Query 043054
Match_columns 90
No_of_seqs 108 out of 232
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 21:48:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043054.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043054hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a17_H RPL10, 60S ribosomal pr 100.0 1.4E-31 4.9E-36 202.3 6.5 76 5-80 135-210 (215)
2 3j0l_J Ribosomal protein L10; 100.0 2.9E-31 9.9E-36 201.1 1.7 77 5-81 133-209 (219)
3 3iz5_I 60S ribosomal protein L 100.0 5.7E-33 2E-37 211.0 -8.0 84 5-88 135-218 (224)
4 2zkr_h 60S ribosomal protein L 99.9 9.2E-28 3.2E-32 181.4 2.8 78 5-82 135-212 (214)
5 2pa2_A 60S ribosomal protein L 99.6 3.7E-16 1.3E-20 112.8 2.7 47 6-52 105-151 (151)
6 3j21_N 50S ribosomal protein L 98.3 1.8E-07 6.1E-12 69.2 2.3 35 6-40 133-169 (181)
7 1vq8_H 50S ribosomal protein L 98.3 4.1E-07 1.4E-11 66.7 3.2 36 5-40 133-168 (171)
8 1ffk_F Ribosomal protein L10E; 98.0 2.4E-06 8.1E-11 61.9 2.0 26 15-40 129-154 (157)
9 2zjr_J 50S ribosomal protein L 97.3 4.4E-05 1.5E-09 54.0 0.7 27 13-39 110-136 (142)
10 3bbo_O Ribosomal protein L16; 97.3 7E-05 2.4E-09 52.5 1.7 26 13-38 109-134 (135)
11 3r8s_M 50S ribosomal protein L 97.1 0.00026 8.9E-09 49.7 2.9 26 13-38 108-133 (136)
12 2ftc_I Mitochondrial ribosomal 96.2 0.0016 5.4E-08 44.6 1.7 23 12-34 96-118 (118)
13 3rtx_A MRNA-capping enzyme; gu 38.2 37 0.0013 26.2 4.2 23 18-40 33-55 (343)
14 2q2k_A Hypothetical protein; p 36.3 14 0.00049 23.0 1.3 18 8-25 45-62 (70)
15 2foj_A Ubiquitin carboxyl-term 33.2 19 0.00064 23.4 1.6 38 38-75 112-153 (155)
16 1ofc_X ISWI protein; nuclear p 32.8 18 0.00061 28.0 1.6 18 40-57 107-124 (304)
17 2y9y_A Imitation switch protei 30.4 18 0.0006 29.0 1.2 18 40-57 120-137 (374)
18 3pkz_A Recombinase SIN; small 29.5 71 0.0024 20.1 3.9 50 3-57 3-52 (124)
19 2cs4_A Protein C12ORF2; GTP bi 27.8 53 0.0018 21.5 3.1 36 5-44 20-57 (95)
20 3oc8_A Toxin coregulated pilus 25.4 24 0.00082 24.6 1.1 42 27-71 80-129 (137)
21 3ivv_A Speckle-type POZ protei 23.9 27 0.00091 22.4 1.0 27 38-64 107-133 (145)
22 3uj3_X DNA-invertase; helix-tu 23.5 48 0.0016 22.3 2.3 50 2-57 2-51 (193)
23 2k9k_A TONB2; metal transport; 22.3 47 0.0016 20.4 1.9 20 12-32 66-85 (106)
No 1
>4a17_H RPL10, 60S ribosomal protein L10; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_H 4a1c_H 4a1e_H
Probab=99.97 E-value=1.4e-31 Score=202.30 Aligned_cols=76 Identities=43% Similarity=0.730 Sum_probs=72.3
Q ss_pred ccccccCCCChhHHHHHHhhhccCCCCcceEEeeccccccccChHHHHhhhhcCeeecCCCeEEEeCCCCCCCCCC
Q 043054 5 LVNPIPSRPIANPTQEALRRAKFKFPVRQKIIVSRKWGFTKFSRADYLRWNSENRIVPDGMNAKLFGCHGPLADRQ 80 (90)
Q Consensus 5 ~~~~~~k~~~~~~viEALRRAKfKFPGRQKI~vSkkWGFTk~~r~ey~~~~~eg~Li~dG~~vk~i~~~GPL~~~~ 80 (90)
|..+..+++|+++|+||||||++|||++|||++|+|||||+|++|||++|+++|+|++|||+|||+++||||++|.
