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 358899999972 246788888 9999999999999999999988776421100
Q ss_pred ------hhhhhhHHHHHHHHcc--CCcHHHHHHHHHHHHHHH
Q 043051 499 ------EEEKDVLLQEIAELTE--DFTGAELQNILNEAGILT 532 (845)
Q Consensus 499 ------~~~~d~dl~~LA~~t~--GfSgaDL~~LvneAal~A 532 (845)
...++..++.|+.... .+..++|.++++.+...+
T Consensus 778 ~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~ 819 (854)
T 1qvr_A 778 AEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETP 819 (854)
T ss_dssp HTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHH
T ss_pred HhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHH
Confidence 1124566778887655 557889999998876554
No 79
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.53 E-value=2.4e-14 Score=138.11 Aligned_cols=114 Identities=17% Similarity=0.216 Sum_probs=84.9
Q ss_pred ccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHhhhhh
Q 043051 306 DDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEMFVGV 382 (845)
Q Consensus 306 ~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~~vG~ 382 (845)
++++|.+...+.+.+.+..+.. .+.+|||+||||||||++|++++..+ +.||+ ++|+.+.+.
T Consensus 1 ~~iiG~s~~~~~~~~~~~~~a~----------~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 1 VELIGRSEWINQYRRRLQQLSE----------TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp ---CCSSHHHHHHHHHHHHHTT----------CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CCceeCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 3688999888888877765432 24679999999999999999999987 78999 999876543
Q ss_pred hhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCC
Q 043051 383 AASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLD 457 (845)
Q Consensus 383 ~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd 457 (845)
......|+.+. +++|||||||.+ +...+..|++++.. ...++.+|++||.+-
T Consensus 66 --~~~~~~~~~a~---~g~l~ldei~~l------------~~~~q~~Ll~~l~~------~~~~~~~I~~t~~~~ 117 (145)
T 3n70_A 66 --PQLNDFIALAQ---GGTLVLSHPEHL------------TREQQYHLVQLQSQ------EHRPFRLIGIGDTSL 117 (145)
T ss_dssp --SCHHHHHHHHT---TSCEEEECGGGS------------CHHHHHHHHHHHHS------SSCSSCEEEEESSCH
T ss_pred --hhhhcHHHHcC---CcEEEEcChHHC------------CHHHHHHHHHHHhh------cCCCEEEEEECCcCH
Confidence 34566677764 489999999999 34566777777733 233478899998753
No 80
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.52 E-value=8.8e-15 Score=140.92 Aligned_cols=112 Identities=16% Similarity=0.287 Sum_probs=85.5
Q ss_pred cccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhhhhhhhhh
Q 043051 307 DFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASR 386 (845)
Q Consensus 307 dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~vG~~~~~ 386 (845)
+++|.++..+.+.+.+..... .+.+|||+||||||||++|++++..++ ||+.++|+++.+.+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~----------~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK----------RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT----------CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 588999998888887765421 246799999999999999999999888 99999999875533
Q ss_pred HHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCC
Q 043051 387 VKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRL 456 (845)
Q Consensus 387 vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~p 456 (845)
...+|+.+. +++|||||||.+ +...+..|++++.+.. ..++.+|++||.+
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l------------~~~~q~~Ll~~l~~~~-----~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQY------------SRNIQTGITFIIGKAE-----RCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTC------------CHHHHHHHHHHHHHHT-----TTTCEEEEEEEEC
T ss_pred hhhHHHhCC---CCeEEEeChHHC------------CHHHHHHHHHHHHhCC-----CCCEEEEEecCCC
Confidence 456677664 489999999998 3456777888887742 3347889999865
No 81
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.51 E-value=3.7e-13 Score=149.26 Aligned_cols=231 Identities=16% Similarity=0.127 Sum_probs=152.5
Q ss_pred CCcccccccHHHHHHHHHHH-HHhhCcHHHhhcCCCCCceEEE--EcCCCChHHHHHHHHHHhc---------CCCeEEe
Q 043051 303 VTFDDFAGQEYIKRELQEIV-RILKNDEEFQNKGIYCPKGVLL--HGPPGTGKTLLAKAIAGEA---------GVPFFAA 370 (845)
Q Consensus 303 ~tF~dVvG~de~k~eL~eiv-~~Lk~p~~~~~~g~~~PrgVLL--~GPPGTGKT~LArALA~el---------g~pfi~v 370 (845)
...++++|.+...+.|.+.+ ...... ....+..++| +||||||||+|++++++++ +.+++++
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~------~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSG------AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTS------SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcC------CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 34578999998888887776 543211 0023568999 9999999999999998876 5678888
Q ss_pred echh------HHHhhh---h-------hhhhh-HHHHHHHHH-hcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHH
Q 043051 371 NGTD------FVEMFV---G-------VAASR-VKDLFASAR-SFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQ 432 (845)
Q Consensus 371 s~sd------f~~~~v---G-------~~~~~-vr~lF~~A~-~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~q 432 (845)
+|.. +..... | ..... ...+..... ...|.+|+|||+|.+...+. ...+....+..
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~------~~~~~l~~l~~ 166 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR------IAAEDLYTLLR 166 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT------SCHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC------cchHHHHHHHH
Confidence 8742 221111 1 11111 222222222 23578999999999953211 12233333444
Q ss_pred HHHhhcCCcccC--CcEEEEEEcCCCCC---CC---hhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhh
Q 043051 433 ILTEMDGFKVST--SQVLVIGATNRLDI---LD---PALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDV 504 (845)
Q Consensus 433 LL~emdg~~~~~--~~ViVIaaTN~pd~---LD---pALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~ 504 (845)
++... .... .++.+|++||.++. ++ +.+.+ ||...+.+++++.++..+++...+...... ....+.
T Consensus 167 ~~~~~---~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~-~~~~~~ 240 (412)
T 1w5s_A 167 VHEEI---PSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRD-TVWEPR 240 (412)
T ss_dssp HHHHS---CCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCT-TSCCHH
T ss_pred HHHhc---ccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCC-CCCChH
Confidence 44442 1112 56889988886652 34 66666 666669999999999999998877543211 112345
Q ss_pred HHHHHHHHcc------CCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 505 LLQEIAELTE------DFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 505 dl~~LA~~t~------GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
.+..+++.+. | .++.+.+++..|...+...+...++.+++..++...
T Consensus 241 ~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 241 HLELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp HHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 6778888888 7 677889999998888888787889999999888765
No 82
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.49 E-value=2.1e-13 Score=161.09 Aligned_cols=226 Identities=23% Similarity=0.312 Sum_probs=143.3
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCe---EEeechh-
Q 043051 299 ETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPF---FAANGTD- 374 (845)
Q Consensus 299 ~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pf---i~vs~sd- 374 (845)
+.++.+|++++|++.+++.+...+.. ...++|+||||||||+||+++|+.+.... +.+.+..
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~~--------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~ 99 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAANQ--------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPE 99 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHHT--------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTT
T ss_pred cccccccceEECchhhHhhccccccC--------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcc
Confidence 46788999999999988777665531 24799999999999999999999874321 1111110
Q ss_pred -----------------HHHhhh--------------------------------------hhhhhhHHHHHHH------
Q 043051 375 -----------------FVEMFV--------------------------------------GVAASRVKDLFAS------ 393 (845)
Q Consensus 375 -----------------f~~~~v--------------------------------------G~~~~~vr~lF~~------ 393 (845)
+.+... .........+|..
T Consensus 100 ~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~ 179 (604)
T 3k1j_A 100 DENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPF 179 (604)
T ss_dssp CTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC
T ss_pred cccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechh
Confidence 000000 0000011122210
Q ss_pred -----------------HHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc----CC-----------c
Q 043051 394 -----------------ARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD----GF-----------K 441 (845)
Q Consensus 394 -----------------A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd----g~-----------~ 441 (845)
.....+++|||||+|.+ +...+..|+++|.+-. +. .
T Consensus 180 ~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l------------~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~ 247 (604)
T 3k1j_A 180 QSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATL------------SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTE 247 (604)
T ss_dssp ----CCCCGGGGEECCHHHHTTTSEEEETTGGGS------------CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCS
T ss_pred hcCCccccccccccCceeeecCCCEEEEechhhC------------CHHHHHHHHHHHHcCcEEecccccccccccCCCC
Confidence 11124679999999998 4567888888887521 11 1
Q ss_pred ccCCcEEEEEEcCCC--CCCChhhhccCccc---EEEEeCCC---CHhHHHHHHHHHHhhhcc--cchhhhhhHHHHHHH
Q 043051 442 VSTSQVLVIGATNRL--DILDPALLRKGRFD---KIVRVGLP---SKDGRFAILKVHARNKYF--RSEEEKDVLLQEIAE 511 (845)
Q Consensus 442 ~~~~~ViVIaaTN~p--d~LDpALlRpgRFd---r~I~v~~P---d~eeR~eIL~~~l~~~~l--~~~~~~d~dl~~LA~ 511 (845)
..+.++.||++||+. ..++++|++ ||+ ..+.++.. +.+....+++...+.... ......+..+..+.+
T Consensus 248 ~~p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~ 325 (604)
T 3k1j_A 248 PVPCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVR 325 (604)
T ss_dssp CEECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHH
T ss_pred ccceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHH
Confidence 112358899999987 679999999 886 45555432 234455555444332210 001113344555554
Q ss_pred Hc---cCC------cHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 512 LT---EDF------TGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 512 ~t---~Gf------SgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
.. .|- +.+++.++++.|..+|...+.+.|+.+|+.+|+.+.
T Consensus 326 ~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~~ 375 (604)
T 3k1j_A 326 EAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKMA 375 (604)
T ss_dssp HHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred HHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHhh
Confidence 33 553 689999999999999988899999999999999764
No 83
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.40 E-value=1.7e-12 Score=145.37 Aligned_cols=215 Identities=21% Similarity=0.299 Sum_probs=138.7
Q ss_pred cccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHh---
Q 043051 305 FDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEM--- 378 (845)
Q Consensus 305 F~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~--- 378 (845)
+++++|.+...+.+.+.+..+... ..+|||+|++|||||++|+++.... +.||+.++|+.+.+.
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~----------~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCA----------ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTC----------CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcCC----------CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 557888887777777766654432 3568999999999999999998776 479999999875432
Q ss_pred --hhhhh-------hhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHh-----hcCCcccC
Q 043051 379 --FVGVA-------ASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTE-----MDGFKVST 444 (845)
Q Consensus 379 --~vG~~-------~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~e-----mdg~~~~~ 444 (845)
..|.. ......+|+.|.. ++||||||+.+ +...+..|+++|++ +.+.....
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l------------~~~~q~~Ll~~l~~~~~~~~g~~~~~~ 270 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELADG---GTLFLDEIGEL------------SLEAQAKLLRVIESGKFYRLGGRKEIE 270 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTTT---SEEEEESGGGC------------CHHHHHHHHHHHHHSEECCBTCCSBEE
T ss_pred HHhcCCCCCCCCCcccccCCceeeCCC---cEEEEcChhhC------------CHHHHHHHHHHHhcCcEEeCCCCceee
Confidence 22211 0123456777654 89999999999 56788899999887 22222223
Q ss_pred CcEEEEEEcCCCCCCChhhhccCcccE-------EEEeCCCCHhHHHHHHH----HHHhhh----cccchhhhhhHHHHH
Q 043051 445 SQVLVIGATNRLDILDPALLRKGRFDK-------IVRVGLPSKDGRFAILK----VHARNK----YFRSEEEKDVLLQEI 509 (845)
Q Consensus 445 ~~ViVIaaTN~pd~LDpALlRpgRFdr-------~I~v~~Pd~eeR~eIL~----~~l~~~----~l~~~~~~d~dl~~L 509 (845)
.++.||+|||..- ..+...|+|.. .+.+..|+..+|.+-+. .++... +..........++.+
T Consensus 271 ~~~rii~at~~~l---~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l 347 (387)
T 1ny5_A 271 VNVRILAATNRNI---KELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELL 347 (387)
T ss_dssp CCCEEEEEESSCH---HHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHH
T ss_pred ccEEEEEeCCCCH---HHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 3588999999753 23444455432 46678888888765443 222221 111111233445555
Q ss_pred HHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 043051 510 AELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALK 550 (845)
Q Consensus 510 A~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~ 550 (845)
....---+-++|++++..|++.+ ....|+.+|+...++
T Consensus 348 ~~~~wpGNvreL~~~i~~~~~~~---~~~~i~~~~l~~~~~ 385 (387)
T 1ny5_A 348 LSYPWYGNVRELKNVIERAVLFS---EGKFIDRGELSCLVN 385 (387)
T ss_dssp HHSCCTTHHHHHHHHHHHHHHHC---CSSEECHHHHHHHC-
T ss_pred HhCCCCcHHHHHHHHHHHHHHhC---CCCcCcHHHCcHhhh
Confidence 54431114459999999988665 345799998865543
No 84
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.39 E-value=5.1e-12 Score=138.32 Aligned_cols=159 Identities=12% Similarity=0.157 Sum_probs=111.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCe------------------------EEeechhHHHhhhhhhhhhHHHHHH
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIAGEAGVPF------------------------FAANGTDFVEMFVGVAASRVKDLFA 392 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA~elg~pf------------------------i~vs~sdf~~~~vG~~~~~vr~lF~ 392 (845)
+.|.++||+||||||||++|+++|+.+..+. +.+++.+ .-...+...++++++
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~---~~~~~~i~~ir~l~~ 98 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK---GKNTLGVDAVREVTE 98 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT---TCSSBCHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc---cCCCCCHHHHHHHHH
Confidence 4577899999999999999999999876432 2222210 000123456788888
Q ss_pred HHHhc----CCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCc
Q 043051 393 SARSF----APSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGR 468 (845)
Q Consensus 393 ~A~~~----aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgR 468 (845)
.+... ...|++|||+|.+ +....+.|+..|++ .+.++++|.+||.++.+.+++++++
T Consensus 99 ~~~~~~~~~~~kvviIdead~l------------~~~a~naLLk~lEe------p~~~~~~Il~t~~~~~l~~ti~SRc- 159 (334)
T 1a5t_A 99 KLNEHARLGGAKVVWVTDAALL------------TDAAANALLKTLEE------PPAETWFFLATREPERLLATLRSRC- 159 (334)
T ss_dssp HTTSCCTTSSCEEEEESCGGGB------------CHHHHHHHHHHHTS------CCTTEEEEEEESCGGGSCHHHHTTS-
T ss_pred HHhhccccCCcEEEEECchhhc------------CHHHHHHHHHHhcC------CCCCeEEEEEeCChHhCcHHHhhcc-
Confidence 77532 3579999999999 23344555555443 3455888889999999999999944
Q ss_pred ccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHH
Q 043051 469 FDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEA 528 (845)
Q Consensus 469 Fdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneA 528 (845)
..+.|++|+.++..+++.... .+ ++..+..+++.+.| +.+.+.+++..+
T Consensus 160 --~~~~~~~~~~~~~~~~L~~~~---~~-----~~~~~~~l~~~s~G-~~r~a~~~l~~~ 208 (334)
T 1a5t_A 160 --RLHYLAPPPEQYAVTWLSREV---TM-----SQDALLAALRLSAG-SPGAALALFQGD 208 (334)
T ss_dssp --EEEECCCCCHHHHHHHHHHHC---CC-----CHHHHHHHHHHTTT-CHHHHHHTTSSH
T ss_pred --eeeeCCCCCHHHHHHHHHHhc---CC-----CHHHHHHHHHHcCC-CHHHHHHHhccc
Confidence 479999999999999887654 12 34556778888777 566666665544
No 85
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.31 E-value=1.3e-12 Score=167.52 Aligned_cols=155 Identities=20% Similarity=0.239 Sum_probs=106.3
Q ss_pred CCCCCcccccccHHHHHHHHHHHHH-hhC----------cHHHhh------cCCC----------CCce--EEEEcCCCC
Q 043051 300 TTGVTFDDFAGQEYIKRELQEIVRI-LKN----------DEEFQN------KGIY----------CPKG--VLLHGPPGT 350 (845)
Q Consensus 300 ~~~~tF~dVvG~de~k~eL~eiv~~-Lk~----------p~~~~~------~g~~----------~Prg--VLL~GPPGT 350 (845)
.+.++|+||.|.+++|+.+.+.+.+ ++. ++.|+. .|.. +|+| +||||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 4568999999999999999988877 422 445555 2332 6677 999999999
Q ss_pred hHHHHHHHHHHhc---CCCeEEeechh----HH--------Hhhhhh----hhhhHHHHHHHHHhcCCcEEEEcccchhc
Q 043051 351 GKTLLAKAIAGEA---GVPFFAANGTD----FV--------EMFVGV----AASRVKDLFASARSFAPSIIFIDEIDAIG 411 (845)
Q Consensus 351 GKT~LArALA~el---g~pfi~vs~sd----f~--------~~~vG~----~~~~vr~lF~~A~~~aP~ILfIDEIDaL~ 411 (845)
|||+||++++.+. |-|.+.++..+ +. +.+++. ++..++.+|..|+..+||+||+|++|+|.
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999998877 55655555543 33 445566 78899999999999999999999999999
Q ss_pred cCCCCC-CCCC-CchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCC
Q 043051 412 SKRGGP-DIGG-GGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRL 456 (845)
Q Consensus 412 ~~R~~~-~~~~-~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~p 456 (845)
+.+... ..+. ........++|+|.+|++.....+ |+|| +||+.
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~-v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN-TLLI-FINQI 1218 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTT-CEEE-EEECE
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhccCC-eEEE-Eeccc
Confidence 884211 1111 123445569999999998665555 7777 77764
No 86
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.27 E-value=2.4e-11 Score=131.86 Aligned_cols=142 Identities=11% Similarity=0.162 Sum_probs=103.8
Q ss_pred ccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc------CCCeEEeechhHHHhhhhhh
Q 043051 310 GQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA------GVPFFAANGTDFVEMFVGVA 383 (845)
Q Consensus 310 G~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el------g~pfi~vs~sdf~~~~vG~~ 383 (845)
|++++.+.|...+.. | + +..+|||||||||||++|+++|+.+ ...++.+++++ ...+
T Consensus 1 g~~~~~~~L~~~i~~----------~-~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-----~~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEK----------S-E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-----ENIG 63 (305)
T ss_dssp ---CHHHHHHHHHHT----------C-S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS-----SCBC
T ss_pred ChHHHHHHHHHHHHC----------C-C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc-----CCCC
Confidence 566666666665431 1 1 3479999999999999999999864 34677777642 0134
Q ss_pred hhhHHHHHHHHHhcC----CcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCC
Q 043051 384 ASRVKDLFASARSFA----PSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDIL 459 (845)
Q Consensus 384 ~~~vr~lF~~A~~~a----P~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~L 459 (845)
...+|++++.+.... ..|++|||+|.+ +...++.|+..|++ ++.++++|.+||.+..|
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~l------------t~~a~naLLk~LEe------p~~~t~fIl~t~~~~kl 125 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERM------------TQQAANAFLKALEE------PPEYAVIVLNTRRWHYL 125 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGB------------CHHHHHHTHHHHHS------CCTTEEEEEEESCGGGS
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHh------------CHHHHHHHHHHHhC------CCCCeEEEEEECChHhC
Confidence 556888888886422 369999999999 34456666666665 34558888888889999
Q ss_pred ChhhhccCcccEEEEeCCCCHhHHHHHHHHHH
Q 043051 460 DPALLRKGRFDKIVRVGLPSKDGRFAILKVHA 491 (845)
Q Consensus 460 DpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l 491 (845)
.|++++ | ++.|++|+.++..+.+...+
T Consensus 126 ~~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 126 LPTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp CHHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred hHHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 999999 6 78999999999999988776
No 87
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.25 E-value=3.7e-11 Score=119.02 Aligned_cols=136 Identities=18% Similarity=0.158 Sum_probs=87.7
Q ss_pred cCCCCCccccccc-HHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCeEEeech
Q 043051 299 ETTGVTFDDFAGQ-EYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA----GVPFFAANGT 373 (845)
Q Consensus 299 ~~~~~tF~dVvG~-de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el----g~pfi~vs~s 373 (845)
+..+.+|+++++. +..++.+..+..++.+.. ...+.+++|+||||||||+|++++++.+ |..++.+++.
T Consensus 3 r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~ 76 (180)
T 3ec2_A 3 RYWNANLDTYHPKNVSQNRALLTIRVFVHNFN------PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTK 76 (180)
T ss_dssp SCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCC------GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHH
T ss_pred hhhhCccccccCCCHHHHHHHHHHHHHHHhcc------ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 3567899999974 344455545555544322 2236789999999999999999999876 7788888988
Q ss_pred hHHHhhhhhhh-hhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEE
Q 043051 374 DFVEMFVGVAA-SRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGA 452 (845)
Q Consensus 374 df~~~~vG~~~-~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaa 452 (845)
++.+.+..... .....++.... .|.+|+|||++..+ .+......+.+++.... ..+ ..+|.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~--~~~llilDE~~~~~----------~~~~~~~~l~~ll~~~~----~~~-~~ii~t 139 (180)
T 3ec2_A 77 DLIFRLKHLMDEGKDTKFLKTVL--NSPVLVLDDLGSER----------LSDWQRELISYIITYRY----NNL-KSTIIT 139 (180)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHH--TCSEEEEETCSSSC----------CCHHHHHHHHHHHHHHH----HTT-CEEEEE
T ss_pred HHHHHHHHHhcCchHHHHHHHhc--CCCEEEEeCCCCCc----------CCHHHHHHHHHHHHHHH----HcC-CCEEEE
Confidence 87765433211 11112233322 57899999998652 23455667777776642 123 456667
Q ss_pred cCCCC
Q 043051 453 TNRLD 457 (845)
Q Consensus 453 TN~pd 457 (845)
||.+.
T Consensus 140 sn~~~ 144 (180)
T 3ec2_A 140 TNYSL 144 (180)
T ss_dssp CCCCS
T ss_pred cCCCh
Confidence 77654
No 88
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.23 E-value=7.3e-11 Score=157.27 Aligned_cols=140 Identities=21% Similarity=0.333 Sum_probs=99.4
Q ss_pred CceEEEEcCCCChHHHHHHH-HHHhcCCCeEEeechhHHHhhhhhhhhhHHHHHHHHH---------------hcCCcEE
Q 043051 339 PKGVLLHGPPGTGKTLLAKA-IAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASAR---------------SFAPSII 402 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArA-LA~elg~pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~---------------~~aP~IL 402 (845)
.+++||+||||||||++|+. ++...+.+++.++++...+ ...+...++... ...++||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 47999999999999999955 4555578888888775432 233444444321 1234799
Q ss_pred EEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccC-------CcEEEEEEcCCCC-----CCChhhhccCccc
Q 043051 403 FIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVST-------SQVLVIGATNRLD-----ILDPALLRKGRFD 470 (845)
Q Consensus 403 fIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~-------~~ViVIaaTN~pd-----~LDpALlRpgRFd 470 (845)
||||||.-...+ .+.......|.+++ +..|+.... .++.+|||+|+|. .|+++++| ||
T Consensus 1341 FiDEinmp~~d~------yg~q~~lelLRq~l-e~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf- 1410 (2695)
T 4akg_A 1341 FCDEINLPKLDK------YGSQNVVLFLRQLM-EKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA- 1410 (2695)
T ss_dssp EEETTTCSCCCS------SSCCHHHHHHHHHH-HTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-
T ss_pred Eecccccccccc------cCchhHHHHHHHHH-hcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-
Confidence 999999753322 12234456666766 444443221 2489999999995 79999999 88
Q ss_pred EEEEeCCCCHhHHHHHHHHHHhhh
Q 043051 471 KIVRVGLPSKDGRFAILKVHARNK 494 (845)
Q Consensus 471 r~I~v~~Pd~eeR~eIL~~~l~~~ 494 (845)
..+.++.|+.+++..|+..+++..
T Consensus 1411 ~vi~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1411 AILYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp EEEECCCCTTTHHHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHH
Confidence 789999999999999999988653
No 89
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.15 E-value=4.3e-10 Score=127.71 Aligned_cols=216 Identities=18% Similarity=0.099 Sum_probs=129.4
Q ss_pred ccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHH-HHhcCCCeEEeechhHHHhhhhhhhh-
Q 043051 308 FAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAI-AGEAGVPFFAANGTDFVEMFVGVAAS- 385 (845)
Q Consensus 308 VvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArAL-A~elg~pfi~vs~sdf~~~~vG~~~~- 385 (845)
|.|++.+|..|.-.+. ....+ ++-.-+|||.|+||| ||+||+++ ++-+.... +.++. .....|....
T Consensus 215 I~G~e~vK~aLll~L~--GG~~k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~-ft~g~--~ss~~gLt~s~ 283 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLF--SCVGK-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGV-YVDLR--RTELTDLTAVL 283 (506)
T ss_dssp STTCHHHHHHHHHHHT--TCCSS-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEE-EEEGG--GCCHHHHSEEE
T ss_pred cCCCHHHHHHHHHHHc--CCccc-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeE-EecCC--CCCccCceEEE
Confidence 7899998877654331 11110 111237999999999 99999999 77654322 22221 0111111111
Q ss_pred -------hHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHh----hcCCcccCCcEEEEEEcC
Q 043051 386 -------RVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTE----MDGFKVSTSQVLVIGATN 454 (845)
Q Consensus 386 -------~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~e----mdg~~~~~~~ViVIaaTN 454 (845)
.-...+..|. .+|+|||||+.+ +...+..|++.+++ +.|. .-+.++.||||+|
T Consensus 284 r~~tG~~~~~G~l~LAd---gGvl~lDEIn~~------------~~~~qsaLlEaMEe~~VtI~G~-~lparf~VIAA~N 347 (506)
T 3f8t_A 284 KEDRGWALRAGAAVLAD---GGILAVDHLEGA------------PEPHRWALMEAMDKGTVTVDGI-ALNARCAVLAAIN 347 (506)
T ss_dssp EESSSEEEEECHHHHTT---TSEEEEECCTTC------------CHHHHHHHHHHHHHSEEEETTE-EEECCCEEEEEEC
T ss_pred EcCCCcccCCCeeEEcC---CCeeehHhhhhC------------CHHHHHHHHHHHhCCcEEECCE-EcCCCeEEEEEeC
Confidence 0112344443 379999999998 45667788888876 3344 3345699999999
Q ss_pred CCC-----------CCChhhhccCcccEEEE-eCCCCHhHHH---------HHHHH---HHhhh--cccchhhh-hhHHH
Q 043051 455 RLD-----------ILDPALLRKGRFDKIVR-VGLPSKDGRF---------AILKV---HARNK--YFRSEEEK-DVLLQ 507 (845)
Q Consensus 455 ~pd-----------~LDpALlRpgRFdr~I~-v~~Pd~eeR~---------eIL~~---~l~~~--~l~~~~~~-d~dl~ 507 (845)
+.. .|++++++ |||..+. ++.|+.+.-. +.++. +++.. .....+.. +...+
T Consensus 348 P~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~ 425 (506)
T 3f8t_A 348 PGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEH 425 (506)
T ss_dssp CCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHH
T ss_pred cccccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHH
Confidence 875 78999999 9997553 4555543311 12222 22211 11111111 11111
Q ss_pred HH-----H--H------HccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 508 EI-----A--E------LTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 508 ~L-----A--~------~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
.. . . ...|.|++.+..+++-|..+|..++++.|+.+|+.+|+.-.
