Query 043056
Match_columns 559
No_of_seqs 342 out of 2904
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 12:23:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043056.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043056hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.7E-72 8E-77 614.1 45.0 512 38-559 25-572 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 1.2E-44 2.6E-49 359.3 17.1 273 159-434 1-285 (287)
3 PLN03210 Resistant to P. syrin 100.0 7.6E-40 1.7E-44 377.9 35.3 354 151-539 181-566 (1153)
4 PRK04841 transcriptional regul 99.7 1.1E-14 2.4E-19 167.5 26.4 297 151-483 11-333 (903)
5 COG2909 MalT ATP-dependent tra 99.5 3.6E-13 7.8E-18 142.3 19.8 300 150-485 15-341 (894)
6 TIGR03015 pepcterm_ATPase puta 99.3 1.7E-10 3.7E-15 113.1 22.2 183 173-358 41-243 (269)
7 PRK00411 cdc6 cell division co 99.3 3.2E-10 7E-15 117.7 24.5 288 153-460 29-358 (394)
8 COG3899 Predicted ATPase [Gene 99.3 8.2E-11 1.8E-15 131.2 20.0 310 155-485 1-389 (849)
9 TIGR02928 orc1/cdc6 family rep 99.3 1.8E-09 3.9E-14 110.9 28.1 288 154-460 15-350 (365)
10 PF01637 Arch_ATPase: Archaeal 99.3 1.8E-11 3.8E-16 117.3 11.2 194 156-352 1-233 (234)
11 PF05729 NACHT: NACHT domain 99.2 7.5E-11 1.6E-15 106.5 11.9 144 176-324 1-164 (166)
12 TIGR00635 ruvB Holliday juncti 99.2 1.1E-09 2.3E-14 109.6 20.3 274 153-463 3-292 (305)
13 PRK00080 ruvB Holliday junctio 99.2 3.3E-09 7.1E-14 106.9 20.4 277 150-463 21-313 (328)
14 PRK13342 recombination factor 98.9 5.2E-08 1.1E-12 101.2 18.2 181 151-357 9-200 (413)
15 COG2256 MGS1 ATPase related to 98.9 2E-08 4.4E-13 98.5 13.6 225 150-401 20-266 (436)
16 PRK06893 DNA replication initi 98.9 3.4E-08 7.3E-13 94.0 13.1 153 174-355 38-205 (229)
17 COG3903 Predicted ATPase [Gene 98.9 6.5E-09 1.4E-13 102.6 8.3 292 174-484 13-316 (414)
18 PRK07003 DNA polymerase III su 98.8 2.1E-07 4.5E-12 99.7 19.2 186 150-357 12-225 (830)
19 PRK12402 replication factor C 98.8 1.2E-07 2.6E-12 96.2 16.3 200 151-352 12-225 (337)
20 PRK12323 DNA polymerase III su 98.8 3E-07 6.6E-12 97.1 18.6 200 150-352 12-224 (700)
21 PF13173 AAA_14: AAA domain 98.8 1.5E-08 3.3E-13 87.1 6.9 121 175-315 2-127 (128)
22 PRK14949 DNA polymerase III su 98.8 2.9E-07 6.4E-12 100.4 17.8 186 150-353 12-221 (944)
23 PRK05564 DNA polymerase III su 98.8 6.1E-07 1.3E-11 89.8 19.1 176 154-351 4-188 (313)
24 PTZ00112 origin recognition co 98.7 1.1E-06 2.3E-11 94.9 21.1 202 154-358 755-987 (1164)
25 PRK00440 rfc replication facto 98.7 1.1E-06 2.4E-11 88.4 20.6 184 151-351 14-201 (319)
26 PRK14961 DNA polymerase III su 98.7 4.8E-07 1E-11 92.3 16.8 193 150-350 12-217 (363)
27 PRK04195 replication factor C 98.7 3.4E-06 7.3E-11 89.5 23.2 186 150-358 10-207 (482)
28 TIGR03420 DnaA_homol_Hda DnaA 98.7 1.3E-07 2.8E-12 90.2 11.3 170 159-356 22-204 (226)
29 PRK14963 DNA polymerase III su 98.7 1.7E-06 3.8E-11 91.2 20.6 199 151-358 11-223 (504)
30 PLN03025 replication factor C 98.7 4.5E-07 9.7E-12 91.0 15.6 185 150-350 9-197 (319)
31 COG1474 CDC6 Cdc6-related prot 98.7 1.4E-06 3.1E-11 88.0 19.2 278 156-458 19-332 (366)
32 PF13401 AAA_22: AAA domain; P 98.6 2.1E-07 4.6E-12 80.3 9.4 116 174-291 3-125 (131)
33 cd00009 AAA The AAA+ (ATPases 98.6 4.1E-07 8.8E-12 79.9 11.4 122 158-293 2-131 (151)
34 PRK06645 DNA polymerase III su 98.6 1.2E-06 2.7E-11 91.9 16.6 201 150-355 17-232 (507)
35 PTZ00202 tuzin; Provisional 98.6 6.4E-06 1.4E-10 82.7 20.5 165 149-323 257-434 (550)
36 PRK14962 DNA polymerase III su 98.6 1.3E-06 2.8E-11 91.4 16.1 191 150-358 10-224 (472)
37 KOG2028 ATPase related to the 98.6 3.8E-07 8.2E-12 88.0 10.6 158 168-347 155-330 (554)
38 PRK14956 DNA polymerase III su 98.6 6.6E-07 1.4E-11 92.2 13.1 196 150-353 14-223 (484)
39 PRK14960 DNA polymerase III su 98.6 1.1E-06 2.5E-11 93.1 14.9 186 150-357 11-224 (702)
40 TIGR02397 dnaX_nterm DNA polym 98.6 5.4E-06 1.2E-10 84.8 19.8 185 151-354 11-219 (355)
41 PRK14957 DNA polymerase III su 98.6 1.8E-06 4E-11 91.2 16.1 186 150-357 12-225 (546)
42 PRK09112 DNA polymerase III su 98.5 2.7E-06 5.9E-11 85.7 16.6 198 150-353 19-240 (351)
43 TIGR02903 spore_lon_C ATP-depe 98.5 1.8E-06 3.9E-11 93.7 15.7 204 151-356 151-398 (615)
44 PRK07940 DNA polymerase III su 98.5 2.9E-06 6.3E-11 86.7 16.0 172 154-353 5-213 (394)
45 PRK07471 DNA polymerase III su 98.5 5.1E-06 1.1E-10 84.2 16.8 196 150-353 15-238 (365)
46 TIGR00678 holB DNA polymerase 98.5 4E-06 8.7E-11 77.3 14.8 158 166-348 4-186 (188)
47 PRK05896 DNA polymerase III su 98.5 6.1E-06 1.3E-10 87.5 17.8 198 150-355 12-223 (605)
48 cd01128 rho_factor Transcripti 98.5 5.4E-07 1.2E-11 86.1 9.0 90 175-265 16-114 (249)
49 PF13191 AAA_16: AAA ATPase do 98.5 5.7E-07 1.2E-11 82.7 9.0 48 155-202 1-51 (185)
50 PRK13341 recombination factor 98.5 2E-06 4.3E-11 94.3 14.5 173 150-348 24-212 (725)
51 PRK07994 DNA polymerase III su 98.5 2.5E-06 5.4E-11 91.7 14.9 196 150-353 12-221 (647)
52 PRK14958 DNA polymerase III su 98.5 2.1E-06 4.6E-11 90.8 14.0 190 150-357 12-225 (509)
53 PRK08691 DNA polymerase III su 98.5 2.2E-06 4.7E-11 91.8 14.1 186 150-357 12-225 (709)
54 PRK14964 DNA polymerase III su 98.5 4.2E-06 9.1E-11 87.3 15.5 186 150-353 9-218 (491)
55 PRK14955 DNA polymerase III su 98.5 1.8E-06 3.9E-11 89.1 12.8 203 150-353 12-229 (397)
56 PRK14951 DNA polymerase III su 98.4 4.3E-06 9.4E-11 89.6 15.7 198 150-352 12-224 (618)
57 PF05496 RuvB_N: Holliday junc 98.4 1.1E-05 2.5E-10 74.2 15.8 177 150-355 20-223 (233)
58 PRK14969 DNA polymerase III su 98.4 8.9E-06 1.9E-10 86.7 17.6 185 151-357 13-225 (527)
59 PRK14959 DNA polymerase III su 98.4 1.2E-05 2.5E-10 85.9 17.8 200 151-358 13-226 (624)
60 PRK09376 rho transcription ter 98.4 8E-07 1.7E-11 88.6 8.4 89 176-265 170-267 (416)
61 PRK08727 hypothetical protein; 98.4 3.9E-06 8.5E-11 80.0 12.9 161 162-350 28-201 (233)
62 PRK08084 DNA replication initi 98.4 4.3E-06 9.3E-11 79.9 13.1 167 160-355 30-211 (235)
63 TIGR01242 26Sp45 26S proteasom 98.4 3.5E-06 7.6E-11 86.2 13.3 173 153-347 121-328 (364)
64 PRK14970 DNA polymerase III su 98.4 1.1E-05 2.3E-10 82.9 16.9 187 150-354 13-211 (367)
65 PRK07764 DNA polymerase III su 98.3 1.1E-05 2.5E-10 89.5 15.5 183 151-355 12-224 (824)
66 PF14516 AAA_35: AAA-like doma 98.3 7.7E-05 1.7E-09 75.1 20.2 199 154-360 11-246 (331)
67 PRK09087 hypothetical protein; 98.3 1.2E-05 2.6E-10 76.1 13.6 141 175-354 44-196 (226)
68 PRK09111 DNA polymerase III su 98.3 1.6E-05 3.4E-10 85.6 15.9 199 150-353 20-233 (598)
69 PRK14971 DNA polymerase III su 98.3 2.4E-05 5.1E-10 84.8 16.8 181 151-350 14-219 (614)
70 PRK08903 DnaA regulatory inact 98.3 1.1E-05 2.3E-10 77.0 12.7 165 162-358 28-204 (227)
71 TIGR03345 VI_ClpV1 type VI sec 98.2 9.7E-06 2.1E-10 91.1 13.4 182 151-346 184-389 (852)
72 PF05621 TniB: Bacterial TniB 98.2 3.2E-05 7E-10 74.6 14.9 195 160-354 43-262 (302)
73 PRK08451 DNA polymerase III su 98.2 4E-05 8.8E-10 80.8 17.0 186 150-353 10-218 (535)
74 PRK14952 DNA polymerase III su 98.2 2.7E-05 5.8E-10 83.3 15.8 200 150-357 9-224 (584)
75 TIGR00767 rho transcription te 98.2 6.1E-06 1.3E-10 82.8 9.8 91 175-266 168-267 (415)
76 PRK14954 DNA polymerase III su 98.2 2.7E-05 5.9E-10 83.9 15.5 204 150-354 12-230 (620)
77 PRK03992 proteasome-activating 98.2 1.1E-05 2.4E-10 83.0 12.1 173 153-347 130-337 (389)
78 PHA02544 44 clamp loader, smal 98.2 1.1E-05 2.4E-10 81.0 11.8 149 150-321 17-171 (316)
79 PRK14950 DNA polymerase III su 98.2 5E-05 1.1E-09 82.3 17.1 197 151-354 13-222 (585)
80 TIGR02639 ClpA ATP-dependent C 98.2 1.5E-05 3.2E-10 88.9 13.2 160 151-323 179-358 (731)
81 KOG0989 Replication factor C, 98.2 9.8E-06 2.1E-10 77.1 9.7 183 150-347 32-224 (346)
82 PRK06305 DNA polymerase III su 98.2 6.6E-05 1.4E-09 78.6 16.7 182 151-355 14-225 (451)
83 COG1373 Predicted ATPase (AAA+ 98.1 2.6E-05 5.5E-10 80.3 12.9 139 158-320 21-164 (398)
84 PRK14087 dnaA chromosomal repl 98.1 7.4E-05 1.6E-09 78.2 16.3 167 176-356 142-322 (450)
85 PRK05642 DNA replication initi 98.1 5.6E-05 1.2E-09 72.1 14.2 152 176-355 46-210 (234)
86 PRK14953 DNA polymerase III su 98.1 9.6E-05 2.1E-09 77.9 17.2 182 151-354 13-221 (486)
87 PRK07399 DNA polymerase III su 98.1 0.0002 4.3E-09 71.2 18.5 194 154-353 4-221 (314)
88 KOG2227 Pre-initiation complex 98.1 0.00024 5.1E-09 71.6 18.7 208 151-358 147-373 (529)
89 PRK07133 DNA polymerase III su 98.1 5.2E-05 1.1E-09 82.3 15.3 183 150-354 14-221 (725)
90 TIGR02881 spore_V_K stage V sp 98.1 1.6E-05 3.4E-10 77.4 10.5 135 174-324 41-192 (261)
91 CHL00095 clpC Clp protease ATP 98.1 2.9E-05 6.4E-10 87.6 13.9 157 153-322 178-353 (821)
92 COG2255 RuvB Holliday junction 98.1 0.00047 1E-08 65.2 19.3 180 150-358 22-228 (332)
93 PRK14965 DNA polymerase III su 98.1 4.9E-05 1.1E-09 82.1 14.4 200 150-357 12-225 (576)
94 TIGR03689 pup_AAA proteasome A 98.1 5.2E-05 1.1E-09 79.5 13.9 160 153-325 181-380 (512)
95 PF00308 Bac_DnaA: Bacterial d 98.1 2.1E-05 4.6E-10 74.2 9.9 160 175-353 34-208 (219)
96 PRK06647 DNA polymerase III su 98.1 0.0001 2.2E-09 78.9 16.2 194 150-351 12-218 (563)
97 PRK05563 DNA polymerase III su 98.1 0.00017 3.7E-09 77.6 17.7 192 150-349 12-216 (559)
98 PRK14948 DNA polymerase III su 98.1 0.00013 2.9E-09 79.0 16.8 197 151-353 13-222 (620)
99 PRK11331 5-methylcytosine-spec 98.0 3.7E-05 8.1E-10 78.6 10.3 107 154-266 175-284 (459)
100 TIGR00362 DnaA chromosomal rep 98.0 0.00033 7.2E-09 72.9 17.7 180 176-372 137-337 (405)
101 TIGR02880 cbbX_cfxQ probable R 98.0 0.00013 2.7E-09 71.8 13.6 132 177-324 60-209 (284)
102 PTZ00454 26S protease regulato 98.0 0.00012 2.5E-09 75.2 13.6 173 153-347 144-351 (398)
103 PRK05707 DNA polymerase III su 98.0 0.00019 4.2E-09 71.7 14.8 155 175-353 22-203 (328)
104 CHL00181 cbbX CbbX; Provisiona 97.9 0.00018 4E-09 70.6 14.1 133 176-324 60-210 (287)
105 PF00004 AAA: ATPase family as 97.9 4E-05 8.8E-10 65.9 8.6 69 178-266 1-70 (132)
106 PRK00149 dnaA chromosomal repl 97.9 0.00036 7.8E-09 73.6 17.1 181 175-372 148-349 (450)
107 TIGR03346 chaperone_ClpB ATP-d 97.9 0.00015 3.3E-09 82.2 14.4 159 151-323 170-349 (852)
108 PRK10865 protein disaggregatio 97.9 0.00012 2.7E-09 82.6 12.9 159 151-323 175-354 (857)
109 smart00382 AAA ATPases associa 97.9 6.8E-05 1.5E-09 64.9 8.7 90 176-268 3-92 (148)
110 PRK14086 dnaA chromosomal repl 97.9 0.00063 1.4E-08 72.6 17.3 178 176-372 315-515 (617)
111 KOG2543 Origin recognition com 97.9 0.00012 2.6E-09 71.8 10.7 164 154-323 6-193 (438)
112 PRK14088 dnaA chromosomal repl 97.8 0.00027 5.8E-09 73.9 14.0 182 175-372 130-332 (440)
113 PRK06620 hypothetical protein; 97.8 8E-05 1.7E-09 69.9 9.0 135 176-351 45-187 (214)
114 PRK11034 clpA ATP-dependent Cl 97.8 4.9E-05 1.1E-09 83.9 8.6 158 153-323 185-362 (758)
115 PF05673 DUF815: Protein of un 97.8 0.00069 1.5E-08 63.5 14.7 53 150-202 23-79 (249)