T Consensus 135 lfei~g~~~~~~~A~eALr~A~~KlP~~tkiv~~~kwgft~~~~~~~~~~~~~~~l~~dg~~~k~~~~~gpl~~~~ 210 (215)
T 4a17_H 135 LFSVRVKEPHVKYAIDALTRAKAKFPGRQKVVTSQKWGFTKLTRAQYSRLRNQKKLVTDGSNVKVIGERGPLSRLE 210 (215)
T ss_dssp EEEEEECGGGHHHHHHHHHHHGGGSSSCEEEEEESBCTTSSSBHHHHHHHHHTTCEEEETTEEEECCTTSCTTTSG
T ss_pred EEEEEecCCCHHHHHHHHHHHhhhCCCceEEEEccccCCCccCHHHHHHHHHCCeEecCCccEEEccCCCCHHHHh
Confidence 4455678899999999999999999999999999999999999999999999999999999999999999999995
No 2
>3j0l_J Ribosomal protein L10; mammalia, translation, elongation cycle, tRNA, ribosome; 9.80A {Oryctolagus cuniculus} PDB: 3j0q_J 3izc_I 3izs_I 3o58_J 3o5h_J 3u5e_I 3u5i_I 4b6a_I
Probab=99.96 E-value=2.9e-31 Score=201.10 Aligned_cols=77 Identities=34% Similarity=0.611 Sum_probs=73.0
Q ss_pred ccccccCCCChhHHHHHHhhhccCCCCcceEEeeccccccccChHHHHhhhhcCeeecCCCeEEEeCCCCCCCCCCC
Q 043054 5 LVNPIPSRPIANPTQEALRRAKFKFPVRQKIIVSRKWGFTKFSRADYLRWNSENRIVPDGMNAKLFGCHGPLADRQP 81 (90)
Q Consensus 5 ~~~~~~k~~~~~~viEALRRAKfKFPGRQKI~vSkkWGFTk~~r~ey~~~~~eg~Li~dG~~vk~i~~~GPL~~~~~ 81 (90)
|..+..+++|+++|+||||||++|||++|||++|+|||||+|++|||++|+++|+|++|||+|||+++||||++|..
T Consensus 133 lfei~g~~~~~~~A~eALr~A~~KLP~~tkiv~~~kwgft~~~~~~~~~~~~~~~l~~dg~~~k~~~~~gpl~~~~~ 209 (219)
T 3j0l_J 133 IFSVRTKDSNKDVVVEGLRRARYKFPGQQKIILSKKWGFTNLDRPEYLKKREAGEVKDDGAFVKFLSKKGSLENNIR 209 (219)
T ss_dssp ESCCCCCGGGHHHHHHHHHHHHHSSSCCCCCEECCCSSSSSCSCHHHHTTTTSCCSCCCSSSCCCSCCSSSCHHHHH
T ss_pred EEEEEecCcCHHHHHHHHHHHhhhCCCCeEEEEecccCccccCHHHHHHHHHCCeEecCCccEEEccCCCCHHHHHH
Confidence 45566788999999999999999999999999999999999999999999999999999999999999999999964
No 3
>3iz5_I 60S ribosomal protein L10 (L10E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_I 1s1i_I 3jyw_I
Probab=99.96 E-value=5.7e-33 Score=210.99 Aligned_cols=84 Identities=57% Similarity=0.949 Sum_probs=80.1
Q ss_pred ccccccCCCChhHHHHHHhhhccCCCCcceEEeeccccccccChHHHHhhhhcCeeecCCCeEEEeCCCCCCCCCCCCcc
Q 043054 5 LVNPIPSRPIANPTQEALRRAKFKFPVRQKIIVSRKWGFTKFSRADYLRWNSENRIVPDGMNAKLFGCHGPLADRQPGRA 84 (90)
Q Consensus 5 ~~~~~~k~~~~~~viEALRRAKfKFPGRQKI~vSkkWGFTk~~r~ey~~~~~eg~Li~dG~~vk~i~~~GPL~~~~~~~~ 84 (90)
|..+..+++|+++|+||||||++|||++|||++|+|||||+|++|||++|++||+|++|||+|||+++||||++|.++.+
T Consensus 135 lfei~g~~~~~~~A~eALrrA~~KLP~ktkiv~~~kwgft~~~~~~~~~~~~~~~l~~dg~~vk~~~~~gpl~~~~~~~~ 214 (224)
T 3iz5_I 135 LLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRLAKRAPGKA 214 (224)
T ss_dssp EECCCCCCCCSSCSSSSSSCCCSCCCCCEEEEECCTTTEEEEEEECCSSSCSHHHHHHHHHHHTSSSCEECCCCCSSTTH