T Consensus 426 ~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~ 483 (506)
T 3f8t_A 426 WYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELV 483 (506)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 00 0 0 24578999999999999999999999999999999998866
No 90
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.14 E-value=8.5e-11 Score=101.99 Aligned_cols=73 Identities=30% Similarity=0.492 Sum_probs=69.2
Q ss_pred CCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 476 GLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 476 ~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
|+|+.++|.+||+.|+++.++. .++++..||..|+||||+||.++|++|++.|.+++...|+++||..|++++
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~----~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLT----RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 73 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEEC----TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCC----CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 6899999999999999988765 678899999999999999999999999999999999999999999999988
No 91
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.13 E-value=2.5e-10 Score=126.90 Aligned_cols=198 Identities=22% Similarity=0.307 Sum_probs=125.4
Q ss_pred ccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC--CeEEeechhHHH-----h
Q 043051 306 DDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGV--PFFAANGTDFVE-----M 378 (845)
Q Consensus 306 ~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~--pfi~vs~sdf~~-----~ 378 (845)
.+++|.+....++.+.+..+... ...+|++|++||||+++|+++....+. +|+.++|+.+.+ .
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~----------~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKS----------KAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTS----------CSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhhhcc----------chhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 46788888888887777665432 246999999999999999999887654 399999986532 1
Q ss_pred hhhhhh-------hhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhc-----CCcccCCc
Q 043051 379 FVGVAA-------SRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMD-----GFKVSTSQ 446 (845)
Q Consensus 379 ~vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emd-----g~~~~~~~ 446 (845)
..|... ..-...|+.|.. ++||||||+.+ +...+..|+++|++-. +-....-+
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 263 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQ---GTLFLDEVGEL------------DQRVQAKLLRVLETGSFTRLGGNQKIEVD 263 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTT---SEEEEETGGGS------------CHHHHHHHHHHHHHSEECCBTCCCBEECC
T ss_pred hcCccccccCCcccccCChHhhcCC---CeEEecChhhC------------CHHHHHHHHHHHHhCCcccCCCCcceeee
Confidence 222111 122345666644 79999999999 5678889999998721 11111224
Q ss_pred EEEEEEcCCCCCCChhhhccCcccE-------EEEeCCCCHhHHHHH----HHHHHhhh----cccchhhhhhHHHHHHH
Q 043051 447 VLVIGATNRLDILDPALLRKGRFDK-------IVRVGLPSKDGRFAI----LKVHARNK----YFRSEEEKDVLLQEIAE 511 (845)
Q Consensus 447 ViVIaaTN~pd~LDpALlRpgRFdr-------~I~v~~Pd~eeR~eI----L~~~l~~~----~l~~~~~~d~dl~~LA~ 511 (845)
+.+|+|||..- ..+...|+|.. .+.+..|+..+|.+- +..++... +.......+..++.|..
T Consensus 264 ~rii~at~~~l---~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 340 (368)
T 3dzd_A 264 IRVISATNKNL---EEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMK 340 (368)
T ss_dssp CEEEEEESSCH---HHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHT
T ss_pred eEEEEecCCCH---HHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHh
Confidence 78999999643 33334455543 566777877776443 33333322 11111123444556665
Q ss_pred Hc-cCCcHHHHHHHHHHHHHHH
Q 043051 512 LT-EDFTGAELQNILNEAGILT 532 (845)
Q Consensus 512 ~t-~GfSgaDL~~LvneAal~A 532 (845)
.. +| +-++|.|++..|+..+
T Consensus 341 ~~wpG-NvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 341 QEWKG-NVRELKNLIERAVILC 361 (368)
T ss_dssp CCCTT-HHHHHHHHHHHHHHTC
T ss_pred CCCCc-HHHHHHHHHHHHHHhC
Confidence 54 33 5578888888887553
No 92
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.11 E-value=8.8e-11 Score=104.23 Aligned_cols=75 Identities=29% Similarity=0.474 Sum_probs=70.0
Q ss_pred eCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcc
Q 043051 475 VGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQK 553 (845)
Q Consensus 475 v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~k 553 (845)
-.+||.++|.+||+.++++.++. .+++++.||+.|+||||+||.++|++|++.|.++....|+++||..|+++++
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~----~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~ 82 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLT----RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 82 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEEC----TTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHcCCCCC----cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 46899999999999999988776 6788999999999999999999999999999999989999999999999984
No 93
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.10 E-value=2.4e-10 Score=115.04 Aligned_cols=104 Identities=19% Similarity=0.237 Sum_probs=69.4
Q ss_pred CCCCCcccccccHH-HHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhH
Q 043051 300 TTGVTFDDFAGQEY-IKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDF 375 (845)
Q Consensus 300 ~~~~tF~dVvG~de-~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf 375 (845)
....+|+++++.+. .++.+..+..++.... ....|++++|+||||||||+||+++++++ +.+++.++++++
T Consensus 19 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 19 ILRASLSDVDLNDDGRIKAIRFAERFVAEYE-----PGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL 93 (202)
T ss_dssp GGCCCTTSSCCSSHHHHHHHHHHHHHHHHCC-----SSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred HHcCCHhhccCCChhHHHHHHHHHHHHHHhh-----hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence 45679999998663 3334444444443221 01124799999999999999999999887 788999999887
Q ss_pred HHhhhhh-hhhhHHHHHHHHHhcCCcEEEEcccchh
Q 043051 376 VEMFVGV-AASRVKDLFASARSFAPSIIFIDEIDAI 410 (845)
Q Consensus 376 ~~~~vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDaL 410 (845)
...+... ....+..++..... +.+|+|||++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 94 FRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred HHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 7654331 11223444444433 469999999775
No 94
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.03 E-value=3.3e-10 Score=100.81 Aligned_cols=76 Identities=24% Similarity=0.454 Sum_probs=67.5
Q ss_pred CHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhccccccc
Q 043051 479 SKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQKGTFET 558 (845)
Q Consensus 479 d~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~k~~~~~ 558 (845)
|.++|.+||+.|+++.++. .+++++.||+.|+||||+||.++|++|++.|.+++...|+++||..|++++ ..
T Consensus 2 d~~~R~~Il~~~~~~~~~~----~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v----~~ 73 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVE----RGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKV----IS 73 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBC----SCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHH----TC
T ss_pred CHHHHHHHHHHHHCCCCCC----CccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHH----hc
Confidence 6789999999999988776 678999999999999999999999999999999999999999999999999 56
Q ss_pred CCCC
Q 043051 559 GQED 562 (845)
Q Consensus 559 g~e~ 562 (845)
|.++
T Consensus 74 ~~~~ 77 (88)
T 3vlf_B 74 GYKK 77 (88)
T ss_dssp ----
T ss_pred Cccc
Confidence 6544
No 95
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.87 E-value=2e-09 Score=94.28 Aligned_cols=73 Identities=16% Similarity=0.288 Sum_probs=66.9
Q ss_pred CHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcccc
Q 043051 479 SKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQKGT 555 (845)
Q Consensus 479 d~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~k~~ 555 (845)
|.++|.+||+.|+++.++. .++++..||..|+||||+||.++|++|++.|.+++...|+++||..|+.++++.
T Consensus 2 d~~~R~~Il~~~l~~~~~~----~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps 74 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLS----EEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKK 74 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBC----TTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHhCCCCCC----cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccC
Confidence 6789999999999988765 678899999999999999999999999999999998899999999999999544
No 96
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.87 E-value=2.9e-09 Score=103.46 Aligned_cols=100 Identities=19% Similarity=0.311 Sum_probs=68.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCC
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRG 415 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~ 415 (845)
...++|+||+|+|||+|++++++.+ |...+++++.++... +....|.+|+|||++.+..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~--- 97 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGN--- 97 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCS---
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccCh---
Confidence 4689999999999999999999987 777888888776542 1123578999999988621
Q ss_pred CCCCCCCchHHHHHHHHHHHhhcCCcccCCcE-EEEEEcCCCCCCC--hhhhccCcccE
Q 043051 416 GPDIGGGGAEREQGLLQILTEMDGFKVSTSQV-LVIGATNRLDILD--PALLRKGRFDK 471 (845)
Q Consensus 416 ~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~V-iVIaaTN~pd~LD--pALlRpgRFdr 471 (845)
..+..+.+++..+.. .+.. +||++...|..+. ++|.+ |+..
T Consensus 98 ---------~~~~~l~~li~~~~~----~g~~~iiits~~~p~~l~~~~~L~S--Rl~~ 141 (149)
T 2kjq_A 98 ---------EEQALLFSIFNRFRN----SGKGFLLLGSEYTPQQLVIREDLRT--RMAY 141 (149)
T ss_dssp ---------HHHHHHHHHHHHHHH----HTCCEEEEEESSCTTTSSCCHHHHH--HGGG
T ss_pred ---------HHHHHHHHHHHHHHH----cCCcEEEEECCCCHHHccccHHHHH--HHhc
Confidence 225667777766421 2223 5554443555443 88888 6643
No 97
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.86 E-value=6.4e-08 Score=104.30 Aligned_cols=188 Identities=18% Similarity=0.143 Sum_probs=115.6
Q ss_pred CCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhH-----
Q 043051 301 TGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDF----- 375 (845)
Q Consensus 301 ~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf----- 375 (845)
++...+.++|.++..+.|.+ +.. ..++|+||+|+|||+|++.++++++.+++++++...
T Consensus 8 ~~~~~~~~~gR~~el~~L~~----l~~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG----LRA------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNY 71 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH----TCS------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSC
T ss_pred CCCCHHHhcChHHHHHHHHH----hcC------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccC
Confidence 34466788999876665544 322 379999999999999999999998877888877542
Q ss_pred ------HHhhhhh-----------------------------------hhhhHHHHHHHHHhc--CCcEEEEcccchhcc
Q 043051 376 ------VEMFVGV-----------------------------------AASRVKDLFASARSF--APSIIFIDEIDAIGS 412 (845)
Q Consensus 376 ------~~~~vG~-----------------------------------~~~~vr~lF~~A~~~--aP~ILfIDEIDaL~~ 412 (845)
...+... ....+..+++..... .|.+|+|||+|.+..
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~ 151 (357)
T 2fna_A 72 ISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVK 151 (357)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGG
T ss_pred CCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhc
Confidence 1110000 012345555555442 388999999999853
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCC---------hhhhccCcccEEEEeCCCCHhHH
Q 043051 413 KRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILD---------PALLRKGRFDKIVRVGLPSKDGR 483 (845)
Q Consensus 413 ~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LD---------pALlRpgRFdr~I~v~~Pd~eeR 483 (845)
.. .......|..+.... .++.+|.+++....+. ..+ .+|+...+.+++.+.++.
T Consensus 152 ~~--------~~~~~~~l~~~~~~~-------~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e~ 214 (357)
T 2fna_A 152 LR--------GVNLLPALAYAYDNL-------KRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREEA 214 (357)
T ss_dssp CT--------TCCCHHHHHHHHHHC-------TTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHHH
T ss_pred cC--------chhHHHHHHHHHHcC-------CCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHHH
Confidence 10 011223333333331 2366666665432111 112 246667899999999999
Q ss_pred HHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHH
Q 043051 484 FAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNE 527 (845)
Q Consensus 484 ~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~Lvne 527 (845)
.+++...+...+... +. ...+...+.|+ +.-+..++..
T Consensus 215 ~~~l~~~~~~~~~~~----~~-~~~i~~~t~G~-P~~l~~~~~~ 252 (357)
T 2fna_A 215 IEFLRRGFQEADIDF----KD-YEVVYEKIGGI-PGWLTYFGFI 252 (357)
T ss_dssp HHHHHHHHHHHTCCC----CC-HHHHHHHHCSC-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCC----Cc-HHHHHHHhCCC-HHHHHHHHHH
Confidence 999988775444332 11 27788889885 4456555543
No 98
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.83 E-value=3.5e-07 Score=98.40 Aligned_cols=192 Identities=19% Similarity=0.172 Sum_probs=115.5
Q ss_pred CCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHH----
Q 043051 301 TGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFV---- 376 (845)
Q Consensus 301 ~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~---- 376 (845)
++..-+.++|.+...+.|.+.+.. | +.++|+||+|+|||+|++.++++.+ ++++++....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~ 70 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERG 70 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTT
T ss_pred CCCChHhcCChHHHHHHHHHHHhc----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeeccccccc
Confidence 444557889999877777765532 1 4799999999999999999999886 6667665431
Q ss_pred --------Hhhh--------------------hhh----hhhHHHHHHHH----HhcCCcEEEEcccchhccCCCCCCCC
Q 043051 377 --------EMFV--------------------GVA----ASRVKDLFASA----RSFAPSIIFIDEIDAIGSKRGGPDIG 420 (845)
Q Consensus 377 --------~~~v--------------------G~~----~~~vr~lF~~A----~~~aP~ILfIDEIDaL~~~R~~~~~~ 420 (845)
..+. |.. ...+..++... ....|.+|+|||++.+.....
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~----- 145 (350)
T 2qen_A 71 HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS----- 145 (350)
T ss_dssp CBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT-----
T ss_pred CCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc-----
Confidence 1110 000 12233333332 222489999999999843100
Q ss_pred CCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCC---------ChhhhccCcccEEEEeCCCCHhHHHHHHHHHH
Q 043051 421 GGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDIL---------DPALLRKGRFDKIVRVGLPSKDGRFAILKVHA 491 (845)
Q Consensus 421 ~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~L---------DpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l 491 (845)
.........|..++... .++.+|.++.....+ ...+. ||+...+.+.+.+.++..+++...+
T Consensus 146 ~~~~~~~~~L~~~~~~~-------~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~ 216 (350)
T 2qen_A 146 RGGKELLALFAYAYDSL-------PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGF 216 (350)
T ss_dssp TTTHHHHHHHHHHHHHC-------TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHhc-------CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHH
Confidence 01123333343443331 235566555432111 11122 4666789999999999999998877
Q ss_pred hhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHH
Q 043051 492 RNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILN 526 (845)
Q Consensus 492 ~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~Lvn 526 (845)
...+... .+..+..+...+.|+. .-+..++.
T Consensus 217 ~~~~~~~---~~~~~~~i~~~tgG~P-~~l~~~~~ 247 (350)
T 2qen_A 217 REVNLDV---PENEIEEAVELLDGIP-GWLVVFGV 247 (350)
T ss_dssp HTTTCCC---CHHHHHHHHHHHTTCH-HHHHHHHH
T ss_pred HHcCCCC---CHHHHHHHHHHhCCCH-HHHHHHHH
Confidence 6544332 3446778888898854 44555544
No 99
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.82 E-value=3.2e-09 Score=115.20 Aligned_cols=102 Identities=21% Similarity=0.265 Sum_probs=64.6
Q ss_pred CCCCcccccccH-HHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCeEEeechhH
Q 043051 301 TGVTFDDFAGQE-YIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA----GVPFFAANGTDF 375 (845)
Q Consensus 301 ~~~tF~dVvG~d-e~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el----g~pfi~vs~sdf 375 (845)
.+.+|+++++.+ .....+..+..++.... ...+.+++|+||||||||+||+++|.++ |.+++.++++++
T Consensus 119 ~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~------~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l 192 (308)
T 2qgz_A 119 RHIHLSDIDVNNASRMEAFSAILDFVEQYP------SAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSF 192 (308)
T ss_dssp GSCCGGGSCCCSHHHHHHHHHHHHHHHHCS------CSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHH
T ss_pred HhCCHhhCcCCChHHHHHHHHHHHHHHhcc------ccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHH
Confidence 457899999755 33333334444444221 1135799999999999999999998855 488999999888
Q ss_pred HHhhhhh-hhhhHHHHHHHHHhcCCcEEEEcccchh
Q 043051 376 VEMFVGV-AASRVKDLFASARSFAPSIIFIDEIDAI 410 (845)
Q Consensus 376 ~~~~vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDaL 410 (845)
...+.+. ....+..++.... .+.+|+|||++..
T Consensus 193 ~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 193 AIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred HHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 7654331 1111122222222 3469999999765
No 100
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.74 E-value=3.1e-09 Score=93.14 Aligned_cols=68 Identities=26% Similarity=0.282 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 481 DGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 481 eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
++|.+||+.|+++.++. .++++..||..|+||||+||.++|++|++.|.+++...|+++||..|+.++
T Consensus 1 ~~R~~Il~~~l~~~~~~----~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLA----PEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp -------------CEEC----TTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCCCCC----CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 47899999999887765 578899999999999999999999999999999998999999999999998
No 101
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.71 E-value=4.4e-09 Score=114.59 Aligned_cols=119 Identities=19% Similarity=0.274 Sum_probs=67.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCC--eEEeechhHHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCC
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEAGVP--FFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRG 415 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~elg~p--fi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~ 415 (845)
....++|+||||||||+||.++|.+.|.+ |+.+...+.++.+.......+..+++..... + +|+||+++.+.....
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~-~-LLVIDsI~aL~~~~~ 199 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQH-R-VIVIDSLKNVIGAAG 199 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHC-S-EEEEECCTTTC----
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhC-C-EEEEecccccccccc
Confidence 34557999999999999999999876544 5554212222222222333444555555553 3 999999999954432
Q ss_pred CCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhh
Q 043051 416 GPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPAL 463 (845)
Q Consensus 416 ~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpAL 463 (845)
.....+ ...+.+.+++.++.++....+ +.+|++|| +...|+++
T Consensus 200 ~~s~~G---~v~~~lrqlL~~L~~~~k~~g-vtVIlttn-p~s~deal 242 (331)
T 2vhj_A 200 GNTTSG---GISRGAFDLLSDIGAMAASRG-CVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHT-CEEEEECC-CSSCSSSH
T ss_pred cccccc---hHHHHHHHHHHHHHHHHhhCC-CEEEEEeC-CcccchhH
Confidence 111111 112345555555554433334 77888888 55566554
No 102
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.66 E-value=3.9e-07 Score=122.01 Aligned_cols=167 Identities=18% Similarity=0.170 Sum_probs=110.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCC
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDI 419 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~ 419 (845)
.|+++.||+|||||.+++++|+.+|.+++.++|++-.. ...+..+|..+.. .++.+++|||+.+
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~-~Gaw~~~DE~nr~--------- 709 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQ-IGAWGCFDEFNRL--------- 709 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHH-HTCEEEEETTTSS---------
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHh-cCCEeeehhhhhc---------
Confidence 58999999999999999999999999999999986432 3445667777665 3579999999998
Q ss_pred CCCchHHHHHHHHHHHhh-------------cCCc-ccCCcEEEEEEcCC----CCCCChhhhccCcccEEEEeCCCCHh
Q 043051 420 GGGGAEREQGLLQILTEM-------------DGFK-VSTSQVLVIGATNR----LDILDPALLRKGRFDKIVRVGLPSKD 481 (845)
Q Consensus 420 ~~~~~e~~~~L~qLL~em-------------dg~~-~~~~~ViVIaaTN~----pd~LDpALlRpgRFdr~I~v~~Pd~e 481 (845)
..+....+.+.+..+ +|-. .-...+.|++|.|+ ...|+++|.+ || +.+.+..||.+
T Consensus 710 ---~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~ 783 (2695)
T 4akg_A 710 ---DEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSG 783 (2695)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHH
T ss_pred ---ChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHH
Confidence 345555554444331 1100 01223667778884 4468999998 88 57999999998
Q ss_pred HHHHHHHHHHhhhcccchhh---hhhH-HHHHHHHc-----cCCcHHHHHHHHHHHHHH
Q 043051 482 GRFAILKVHARNKYFRSEEE---KDVL-LQEIAELT-----EDFTGAELQNILNEAGIL 531 (845)
Q Consensus 482 eR~eIL~~~l~~~~l~~~~~---~d~d-l~~LA~~t-----~GfSgaDL~~LvneAal~ 531 (845)
...+|+-... ++..... .-+. +..+.... ..|.-+.+..+++.|...
T Consensus 784 ~i~ei~l~s~---Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~l 839 (2695)
T 4akg_A 784 TIAEMILQIM---GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPL 839 (2695)
T ss_dssp HHHHHHHHHH---HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHh
Confidence 8888754322 2211000 0011 11122222 236778898888877544
No 103
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.60 E-value=7.1e-08 Score=98.38 Aligned_cols=131 Identities=17% Similarity=0.156 Sum_probs=82.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh--------cC-CCeEEeechhHHHhhh----------hhhhh--hHHHHHHHH--H
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGE--------AG-VPFFAANGTDFVEMFV----------GVAAS--RVKDLFASA--R 395 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~e--------lg-~pfi~vs~sdf~~~~v----------G~~~~--~vr~lF~~A--~ 395 (845)
+.-.|++|+||||||++|.+++.. .| .+++..++.++..... ..... ....+++.+ .
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 84 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP 84 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc
Confidence 457899999999999999887433 35 7777777665532111 11111 113344432 1
Q ss_pred hcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEe
Q 043051 396 SFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRV 475 (845)
Q Consensus 396 ~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v 475 (845)
...++||+|||++.+.+.+... . .. ..++..+... ....+-+|.+|+.+..|+.++++ |++.++++
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~-~-e~--------~rll~~l~~~--r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l 150 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAG-S-KI--------PENVQWLNTH--RHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHI 150 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTT-C-CC--------CHHHHGGGGT--TTTTCEEEEEESCGGGBCHHHHT--TEEEEEEE
T ss_pred ccCceEEEEEChhhhccCcccc-c-hh--------HHHHHHHHhc--CcCCeEEEEECCCHHHHhHHHHH--HhheEEEE
Confidence 2346899999999997654211 1 10 1244444321 22336778888889999999887 99999999
Q ss_pred CCCCHhHH
Q 043051 476 GLPSKDGR 483 (845)
Q Consensus 476 ~~Pd~eeR 483 (845)
..|....+
T Consensus 151 ~~~~~~~~ 158 (199)
T 2r2a_A 151 ASNKMGMR 158 (199)
T ss_dssp EECSSCCE
T ss_pred cCcccCcc
Confidence 88755443
No 104
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.53 E-value=7.9e-07 Score=96.97 Aligned_cols=179 Identities=13% Similarity=0.065 Sum_probs=118.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CC-CeEEeechhHHHhhhhhhhhhHHHHHHHHHh----cCCcEEEEcccch
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA---GV-PFFAANGTDFVEMFVGVAASRVKDLFASARS----FAPSIIFIDEIDA 409 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el---g~-pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDa 409 (845)
.+..+|||||+|+||+..++++++.+ +. ++..+... +...++++++.+.. ....||+|||+|.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---------PNTDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---------TTCCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---------CCCCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 45689999999999999999998765 32 22222110 12445666666542 2346999999998
Q ss_pred -hccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCC-----CCCCChhhhccCcccEEEEeCCCCHhHH
Q 043051 410 -IGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNR-----LDILDPALLRKGRFDKIVRVGLPSKDGR 483 (845)
Q Consensus 410 -L~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~-----pd~LDpALlRpgRFdr~I~v~~Pd~eeR 483 (845)
+. ....+.|...+++. +.+.++|+++++. ...+-+++.++| .++.+..++..+.
T Consensus 88 kl~------------~~~~~aLl~~le~p-----~~~~~~il~~~~~~~~~~~~k~~~~i~sr~---~~~~~~~l~~~~l 147 (343)
T 1jr3_D 88 GPN------------AAINEQLLTLTGLL-----HDDLLLIVRGNKLSKAQENAAWFTALANRS---VQVTCQTPEQAQL 147 (343)
T ss_dssp CCC------------TTHHHHHHHHHTTC-----BTTEEEEEEESCCCTTTTTSHHHHHHTTTC---EEEEECCCCTTHH
T ss_pred CCC------------hHHHHHHHHHHhcC-----CCCeEEEEEcCCCChhhHhhHHHHHHHhCc---eEEEeeCCCHHHH
Confidence 72 23455566666542 2343444444432 234667888855 5899999999999
Q ss_pred HHHHHHHHhhhcccchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Q 043051 484 FAILKVHARNKYFRSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARKDLDYIGQEELLEALKRQ 552 (845)
Q Consensus 484 ~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~~~~~It~edl~~Al~r~ 552 (845)
...++..++..++.. ++..+..++..+.| +-+++.+.+...++++ +...||.+++.+.+...
T Consensus 148 ~~~l~~~~~~~g~~i---~~~a~~~l~~~~~g-dl~~~~~elekl~l~~---~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 148 PRWVAARAKQLNLEL---DDAANQVLCYCYEG-NLLALAQALERLSLLW---PDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp HHHHHHHHHHTTCEE---CHHHHHHHHHSSTT-CHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCC---CHHHHHHHHHHhch-HHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhhh
Confidence 999999988777654 34567888887766 5555555555554443 34579999999988766
No 105
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.47 E-value=1e-07 Score=106.43 Aligned_cols=119 Identities=19% Similarity=0.165 Sum_probs=78.3
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHH-HhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhcc
Q 043051 334 KGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFV-EMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGS 412 (845)
Q Consensus 334 ~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~-~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~ 412 (845)
++++.+..++|+||||+|||+|++++++..+..++.+..++-. ..++| .....+++++||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~~~lg-------------~~~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELG-------------VAIDQFLVVFEDVKGTGG 230 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHG-------------GGTTCSCEEETTCCCSTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHHHHHH-------------HhcchhHHHHHHHHHHHH
Confidence 4677788999999999999999999999988776664433210 00111 112346789999999865
Q ss_pred -CCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCC
Q 043051 413 -KRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGL 477 (845)
Q Consensus 413 -~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~ 477 (845)
.|+. ..+.. ...+..+...+|| .+.|+.+||+++.+ +++++|||++..+....
T Consensus 231 ~~r~l---~~~~~--~~~~~~l~~~ldG------~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 231 ESRDL---PSGQG--INNLDNLRDYLDG------SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTTC---CCCSH--HHHHHTTHHHHHC------SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHhhc---cccCc--chHHHHHHHHhcC------CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 2221 11111 1123334444554 25678889999999 79999999987665533
No 106
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.40 E-value=2.6e-06 Score=114.97 Aligned_cols=139 Identities=22% Similarity=0.279 Sum_probs=92.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHH-hcCCCeEEeechhHHHhhhhhhhhhHHHHHHHH----H------------hcCCcE
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAG-EAGVPFFAANGTDFVEMFVGVAASRVKDLFASA----R------------SFAPSI 401 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~-elg~pfi~vs~sdf~~~~vG~~~~~vr~lF~~A----~------------~~aP~I 401 (845)
.+++||+||||||||++++.... ..+.+++.++++.-. ++..+...++.. + ....+|
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~T------ta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSAT------TPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTC------CHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCC------CHHHHHHHHhhcceEEeccCCCcccCCCcCCceEE
Confidence 35799999999999988765544 446677888877532 223333444321 0 012259
Q ss_pred EEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCccc-------CCcEEEEEEcCCCC-----CCChhhhccCcc
Q 043051 402 IFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVS-------TSQVLVIGATNRLD-----ILDPALLRKGRF 469 (845)
Q Consensus 402 LfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~-------~~~ViVIaaTN~pd-----~LDpALlRpgRF 469 (845)
+||||++.-... ..+.......|.++++. .|+... -.++.+|||.|+|. .|+++++| ||
T Consensus 1378 lFiDDiNmp~~D------~yGtQ~~ielLrqlld~-~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F 1448 (3245)
T 3vkg_A 1378 VFCDEINLPSTD------KYGTQRVITFIRQMVEK-GGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HA 1448 (3245)
T ss_dssp EEETTTTCCCCC------TTSCCHHHHHHHHHHHH-SEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TC
T ss_pred EEecccCCCCcc------ccccccHHHHHHHHHHc-CCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hc
Confidence 999999864211 12233455667777765 222221 13588999999884 58999999 88
Q ss_pred cEEEEeCCCCHhHHHHHHHHHHhh
Q 043051 470 DKIVRVGLPSKDGRFAILKVHARN 493 (845)
Q Consensus 470 dr~I~v~~Pd~eeR~eIL~~~l~~ 493 (845)
. .+.++.|+.+....|+...+..