116 TIGR01241 FtsH_fam ATP-depende 97.8 0.0003 6.6E-09 75.0 13.7 173 153-347 54-260 (495)
117 CHL00176 ftsH cell division pr 97.8 0.00031 6.7E-09 76.3 13.8 171 154-346 183-387 (638)
118 PRK12422 chromosomal replicati 97.8 0.0011 2.4E-08 69.2 17.3 153 176-347 142-307 (445)
119 PTZ00361 26 proteosome regulat 97.8 0.00019 4.2E-09 74.2 11.6 175 152-348 181-390 (438)
120 COG1222 RPT1 ATP-dependent 26S 97.8 0.0009 1.9E-08 65.4 14.8 183 152-358 149-372 (406)
121 PRK08769 DNA polymerase III su 97.7 0.001 2.3E-08 65.9 15.6 172 162-353 12-208 (319)
122 TIGR00602 rad24 checkpoint pro 97.7 0.00012 2.6E-09 78.9 9.7 201 150-357 80-327 (637)
123 KOG0991 Replication factor C, 97.7 0.00037 8E-09 63.8 10.7 101 152-266 25-125 (333)
124 PRK08058 DNA polymerase III su 97.7 0.0011 2.4E-08 66.7 15.0 146 156-322 7-181 (329)
125 PRK06871 DNA polymerase III su 97.7 0.0021 4.5E-08 64.0 16.5 175 163-350 11-200 (325)
126 PRK10536 hypothetical protein; 97.6 0.00061 1.3E-08 64.6 11.7 58 151-210 52-109 (262)
127 TIGR00763 lon ATP-dependent pr 97.6 0.0031 6.7E-08 71.0 19.4 157 155-323 321-505 (775)
128 PRK06090 DNA polymerase III su 97.6 0.0054 1.2E-07 60.9 18.1 164 162-353 11-201 (319)
129 KOG0731 AAA+-type ATPase conta 97.6 0.0022 4.7E-08 69.5 15.9 177 154-351 311-522 (774)
130 TIGR02640 gas_vesic_GvpN gas v 97.5 0.0021 4.5E-08 62.5 14.4 56 161-223 9-64 (262)
131 COG2812 DnaX DNA polymerase II 97.5 0.00035 7.6E-09 73.0 9.4 190 150-347 12-214 (515)
132 PRK10787 DNA-binding ATP-depen 97.5 0.0031 6.8E-08 70.4 17.1 158 154-323 322-506 (784)
133 PRK08118 topology modulation p 97.5 7.1E-05 1.5E-09 67.3 3.2 35 176-210 2-37 (167)
134 CHL00195 ycf46 Ycf46; Provisio 97.5 0.0013 2.8E-08 69.2 12.9 154 174-347 258-429 (489)
135 PRK08116 hypothetical protein; 97.5 0.00046 9.9E-09 67.2 8.9 101 176-291 115-220 (268)
136 PRK07993 DNA polymerase III su 97.5 0.004 8.8E-08 62.5 15.7 164 162-350 10-201 (334)
137 PF13177 DNA_pol3_delta2: DNA 97.5 0.00062 1.3E-08 60.9 8.9 137 158-311 1-162 (162)
138 PRK04132 replication factor C 97.5 0.0027 5.8E-08 70.7 15.5 155 183-353 574-731 (846)
139 PRK06964 DNA polymerase III su 97.5 0.0058 1.3E-07 61.3 16.6 104 241-353 115-225 (342)
140 COG3267 ExeA Type II secretory 97.5 0.0044 9.6E-08 58.0 14.4 181 172-356 48-248 (269)
141 PF05659 RPW8: Arabidopsis bro 97.4 0.0023 5.1E-08 55.6 11.7 110 2-127 3-113 (147)
142 PF04665 Pox_A32: Poxvirus A32 97.4 0.00039 8.4E-09 65.6 7.0 37 176-214 14-50 (241)
143 COG0466 Lon ATP-dependent Lon 97.4 0.0027 5.8E-08 67.6 13.3 157 153-323 322-508 (782)
144 PRK12608 transcription termina 97.4 0.0015 3.2E-08 65.5 10.8 100 164-264 121-230 (380)
145 TIGR03345 VI_ClpV1 type VI sec 97.3 0.0018 4E-08 73.1 12.7 106 154-266 566-680 (852)
146 PRK10865 protein disaggregatio 97.3 0.0075 1.6E-07 68.4 17.6 105 155-266 569-682 (857)
147 PRK12727 flagellar biosynthesi 97.3 0.0077 1.7E-07 63.1 15.9 88 175-264 350-438 (559)
148 TIGR01243 CDC48 AAA family ATP 97.3 0.0037 8E-08 70.2 14.7 172 154-347 453-657 (733)
149 COG1223 Predicted ATPase (AAA+ 97.3 0.0031 6.8E-08 58.9 11.4 172 154-347 121-319 (368)
150 COG0542 clpA ATP-binding subun 97.3 0.013 2.7E-07 64.2 17.6 113 156-276 493-617 (786)
151 TIGR02639 ClpA ATP-dependent C 97.3 0.0023 4.9E-08 71.7 12.4 102 155-266 455-565 (731)
152 TIGR02902 spore_lonB ATP-depen 97.3 0.0019 4E-08 69.3 11.1 49 151-199 62-110 (531)
153 KOG0743 AAA+-type ATPase [Post 97.3 0.041 8.8E-07 55.9 19.5 149 176-356 236-412 (457)
154 PRK07261 topology modulation p 97.3 0.0012 2.6E-08 59.7 8.2 34 177-210 2-36 (171)
155 COG1484 DnaC DNA replication p 97.2 0.00098 2.1E-08 64.2 7.8 81 166-265 98-178 (254)
156 PF10443 RNA12: RNA12 protein; 97.2 0.022 4.8E-07 57.8 17.3 192 159-360 1-285 (431)
157 PF00448 SRP54: SRP54-type pro 97.2 0.0023 4.9E-08 59.1 9.6 87 175-263 1-92 (196)
158 PRK08181 transposase; Validate 97.2 0.00068 1.5E-08 65.7 6.2 78 168-265 101-178 (269)
159 COG0470 HolB ATPase involved i 97.2 0.0038 8.2E-08 62.8 11.9 140 156-311 3-169 (325)
160 COG0593 DnaA ATPase involved i 97.2 0.0055 1.2E-07 62.3 12.8 181 174-374 112-315 (408)
161 PHA00729 NTP-binding motif con 97.2 0.0018 3.9E-08 60.4 8.6 36 165-200 7-42 (226)
162 PLN00020 ribulose bisphosphate 97.2 0.017 3.6E-07 57.6 15.7 30 173-202 146-175 (413)
163 TIGR02237 recomb_radB DNA repa 97.1 0.0022 4.9E-08 60.1 9.2 47 175-224 12-58 (209)
164 TIGR01243 CDC48 AAA family ATP 97.1 0.0026 5.7E-08 71.3 11.1 174 153-348 177-382 (733)
165 CHL00095 clpC Clp protease ATP 97.1 0.019 4.2E-07 65.1 18.0 106 154-266 509-623 (821)
166 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.0029 6.3E-08 60.5 9.9 90 174-264 18-125 (235)
167 KOG0735 AAA+-type ATPase [Post 97.1 0.0067 1.5E-07 64.4 12.2 153 175-346 431-608 (952)
168 KOG0734 AAA+-type ATPase conta 97.0 0.0025 5.5E-08 65.3 8.7 93 154-266 304-408 (752)
169 KOG0741 AAA+-type ATPase [Post 97.0 0.017 3.6E-07 59.4 14.4 159 174-358 537-717 (744)
170 PRK06526 transposase; Provisio 97.0 0.00087 1.9E-08 64.5 5.2 73 175-265 98-170 (254)
171 PF13207 AAA_17: AAA domain; P 97.0 0.0006 1.3E-08 57.7 3.6 24 177-200 1-24 (121)
172 PRK08939 primosomal protein Dn 97.0 0.0023 4.9E-08 63.5 8.1 116 158-291 135-260 (306)
173 TIGR03346 chaperone_ClpB ATP-d 97.0 0.0032 7E-08 71.6 10.4 106 154-266 565-679 (852)
174 KOG1969 DNA replication checkp 97.0 0.0022 4.7E-08 68.2 7.9 76 173-266 324-399 (877)
175 KOG0733 Nuclear AAA ATPase (VC 97.0 0.023 4.9E-07 59.5 14.9 94 153-266 189-294 (802)
176 PRK09183 transposase/IS protei 97.0 0.0021 4.5E-08 62.3 7.2 26 176-201 103-128 (259)
177 smart00763 AAA_PrkA PrkA AAA d 97.0 0.0011 2.4E-08 66.2 5.3 47 155-201 52-104 (361)
178 PRK12377 putative replication 96.9 0.0048 1E-07 59.1 9.3 73 175-264 101-173 (248)
179 KOG0733 Nuclear AAA ATPase (VC 96.9 0.02 4.3E-07 59.9 14.0 132 174-325 544-694 (802)
180 PRK08699 DNA polymerase III su 96.9 0.013 2.9E-07 58.5 12.6 155 174-349 20-202 (325)
181 PRK14722 flhF flagellar biosyn 96.9 0.0058 1.3E-07 61.8 9.8 88 175-264 137-225 (374)
182 KOG2004 Mitochondrial ATP-depe 96.9 0.032 7E-07 59.5 15.3 157 153-323 410-596 (906)
183 PRK06696 uridine kinase; Valid 96.9 0.0016 3.4E-08 61.8 5.3 44 158-201 2-48 (223)
184 TIGR03499 FlhF flagellar biosy 96.8 0.0066 1.4E-07 59.6 9.5 88 174-263 193-281 (282)
185 KOG2035 Replication factor C, 96.8 0.036 7.8E-07 52.5 13.6 207 153-373 12-259 (351)
186 TIGR02012 tigrfam_recA protein 96.8 0.0061 1.3E-07 60.4 9.1 84 174-264 54-143 (321)
187 PRK00771 signal recognition pa 96.8 0.069 1.5E-06 55.5 17.1 86 174-263 94-184 (437)
188 PRK10733 hflB ATP-dependent me 96.8 0.011 2.4E-07 65.0 12.0 149 176-346 186-356 (644)
189 KOG0730 AAA+-type ATPase [Post 96.8 0.03 6.4E-07 59.3 14.2 153 173-347 466-637 (693)
190 PRK07952 DNA replication prote 96.7 0.012 2.5E-07 56.3 10.3 89 162-266 84-174 (244)
191 PF01695 IstB_IS21: IstB-like 96.7 0.0069 1.5E-07 55.0 8.3 73 175-265 47-119 (178)
192 cd01393 recA_like RecA is a b 96.7 0.011 2.3E-07 56.2 10.0 49 174-222 18-70 (226)
193 KOG0739 AAA+-type ATPase [Post 96.7 0.026 5.6E-07 54.0 11.9 171 155-347 134-335 (439)
194 PRK09354 recA recombinase A; P 96.7 0.0079 1.7E-07 60.1 9.1 84 174-264 59-148 (349)
195 cd00983 recA RecA is a bacter 96.7 0.0077 1.7E-07 59.7 9.0 84 174-264 54-143 (325)
196 cd01120 RecA-like_NTPases RecA 96.7 0.011 2.5E-07 52.4 9.5 40 177-218 1-40 (165)
197 COG0542 clpA ATP-binding subun 96.7 0.0026 5.5E-08 69.5 6.0 160 151-323 167-346 (786)
198 KOG2228 Origin recognition com 96.7 0.065 1.4E-06 52.3 14.7 171 152-324 22-220 (408)
199 PRK11034 clpA ATP-dependent Cl 96.7 0.0051 1.1E-07 68.3 8.4 102 155-266 459-569 (758)
200 PRK09270 nucleoside triphospha 96.7 0.012 2.6E-07 56.0 9.9 31 172-202 30-60 (229)
201 PRK05541 adenylylsulfate kinas 96.7 0.0051 1.1E-07 55.9 7.0 36 174-211 6-41 (176)
202 TIGR02238 recomb_DMC1 meiotic 96.7 0.009 1.9E-07 59.4 9.1 58 175-233 96-157 (313)
203 TIGR01425 SRP54_euk signal rec 96.6 0.14 2.9E-06 53.0 17.5 38 174-213 99-136 (429)
204 PRK09361 radB DNA repair and r 96.6 0.0097 2.1E-07 56.5 8.5 45 175-222 23-67 (225)
205 PRK11889 flhF flagellar biosyn 96.6 0.024 5.1E-07 57.3 11.2 88 174-263 240-329 (436)
206 COG2884 FtsE Predicted ATPase 96.5 0.0057 1.2E-07 54.6 6.1 28 174-201 27-54 (223)
207 cd01133 F1-ATPase_beta F1 ATP 96.5 0.021 4.6E-07 55.1 10.5 89 176-265 70-174 (274)
208 PF08423 Rad51: Rad51; InterP 96.5 0.017 3.6E-07 55.9 9.9 89 175-264 38-143 (256)
209 PRK06921 hypothetical protein; 96.5 0.013 2.8E-07 57.0 9.0 72 174-264 116-187 (266)
210 PLN03187 meiotic recombination 96.5 0.016 3.4E-07 58.2 9.8 58 175-233 126-187 (344)
211 COG1102 Cmk Cytidylate kinase 96.5 0.004 8.7E-08 54.0 4.6 46 176-234 1-46 (179)
212 PRK07132 DNA polymerase III su 96.5 0.12 2.5E-06 51.1 15.4 166 164-352 6-184 (299)
213 cd02025 PanK Pantothenate kina 96.5 0.015 3.2E-07 54.9 8.9 41 177-217 1-41 (220)
214 KOG0736 Peroxisome assembly fa 96.5 0.086 1.9E-06 56.9 15.1 168 154-345 672-877 (953)
215 COG0464 SpoVK ATPases of the A 96.5 0.027 6E-07 60.2 12.0 152 174-345 275-445 (494)
216 PRK06547 hypothetical protein; 96.5 0.0046 1E-07 55.8 5.1 34 167-200 7-40 (172)
217 PRK04296 thymidine kinase; Pro 96.4 0.0039 8.5E-08 57.4 4.8 110 176-293 3-117 (190)
218 TIGR00554 panK_bact pantothena 96.4 0.018 4E-07 56.3 9.6 29 172-200 59-87 (290)
219 PRK07667 uridine kinase; Provi 96.4 0.0043 9.3E-08 57.3 5.0 38 164-201 4-43 (193)
220 PRK08533 flagellar accessory p 96.4 0.021 4.5E-07 54.3 9.7 52 175-231 24-75 (230)
221 TIGR03877 thermo_KaiC_1 KaiC d 96.4 0.025 5.4E-07 54.1 10.3 48 174-225 20-67 (237)
222 COG2607 Predicted ATPase (AAA+ 96.4 0.022 4.9E-07 52.8 9.0 114 153-292 59-183 (287)
223 COG1618 Predicted nucleotide k 96.4 0.0048 1.1E-07 53.5 4.5 32 175-207 5-36 (179)
224 cd01394 radB RadB. The archaea 96.4 0.017 3.6E-07 54.5 8.7 43 174-218 18-60 (218)
225 COG1419 FlhF Flagellar GTP-bin 96.4 0.037 8E-07 55.8 11.3 99 162-263 186-290 (407)
226 TIGR02236 recomb_radA DNA repa 96.3 0.024 5.2E-07 56.7 10.1 58 174-232 94-155 (310)
227 KOG0744 AAA+-type ATPase [Post 96.3 0.0097 2.1E-07 57.5 6.6 27 175-201 177-203 (423)
228 PRK12726 flagellar biosynthesi 96.3 0.028 6.1E-07 56.6 10.2 89 174-264 205-295 (407)
229 PF00485 PRK: Phosphoribulokin 96.3 0.0038 8.3E-08 57.7 3.9 26 177-202 1-26 (194)
230 PRK04301 radA DNA repair and r 96.3 0.026 5.6E-07 56.6 10.1 58 174-232 101-162 (317)
231 COG0194 Gmk Guanylate kinase [ 96.3 0.024 5.2E-07 50.8 8.5 24 176-199 5-28 (191)
232 PF13238 AAA_18: AAA domain; P 96.3 0.0037 8E-08 53.3 3.4 22 178-199 1-22 (129)
233 PF07728 AAA_5: AAA domain (dy 96.3 0.0098 2.1E-07 51.6 6.0 43 178-225 2-44 (139)
234 PHA02244 ATPase-like protein 96.3 0.025 5.3E-07 56.8 9.4 36 163-200 109-144 (383)