T ss_pred EEEEEecCcCHHHHHHHHHHHhhhCCCceEEEEecccCccccCHHHHHHHHHcCcEecCCcceEEcCCCCChHHcCcccc
Confidence 55667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 043054 85 FLEA 88 (90)
Q Consensus 85 ~~~~ 88 (90)
|..+
T Consensus 215 ~~~~ 218 (224)
T 3iz5_I 215 FLAE 218 (224)
T ss_dssp HHHH
T ss_pred cccc
Confidence 8865
No 4
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.93 E-value=9.2e-28 Score=181.39 Aligned_cols=78 Identities=41% Similarity=0.666 Sum_probs=31.6
Q ss_pred ccccccCCCChhHHHHHHhhhccCCCCcceEEeeccccccccChHHHHhhhhcCeeecCCCeEEEeCCCCCCCCCCCC
Q 043054 5 LVNPIPSRPIANPTQEALRRAKFKFPVRQKIIVSRKWGFTKFSRADYLRWNSENRIVPDGMNAKLFGCHGPLADRQPG 82 (90)
Q Consensus 5 ~~~~~~k~~~~~~viEALRRAKfKFPGRQKI~vSkkWGFTk~~r~ey~~~~~eg~Li~dG~~vk~i~~~GPL~~~~~~ 82 (90)
|..+..++.+.++|.||||+|++|||++|||++|++||||+|+++||++|+++|+|++|||+|||+++||||++|...
T Consensus 135 lfEi~~~~v~~~~A~eALr~A~~KLP~ktkiv~~~~~gft~~~~~~~~~~~~~~~~~~dg~~~~~~~~~g~l~~~~~~ 212 (214)
T 2zkr_h 135 IMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENMVAEKRLIPDGCGVKYIPNRGPLDKWRAL 212 (214)
T ss_dssp EEEEEECSTTHHHHHHHHHHHHHTSSSCEEEEECC-------------------------------------------
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhhCCCcEEEEEeccCCccccCHHHHHHHHHCCeEecCCceEEEECCCCChHHhhhc
Confidence 344566789999999999999999999999999999999999999999999999999999999999999999999753
No 5
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1
Probab=99.58 E-value=3.7e-16 Score=112.81 Aligned_cols=47 Identities=49% Similarity=0.749 Sum_probs=37.8
Q ss_pred cccccCCCChhHHHHHHhhhccCCCCcceEEeeccccccccChHHHH
Q 043054 6 VNPIPSRPIANPTQEALRRAKFKFPVRQKIIVSRKWGFTKFSRADYL 52 (90)
Q Consensus 6 ~~~~~k~~~~~~viEALRRAKfKFPGRQKI~vSkkWGFTk~~r~ey~ 52 (90)
..+..++.+.++|.||||||++|||++|||++|++||||+|+++||+
T Consensus 105 fei~~~~v~~~~A~eAlr~A~~KlP~ktkiv~~~~~gft~~~~~~~~ 151 (151)
T 2pa2_A 105 MSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFE 151 (151)
T ss_dssp EEEEECGGGHHHHHHHHHHHGGGSSSCEEEEEESCCCCCBC------
T ss_pred EEEECCCCCHHHHHHHHHHHHhhCCCcEEEEEeccCCCCCCChhhCC
Confidence 34456778999999999999999999999999999999999999995
No 6
>3j21_N 50S ribosomal protein L10E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=98.33 E-value=1.8e-07 Score=69.23 Aligned_cols=35 Identities=26% Similarity=0.288 Sum_probs=31.2
Q ss_pred cccccCCCChhHHHHHHhhhccCCCCcc--eEEeecc
Q 043054 6 VNPIPSRPIANPTQEALRRAKFKFPVRQ--KIIVSRK 40 (90)
Q Consensus 6 ~~~~~k~~~~~~viEALRRAKfKFPGRQ--KI~vSkk 40 (90)
..+..+++|.++|+||||||++|||++| ||++|+.