T Consensus 1449 ~-vi~i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1449 P-ILLVDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp C-EEECCCCCHHHHHHHHHHHHHH
T ss_pred e-EEEeCCCCHHHHHHHHHHHHHH
Confidence 6 6999999999999998776653
No 107
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.32 E-value=5.9e-07 Score=116.96 Aligned_cols=119 Identities=23% Similarity=0.242 Sum_probs=76.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHH----Hhhhh------------hhhhhHHHHHHHHH
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFV----EMFVG------------VAASRVKDLFASAR 395 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~----~~~vG------------~~~~~vr~lF~~A~ 395 (845)
|+..+++++|+||||||||+||.+++.++ |.....++..+.. ....| .++..++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 36678899999999999999999997765 4455555544221 22222 22355666777778
Q ss_pred hcCCcEEEEcccchhccCCCC-CCCCCCch-HHHHHHHHHHHhhcCCcccCCcEEEEEEcCC
Q 043051 396 SFAPSIIFIDEIDAIGSKRGG-PDIGGGGA-EREQGLLQILTEMDGFKVSTSQVLVIGATNR 455 (845)
Q Consensus 396 ~~aP~ILfIDEIDaL~~~R~~-~~~~~~~~-e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~ 455 (845)
..+|++|||||++++.+.+.. .+.+..+. .....+.++|.++.++....+ ++||+ ||.
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~-v~VI~-tNq 1562 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN-TLLIF-INQ 1562 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTT-CEEEE-EEC
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCC-cEEEE-Ecc
Confidence 889999999999988764210 01111111 134556777777777665555 55554 443
No 108
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.15 E-value=2e-06 Score=88.10 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=25.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeE
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFF 368 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi 368 (845)
.+++|||||||||||++|.++|+.++..++
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 368999999999999999999999865443
No 109
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.96 E-value=3.2e-05 Score=104.69 Aligned_cols=125 Identities=17% Similarity=0.197 Sum_probs=90.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhhhhhhhhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCC
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDI 419 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~ 419 (845)
.|..+.||+|||||.+++.+|+.+|.+++.++|++-.+ ...+..+|..+.. ..+..++|||+.+
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~-~GaW~cfDEfNrl--------- 668 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQ-CGAWGCFDEFNRL--------- 668 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHH-HTCEEEEETTTSS---------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhh-cCcEEEehhhhcC---------
Confidence 47789999999999999999999999999999986432 2234455665554 4578999999998
Q ss_pred CCCchHHHHHHHHHHHh-------------hc-C--CcccCCcEEEEEEcCC----CCCCChhhhccCcccEEEEeCCCC
Q 043051 420 GGGGAEREQGLLQILTE-------------MD-G--FKVSTSQVLVIGATNR----LDILDPALLRKGRFDKIVRVGLPS 479 (845)
Q Consensus 420 ~~~~~e~~~~L~qLL~e-------------md-g--~~~~~~~ViVIaaTN~----pd~LDpALlRpgRFdr~I~v~~Pd 479 (845)
..+....+.+.+.. +. | +...+ ...|++|.|+ ...|+++|.. || +.|.+..||
T Consensus 669 ---~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~-~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd 741 (3245)
T 3vkg_A 669 ---EERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQ-DMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPD 741 (3245)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCT-TCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCC
T ss_pred ---CHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecC-CeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCC
Confidence 34455555554432 11 2 11122 3667778784 3468999998 88 469999999
Q ss_pred HhHHHHHH
Q 043051 480 KDGRFAIL 487 (845)
Q Consensus 480 ~eeR~eIL 487 (845)
.+...+|+
T Consensus 742 ~~~i~ei~ 749 (3245)
T 3vkg_A 742 REMIAQVM 749 (3245)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98888875
No 110
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.93 E-value=2.5e-05 Score=77.86 Aligned_cols=28 Identities=36% Similarity=0.604 Sum_probs=24.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeE
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFF 368 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi 368 (845)
.+.|.||+|+|||||++.+++.+++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 4789999999999999999998875543
No 111
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.92 E-value=1.2e-05 Score=85.46 Aligned_cols=27 Identities=41% Similarity=0.527 Sum_probs=24.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGV 365 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~ 365 (845)
.++++||||||||||++|++||+..+.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 358999999999999999999997654
No 112
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.79 E-value=4.5e-05 Score=76.69 Aligned_cols=40 Identities=23% Similarity=0.133 Sum_probs=32.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechh
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTD 374 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sd 374 (845)
|+....-++|+||||+|||+|++.+|...+.+.++++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4455567899999999999999999986677777777643
No 113
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.75 E-value=7.7e-05 Score=84.92 Aligned_cols=104 Identities=24% Similarity=0.337 Sum_probs=59.1
Q ss_pred cccccCCCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CC-CeEEe
Q 043051 295 ISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GV-PFFAA 370 (845)
Q Consensus 295 ~~~~~~~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~-pfi~v 370 (845)
.+.+++++.+|+++- ++.++.+..++.++.... ..++|.||||||||+++.+++..+ +. .++.+
T Consensus 13 ~~~~~~~p~~~~~Ln--~~Q~~av~~~~~~i~~~~----------~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~ 80 (459)
T 3upu_A 13 GLVPRGSHMTFDDLT--EGQKNAFNIVMKAIKEKK----------HHVTINGPAGTGATTLTKFIIEALISTGETGIILA 80 (459)
T ss_dssp --------CCSSCCC--HHHHHHHHHHHHHHHSSS----------CEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCccccCCCccccCC--HHHHHHHHHHHHHHhcCC----------CEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence 345568899999984 344555556666655422 279999999999999999998766 33 44444
Q ss_pred echhH----HHhhhhhhhhhHHHHHHHHH----------------hcCCcEEEEcccchh
Q 043051 371 NGTDF----VEMFVGVAASRVKDLFASAR----------------SFAPSIIFIDEIDAI 410 (845)
Q Consensus 371 s~sdf----~~~~vG~~~~~vr~lF~~A~----------------~~aP~ILfIDEIDaL 410 (845)
..+.- +....|.....+..++.... .....+|+|||+..+
T Consensus 81 a~T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~ 140 (459)
T 3upu_A 81 APTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMY 140 (459)
T ss_dssp ESSHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGC
T ss_pred cCcHHHHHHHHhhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhC
Confidence 43321 11122333444444443110 012469999999887
No 114
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.71 E-value=0.00015 Score=73.13 Aligned_cols=38 Identities=32% Similarity=0.439 Sum_probs=28.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeec
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANG 372 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~ 372 (845)
|+.....++|+||||+|||+|++.++..+ +.+++.++.
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 34445678999999999999999998654 556665553
No 115
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.68 E-value=0.0011 Score=76.96 Aligned_cols=175 Identities=15% Similarity=0.111 Sum_probs=95.6
Q ss_pred CCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----C--CCeEEeech
Q 043051 301 TGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA-----G--VPFFAANGT 373 (845)
Q Consensus 301 ~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el-----g--~pfi~vs~s 373 (845)
.+.....++|.+...+.|.+.+... ...++-++|+||+|+|||+||+.++... . ...+.++.+
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~ 188 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKL----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVG 188 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTS----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEE
T ss_pred CCCCCCeecccHHHHHHHHHHHhcc----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECC
Confidence 3455678999998777776654321 1124679999999999999999996432 1 123333332
Q ss_pred h-----HHHhhh------hh----------hhhhHHHHHHHH-H-hcCCcEEEEcccchhccCCCCCCCCCCchHHHHHH
Q 043051 374 D-----FVEMFV------GV----------AASRVKDLFASA-R-SFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGL 430 (845)
Q Consensus 374 d-----f~~~~v------G~----------~~~~vr~lF~~A-~-~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L 430 (845)
. +...+. +. ....+...+... . ...|.+|+||+++..
T Consensus 189 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-------------------- 248 (591)
T 1z6t_A 189 KQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-------------------- 248 (591)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--------------------
T ss_pred CCchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--------------------
Confidence 1 111111 10 001122222222 1 225899999999753
Q ss_pred HHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEe---CCCCHhHHHHHHHHHHhhhcccchhhhhhHHH
Q 043051 431 LQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRV---GLPSKDGRFAILKVHARNKYFRSEEEKDVLLQ 507 (845)
Q Consensus 431 ~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v---~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~ 507 (845)
..+..+ ..+ ..||.||........ .. + ..+.+ +..+.++-.++|...+...... ......
T Consensus 249 -~~l~~l-----~~~-~~ilvTsR~~~~~~~--~~-~---~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~----~~~~~~ 311 (591)
T 1z6t_A 249 -WVLKAF-----DSQ-CQILLTTRDKSVTDS--VM-G---PKYVVPVESSLGKEKGLEILSLFVNMKKAD----LPEQAH 311 (591)
T ss_dssp -HHHHTT-----CSS-CEEEEEESCGGGGTT--CC-S---CEEEEECCSSCCHHHHHHHHHHHHTSCGGG----SCTHHH
T ss_pred -HHHHHh-----cCC-CeEEEECCCcHHHHh--cC-C---CceEeecCCCCCHHHHHHHHHHHhCCCccc----ccHHHH
Confidence 012222 123 566667765442211 11 2 23344 4678888889998776431111 234578
Q ss_pred HHHHHccCCcHHHHHH
Q 043051 508 EIAELTEDFTGAELQN 523 (845)
Q Consensus 508 ~LA~~t~GfSgaDL~~ 523 (845)
.|++.+.|+ +--|..
T Consensus 312 ~i~~~~~G~-PLal~~ 326 (591)
T 1z6t_A 312 SIIKECKGS-PLVVSL 326 (591)
T ss_dssp HHHHHHTTC-HHHHHH
T ss_pred HHHHHhCCC-cHHHHH
Confidence 899999985 443433
No 116
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.60 E-value=0.00021 Score=73.22 Aligned_cols=37 Identities=35% Similarity=0.345 Sum_probs=27.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHH--Hh--cCCCeEEeec
Q 043051 336 IYCPKGVLLHGPPGTGKTLLAKAIA--GE--AGVPFFAANG 372 (845)
Q Consensus 336 ~~~PrgVLL~GPPGTGKT~LArALA--~e--lg~pfi~vs~ 372 (845)
+....-+.|.||+|+|||+|++.++ .. .+...+.+++
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 3445679999999999999999998 33 3445555543
No 117
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.60 E-value=4.9e-05 Score=74.18 Aligned_cols=39 Identities=18% Similarity=0.393 Sum_probs=34.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE 377 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~ 377 (845)
|+-++|+|+||+|||++|++|+..++.+|+.++..++..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~ 41 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIE 41 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhh
Confidence 467999999999999999999999999999888766654
No 118
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.58 E-value=0.00017 Score=73.62 Aligned_cols=78 Identities=15% Similarity=0.127 Sum_probs=49.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCeEEeechh------HHHh--hhhhh--------------
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---------GVPFFAANGTD------FVEM--FVGVA-------------- 383 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---------g~pfi~vs~sd------f~~~--~vG~~-------------- 383 (845)
|+....-++|+||||+|||+|++.+|... +...+++++.+ +... ..|..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 34455678999999999999999999852 44567776544 1111 01110
Q ss_pred -hh----hHHHHHHHHHhcCCcEEEEcccchhcc
Q 043051 384 -AS----RVKDLFASARSFAPSIIFIDEIDAIGS 412 (845)
Q Consensus 384 -~~----~vr~lF~~A~~~aP~ILfIDEIDaL~~ 412 (845)
.. .+..+.+......|.+|+|||+..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 01 122233344456789999999998854
No 119
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.52 E-value=0.0015 Score=67.82 Aligned_cols=121 Identities=24% Similarity=0.357 Sum_probs=70.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeech--------hHHHhh----------hhh--hhhhHHHHHHHHHh
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGT--------DFVEMF----------VGV--AASRVKDLFASARS 396 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~s--------df~~~~----------vG~--~~~~vr~lF~~A~~ 396 (845)
..+++.|+||||||++|-.+|..+ |..+..+... .+.... .|. .+..+..++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~---- 82 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK---- 82 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH----
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh----
Confidence 469999999999999999998765 6666555442 111110 000 1123333332
Q ss_pred cCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCC------------------CC
Q 043051 397 FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRL------------------DI 458 (845)
Q Consensus 397 ~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~p------------------d~ 458 (845)
..|.+|+|||+-.... .+..+....+.+..++.. + +=|++|+|.- +.
T Consensus 83 ~~pdlvIVDElG~~~~------~~~r~~~~~qDV~~~l~s--------g-idVitT~Nlqh~esl~d~v~~itg~~v~e~ 147 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNA------PGSRHTKRWQDIQELLAA--------G-IDVYTTVNVQHLESLNDQVRGITGVQVRET 147 (228)
T ss_dssp HCCSEEEESCTTCBCC------TTCSSSBHHHHHHHHHHT--------T-CEEEEEEEGGGBGGGHHHHHHHHSCCCCSC
T ss_pred cCCCEEEEeCCCCCCc------ccchhHHHHHHHHHHHcC--------C-CCEEEEccccccccHHHHHHHHcCCCcCCc
Confidence 3689999999876411 112233344444443322 2 5567777621 33
Q ss_pred CChhhhccCcccEEEEeCCCCHh
Q 043051 459 LDPALLRKGRFDKIVRVGLPSKD 481 (845)
Q Consensus 459 LDpALlRpgRFdr~I~v~~Pd~e 481 (845)
++..++. +-|.+.-++.|..+
T Consensus 148 vpd~~~~--~a~~v~lvD~~p~~ 168 (228)
T 2r8r_A 148 LPDWVLQ--EAFDLVLIDLPPRE 168 (228)
T ss_dssp BCHHHHH--TCSEEEEBCCCHHH
T ss_pred CccHHHh--hCCeEEEecCCHHH
Confidence 5666766 66777778887765
No 120
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.50 E-value=0.00024 Score=78.84 Aligned_cols=78 Identities=26% Similarity=0.329 Sum_probs=50.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHH----hhhhhh-----------hhhHHHHHHHH-H
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVE----MFVGVA-----------ASRVKDLFASA-R 395 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~----~~vG~~-----------~~~vr~lF~~A-~ 395 (845)
|.+....++|+||||+|||+||..+|..+ +.++++++...-.. ...|.. ...+...+... +
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 44556679999999999999999997654 66777777543111 111211 11222223222 3
Q ss_pred hcCCcEEEEcccchhcc
Q 043051 396 SFAPSIIFIDEIDAIGS 412 (845)
Q Consensus 396 ~~aP~ILfIDEIDaL~~ 412 (845)
...+++|+||.+..+..
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 45689999999999964
No 121
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.47 E-value=0.00012 Score=80.83 Aligned_cols=78 Identities=24% Similarity=0.255 Sum_probs=49.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHH----Hhhhhhhh--------hhHHHHHHH----HH
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFV----EMFVGVAA--------SRVKDLFAS----AR 395 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~----~~~vG~~~--------~~vr~lF~~----A~ 395 (845)
|.....-++|+||||+|||+||..++..+ +.+.++++...-. ....|... ..+..+++. ++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 44445669999999999999999997654 5667766654311 11122111 112233332 23
Q ss_pred hcCCcEEEEcccchhcc
Q 043051 396 SFAPSIIFIDEIDAIGS 412 (845)
Q Consensus 396 ~~aP~ILfIDEIDaL~~ 412 (845)
...|.+|+||++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 45699999999999863
No 122
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.45 E-value=0.00021 Score=77.59 Aligned_cols=78 Identities=21% Similarity=0.198 Sum_probs=50.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCeEEeechhH--HH----h--hhhhh--------------
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---------GVPFFAANGTDF--VE----M--FVGVA-------------- 383 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---------g~pfi~vs~sdf--~~----~--~vG~~-------------- 383 (845)
|.+...-++|+||||+|||+||..+|..+ +.+.++++...- .+ . -.|..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 44555679999999999999999998875 456777765431 11 1 01110
Q ss_pred -hh----hHHHHHHHHHh-cCCcEEEEcccchhcc
Q 043051 384 -AS----RVKDLFASARS-FAPSIIFIDEIDAIGS 412 (845)
Q Consensus 384 -~~----~vr~lF~~A~~-~aP~ILfIDEIDaL~~ 412 (845)
.. .+..+....+. ..+.+|+||.+..+..
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 01 12223333344 5789999999999864
No 123
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.45 E-value=9e-05 Score=74.16 Aligned_cols=70 Identities=19% Similarity=0.194 Sum_probs=39.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh---cCCCeEEeech-h--H----HHhhhhh-----hhhhHHHHHHHHHhcCCcEEEE
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGE---AGVPFFAANGT-D--F----VEMFVGV-----AASRVKDLFASARSFAPSIIFI 404 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~e---lg~pfi~vs~s-d--f----~~~~vG~-----~~~~vr~lF~~A~~~aP~ILfI 404 (845)
+-++++||||+|||+++..++.. .|.+++.+... + + +....|. ......++++.+. ..+.+|+|
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvviI 82 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGVFI 82 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCC-TTEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhc-CCCCEEEE
Confidence 45789999999999999666654 35555544322 0 0 0000110 0112233343332 23579999
Q ss_pred cccchh
Q 043051 405 DEIDAI 410 (845)
Q Consensus 405 DEIDaL 410 (845)
||++.+
T Consensus 83 DE~Q~~ 88 (184)
T 2orw_A 83 DEVQFF 88 (184)
T ss_dssp CCGGGS
T ss_pred ECcccC
Confidence 999987
No 124
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.39 E-value=0.00016 Score=94.65 Aligned_cols=118 Identities=19% Similarity=0.244 Sum_probs=73.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHhh----hhh--------hhhhHHHHHHHHHh---
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEMF----VGV--------AASRVKDLFASARS--- 396 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~~----vG~--------~~~~vr~lF~~A~~--- 396 (845)
|+.+...++|+|+||+|||+||..+|..+ +.+++++++.+-.+.. .|. .+..+..+++.++.
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 46677889999999999999999998876 4578998876533322 231 12235556665544
Q ss_pred -cCCcEEEEcccchhcc-CCCCCCCCCCc-hHHHHHHHHHHHhhcCCcccCCcEEEEEEc
Q 043051 397 -FAPSIIFIDEIDAIGS-KRGGPDIGGGG-AEREQGLLQILTEMDGFKVSTSQVLVIGAT 453 (845)
Q Consensus 397 -~aP~ILfIDEIDaL~~-~R~~~~~~~~~-~e~~~~L~qLL~emdg~~~~~~~ViVIaaT 453 (845)
..|++|+||.|+.+.. .+.....+..+ ......+.+++..+..+....+ +.||+..
T Consensus 808 ~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~-v~VI~l~ 866 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN-TLLIFIN 866 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTT-CEEEEEE
T ss_pred ccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhC-CEEEEec
Confidence 6799999999999965 21000001111 1112336666666665544444 6666655
No 125
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.38 E-value=0.00029 Score=77.94 Aligned_cols=78 Identities=23% Similarity=0.230 Sum_probs=50.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHH----hhhhhh--------hhhHHHHHHHH----H
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVE----MFVGVA--------ASRVKDLFASA----R 395 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~----~~vG~~--------~~~vr~lF~~A----~ 395 (845)
|+....-++|+||||+|||+|+..+|..+ +.+++++++.+... .-.|.. ...+.+++..+ +
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 34445668999999999999999998764 66777777643211 111111 11222333332 3
Q ss_pred hcCCcEEEEcccchhcc
Q 043051 396 SFAPSIIFIDEIDAIGS 412 (845)
Q Consensus 396 ~~aP~ILfIDEIDaL~~ 412 (845)
...|.+++||.+..+..
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 46789999999998864
No 126
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.37 E-value=0.00067 Score=72.56 Aligned_cols=60 Identities=28% Similarity=0.430 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhH
Q 043051 312 EYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDF 375 (845)
Q Consensus 312 de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf 375 (845)
++..+.+.+++..+... ......|.-++|.||||+||||+|+.++.+++..++.+++..+
T Consensus 10 ~~~~~~~~~~~~~~l~~----~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQG----KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp HHHHHHHHHHHHHHHTT----CCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred HHHHHHHHHHHHHHhcc----ccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 45555555555553321 1233457889999999999999999999988656677777554
No 127
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.33 E-value=0.00012 Score=72.06 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=29.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAA 370 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi~v 370 (845)
++.++|+||||||||++|+.+|..+|.+|+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 56799999999999999999999999998854
No 128
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.33 E-value=0.00048 Score=71.91 Aligned_cols=60 Identities=27% Similarity=0.360 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhH
Q 043051 312 EYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDF 375 (845)
Q Consensus 312 de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf 375 (845)
++.+..+.+++..+.... .....|..++|.||||+|||++|+.+++.++.+++.+++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 9 SEFKHALARNLRSLTRGK----KSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp HHHHHHHHHHHHHHHTTC----CCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred HHHHHHHHHHHHHHHccC----CcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 344444555554433221 134457889999999999999999999999877777787765
No 129
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.33 E-value=0.0024 Score=79.92 Aligned_cols=172 Identities=15% Similarity=0.143 Sum_probs=97.3
Q ss_pred CCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---C--CC--eEEeech
Q 043051 301 TGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---G--VP--FFAANGT 373 (845)
Q Consensus 301 ~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g--~p--fi~vs~s 373 (845)
.+.....++|.++..++|.+.+.... ..++-+.|+|+.|+|||+||+.++... . .+ ++.++.+
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~----------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~ 188 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLN----------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIG 188 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTT----------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECC
T ss_pred CCCCCceeccHHHHHHHHHHHHhhcc----------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEEC
Confidence 44556679999987777766553111 124668899999999999999997652 1 22 2333322
Q ss_pred h-----HHHhh------hh----------hhhhhHHHHHHHHHh--cCCcEEEEcccchhccCCCCCCCCCCchHHHHHH
Q 043051 374 D-----FVEMF------VG----------VAASRVKDLFASARS--FAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGL 430 (845)
Q Consensus 374 d-----f~~~~------vG----------~~~~~vr~lF~~A~~--~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L 430 (845)
. ....+ .+ .....+...+..... ..+.+|+||+++...
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~------------------- 249 (1249)
T 3sfz_A 189 KQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW------------------- 249 (1249)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH-------------------
T ss_pred CcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH-------------------
Confidence 2 11100 00 011222233332222 237899999987540
Q ss_pred HHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCC-CCHhHHHHHHHHHHhhhcccchhhhhhHHHHH
Q 043051 431 LQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGL-PSKDGRFAILKVHARNKYFRSEEEKDVLLQEI 509 (845)
Q Consensus 431 ~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~-Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~L 509 (845)
.+. .+ .++ ..||.||..+..... .. .-...+.++. .+.++-.++|..++...... .......|
T Consensus 250 --~~~---~~--~~~-~~ilvTtR~~~~~~~-~~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~----~~~~~~~i 313 (1249)
T 3sfz_A 250 --VLK---AF--DNQ-CQILLTTRDKSVTDS-VM---GPKHVVPVESGLGREKGLEILSLFVNMKKED----LPAEAHSI 313 (1249)
T ss_dssp --HHT---TT--CSS-CEEEEEESSTTTTTT-CC---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTT----CCTHHHHH
T ss_pred --HHH---hh--cCC-CEEEEEcCCHHHHHh-hc---CCceEEEecCCCCHHHHHHHHHHhhCCChhh----CcHHHHHH
Confidence 111 12 123 467777765543321 11 1234677875 88888889998776432211 23457789
Q ss_pred HHHccCCc
Q 043051 510 AELTEDFT 517 (845)
Q Consensus 510 A~~t~GfS 517 (845)
++.+.|..
T Consensus 314 ~~~~~glP 321 (1249)
T 3sfz_A 314 IKECKGSP 321 (1249)
T ss_dssp HHHTTTCH
T ss_pred HHHhCCCH
Confidence 99998853
No 130
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.26 E-value=0.00017 Score=71.01 Aligned_cols=34 Identities=32% Similarity=0.610 Sum_probs=30.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 043051 336 IYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFA 369 (845)
Q Consensus 336 ~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~ 369 (845)
...|+-++|.|+||+||||+++.++..++.+++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 3457789999999999999999999999988765
No 131
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.26 E-value=0.00047 Score=76.23 Aligned_cols=78 Identities=23% Similarity=0.327 Sum_probs=50.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechh----HHHhhhhh-----------hhhhHHHHHHHH-H
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTD----FVEMFVGV-----------AASRVKDLFASA-R 395 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sd----f~~~~vG~-----------~~~~vr~lF~~A-~ 395 (845)
|.+....++|+||||+|||+||..+|.++ |.++++++... ......|. ....+..++... +
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 45556679999999999999999998754 66788887632 11111121 112233333322 3
Q ss_pred hcCCcEEEEcccchhcc
Q 043051 396 SFAPSIIFIDEIDAIGS 412 (845)
Q Consensus 396 ~~aP~ILfIDEIDaL~~ 412 (845)
...+.+|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 45789999999999864
No 132
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.26 E-value=0.00048 Score=75.54 Aligned_cols=40 Identities=25% Similarity=0.206 Sum_probs=30.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCeEEeechh
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---------GVPFFAANGTD 374 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---------g~pfi~vs~sd 374 (845)
|.+...-++|+||||+|||+||..+|..+ +.+.++++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 44445568999999999999999998863 45667776543
No 133
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.24 E-value=0.00017 Score=72.29 Aligned_cols=38 Identities=37% Similarity=0.531 Sum_probs=31.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE 377 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~ 377 (845)
.++.++|.||||||||+++++||+.++.+++.. .++..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~--d~~~~ 61 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL--DWYIE 61 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH--HHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc--hHHHH
Confidence 456799999999999999999999999998744 34443
No 134
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.22 E-value=0.00045 Score=69.70 Aligned_cols=29 Identities=34% Similarity=0.345 Sum_probs=24.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el 363 (845)
|+....-+.|+||+|+|||+|++.+++..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44445568999999999999999999854
No 135
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.22 E-value=0.0015 Score=66.48 Aligned_cols=39 Identities=36% Similarity=0.445 Sum_probs=29.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeech
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGT 373 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~s 373 (845)
|.....-++|+||||+|||+|+..+|... +.+.++++..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 44455678999999999999998886543 6677776653
No 136
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.22 E-value=0.00098 Score=68.97 Aligned_cols=71 Identities=17% Similarity=0.124 Sum_probs=44.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechh---H---HHhhhhhh-----hhhHHHHHHHHHh----cCCcE
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTD---F---VEMFVGVA-----ASRVKDLFASARS----FAPSI 401 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sd---f---~~~~vG~~-----~~~vr~lF~~A~~----~aP~I 401 (845)
.-++++||||+|||+++..++..+ |..++.++... . +....|.. .....++++.++. ..+.+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 357789999999999999887665 66666664321 0 00001111 1123456666654 24789
Q ss_pred EEEcccchh
Q 043051 402 IFIDEIDAI 410 (845)
Q Consensus 402 LfIDEIDaL 410 (845)
|+|||+..+
T Consensus 93 ViIDEaQ~l 101 (223)
T 2b8t_A 93 IGIDEVQFF 101 (223)
T ss_dssp EEECSGGGS
T ss_pred EEEecCccC
Confidence 999999887
No 137
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.17 E-value=0.0062 Score=70.68 Aligned_cols=167 Identities=14% Similarity=0.176 Sum_probs=92.1
Q ss_pred cccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHH----hcCCC-----eEEeech---hHH
Q 043051 309 AGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAG----EAGVP-----FFAANGT---DFV 376 (845)
Q Consensus 309 vG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~----elg~p-----fi~vs~s---df~ 376 (845)
+|.+..+++|.+.+..-. ...++.|.|+|++|+|||+||+.+++ ..... ++.++.. +..