235 cd01121 Sms Sms (bacterial rad 96.3 0.021 4.6E-07 58.2 9.2 86 175-265 82-169 (372)
236 PRK12724 flagellar biosynthesi 96.2 0.017 3.7E-07 59.0 8.3 85 175-263 223-308 (432)
237 cd01124 KaiC KaiC is a circadi 96.2 0.016 3.5E-07 53.0 7.6 45 177-225 1-45 (187)
238 PTZ00035 Rad51 protein; Provis 96.2 0.032 6.9E-07 56.2 10.1 59 174-233 117-179 (337)
239 KOG0735 AAA+-type ATPase [Post 96.2 0.27 5.8E-06 52.8 16.8 153 175-349 701-872 (952)
240 COG1066 Sms Predicted ATP-depe 96.2 0.026 5.7E-07 56.5 9.1 84 176-265 94-179 (456)
241 PRK15455 PrkA family serine pr 96.2 0.0063 1.4E-07 64.1 5.1 49 153-201 75-129 (644)
242 TIGR00959 ffh signal recogniti 96.2 0.055 1.2E-06 56.0 11.8 27 174-200 98-124 (428)
243 PRK12723 flagellar biosynthesi 96.1 0.027 5.8E-07 57.6 9.3 89 174-264 173-264 (388)
244 PRK08233 hypothetical protein; 96.1 0.005 1.1E-07 56.2 3.7 26 175-200 3-28 (182)
245 PRK05480 uridine/cytidine kina 96.1 0.0057 1.2E-07 57.3 4.1 27 173-199 4-30 (209)
246 KOG1514 Origin recognition com 96.1 0.25 5.3E-06 53.0 16.2 168 154-324 396-590 (767)
247 PRK13531 regulatory ATPase Rav 96.1 0.0099 2.1E-07 61.7 6.0 50 155-206 21-70 (498)
248 PTZ00301 uridine kinase; Provi 96.1 0.0056 1.2E-07 57.1 3.9 26 175-200 3-28 (210)
249 TIGR02239 recomb_RAD51 DNA rep 96.1 0.026 5.7E-07 56.2 8.9 58 174-232 95-156 (316)
250 PRK04328 hypothetical protein; 96.1 0.032 6.9E-07 53.8 9.2 41 174-216 22-62 (249)
251 cd03115 SRP The signal recogni 96.1 0.026 5.6E-07 51.0 8.2 26 177-202 2-27 (173)
252 PRK05703 flhF flagellar biosyn 96.1 0.023 5.1E-07 59.0 8.7 86 175-263 221-308 (424)
253 cd01131 PilT Pilus retraction 96.1 0.011 2.4E-07 54.9 5.7 109 176-294 2-111 (198)
254 PF00006 ATP-synt_ab: ATP synt 96.1 0.025 5.5E-07 52.8 8.1 85 176-264 16-115 (215)
255 PRK06067 flagellar accessory p 96.1 0.04 8.7E-07 52.6 9.8 86 174-264 24-130 (234)
256 COG0468 RecA RecA/RadA recombi 96.1 0.048 1E-06 52.9 10.1 88 174-264 59-151 (279)
257 PF03308 ArgK: ArgK protein; 96.1 0.011 2.4E-07 55.9 5.5 62 162-223 14-77 (266)
258 cd00544 CobU Adenosylcobinamid 96.0 0.033 7.2E-07 50.0 8.5 80 178-263 2-82 (169)
259 TIGR02858 spore_III_AA stage I 96.0 0.014 3.1E-07 56.5 6.6 116 172-294 108-231 (270)
260 PRK05439 pantothenate kinase; 96.0 0.044 9.4E-07 54.1 9.9 45 173-217 84-128 (311)
261 PF12061 DUF3542: Protein of u 96.0 0.029 6.4E-07 53.7 8.2 74 18-93 299-373 (402)
262 cd02019 NK Nucleoside/nucleoti 96.0 0.0059 1.3E-07 45.8 3.0 23 177-199 1-23 (69)
263 PF13671 AAA_33: AAA domain; P 96.0 0.0062 1.3E-07 53.1 3.6 24 177-200 1-24 (143)
264 TIGR01359 UMP_CMP_kin_fam UMP- 96.0 0.018 3.9E-07 52.6 6.8 24 177-200 1-24 (183)
265 PF00154 RecA: recA bacterial 96.0 0.066 1.4E-06 53.0 11.0 85 175-266 53-143 (322)
266 PRK14721 flhF flagellar biosyn 96.0 0.047 1E-06 56.2 10.4 87 175-263 191-278 (420)
267 PF01583 APS_kinase: Adenylyls 96.0 0.0096 2.1E-07 52.3 4.6 36 175-212 2-37 (156)
268 PLN03186 DNA repair protein RA 96.0 0.035 7.6E-07 55.8 9.2 58 175-233 123-184 (342)
269 TIGR01817 nifA Nif-specific re 96.0 0.045 9.8E-07 59.1 10.8 50 151-200 193-244 (534)
270 COG1875 NYN ribonuclease and A 96.0 0.042 9E-07 54.2 9.2 43 155-197 225-267 (436)
271 TIGR00235 udk uridine kinase. 96.0 0.0077 1.7E-07 56.3 4.1 28 173-200 4-31 (207)
272 COG0563 Adk Adenylate kinase a 95.9 0.013 2.8E-07 53.1 5.4 25 177-201 2-26 (178)
273 PRK14723 flhF flagellar biosyn 95.9 0.062 1.4E-06 59.2 11.5 59 175-233 185-244 (767)
274 PRK10867 signal recognition pa 95.9 0.044 9.6E-07 56.8 9.9 29 173-201 98-126 (433)
275 PRK06762 hypothetical protein; 95.9 0.0074 1.6E-07 54.2 3.8 25 175-199 2-26 (166)
276 PRK14974 cell division protein 95.9 0.079 1.7E-06 53.1 11.3 89 174-264 139-232 (336)
277 PRK06995 flhF flagellar biosyn 95.9 0.045 9.7E-07 57.4 9.8 60 175-234 256-316 (484)
278 COG1703 ArgK Putative periplas 95.9 0.016 3.5E-07 55.6 5.8 64 164-227 38-103 (323)
279 COG0572 Udk Uridine kinase [Nu 95.9 0.0086 1.9E-07 55.3 3.9 29 174-202 7-35 (218)
280 KOG0728 26S proteasome regulat 95.8 0.22 4.8E-06 46.5 12.7 131 173-323 179-331 (404)
281 CHL00206 ycf2 Ycf2; Provisiona 95.8 0.082 1.8E-06 62.9 12.2 28 174-201 1629-1656(2281)
282 PF12775 AAA_7: P-loop contain 95.8 0.0061 1.3E-07 59.4 2.9 88 165-265 24-111 (272)
283 COG4608 AppF ABC-type oligopep 95.8 0.044 9.5E-07 52.2 8.4 119 174-296 38-174 (268)
284 PRK06835 DNA replication prote 95.8 0.06 1.3E-06 53.9 9.9 36 176-213 184-219 (329)
285 TIGR01069 mutS2 MutS2 family p 95.8 0.011 2.3E-07 66.2 4.8 186 173-374 320-522 (771)
286 PF10236 DAP3: Mitochondrial r 95.8 0.75 1.6E-05 45.8 17.5 47 304-350 258-306 (309)
287 PF03205 MobB: Molybdopterin g 95.8 0.019 4E-07 49.9 5.3 39 176-215 1-39 (140)
288 COG0541 Ffh Signal recognition 95.7 1.5 3.1E-05 44.9 19.2 59 174-234 99-158 (451)
289 PF13481 AAA_25: AAA domain; P 95.7 0.033 7.1E-07 51.3 7.4 41 176-216 33-81 (193)
290 TIGR00064 ftsY signal recognit 95.7 0.087 1.9E-06 51.4 10.5 40 173-214 70-109 (272)
291 KOG0729 26S proteasome regulat 95.7 0.062 1.3E-06 50.5 8.8 92 153-264 176-280 (435)
292 cd03247 ABCC_cytochrome_bd The 95.7 0.031 6.7E-07 50.8 6.9 25 176-200 29-53 (178)
293 PF14532 Sigma54_activ_2: Sigm 95.7 0.0047 1E-07 53.7 1.4 41 161-201 5-47 (138)
294 TIGR03878 thermo_KaiC_2 KaiC d 95.7 0.055 1.2E-06 52.5 8.9 40 174-215 35-74 (259)
295 TIGR02974 phageshock_pspF psp 95.7 0.081 1.7E-06 53.2 10.4 44 157-200 2-47 (329)
296 PRK03839 putative kinase; Prov 95.7 0.01 2.2E-07 54.1 3.5 24 177-200 2-25 (180)
297 TIGR01360 aden_kin_iso1 adenyl 95.6 0.011 2.4E-07 54.2 3.7 26 174-199 2-27 (188)
298 PF00910 RNA_helicase: RNA hel 95.6 0.009 2E-07 49.3 2.8 24 178-201 1-24 (107)
299 cd00561 CobA_CobO_BtuR ATP:cor 95.6 0.16 3.4E-06 45.0 10.7 116 176-293 3-139 (159)
300 COG1121 ZnuC ABC-type Mn/Zn tr 95.6 0.052 1.1E-06 51.6 8.1 23 176-198 31-53 (254)
301 PRK11823 DNA repair protein Ra 95.6 0.042 9E-07 57.7 8.3 86 175-265 80-167 (446)
302 cd03223 ABCD_peroxisomal_ALDP 95.6 0.06 1.3E-06 48.3 8.3 26 175-200 27-52 (166)
303 PRK00131 aroK shikimate kinase 95.6 0.012 2.6E-07 53.2 3.8 27 174-200 3-29 (175)
304 KOG0652 26S proteasome regulat 95.6 0.58 1.3E-05 44.1 14.5 52 149-200 166-230 (424)
305 PTZ00494 tuzin-like protein; P 95.6 1.3 2.7E-05 45.5 17.9 163 151-323 368-544 (664)
306 cd03281 ABC_MSH5_euk MutS5 hom 95.6 0.013 2.9E-07 54.9 4.0 24 175-198 29-52 (213)
307 PRK05917 DNA polymerase III su 95.6 0.28 6.1E-06 47.9 13.2 129 163-310 6-154 (290)
308 PRK00409 recombination and DNA 95.6 0.044 9.6E-07 61.5 8.7 180 173-374 325-527 (782)
309 cd01135 V_A-ATPase_B V/A-type 95.6 0.12 2.5E-06 49.9 10.4 90 176-265 70-177 (276)
310 cd03214 ABC_Iron-Siderophores_ 95.5 0.049 1.1E-06 49.6 7.6 115 175-294 25-160 (180)
311 COG0465 HflB ATP-dependent Zn 95.5 0.18 3.9E-06 53.9 12.7 174 153-348 149-356 (596)
312 COG1428 Deoxynucleoside kinase 95.5 0.03 6.5E-07 51.2 5.9 47 175-226 4-50 (216)
313 cd02117 NifH_like This family 95.5 0.016 3.5E-07 54.4 4.4 26 176-201 1-26 (212)
314 PF08433 KTI12: Chromatin asso 95.5 0.039 8.5E-07 53.6 7.1 26 176-201 2-27 (270)
315 TIGR00708 cobA cob(I)alamin ad 95.5 0.087 1.9E-06 47.2 8.6 118 175-293 5-141 (173)
316 PRK09519 recA DNA recombinatio 95.4 0.057 1.2E-06 59.7 8.9 84 174-264 59-148 (790)
317 PRK12597 F0F1 ATP synthase sub 95.4 0.082 1.8E-06 55.1 9.6 88 176-264 144-247 (461)
318 PRK04040 adenylate kinase; Pro 95.4 0.015 3.2E-07 53.4 3.7 26 175-200 2-27 (188)
319 TIGR02655 circ_KaiC circadian 95.4 0.071 1.5E-06 56.7 9.3 86 174-264 262-363 (484)
320 TIGR00750 lao LAO/AO transport 95.4 0.057 1.2E-06 53.6 8.1 38 165-202 22-61 (300)
321 COG4240 Predicted kinase [Gene 95.4 0.11 2.5E-06 47.7 9.0 82 172-254 47-133 (300)
322 PRK08927 fliI flagellum-specif 95.4 0.11 2.5E-06 53.6 10.2 88 174-265 157-259 (442)
323 PF06309 Torsin: Torsin; Inte 95.4 0.034 7.4E-07 46.6 5.3 44 156-199 27-77 (127)
324 PF06745 KaiC: KaiC; InterPro 95.3 0.042 9.2E-07 52.1 6.7 49 174-225 18-66 (226)
325 PRK08972 fliI flagellum-specif 95.3 0.063 1.4E-06 55.3 8.2 87 175-265 162-263 (444)
326 cd02023 UMPK Uridine monophosp 95.3 0.012 2.6E-07 54.6 2.9 23 177-199 1-23 (198)
327 PRK13765 ATP-dependent proteas 95.3 0.032 7E-07 60.7 6.5 78 151-232 28-105 (637)
328 TIGR02322 phosphon_PhnN phosph 95.3 0.015 3.3E-07 52.9 3.5 25 176-200 2-26 (179)
329 PF13086 AAA_11: AAA domain; P 95.3 0.046 1E-06 51.8 7.0 34 164-199 8-41 (236)
330 PF03215 Rad17: Rad17 cell cyc 95.3 0.022 4.7E-07 60.5 5.1 56 154-213 19-79 (519)
331 PF13245 AAA_19: Part of AAA d 95.3 0.044 9.5E-07 41.9 5.4 26 174-199 9-35 (76)
332 TIGR00416 sms DNA repair prote 95.3 0.072 1.6E-06 56.0 8.9 86 175-265 94-181 (454)
333 KOG1532 GTPase XAB1, interacts 95.3 0.022 4.7E-07 53.8 4.2 62 174-235 18-88 (366)
334 PRK09435 membrane ATPase/prote 95.3 0.16 3.5E-06 50.7 10.8 39 164-202 43-83 (332)
335 PRK10751 molybdopterin-guanine 95.3 0.02 4.3E-07 51.4 3.9 29 174-202 5-33 (173)
336 PF00625 Guanylate_kin: Guanyl 95.3 0.026 5.6E-07 51.6 4.8 38 175-214 2-39 (183)
337 cd00227 CPT Chloramphenicol (C 95.2 0.017 3.6E-07 52.4 3.5 25 176-200 3-27 (175)
338 PRK13236 nitrogenase reductase 95.2 0.028 6E-07 55.8 5.3 43 172-216 3-45 (296)
339 PRK00625 shikimate kinase; Pro 95.2 0.018 3.8E-07 52.0 3.5 24 177-200 2-25 (173)
340 cd02024 NRK1 Nicotinamide ribo 95.2 0.015 3.1E-07 53.2 3.0 23 177-199 1-23 (187)
341 PRK06217 hypothetical protein; 95.2 0.018 3.9E-07 52.7 3.6 34 177-211 3-38 (183)
342 COG3640 CooC CO dehydrogenase 95.2 0.042 9.2E-07 50.9 5.8 42 177-219 2-43 (255)
343 PHA02774 E1; Provisional 95.2 0.044 9.5E-07 58.0 6.7 50 162-215 420-470 (613)
344 PRK06002 fliI flagellum-specif 95.2 0.1 2.2E-06 54.1 9.1 87 176-265 166-265 (450)
345 cd01134 V_A-ATPase_A V/A-type 95.2 0.15 3.2E-06 50.9 9.8 47 176-226 158-205 (369)
346 PRK11608 pspF phage shock prot 95.1 0.049 1.1E-06 54.7 6.8 46 154-199 6-53 (326)
347 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.1 0.055 1.2E-06 47.3 6.2 26 175-200 26-51 (144)
348 TIGR00150 HI0065_YjeE ATPase, 95.1 0.04 8.6E-07 47.1 5.1 27 175-201 22-48 (133)
349 cd02020 CMPK Cytidine monophos 95.1 0.017 3.8E-07 50.4 3.1 24 177-200 1-24 (147)
350 cd02021 GntK Gluconate kinase 95.1 0.017 3.6E-07 50.9 2.9 23 177-199 1-23 (150)
351 KOG3347 Predicted nucleotide k 95.1 0.021 4.6E-07 48.8 3.3 35 175-216 7-41 (176)
352 TIGR03263 guanyl_kin guanylate 95.1 0.017 3.6E-07 52.7 3.0 24 176-199 2-25 (180)
353 PRK15429 formate hydrogenlyase 95.1 0.068 1.5E-06 59.6 8.4 48 153-200 375-424 (686)
354 cd02028 UMPK_like Uridine mono 95.1 0.018 3.9E-07 52.4 3.1 25 177-201 1-25 (179)
355 PRK13235 nifH nitrogenase redu 95.1 0.027 5.7E-07 55.3 4.5 40 176-217 2-41 (274)
356 COG0467 RAD55 RecA-superfamily 95.0 0.035 7.5E-07 54.0 5.3 43 173-217 21-63 (260)