T Consensus 133 fei~~~~~~~~~A~eAlr~A~~KlP~~t~~kiv~~~~ 169 (181)
T 3j21_N 133 LSIRVNRQHLKFAIEGARRAAMKFPCKCYYRIYDKEG 169 (181)
T ss_dssp EEEEECSTTHHHHHHHHHHHHHSSSSCCSSCEEECCC
T ss_pred EEEEecCCCHHHHHHHHHHHhccCCCCeeeEEEEecc
Confidence 3445688999999999999999999999 9999975
No 7
>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ...
Probab=98.27 E-value=4.1e-07 Score=66.69 Aligned_cols=36 Identities=28% Similarity=0.157 Sum_probs=31.9
Q ss_pred ccccccCCCChhHHHHHHhhhccCCCCcceEEeecc
Q 043054 5 LVNPIPSRPIANPTQEALRRAKFKFPVRQKIIVSRK 40 (90)
Q Consensus 5 ~~~~~~k~~~~~~viEALRRAKfKFPGRQKI~vSkk 40 (90)
|..+..++.+.++|.||||+|++|||++|||++|++
T Consensus 133 lfei~~~~v~~~~A~eAlr~A~~KLP~ktkiv~~~~ 168 (171)
T 1vq8_H 133 LFTAYCNVEDAEHVKEAFRRAYNKITPSCRIDSSPA 168 (171)
T ss_dssp EEEEEECTTTHHHHHHHHHHHGGGSSSCEEEEECSC
T ss_pred EEEEECcCCCHHHHHHHHHHHHhhCCCcEEEEEecC
Confidence 344566789999999999999999999999999876
No 8
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ...
Probab=97.97 E-value=2.4e-06 Score=61.86 Aligned_cols=26 Identities=27% Similarity=0.139 Sum_probs=24.1
Q ss_pred hhHHHHHHhhhccCCCCcceEEeecc
Q 043054 15 ANPTQEALRRAKFKFPVRQKIIVSRK 40 (90)
Q Consensus 15 ~~~viEALRRAKfKFPGRQKI~vSkk 40 (90)
.++|.||||+|++|||++|||++|++
T Consensus 129 ~~~A~eAlr~A~~KlP~ktkiv~~~~ 154 (157)
T 1ffk_F 129 DPAVEFAWRRAYMKVTPTVNIDSSPA 154 (157)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEecC
Confidence 44999999999999999999999886
No 9
>2zjr_J 50S ribosomal protein L16; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.41.4.2 PDB: 1sm1_K* 2zjp_J* 2zjq_J 1nkw_K 3cf5_J* 3dll_J* 3pio_J* 1njm_K* 1nwx_K* 1njp_K* 1xbp_K* 1y69_K 1nwy_K* 3pip_J* 1pnu_K 1pny_K 1vor_N 1vou_N 1vow_N 1voy_N ...
Probab=97.31 E-value=4.4e-05 Score=54.02 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=25.3
Q ss_pred CChhHHHHHHhhhccCCCCcceEEeec
Q 043054 13 PIANPTQEALRRAKFKFPVRQKIIVSR 39 (90)
Q Consensus 13 ~~~~~viEALRRAKfKFPGRQKI~vSk 39 (90)
.+.++|.||||+|.+|+|++++|++++
T Consensus 110 v~~~~A~eAlr~A~~KLP~~~kiv~~~ 136 (142)
T 2zjr_J 110 VTEEQAKEAFRLAGHKLPIQTKMVKRE 136 (142)
T ss_dssp SCSTTTTTHHHHHHHTCSSCEEEECSC
T ss_pred CCHHHHHHHHHHHHhhCCCcEEEEEec
Confidence 688999999999999999999999876
No 10
>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=97.31 E-value=7e-05 Score=52.54 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=24.5
Q ss_pred CChhHHHHHHhhhccCCCCcceEEee
Q 043054 13 PIANPTQEALRRAKFKFPVRQKIIVS 38 (90)
Q Consensus 13 ~~~~~viEALRRAKfKFPGRQKI~vS 38 (90)
.+.++|.||||+|.+|+|++++|++|
T Consensus 109 v~~~~A~eAlr~a~~KLP~~~kiv~~ 134 (135)
T 3bbo_O 109 VAENIARRAVAIAASKMPIRTQFIIS 134 (135)
T ss_dssp SCTTHHHHHHHHHHHHCSSCEEEECC
T ss_pred CCHHHHHHHHHHHHhhCCCcEEEEec
Confidence 68899999999999999999999876
No 11
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Probab=97.12 E-value=0.00026 Score=49.74 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=23.5
Q ss_pred CChhHHHHHHhhhccCCCCcceEEee