T Consensus 131 ~GR~~~~~~l~~~L~~~~---------~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---------DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---------TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhccc---------CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 499988877776653211 12246789999999999999999997 33222 3333332 111
Q ss_pred H---hh---hhhh-------------hhhHHHHHHHHHhcC-CcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHh
Q 043051 377 E---MF---VGVA-------------ASRVKDLFASARSFA-PSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTE 436 (845)
Q Consensus 377 ~---~~---vG~~-------------~~~vr~lF~~A~~~a-P~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~e 436 (845)
. .. .+.. ...+...+....... +++|+||+++... + + .+..
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~----------------~-~--~~~~ 262 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE----------------T-I--RWAQ 262 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH----------------H-H--HHHH
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch----------------h-h--cccc
Confidence 1 11 1111 011233333333343 7899999987751 1 1 1111
Q ss_pred hcCCcccCCcEEEEEEcCCCCCCChhhhccCcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHccCC
Q 043051 437 MDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELTEDF 516 (845)
Q Consensus 437 mdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t~Gf 516 (845)
. .+ ..||.||....... .-+..+..+.++..+.++-.++|..++..... ..........|++.+.|.
T Consensus 263 ~------~g-s~ilvTTR~~~v~~----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~--~~~~~~~~~~I~~~c~Gl 329 (549)
T 2a5y_B 263 E------LR-LRCLVTTRDVEISN----AASQTCEFIEVTSLEIDECYDFLEAYGMPMPV--GEKEEDVLNKTIELSSGN 329 (549)
T ss_dssp H------TT-CEEEEEESBGGGGG----GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTC
T ss_pred c------CC-CEEEEEcCCHHHHH----HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHHhCCC
Confidence 1 23 45666776433211 11113357899999999999999877432211 111233466778888774
No 138
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.15 E-value=0.0056 Score=69.53 Aligned_cols=147 Identities=23% Similarity=0.199 Sum_probs=86.5
Q ss_pred cEEEEcccchhccCCCCCCCCCCchH---HHHHHHHHHHhhcC----CcccCCcEEEEEEc----CCCCCCChhhhccCc
Q 043051 400 SIIFIDEIDAIGSKRGGPDIGGGGAE---REQGLLQILTEMDG----FKVSTSQVLVIGAT----NRLDILDPALLRKGR 468 (845)
Q Consensus 400 ~ILfIDEIDaL~~~R~~~~~~~~~~e---~~~~L~qLL~emdg----~~~~~~~ViVIaaT----N~pd~LDpALlRpgR 468 (845)
+|||+||||.++++.++ . +++.. .++.|+++++--.. ...+..+|++|||. +.|..+-|.|+. |
T Consensus 252 ~il~~DEidki~~~~~~--~-~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~--R 326 (444)
T 1g41_A 252 GIVFIDEIDKICKKGEY--S-GADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--R 326 (444)
T ss_dssp CEEEEETGGGGSCCSSC--S-SSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHT--T
T ss_pred CeeeHHHHHHHhhccCC--C-CCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhc--c
Confidence 59999999999865331 1 22211 34566666543100 01234568999997 234445588887 9
Q ss_pred ccEEEEeCCCCHhHHHHHHH---HHH-----hh---hcccchhhhhhHHHHHHHH-------ccCCcHHHHHHHHHHHHH
Q 043051 469 FDKIVRVGLPSKDGRFAILK---VHA-----RN---KYFRSEEEKDVLLQEIAEL-------TEDFTGAELQNILNEAGI 530 (845)
Q Consensus 469 Fdr~I~v~~Pd~eeR~eIL~---~~l-----~~---~~l~~~~~~d~dl~~LA~~-------t~GfSgaDL~~LvneAal 530 (845)
|..+|.++.++.++..+|+. .++ .. .+... ...+..+..|++. |.....+.|.+++..+..
T Consensus 327 ~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l-~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~ 405 (444)
T 1g41_A 327 LPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNI-AFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMD 405 (444)
T ss_dssp CCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEE-EECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHH
T ss_pred cceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceE-EECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHH
Confidence 99999999999999999993 111 11 11111 1234556666653 455556666665554443
Q ss_pred H----HHHcCCC--ccCHHHHHHHHHhc
Q 043051 531 L----TARKDLD--YIGQEELLEALKRQ 552 (845)
Q Consensus 531 ~----A~r~~~~--~It~edl~~Al~r~ 552 (845)
. +...... .||.+.+.+.+...
T Consensus 406 ~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 433 (444)
T 1g41_A 406 KISFSASDMNGQTVNIDAAYVADALGEV 433 (444)
T ss_dssp HHHHHGGGCTTCEEEECHHHHHHHHTTT
T ss_pred HHHhhccccCCCeEEEeHHHHHHhcCcc
Confidence 3 3222112 47888888877654
No 139
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.15 E-value=0.00033 Score=90.63 Aligned_cols=78 Identities=22% Similarity=0.277 Sum_probs=55.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHH----Hhhhhh--------hhhhHHHHHHHHH----
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFV----EMFVGV--------AASRVKDLFASAR---- 395 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~----~~~vG~--------~~~~vr~lF~~A~---- 395 (845)
|..++..++|+||||+|||+||..+|.++ +.++.++++.+-. ....|. ....+..+++.++
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 46677889999999999999999998765 5578887765332 222221 1223445555553
Q ss_pred hcCCcEEEEcccchhcc
Q 043051 396 SFAPSIIFIDEIDAIGS 412 (845)
Q Consensus 396 ~~aP~ILfIDEIDaL~~ 412 (845)
...|++|+||.+..+..
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 46899999999999863
No 140
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.11 E-value=0.00086 Score=75.26 Aligned_cols=78 Identities=17% Similarity=0.092 Sum_probs=47.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCeEEeechhH-H-------Hhhhhhh--------------
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---------GVPFFAANGTDF-V-------EMFVGVA-------------- 383 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---------g~pfi~vs~sdf-~-------~~~vG~~-------------- 383 (845)
|+....-++|+||||||||+|++.+|-.. +...+++++.+- . ...+|..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 45555679999999999999999776433 234667765431 0 0011110
Q ss_pred -----hhhHHHHHHHHHhcCCcEEEEcccchhcc
Q 043051 384 -----ASRVKDLFASARSFAPSIIFIDEIDAIGS 412 (845)
Q Consensus 384 -----~~~vr~lF~~A~~~aP~ILfIDEIDaL~~ 412 (845)
...+..+........|.+|+||++-.+..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence 01112222333445789999999998864
No 141
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.11 E-value=0.00034 Score=68.95 Aligned_cols=40 Identities=35% Similarity=0.511 Sum_probs=33.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhH
Q 043051 336 IYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDF 375 (845)
Q Consensus 336 ~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf 375 (845)
+..+.-+.|.||||+||||+++.|++..+.+.+.+++.++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 3445678999999999999999999988878888887665
No 142
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.09 E-value=0.0038 Score=70.82 Aligned_cols=175 Identities=14% Similarity=0.051 Sum_probs=90.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHH-------h---hhh----------hhhhhHHHHHHHH
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVE-------M---FVG----------VAASRVKDLFASA 394 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~-------~---~vG----------~~~~~vr~lF~~A 394 (845)
.|.-++++|++|+||||++..+|..+ |..+..+++..+.. . ..| .....+++.+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 47889999999999999999998755 66666666543211 0 001 1122345667777
Q ss_pred HhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCC--hhhhccCcccEE
Q 043051 395 RSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILD--PALLRKGRFDKI 472 (845)
Q Consensus 395 ~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LD--pALlRpgRFdr~ 472 (845)
+.....+|+||....+ .........+..+..... ...-++|+-++...+.++ .++.....++ .
T Consensus 179 ~~~~~DvVIIDTaGrl----------~~d~~lm~el~~i~~~~~----pd~vlLVvDA~~gq~a~~~a~~f~~~~~i~-g 243 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH----------KEDKALIEEMKQISNVIH----PHEVILVIDGTIGQQAYNQALAFKEATPIG-S 243 (443)
T ss_dssp HHTTCSEEEEECCCCS----------SCCHHHHHHHHHHHHHHC----CSEEEEEEEGGGGGGHHHHHHHHHHSCTTE-E
T ss_pred HhCCCCEEEEECCCcc----------cchHHHHHHHHHHHHhhc----CceEEEEEeCCCchhHHHHHHHHHhhCCCe-E
Confidence 7766789999976433 112333344444443331 222244444443222211 1111111222 3
Q ss_pred EEeCCCCHhHHHHHHHHHHhhhccc---------chhhhhhHHHHHHHHccCCcHHHHHHHHHHHH
Q 043051 473 VRVGLPSKDGRFAILKVHARNKYFR---------SEEEKDVLLQEIAELTEDFTGAELQNILNEAG 529 (845)
Q Consensus 473 I~v~~Pd~eeR~eIL~~~l~~~~l~---------~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAa 529 (845)
+-+...|...+...+.......+.. .++....+.+.++...-|+ .|+..++..|.
T Consensus 244 VIlTKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~llg~--gd~~~l~e~~~ 307 (443)
T 3dm5_A 244 IIVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLGL--GDIQGLLEKFK 307 (443)
T ss_dssp EEEECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTTT--TCHHHHHHHHH
T ss_pred EEEECCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHcCC--CcHHHHHHHHH
Confidence 4556666555544333222222211 1122234566777766552 37777776653
No 143
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.05 E-value=0.00031 Score=68.97 Aligned_cols=30 Identities=30% Similarity=0.585 Sum_probs=27.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAGVPFFA 369 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg~pfi~ 369 (845)
..|+|+|+||+|||++|+.||..+|.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 358999999999999999999999999874
No 144
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.02 E-value=0.0004 Score=66.85 Aligned_cols=31 Identities=23% Similarity=0.347 Sum_probs=27.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAAN 371 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~vs 371 (845)
-|+|.||||+||||+++.|++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4889999999999999999999998887554
No 145
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.02 E-value=0.00084 Score=72.46 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=23.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~e 362 (845)
|.+...-++|+||||+|||+||..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4445567899999999999999999875
No 146
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.01 E-value=0.00037 Score=68.30 Aligned_cols=33 Identities=36% Similarity=0.687 Sum_probs=29.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAA 370 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~elg~pfi~v 370 (845)
.++.|+|+|+||+|||+++++++..++.+++..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 356799999999999999999999999887743
No 147
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.01 E-value=0.0011 Score=69.39 Aligned_cols=39 Identities=23% Similarity=0.335 Sum_probs=32.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh---cCCCeEEeechhHHH
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGE---AGVPFFAANGTDFVE 377 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~e---lg~pfi~vs~sdf~~ 377 (845)
+.-|+|.|+||+|||++|+.++.. .|.+++.++...+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~ 45 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRE 45 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHH
Confidence 456999999999999999999997 788888777666554
No 148
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.00 E-value=0.0013 Score=72.22 Aligned_cols=39 Identities=26% Similarity=0.204 Sum_probs=30.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcC---------CCeEEeech
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEAG---------VPFFAANGT 373 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~elg---------~pfi~vs~s 373 (845)
|++...-+.|+||||+|||+|++.++.... ...+++++.
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e 174 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 174 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCC
Confidence 455566789999999999999999998762 344666653
No 149
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.98 E-value=0.00034 Score=68.33 Aligned_cols=29 Identities=31% Similarity=0.570 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFA 369 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~ 369 (845)
.++|.||||+|||++|++||..++.+|+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999988774
No 150
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.97 E-value=0.0004 Score=68.78 Aligned_cols=32 Identities=41% Similarity=0.670 Sum_probs=27.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh-cCCCeEEe
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGE-AGVPFFAA 370 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~e-lg~pfi~v 370 (845)
+..++|+|+||||||++++.+|.. +|.+++.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 457999999999999999999999 68777643
No 151
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.96 E-value=0.00045 Score=66.90 Aligned_cols=36 Identities=22% Similarity=0.606 Sum_probs=29.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHH
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFV 376 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~ 376 (845)
+..+.|+|||||||||+++.+|+.++.+++ ++.++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i--d~d~~~ 39 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY--DSDQEI 39 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE--EHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE--eccHHH
Confidence 456999999999999999999999987665 444443
No 152
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.96 E-value=0.00053 Score=68.48 Aligned_cols=34 Identities=38% Similarity=0.579 Sum_probs=29.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAA 370 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~v 370 (845)
..|.-|+|.|+||+|||++|+.|+..++.+++.+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3456799999999999999999999999887654
No 153
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.94 E-value=0.0034 Score=66.17 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el 363 (845)
...-++|+||||+|||+|++.++..+
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999998643
No 154
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.93 E-value=0.0015 Score=71.06 Aligned_cols=72 Identities=15% Similarity=0.204 Sum_probs=45.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc-----CCCeEEeechhHH----Hhhhhhh--------hhhHHHH-HH---H---HHh
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEA-----GVPFFAANGTDFV----EMFVGVA--------ASRVKDL-FA---S---ARS 396 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~el-----g~pfi~vs~sdf~----~~~vG~~--------~~~vr~l-F~---~---A~~ 396 (845)
-++|+||||+|||+|+-.++.++ +...+++++.+-. ..-.|.. +.....+ ++ . .+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 46899999999999988775543 5677777764311 1111211 1122233 22 2 245
Q ss_pred cCCcEEEEcccchhcc
Q 043051 397 FAPSIIFIDEIDAIGS 412 (845)
Q Consensus 397 ~aP~ILfIDEIDaL~~ 412 (845)
..|.+|+||-|.++.+
T Consensus 110 ~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 110 GEKVVVFIDSLGNLAS 125 (333)
T ss_dssp TCCEEEEEECSTTCBC
T ss_pred cCceEEEEeccccccc
Confidence 5799999999999975
No 155
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.92 E-value=0.00052 Score=67.20 Aligned_cols=33 Identities=30% Similarity=0.456 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAA 370 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~elg~pfi~v 370 (845)
.|+-++|.|+||||||++|+.++..++.+++..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 466799999999999999999999999766643
No 156
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.92 E-value=0.0005 Score=66.56 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=28.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAGVPFFAA 370 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg~pfi~v 370 (845)
..++|.|+||||||++++.||..+|.|++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4799999999999999999999999998753
No 157
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.90 E-value=0.00048 Score=67.57 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=29.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHH
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFV 376 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~ 376 (845)
|.-|+|.|+|||||||+|+.++..++.+++ +..++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i--~~d~~~ 38 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL--SAGELL 38 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEE--eHHHHH
Confidence 567999999999999999999999998765 444444
No 158
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.88 E-value=0.0072 Score=61.28 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=72.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCeEEe---ech------hHHHhhh-----------------hhhhhhHHHHH
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEA---GVPFFAA---NGT------DFVEMFV-----------------GVAASRVKDLF 391 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~el---g~pfi~v---s~s------df~~~~v-----------------G~~~~~vr~lF 391 (845)
.|++|+++|+|||++|-++|-.+ |.++..+ .+. .+.+.+. .......+..+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 58899999999999999997655 7777766 321 2333331 00123445556
Q ss_pred HHHHhc----CCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccC
Q 043051 392 ASARSF----APSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKG 467 (845)
Q Consensus 392 ~~A~~~----aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpg 467 (845)
+.+++. ...+|++||+-....-. . .....+.++|.. .+.+.-||.|+|.+. +.|+.
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g----~-----l~~~ev~~~l~~------Rp~~~~vIlTGr~ap---~~l~e-- 169 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYD----Y-----LPLEEVISALNA------RPGHQTVIITGRGCH---RDILD-- 169 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTT----S-----SCHHHHHHHHHT------SCTTCEEEEECSSCC---HHHHH--
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCC----C-----CCHHHHHHHHHh------CcCCCEEEEECCCCc---HHHHH--
Confidence 666543 36799999996642211 0 012335566654 344477888888764 78887
Q ss_pred cccEEEEeC
Q 043051 468 RFDKIVRVG 476 (845)
Q Consensus 468 RFdr~I~v~ 476 (845)
.-|.+-++.
T Consensus 170 ~AD~VTem~ 178 (196)
T 1g5t_A 170 LADTVSELR 178 (196)
T ss_dssp HCSEEEECC
T ss_pred hCcceeeec
Confidence 777776664
No 159
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.87 E-value=0.0022 Score=72.84 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=30.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCeEEeec
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA----GVPFFAANG 372 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el----g~pfi~vs~ 372 (845)
|..+..-++|.|+||+|||+|+..+|..+ |.++.+++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 55556679999999999999999997753 567777764
No 160
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.84 E-value=0.00053 Score=66.48 Aligned_cols=30 Identities=30% Similarity=0.431 Sum_probs=24.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHH-hcCCCeE
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAG-EAGVPFF 368 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~-elg~pfi 368 (845)
|+-++|.||||+||||+|+.++. ..+.+++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 56789999999999999999998 4554444
No 161
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.84 E-value=0.0028 Score=64.57 Aligned_cols=38 Identities=34% Similarity=0.311 Sum_probs=28.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh----cCCCeEEeec
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGE----AGVPFFAANG 372 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~e----lg~pfi~vs~ 372 (845)
|..+..-++|+|+||+|||++|..+|.+ .+.++++++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 3445566999999999999999887543 3677777664
No 162
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.84 E-value=0.0006 Score=67.19 Aligned_cols=32 Identities=22% Similarity=0.422 Sum_probs=28.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAA 370 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi~v 370 (845)
+.-++|.|+||+||||+|+.||..++.+++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 45799999999999999999999999877644
No 163
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.83 E-value=0.00074 Score=67.49 Aligned_cols=31 Identities=35% Similarity=0.730 Sum_probs=27.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFFA 369 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi~ 369 (845)
++-|+|.|+||+||||+|+.|++.+|.+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 5679999999999999999999999877764
No 164
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.82 E-value=0.011 Score=68.92 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=54.9
Q ss_pred cEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCC--CCChhhhccCcccEEEEeCC
Q 043051 400 SIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLD--ILDPALLRKGRFDKIVRVGL 477 (845)
Q Consensus 400 ~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd--~LDpALlRpgRFdr~I~v~~ 477 (845)
-+|+|||++.+.... ..+....+.++...- ..-.|.+|.+|.+|. .|+..++. -|...|.+..
T Consensus 345 ivvVIDE~~~L~~~~--------~~~~~~~L~~Iar~G-----Ra~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv 409 (574)
T 2iut_A 345 IVVVVDEFADMMMIV--------GKKVEELIARIAQKA-----RAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQV 409 (574)
T ss_dssp EEEEESCCTTHHHHT--------CHHHHHHHHHHHHHC-----TTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECC
T ss_pred EEEEEeCHHHHhhhh--------hHHHHHHHHHHHHHH-----hhCCeEEEEEecCcccccccHHHHh--hhccEEEEEc
Confidence 489999999886421 234555666666552 233499999999988 78888887 7888899999
Q ss_pred CCHhHHHHHHH
Q 043051 478 PSKDGRFAILK 488 (845)
Q Consensus 478 Pd~eeR~eIL~ 488 (845)
.+..+...||.
T Consensus 410 ~s~~Dsr~ILd 420 (574)
T 2iut_A 410 SSKIDSRTILD 420 (574)
T ss_dssp SCHHHHHHHHS
T ss_pred CCHHHHHHhcC
Confidence 99888877764
No 165
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.81 E-value=0.0014 Score=76.89 Aligned_cols=71 Identities=30% Similarity=0.393 Sum_probs=44.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHH----hhhhhhhhhHHHHHHHHH---------hcCCcEEE
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVE----MFVGVAASRVKDLFASAR---------SFAPSIIF 403 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~----~~vG~~~~~vr~lF~~A~---------~~aP~ILf 403 (845)
..++|.||||||||+++++++..+ +.++..+..+.-.. ...|.....+..++.... .....+|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 468999999999999999997644 66666654432211 112223334444442111 11347999
Q ss_pred Ecccchh
Q 043051 404 IDEIDAI 410 (845)
Q Consensus 404 IDEIDaL 410 (845)
|||+..+
T Consensus 285 IDEasml 291 (574)
T 3e1s_A 285 VDEVSMM 291 (574)
T ss_dssp ECCGGGC
T ss_pred EcCccCC
Confidence 9999887
No 166
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.80 E-value=0.00057 Score=65.36 Aligned_cols=29 Identities=34% Similarity=0.603 Sum_probs=25.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAA 370 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~v 370 (845)
-++|.||||+|||++|+.+ ...|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5889999999999999999 8889887754
No 167
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.80 E-value=0.00066 Score=68.89 Aligned_cols=33 Identities=27% Similarity=0.401 Sum_probs=28.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAA 370 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~elg~pfi~v 370 (845)
.+.-|+|.|+||+||||+|+.||..++.+++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 356799999999999999999999999876643
No 168
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.79 E-value=0.00075 Score=70.71 Aligned_cols=32 Identities=41% Similarity=0.490 Sum_probs=28.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEeec
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAANG 372 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~vs~ 372 (845)
-++|.||||||||++|++||+.++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999998887664
No 169
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.78 E-value=0.0011 Score=65.03 Aligned_cols=38 Identities=29% Similarity=0.497 Sum_probs=32.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhH
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDF 375 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf 375 (845)
.+.-+.|.|++|+||||+++.+++.+ |.|++.+++..+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 45678899999999999999999987 999998876443
No 170
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.76 E-value=0.0029 Score=71.67 Aligned_cols=38 Identities=26% Similarity=0.159 Sum_probs=30.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCeEEeec
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA----GVPFFAANG 372 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el----g~pfi~vs~ 372 (845)
|..+..-++|+|+||+|||+||..+|... |.++++++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 55566678999999999999999987643 567777765
No 171
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.76 E-value=0.00064 Score=66.32 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=23.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeE
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFF 368 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi 368 (845)
|.-++|.|+||+|||++|+.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 467999999999999999999999999987
No 172
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.76 E-value=0.00069 Score=69.18 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAA 370 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~elg~pfi~v 370 (845)
.|.-++|.|+||+|||++|+.||..++.+++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 356799999999999999999999998777643
No 173
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.75 E-value=0.013 Score=63.30 Aligned_cols=73 Identities=25% Similarity=0.289 Sum_probs=46.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHH-------hh---hh---------hhhhh-HHHHHH
Q 043051 336 IYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVE-------MF---VG---------VAASR-VKDLFA 392 (845)
Q Consensus 336 ~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~-------~~---vG---------~~~~~-vr~lF~ 392 (845)
...|+-++|+||+|+||||+++.+|..+ +..+..+++..+.. .+ .| ....+ +.+.+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 4567789999999999999999998865 55566555432211 11 01 01111 223455
Q ss_pred HHHhcCCcEEEEcccc
Q 043051 393 SARSFAPSIIFIDEID 408 (845)
Q Consensus 393 ~A~~~aP~ILfIDEID 408 (845)
.+....|.+|+||+.-
T Consensus 181 ~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 181 HALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHTTCSEEEEEECC
T ss_pred HHHhcCCCEEEEECCC
Confidence 5556678899999864
No 174
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.75 E-value=0.00074 Score=65.26 Aligned_cols=30 Identities=23% Similarity=0.488 Sum_probs=27.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAGVPFFA 369 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg~pfi~ 369 (845)
+.|+|.|+||+|||++|+.+|..+|.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 358999999999999999999999988764
No 175
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.74 E-value=0.00072 Score=66.77 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=27.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAA 370 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi~v 370 (845)
|+-|+|.|+||+|||++|+.|+..++.+++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 46799999999999999999999999666543
No 176
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.72 E-value=0.0024 Score=67.76 Aligned_cols=37 Identities=19% Similarity=0.163 Sum_probs=28.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCeEEee
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA----GVPFFAAN 371 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el----g~pfi~vs 371 (845)
|+....-++|.||||+|||+|++.+|..+ |.++++++
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 44555678999999999999999998764 54565554
No 177
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.71 E-value=0.00077 Score=66.03 Aligned_cols=31 Identities=35% Similarity=0.602 Sum_probs=27.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFFA 369 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi~ 369 (845)
+..++|.|+|||||||+++.+|..+|.+++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 3468999999999999999999999877654
No 178
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.71 E-value=0.00074 Score=68.60 Aligned_cols=32 Identities=28% Similarity=0.530 Sum_probs=28.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAA 370 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi~v 370 (845)
+..|+|.|+||+||||+|+.||..++.+++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 35689999999999999999999999877654
No 179
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.69 E-value=0.00069 Score=66.30 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAG 364 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg 364 (845)
+.-++|.||||+||||+++.|+..++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35689999999999999999999886
No 180
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.69 E-value=0.00088 Score=67.57 Aligned_cols=30 Identities=30% Similarity=0.610 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAA 370 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~v 370 (845)
.|+|.||||+||||+|+.|+.+++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999998887654
No 181
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.67 E-value=0.001 Score=68.60 Aligned_cols=39 Identities=18% Similarity=0.343 Sum_probs=31.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHH
Q 043051 336 IYCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFV 376 (845)
Q Consensus 336 ~~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~ 376 (845)
.+.|+-|+|.||||+||+|.|+.||..+|++.+ +..++.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI--stGdll 64 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL--SSGDLL 64 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE--CHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceE--cHHHHH
Confidence 345778999999999999999999999987665 444544
No 182
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.66 E-value=0.00099 Score=66.40 Aligned_cols=32 Identities=19% Similarity=0.348 Sum_probs=28.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAA 370 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi~v 370 (845)
++-|+|.|+||||||++++.|+..+|.+++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 56789999999999999999999998766654
No 183
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.66 E-value=0.00071 Score=68.72 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=27.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFA 369 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~elg~pfi~ 369 (845)
.|..++|.||||+||||+++.||..++.+++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 35679999999999999999999999976653
No 184
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.66 E-value=0.00096 Score=69.34 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=29.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAA 370 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~elg~pfi~v 370 (845)
.|.-|+|.||||+||||+|+.|+..++.+++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 467899999999999999999999998777644
No 185
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.66 E-value=0.0057 Score=63.23 Aligned_cols=36 Identities=28% Similarity=0.287 Sum_probs=29.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEeech-hHH
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGT-DFV 376 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~vs~s-df~ 376 (845)
.++++||+|+|||.+|.+++...+.+.+.+... ++.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~ 146 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALA 146 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHH
Confidence 489999999999999999998888777766654 444
No 186
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.65 E-value=0.00096 Score=67.20 Aligned_cols=30 Identities=30% Similarity=0.558 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAA 370 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~v 370 (845)
-|+|.||||+||||+|+.|+..+|.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999999887754
No 187
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.64 E-value=0.012 Score=67.87 Aligned_cols=75 Identities=16% Similarity=0.253 Sum_probs=51.4
Q ss_pred Cc-EEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCC--CCChhhhccCcccEEEEe
Q 043051 399 PS-IIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLD--ILDPALLRKGRFDKIVRV 475 (845)
Q Consensus 399 P~-ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd--~LDpALlRpgRFdr~I~v 475 (845)
|. +|+|||+..+.... ..+....+..+...- ..-.+.+|.+|.+|. .++..++. .|...|.+
T Consensus 297 P~ivlvIDE~~~ll~~~--------~~~~~~~l~~Lar~g-----Ra~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~l 361 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV--------GKKVEELIARLAQKA-----RAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAF 361 (512)
T ss_dssp CEEEEEEETHHHHHHHH--------HHHHHHHHHHHHHHC-----GGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEE
T ss_pred CcEEEEEeCHHHHHhhh--------hHHHHHHHHHHHHHh-----hhCCcEEEEEecCCccccccHHHHh--hcCCeEEE
Confidence 54 78999998875310 123334444444332 122388889999887 68888877 78888999
Q ss_pred CCCCHhHHHHHHH
Q 043051 476 GLPSKDGRFAILK 488 (845)
Q Consensus 476 ~~Pd~eeR~eIL~ 488 (845)
...+..+...|+.