357 PF02562 PhoH: PhoH-like prote 95.0 0.027 5.9E-07 52.0 4.2 47 164-212 10-56 (205)
358 PRK13232 nifH nitrogenase redu 95.0 0.027 5.8E-07 55.2 4.5 26 176-201 2-27 (273)
359 PRK08149 ATP synthase SpaL; Va 95.0 0.13 2.8E-06 53.1 9.4 87 175-265 151-252 (428)
360 COG0529 CysC Adenylylsulfate k 95.0 0.042 9.1E-07 48.6 5.0 31 172-202 20-50 (197)
361 PRK00889 adenylylsulfate kinas 95.0 0.028 6E-07 51.0 4.2 28 174-201 3-30 (175)
362 TIGR03881 KaiC_arch_4 KaiC dom 95.0 0.24 5.2E-06 47.0 10.8 41 174-216 19-59 (229)
363 PRK15453 phosphoribulokinase; 95.0 0.16 3.5E-06 49.1 9.3 28 173-200 3-30 (290)
364 PRK14527 adenylate kinase; Pro 95.0 0.027 5.8E-07 51.9 4.0 29 173-201 4-32 (191)
365 PTZ00088 adenylate kinase 1; P 95.0 0.029 6.4E-07 53.1 4.3 25 176-200 7-31 (229)
366 PRK05800 cobU adenosylcobinami 95.0 0.086 1.9E-06 47.4 7.1 81 176-263 2-85 (170)
367 PRK00300 gmk guanylate kinase; 94.9 0.024 5.1E-07 52.9 3.7 25 175-199 5-29 (205)
368 cd01125 repA Hexameric Replica 94.9 0.15 3.3E-06 48.8 9.3 24 177-200 3-26 (239)
369 TIGR02030 BchI-ChlI magnesium 94.9 0.044 9.5E-07 55.0 5.7 47 153-199 3-49 (337)
370 cd00071 GMPK Guanosine monopho 94.9 0.02 4.3E-07 49.6 2.7 23 177-199 1-23 (137)
371 PF08298 AAA_PrkA: PrkA AAA do 94.9 0.042 9.1E-07 54.5 5.3 48 154-201 61-114 (358)
372 PRK14737 gmk guanylate kinase; 94.9 0.025 5.4E-07 51.8 3.5 26 174-199 3-28 (186)
373 PLN02165 adenylate isopentenyl 94.9 0.035 7.6E-07 55.0 4.7 30 171-200 39-68 (334)
374 PF07726 AAA_3: ATPase family 94.9 0.017 3.7E-07 48.6 2.2 25 178-202 2-26 (131)
375 PF03193 DUF258: Protein of un 94.9 0.042 9E-07 48.6 4.7 34 163-199 26-59 (161)
376 TIGR00390 hslU ATP-dependent p 94.8 0.082 1.8E-06 54.0 7.3 46 156-201 14-73 (441)
377 PRK03846 adenylylsulfate kinas 94.8 0.044 9.5E-07 50.8 5.1 30 172-201 21-50 (198)
378 TIGR01041 ATP_syn_B_arch ATP s 94.8 0.15 3.3E-06 53.2 9.4 90 176-265 142-249 (458)
379 cd02029 PRK_like Phosphoribulo 94.8 0.13 2.8E-06 49.4 8.1 25 177-201 1-25 (277)
380 TIGR01040 V-ATPase_V1_B V-type 94.8 0.18 4E-06 52.1 9.9 89 176-264 142-257 (466)
381 PRK13230 nitrogenase reductase 94.8 0.038 8.2E-07 54.3 4.8 41 176-218 2-42 (279)
382 CHL00081 chlI Mg-protoporyphyr 94.8 0.037 7.9E-07 55.6 4.7 49 152-200 15-63 (350)
383 TIGR01650 PD_CobS cobaltochela 94.8 0.089 1.9E-06 52.1 7.3 61 155-222 46-106 (327)
384 COG1936 Predicted nucleotide k 94.8 0.023 5E-07 50.1 2.8 21 176-196 1-21 (180)
385 cd00820 PEPCK_HprK Phosphoenol 94.8 0.027 5.9E-07 46.0 3.1 22 175-196 15-36 (107)
386 TIGR00176 mobB molybdopterin-g 94.8 0.041 9E-07 48.7 4.5 35 177-212 1-35 (155)
387 TIGR03305 alt_F1F0_F1_bet alte 94.8 0.15 3.3E-06 52.9 9.1 89 176-265 139-243 (449)
388 COG1126 GlnQ ABC-type polar am 94.7 0.026 5.7E-07 51.7 3.2 35 175-212 28-62 (240)
389 PRK13947 shikimate kinase; Pro 94.7 0.027 5.8E-07 50.8 3.3 25 177-201 3-27 (171)
390 TIGR01313 therm_gnt_kin carboh 94.7 0.022 4.8E-07 50.9 2.7 22 178-199 1-22 (163)
391 cd01672 TMPK Thymidine monopho 94.7 0.087 1.9E-06 48.6 6.8 26 176-201 1-26 (200)
392 TIGR00073 hypB hydrogenase acc 94.7 0.035 7.5E-07 51.9 4.1 31 170-200 17-47 (207)
393 PTZ00185 ATPase alpha subunit; 94.7 0.25 5.3E-06 51.7 10.4 90 176-265 190-300 (574)
394 PRK13949 shikimate kinase; Pro 94.7 0.03 6.6E-07 50.4 3.5 24 177-200 3-26 (169)
395 COG1763 MobB Molybdopterin-gua 94.7 0.031 6.7E-07 49.4 3.4 29 175-203 2-30 (161)
396 PRK13975 thymidylate kinase; P 94.7 0.031 6.8E-07 51.6 3.7 26 176-201 3-28 (196)
397 PF08477 Miro: Miro-like prote 94.7 0.03 6.6E-07 46.9 3.3 24 178-201 2-25 (119)
398 PRK14530 adenylate kinase; Pro 94.7 0.03 6.4E-07 52.7 3.6 25 176-200 4-28 (215)
399 PF02374 ArsA_ATPase: Anion-tr 94.7 0.059 1.3E-06 53.5 5.8 47 176-224 2-48 (305)
400 PRK14738 gmk guanylate kinase; 94.6 0.032 6.9E-07 52.1 3.7 26 173-198 11-36 (206)
401 PRK10078 ribose 1,5-bisphospho 94.6 0.026 5.7E-07 51.7 3.1 24 176-199 3-26 (186)
402 cd01136 ATPase_flagellum-secre 94.6 0.18 3.9E-06 50.3 9.0 87 175-265 69-170 (326)
403 KOG0738 AAA+-type ATPase [Post 94.6 0.16 3.5E-06 50.6 8.4 28 175-202 245-272 (491)
404 PF03266 NTPase_1: NTPase; In 94.6 0.03 6.4E-07 50.3 3.3 24 178-201 2-25 (168)
405 PRK06851 hypothetical protein; 94.6 0.49 1.1E-05 47.9 12.2 41 173-214 212-252 (367)
406 COG1224 TIP49 DNA helicase TIP 94.6 0.076 1.6E-06 52.2 6.1 55 153-207 38-97 (450)
407 PRK06936 type III secretion sy 94.6 0.2 4.3E-06 51.8 9.5 87 175-265 162-263 (439)
408 COG0003 ArsA Predicted ATPase 94.6 0.075 1.6E-06 52.8 6.2 49 175-225 2-50 (322)
409 PRK12339 2-phosphoglycerate ki 94.6 0.037 7.9E-07 51.1 3.8 26 175-200 3-28 (197)
410 PF05970 PIF1: PIF1-like helic 94.6 0.099 2.1E-06 53.5 7.3 41 162-202 9-49 (364)
411 cd00464 SK Shikimate kinase (S 94.6 0.032 6.9E-07 49.2 3.3 23 178-200 2-24 (154)
412 PRK05342 clpX ATP-dependent pr 94.5 0.086 1.9E-06 54.5 6.8 46 155-200 72-133 (412)
413 TIGR00764 lon_rel lon-related 94.5 0.085 1.8E-06 57.5 7.1 76 153-232 17-92 (608)
414 TIGR02655 circ_KaiC circadian 94.5 0.21 4.6E-06 53.2 9.9 86 174-263 20-129 (484)
415 TIGR01351 adk adenylate kinase 94.5 0.15 3.2E-06 47.8 7.8 23 178-200 2-24 (210)
416 PF00158 Sigma54_activat: Sigm 94.5 0.15 3.3E-06 45.8 7.6 44 157-200 2-47 (168)
417 TIGR00041 DTMP_kinase thymidyl 94.5 0.11 2.4E-06 47.9 7.0 27 176-202 4-30 (195)
418 PRK05022 anaerobic nitric oxid 94.5 0.11 2.5E-06 55.6 8.0 62 153-216 186-249 (509)
419 COG1124 DppF ABC-type dipeptid 94.5 0.042 9.2E-07 51.3 3.9 26 176-201 34-59 (252)
420 PRK05057 aroK shikimate kinase 94.5 0.038 8.2E-07 50.0 3.6 26 175-200 4-29 (172)
421 KOG0737 AAA+-type ATPase [Post 94.5 0.41 8.8E-06 47.6 10.8 29 174-202 126-154 (386)
422 PRK12678 transcription termina 94.5 0.15 3.2E-06 53.9 8.3 85 176-264 417-513 (672)
423 cd01132 F1_ATPase_alpha F1 ATP 94.4 0.19 4.1E-06 48.5 8.4 93 176-272 70-180 (274)
424 PRK05922 type III secretion sy 94.4 0.26 5.6E-06 51.0 9.9 87 175-265 157-258 (434)
425 cd02027 APSK Adenosine 5'-phos 94.4 0.033 7.2E-07 49.0 3.1 24 177-200 1-24 (149)
426 PRK10463 hydrogenase nickel in 94.4 0.066 1.4E-06 52.1 5.3 92 168-265 97-195 (290)
427 KOG0651 26S proteasome regulat 94.4 0.11 2.3E-06 50.3 6.5 29 174-202 165-193 (388)
428 PF13521 AAA_28: AAA domain; P 94.4 0.033 7.2E-07 49.8 3.0 21 178-198 2-22 (163)
429 TIGR03498 FliI_clade3 flagella 94.4 0.17 3.7E-06 52.2 8.5 88 175-265 140-241 (418)
430 COG0714 MoxR-like ATPases [Gen 94.4 0.11 2.4E-06 52.4 7.1 64 156-226 26-89 (329)
431 TIGR03496 FliI_clade1 flagella 94.4 0.16 3.5E-06 52.4 8.3 87 175-265 137-238 (411)
432 KOG0726 26S proteasome regulat 94.3 0.29 6.3E-06 46.9 9.1 93 151-264 182-288 (440)
433 PRK00698 tmk thymidylate kinas 94.3 0.11 2.5E-06 48.2 6.7 27 176-202 4-30 (205)
434 TIGR02868 CydC thiol reductant 94.3 0.14 3.1E-06 55.3 8.4 26 174-199 360-385 (529)
435 PRK14529 adenylate kinase; Pro 94.3 0.18 4E-06 47.4 7.9 83 177-264 2-86 (223)
436 COG1136 SalX ABC-type antimicr 94.3 0.037 8.1E-07 51.7 3.2 25 176-200 32-56 (226)
437 PRK13407 bchI magnesium chelat 94.3 0.058 1.3E-06 54.0 4.8 48 152-199 6-53 (334)
438 PRK09099 type III secretion sy 94.3 0.21 4.6E-06 51.8 8.9 89 174-265 162-264 (441)
439 PLN02200 adenylate kinase fami 94.3 0.046 1E-06 52.0 3.9 27 174-200 42-68 (234)
440 PRK06731 flhF flagellar biosyn 94.3 0.31 6.6E-06 47.3 9.5 89 174-264 74-164 (270)
441 cd01878 HflX HflX subfamily. 94.3 0.12 2.6E-06 48.0 6.7 27 173-199 39-65 (204)
442 PRK13695 putative NTPase; Prov 94.2 0.063 1.4E-06 48.6 4.6 34 177-211 2-35 (174)
443 PLN02796 D-glycerate 3-kinase 94.2 0.28 6.1E-06 49.0 9.4 28 174-201 99-126 (347)
444 PRK07594 type III secretion sy 94.2 0.2 4.4E-06 51.8 8.7 88 174-265 154-256 (433)
445 COG3598 RepA RecA-family ATPas 94.2 0.17 3.7E-06 49.2 7.4 88 177-264 91-204 (402)
446 cd01122 GP4d_helicase GP4d_hel 94.2 0.39 8.4E-06 46.9 10.4 51 176-229 31-81 (271)
447 PRK04182 cytidylate kinase; Pr 94.2 0.043 9.4E-07 49.8 3.5 24 177-200 2-25 (180)
448 TIGR02173 cyt_kin_arch cytidyl 94.2 0.046 9.9E-07 49.2 3.5 24 177-200 2-25 (171)
449 PRK13234 nifH nitrogenase redu 94.1 0.072 1.6E-06 52.8 5.1 40 175-216 4-43 (295)
450 COG4088 Predicted nucleotide k 94.1 0.041 8.9E-07 49.9 3.0 27 176-202 2-28 (261)
451 PRK09825 idnK D-gluconate kina 94.1 0.048 1E-06 49.5 3.5 25 176-200 4-28 (176)
452 TIGR01039 atpD ATP synthase, F 94.1 0.32 7E-06 50.5 9.8 89 176-265 144-248 (461)
453 PRK09280 F0F1 ATP synthase sub 94.1 0.3 6.6E-06 50.8 9.7 89 176-265 145-249 (463)
454 TIGR01420 pilT_fam pilus retra 94.1 0.13 2.9E-06 52.1 7.0 111 174-293 121-231 (343)
455 PF03029 ATP_bind_1: Conserved 94.1 0.044 9.6E-07 52.3 3.4 34 180-215 1-34 (238)
456 COG1116 TauB ABC-type nitrate/ 94.1 0.043 9.4E-07 51.5 3.2 25 175-199 29-53 (248)
457 cd00984 DnaB_C DnaB helicase C 94.1 0.46 1E-05 45.4 10.5 50 176-228 14-63 (242)
458 PRK13948 shikimate kinase; Pro 94.1 0.057 1.2E-06 49.1 3.9 28 173-200 8-35 (182)
459 PF06068 TIP49: TIP49 C-termin 94.0 0.073 1.6E-06 53.1 4.7 53 153-205 23-80 (398)
460 cd03116 MobB Molybdenum is an 94.0 0.076 1.7E-06 47.2 4.5 27 176-202 2-28 (159)
461 TIGR01287 nifH nitrogenase iro 94.0 0.073 1.6E-06 52.2 4.8 39 176-216 1-39 (275)
462 PRK13946 shikimate kinase; Pro 94.0 0.051 1.1E-06 49.7 3.4 27 175-201 10-36 (184)
463 PRK06761 hypothetical protein; 94.0 0.051 1.1E-06 52.9 3.5 33 176-209 4-36 (282)
464 PLN02348 phosphoribulokinase 93.9 0.061 1.3E-06 54.5 4.2 30 172-201 46-75 (395)
465 TIGR03880 KaiC_arch_3 KaiC dom 93.9 0.29 6.4E-06 46.2 8.7 41 174-216 15-55 (224)
466 PRK11388 DNA-binding transcrip 93.9 0.39 8.4E-06 53.2 10.9 48 153-200 324-373 (638)
467 PRK09302 circadian clock prote 93.9 0.33 7.1E-06 52.2 10.0 85 175-264 273-373 (509)
468 PF02367 UPF0079: Uncharacteri 93.9 0.11 2.4E-06 43.7 5.0 36 165-202 7-42 (123)
469 PRK06793 fliI flagellum-specif 93.9 0.22 4.8E-06 51.5 8.2 89 175-266 156-258 (432)
470 COG0237 CoaE Dephospho-CoA kin 93.9 0.15 3.3E-06 47.0 6.4 23 175-197 2-24 (201)
471 PRK04196 V-type ATP synthase s 93.9 0.29 6.2E-06 51.3 9.0 89 176-265 144-251 (460)
472 PRK14493 putative bifunctional 93.8 0.072 1.6E-06 51.9 4.4 35 176-213 2-36 (274)
473 PRK14531 adenylate kinase; Pro 93.8 0.059 1.3E-06 49.3 3.6 25 176-200 3-27 (183)
474 PRK13768 GTPase; Provisional 93.8 0.1 2.2E-06 50.4 5.4 36 176-213 3-38 (253)
475 COG2019 AdkA Archaeal adenylat 93.8 0.062 1.3E-06 47.1 3.4 25 175-199 4-28 (189)
476 PRK14532 adenylate kinase; Pro 93.8 0.053 1.2E-06 49.7 3.2 23 178-200 3-25 (188)
477 cd03287 ABC_MSH3_euk MutS3 hom 93.8 0.04 8.6E-07 51.9 2.4 24 174-197 30-53 (222)
478 PRK07276 DNA polymerase III su 93.8 2.6 5.7E-05 41.3 15.0 68 253-321 103-173 (290)
479 PF07693 KAP_NTPase: KAP famil 93.8 0.26 5.6E-06 49.6 8.5 42 161-202 3-47 (325)
480 CHL00060 atpB ATP synthase CF1 93.8 0.26 5.7E-06 51.5 8.5 89 176-265 162-273 (494)
