RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 043054
         (90 letters)



>d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 137

 Score = 59.9 bits (145), Expect = 9e-14
 Identities = 23/27 (85%), Positives = 25/27 (92%)

Query: 20  EALRRAKFKFPVRQKIIVSRKWGFTKF 46
           EALRRAKFKFP RQKI +S+KWGFTKF
Sbjct: 111 EALRRAKFKFPGRQKIHISKKWGFTKF 137


>d1jj2h_ d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcula
           marismortui [TaxId: 2238]}
          Length = 167

 Score = 35.5 bits (82), Expect = 2e-04
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 19  QEALRRAKFKFPVRQKIIVS 38
           +EA RRAK K      I  S
Sbjct: 143 EEAWRRAKMKVTPTINIDSS 162


>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 163

 Score = 31.4 bits (71), Expect = 0.007
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 19  QEALRRAKFKFPVRQKI 35
           +EA RRA  K     +I
Sbjct: 147 KEAFRRAYNKITPSCRI 163


>d2gyck1 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escherichia coli
           [TaxId: 562]}
          Length = 131

 Score = 25.5 bits (56), Expect = 0.73
 Identities = 5/19 (26%), Positives = 10/19 (52%)

Query: 19  QEALRRAKFKFPVRQKIIV 37
           +EA + A  K P++   + 
Sbjct: 112 REAFKLAAAKLPIKTTFVT 130


>d1v33a_ d.264.1.1 (A:) DNA primase {Archaeon Pyrococcus
          horikoshii [TaxId: 53953]}
          Length = 346

 Score = 25.8 bits (56), Expect = 0.84
 Identities = 5/18 (27%), Positives = 7/18 (38%)

Query: 39 RKWGFTKFSRADYLRWNS 56
          R++GF         R N 
Sbjct: 35 REFGFDHSGEGPSDRKNQ 52


>d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus
           thermophilus [TaxId: 274]}
          Length = 136

 Score = 25.2 bits (55), Expect = 0.88
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 19  QEALRRAKFKFPVRQKIIV 37
            EALR A  K P++ KI+ 
Sbjct: 110 MEALRIAGHKLPIKTKIVR 128


>d1zt2a1 d.264.1.1 (A:3-329) DNA primase small subunit PriA
          {Sulfolobus solfataricus [TaxId: 2287]}
          Length = 327

 Score = 23.4 bits (50), Expect = 4.8
 Identities = 5/18 (27%), Positives = 8/18 (44%)

Query: 39 RKWGFTKFSRADYLRWNS 56
          R++    F    Y+R  S
Sbjct: 34 REFALQPFGSDTYVRHLS 51


>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 88

 Score = 22.4 bits (48), Expect = 6.5
 Identities = 7/27 (25%), Positives = 14/27 (51%)

Query: 24 RAKFKFPVRQKIIVSRKWGFTKFSRAD 50
          +  F+F  + K  ++ +WG  K +R  
Sbjct: 28 KGTFQFSSKHKEALAHRWGIQKGNRKK 54


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.140    0.446 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 353,495
Number of extensions: 14205
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 8
Length of query: 90
Length of database: 2,407,596
Length adjustment: 54
Effective length of query: 36
Effective length of database: 1,666,176
Effective search space: 59982336
Effective search space used: 59982336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.1 bits)