T Consensus 362 rv~s~~dsr~ilg 374 (512)
T 2ius_A 362 TVSSKIDSRTILD 374 (512)
T ss_dssp CCSSHHHHHHHHS
T ss_pred EcCCHHHHHHhcC
Confidence 9999988888774
No 188
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.61 E-value=0.0011 Score=68.10 Aligned_cols=32 Identities=34% Similarity=0.436 Sum_probs=28.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAA 370 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi~v 370 (845)
+..|+|.|+||||||++|+.||..++.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 45799999999999999999999999877653
No 189
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.61 E-value=0.0011 Score=63.88 Aligned_cols=29 Identities=21% Similarity=0.458 Sum_probs=26.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFA 369 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~ 369 (845)
.|+|.|+||+|||++|+.++..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 48999999999999999999999988874
No 190
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.57 E-value=0.0014 Score=63.78 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=26.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFFA 369 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi~ 369 (845)
+..++|.||||+|||++++.+++.+|.+++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 4568999999999999999999998866553
No 191
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.57 E-value=0.0018 Score=65.08 Aligned_cols=24 Identities=38% Similarity=0.699 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el 363 (845)
|.|+|+||+|+|||+|++.|..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 469999999999999999997764
No 192
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.56 E-value=0.0015 Score=65.45 Aligned_cols=36 Identities=33% Similarity=0.603 Sum_probs=28.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhH
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDF 375 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf 375 (845)
.+.-+.|.||+|+||||+++.|++.+|..++ ++.++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i--~~d~~ 63 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFA--EADAF 63 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE--EGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEE--ccccc
Confidence 3567999999999999999999999976554 45443
No 193
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.53 E-value=0.0049 Score=61.92 Aligned_cols=23 Identities=43% Similarity=0.680 Sum_probs=20.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~el 363 (845)
-+.|.||+|+|||||++.+++.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 37899999999999999999875
No 194
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.51 E-value=0.0081 Score=64.87 Aligned_cols=38 Identities=24% Similarity=0.109 Sum_probs=29.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeec
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANG 372 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~ 372 (845)
|..+..-++|.|+||+|||+||..+|..+ +.++++++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 45555679999999999999999998654 456766654
No 195
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.47 E-value=0.0019 Score=71.27 Aligned_cols=68 Identities=25% Similarity=0.318 Sum_probs=43.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc----CCCeEEeec-hhHH---------HhhhhhhhhhHHHHHHHHHhcCCcEEEEcc
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEA----GVPFFAANG-TDFV---------EMFVGVAASRVKDLFASARSFAPSIIFIDE 406 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~el----g~pfi~vs~-sdf~---------~~~vG~~~~~vr~lF~~A~~~aP~ILfIDE 406 (845)
.++|.||+|+|||||.+++++.. +..++.+.- .++. ...++.....+.+.+..|....|.+|++||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 58899999999999999998865 222222211 0110 011122223455677788788999999999
Q ss_pred cc
Q 043051 407 ID 408 (845)
Q Consensus 407 ID 408 (845)
+-
T Consensus 205 p~ 206 (356)
T 3jvv_A 205 MR 206 (356)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 196
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.46 E-value=0.0017 Score=63.53 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=27.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC---CCeEEeechhH
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAG---VPFFAANGTDF 375 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg---~pfi~vs~sdf 375 (845)
-|+|.|+||+||||+|+.|+..++ .++..++.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~ 40 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDF 40 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChH
Confidence 489999999999999999999775 34555555444
No 197
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.46 E-value=0.0015 Score=68.99 Aligned_cols=70 Identities=21% Similarity=0.305 Sum_probs=43.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC---CeEEeechhH----------H-HhhhhhhhhhHHHHHHHHHhcCCcEEEE
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGV---PFFAANGTDF----------V-EMFVGVAASRVKDLFASARSFAPSIIFI 404 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~---pfi~vs~sdf----------~-~~~vG~~~~~vr~lF~~A~~~aP~ILfI 404 (845)
..-++|.||+|+|||||++++++.... --+.+.+..+ + ...+|.....++..+..+....|.+|++
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~illl 104 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFV 104 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEE
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEe
Confidence 345889999999999999999886421 1111211110 0 0011222234566777776678999999
Q ss_pred cccc
Q 043051 405 DEID 408 (845)
Q Consensus 405 DEID 408 (845)
||.-
T Consensus 105 DEp~ 108 (261)
T 2eyu_A 105 GEMR 108 (261)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9973
No 198
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.45 E-value=0.0025 Score=63.69 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=29.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhH
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDF 375 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf 375 (845)
.+.-+.|.||+|+||||++++||+.+ |...+.+++.++
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 35678899999999999999999987 544445565443
No 199
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.42 E-value=0.00085 Score=74.04 Aligned_cols=31 Identities=26% Similarity=0.470 Sum_probs=28.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAGVPFFAA 370 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg~pfi~v 370 (845)
..++|+||||+|||+++++||+.++.+|+.+
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l 55 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHTF 55 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeeee
Confidence 4699999999999999999999999888653
No 200
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.39 E-value=0.0018 Score=70.54 Aligned_cols=35 Identities=31% Similarity=0.532 Sum_probs=30.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeEEeech
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGT 373 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~s 373 (845)
++.++|+||+|||||++|+.||+.++.+++.++.-
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 56799999999999999999999999888877643
No 201
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.39 E-value=0.0028 Score=63.35 Aligned_cols=33 Identities=33% Similarity=0.430 Sum_probs=27.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhH
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDF 375 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf 375 (845)
..+.|.||+||||||+++.+++ +|.+++ ++.++
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~i--d~d~~ 35 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLV--DADVV 35 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEE--EHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCccc--chHHH
Confidence 4588999999999999999998 888776 44444
No 202
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.38 E-value=0.0028 Score=64.35 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el 363 (845)
.++-+.|.||+|+|||+|+++|++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45778999999999999999999865
No 203
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.37 E-value=0.0018 Score=65.47 Aligned_cols=30 Identities=30% Similarity=0.502 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAA 370 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~v 370 (845)
.++|.||||+||||+|+.|+..+|.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 379999999999999999999999877654
No 204
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.36 E-value=0.0021 Score=64.92 Aligned_cols=30 Identities=30% Similarity=0.471 Sum_probs=26.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAGVPFFA 369 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg~pfi~ 369 (845)
.-+.|.|||||||||+++.+++.+|++++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 468999999999999999999999977763
No 205
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.33 E-value=0.0039 Score=62.78 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=30.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHHhhhh
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVEMFVG 381 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~~~vG 381 (845)
-+.|+|++||||||+++.++..+|++++ ++.++.....+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vi--d~D~~~~~~~~ 52 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVV--NVDRIGHEVLE 52 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEE--ECcHHHHHHHH
Confidence 5789999999999999999998898776 45555544443
No 206
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.33 E-value=0.0031 Score=69.96 Aligned_cols=72 Identities=21% Similarity=0.348 Sum_probs=45.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcC----CCeEEeech-hH--------H-HhhhhhhhhhHHHHHHHHHhcCCcEE
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIAGEAG----VPFFAANGT-DF--------V-EMFVGVAASRVKDLFASARSFAPSII 402 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA~elg----~pfi~vs~s-df--------~-~~~vG~~~~~vr~lF~~A~~~aP~IL 402 (845)
.+...++|+||+|+||||+++++++... ..++.+... ++ + ...+|.....++..+..+....|.+|
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~i 213 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 213 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEE
Confidence 3445689999999999999999988652 222222210 00 0 00012223345667777777789999
Q ss_pred EEcccc
Q 043051 403 FIDEID 408 (845)
Q Consensus 403 fIDEID 408 (845)
++||+-
T Consensus 214 lldE~~ 219 (372)
T 2ewv_A 214 FVGEMR 219 (372)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999973
No 207
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.32 E-value=0.0027 Score=62.21 Aligned_cols=31 Identities=26% Similarity=0.192 Sum_probs=27.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCeEEee
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEA---GVPFFAAN 371 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~el---g~pfi~vs 371 (845)
-+.|.|+||+||||+++.++..+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999988 89988764
No 208
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.32 E-value=0.024 Score=64.14 Aligned_cols=198 Identities=15% Similarity=0.113 Sum_probs=96.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHH----------hhhhh----------hhhhHHHHHHHH
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVE----------MFVGV----------AASRVKDLFASA 394 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~----------~~vG~----------~~~~vr~lF~~A 394 (845)
.|.-+++.||+|+||||++..+|..+ |..+..+++.-+.. ...|. .....+..+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 47789999999999999999998755 66666665432211 11111 011123455566
Q ss_pred HhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCCCCCCChhhhccCccc----
Q 043051 395 RSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFD---- 470 (845)
Q Consensus 395 ~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~pd~LDpALlRpgRFd---- 470 (845)
....+.+|+||....+.. .........+..++.... ...-++|+-++...+.+ .+.+ +|.
T Consensus 176 ~~~~~DvvIIDTaGr~~~--------~~d~~lm~el~~i~~~~~----pd~vlLVlDa~~gq~a~--~~a~--~f~~~~~ 239 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGY--------GEETKLLEEMKEMYDVLK----PDDVILVIDASIGQKAY--DLAS--RFHQASP 239 (433)
T ss_dssp TTTTCSEEEEEECCCSSS--------CCTTHHHHHHHHHHHHHC----CSEEEEEEEGGGGGGGH--HHHH--HHHHHCS
T ss_pred HhcCCCEEEEECCCCccc--------cCCHHHHHHHHHHHHhhC----CcceEEEEeCccchHHH--HHHH--HHhcccC
Confidence 655788999998754310 012233344444444431 22323444444432221 1222 333
Q ss_pred -EEEEeCCCCHhHHHHHHHHHHh--hhcc-------cchhhhhhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHc-----
Q 043051 471 -KIVRVGLPSKDGRFAILKVHAR--NKYF-------RSEEEKDVLLQEIAELTEDFTGAELQNILNEAGILTARK----- 535 (845)
Q Consensus 471 -r~I~v~~Pd~eeR~eIL~~~l~--~~~l-------~~~~~~d~dl~~LA~~t~GfSgaDL~~LvneAal~A~r~----- 535 (845)
..+-+...|...+....-.... ..++ ..++....+.+.++...-|+ .|+..++..|.-.....
T Consensus 240 ~~gVIlTKlD~~a~~G~als~~~~~g~Pi~fig~Ge~v~dL~~f~p~~~~~~llg~--gd~~~l~e~~~~~~~~~~~~~~ 317 (433)
T 3kl4_A 240 IGSVIITKMDGTAKGGGALSAVVATGATIKFIGTGEKIDELETFNAKRFVSRILGM--GDIESILEKVKGLEEYDKIQKK 317 (433)
T ss_dssp SEEEEEECGGGCSCHHHHHHHHHHHTCEEEEEECCSSSSCEEECCHHHHHHHHHCS--SHHHHHHHHHHHC---------
T ss_pred CcEEEEecccccccchHHHHHHHHHCCCEEEEECCCChHhCccCCHHHHHHHhcCC--chHHHHHHHHHHhhhHHHHHHH
Confidence 2455666665544332222221 2221 11111223455666655443 37777776664221111
Q ss_pred ----CCC--ccCHHHHHHHHHhcc
Q 043051 536 ----DLD--YIGQEELLEALKRQK 553 (845)
Q Consensus 536 ----~~~--~It~edl~~Al~r~k 553 (845)
... ..|.+||.+.+..++
T Consensus 318 ~~k~~~g~~~f~~~d~~~q~~~~~ 341 (433)
T 3kl4_A 318 MEDVMEGKGKLTLRDVYAQIIALR 341 (433)
T ss_dssp ----------CCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHH
Confidence 112 577777777777664
No 209
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.30 E-value=0.0022 Score=65.36 Aligned_cols=34 Identities=35% Similarity=0.572 Sum_probs=28.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHH
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFV 376 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~ 376 (845)
-++|.||||+||+|.|+.||+..|++.+ +..++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i--stGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI--STGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHHH
Confidence 3789999999999999999999988765 444544
No 210
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.30 E-value=0.0027 Score=62.97 Aligned_cols=33 Identities=18% Similarity=0.118 Sum_probs=28.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc-CCCeEEee
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA-GVPFFAAN 371 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el-g~pfi~vs 371 (845)
++-|.|.|+||+||||+++.|+..+ |.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 5678999999999999999999998 57877665
No 211
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.27 E-value=0.0068 Score=61.04 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=31.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc----CCCeEEeechhHH
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA----GVPFFAANGTDFV 376 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el----g~pfi~vs~sdf~ 376 (845)
.+.-++|.|+||+|||++++.+++.+ |.+++.+++..+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 35678999999999999999999865 5678888765543
No 212
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.26 E-value=0.002 Score=64.29 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=25.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAA 370 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~v 370 (845)
-+.|+|++||||||+++.+++ +|++++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 488999999999999999999 88777654
No 213
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.26 E-value=0.0028 Score=65.51 Aligned_cols=31 Identities=29% Similarity=0.572 Sum_probs=27.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFFA 369 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi~ 369 (845)
|.-+.|.||||+||||+++.|+..+|...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 5679999999999999999999999876653
No 214
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.22 E-value=0.0024 Score=63.07 Aligned_cols=30 Identities=23% Similarity=0.509 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAA 370 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~v 370 (845)
-+.|.|+||+||||+++.|++.++.+++..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e 31 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKE 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcc
Confidence 378999999999999999999999877643
No 215
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.20 E-value=0.0033 Score=62.42 Aligned_cols=30 Identities=33% Similarity=0.718 Sum_probs=27.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAA 370 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~v 370 (845)
-+.|.|++|+|||++++.+|+.+|.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 688999999999999999999999888753
No 216
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.18 E-value=0.003 Score=62.46 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=29.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHHH
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFVE 377 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~~ 377 (845)
|.-|.|.|++|||||++++.||+. |.+++ +..++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~i--d~d~~~~ 43 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVL--DLDALAA 43 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEE--EHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEE--cccHHHH
Confidence 567999999999999999999998 87776 4445543
No 217
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.16 E-value=0.0018 Score=64.59 Aligned_cols=31 Identities=16% Similarity=0.083 Sum_probs=26.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeE
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEAGVPFF 368 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~elg~pfi 368 (845)
.++-|+|.|+|||||||+++.|+..++.+++
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~ 39 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNV 39 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 3567999999999999999999998765443
No 218
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.12 E-value=0.0038 Score=61.41 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=26.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCeEEee
Q 043051 342 VLLHGPPGTGKTLLAKAIAGEA---GVPFFAAN 371 (845)
Q Consensus 342 VLL~GPPGTGKT~LArALA~el---g~pfi~vs 371 (845)
|.|.|++||||||+++.++..+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999998 99988654
No 219
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.09 E-value=0.0032 Score=64.33 Aligned_cols=29 Identities=21% Similarity=0.492 Sum_probs=25.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFA 369 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~ 369 (845)
-++|.||||+||||+|+.|+..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 37899999999999999999999876654
No 220
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.05 E-value=0.0047 Score=64.17 Aligned_cols=39 Identities=18% Similarity=0.163 Sum_probs=32.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCe--------EEeechhHH
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEAGVPF--------FAANGTDFV 376 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~elg~pf--------i~vs~sdf~ 376 (845)
.|.-|.|.|+||||||++|+.|+..+|.++ ..++..+|.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 356799999999999999999999999874 356666654
No 221
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.01 E-value=0.0023 Score=63.94 Aligned_cols=29 Identities=14% Similarity=0.180 Sum_probs=24.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCC
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEAGVP 366 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~elg~p 366 (845)
.|.-|+|.|+|||||||+++.|+..++.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35679999999999999999999976433
No 222
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.01 E-value=0.0041 Score=64.75 Aligned_cols=31 Identities=29% Similarity=0.580 Sum_probs=27.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFFA 369 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi~ 369 (845)
|..+.|.||||+|||++++.||+.+|.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 5679999999999999999999999977653
No 223
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.99 E-value=0.0062 Score=61.03 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=24.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcC
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIAGEAG 364 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA~elg 364 (845)
..++-++|.||||+|||++++.|+..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4467799999999999999999999874
No 224
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.93 E-value=0.0063 Score=61.39 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=23.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAG 364 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg 364 (845)
++-+.|.||+|+|||++++.|++...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45688999999999999999998764
No 225
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.92 E-value=0.0043 Score=61.57 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=24.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCC
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVP 366 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~p 366 (845)
++-|+|.|+||+||||+|+.|+..++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 4568999999999999999999988764
No 226
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.90 E-value=0.038 Score=55.92 Aligned_cols=70 Identities=19% Similarity=0.146 Sum_probs=43.8
Q ss_pred CceEEEEcCCCChHH-HHHHHHHH--hcCCCeEEeech---hHHHh---hhhhh-----hhhHHHHHHHHHhcCCcEEEE
Q 043051 339 PKGVLLHGPPGTGKT-LLAKAIAG--EAGVPFFAANGT---DFVEM---FVGVA-----ASRVKDLFASARSFAPSIIFI 404 (845)
Q Consensus 339 PrgVLL~GPPGTGKT-~LArALA~--elg~pfi~vs~s---df~~~---~vG~~-----~~~vr~lF~~A~~~aP~ILfI 404 (845)
.+-.++|||.|+||| .|.+++.+ +.+..++.+... .+.+. ..|.. .....++++..+ ...+|+|
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~--~~DvIlI 97 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEAL--GVAVIGI 97 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHH--TCSEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhcc--CCCEEEE
Confidence 355789999999999 89999855 457777777643 22111 11210 122334444333 2469999
Q ss_pred cccchh
Q 043051 405 DEIDAI 410 (845)
Q Consensus 405 DEIDaL 410 (845)
||+.-+
T Consensus 98 DEaQFf 103 (195)
T 1w4r_A 98 DEGQFF 103 (195)
T ss_dssp SSGGGC
T ss_pred Echhhh
Confidence 999988
No 227
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.89 E-value=0.0049 Score=60.29 Aligned_cols=21 Identities=38% Similarity=0.479 Sum_probs=18.1
Q ss_pred CCceEEEEcCCCChHHHHHHH
Q 043051 338 CPKGVLLHGPPGTGKTLLAKA 358 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArA 358 (845)
.+.-+.|.||+|+|||||+++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 345688999999999999994
No 228
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.88 E-value=0.008 Score=59.04 Aligned_cols=37 Identities=32% Similarity=0.334 Sum_probs=29.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechh
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTD 374 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sd 374 (845)
.+.-++|.|+||+|||++++.+|..+ |.++..+++..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 45678999999999999999999876 44555555443
No 229
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.88 E-value=0.003 Score=68.93 Aligned_cols=70 Identities=21% Similarity=0.274 Sum_probs=47.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC--CCeEEeechh-H-----HHh--hhhhhhhhHHHHHHHHHhcCCcEEEEcccch
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAG--VPFFAANGTD-F-----VEM--FVGVAASRVKDLFASARSFAPSIIFIDEIDA 409 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg--~pfi~vs~sd-f-----~~~--~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDa 409 (845)
..++|.||+|+|||||++++++... .-.+.+.+.. + ... ++..+..+.+..+..|....|.+|++||.-.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 4699999999999999999998763 2234443321 1 000 1100345667778888888999999999643
No 230
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.87 E-value=0.0045 Score=65.04 Aligned_cols=31 Identities=35% Similarity=0.592 Sum_probs=28.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAGVPFFAA 370 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg~pfi~v 370 (845)
..+.|.|++|+|||++++.+|+.+|.+|+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 4699999999999999999999999887753
No 231
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.83 E-value=0.0083 Score=59.03 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=22.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAG 364 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg 364 (845)
.+-+.|.||+|+|||||++.|++...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45689999999999999999998753
No 232
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.78 E-value=0.0039 Score=66.10 Aligned_cols=30 Identities=30% Similarity=0.428 Sum_probs=25.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc-CCCeE
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA-GVPFF 368 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el-g~pfi 368 (845)
|+-++|.|+||+||||+|+.++... +.+++
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 4678999999999999999999864 54444
No 233
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.77 E-value=0.038 Score=63.77 Aligned_cols=96 Identities=20% Similarity=0.225 Sum_probs=58.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechh----HHHhh--hh----------------------hh
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTD----FVEMF--VG----------------------VA 383 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sd----f~~~~--vG----------------------~~ 383 (845)
++....-++|.||||+|||+|++.+++.. |.+.+++...+ +.... .| .+
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 44445668999999999999999998754 44555554321 11100 00 12
Q ss_pred hhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhh
Q 043051 384 ASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEM 437 (845)
Q Consensus 384 ~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~em 437 (845)
....+.++..+....|.+|+||=+..+-.. .........+.+++..+
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~~-------~~~~~~~~~i~~ll~~l 403 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALARG-------VSNNAFRQFVIGVTGYA 403 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTSS-------SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHhh-------CChHHHHHHHHHHHHHH
Confidence 234556667777778999999977766321 11122445566666654
No 234
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.77 E-value=0.0044 Score=67.97 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=30.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeEEeech
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGT 373 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~s 373 (845)
++-++|.||+|||||+|+..||+.++.+++..+.-
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 45789999999999999999999999888776643
No 235
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.76 E-value=0.0051 Score=61.92 Aligned_cols=32 Identities=28% Similarity=0.537 Sum_probs=28.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAA 370 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi~v 370 (845)
|..+.|+|++|||||++++.++..+|.+++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 45689999999999999999999999877643
No 236
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.76 E-value=0.0064 Score=61.17 Aligned_cols=27 Identities=33% Similarity=0.543 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcC
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEAG 364 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~elg 364 (845)
.+.-+.|.||+|+|||||++.|++.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 355688999999999999999999874
No 237
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.75 E-value=0.024 Score=66.80 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=19.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~e 362 (845)
+-+++.||||||||+++.++...
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 46899999999999998887544
No 238
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.73 E-value=0.0047 Score=61.84 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=25.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc-CCCeEE
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA-GVPFFA 369 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el-g~pfi~ 369 (845)
+.-+.|.||||+||||+++.+++.+ +++++.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 4557899999999999999999987 555543
No 239
>2lna_A AFG3-like protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, MPP, hydrolase; NMR {Homo sapiens}
Probab=95.71 E-value=0.01 Score=53.64 Aligned_cols=76 Identities=18% Similarity=0.220 Sum_probs=48.7
Q ss_pred CCccccHHHHH-HHHHcCCccEEEEEeCCcEEEEEcceecCCcccCCCCCCCCccceeEEEEecCCCCChhhHHHHHHhC
Q 043051 134 NSHRIDFSDFW-KLLNSNSVQYMEYSNYGQTVSVILPYYKDAKVEGKEGNPGKDIIYRRHVVDRMPIDCWNDVWQKLHQQ 212 (845)
Q Consensus 134 ~~~~~~~~~f~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (845)
+.++|||++|. ++|++|.|++|.+.+ .+.+.|+ ++.+... +... .|... +++.+.|.+.|.+.
T Consensus 14 ~~~eIs~~eF~~~~L~kG~V~kI~V~n-k~~v~V~---l~~~a~~------~~~~---~~~f~---IGSvd~FE~~Le~a 77 (99)
T 2lna_A 14 SGREITWKDFVNNYLSKGVVDRLEVVN-KRFVRVT---FTPGKTP------VDGQ---YVWFN---IGSVDTFERNLETL 77 (99)
T ss_dssp SSEECCHHHHHHHTGGGTCEEEEEEET-TTEEEEE---ECTTTSC------STTC---CEEEE---CSCHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHhhCCCceEEEEEc-CCEEEEE---EcCCCcC------CCCc---eEEEE---eCCHHHHHHHHHHH
Confidence 45789999999 799999999999875 5678844 4544321 1111 13334 34578899999876
Q ss_pred CCeEEEecccccc
Q 043051 213 VVNVDVVNVNTVS 225 (845)
Q Consensus 213 ~~~~~~~~~~~~~ 225 (845)
+-+..+.+.+++|
T Consensus 78 Q~el~i~~~~~ip 90 (99)
T 2lna_A 78 QQELGIEGENRVP 90 (99)
T ss_dssp HHHTTCCTTTCCC
T ss_pred HHHcCCCcccccC
Confidence 5444444443443
No 240
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.69 E-value=0.027 Score=64.62 Aligned_cols=38 Identities=13% Similarity=-0.006 Sum_probs=30.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCeEEeec
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA----GVPFFAANG 372 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el----g~pfi~vs~ 372 (845)
|..+..-++|.|+||+|||+||..+|..+ |.++.+++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 45556679999999999999999997754 567777765
No 241
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.69 E-value=0.0071 Score=61.00 Aligned_cols=30 Identities=33% Similarity=0.426 Sum_probs=26.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFFA 369 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi~ 369 (845)
|.-|.|.|++|+||||+++.|+. +|.+++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id 33 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVID 33 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence 45789999999999999999998 8877664
No 242
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.67 E-value=0.028 Score=55.60 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el 363 (845)
+.+++.+|+|+|||+++-.++.+.
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 469999999999999998876643
No 243
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.65 E-value=0.04 Score=54.38 Aligned_cols=19 Identities=37% Similarity=0.434 Sum_probs=15.9
Q ss_pred ceEEEEcCCCChHHHHHHH
Q 043051 340 KGVLLHGPPGTGKTLLAKA 358 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArA 358 (845)
+.+++.+|+|+|||+.+-.