481 PRK10416 signal recognition pa 93.7 0.074 1.6E-06 53.1 4.3 30 173-202 112-141 (318)
482 TIGR03574 selen_PSTK L-seryl-t 93.7 0.05 1.1E-06 52.5 3.0 25 177-201 1-25 (249)
483 PF00005 ABC_tran: ABC transpo 93.7 0.049 1.1E-06 47.0 2.7 25 176-200 12-36 (137)
484 KOG2170 ATPase of the AAA+ sup 93.7 0.23 5E-06 47.9 7.3 97 156-266 84-190 (344)
485 PRK10875 recD exonuclease V su 93.7 0.16 3.5E-06 55.2 7.2 53 175-227 167-220 (615)
486 cd01428 ADK Adenylate kinase ( 93.7 0.057 1.2E-06 49.7 3.3 23 178-200 2-24 (194)
487 KOG1051 Chaperone HSP104 and r 93.7 0.4 8.7E-06 53.6 10.2 101 156-266 564-672 (898)
488 PRK08356 hypothetical protein; 93.6 0.063 1.4E-06 49.6 3.4 22 175-196 5-26 (195)
489 COG4136 ABC-type uncharacteriz 93.6 0.1 2.2E-06 44.8 4.3 37 176-212 29-65 (213)
490 PF07724 AAA_2: AAA domain (Cd 93.6 0.15 3.2E-06 46.0 5.6 43 175-218 3-45 (171)
491 PF13555 AAA_29: P-loop contai 93.6 0.084 1.8E-06 38.3 3.2 23 177-199 25-47 (62)
492 PRK05688 fliI flagellum-specif 93.6 0.45 9.8E-06 49.4 9.8 87 175-265 168-269 (451)
493 PRK03731 aroL shikimate kinase 93.5 0.069 1.5E-06 48.1 3.5 25 176-200 3-27 (171)
494 cd01983 Fer4_NifH The Fer4_Nif 93.5 0.072 1.6E-06 42.4 3.3 25 177-201 1-25 (99)
495 PRK05537 bifunctional sulfate 93.5 0.13 2.8E-06 55.7 6.0 48 154-201 369-418 (568)
496 PRK07721 fliI flagellum-specif 93.5 0.4 8.6E-06 50.0 9.3 89 173-264 156-258 (438)
497 PHA02530 pseT polynucleotide k 93.5 0.068 1.5E-06 53.1 3.7 24 176-199 3-26 (300)
498 TIGR00017 cmk cytidylate kinas 93.5 0.076 1.7E-06 49.9 3.7 25 176-200 3-27 (217)
499 COG2274 SunT ABC-type bacterio 93.5 0.28 6E-06 54.3 8.5 26 175-200 499-524 (709)
500 TIGR03497 FliI_clade2 flagella 93.4 0.31 6.8E-06 50.3 8.4 88 174-265 136-238 (413)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-72 Score=614.11 Aligned_cols=512 Identities=25% Similarity=0.412 Sum_probs=419.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhc-----------------hhcc
Q 043056 38 NLKAEVENLKSERVSTQHKVDEAKRKGEEIEENVENWLARANNVIVEADKFTDDEATAN-----------------KRCF 100 (559)
Q Consensus 38 ~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~v~~Wl~~v~~~ayd~ed~ld~~~~~~-----------------~~~~ 100 (559)
+.++.+..|+++|..++.++++++.++ .....+..|...+++++|+++|.++.+.... .-|+
T Consensus 25 ~~~~~i~~Lk~~L~~l~~~l~d~~a~~-~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~ 103 (889)
T KOG4658|consen 25 GKDNYILELKENLKALQSALEDLDAKR-DDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCL 103 (889)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhh
Confidence 777889999999999999999999987 4477899999999999999999998764211 1111
Q ss_pred cCcC-CChhhhhHHHHHHHHHHHHHHHHHhcCCCcccccc-CCCccccccccCCCCCccchHHHHHHHHHHcCCCCceEE
Q 043056 101 KGLC-PNLKTRRRLSKEAERQKEAAVKVREARRFDRISYC-TAPEDIRLIFNKDYLPFESRMFTLRNILSALEDPDVNML 178 (559)
Q Consensus 101 ~~~~-~~~~~~~~i~~~i~~~~~~l~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gR~~~~~~l~~~L~~~~~~vi 178 (559)
.+.+ ......+.+++++-++...++.+...+.|..+... .+.+.....+...... +|.+..++++.+.|.+++..++
T Consensus 104 ~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~~iv 182 (889)
T KOG4658|consen 104 CGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDVGIV 182 (889)
T ss_pred hhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCCCEE
Confidence 1111 23344455666666666666666555556555432 1112222222222233 9999999999999997777999
Q ss_pred EEEcCCCCcHHHHHHHHHHHhc-ccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCCh---hhhHHHHHHHHHcCC
Q 043056 179 GIYGMGGIGKTMLAEEVARKVK-SDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESE---SGRANSLFKRIKAEK 254 (559)
Q Consensus 179 ~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~---~~~~~~l~~~l~~~k 254 (559)
+|+||||+||||||++++|+.. ++++|+.++||+||+.++...++.+|++.++........ .+....+.+.|. +|
T Consensus 183 ~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~-~k 261 (889)
T KOG4658|consen 183 GIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLE-GK 261 (889)
T ss_pred EEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhc-cC
Confidence 9999999999999999999998 899999999999999999999999999999874443322 344455555555 89
Q ss_pred eEEEEEeCCCcccccchhcCCCCCCCCCcEEEEEecCcchhccCCCCCCeeecCCCCHHHHHHHHHHHhCCC--CCCcch
Q 043056 255 KILIILDNIWENLDLRVVGIPHGDGHKDCKVLLTARSLDVLSGKMDSRPNFSIGVLNEEEAWNLFKKMAGDY--IEGSEF 332 (559)
Q Consensus 255 r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~--~~~~~~ 332 (559)
||||||||||+..+|+.++.++|....||+|++|||++.|+...++....+++..|+++|||.||++.++.. ...+.+
T Consensus 262 rfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i 341 (889)
T KOG4658|consen 262 RFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDI 341 (889)
T ss_pred ceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccH
Confidence 999999999999999999999999999999999999999987668888999999999999999999999844 344568
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHhcC-ChHHHHHHHHHhcCCCCCCccchHHHHHHHHHHhhcCCCChhHHHHHHHhc
Q 043056 333 QSVARDVAKECAGLPVSVVTIARALRNK-RLFEWKDALEQLRRPSSTNFKDIQQTAYKAIELSYNKLEGEELKNIFLLIG 411 (559)
Q Consensus 333 ~~~~~~I~~~c~GlPLai~~~~~~L~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~lk~cfl~~s 411 (559)
+++|++++++|+|+|||++++|++|+.+ +..+|+.+.+.+.+....+.++..+.++.+|.+||++||++ +|.||+|||
T Consensus 342 ~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~-lK~CFLyca 420 (889)
T KOG4658|consen 342 EELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEE-LKSCFLYCA 420 (889)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHH-HHHHHHhhc
Confidence 9999999999999999999999999988 88899999999988766666667899999999999999966 999999999
Q ss_pred cCC---CCChHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHccccccccC-CCcceEEecHHHHHHHHHHhc----
Q 043056 412 YTA---IASIDALLMCGMGLGLFQGVNKMEVARARVRTLVHKLKASCMLLDHIS-KNEEFFSMHDVVRDIAISIAS---- 483 (559)
Q Consensus 412 ~fp---~i~~~~Li~~w~aeg~i~~~~~~~~~~~~~~~~i~~L~~~sll~~~~~-~~~~~~~mHdlv~d~a~~~~~---- 483 (559)
+|| .|+++.|+.+|+||||+.+....+.+++.+.+++.+|+.++|+..... ++..+|+|||+|||+|.++++
T Consensus 421 lFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~ 500 (889)
T KOG4658|consen 421 LFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGK 500 (889)
T ss_pred cCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccc
Confidence 999 788899999999999998866667788999999999999999987653 234689999999999999999
Q ss_pred -ccccceEeccccccCcccccccccccCceEEEecCCCCccCCCCcccCCcchhhhhcccCC-CCccCChHHHhcccC
Q 043056 484 -REQNALTATNEQVGGFREWSDKSAVKHYTSIVLHDIKANVLPEVVECPQLKLLFIHADKES-SSLTIPNNFFKRMIQ 559 (559)
Q Consensus 484 -~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~-~~~~ip~~~f~~m~~ 559 (559)
+++.+ +.++. ++.+.+....|..+||++++++....++.+..+++|+| |+...+. .+..+|..||.+||.
T Consensus 501 ~~e~~i--v~~~~--~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~t--Lll~~n~~~l~~is~~ff~~m~~ 572 (889)
T KOG4658|consen 501 QEENQI--VSDGV--GLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRT--LLLQRNSDWLLEISGEFFRSLPL 572 (889)
T ss_pred cccceE--EECCc--CccccccccchhheeEEEEeccchhhccCCCCCCccce--EEEeecchhhhhcCHHHHhhCcc
Confidence 66633 33322 45556777788899999999999999999999999999 5544554 488999999999973
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.2e-44 Score=359.26 Aligned_cols=273 Identities=30% Similarity=0.504 Sum_probs=216.3
Q ss_pred hHHHHHHHHHHcCC--CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcC
Q 043056 159 RMFTLRNILSALED--PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHE 236 (559)
Q Consensus 159 R~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~ 236 (559)
|+.++++|.++|.+ ++.++|+|+|+||+||||||.+++++...+++|+.++|++++...+...++..|+.+++.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78899999999986 7899999999999999999999999877778899999999999999999999999999877432
Q ss_pred ----CChhhhHHHHHHHHHcCCeEEEEEeCCCcccccchhcCCCCCCCCCcEEEEEecCcchhccCCCCCCeeecCCCCH
Q 043056 237 ----ESESGRANSLFKRIKAEKKILIILDNIWENLDLRVVGIPHGDGHKDCKVLLTARSLDVLSGKMDSRPNFSIGVLNE 312 (559)
Q Consensus 237 ----~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~va~~~~~~~~~~~l~~L~~ 312 (559)
.+.......+.+.+. ++++||||||||+...|+.+...++....||+||||||+..++.........|++++|+.
T Consensus 81 ~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred cccccccccccccchhhhc-cccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 233445556666655 679999999999999999888888777789999999999988643323367999999999
Q ss_pred HHHHHHHHHHhCCCC--CCcchHHHHHHHHHHhCCChHHHHHHHHHHhcC-ChHHHHHHHHHhcCCCCCCccchHHHHHH
Q 043056 313 EEAWNLFKKMAGDYI--EGSEFQSVARDVAKECAGLPVSVVTIARALRNK-RLFEWKDALEQLRRPSSTNFKDIQQTAYK 389 (559)
Q Consensus 313 ~ea~~Lf~~~~~~~~--~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~i~~ 389 (559)
++|++||.+.++... ..+.+.+.+++|+++|+|+||||+++|++|+.+ +..+|..+++.+....... .+....+..
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~-~~~~~~~~~ 238 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRES-RDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCS-SGSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 999999999998443 345567789999999999999999999999754 7889999998876554321 224688999
Q ss_pred HHHHhhcCCCChhHHHHHHHhccCC---CCChHHHHHHHhhccccccc
Q 043056 390 AIELSYNKLEGEELKNIFLLIGYTA---IASIDALLMCGMGLGLFQGV 434 (559)
Q Consensus 390 ~l~~sy~~L~~~~lk~cfl~~s~fp---~i~~~~Li~~w~aeg~i~~~ 434 (559)
++.+||+.||++ +|.||+|||+|| .|+.+.|+++|++||||...
T Consensus 239 ~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 239 ALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 999999999997 899999999999 67899999999999998753
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=7.6e-40 Score=377.90 Aligned_cols=354 Identities=19% Similarity=0.234 Sum_probs=260.3
Q ss_pred CCCCCccchHHHHHHHHHHcC--CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEe---CCC---------
Q 043056 151 KDYLPFESRMFTLRNILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEV---SQN--------- 216 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~---s~~--------- 216 (559)
.+..+++|++..++++..+|. .++.++|+|+||||+||||||+.+|+.... +|+..+|+.- +..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~--~F~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR--QFQSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh--cCCeEEEeeccccccchhhcccccc
Confidence 345679999999999988875 567899999999999999999999998764 4988887742 111
Q ss_pred --cC-HHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcccccchhcCCCCCCCCCcEEEEEecCcc
Q 043056 217 --QD-IRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENLDLRVVGIPHGDGHKDCKVLLTARSLD 293 (559)
Q Consensus 217 --~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~ 293 (559)
++ ...++.+++..+...... .......+.+.+. +||+||||||||+..+|+.+.....+.++||+||||||+..