Q 043054 13 PIANPTQEALRRAKFKFPVRQKIIVS 38 (90)
Q Consensus 13 ~~~~~viEALRRAKfKFPGRQKI~vS 38 (90)
.+.++|.||||+|.+|+|++++|++-
T Consensus 108 ~~~~~A~eAlr~a~~KLP~~~kiv~~ 133 (136)
T 3r8s_M 108 VPEELAREAFKLAAAKLPIKTTFVTK 133 (136)
T ss_dssp SCHHHHHHHHHHHHTTCSSCEEEEEC
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 38999999999999999999998753
No 12
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=96.25 E-value=0.0016 Score=44.60 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.7
Q ss_pred CCChhHHHHHHhhhccCCCCcce
Q 043054 12 RPIANPTQEALRRAKFKFPVRQK 34 (90)
Q Consensus 12 ~~~~~~viEALRRAKfKFPGRQK 34 (90)
+.+.++|.||||+|.+|+|++.+
T Consensus 96 ~~~~~~a~eAlr~a~~KlP~~~~ 118 (118)
T 2ftc_I 96 RCEFEEVQGFLDQVAHKLPFAAK 118 (118)
T ss_pred cCCHHHHHHHHHHHHhhCCCCCC
Confidence 48999999999999999999753
No 13
>3rtx_A MRNA-capping enzyme; guanylyltransferase, RNA polymerase II CTD, lysyl-N-GMP, NUC mRNA capping, transferase; HET: SEP GUN; 2.81A {Mus musculus} PDB: 3s24_A
Probab=38.20 E-value=37 Score=26.18 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=15.2
Q ss_pred HHHHHhhhccCCCCcceEEeecc
Q 043054 18 TQEALRRAKFKFPVRQKIIVSRK 40 (90)
Q Consensus 18 viEALRRAKfKFPGRQKI~vSkk 40 (90)
+.+-|.+.+--|||.|=|-.|++
T Consensus 33 v~~~~~~~~~~FPGsqPVS~~r~ 55 (343)
T 3rtx_A 33 CHQFCGWEGSGFPGAQPVSMDKQ 55 (343)
T ss_dssp HHHHTTCCSSSCCSEEEEECCTT
T ss_pred HHHHhCCCCCCCCCceeeccchh
Confidence 34444455678999999955543
No 14
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=36.27 E-value=14 Score=23.00 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=14.4
Q ss_pred cccCCCChhHHHHHHhhh
Q 043054 8 PIPSRPIANPTQEALRRA 25 (90)
Q Consensus 8 ~~~k~~~~~~viEALRRA 25 (90)
-.++-...+|+.|||||-
T Consensus 45 nvprgtktahirealrry 62 (70)
T 2q2k_A 45 NVPRGTKTAHIREALRRY 62 (70)
T ss_dssp TSCTTCHHHHHHHHHHHH
T ss_pred cCCCccchHHHHHHHHHH
Confidence 356677789999999983
No 15
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=33.21 E-value=19 Score=23.35 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=22.0
Q ss_pred eccccccccChHHHHhhhhcCeeecCC----CeEEEeCCCCC
Q 043054 38 SRKWGFTKFSRADYLRWNSENRIVPDG----MNAKLFGCHGP 75 (90)
Q Consensus 38 SkkWGFTk~~r~ey~~~~~eg~Li~dG----~~vk~i~~~GP 75 (90)
+..|||++|-.-+-..-.++|.|+.|- |.|+.....|-
T Consensus 112 ~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG~ 153 (155)
T 2foj_A 112 ENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGV 153 (155)
T ss_dssp BCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCBSS
T ss_pred CCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCcccc
Confidence 356999998544432212556665443 66776665553
No 16
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=32.77 E-value=18 Score=28.03 Aligned_cols=18 Identities=22% Similarity=0.547 Sum_probs=15.0
Q ss_pred cccccccChHHHHhhhhc
Q 043054 40 KWGFTKFSRADYLRWNSE 57 (90)
Q Consensus 40 kWGFTk~~r~ey~~~~~e 57 (90)
.+||++|++.||......