T Consensus 39 ~~~li~~~TGsGKT~~~~~ 57 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFAL 57 (207)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 5799999999999987433
No 244
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.65 E-value=0.022 Score=62.44 Aligned_cols=38 Identities=21% Similarity=0.119 Sum_probs=29.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeec
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANG 372 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~ 372 (845)
|..+..-++|.|+||+|||+||..+|..+ +.++.+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 45555669999999999999999997764 677766654
No 245
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.65 E-value=0.0077 Score=61.84 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=28.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFA 369 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA~elg~pfi~ 369 (845)
..+..+.|.|++|+|||++++.+|+.+|.+++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 345678999999999999999999999987764
No 246
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.64 E-value=0.0064 Score=65.92 Aligned_cols=36 Identities=31% Similarity=0.512 Sum_probs=30.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeEEeech
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGT 373 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~s 373 (845)
.|+-++|.||+|+|||+||..+|...+.+++..+.-
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 366789999999999999999999998877766543
No 247
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.57 E-value=0.0079 Score=62.70 Aligned_cols=29 Identities=31% Similarity=0.503 Sum_probs=26.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeE
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAGVPFF 368 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg~pfi 368 (845)
.-+.|.||+|+||||+++.||+.+|.+++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 46889999999999999999999998766
No 248
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.56 E-value=0.023 Score=65.77 Aligned_cols=41 Identities=27% Similarity=0.416 Sum_probs=32.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHHHhh
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFVEMF 379 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~~~~ 379 (845)
|.-|+|+|.||+|||++|+.||..+ +.+...++..++....
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~ 78 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREA 78 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHh
Confidence 5578999999999999999999988 4555667776665543
No 249
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.52 E-value=0.028 Score=59.44 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=21.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
..-+.|.||+|+|||||++++++-.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3458899999999999999998854
No 250
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.52 E-value=0.049 Score=62.87 Aligned_cols=113 Identities=14% Similarity=0.215 Sum_probs=63.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHH--HHHhc--CCCeEEeechhHHHh------hhhhh----------------------
Q 043051 336 IYCPKGVLLHGPPGTGKTLLAKA--IAGEA--GVPFFAANGTDFVEM------FVGVA---------------------- 383 (845)
Q Consensus 336 ~~~PrgVLL~GPPGTGKT~LArA--LA~el--g~pfi~vs~sdf~~~------~vG~~---------------------- 383 (845)
+.....++|.||+|+|||+|++. +++.. +..-+++++.+.... .+|..
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~ 115 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQ 115 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCC
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchh
Confidence 34456799999999999999999 44533 445566655331100 00000
Q ss_pred --------hhhHHHHHHHHHhcCCcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEEcCC
Q 043051 384 --------ASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNR 455 (845)
Q Consensus 384 --------~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaaTN~ 455 (845)
...............|.+|+|||+-++... .+.+......+..++..+.. .+ +.||.+|+.
T Consensus 116 ~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~------~~lD~~~~~~l~~ll~~l~~----~g-~tvl~itH~ 184 (525)
T 1tf7_A 116 EVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ------YDASSVVRRELFRLVARLKQ----IG-ATTVMTTER 184 (525)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT------TCCHHHHHHHHHHHHHHHHH----HT-CEEEEEEEC
T ss_pred hhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHh------cCCHHHHHHHHHHHHHHHHH----CC-CEEEEEecC
Confidence 011122222333456889999999876321 11233445567777776531 23 566667776
Q ss_pred CCCC
Q 043051 456 LDIL 459 (845)
Q Consensus 456 pd~L 459 (845)
.+.+
T Consensus 185 ~~~~ 188 (525)
T 1tf7_A 185 IEEY 188 (525)
T ss_dssp SSSS
T ss_pred CCCc
Confidence 6654
No 251
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.49 E-value=0.0075 Score=59.74 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el 363 (845)
.+.-+.|.||+|+||||+++.+++..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 35678999999999999999999876
No 252
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.48 E-value=0.025 Score=56.54 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=29.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechh
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTD 374 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sd 374 (845)
.+.-+.|.||+|+|||++++.+++.+ +.+++..+...
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 35668899999999999999999875 66666654443
No 253
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.48 E-value=0.026 Score=64.06 Aligned_cols=38 Identities=24% Similarity=0.109 Sum_probs=30.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeec
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANG 372 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~ 372 (845)
|..+..-++|.|+||+|||+||-.+|..+ |.++.+++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 55556679999999999999999987654 667777764
No 254
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.47 E-value=0.0071 Score=64.28 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=28.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHH
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFV 376 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~ 376 (845)
|.-|.|+|+|||||||+|+.++ ++|.+++ ++.++.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~i--d~D~~~ 109 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYII--DSDHLG 109 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEE--EHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEE--ehhHHH
Confidence 5669999999999999999999 6787665 444543
No 255
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.46 E-value=0.012 Score=66.11 Aligned_cols=32 Identities=28% Similarity=0.369 Sum_probs=27.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEAGVPFFA 369 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~elg~pfi~ 369 (845)
.|.-|+|+|+||+|||++|+.++..++..++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 35679999999999999999999998766553
No 256
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.40 E-value=0.03 Score=60.12 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc----CCCeEEeech
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA----GVPFFAANGT 373 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el----g~pfi~vs~s 373 (845)
.+..++|.||+|+||||++..+|..+ |..+..+++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 46789999999999999999998654 5566666553
No 257
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.37 E-value=0.025 Score=66.81 Aligned_cols=38 Identities=29% Similarity=0.497 Sum_probs=33.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhH
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDF 375 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf 375 (845)
.+.-|+|+|+||+||||+|++|+..+ |.+++.+++..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 35679999999999999999999998 999999876544
No 258
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.30 E-value=0.013 Score=57.68 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=26.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhHH
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGTDFV 376 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~vs~sdf~ 376 (845)
-++|.||+|+||||+++.+++..+. .+.+++.++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~~ 38 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDIIN 38 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccchh
Confidence 4789999999999999999985542 2445555543
No 259
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.19 E-value=0.011 Score=64.95 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=28.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeEEeec
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANG 372 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~ 372 (845)
++-++|.||+|+|||+||+.||..++..++..+.
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 3568999999999999999999999866655443
No 260
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.16 E-value=0.015 Score=58.24 Aligned_cols=25 Identities=44% Similarity=0.765 Sum_probs=22.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
++.+.|.||+|+|||||++.+++..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4568999999999999999999865
No 261
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.14 E-value=0.013 Score=59.29 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=27.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFA 369 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~ 369 (845)
-|.|.||+|||||++++.||..+|.+|+-
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58899999999999999999999999983
No 262
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.11 E-value=0.011 Score=64.20 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=28.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeEEeec
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANG 372 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~ 372 (845)
++-++|.||+|+|||+||..+|...+..++..+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 36 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS 36 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCc
Confidence 3468899999999999999999998876665554
No 263
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.05 E-value=0.011 Score=59.09 Aligned_cols=30 Identities=37% Similarity=0.526 Sum_probs=25.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC--CCeE
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAG--VPFF 368 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg--~pfi 368 (845)
+.-+.|.||+|+|||||++.+++.++ +.++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v 37 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLGERVALL 37 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHGGGEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 45688999999999999999999877 4444
No 264
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.03 E-value=0.33 Score=48.40 Aligned_cols=59 Identities=22% Similarity=0.220 Sum_probs=35.8
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCC---CCceEEEEcCCCChHHHHHHHHHHh
Q 043051 302 GVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIY---CPKGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 302 ~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~---~PrgVLL~GPPGTGKT~LArALA~e 362 (845)
..+|+++.-.+.+.+.|.+. .+..+..++...+. ..+.+++.+|+|+|||+.+-..+-+
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHT--TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHH
Confidence 45688887777776666542 12233333322111 1357999999999999877655543
No 265
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.96 E-value=0.011 Score=60.24 Aligned_cols=32 Identities=28% Similarity=0.428 Sum_probs=26.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAAN 371 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs 371 (845)
.++++|.||+|+|||+||.+++...+ +++..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 57899999999999999999998866 555444
No 266
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.94 E-value=0.14 Score=54.63 Aligned_cols=59 Identities=17% Similarity=0.148 Sum_probs=34.9
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCC----CCceEEEEcCCCChHHHHHHHHHHh
Q 043051 302 GVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIY----CPKGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 302 ~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~----~PrgVLL~GPPGTGKT~LArALA~e 362 (845)
..+|+++.-.+.+.+.|.+. .+..+..++...+. ..+.+++.+|+|+|||+.+-..+-+
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNK--GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHH
T ss_pred cCchhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHH
Confidence 45677776666666665542 12223333322111 1368999999999999987655443
No 267
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.92 E-value=0.015 Score=57.60 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=22.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
+.-+.|.||+|+|||||++.+++..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4468899999999999999999975
No 268
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.90 E-value=0.014 Score=67.60 Aligned_cols=70 Identities=20% Similarity=0.230 Sum_probs=46.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC--CCeEEeechh-HHH---hh--------hhhhhhhHHHHHHHHHhcCCcEEEE
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAG--VPFFAANGTD-FVE---MF--------VGVAASRVKDLFASARSFAPSIIFI 404 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg--~pfi~vs~sd-f~~---~~--------vG~~~~~vr~lF~~A~~~aP~ILfI 404 (845)
+.+++|.||+|+||||+++++++... ...+.+.+.. +.- .. ++...-.+.+++..+..+.|.++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEe
Confidence 35799999999999999999998773 2344444332 110 00 0111224556677777789999999
Q ss_pred cccc
Q 043051 405 DEID 408 (845)
Q Consensus 405 DEID 408 (845)
+|+-
T Consensus 340 gEir 343 (511)
T 2oap_1 340 GEVR 343 (511)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 9963
No 269
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.89 E-value=0.014 Score=57.57 Aligned_cols=25 Identities=36% Similarity=0.650 Sum_probs=22.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAG 364 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg 364 (845)
+-+.|.||+|+|||||++.|++...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999998753
No 270
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.86 E-value=0.11 Score=52.25 Aligned_cols=70 Identities=14% Similarity=0.127 Sum_probs=42.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechh---HHH----hhhhhh-----hhhHHHHHHHHHhcCCcEEEE
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTD---FVE----MFVGVA-----ASRVKDLFASARSFAPSIIFI 404 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sd---f~~----~~vG~~-----~~~vr~lF~~A~~~aP~ILfI 404 (845)
+-.+++||+|+|||+.+-.++..+ |..++.+...- ..+ ...|.. .....++++.+.. ...+|+|
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~-~~dvViI 87 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEE-DTEVIAI 87 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCT-TCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhc-cCCEEEE
Confidence 467899999999999988887665 66666654221 000 011211 1112356655442 3479999
Q ss_pred cccchh
Q 043051 405 DEIDAI 410 (845)
Q Consensus 405 DEIDaL 410 (845)
||+.-+
T Consensus 88 DEaqfl 93 (191)
T 1xx6_A 88 DEVQFF 93 (191)
T ss_dssp CSGGGS
T ss_pred ECCCCC
Confidence 999887
No 271
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.85 E-value=0.071 Score=65.68 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHH
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAG 361 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~ 361 (845)
...-++|+||.|+||||+.|.++.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHH
Confidence 345689999999999999999874
No 272
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=94.78 E-value=0.05 Score=67.64 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=33.4
Q ss_pred cccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 043051 309 AGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 309 vG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~e 362 (845)
+|.+...+.|.+.+.... ..+-+.|+||.|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~d-----------~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLELR-----------PAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHCC-----------SSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhccC-----------CCeEEEEEcCCCccHHHHHHHHHHh
Confidence 899988887777654211 1456899999999999999999863
No 273
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.75 E-value=0.019 Score=61.56 Aligned_cols=29 Identities=28% Similarity=0.513 Sum_probs=24.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 043051 336 IYCPKGVLLHGPPGTGKTLLAKAIAGEAG 364 (845)
Q Consensus 336 ~~~PrgVLL~GPPGTGKT~LArALA~elg 364 (845)
...|.-+.|.||+|+||||||+.|++.++
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34566788999999999999999998775
No 274
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.70 E-value=0.071 Score=60.05 Aligned_cols=93 Identities=15% Similarity=0.238 Sum_probs=51.4
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC---CeEEeech-hHH-
Q 043051 302 GVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGV---PFFAANGT-DFV- 376 (845)
Q Consensus 302 ~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~elg~---pfi~vs~s-df~- 376 (845)
..+++++.-....+..|..++ ..+ ..-++|.||+|+||||+.+++++.... .++.+.-. ++.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~---~~~----------ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~ 209 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLI---KRP----------HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDI 209 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHH---TSS----------SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCC
T ss_pred CCCHHHcCCCHHHHHHHHHHH---Hhc----------CCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhcc
Confidence 567777765554444444441 111 124789999999999999999998742 23322111 100
Q ss_pred ----Hhhhh-hhhhhHHHHHHHHHhcCCcEEEEccc
Q 043051 377 ----EMFVG-VAASRVKDLFASARSFAPSIIFIDEI 407 (845)
Q Consensus 377 ----~~~vG-~~~~~vr~lF~~A~~~aP~ILfIDEI 407 (845)
...++ ...-.....+..+....|.++++.|+
T Consensus 210 ~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 210 DGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp SSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred CCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 00000 00112234444555568999999985
No 275
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.65 E-value=0.017 Score=58.84 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=16.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHH-Hhc
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIA-GEA 363 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA-~el 363 (845)
.+.-+.|.||+|+|||||++.|+ +..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34568899999999999999999 765
No 276
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.59 E-value=0.018 Score=64.60 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=28.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeEEeec
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFFAANG 372 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi~vs~ 372 (845)
++-++|.||+|+|||+||..||..++..++..+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 4568899999999999999999999877655443
No 277
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.58 E-value=0.078 Score=60.92 Aligned_cols=28 Identities=29% Similarity=0.291 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 043051 336 IYCPKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 336 ~~~PrgVLL~GPPGTGKT~LArALA~el 363 (845)
...+.-+.|.||+|+|||||++.||+.+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 4456678999999999999999999865
No 278
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.57 E-value=0.12 Score=52.72 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=17.7
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 043051 340 KGVLLHGPPGTGKTLLAKAIA 360 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA 360 (845)
+.+++.||+|||||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 579999999999998776653
No 279
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=94.56 E-value=0.099 Score=53.00 Aligned_cols=54 Identities=31% Similarity=0.285 Sum_probs=33.0
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCC---CCCceEEEEcCCCChHHHHHH
Q 043051 302 GVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGI---YCPKGVLLHGPPGTGKTLLAK 357 (845)
Q Consensus 302 ~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~---~~PrgVLL~GPPGTGKT~LAr 357 (845)
..+|+++.-.+.+.+.|.+. ....+..++.... ...+.+++.+|+|+|||+.+-
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEA--QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHT--TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 45688887777766666542 1223333332211 113679999999999998643
No 280
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=94.56 E-value=0.12 Score=51.92 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=16.0
Q ss_pred ceEEEEcCCCChHHHHHHH
Q 043051 340 KGVLLHGPPGTGKTLLAKA 358 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArA 358 (845)
+.+++.+|+|+|||+.+-.
T Consensus 42 ~~~lv~a~TGsGKT~~~~~ 60 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYLL 60 (219)
T ss_dssp CCEEEECCSSHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 5799999999999986443
No 281
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.52 E-value=0.27 Score=52.51 Aligned_cols=35 Identities=26% Similarity=0.136 Sum_probs=27.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeec
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANG 372 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~ 372 (845)
.++.+.++|++|+|||++++.+|..+ +..+..+++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 46678899999999999999998765 555555544
No 282
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=94.46 E-value=0.14 Score=50.54 Aligned_cols=18 Identities=28% Similarity=0.350 Sum_probs=15.6
Q ss_pred ceEEEEcCCCChHHHHHH
Q 043051 340 KGVLLHGPPGTGKTLLAK 357 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LAr 357 (845)
+.+++.+|+|+|||+.+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 679999999999997554
No 283
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.46 E-value=0.071 Score=57.85 Aligned_cols=37 Identities=27% Similarity=0.197 Sum_probs=29.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeec
Q 043051 336 IYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANG 372 (845)
Q Consensus 336 ~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~ 372 (845)
...|+-++++||+|+|||+++..+|..+ +..+..+++
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4567789999999999999999998765 556665554
No 284
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.41 E-value=0.075 Score=58.81 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=21.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
..-+-|.||+|+|||||.|.+++-.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3458899999999999999999854
No 285
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=94.24 E-value=0.06 Score=54.33 Aligned_cols=56 Identities=16% Similarity=0.161 Sum_probs=31.4
Q ss_pred CCCCCcccccc-cHHHHHHHHHHHHHhhCcHHHhhcCC---CCCceEEEEcCCCChHHHHHH
Q 043051 300 TTGVTFDDFAG-QEYIKRELQEIVRILKNDEEFQNKGI---YCPKGVLLHGPPGTGKTLLAK 357 (845)
Q Consensus 300 ~~~~tF~dVvG-~de~k~eL~eiv~~Lk~p~~~~~~g~---~~PrgVLL~GPPGTGKT~LAr 357 (845)
.+..+|+|..+ ...+.+.|.+. .+..+..++...+ ...+.+++.+|+|+|||+.+-
T Consensus 16 ~p~~~f~~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 16 KPTCRFKDAFQQYPDLLKSIIRV--GILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCCCSHHHHHTTCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CChhhHhhhhccCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 34567887544 44444444332 1233333333211 123679999999999998654
No 286
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.24 E-value=0.024 Score=57.67 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el 363 (845)
.+.-+.|.||+|+|||||++.|++..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34568899999999999999999976
No 287
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.15 E-value=0.026 Score=58.58 Aligned_cols=30 Identities=33% Similarity=0.592 Sum_probs=26.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAA 370 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~v 370 (845)
-+-|.||||+||||+|+.|+..++++++..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 367899999999999999999999887743
No 288
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.14 E-value=0.13 Score=63.60 Aligned_cols=23 Identities=17% Similarity=0.197 Sum_probs=20.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAG 361 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~ 361 (845)
..-++|+||.|+|||++.|.+|.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999953
No 289
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.14 E-value=0.12 Score=58.42 Aligned_cols=71 Identities=18% Similarity=0.217 Sum_probs=46.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc----CCCeEEeechhHHH----h---h---hh---------hh-hhhHHHHHH
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIAGEA----GVPFFAANGTDFVE----M---F---VG---------VA-ASRVKDLFA 392 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA~el----g~pfi~vs~sdf~~----~---~---vG---------~~-~~~vr~lF~ 392 (845)
..|+.++++|++|+||||++-.+|..+ |..+..+++.-+.. . + .| .. ...++..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 457889999999999999999998654 67777776653211 0 0 01 01 122255666
Q ss_pred HHHhcCCcEEEEccc
Q 043051 393 SARSFAPSIIFIDEI 407 (845)
Q Consensus 393 ~A~~~aP~ILfIDEI 407 (845)
.++...-.+++||=.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 666445579999864
No 290
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.13 E-value=0.039 Score=62.43 Aligned_cols=36 Identities=28% Similarity=0.255 Sum_probs=28.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeech
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGT 373 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~s 373 (845)
.|+.++++|+||+|||+++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 46789999999999999999998865 4566666553
No 291
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.11 E-value=0.056 Score=58.17 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 043051 336 IYCPKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 336 ~~~PrgVLL~GPPGTGKT~LArALA~el 363 (845)
...+.-+.|.||+|+||||+++.+|+.+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4556778999999999999999999875
No 292
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.09 E-value=0.061 Score=62.05 Aligned_cols=36 Identities=19% Similarity=0.112 Sum_probs=28.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeec
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANG 372 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~ 372 (845)
..|+.|+|+|+||+||||++..||..+ |..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 347789999999999999999998655 666666665
No 293
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.07 E-value=0.03 Score=57.82 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=24.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCC
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVP 366 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~p 366 (845)
+.-+-|.||+|+|||||++.+++.+|..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 3457899999999999999999988754
No 294
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.03 E-value=0.035 Score=54.00 Aligned_cols=27 Identities=30% Similarity=0.324 Sum_probs=23.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA~el 363 (845)
....-+.|.||.|+|||+|+|++++.+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 334458899999999999999999987
No 295
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.02 E-value=0.094 Score=57.14 Aligned_cols=27 Identities=26% Similarity=0.259 Sum_probs=23.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA~el 363 (845)
..|.-+.|.||+|+||||+++.+|+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999865
No 296
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=94.01 E-value=0.23 Score=53.56 Aligned_cols=57 Identities=23% Similarity=0.229 Sum_probs=34.1
Q ss_pred CCcccccccHHHHHHHHHHHHHhhCcHHHhhcCC---CCCceEEEEcCCCChHHHHHHHHHH
Q 043051 303 VTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGI---YCPKGVLLHGPPGTGKTLLAKAIAG 361 (845)
Q Consensus 303 ~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~---~~PrgVLL~GPPGTGKT~LArALA~ 361 (845)
.+|+++.-.+.+.+.|.+. -+..+..++...+ ...+.+++.+|+|+|||+.+-..+-
T Consensus 8 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHH--SCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHH
Confidence 4678876666666666542 1233333333211 1136799999999999987654443
No 297
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.99 E-value=0.031 Score=56.08 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=22.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAG 364 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg 364 (845)
..-+.|.||+|+|||||+++|++...
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 44588999999999999999999863
No 298
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.98 E-value=0.11 Score=58.97 Aligned_cols=38 Identities=26% Similarity=0.403 Sum_probs=29.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC---CCeEEeechhHH
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAG---VPFFAANGTDFV 376 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg---~pfi~vs~sdf~ 376 (845)
|.-|+|+|.||+|||++++.++..++ .+...++..++.
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r 79 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYR 79 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhh
Confidence 56799999999999999999998864 455555544443
No 299
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.98 E-value=0.069 Score=63.23 Aligned_cols=59 Identities=25% Similarity=0.359 Sum_probs=35.2
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechh
Q 043051 302 GVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTD 374 (845)
Q Consensus 302 ~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sd 374 (845)
+..|-+---.+..++.+..++. .. .-.||.||||||||+++-.+...+ +.++..+..+.
T Consensus 182 ~~~~~~~~LN~~Q~~AV~~al~---~~-----------~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN 243 (646)
T 4b3f_X 182 PLTFFNTCLDTSQKEAVLFALS---QK-----------ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSN 243 (646)
T ss_dssp CCCCSSTTCCHHHHHHHHHHHH---CS-----------SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred cccccCCCCCHHHHHHHHHHhc---CC-----------CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCch
Confidence 3444333345666666655442 11 136899999999998766554433 66666666543
No 300
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.95 E-value=0.03 Score=57.74 Aligned_cols=30 Identities=23% Similarity=0.471 Sum_probs=27.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAGVPFFA 369 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg~pfi~ 369 (845)
.-|.|.|++|||||++|+.||..+|.+|+.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 468899999999999999999999999864
No 301
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.95 E-value=0.22 Score=54.45 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=25.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeEEee
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAAN 371 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs 371 (845)
+.-|.|+|+||+|||+|+.+++..+ |..+..++
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 4568999999999999999998765 54544443
No 302
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.93 E-value=0.13 Score=52.78 Aligned_cols=69 Identities=19% Similarity=0.105 Sum_probs=39.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhH-------HHhhhhhh-----hhhHHHHHHHHHhcCCcEEEEc
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDF-------VEMFVGVA-----ASRVKDLFASARSFAPSIIFID 405 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf-------~~~~vG~~-----~~~vr~lF~~A~~~aP~ILfID 405 (845)
-.+++||.|+|||+.+-.++..+ |..++.+...-- +....|.. .....++++.+.. ...+|+||
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~~-~~dvViID 108 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHITE-EMDVIAID 108 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSSGGGGGGGCCS-SCCEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHHhc-CCCEEEEE
Confidence 35689999999999888886544 777766653210 00011111 0111233433332 24699999
Q ss_pred ccchh
Q 043051 406 EIDAI 410 (845)
Q Consensus 406 EIDaL 410 (845)
|+.-|
T Consensus 109 EaQF~ 113 (214)
T 2j9r_A 109 EVQFF 113 (214)
T ss_dssp CGGGS
T ss_pred CcccC
Confidence 99987
No 303
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.89 E-value=0.014 Score=58.10 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAG 364 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg 364 (845)
-|.|.|++|+||||+++.|+..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999874
No 304
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=93.76 E-value=0.16 Score=51.94 Aligned_cols=55 Identities=15% Similarity=0.112 Sum_probs=32.1
Q ss_pred CCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCC---CCCceEEEEcCCCChHHHHHH
Q 043051 301 TGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGI---YCPKGVLLHGPPGTGKTLLAK 357 (845)
Q Consensus 301 ~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~---~~PrgVLL~GPPGTGKT~LAr 357 (845)
+..+|+++.-.+.+.+.+.+. .+..+..++...+ ...+.+++.+|+|+|||+.+-
T Consensus 27 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVIARQ--NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCSSTTTTTCCHHHHHHHHTT--TCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHH
T ss_pred ccCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHH
Confidence 456777776666665555431 1222333322211 113679999999999998754
No 305
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=93.73 E-value=0.21 Score=60.73 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~e 362 (845)
..-++|+||.|+|||++.|.+++.
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 456899999999999999999874
No 306
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=93.69 E-value=0.38 Score=51.67 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=17.6
Q ss_pred CceEEEEcCCCChHHHHHHHH
Q 043051 339 PKGVLLHGPPGTGKTLLAKAI 359 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArAL 359 (845)
++.+++.+|+|+|||+.+-..
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 478999999999999876544
No 307
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.68 E-value=0.039 Score=59.62 Aligned_cols=29 Identities=31% Similarity=0.507 Sum_probs=25.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el 363 (845)
.+++..-+.|+||+|+|||||++.|++..
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 44455679999999999999999999987
No 308
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.66 E-value=0.026 Score=60.27 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=26.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC---CCeEEeechhHH
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAG---VPFFAANGTDFV 376 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg---~pfi~vs~sdf~ 376 (845)
+.-|.|.||+|+||||+|+.++..++ ..+..+++.+|.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 34588999999999999999998765 445556665543
No 309
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.61 E-value=0.039 Score=55.17 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=27.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeEEeech
Q 043051 342 VLLHGPPGTGKTLLAKAIAGEAGVPFFAANGT 373 (845)
Q Consensus 342 VLL~GPPGTGKT~LArALA~elg~pfi~vs~s 373 (845)
+|++|++|+|||++|..++.. +.|.+++..+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~ 32 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATS 32 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecC
Confidence 689999999999999999988 8888887764
No 310
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=93.59 E-value=0.2 Score=54.47 Aligned_cols=58 Identities=24% Similarity=0.268 Sum_probs=34.4
Q ss_pred CCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCC---CCceEEEEcCCCChHHHHHHHHH
Q 043051 301 TGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIY---CPKGVLLHGPPGTGKTLLAKAIA 360 (845)
Q Consensus 301 ~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~---~PrgVLL~GPPGTGKT~LArALA 360 (845)
...+|+++.-.+.+.+.|.+. -+..+..++...+. ..+.+++.+|+|+|||+.+-..+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEA--GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHH
Confidence 356799987777776666542 12223333322111 13579999999999998665443
No 311
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.56 E-value=0.044 Score=64.19 Aligned_cols=38 Identities=18% Similarity=0.157 Sum_probs=32.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcC----CCeEEeechhH
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEAG----VPFFAANGTDF 375 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~elg----~pfi~vs~sdf 375 (845)
.+.-|+|.|+||+|||++|++|+..++ .+++.+++..+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 356789999999999999999999875 78888886543
No 312
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.56 E-value=0.18 Score=57.59 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el 363 (845)
.-++|+||||+|||+|+..++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 358999999999999999987654
No 313
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.53 E-value=0.082 Score=58.17 Aligned_cols=70 Identities=23% Similarity=0.344 Sum_probs=44.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC--CCeEEeech-hHH--------------Hhhhhh-hhhhHHHHHHHHHhcCCc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAG--VPFFAANGT-DFV--------------EMFVGV-AASRVKDLFASARSFAPS 400 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg--~pfi~vs~s-df~--------------~~~vG~-~~~~vr~lF~~A~~~aP~ 400 (845)
...++|.||+|+|||||++++++... .-.+.+.+. ++. ....|. ....+++.+..+....|.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd 254 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPT 254 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCC
Confidence 45799999999999999999998763 223333321 110 000111 223466777777777899
Q ss_pred EEEEcccc
Q 043051 401 IIFIDEID 408 (845)
Q Consensus 401 ILfIDEID 408 (845)
.++++|+.