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~~--~~~~~~~~~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~ 335 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKDI--KIYHLGAMEERLK-HRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKH 335 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCCc--ccCCHHHHHHHHh-CCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHH
Confidence 01 123444444443221111 1111234555555 79999999999999999998776666788999999999999
Q ss_pred hhccCCCCCCeeecCCCCHHHHHHHHHHHhCCCC-CCcchHHHHHHHHHHhCCChHHHHHHHHHHhcCChHHHHHHHHHh
Q 043056 294 VLSGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYI-EGSEFQSVARDVAKECAGLPVSVVTIARALRNKRLFEWKDALEQL 372 (559)
Q Consensus 294 va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~-~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~~l 372 (559)
++. ..+...+|.++.|++++||+||+++||... .+.++.+++++|+++|+|+||||+++|++|++++..+|+.+++++
T Consensus 336 vl~-~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L 414 (1153)
T PLN03210 336 FLR-AHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRL 414 (1153)
T ss_pred HHH-hcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 874 345567999999999999999999998543 345678999999999999999999999999999999999999998
Q ss_pred cCCCCCCccchHHHHHHHHHHhhcCCCChhHHHHHHHhccCC-CCChHHHHHHHhhcccccccchHHHHHHHHHHHHHHH
Q 043056 373 RRPSSTNFKDIQQTAYKAIELSYNKLEGEELKNIFLLIGYTA-IASIDALLMCGMGLGLFQGVNKMEVARARVRTLVHKL 451 (559)
Q Consensus 373 ~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~lk~cfl~~s~fp-~i~~~~Li~~w~aeg~i~~~~~~~~~~~~~~~~i~~L 451 (559)
.... ..++..+|++||++|+++..|.||+++|+|+ +...+. +..|++.+.... ...++.|
T Consensus 415 ~~~~-------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~-v~~~l~~~~~~~-----------~~~l~~L 475 (1153)
T PLN03210 415 RNGL-------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVND-IKLLLANSDLDV-----------NIGLKNL 475 (1153)
T ss_pred HhCc-------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHH-HHHHHHhcCCCc-----------hhChHHH
Confidence 7532 4578999999999998744799999999998 666654 566776654321 2237889
Q ss_pred HHccccccccCCCcceEEecHHHHHHHHHHhcccccceEeccccccCcccccc---------cccccCceEEEecCCCCc
Q 043056 452 KASCMLLDHISKNEEFFSMHDVVRDIAISIASREQNALTATNEQVGGFREWSD---------KSAVKHYTSIVLHDIKAN 522 (559)
Q Consensus 452 ~~~sll~~~~~~~~~~~~mHdlv~d~a~~~~~~e~~~~~~~~~~~~~~~~~~~---------~~~~~~~r~lsl~~~~~~ 522 (559)
+++||++... ..+.|||++|+++++++.++.. ..+. +..-|.. .....+++++++.....+
T Consensus 476 ~~ksLi~~~~----~~~~MHdLl~~~~r~i~~~~~~----~~~~--r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~ 545 (1153)
T PLN03210 476 VDKSLIHVRE----DIVEMHSLLQEMGKEIVRAQSN----EPGE--REFLVDAKDICDVLEDNTGTKKVLGITLDIDEID 545 (1153)
T ss_pred HhcCCEEEcC----CeEEhhhHHHHHHHHHHHhhcC----CCCc--ceeEeCHHHHHHHHHhCcccceeeEEEeccCccc
Confidence 9999997643 4699999999999999977641 1110 1111211 122356788888766654
Q ss_pred cCCCC----cccCCcchhhhh
Q 043056 523 VLPEV----VECPQLKLLFIH 539 (559)
Q Consensus 523 ~l~~~----~~~~~Lr~L~l~ 539 (559)
.+... ..|++|+.|.+.
T Consensus 546 ~~~i~~~aF~~m~~L~~L~~~ 566 (1153)
T PLN03210 546 ELHIHENAFKGMRNLLFLKFY 566 (1153)
T ss_pred eeeecHHHHhcCccccEEEEe
Confidence 43221 246777776554
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.67 E-value=1.1e-14 Score=167.51 Aligned_cols=297 Identities=12% Similarity=0.166 Sum_probs=186.1
Q ss_pred CCCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeC-CCcCHHHHHHHHHHH
Q 043056 151 KDYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVS-QNQDIRKLQGEIADK 229 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~ 229 (559)
....+++-|..-++.|-+ ....+++.|+||+|.||||++.++... +..++|+++. ...+...++..++..
T Consensus 11 ~~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~ 81 (903)
T PRK04841 11 VRLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAA 81 (903)
T ss_pred CCccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHH
Confidence 334456777766665543 245689999999999999999998853 2268999996 445666777777776
Q ss_pred hCCCCcC--------------CChhhhHHHHHHHHHc-CCeEEEEEeCCCccc--ccc-hhcCCCCCCCCCcEEEEEecC
Q 043056 230 LGLKFHE--------------ESESGRANSLFKRIKA-EKKILIILDNIWENL--DLR-VVGIPHGDGHKDCKVLLTARS 291 (559)
Q Consensus 230 l~~~~~~--------------~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~--~~~-~l~~~~~~~~~gs~IivTTR~ 291 (559)
++..... .+.......+...+.. +.+++|||||++... ... .+...+.....+.++|||||.
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~ 161 (903)
T PRK04841 82 LQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRN 161 (903)
T ss_pred HHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 6421111 0111223344555543 678999999997643 122 222222223456688899998
Q ss_pred cchhc--cCCCCCCeeecC----CCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHhcCChHHH
Q 043056 292 LDVLS--GKMDSRPNFSIG----VLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTIARALRNKRLFEW 365 (559)
Q Consensus 292 ~~va~--~~~~~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~w 365 (559)
..... ..........+. +|+.+|+..||....+.... .+.+.+|.+.|+|+|+++..++..+...+.. .
T Consensus 162 ~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~ 236 (903)
T PRK04841 162 LPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQNNSS-L 236 (903)
T ss_pred CCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-h
Confidence 43211 000112244555 99999999999987764332 3457889999999999999988777643210 0
Q ss_pred HHHHHHhcCCCCCCccchHHHHHHHHH-HhhcCCCChhHHHHHHHhccCCCCChHHHHHHHhhcccccccchHHHHHHHH
Q 043056 366 KDALEQLRRPSSTNFKDIQQTAYKAIE-LSYNKLEGEELKNIFLLIGYTAIASIDALLMCGMGLGLFQGVNKMEVARARV 444 (559)
Q Consensus 366 ~~~l~~l~~~~~~~~~~~~~~i~~~l~-~sy~~L~~~~lk~cfl~~s~fp~i~~~~Li~~w~aeg~i~~~~~~~~~~~~~ 444 (559)
......+.... ...+...+. -.++.||++ .+.++...|+++.++.+.+-... | ....
T Consensus 237 ~~~~~~~~~~~-------~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~~~~~~l~~~l~---~-----------~~~~ 294 (903)
T PRK04841 237 HDSARRLAGIN-------ASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLRSMNDALIVRVT---G-----------EENG 294 (903)
T ss_pred hhhhHhhcCCC-------chhHHHHHHHHHHhcCCHH-HHHHHHHhcccccCCHHHHHHHc---C-----------CCcH
Confidence 11111111100 122444433 347899998 99999999999977755443221 1 1112
Q ss_pred HHHHHHHHHccccccccCCCcceEEecHHHHHHHHHHhc
Q 043056 445 RTLVHKLKASCMLLDHISKNEEFFSMHDVVRDIAISIAS 483 (559)
Q Consensus 445 ~~~i~~L~~~sll~~~~~~~~~~~~mHdlv~d~a~~~~~ 483 (559)
.+.+++|...+++.....++..+|++|++++++++....
T Consensus 295 ~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 295 QMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred HHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHH
Confidence 467888888898754322222589999999999998763
No 5
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.54 E-value=3.6e-13 Score=142.31 Aligned_cols=300 Identities=15% Similarity=0.168 Sum_probs=195.5
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCC-CcCHHHHHHHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQ-NQDIRKLQGEIAD 228 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~ 228 (559)
|..+...+-|..-++.|-. ..+.+.+.|..|+|.|||||+.+....... =..+.|+++.. +.++..+...++.
T Consensus 15 P~~~~~~v~R~rL~~~L~~---~~~~RL~li~APAGfGKttl~aq~~~~~~~---~~~v~Wlslde~dndp~rF~~yLi~ 88 (894)
T COG2909 15 PVRPDNYVVRPRLLDRLRR---ANDYRLILISAPAGFGKTTLLAQWRELAAD---GAAVAWLSLDESDNDPARFLSYLIA 88 (894)
T ss_pred CCCcccccccHHHHHHHhc---CCCceEEEEeCCCCCcHHHHHHHHHHhcCc---ccceeEeecCCccCCHHHHHHHHHH
Confidence 3334556667665555543 357899999999999999999999874332 34689999965 5577888888888
Q ss_pred HhCCCCcCCC--------------hhhhHHHHHHHHHc-CCeEEEEEeCCCccc--ccc-hhcCCCCCCCCCcEEEEEec
Q 043056 229 KLGLKFHEES--------------ESGRANSLFKRIKA-EKKILIILDNIWENL--DLR-VVGIPHGDGHKDCKVLLTAR 290 (559)
Q Consensus 229 ~l~~~~~~~~--------------~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~--~~~-~l~~~~~~~~~gs~IivTTR 290 (559)
.++.-.+... ....+..+...+.. .+++.|||||..-.. ... .+...+.....+-..|+|||
T Consensus 89 al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR 168 (894)
T COG2909 89 ALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSR 168 (894)
T ss_pred HHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEec
Confidence 7764322211 11234445554432 578999999986432 222 22222333456788999999
Q ss_pred Ccchhcc--CCCCCCeeecC----CCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHhcC-ChH
Q 043056 291 SLDVLSG--KMDSRPNFSIG----VLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTIARALRNK-RLF 363 (559)
Q Consensus 291 ~~~va~~--~~~~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~-~~~ 363 (559)
+..-... ..-....++++ .|+.+|+.++|....+...+. .-.+.+.+..+|.+-|+..++=.+++. +.+
T Consensus 169 ~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~----~~~~~L~~~teGW~~al~L~aLa~~~~~~~~ 244 (894)
T COG2909 169 SRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDA----ADLKALYDRTEGWAAALQLIALALRNNTSAE 244 (894)
T ss_pred cCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCCh----HHHHHHHhhcccHHHHHHHHHHHccCCCcHH
Confidence 8754210 11112344443 489999999999987654443 347789999999999999999888833 332
Q ss_pred HHHHHHHHhcCCCCCCccchHHHHHH-HHHHhhcCCCChhHHHHHHHhccCCCCChHHHHHHHhhcccccccchHHHHHH
Q 043056 364 EWKDALEQLRRPSSTNFKDIQQTAYK-AIELSYNKLEGEELKNIFLLIGYTAIASIDALLMCGMGLGLFQGVNKMEVARA 442 (559)
Q Consensus 364 ~w~~~l~~l~~~~~~~~~~~~~~i~~-~l~~sy~~L~~~~lk~cfl~~s~fp~i~~~~Li~~w~aeg~i~~~~~~~~~~~ 442 (559)
.--..+.- ..+.+.. ...--++.||++ +|..++-||+++.+.-+-..++ ..+.
T Consensus 245 q~~~~LsG-----------~~~~l~dYL~eeVld~Lp~~-l~~FLl~~svl~~f~~eL~~~L--------------tg~~ 298 (894)
T COG2909 245 QSLRGLSG-----------AASHLSDYLVEEVLDRLPPE-LRDFLLQTSVLSRFNDELCNAL--------------TGEE 298 (894)
T ss_pred HHhhhccc-----------hHHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHHHhhHHHHHHH--------------hcCC
Confidence 22221110 0111221 233457899998 9999999999885554432221 1233
Q ss_pred HHHHHHHHHHHccccccccCCCcceEEecHHHHHHHHHHhccc
Q 043056 443 RVRTLVHKLKASCMLLDHISKNEEFFSMHDVVRDIAISIASRE 485 (559)
Q Consensus 443 ~~~~~i~~L~~~sll~~~~~~~~~~~~mHdlv~d~a~~~~~~e 485 (559)
.+...+++|.+++|+...-++...+|+.|+++.||.+.....+
T Consensus 299 ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 299 NGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred cHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccc
Confidence 4567799999999987554444489999999999999887653
No 6
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.35 E-value=1.7e-10 Score=113.14 Aligned_cols=183 Identities=16% Similarity=0.187 Sum_probs=117.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHH----
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFK---- 248 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~---- 248 (559)
.....+.|+|++|+|||||++.+++...... + ..+|+ +....+..+++..|+..++.+....+.......+..
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE 117 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 4456899999999999999999998865321 1 22333 233457788999999998876544433333333332
Q ss_pred HHHcCCeEEEEEeCCCccc--ccchhcC---CCCCCCCCcEEEEEecCcch--hc------cCCCCCCeeecCCCCHHHH
Q 043056 249 RIKAEKKILIILDNIWENL--DLRVVGI---PHGDGHKDCKVLLTARSLDV--LS------GKMDSRPNFSIGVLNEEEA 315 (559)
Q Consensus 249 ~l~~~kr~LlVlDdv~~~~--~~~~l~~---~~~~~~~gs~IivTTR~~~v--a~------~~~~~~~~~~l~~L~~~ea 315 (559)
....+++.+||+||++... .++.+.. ..........|++|....-. .. ........+.+++|+.+|.
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 2335788999999998753 3343321 11112223345555543211 00 0011234678999999999
Q ss_pred HHHHHHHhCCCC---CCcchHHHHHHHHHHhCCChHHHHHHHHHHh
Q 043056 316 WNLFKKMAGDYI---EGSEFQSVARDVAKECAGLPVSVVTIARALR 358 (559)
Q Consensus 316 ~~Lf~~~~~~~~---~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~ 358 (559)
.+++...+.... ...-..+..+.|++.|+|.|..|..++..+.
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~ 243 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLL 243 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHH
Confidence 999988764211 1122357889999999999999999988763
No 7
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.33 E-value=3.2e-10 Score=117.67 Aligned_cols=288 Identities=15% Similarity=0.080 Sum_probs=168.1
Q ss_pred CCCccchHHHHHHHHHHcC----CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHH
Q 043056 153 YLPFESRMFTLRNILSALE----DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIAD 228 (559)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (559)
+..+.||++++++|...+. ......+.|+|++|+|||++++.+++........-.++++++....+...++..|+.
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 3568999999999988874 334567889999999999999999998765432345777887777788899999999
Q ss_pred HhCCC-Cc--CCChhhhHHHHHHHHHc-CCeEEEEEeCCCccc------ccchhcCCCCCCCCC--cEEEEEecCcchhc
Q 043056 229 KLGLK-FH--EESESGRANSLFKRIKA-EKKILIILDNIWENL------DLRVVGIPHGDGHKD--CKVLLTARSLDVLS 296 (559)
Q Consensus 229 ~l~~~-~~--~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~------~~~~l~~~~~~~~~g--s~IivTTR~~~va~ 296 (559)
++... .. ..+..+....+.+.+.. +++.+||||+++... .+..+...+. ...+ ..+|.++....+..
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~-~~~~~~v~vI~i~~~~~~~~ 187 (394)
T PRK00411 109 QLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE-EYPGARIGVIGISSDLTFLY 187 (394)
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh-ccCCCeEEEEEEECCcchhh
Confidence 98652 11 12223444555555543 567899999997643 1222222211 1123 33566666543321
Q ss_pred c------CCCCCCeeecCCCCHHHHHHHHHHHhCCCC-CCcchHHHHHHHHHHh----CCChHHHHHHHHHHh-----cC
Q 043056 297 G------KMDSRPNFSIGVLNEEEAWNLFKKMAGDYI-EGSEFQSVARDVAKEC----AGLPVSVVTIARALR-----NK 360 (559)
Q Consensus 297 ~------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~-~~~~~~~~~~~I~~~c----~GlPLai~~~~~~L~-----~~ 360 (559)
. ..-....+.+.|++.++..+++..++.... ...-..+..+.|++.+ |..+.|+.++-.+.. +.