T Consensus 107 ~eGF~~W~rrdf~~Fi~a 124 (304)
T 1ofc_X 107 SQGFTAWTKRDFNQFIKA 124 (304)
T ss_dssp TSSCTTCCHHHHHHHHHH
T ss_pred HhhhcccCHHHHHHHHHH
Confidence 589999999999886543
No 17
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=30.38 E-value=18 Score=29.00 Aligned_cols=18 Identities=17% Similarity=0.508 Sum_probs=15.3
Q ss_pred cccccccChHHHHhhhhc
Q 043054 40 KWGFTKFSRADYLRWNSE 57 (90)
Q Consensus 40 kWGFTk~~r~ey~~~~~e 57 (90)
.+||++|++.||..+...
T Consensus 120 ~eGF~~WnrrDF~~FI~a 137 (374)
T 2y9y_A 120 SEGFTNWNKLEFRKFITV 137 (374)
T ss_dssp HHCCCCSCHHHHHHHHHH
T ss_pred HhhhcccCHHHHHHHHHH
Confidence 579999999999887653
No 18
>3pkz_A Recombinase SIN; small serine recombinase, resolvase, DNA, recombination; 1.80A {Staphylococcus aureus}
Probab=29.52 E-value=71 Score=20.12 Aligned_cols=50 Identities=14% Similarity=0.053 Sum_probs=34.7
Q ss_pred ccccccccCCCChhHHHHHHhhhccCCCCcceEEeeccccccccChHHHHhhhhc
Q 043054 3 LGLVNPIPSRPIANPTQEALRRAKFKFPVRQKIIVSRKWGFTKFSRADYLRWNSE 57 (90)
Q Consensus 3 ~~~~~~~~k~~~~~~viEALRRAKfKFPGRQKI~vSkkWGFTk~~r~ey~~~~~e 57 (90)
.|.+..-+.+|+.+.=+++|++.- .++|+.=..=|-+..+|.+|.+|.+.
T Consensus 3 i~Y~RvSt~~Qsl~~Q~~~l~~~~-----~~~i~~d~~Sg~~~~~Rp~l~~ll~~ 52 (124)
T 3pkz_A 3 IGYARVSSLDQNLERQLENLKTFG-----AEKIFTEKQSGKSIENRPILQKALNF 52 (124)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHTT-----CSEEEEEESCSSCSTTCHHHHHHHHH
T ss_pred EEEEEeCCCcCCHHHHHHHHHHhC-----CceEEEEcccCCChhcCHHHHHHHHH
Confidence 455556677788777788888763 34666544336544789999999875
No 19
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=27.77 E-value=53 Score=21.54 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=28.9
Q ss_pred ccccccCCCChhHHHHHHhhhccCCCCc-ceEEeeccc-ccc
Q 043054 5 LVNPIPSRPIANPTQEALRRAKFKFPVR-QKIIVSRKW-GFT 44 (90)
Q Consensus 5 ~~~~~~k~~~~~~viEALRRAKfKFPGR-QKI~vSkkW-GFT 44 (90)
.|.+++..-.=+.||+||-.| +|. +.-++..+| |+-
T Consensus 20 ~VsGvT~~TTC~DVV~aL~~~----~G~~~~y~LvE~wRg~E 57 (95)
T 2cs4_A 20 IVCGVTEVTTCQEVVIALAQA----IGRTGRYTLIEKWRDTE 57 (95)
T ss_dssp CCSSBCSSSCHHHHHHHHHHH----HSCCSEEEEEEEETTEE
T ss_pred EEECCCCCCcHHHHHHHHHhc----cCCCccEEEEEecCCCe
Confidence 356788888889999999887 785 788888999 553
No 20
>3oc8_A Toxin coregulated pilus biosynthesis protein F; immunoglobulin-like fold, cell adhesion; 2.10A {Vibrio cholerae}
Probab=25.38 E-value=24 Score=24.60 Aligned_cols=42 Identities=26% Similarity=0.423 Sum_probs=26.7
Q ss_pred cCCCCcceEEeecc-------ccccccChHHHHhhhhcCee-ecCCCeEEEeC
Q 043054 27 FKFPVRQKIIVSRK-------WGFTKFSRADYLRWNSENRI-VPDGMNAKLFG 71 (90)
Q Consensus 27 fKFPGRQKI~vSkk-------WGFTk~~r~ey~~~~~eg~L-i~dG~~vk~i~ 71 (90)
--|||+|.--+|.+ |.=|-|+...|. .+--| ..||.+|++..