T Consensus 255 ~~l~~e~r 262 (361)
T 2gza_A 255 RILLAELR 262 (361)
T ss_dssp EEEESCCC
T ss_pred EEEEcCch
Confidence 99999864
No 314
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.47 E-value=0.046 Score=56.21 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=26.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC--CCeEEe
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAG--VPFFAA 370 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg--~pfi~v 370 (845)
+.-+.|.||||+||||+++.+++.++ .+++..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 45688999999999999999999886 455433
No 315
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.47 E-value=0.075 Score=58.67 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=25.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~el 363 (845)
....|.-+.|.||+|+||||+++.||+.+
T Consensus 153 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 153 GFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp CSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 34557779999999999999999999875
No 316
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.33 E-value=0.1 Score=55.88 Aligned_cols=71 Identities=27% Similarity=0.243 Sum_probs=44.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHH----H---hh---hhh---------hh-hhHHHHHHHHH
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFV----E---MF---VGV---------AA-SRVKDLFASAR 395 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~----~---~~---vG~---------~~-~~vr~lF~~A~ 395 (845)
+.-+++.|++|+|||+++..+|..+ |..+..+++.-+. + .+ .|. .. ..++..++.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 6778899999999999999998765 5666666553111 0 00 010 11 12245666665
Q ss_pred hcCCcEEEEcccch
Q 043051 396 SFAPSIIFIDEIDA 409 (845)
Q Consensus 396 ~~aP~ILfIDEIDa 409 (845)
.....+|+||=.-.
T Consensus 178 ~~~~D~ViIDTpg~ 191 (297)
T 1j8m_F 178 SEKMEIIIVDTAGR 191 (297)
T ss_dssp HTTCSEEEEECCCS
T ss_pred hCCCCEEEEeCCCC
Confidence 44567999997433
No 317
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.32 E-value=0.048 Score=55.88 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcC
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEAG 364 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~elg 364 (845)
...-+.|.||+|+|||||.+++++...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 345688999999999999999998764
No 318
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.24 E-value=0.049 Score=58.49 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcC
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEAG 364 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~elg 364 (845)
.+.-+.|.||+|+|||||++.|++.++
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345688999999999999999999765
No 319
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.16 E-value=0.32 Score=57.01 Aligned_cols=28 Identities=32% Similarity=0.390 Sum_probs=23.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 043051 336 IYCPKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 336 ~~~PrgVLL~GPPGTGKT~LArALA~el 363 (845)
+++..-+.|.||+|+|||||++.+++..
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 4445668999999999999999998865
No 320
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.10 E-value=0.26 Score=57.52 Aligned_cols=27 Identities=26% Similarity=0.191 Sum_probs=22.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA~el 363 (845)
++..-+.|.||+|+|||||++.+++..
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 344568899999999999999998865
No 321
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.06 E-value=0.062 Score=53.59 Aligned_cols=29 Identities=31% Similarity=0.502 Sum_probs=24.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeE
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFF 368 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi 368 (845)
.+|+||.|++|+|||++|.++... |..++
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~lv 44 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQLV 44 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEe
Confidence 479999999999999999999874 54443
No 322
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=93.03 E-value=0.21 Score=54.61 Aligned_cols=58 Identities=22% Similarity=0.264 Sum_probs=35.9
Q ss_pred CCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCC---CCCceEEEEcCCCChHHHHHHHHH
Q 043051 301 TGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGI---YCPKGVLLHGPPGTGKTLLAKAIA 360 (845)
Q Consensus 301 ~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~---~~PrgVLL~GPPGTGKT~LArALA 360 (845)
...+|+++.-.+.+.+.|... -+..+..++...+ ...+.+++.+|+|+|||+.+-..+
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAY--GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHH
Confidence 356799987777777666542 1233333333211 113679999999999997765443
No 323
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.01 E-value=0.097 Score=56.92 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcC
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEAG 364 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~elg 364 (845)
.|.-+.|.||+||||||+++.+++.++
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456788999999999999999998865
No 324
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=93.00 E-value=0.25 Score=50.90 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=32.4
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCC---CCCceEEEEcCCCChHHHHHH
Q 043051 302 GVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGI---YCPKGVLLHGPPGTGKTLLAK 357 (845)
Q Consensus 302 ~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~---~~PrgVLL~GPPGTGKT~LAr 357 (845)
..+|+++.-.+.+.+.|.+.- +..+..++...+ ...+.+++.+|+|+|||+.+-
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~g--~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQLG--WTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHTT--CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred cCCHHHcCCCHHHHHHHHHcC--CCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhH
Confidence 456888866666666554321 223333332211 123689999999999998644
No 325
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.94 E-value=0.32 Score=54.81 Aligned_cols=35 Identities=26% Similarity=0.136 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeec
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANG 372 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~ 372 (845)
.|..+++.||+|+||||++..+|..+ +..+..+++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 56788899999999999999998765 555655554
No 326
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=92.77 E-value=0.11 Score=53.16 Aligned_cols=30 Identities=30% Similarity=0.430 Sum_probs=26.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAGVPFFAA 370 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg~pfi~v 370 (845)
-.|-|+|..|||||++++.++. +|.|++..
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vida 39 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDT 39 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEEC
Confidence 3688999999999999999998 89888743
No 327
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.75 E-value=0.35 Score=56.59 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=23.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 043051 336 IYCPKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 336 ~~~PrgVLL~GPPGTGKT~LArALA~el 363 (845)
+++..-+.|.||+|+|||||++.+++..
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3345568999999999999999998865
No 328
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.68 E-value=0.24 Score=56.09 Aligned_cols=24 Identities=38% Similarity=0.392 Sum_probs=20.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~e 362 (845)
-+-.++.|+||||||++.+.++..
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCCT
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcc
Confidence 356789999999999999888753
No 329
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.68 E-value=0.069 Score=54.73 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=23.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAG 364 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg 364 (845)
|+-+.|.|++|+||||+++.|+..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45689999999999999999999983
No 330
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=92.68 E-value=0.26 Score=58.78 Aligned_cols=19 Identities=42% Similarity=0.642 Sum_probs=17.0
Q ss_pred CceEEEEcCCCChHHHHHH
Q 043051 339 PKGVLLHGPPGTGKTLLAK 357 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LAr 357 (845)
.+.+++.||+|+|||+.+-
T Consensus 39 ~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAE 57 (720)
T ss_dssp TCEEEEECCGGGCHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 5789999999999999873
No 331
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.62 E-value=0.069 Score=57.72 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=23.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA~el 363 (845)
..+.-+.|.||+|+|||||++.|++.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 345568899999999999999999876
No 332
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=92.61 E-value=0.24 Score=50.90 Aligned_cols=69 Identities=20% Similarity=0.145 Sum_probs=37.6
Q ss_pred eEEEEcCCCChHHH-HHHHH--HHhcCCCeEEeech-hH------HHhhhhhh-----hhhHHHHHHHHHhcCCcEEEEc
Q 043051 341 GVLLHGPPGTGKTL-LAKAI--AGEAGVPFFAANGT-DF------VEMFVGVA-----ASRVKDLFASARSFAPSIIFID 405 (845)
Q Consensus 341 gVLL~GPPGTGKT~-LArAL--A~elg~pfi~vs~s-df------~~~~vG~~-----~~~vr~lF~~A~~~aP~ILfID 405 (845)
-.+++||.|+|||+ |.+.+ +.+.+..++.+... +- +....|.. .....++++.. .....+|+||
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i-~~~~dvV~ID 108 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHD-LTNVDVIGID 108 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSC-CTTCSEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHH-hcCCCEEEEe
Confidence 46799999999999 55555 33446666555432 10 00111110 01122333322 2246799999
Q ss_pred ccchh
Q 043051 406 EIDAI 410 (845)
Q Consensus 406 EIDaL 410 (845)
|+.-|
T Consensus 109 EaQFf 113 (219)
T 3e2i_A 109 EVQFF 113 (219)
T ss_dssp CGGGS
T ss_pred chhcC
Confidence 99988
No 333
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.58 E-value=0.063 Score=62.61 Aligned_cols=40 Identities=25% Similarity=0.230 Sum_probs=31.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcC----CCeEEeechhHHH
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEAG----VPFFAANGTDFVE 377 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~elg----~pfi~vs~sdf~~ 377 (845)
.+..+.|.|++|+|||||+++||+.++ ..+..+++.++..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~ 411 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR 411 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH
Confidence 345688999999999999999999874 3455577766543
No 334
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.54 E-value=0.073 Score=52.67 Aligned_cols=26 Identities=27% Similarity=0.183 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el 363 (845)
...-+.|.||+|+|||+|++.+++.+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 34568999999999999999998764
No 335
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.50 E-value=0.12 Score=50.26 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=28.9
Q ss_pred cHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 043051 311 QEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 311 ~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el 363 (845)
...+.+.+.+++..+.... ......+++.|++|+|||+|..++.+..
T Consensus 26 ~~~l~~~l~~~~~~~~~~~------~~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 26 ISQWREWIDEKLGGGSGGG------GSYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CHHHHHHHHHHC--------------CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhhcCCC------CCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455555555444332211 1234579999999999999999998754
No 336
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=92.48 E-value=0.6 Score=49.65 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=34.1
Q ss_pred CCCCcccccccHHHHHHHHHHHHHhhCcHHHhhc-----CCCCCceEEEEcCCCChHHHHH
Q 043051 301 TGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNK-----GIYCPKGVLLHGPPGTGKTLLA 356 (845)
Q Consensus 301 ~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~-----g~~~PrgVLL~GPPGTGKT~LA 356 (845)
...+|+++.-.+.+.+.|... .+..|..++.. -...++.+++++|+|||||+..
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~--g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred CcCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 456789887777776666542 12333333321 1113578999999999999764
No 337
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.47 E-value=0.2 Score=58.20 Aligned_cols=38 Identities=26% Similarity=0.265 Sum_probs=31.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhHH
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANGTDFV 376 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sdf~ 376 (845)
+.-++|+|+||+|||++|+.|+..+ |.++..+++..+.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir 412 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVR 412 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhh
Confidence 4678999999999999999999876 4677777766544
No 338
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.44 E-value=0.035 Score=57.83 Aligned_cols=31 Identities=13% Similarity=0.154 Sum_probs=25.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc-CCCeE
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA-GVPFF 368 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el-g~pfi 368 (845)
.++-|.|.|++|+||||+++.|+..+ +..++
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 35678999999999999999999998 54443
No 339
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.43 E-value=0.42 Score=61.26 Aligned_cols=29 Identities=21% Similarity=0.294 Sum_probs=24.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 043051 336 IYCPKGVLLHGPPGTGKTLLAKAIAGEAG 364 (845)
Q Consensus 336 ~~~PrgVLL~GPPGTGKT~LArALA~elg 364 (845)
+++..-+.|+||+|+|||+|++.+.+...
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 34456689999999999999999998763
No 340
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=92.40 E-value=0.18 Score=61.03 Aligned_cols=59 Identities=14% Similarity=-0.100 Sum_probs=33.6
Q ss_pred CCCCcccccccHHHHHHHHHHHHHhhCcHHHhh--c--CCCCCceEEEEcCCCChHHHHHHHHHHh
Q 043051 301 TGVTFDDFAGQEYIKRELQEIVRILKNDEEFQN--K--GIYCPKGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 301 ~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~--~--g~~~PrgVLL~GPPGTGKT~LArALA~e 362 (845)
+..+|+++.-.+...+.+.+.- ..|-..+. + .+.....+++.||+|+|||+++..++.+
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~---~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRR---ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHT---TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCccccCCCHHHHHHHHHhh---cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3456888766666555544321 11110000 0 0111246999999999999987777554
No 341
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.28 E-value=0.4 Score=46.52 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el 363 (845)
--|+|.|++|+|||+|..++.+..
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 359999999999999999998754
No 342
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.20 E-value=0.088 Score=56.70 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el 363 (845)
.+.-+.|.||+|+||||+++.+|+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45678999999999999999999865
No 343
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.96 E-value=0.24 Score=53.90 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=21.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
..-+.|.||||+|||+|.+++++.+
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4458899999999999999998754
No 344
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=91.89 E-value=0.45 Score=56.63 Aligned_cols=56 Identities=23% Similarity=0.304 Sum_probs=31.9
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhCcHHHhhc----CCCCCceEEEEcCCCChHHHHHHHH
Q 043051 302 GVTFDDFAGQEYIKRELQEIVRILKNDEEFQNK----GIYCPKGVLLHGPPGTGKTLLAKAI 359 (845)
Q Consensus 302 ~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~----g~~~PrgVLL~GPPGTGKT~LArAL 359 (845)
+.+|+++.-.+.+++.+... .+..+..++.. +....+.+++.||+|+|||+.+-..
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~--g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~ 66 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKR--GIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMG 66 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTT--SCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHH
T ss_pred cCcHHHcCCCHHHHHHHHhC--CCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHH
Confidence 45677776555555544331 01122222211 1233578999999999999998433
No 345
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=91.84 E-value=1 Score=49.22 Aligned_cols=33 Identities=36% Similarity=0.395 Sum_probs=25.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc----CCCeEEeech
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEA----GVPFFAANGT 373 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~el----g~pfi~vs~s 373 (845)
++++.+|+|+|||+.+-+++... +.+.+.+...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 68999999999999998886654 5566655543
No 346
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.82 E-value=0.057 Score=55.81 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=21.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
..-+.|.||+|+|||||.+.+++-.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4458899999999999999999754
No 347
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=91.82 E-value=0.37 Score=52.54 Aligned_cols=53 Identities=19% Similarity=0.191 Sum_probs=31.3
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCC---CCCceEEEEcCCCChHHHHH
Q 043051 302 GVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGI---YCPKGVLLHGPPGTGKTLLA 356 (845)
Q Consensus 302 ~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~---~~PrgVLL~GPPGTGKT~LA 356 (845)
-.+|+++.-.+.+.+.|... .+..|..++...+ ...+.+++.+|+|+|||+.+
T Consensus 14 ~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 14 IESFSDVEMGEIIMGNIELT--RYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAF 69 (417)
T ss_dssp CSSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred cCCHhhCCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHH
Confidence 44688886666666655431 1223333332211 12367999999999999743
No 348
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=91.82 E-value=0.29 Score=56.82 Aligned_cols=46 Identities=24% Similarity=0.321 Sum_probs=31.5
Q ss_pred ccccHHHHHHHHHHHHHhhCcHHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 043051 308 FAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 308 VvG~de~k~eL~eiv~~Lk~p~~~~~~g~~~PrgVLL~GPPGTGKT~LArALA~el 363 (845)
+...+...+.+..++..+... .+.+||++|+|+|||..|-.++..+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~----------~~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQG----------KKRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTT----------CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhcC----------CCceEEEecCCCChHHHHHHHHHHH
Confidence 445566666676666655431 2568999999999999987776653
No 349
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.80 E-value=0.058 Score=55.86 Aligned_cols=26 Identities=31% Similarity=0.294 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el 363 (845)
...-+.|.||+|+|||||++.+++..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568899999999999999998854
No 350
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.78 E-value=0.098 Score=60.38 Aligned_cols=27 Identities=11% Similarity=0.014 Sum_probs=24.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGV 365 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~ 365 (845)
+..|+|.|.+||||||+|++||..++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999874
No 351
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=91.72 E-value=0.29 Score=54.95 Aligned_cols=36 Identities=28% Similarity=0.287 Sum_probs=29.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEeech-hHH
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFFAANGT-DFV 376 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi~vs~s-df~ 376 (845)
.++|.+|+|+|||..+-.++...+.+.+.+... .+.
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~ 146 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALA 146 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHH
Confidence 589999999999999998888888877777655 443
No 352
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.68 E-value=0.11 Score=50.52 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAG 364 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg 364 (845)
-.+|+||.|+|||++++||+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 568999999999999999988765
No 353
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.60 E-value=1.1 Score=46.58 Aligned_cols=68 Identities=19% Similarity=0.104 Sum_probs=37.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHH---hcCCCeEEeech-------hHHHhhhhhh-----hhhHHHHHHHHHhcCCcEEEE
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAG---EAGVPFFAANGT-------DFVEMFVGVA-----ASRVKDLFASARSFAPSIIFI 404 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~---elg~pfi~vs~s-------df~~~~vG~~-----~~~vr~lF~~A~~~aP~ILfI 404 (845)
+-.+++||.|+|||+.+-..+. ..|..++.+... .+.+. .|.. .....++++.+. ...+|+|
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr-~G~~~~a~~i~~~~di~~~~~--~~dvViI 96 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTH-DRNTMEALPACLLRDVAQEAL--GVAVIGI 96 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHHT--TCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhh-cCCeeEEEecCCHHHHHHHhc--cCCEEEE
Confidence 4578899999999976665544 346666555421 11111 1211 011233455552 3469999
Q ss_pred cccchh
Q 043051 405 DEIDAI 410 (845)
Q Consensus 405 DEIDaL 410 (845)
||+.-+
T Consensus 97 DEaQF~ 102 (234)
T 2orv_A 97 DEGQFF 102 (234)
T ss_dssp SSGGGC
T ss_pred Echhhh
Confidence 999887
No 354
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.60 E-value=0.054 Score=55.57 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=21.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
..-+.|.||+|+|||||.+.+++-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457899999999999999998754
No 355
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.54 E-value=0.11 Score=51.33 Aligned_cols=33 Identities=21% Similarity=0.098 Sum_probs=25.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeEEee
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAAN 371 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs 371 (845)
.+-+.|.|++|+|||+|+..++..+ |..+..+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 3468899999999999999998865 45544444
No 356
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.49 E-value=0.073 Score=55.29 Aligned_cols=24 Identities=38% Similarity=0.642 Sum_probs=21.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el 363 (845)
.-+.|.||+|+|||||.+.+++-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 567899999999999999999864
No 357
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=91.47 E-value=0.68 Score=52.47 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=19.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el 363 (845)
+.+++.+|+|+|||+.+-..+-+.
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~ 46 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHH 46 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHHH
Confidence 469999999999999876665443
No 358
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.46 E-value=0.069 Score=54.26 Aligned_cols=23 Identities=48% Similarity=0.518 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~e 362 (845)
.-+.|.||.|+|||||++.+++.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999875
No 359
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=91.41 E-value=0.45 Score=48.65 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=15.3
Q ss_pred ceEEEEcCCCChHHHHHH
Q 043051 340 KGVLLHGPPGTGKTLLAK 357 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LAr 357 (845)
+.+++.+|+|+|||+.+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 469999999999998644
No 360
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=91.40 E-value=1.6 Score=49.20 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=24.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc--------CCCeEEeech
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA--------GVPFFAANGT 373 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el--------g~pfi~vs~s 373 (845)
+.+++.+|+|+|||+.+-..+-+. +...+.+...
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 61 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQ 61 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 479999999999999877665443 5555555443
No 361
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.23 E-value=0.071 Score=56.07 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
..-+.|.||+|+|||||.+.+++-.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457899999999999999999864
No 362
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=91.16 E-value=0.8 Score=52.55 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=15.6
Q ss_pred CceEEEEcCCCChHHHHH
Q 043051 339 PKGVLLHGPPGTGKTLLA 356 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LA 356 (845)
.+.+++.+|+|+|||+.+
T Consensus 111 ~~~~lv~apTGsGKTl~~ 128 (563)
T 3i5x_A 111 DHDVIARAKTGTGKTFAF 128 (563)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCccHHH
Confidence 468999999999999853
No 363
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.11 E-value=0.072 Score=55.25 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el 363 (845)
...-+.|.||+|+|||||.+.+++-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34458899999999999999998854
No 364
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=91.09 E-value=0.43 Score=49.26 Aligned_cols=24 Identities=29% Similarity=0.607 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~e 362 (845)
+..|+|.|.||+|||+|..++.+.
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 456999999999999999999764
No 365
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.06 E-value=0.11 Score=56.80 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=24.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCC
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVP 366 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~p 366 (845)
..-+.|.||+|+|||||++.|++.....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4568999999999999999999987543
No 366
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.01 E-value=0.12 Score=50.95 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~el 363 (845)
-+.|.||+|+|||+|.+.+++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999863
No 367
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=91.00 E-value=0.48 Score=57.28 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~e 362 (845)
..-++|+||.|+|||++.|.+++-
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 356899999999999999999864
No 368
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.95 E-value=0.11 Score=50.89 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~el 363 (845)
-+.|.||+|+|||+|.+.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999864
No 369
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.95 E-value=0.19 Score=51.11 Aligned_cols=32 Identities=28% Similarity=0.344 Sum_probs=25.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeEEe
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAA 370 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el---g~pfi~v 370 (845)
++-|.|.|++|+||||+++.++..+ |.+++..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 3457889999999999999998876 4565544
No 370
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=90.92 E-value=1.1 Score=50.39 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=33.1
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhCcHHHhhcC-----CCCCceEEEEcCCCChHHHHHH
Q 043051 302 GVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKG-----IYCPKGVLLHGPPGTGKTLLAK 357 (845)
Q Consensus 302 ~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g-----~~~PrgVLL~GPPGTGKT~LAr 357 (845)
..+|+++.-.+.+.+.|... .+..|..++... ...++.+|+.||+|+|||+.+-
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~--g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~ 149 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 149 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHH
T ss_pred cCCHHHcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHH
Confidence 45788887777766666541 122222222211 1235789999999999998743
No 371
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.91 E-value=0.18 Score=50.19 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=22.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAG 364 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg 364 (845)
...++|.|++|+|||+|+..++..+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35689999999999999999998763
No 372
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.86 E-value=0.075 Score=55.63 Aligned_cols=25 Identities=36% Similarity=0.558 Sum_probs=21.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
..-+.|.||.|+|||||.+.+++-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999998854
No 373
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.84 E-value=0.082 Score=55.53 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el 363 (845)
...-+.|.||+|+|||||.+.+++-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34568899999999999999998864
No 374
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.83 E-value=0.095 Score=55.25 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=21.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~e 362 (845)
..-+.|.||.|+|||||.+.+++-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 445889999999999999999985
No 375
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=90.82 E-value=0.81 Score=57.10 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.7
Q ss_pred CceEEEEcCCCChHHHHHHHHH
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIA 360 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA 360 (845)
...++|+||.|+|||++.|.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 3678999999999999999993
No 376
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.79 E-value=0.092 Score=57.98 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el 363 (845)
.-+.|.||+|||||||.|.||+-.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 457899999999999999999854
No 377
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.75 E-value=0.088 Score=54.86 Aligned_cols=24 Identities=42% Similarity=0.663 Sum_probs=21.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~e 362 (845)
..-+.|.||+|+|||||.+.+++-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345889999999999999999985
No 378
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.74 E-value=0.084 Score=55.81 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el 363 (845)
...-+.|.||+|+|||||++.|++..
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34458899999999999999998864
No 379
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.73 E-value=0.084 Score=55.66 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=21.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
..-+.|.||.|+|||||.+.+++-.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 4458899999999999999999864
No 380
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=90.72 E-value=2.5 Score=45.64 Aligned_cols=55 Identities=15% Similarity=0.238 Sum_probs=34.3
Q ss_pred CCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcC-----CCCCceEEEEcCCCChHHHHHH
Q 043051 301 TGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKG-----IYCPKGVLLHGPPGTGKTLLAK 357 (845)
Q Consensus 301 ~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g-----~~~PrgVLL~GPPGTGKT~LAr 357 (845)
...+|+++.-.+.+.+.|.+. ....|..++... ...++.+++.+|+|+|||+.+-
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~ 82 (412)
T 3fht_A 23 SVKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 82 (412)
T ss_dssp CSSCTGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHH
T ss_pred ccCCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHH
Confidence 345788887777777666542 122333333221 1124789999999999998753
No 381
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.71 E-value=0.09 Score=53.71 Aligned_cols=25 Identities=44% Similarity=0.551 Sum_probs=21.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
..-+.|.||.|+|||||.+.+++-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458899999999999999998864
No 382
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.69 E-value=0.098 Score=51.56 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=22.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAG 364 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg 364 (845)
+.+.|.||+|+|||||++.|++.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3588999999999999999998763
No 383
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.63 E-value=0.078 Score=54.51 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=22.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
..-+.|.||.|+|||||.+.+++..
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568899999999999999999865
No 384
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.59 E-value=0.079 Score=55.19 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=21.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
..-+.|.||+|+|||||.+.+++-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4458899999999999999998864
No 385
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=90.59 E-value=0.39 Score=52.26 Aligned_cols=57 Identities=23% Similarity=0.229 Sum_probs=34.0
Q ss_pred CCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCC---CCCceEEEEcCCCChHHHHHHHH
Q 043051 301 TGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGI---YCPKGVLLHGPPGTGKTLLAKAI 359 (845)
Q Consensus 301 ~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~---~~PrgVLL~GPPGTGKT~LArAL 359 (845)
...+|+++.-.+.+.+.|.+. .+..+..++...+ ...+.+++.+|+|+|||+.+-..
T Consensus 38 ~~~~f~~~~l~~~~~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~ 97 (414)
T 3eiq_A 38 IVDSFDDMNLSESLLRGIYAY--GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAIS 97 (414)
T ss_dssp CCCCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHH
T ss_pred hhcCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHH
Confidence 345788887777776666541 1223333332211 11356999999999999875433
No 386
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.58 E-value=0.46 Score=51.65 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
+.-+.|.|+||+|||+++.++++.+
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999998764
No 387
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=90.54 E-value=0.48 Score=49.21 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=15.8
Q ss_pred ceEEEEcCCCChHHHHHHH
Q 043051 340 KGVLLHGPPGTGKTLLAKA 358 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArA 358 (845)
+.+++.+|+|+|||+.+-.
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 4689999999999987543
No 388
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.53 E-value=0.081 Score=54.79 Aligned_cols=25 Identities=44% Similarity=0.452 Sum_probs=21.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
..-+.|.||.|+|||||.+.+++-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999999864
No 389
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.52 E-value=0.13 Score=54.27 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=21.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~el 363 (845)
.+.|.||+|+|||||.+.|++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999865
No 390
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.48 E-value=0.081 Score=56.16 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=21.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
..-+.|.||+|+|||||++.+++-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3458899999999999999998854
No 391
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.34 E-value=0.096 Score=55.14 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=21.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
..-+.|.||.|+|||||.+.+++-.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4458899999999999999998854
No 392
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.32 E-value=0.096 Score=54.96 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=21.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
..-+.|.||.|+|||||.+.+++-.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4458899999999999999998854
No 393
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.22 E-value=0.11 Score=57.24 Aligned_cols=25 Identities=40% Similarity=0.428 Sum_probs=21.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
..-+.|.||+|||||||.|.||+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3457899999999999999999854
No 394
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.20 E-value=0.16 Score=47.21 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~el 363 (845)
.+++.|++|+|||+|+.++.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998753
No 395
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.18 E-value=0.2 Score=51.66 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=22.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc-------CCCeEEe
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA-------GVPFFAA 370 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el-------g~pfi~v 370 (845)
++-|.|.||+|+||||+++.+++.+ |.+++..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 3457889999999999999998876 6665544
No 396
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.17 E-value=0.09 Score=54.94 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=22.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAG 364 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg 364 (845)
..-+.|.||.|+|||||.+.+++...