T Consensus 188 ~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~ 267 (394)
T PRK00411 188 ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGS 267 (394)
T ss_pred hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence 1 011134789999999999999998763211 0011123344444444 556777777654322 11
Q ss_pred ---ChHHHHHHHHHhcCCCCCCccchHHHHHHHHHHhhcCCCChhHHHHHHHhcc-CC----CCChHHHHHHH--hhccc
Q 043056 361 ---RLFEWKDALEQLRRPSSTNFKDIQQTAYKAIELSYNKLEGEELKNIFLLIGY-TA----IASIDALLMCG--MGLGL 430 (559)
Q Consensus 361 ---~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~lk~cfl~~s~-fp----~i~~~~Li~~w--~aeg~ 430 (559)
+......+.+.+. .....-.+..||.+ .|..+..++- .. .+....+...- +++.+
T Consensus 268 ~~I~~~~v~~a~~~~~--------------~~~~~~~~~~L~~~-~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~ 332 (394)
T PRK00411 268 RKVTEEDVRKAYEKSE--------------IVHLSEVLRTLPLH-EKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEEL 332 (394)
T ss_pred CCcCHHHHHHHHHHHH--------------HHHHHHHHhcCCHH-HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHc
Confidence 4555555555431 22234567899987 4544433332 11 33444443221 11111
Q ss_pred ccccchHHHHHHHHHHHHHHHHHccccccc
Q 043056 431 FQGVNKMEVARARVRTLVHKLKASCMLLDH 460 (559)
Q Consensus 431 i~~~~~~~~~~~~~~~~i~~L~~~sll~~~ 460 (559)
+.. ......+.++++.|...|++...
T Consensus 333 --~~~--~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 333 --GYE--PRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred --CCC--cCcHHHHHHHHHHHHhcCCeEEE
Confidence 000 01234566788888889988643
No 8
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.32 E-value=8.2e-11 Score=131.25 Aligned_cols=310 Identities=16% Similarity=0.236 Sum_probs=184.7
Q ss_pred CccchHHHHHHHHHHcC---CCCceEEEEEcCCCCcHHHHHHHHHHHhccc-CCCCeEEEEEeCCCc---CHHHHHHHHH
Q 043056 155 PFESRMFTLRNILSALE---DPDVNMLGIYGMGGIGKTMLAEEVARKVKSD-KLFDQVVFVEVSQNQ---DIRKLQGEIA 227 (559)
Q Consensus 155 ~~~gR~~~~~~l~~~L~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~s~~~---~~~~~~~~i~ 227 (559)
+++||+.+++.|...+. .+...++.+.|.+|+|||+|+++|......+ +.|-.-.+-....+. ...+.+++++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 36899999999998876 5666799999999999999999999987654 222111111112221 1223333333
Q ss_pred HHh-------------------CCCCc---------------CC--------Chhhh-----HHHHHHHHHcCCeEEEEE
Q 043056 228 DKL-------------------GLKFH---------------EE--------SESGR-----ANSLFKRIKAEKKILIIL 260 (559)
Q Consensus 228 ~~l-------------------~~~~~---------------~~--------~~~~~-----~~~l~~~l~~~kr~LlVl 260 (559)
.++ +.... .. ..... ...+.....+.|+.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 332 11100 00 00000 112222333567999999
Q ss_pred eCC-Ccccc-c---chhcCCCCCCC-CCcEEE--EEecCc-chhccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcc
Q 043056 261 DNI-WENLD-L---RVVGIPHGDGH-KDCKVL--LTARSL-DVLSGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSE 331 (559)
Q Consensus 261 Ddv-~~~~~-~---~~l~~~~~~~~-~gs~Ii--vTTR~~-~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~ 331 (559)
||+ |-+.. + +.+.....-+. .-..|. .|.+.. ............|.|.||+..+...|.....+.....+
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~~- 239 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLLP- 239 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccccc-
Confidence 999 43322 1 11111111000 011222 233322 11122334567999999999999999999997533322
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHhcC-------ChHHHHHHHHHhcCCCCCCccchHHHHHHHHHHhhcCCCChhHH
Q 043056 332 FQSVARDVAKECAGLPVSVVTIARALRNK-------RLFEWKDALEQLRRPSSTNFKDIQQTAYKAIELSYNKLEGEELK 404 (559)
Q Consensus 332 ~~~~~~~I~~~c~GlPLai~~~~~~L~~~-------~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~lk 404 (559)
.+....|+++..|+|+.+..+-..+... +...|..-...+.. .+..+.+...+..-.+.||.. .+
T Consensus 240 -~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~------~~~~~~vv~~l~~rl~kL~~~-t~ 311 (849)
T COG3899 240 -APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI------LATTDAVVEFLAARLQKLPGT-TR 311 (849)
T ss_pred -chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC------chhhHHHHHHHHHHHhcCCHH-HH
Confidence 4568899999999999999999998842 34444433333222 122344777899999999998 89
Q ss_pred HHHHHhccCC-CCChHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHcccccccc------CC-Ccc-eEEecHHHH
Q 043056 405 NIFLLIGYTA-IASIDALLMCGMGLGLFQGVNKMEVARARVRTLVHKLKASCMLLDHI------SK-NEE-FFSMHDVVR 475 (559)
Q Consensus 405 ~cfl~~s~fp-~i~~~~Li~~w~aeg~i~~~~~~~~~~~~~~~~i~~L~~~sll~~~~------~~-~~~-~~~mHdlv~ 475 (559)
..+-..|++. .|+.+.|...+-. .....+..+.+.|.... +.+.. .. ... +-..|++|+
T Consensus 312 ~Vl~~AA~iG~~F~l~~La~l~~~-----------~~~~~a~~l~~al~e~l-I~~~~~~yr~~~~~~~~~Y~F~H~~vq 379 (849)
T COG3899 312 EVLKAAACIGNRFDLDTLAALAED-----------SPALEAAALLDALQEGL-ILPLSETYRFGSNVDIATYKFLHDRVQ 379 (849)
T ss_pred HHHHHHHHhCccCCHHHHHHHHhh-----------chHHHHHHHHHHhHhhc-eeccccccccccccchhhHHhhHHHHH
Confidence 9999999998 9999988776631 23334444555555544 43321 11 111 225699999
Q ss_pred HHHHHHhccc
Q 043056 476 DIAISIASRE 485 (559)
Q Consensus 476 d~a~~~~~~e 485 (559)
+.|-+...+.
T Consensus 380 qaaY~~i~~~ 389 (849)
T COG3899 380 QAAYNLIPES 389 (849)
T ss_pred HHHhccCchh
Confidence 9888766544
No 9
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.31 E-value=1.8e-09 Score=110.91 Aligned_cols=288 Identities=15% Similarity=0.119 Sum_probs=169.1
Q ss_pred CCccchHHHHHHHHHHcC----CCCceEEEEEcCCCCcHHHHHHHHHHHhcccC-CC---CeEEEEEeCCCcCHHHHHHH
Q 043056 154 LPFESRMFTLRNILSALE----DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDK-LF---DQVVFVEVSQNQDIRKLQGE 225 (559)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f---~~~~wv~~s~~~~~~~~~~~ 225 (559)
..+.||+.++++|..++. ......+.|+|++|+|||++++.+++...... .. -..+|+++....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 468999999999999875 34456899999999999999999998764321 11 24678888777788889999
Q ss_pred HHHHh---CCCCcC--CChhhhHHHHHHHHH-cCCeEEEEEeCCCccc-ccc----hhcCCC-CCCC--CCcEEEEEecC
Q 043056 226 IADKL---GLKFHE--ESESGRANSLFKRIK-AEKKILIILDNIWENL-DLR----VVGIPH-GDGH--KDCKVLLTARS 291 (559)
Q Consensus 226 i~~~l---~~~~~~--~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~-~~~----~l~~~~-~~~~--~gs~IivTTR~ 291 (559)
|+.++ +..... .+..+....+.+.+. .+++++||||+++... ..+ .+.... .... ....+|.+|..
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND 174 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC
Confidence 99988 332221 122334455555554 3568999999997662 111 221110 1111 23345555544
Q ss_pred cchhc----cC--CCCCCeeecCCCCHHHHHHHHHHHhCC----CCCCcchHHHHHHHHHHhCCChH-HHHHHHHHHh--
Q 043056 292 LDVLS----GK--MDSRPNFSIGVLNEEEAWNLFKKMAGD----YIEGSEFQSVARDVAKECAGLPV-SVVTIARALR-- 358 (559)
Q Consensus 292 ~~va~----~~--~~~~~~~~l~~L~~~ea~~Lf~~~~~~----~~~~~~~~~~~~~I~~~c~GlPL-ai~~~~~~L~-- 358 (559)
..... .. .-....+.++|++.++..+++..++.. ..-.++..+.+.+++..+.|.|- |+..+-.+..
T Consensus 175 ~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a 254 (365)
T TIGR02928 175 LKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIA 254 (365)
T ss_pred cchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 33211 00 011256889999999999999988741 11223333455667777789884 4443322221
Q ss_pred ---c--C-ChHHHHHHHHHhcCCCCCCccchHHHHHHHHHHhhcCCCChhHHHHHHHhccC---C--CCChHHHHHHHh-
Q 043056 359 ---N--K-RLFEWKDALEQLRRPSSTNFKDIQQTAYKAIELSYNKLEGEELKNIFLLIGYT---A--IASIDALLMCGM- 426 (559)
Q Consensus 359 ---~--~-~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~lk~cfl~~s~f---p--~i~~~~Li~~w~- 426 (559)
+ . +.+....+.+.+. .....-++..||.+ .+.++..+... . .+....+...+-
T Consensus 255 ~~~~~~~it~~~v~~a~~~~~--------------~~~~~~~i~~l~~~-~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 255 EREGAERVTEDHVEKAQEKIE--------------KDRLLELIRGLPTH-SKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHcCCCCCCHHHHHHHHHHHH--------------HHHHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 1 1 4444444444321 12234566789887 56555444321 1 455555554331
Q ss_pred -hcccccccchHHHHHHHHHHHHHHHHHccccccc
Q 043056 427 -GLGLFQGVNKMEVARARVRTLVHKLKASCMLLDH 460 (559)
Q Consensus 427 -aeg~i~~~~~~~~~~~~~~~~i~~L~~~sll~~~ 460 (559)
++.+ . ........+.++++.|...|++...
T Consensus 320 ~~~~~-~---~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 320 VCEDI-G---VDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHhc-C---CCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 1111 0 0112346677888999999999754
No 10
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.29 E-value=1.8e-11 Score=117.28 Aligned_cols=194 Identities=19% Similarity=0.289 Sum_probs=105.1
Q ss_pred ccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHH---------HH
Q 043056 156 FESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQG---------EI 226 (559)
Q Consensus 156 ~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~---------~i 226 (559)
|+||+.+++.|.+++..+....+.|+|+.|+|||+|++.+.+.....+ + .++|+..........+.. .+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-C-cEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 789999999999988766678999999999999999999999874321 1 344444433332221111 11
Q ss_pred HHHhCCCCc-----------CCChhhhHHHHHHHHHc-CCeEEEEEeCCCccc-ccc---h----h---cCCCCCCCCCc
Q 043056 227 ADKLGLKFH-----------EESESGRANSLFKRIKA-EKKILIILDNIWENL-DLR---V----V---GIPHGDGHKDC 283 (559)
Q Consensus 227 ~~~l~~~~~-----------~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~-~~~---~----l---~~~~~~~~~gs 283 (559)
...+..... ..........+.+.+.. +++++||+||+.... ... . + ...... ....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~ 157 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQNV 157 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TTE
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cCCc
Confidence 111211100 11123345556666653 345999999997655 111 1 1 111112 2334
Q ss_pred EEEEEecCcchhc-------cCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 043056 284 KVLLTARSLDVLS-------GKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVT 352 (559)
Q Consensus 284 ~IivTTR~~~va~-------~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 352 (559)
.+|++..+..... ...+....+.|++|+.+++++++...+.....-+.-.+..++|+..+||+|..|..
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 4555554433321 12334456999999999999999997654311111245579999999999998864
No 11
>PF05729 NACHT: NACHT domain
Probab=99.24 E-value=7.5e-11 Score=106.49 Aligned_cols=144 Identities=20% Similarity=0.250 Sum_probs=92.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCC----CCeEEEEEeCCCcCHH---HHHHHHHHHhCCCCcCCChhhhHHHHHH
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKL----FDQVVFVEVSQNQDIR---KLQGEIADKLGLKFHEESESGRANSLFK 248 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~l~~ 248 (559)
+++.|+|.+|+||||+++.++........ +...+|++.+...... .+...|..+......... .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-----~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIE-----ELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhH-----HHHHH
Confidence 57999999999999999999998766543 3456777776543322 343444443322111111 12233
Q ss_pred HHHcCCeEEEEEeCCCcccc---------cchhcCCCCC--CCCCcEEEEEecCcch--hccCCCCCCeeecCCCCHHHH
Q 043056 249 RIKAEKKILIILDNIWENLD---------LRVVGIPHGD--GHKDCKVLLTARSLDV--LSGKMDSRPNFSIGVLNEEEA 315 (559)
Q Consensus 249 ~l~~~kr~LlVlDdv~~~~~---------~~~l~~~~~~--~~~gs~IivTTR~~~v--a~~~~~~~~~~~l~~L~~~ea 315 (559)
.+...++++||||++++... +..+...+.. ..++++++||+|.... ..........+.+.+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 33457899999999976532 2222222222 2568999999998766 222334447899999999999
Q ss_pred HHHHHHHhC
Q 043056 316 WNLFKKMAG 324 (559)
Q Consensus 316 ~~Lf~~~~~ 324 (559)
.+++.+++.
T Consensus 156 ~~~~~~~f~ 164 (166)
T PF05729_consen 156 KQYLRKYFS 164 (166)
T ss_pred HHHHHHHhh
Confidence 999988763
No 12
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.22 E-value=1.1e-09 Score=109.55 Aligned_cols=274 Identities=16% Similarity=0.100 Sum_probs=147.0
Q ss_pred CCCccchHHHHHHHHHHcC-----CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHH
Q 043056 153 YLPFESRMFTLRNILSALE-----DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIA 227 (559)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 227 (559)
...|+|++..++.|..++. ......+.++|++|+|||+||+.+++..... + ..+..+....... +...+
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchh-HHHHH
Confidence 3468999999999888775 2345678899999999999999999876532 2 1222211111222 22222
Q ss_pred HHhCCCC----cCCC--hhhhHHHHHHHHHcCCeEEEEEeCCCcccccchhcCCCCCCCCCcEEEEEecCcchhccCC-C
Q 043056 228 DKLGLKF----HEES--ESGRANSLFKRIKAEKKILIILDNIWENLDLRVVGIPHGDGHKDCKVLLTARSLDVLSGKM-D 300 (559)
Q Consensus 228 ~~l~~~~----~~~~--~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~va~~~~-~ 300 (559)
..++... ++.. .......+...+. +.+..+|+++..+...+... + .+.+-|..||+...+..... .
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~-~~~~~~v~~~~~~~~~~~~~---~---~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAME-DFRLDIVIGKGPSARSVRLD---L---PPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHh-hhheeeeeccCccccceeec---C---CCeEEEEecCCccccCHHHHhh
Confidence 3332111 0000 0111122222222 34455666665544444321 1 12455666777654432111 1
Q ss_pred CCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHhcCChHHHHHHHHHhcCCCCCCc
Q 043056 301 SRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTIARALRNKRLFEWKDALEQLRRPSSTNF 380 (559)
Q Consensus 301 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~~l~~~~~~~~ 380 (559)
....+.+++++.++..+++.+.+..... .--.+....|++.|+|.|-.+..++..+ |.... .... ..-.