T Consensus 80 nn~~gkkiy~vstnd~hngyqwsntmfsnskyr---tqvvltk~dgsgvklys 129 (137)
T 3oc8_A 80 NNLTGKKLYNVSTNDMHNGYKWSNTMFSNSNYK---TQILLTKGDGSGVKLYS 129 (137)
T ss_dssp CCCTTEEEEEEECCHHHHTSHHHHHHTTCTTCE---EEEEEEETTSCSCCEEC
T ss_pred CCCCCceEEEEecccccccceechhhccCCCce---EEEEEEecCCCceEEeh
Confidence 45999999999986 444445444442 11111 27999999765
No 21
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=23.88 E-value=27 Score=22.42 Aligned_cols=27 Identities=33% Similarity=0.684 Sum_probs=15.8
Q ss_pred eccccccccChHHHHhhhhcCeeecCC
Q 043054 38 SRKWGFTKFSRADYLRWNSENRIVPDG 64 (90)
Q Consensus 38 SkkWGFTk~~r~ey~~~~~eg~Li~dG 64 (90)
+..|||++|-+-+-..-.+.+.|+.|-
T Consensus 107 ~~~wG~~~Fi~~~~L~~~~~~yl~dD~ 133 (145)
T 3ivv_A 107 GKDWGFKKFIRRDFLLDEANGLLPDDK 133 (145)
T ss_dssp TCEEEEEEEEEHHHHHCGGGCSSGGGC
T ss_pred CCCcCHHHeEEhhhhccccCCcEeCCE
Confidence 456999998654432213456666553
No 22
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=23.51 E-value=48 Score=22.28 Aligned_cols=50 Identities=18% Similarity=0.115 Sum_probs=35.6
Q ss_pred CccccccccCCCChhHHHHHHhhhccCCCCcceEEeeccccccccChHHHHhhhhc
Q 043054 2 GLGLVNPIPSRPIANPTQEALRRAKFKFPVRQKIIVSRKWGFTKFSRADYLRWNSE 57 (90)
Q Consensus 2 ~~~~~~~~~k~~~~~~viEALRRAKfKFPGRQKI~vSkkWGFTk~~r~ey~~~~~e 57 (90)
=.|.+..-+.+|+.+.=+++|+.+ |..+|+.=..=|- +++|.+|.+|.+.
T Consensus 2 ~i~Y~RvSt~~Q~~~~Q~~~l~~~-----~~~~i~~D~~SG~-~~~Rp~l~~ll~~ 51 (193)
T 3uj3_X 2 LIGYVRVATNDQNTDLQRNALVCA-----GCEQIFEDKLSGT-RTDRPGLKRALKR 51 (193)
T ss_dssp CEECEECSSCCSSHHHHHHHHHHT-----TCCBCCEECCSSC-SSSCSTTHHHHHT
T ss_pred EEEEEEeCCcccCHHHHHHHHHHc-----CCcEEEEECCcCC-CCCCHHHHHHHHH
Confidence 345666667888888888899875 4556655433353 4789999999886
No 23
>2k9k_A TONB2; metal transport; NMR {Listonella anguillarum}
Probab=22.35 E-value=47 Score=20.42 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=15.1
Q ss_pred CCChhHHHHHHhhhccCCCCc
Q 043054 12 RPIANPTQEALRRAKFKFPVR 32 (90)
Q Consensus 12 ~~~~~~viEALRRAKfKFPGR 32 (90)
..-...|++|+++++|+ |+.
T Consensus 66 ~~ld~aAl~av~~~~f~-P~~ 85 (106)
T 2k9k_A 66 RMFEREAMQALKKWKYQ-PQI 85 (106)
T ss_dssp SSSHHHHHHHHHHCCCC-CCC
T ss_pred HHHHHHHHHHHHhCCCC-CCC
Confidence 34567899999998884 754
Done!