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34588999999999999999998653
No 397
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=90.14 E-value=0.27 Score=50.33 Aligned_cols=29 Identities=24% Similarity=0.203 Sum_probs=25.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCe
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPF 367 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pf 367 (845)
++-+.|.|++|+|||++++.++..++.+.
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 45688999999999999999999997643
No 398
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.13 E-value=0.12 Score=57.25 Aligned_cols=24 Identities=42% Similarity=0.565 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el 363 (845)
.-+.|.||+|||||||.|.||+-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 457899999999999999999854
No 399
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.12 E-value=0.1 Score=57.40 Aligned_cols=25 Identities=40% Similarity=0.604 Sum_probs=21.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
..-+.|.||+|||||||.|.||+-.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Confidence 3457899999999999999999854
No 400
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.11 E-value=0.12 Score=57.63 Aligned_cols=24 Identities=42% Similarity=0.652 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el 363 (845)
.-+.|.||+|||||||.|.||+-.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 457899999999999999999854
No 401
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.11 E-value=0.19 Score=49.95 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=22.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
...++|.|++|+|||+|+.++++..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3569999999999999999998864
No 402
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.02 E-value=0.12 Score=57.34 Aligned_cols=25 Identities=40% Similarity=0.554 Sum_probs=21.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
..-+.|.||+|||||||.|.||+-.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3457899999999999999999854
No 403
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.00 E-value=0.16 Score=47.53 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~e 362 (845)
..+++.|++|+|||+|+.++.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 404
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.96 E-value=0.11 Score=57.26 Aligned_cols=25 Identities=44% Similarity=0.590 Sum_probs=21.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
..-+.|.||+|||||||.+.||+-.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3457899999999999999999854
No 405
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.91 E-value=0.097 Score=55.64 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=21.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
..-+.|.||.|+|||||.+.+++..
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3458899999999999999999865
No 406
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=89.90 E-value=0.14 Score=60.37 Aligned_cols=33 Identities=33% Similarity=0.545 Sum_probs=24.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc----CCCeEEeech
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEA----GVPFFAANGT 373 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~el----g~pfi~vs~s 373 (845)
..++.||||||||+++..++..+ +.++..+..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~t 233 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 233 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESS
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 47899999999999888776543 4455555544
No 407
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.86 E-value=0.099 Score=54.71 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
..-+.|.||.|+|||||.+.+++..
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999999864
No 408
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.80 E-value=0.17 Score=46.89 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~el 363 (845)
.+++.|++|+|||+|+.++.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 409
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=89.69 E-value=1.1 Score=51.99 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=16.0
Q ss_pred CceEEEEcCCCChHHHHHH
Q 043051 339 PKGVLLHGPPGTGKTLLAK 357 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LAr 357 (845)
.+.+++.+|+|+|||+.+-
T Consensus 60 ~~dvlv~apTGsGKTl~~~ 78 (579)
T 3sqw_A 60 DHDVIARAKTGTGKTFAFL 78 (579)
T ss_dssp SEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEcCCCcHHHHHHH
Confidence 4689999999999998533
No 410
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=89.67 E-value=0.18 Score=46.88 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el 363 (845)
..|++.|++|+|||+|..++.+..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998643
No 411
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=89.64 E-value=0.58 Score=53.89 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=17.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAG 361 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~ 361 (845)
+.+|+.+|+|+|||+.+...+-
T Consensus 41 ~d~lv~apTGsGKTl~~~lp~l 62 (523)
T 1oyw_A 41 RDCLVVMPTGGGKSLCYQIPAL 62 (523)
T ss_dssp CCEEEECSCHHHHHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHHH
Confidence 4699999999999986554443
No 412
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.58 E-value=0.12 Score=57.23 Aligned_cols=25 Identities=40% Similarity=0.565 Sum_probs=21.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
..-+.|.||+|||||||.|.||+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3457899999999999999999854
No 413
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.46 E-value=0.15 Score=48.53 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~e 362 (845)
-+.|.|+||+|||+|.+++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 414
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=89.46 E-value=0.59 Score=55.45 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=17.9
Q ss_pred CceEEEEcCCCChHHHHHHHH
Q 043051 339 PKGVLLHGPPGTGKTLLAKAI 359 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArAL 359 (845)
..-+.|.||+|+|||||++.+
T Consensus 348 Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 348 GTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp TSEEEEECSTTSSHHHHHTTT
T ss_pred CCEEEEEeeCCCCHHHHHHHH
Confidence 445889999999999999764
No 415
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=89.45 E-value=1.2 Score=52.36 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=18.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAG 361 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~ 361 (845)
+++++.+|+|+|||+.+-..+.
T Consensus 29 ~~~iv~~~TGsGKTl~~~~~i~ 50 (696)
T 2ykg_A 29 KNTIICAPTGCGKTFVSLLICE 50 (696)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEcCCCchHHHHHHHHHH
Confidence 5799999999999998776654
No 416
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.41 E-value=0.1 Score=57.34 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=21.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
..-+.|.||+|||||||.+.||+-.
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3457899999999999999999854
No 417
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.40 E-value=0.21 Score=51.86 Aligned_cols=28 Identities=21% Similarity=0.443 Sum_probs=23.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCC
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA---GVP 366 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el---g~p 366 (845)
++-|.|.|++|+|||++++.++..+ +.+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 4568899999999999999998876 555
No 418
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.39 E-value=0.13 Score=49.99 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=19.4
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 043051 341 GVLLHGPPGTGKTLLAKAIAG 361 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~ 361 (845)
-++|.|++|+|||+|.+.+++
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 419
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.38 E-value=0.2 Score=46.67 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~e 362 (845)
..|++.|++|+|||+|..++.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999875
No 420
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=89.37 E-value=1.2 Score=43.98 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~e 362 (845)
..|+|.|++|+|||+|..++.+.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 421
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=89.37 E-value=0.56 Score=51.24 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=21.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
..-+.|.|+||+|||+|..++++..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3458899999999999999998753
No 422
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.33 E-value=0.2 Score=46.84 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el 363 (845)
..|++.|++|+|||+|..++.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998653
No 423
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=89.27 E-value=0.65 Score=55.23 Aligned_cols=33 Identities=39% Similarity=0.419 Sum_probs=22.4
Q ss_pred ceEEEEcCCCChHHHHHHHH-HHhc--CCCeEEeec
Q 043051 340 KGVLLHGPPGTGKTLLAKAI-AGEA--GVPFFAANG 372 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArAL-A~el--g~pfi~vs~ 372 (845)
+.+++.||+|+|||+.+-.. ...+ +...+++..
T Consensus 41 ~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P 76 (702)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVP 76 (702)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 57999999999999988433 2222 445554443
No 424
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=89.19 E-value=0.15 Score=56.96 Aligned_cols=26 Identities=31% Similarity=0.270 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el 363 (845)
...-+.|.||+|||||||.+.|++-.
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 34568899999999999999999743
No 425
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.15 E-value=0.36 Score=61.88 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el 363 (845)
.-+-|+||+|+|||+|++.+.+-.
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCc
Confidence 347899999999999999998754
No 426
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.14 E-value=0.14 Score=53.94 Aligned_cols=25 Identities=44% Similarity=0.715 Sum_probs=21.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
..-+.|.||+|+|||||.+.+++..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999999865
No 427
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=89.13 E-value=0.21 Score=46.81 Aligned_cols=24 Identities=25% Similarity=0.345 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el 363 (845)
..|++.|++|+|||+|.+++.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998754
No 428
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=89.04 E-value=0.21 Score=46.81 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~e 362 (845)
..|++.|++|+|||+|..++.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 429
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=89.02 E-value=0.82 Score=55.44 Aligned_cols=35 Identities=29% Similarity=0.320 Sum_probs=25.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeEEeec
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGEA---GVPFFAANG 372 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~el---g~pfi~vs~ 372 (845)
.|..+|+.||.|+|||..+-..+-.. |...+.+..
T Consensus 388 ~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaP 425 (780)
T 1gm5_A 388 KPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVP 425 (780)
T ss_dssp SCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECS
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 35789999999999999876554333 555555544
No 430
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=88.98 E-value=0.14 Score=49.55 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=21.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~e 362 (845)
...+++.|++|+|||+|..++.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999764
No 431
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=88.98 E-value=0.39 Score=47.95 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
+.-++|.|++|+|||+|+..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3568888999999999999998875
No 432
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=88.94 E-value=0.22 Score=47.22 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~e 362 (845)
..|++.|++|+|||+|..++.+.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 433
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=88.93 E-value=0.43 Score=48.46 Aligned_cols=42 Identities=17% Similarity=0.159 Sum_probs=31.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcCC-CeEEeechhHH
Q 043051 335 GIYCPKGVLLHGPPGTGKTLLAKAIAGEAGV-PFFAANGTDFV 376 (845)
Q Consensus 335 g~~~PrgVLL~GPPGTGKT~LArALA~elg~-pfi~vs~sdf~ 376 (845)
+..|++-++|+|.||+||+++|+.+...+|. .+..++.++-+
T Consensus 7 ~~~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~i 49 (202)
T 3ch4_B 7 GGAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPL 49 (202)
T ss_dssp BCCCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHH
T ss_pred ccCCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHH
Confidence 3456778999999999999999999887753 24445665543
No 434
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.87 E-value=0.22 Score=46.74 Aligned_cols=23 Identities=30% Similarity=0.247 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~e 362 (845)
..|++.|++|+|||+|.+++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999875
No 435
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=88.84 E-value=1.1 Score=50.01 Aligned_cols=54 Identities=17% Similarity=0.121 Sum_probs=32.8
Q ss_pred CCCCcccccccHHHHHHHHHHHHHhhCcHHHhhcCCC---CCceEEEEcCCCChHHHHH
Q 043051 301 TGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIY---CPKGVLLHGPPGTGKTLLA 356 (845)
Q Consensus 301 ~~~tF~dVvG~de~k~eL~eiv~~Lk~p~~~~~~g~~---~PrgVLL~GPPGTGKT~LA 356 (845)
+-.+|+++.-.+.+.+.|... -...|..++...++ ..+.+++.+|+|+|||+.+
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~~--g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNKS--GYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAF 110 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CcCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHH
Confidence 345788886666666655431 12333333332211 2368999999999999843
No 436
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.81 E-value=0.21 Score=47.09 Aligned_cols=23 Identities=52% Similarity=0.739 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~e 362 (845)
.-|+|.|+||+|||+|.+++.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46899999999999999999754
No 437
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=88.81 E-value=0.29 Score=45.96 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~e 362 (845)
+..|++.|++|+|||+|..++.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999999764
No 438
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=88.77 E-value=0.23 Score=47.13 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=21.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
+..|++.|++|+|||+|..++.+..
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3469999999999999999997743
No 439
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.75 E-value=0.14 Score=54.65 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=21.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
..-+.|.||.|+|||||.+.+++..
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3458899999999999999998864
No 440
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=88.72 E-value=0.24 Score=46.36 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~e 362 (845)
..|++.|++|+|||+|..++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 441
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.71 E-value=0.2 Score=48.27 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~e 362 (845)
.-++|.|++|+|||+|.+++++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 442
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.67 E-value=0.24 Score=50.50 Aligned_cols=29 Identities=28% Similarity=0.326 Sum_probs=23.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeE
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFF 368 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi 368 (845)
+.-+.|.||.|+||||+++.|++. +..+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~-~g~v~ 48 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY-KNDIC 48 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG-TTTEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc-cCCeE
Confidence 445789999999999999999987 43333
No 443
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.63 E-value=0.2 Score=46.93 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~e 362 (845)
.|++.|++|+|||+|..++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 444
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.62 E-value=0.27 Score=50.62 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=22.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAG 364 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg 364 (845)
++-|.|.|++|+|||++++.++..++
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45678889999999999999988654
No 445
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=88.60 E-value=1.5 Score=44.38 Aligned_cols=18 Identities=39% Similarity=0.658 Sum_probs=15.4
Q ss_pred ceEEEEcCCCChHHHHHH
Q 043051 340 KGVLLHGPPGTGKTLLAK 357 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LAr 357 (845)
+.+++.+|+|+|||+.+-
T Consensus 67 ~~~l~~a~TGsGKT~~~~ 84 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAFS 84 (245)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCCcHHHHHH
Confidence 569999999999998643
No 446
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=88.57 E-value=0.24 Score=46.20 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~e 362 (845)
..+++.|++|+|||+|.+++.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999874
No 447
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=88.49 E-value=0.24 Score=47.39 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~e 362 (845)
..|+|.|++|+|||+|+.++.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999874
No 448
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=88.48 E-value=1.1 Score=50.11 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=21.6
Q ss_pred ceEEEEcCCCChHHHHH-HHHHH---hcCCCeEEee
Q 043051 340 KGVLLHGPPGTGKTLLA-KAIAG---EAGVPFFAAN 371 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LA-rALA~---elg~pfi~vs 371 (845)
+.+|+.||+|+|||+.+ -++.. ..+...+.+.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~ 38 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILA 38 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 57999999999999976 44432 2344444443
No 449
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.42 E-value=0.26 Score=46.70 Aligned_cols=24 Identities=38% Similarity=0.414 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~e 362 (845)
+.-|++.|++|+|||+|..++.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999763
No 450
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=88.38 E-value=0.26 Score=46.10 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~e 362 (845)
.+++.|++|+|||+|..++.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999764
No 451
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=88.34 E-value=1.2 Score=45.57 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=21.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
+..|+|.|++|+|||+|..++.+.-
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999998643
No 452
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=88.32 E-value=0.12 Score=50.99 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=21.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHh
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~e 362 (845)
...-+.|.|++|+|||+|.+++++.
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3456899999999999999998754
No 453
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=88.23 E-value=0.25 Score=46.65 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~e 362 (845)
.-|++.|++|+|||+|..++.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
No 454
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=88.22 E-value=0.25 Score=46.43 Aligned_cols=21 Identities=43% Similarity=0.702 Sum_probs=19.0
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 043051 341 GVLLHGPPGTGKTLLAKAIAG 361 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~ 361 (845)
-+++.|+||+|||+|..++.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999964
No 455
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=88.22 E-value=0.14 Score=55.16 Aligned_cols=28 Identities=21% Similarity=0.352 Sum_probs=23.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 043051 336 IYCPKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 336 ~~~PrgVLL~GPPGTGKT~LArALA~el 363 (845)
+++..-+.|.||+|+|||||++.|++..
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 3345568999999999999999998854
No 456
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.21 E-value=0.29 Score=47.73 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~e 362 (845)
...|+|.|++|+|||+|+.++.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999999875
No 457
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=88.19 E-value=0.24 Score=47.01 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~e 362 (845)
.-|++.|++|+|||+|..++.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999753
No 458
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=88.18 E-value=0.31 Score=52.81 Aligned_cols=29 Identities=31% Similarity=0.462 Sum_probs=24.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeE
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFF 368 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi 368 (845)
.+|++|.|++|+|||++|.++.+. |..++
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 468999999999999999999875 54443
No 459
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=88.15 E-value=0.46 Score=48.61 Aligned_cols=33 Identities=24% Similarity=0.245 Sum_probs=26.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc--CCCeEEee
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA--GVPFFAAN 371 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el--g~pfi~vs 371 (845)
+..+++.|.+|+|||+++..+|..+ |..+..++
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 4678899999999999999998665 54555454
No 460
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.13 E-value=0.24 Score=46.47 Aligned_cols=21 Identities=52% Similarity=0.888 Sum_probs=19.0
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 043051 341 GVLLHGPPGTGKTLLAKAIAG 361 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~ 361 (845)
-++|.|+||+|||+|.+++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999999964
No 461
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=88.12 E-value=2.9 Score=50.47 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=24.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc--------CCCeEEeec
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA--------GVPFFAANG 372 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el--------g~pfi~vs~ 372 (845)
+.+++.+|+|+|||..+-..+-.. +.+.+.+..
T Consensus 264 ~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~P 304 (797)
T 4a2q_A 264 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 304 (797)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeC
Confidence 579999999999999877665544 555555544
No 462
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=88.09 E-value=0.27 Score=53.17 Aligned_cols=30 Identities=33% Similarity=0.437 Sum_probs=24.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEAGVPFFA 369 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~elg~pfi~ 369 (845)
.+|+||.|++|+|||++|-++.. .|..++.
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv~ 176 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFVG 176 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEEe
Confidence 47999999999999999999865 4555543
No 463
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=88.06 E-value=0.95 Score=56.18 Aligned_cols=39 Identities=26% Similarity=0.271 Sum_probs=27.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CC--CeEEeechhHHH
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA---GV--PFFAANGTDFVE 377 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el---g~--pfi~vs~sdf~~ 377 (845)
+.++||.++.|+|||..|-+++.++ +. +++.+....++.
T Consensus 170 ~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~sLl~ 213 (968)
T 3dmq_A 170 APRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQH 213 (968)
T ss_dssp SCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCTTTHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCHHHHH
Confidence 4579999999999999998887654 32 555555445544
No 464
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=88.05 E-value=0.23 Score=56.52 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=22.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc
Q 043051 337 YCPKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 337 ~~PrgVLL~GPPGTGKT~LArALA~el 363 (845)
....-+.|.||.|+|||||+|.|++.+
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 334558999999999999999999864
No 465
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.03 E-value=0.29 Score=48.04 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~e 362 (845)
..-|+|.|++|+|||+|..++.+.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999999864
No 466
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=88.00 E-value=0.28 Score=46.39 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el 363 (845)
..|++.|++|+|||+|.+++.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998753
No 467
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=87.96 E-value=0.27 Score=46.97 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el 363 (845)
.-|++.|++|+|||+|..++.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 458999999999999999998754
No 468
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=87.92 E-value=0.27 Score=46.55 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=21.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~e 362 (845)
..|++.|++|+|||+|.+++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999875
No 469
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=87.90 E-value=0.28 Score=47.20 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el 363 (845)
.-|+|.|++|+|||+|++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 458999999999999999887754
No 470
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=87.87 E-value=0.28 Score=47.32 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el 363 (845)
..|++.|++|+|||+|+.++++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
No 471
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=87.85 E-value=0.27 Score=47.40 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~e 362 (845)
.-+++.|++|+|||+|++.+.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 472
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=87.84 E-value=0.26 Score=47.45 Aligned_cols=23 Identities=39% Similarity=0.673 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~e 362 (845)
.-+.|.|+||+|||+|.+++++.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999875
No 473
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=87.81 E-value=0.33 Score=46.65 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=21.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~e 362 (845)
+.-|++.|++|+|||+|..++.+.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999999875
No 474
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=87.78 E-value=0.29 Score=46.62 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el 363 (845)
..|+|.|++|+|||+|.+++.+..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 469999999999999999998743
No 475
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=87.75 E-value=0.29 Score=47.47 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el 363 (845)
..|+|.|++|+|||+|..++.+.-
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 469999999999999999998743
No 476
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=87.65 E-value=0.25 Score=60.16 Aligned_cols=32 Identities=34% Similarity=0.547 Sum_probs=23.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc----CCCeEEeec
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEA----GVPFFAANG 372 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~el----g~pfi~vs~ 372 (845)
..+|.||||||||+++..++..+ +..+..+..
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~ 408 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAP 408 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEES
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcC
Confidence 47899999999999888776543 345544443
No 477
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=87.57 E-value=0.3 Score=46.46 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~e 362 (845)
..|++.|++|+|||+|..++.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 478
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=87.57 E-value=0.29 Score=46.83 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el 363 (845)
.-|++.|++|+|||+|.+++.+..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998643
No 479
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=87.50 E-value=0.32 Score=53.52 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=16.3
Q ss_pred ceEEEEcCCCChHHHHHHHH
Q 043051 340 KGVLLHGPPGTGKTLLAKAI 359 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArAL 359 (845)
+.+++.+|+|+|||+.+-..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 57999999999999954444
No 480
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=87.36 E-value=0.34 Score=47.43 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=21.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~e 362 (845)
...|+|.|++|+|||+|+.++.+.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 457999999999999999999764
No 481
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=87.31 E-value=0.23 Score=51.71 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=24.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeE
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEAGVPFF 368 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~elg~pfi 368 (845)
-+.|+|++|||||++|+.++..+|.+.+
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~~ 30 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYSAVKY 30 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 3779999999999999999998887763
No 482
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=87.20 E-value=0.29 Score=46.35 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAG 361 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~ 361 (845)
..|++.|++|+|||+|..++.+
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999965
No 483
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.11 E-value=0.33 Score=46.05 Aligned_cols=25 Identities=36% Similarity=0.409 Sum_probs=21.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~el 363 (845)
+..|+|.|++|+|||+|..++.+..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3469999999999999999998743
No 484
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=87.07 E-value=0.52 Score=51.85 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=20.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~e 362 (845)
..++++.||+|+|||++++.++..
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999998754
No 485
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=87.01 E-value=0.35 Score=49.23 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el 363 (845)
+-|.|.|++|+||||+++.++..+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 457889999999999999998876
No 486
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=86.99 E-value=0.34 Score=46.32 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~e 362 (845)
..|+|.|++|+|||+|..++.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999865
No 487
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=86.95 E-value=0.43 Score=46.66 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 043051 339 PKGVLLHGPPGTGKTLLAKAIAG 361 (845)
Q Consensus 339 PrgVLL~GPPGTGKT~LArALA~ 361 (845)
..-|++.|++|+|||+|...+.+
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 45699999999999999999964
No 488
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=86.92 E-value=0.34 Score=46.83 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el 363 (845)
..|+|.|++|+|||+|..++.+.-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998753
No 489
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=86.89 E-value=0.33 Score=47.37 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~e 362 (845)
.-|++.|++|+|||+|.+++.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 490
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=86.87 E-value=0.26 Score=47.26 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=19.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~e 362 (845)
.|++.|++|+|||+|..++.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4899999999999999999764
No 491
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=86.85 E-value=3.5 Score=50.92 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=25.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc--------CCCeEEeec
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA--------GVPFFAANG 372 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el--------g~pfi~vs~ 372 (845)
+.+++.+|+|+|||+.+-..+... +.+.+.+..
T Consensus 264 ~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~P 304 (936)
T 4a2w_A 264 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 304 (936)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECS
T ss_pred CCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeC
Confidence 579999999999999887776655 555665554
No 492
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.72 E-value=0.35 Score=46.10 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHH
Q 043051 338 CPKGVLLHGPPGTGKTLLAKAIAG 361 (845)
Q Consensus 338 ~PrgVLL~GPPGTGKT~LArALA~ 361 (845)
.+..|++.|++|+|||+|..++.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 356799999999999999999863
No 493
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=86.68 E-value=0.36 Score=46.61 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el 363 (845)
.-|+|.|++|+|||+|..++.+..
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998743
No 494
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=86.63 E-value=0.47 Score=51.93 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=22.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCC
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAGV 365 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg~ 365 (845)
.-+.|.||+|+|||+|.+.|++....
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 34889999999999999999998653
No 495
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=86.59 E-value=0.46 Score=51.07 Aligned_cols=23 Identities=43% Similarity=0.499 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 043051 341 GVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 341 gVLL~GPPGTGKT~LArALA~el 363 (845)
-++|+|+.|+|||||.+.+++..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 47899999999999999999764
No 496
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=86.58 E-value=0.32 Score=50.72 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~e 362 (845)
..+.|.|+||+|||+|..++.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999764
No 497
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=86.58 E-value=0.36 Score=45.99 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGE 362 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~e 362 (845)
..|++.|++|+|||+|..++.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 498
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=86.55 E-value=0.37 Score=46.96 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEA 363 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~el 363 (845)
..|+|.|++|+|||+|..++.+..
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 469999999999999999998643
No 499
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=86.49 E-value=0.51 Score=53.27 Aligned_cols=129 Identities=21% Similarity=0.253 Sum_probs=99.2
Q ss_pred CcEEEEcccchhccCCCCCCCCCCchHHHHHHHHHHHhhcCCcccCCcEEEEEE---------cC---CCCCCChhhhcc
Q 043051 399 PSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGA---------TN---RLDILDPALLRK 466 (845)
Q Consensus 399 P~ILfIDEIDaL~~~R~~~~~~~~~~e~~~~L~qLL~emdg~~~~~~~ViVIaa---------TN---~pd~LDpALlRp 466 (845)
|.|+||||+|.+ +.+..+.|+..+++ .+.+++|+++ |+ .+..|+|.+++
T Consensus 296 ~~VliIDEa~~l------------~~~a~~aLlk~lEe------~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s- 356 (456)
T 2c9o_A 296 PGVLFVDEVHML------------DIECFTYLHRALES------SIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLD- 356 (456)
T ss_dssp ECEEEEESGGGC------------BHHHHHHHHHHTTS------TTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHT-
T ss_pred ceEEEEechhhc------------CHHHHHHHHHHhhc------cCCCEEEEecCCccccccccccccccccCChhHHh-
Confidence 579999999999 34455555554433 2344544455 32 27789999999
Q ss_pred CcccEEEEeCCCCHhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHc-cCCcHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 043051 467 GRFDKIVRVGLPSKDGRFAILKVHARNKYFRSEEEKDVLLQEIAELT-EDFTGAELQNILNEAGILTARKDLDYIGQEEL 545 (845)
Q Consensus 467 gRFdr~I~v~~Pd~eeR~eIL~~~l~~~~l~~~~~~d~dl~~LA~~t-~GfSgaDL~~LvneAal~A~r~~~~~It~edl 545 (845)
||.. +.|++|+.++..++|+..+...+... ++..+..+++.+ .| +++...++++.|...|..++...|+.+|+
T Consensus 357 -R~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~---~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~~v~~~~v 430 (456)
T 2c9o_A 357 -RVMI-IRTMLYTPQEMKQIIKIRAQTEGINI---SEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKDSIEKEHV 430 (456)
T ss_dssp -TEEE-EECCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCSSBCHHHH
T ss_pred -hcce-eeCCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCCccCHHHH
Confidence 7765 69999999999999998886555443 345677788877 66 89999999999999999999999999999
Q ss_pred HHHHHhc
Q 043051 546 LEALKRQ 552 (845)
Q Consensus 546 ~~Al~r~ 552 (845)
.+++.-.
T Consensus 431 ~~~~~~~ 437 (456)
T 2c9o_A 431 EEISELF 437 (456)
T ss_dssp HHHHHHS
T ss_pred HHHHHHh
Confidence 9998876
No 500
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=86.48 E-value=0.6 Score=52.78 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=23.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCC
Q 043051 340 KGVLLHGPPGTGKTLLAKAIAGEAGVP 366 (845)
Q Consensus 340 rgVLL~GPPGTGKT~LArALA~elg~p 366 (845)
.-+.|.||+|||||+|++.|++.....
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 348899999999999999999987543
Done!