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~-~~~~-~~it- 218 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNV-EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQ-VRGQ-KIIN- 218 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHH-HcCC-CCcC-
Confidence 2357899999999999999988763221 1224567889999999996665544432 11110 0011 0000
Q ss_pred cchHHHHHHHHHHhhcCCCChhHHHHHH-HhccCC--CCChHHHHHHHhhcccccccchHHHHHHHHHHHHH-HHHHccc
Q 043056 381 KDIQQTAYKAIELSYNKLEGEELKNIFL-LIGYTA--IASIDALLMCGMGLGLFQGVNKMEVARARVRTLVH-KLKASCM 456 (559)
Q Consensus 381 ~~~~~~i~~~l~~sy~~L~~~~lk~cfl-~~s~fp--~i~~~~Li~~w~aeg~i~~~~~~~~~~~~~~~~i~-~L~~~sl 456 (559)
..........+...|..|+++ .+..+. .++.++ .++.+.+.... | .........++ .|++.+|
T Consensus 219 ~~~v~~~l~~l~~~~~~l~~~-~~~~L~al~~~~~~~~~~~~~ia~~l---g---------~~~~~~~~~~e~~Li~~~l 285 (305)
T TIGR00635 219 RDIALKALEMLMIDELGLDEI-DRKLLSVLIEQFQGGPVGLKTLAAAL---G---------EDADTIEDVYEPYLLQIGF 285 (305)
T ss_pred HHHHHHHHHHhCCCCCCCCHH-HHHHHHHHHHHhCCCcccHHHHHHHh---C---------CCcchHHHhhhHHHHHcCC
Confidence 111233333356678888877 455554 556665 45555443321 1 11223345566 5888899
Q ss_pred cccccCC
Q 043056 457 LLDHISK 463 (559)
Q Consensus 457 l~~~~~~ 463 (559)
+.....+
T Consensus 286 i~~~~~g 292 (305)
T TIGR00635 286 LQRTPRG 292 (305)
T ss_pred cccCCch
Confidence 9754443
No 13
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.16 E-value=3.3e-09 Score=106.90 Aligned_cols=277 Identities=15% Similarity=0.096 Sum_probs=146.6
Q ss_pred cCCCCCccchHHHHHHHHHHcC-----CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALE-----DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQG 224 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 224 (559)
|.....|+|++..++.+..++. ......+.++|++|+|||+||+.+++..... + .++..+. ......+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~-~~~~~~l~ 94 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPA-LEKPGDLA 94 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEeccc-ccChHHHH
Confidence 3456679999999988876664 2345678999999999999999999987642 1 1222211 11111222
Q ss_pred HHHHHhCCCC----cCCC--hhhhHHHHHHHHHcCCeEEEEEeCCCcccccchhcCCCCCCCCCcEEEEEecCcchhccC
Q 043056 225 EIADKLGLKF----HEES--ESGRANSLFKRIKAEKKILIILDNIWENLDLRVVGIPHGDGHKDCKVLLTARSLDVLSGK 298 (559)
Q Consensus 225 ~i~~~l~~~~----~~~~--~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~va~~~ 298 (559)
.++..++... ++.. .....+.+...+. +.+..+++|+..+...+.. .+ .+.+-|..||+...+....
T Consensus 95 ~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e-~~~~~~~l~~~~~~~~~~~---~l---~~~~li~at~~~~~l~~~L 167 (328)
T PRK00080 95 AILTNLEEGDVLFIDEIHRLSPVVEEILYPAME-DFRLDIMIGKGPAARSIRL---DL---PPFTLIGATTRAGLLTSPL 167 (328)
T ss_pred HHHHhcccCCEEEEecHhhcchHHHHHHHHHHH-hcceeeeeccCccccceee---cC---CCceEEeecCCcccCCHHH
Confidence 3333322110 0000 0001111222222 3344445554433322211 11 1234566676654432111
Q ss_pred C-CCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHhcCChHHHHHHHHHhcCCCC
Q 043056 299 M-DSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTIARALRNKRLFEWKDALEQLRRPSS 377 (559)
Q Consensus 299 ~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~~l~~~~~ 377 (559)
. .....+.+++++.++..+++.+.+...... --.+.+..|++.|+|.|-.+..+...+. .|.... .....
T Consensus 168 ~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~-~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~---~~~~I 238 (328)
T PRK00080 168 RDRFGIVQRLEFYTVEELEKIVKRSARILGVE-IDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVK---GDGVI 238 (328)
T ss_pred HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHc---CCCCC
Confidence 1 123578999999999999999887633221 2245788999999999965544444322 111111 00000
Q ss_pred CCccchHHHHHHHHHHhhcCCCChhHHHHHH-HhccCC--CCChHHHHHHHhhcccccccchHHHHHHHHHHHHH-HHHH
Q 043056 378 TNFKDIQQTAYKAIELSYNKLEGEELKNIFL-LIGYTA--IASIDALLMCGMGLGLFQGVNKMEVARARVRTLVH-KLKA 453 (559)
Q Consensus 378 ~~~~~~~~~i~~~l~~sy~~L~~~~lk~cfl-~~s~fp--~i~~~~Li~~w~aeg~i~~~~~~~~~~~~~~~~i~-~L~~ 453 (559)
. ..........+...+..|++. .+..+. .+..|+ .+..+.+.... | ......++.++ .|++
T Consensus 239 -~-~~~v~~~l~~~~~~~~~l~~~-~~~~l~~~~~~~~~~~~~~~~~a~~l---g---------~~~~~~~~~~e~~Li~ 303 (328)
T PRK00080 239 -T-KEIADKALDMLGVDELGLDEM-DRKYLRTIIEKFGGGPVGLDTLAAAL---G---------EERDTIEDVYEPYLIQ 303 (328)
T ss_pred -C-HHHHHHHHHHhCCCcCCCCHH-HHHHHHHHHHHcCCCceeHHHHHHHH---C---------CCcchHHHHhhHHHHH
Confidence 0 111334445566777888877 466554 667776 56666654332 1 11122334455 6888
Q ss_pred ccccccccCC
Q 043056 454 SCMLLDHISK 463 (559)
Q Consensus 454 ~sll~~~~~~ 463 (559)
.+|++....+
T Consensus 304 ~~li~~~~~g 313 (328)
T PRK00080 304 QGFIQRTPRG 313 (328)
T ss_pred cCCcccCCch
Confidence 8999755443
No 14
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.92 E-value=5.2e-08 Score=101.23 Aligned_cols=181 Identities=17% Similarity=0.150 Sum_probs=109.4
Q ss_pred CCCCCccchHHHHHH---HHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHH
Q 043056 151 KDYLPFESRMFTLRN---ILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIA 227 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~---l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 227 (559)
.....++|++..+.. |..++..+....+.++|++|+||||||+.+++..... | +.++....-..-++.++
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~--~-----~~l~a~~~~~~~ir~ii 81 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAP--F-----EALSAVTSGVKDLREVI 81 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCC--E-----EEEecccccHHHHHHHH
Confidence 445568888877655 7777777777789999999999999999999876432 2 22222111111112222
Q ss_pred HHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc--ccchhcCCCCCCCCCcEEEE--EecCcc--hhccCCCC
Q 043056 228 DKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL--DLRVVGIPHGDGHKDCKVLL--TARSLD--VLSGKMDS 301 (559)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~Iiv--TTR~~~--va~~~~~~ 301 (559)
.. .......+++.+|++|+++... ..+.+...+. .|..+++ ||.+.. +.......
T Consensus 82 ~~----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR 142 (413)
T PRK13342 82 EE----------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSR 142 (413)
T ss_pred HH----------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhcc
Confidence 21 1111223578999999998653 3344433332 2444444 344332 11112233
Q ss_pred CCeeecCCCCHHHHHHHHHHHhCCCC-CC-cchHHHHHHHHHHhCCChHHHHHHHHHH
Q 043056 302 RPNFSIGVLNEEEAWNLFKKMAGDYI-EG-SEFQSVARDVAKECAGLPVSVVTIARAL 357 (559)
Q Consensus 302 ~~~~~l~~L~~~ea~~Lf~~~~~~~~-~~-~~~~~~~~~I~~~c~GlPLai~~~~~~L 357 (559)
...+.+.+++.++...++.+.+.... .. .-..+..+.|++.|+|.|..+..+....
T Consensus 143 ~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~ 200 (413)
T PRK13342 143 AQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELA 200 (413)
T ss_pred ceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 46899999999999999998764211 11 2225667889999999997665544433
No 15
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.91 E-value=2e-08 Score=98.45 Aligned_cols=225 Identities=16% Similarity=0.105 Sum_probs=128.0
Q ss_pred cCCCCCccchHHHH---HHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHH
Q 043056 150 NKDYLPFESRMFTL---RNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEI 226 (559)
Q Consensus 150 ~~~~~~~~gR~~~~---~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 226 (559)
|.....++|-+..+ .-|...+..+.+....+|||+|+||||||+.+....... | ..++...+-..-++++
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~--f-----~~~sAv~~gvkdlr~i 92 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA--F-----EALSAVTSGVKDLREI 92 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc--e-----EEeccccccHHHHHHH
Confidence 33444555544433 223344456788889999999999999999999865533 3 3333332222222333
Q ss_pred HHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEE--EecCcchh--ccCCC
Q 043056 227 ADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLL--TARSLDVL--SGKMD 300 (559)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iiv--TTR~~~va--~~~~~ 300 (559)
++ .-.+....+++.+|++|.|+.- .+-+.+... -..|.-|+| ||.|+... .....
T Consensus 93 ~e----------------~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~---vE~G~iilIGATTENPsF~ln~ALlS 153 (436)
T COG2256 93 IE----------------EARKNRLLGRRTILFLDEIHRFNKAQQDALLPH---VENGTIILIGATTENPSFELNPALLS 153 (436)
T ss_pred HH----------------HHHHHHhcCCceEEEEehhhhcChhhhhhhhhh---hcCCeEEEEeccCCCCCeeecHHHhh
Confidence 22 1222233478999999999754 344444333 345666666 66665432 22345
Q ss_pred CCCeeecCCCCHHHHHHHHHHHhCCCCC-----Cc-chHHHHHHHHHHhCCChHHHHHHHHHH---hcC----ChHHHHH
Q 043056 301 SRPNFSIGVLNEEEAWNLFKKMAGDYIE-----GS-EFQSVARDVAKECAGLPVSVVTIARAL---RNK----RLFEWKD 367 (559)
Q Consensus 301 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~-----~~-~~~~~~~~I~~~c~GlPLai~~~~~~L---~~~----~~~~w~~ 367 (559)
...++.+++|+.++..+++.+.+-.... .. --++..+.++..++|---+.--...+. ... ..+..++
T Consensus 154 R~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~ 233 (436)
T COG2256 154 RARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEE 233 (436)
T ss_pred hhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHH
Confidence 6679999999999999999985421111 11 124467778999999764332222222 211 2233333
Q ss_pred HHHHhcCCCCCCccchHHHHHHHHHHhhcCCCCh
Q 043056 368 ALEQLRRPSSTNFKDIQQTAYKAIELSYNKLEGE 401 (559)
Q Consensus 368 ~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~ 401 (559)
++..-... .+...+...++..++.-|...=+++
T Consensus 234 ~l~~~~~~-~Dk~gD~hYdliSA~hKSvRGSD~d 266 (436)
T COG2256 234 ILQRRSAR-FDKDGDAHYDLISALHKSVRGSDPD 266 (436)
T ss_pred HHhhhhhc-cCCCcchHHHHHHHHHHhhccCCcC
Confidence 33331111 1111233567778888888877766
No 16
>PRK06893 DNA replication initiation factor; Validated
Probab=98.86 E-value=3.4e-08 Score=94.01 Aligned_cols=153 Identities=14% Similarity=0.154 Sum_probs=93.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcC
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAE 253 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (559)
..+.+.|+|++|+|||+|++.+++....+ ...+.|+++.... ... ..+.+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~---~~~--------------------~~~~~~~~-- 90 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQ---YFS--------------------PAVLENLE-- 90 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhh---hhh--------------------HHHHhhcc--
Confidence 34678999999999999999999987554 2345677653110 000 11222222
Q ss_pred CeEEEEEeCCCcc---cccch-hcCCCCC-CCCCcEEEEEecCc----------chhccCCCCCCeeecCCCCHHHHHHH
Q 043056 254 KKILIILDNIWEN---LDLRV-VGIPHGD-GHKDCKVLLTARSL----------DVLSGKMDSRPNFSIGVLNEEEAWNL 318 (559)
Q Consensus 254 kr~LlVlDdv~~~---~~~~~-l~~~~~~-~~~gs~IivTTR~~----------~va~~~~~~~~~~~l~~L~~~ea~~L 318 (559)
+.-+|+|||+|.. ..|.. +...+.. ...|..+||+|.+. .+.. .......+++++++.++.+++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~s-Rl~~g~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLAS-RLTWGEIYQLNDLTDEQKIIV 169 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHH-HHhcCCeeeCCCCCHHHHHHH
Confidence 3459999999864 34542 2111111 12355565554433 2221 223456889999999999999
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHH
Q 043056 319 FKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTIAR 355 (559)
Q Consensus 319 f~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~ 355 (559)
+++.+....- .--+++.+-|++.+.|..-.+..+-.
T Consensus 170 L~~~a~~~~l-~l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 170 LQRNAYQRGI-ELSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 9988863321 11256778899999887765554443
No 17
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.86 E-value=6.5e-09 Score=102.55 Aligned_cols=292 Identities=21% Similarity=0.222 Sum_probs=189.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCC-CeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLF-DQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKA 252 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 252 (559)
..+.+.++|+|||||||++-++.. ... .| +.+.++...+-.+...+...+...++.+.... ......+...+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~--~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g--~~~~~~~~~~~~- 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AAS--EYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG--DSAVDTLVRRIG- 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hhh--hcccceeeeeccccCchhHhHHHHHhhcccccccc--hHHHHHHHHHHh-
Confidence 457899999999999999999998 443 26 55777777777777777777777777654331 223334445554
Q ss_pred CCeEEEEEeCCCccc-ccchhcCCCCCCCCCcEEEEEecCcchhccCCCCCCeeecCCCCHH-HHHHHHHHHhCCC----
Q 043056 253 EKKILIILDNIWENL-DLRVVGIPHGDGHKDCKVLLTARSLDVLSGKMDSRPNFSIGVLNEE-EAWNLFKKMAGDY---- 326 (559)
Q Consensus 253 ~kr~LlVlDdv~~~~-~~~~l~~~~~~~~~gs~IivTTR~~~va~~~~~~~~~~~l~~L~~~-ea~~Lf~~~~~~~---- 326 (559)
++|.++|+||..... .-..+...+..+.+.-.|+.|+|+.- .......+.+.+|+.. ++.++|...+...
T Consensus 87 ~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~----l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAI----LVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhh----cccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 689999999986542 22222233334445557888888753 3445667888888866 7889988776411
Q ss_pred CCCcchHHHHHHHHHHhCCChHHHHHHHHHHhcCChHHHHHHHHH----hcCCCCCCccchHHHHHHHHHHhhcCCCChh
Q 043056 327 IEGSEFQSVARDVAKECAGLPVSVVTIARALRNKRLFEWKDALEQ----LRRPSSTNFKDIQQTAYKAIELSYNKLEGEE 402 (559)
Q Consensus 327 ~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~~----l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~ 402 (559)
.-...-.....+|+++.+|.|++|...++..+.-...+....++. +... .....-........+.+||.=|...
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgw- 240 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGW- 240 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhH-
Confidence 111222556889999999999999999999987655444443332 2222 2122223566788999999999988
Q ss_pred HHHHHHHhccCC-CCChHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHccccccccCCCcceEEecHHHHHHHHHH
Q 043056 403 LKNIFLLIGYTA-IASIDALLMCGMGLGLFQGVNKMEVARARVRTLVHKLKASCMLLDHISKNEEFFSMHDVVRDIAISI 481 (559)
Q Consensus 403 lk~cfl~~s~fp-~i~~~~Li~~w~aeg~i~~~~~~~~~~~~~~~~i~~L~~~sll~~~~~~~~~~~~mHdlv~d~a~~~ 481 (559)
.+-.|.-++.|. .|..+ ...|.+-|-- ...........+..|++.+++.-....+...|+.-+-+|.|+..+
T Consensus 241 e~~~~~rLa~~~g~f~~~--l~~~~a~g~~-----~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yalae 313 (414)
T COG3903 241 ERALFGRLAVFVGGFDLG--LALAVAAGAD-----VDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAE 313 (414)
T ss_pred HHHHhcchhhhhhhhccc--HHHHHhcCCc-----cccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 689999999998 77665 2334333311 111222233445567888877544333335577777777777766
Q ss_pred hcc
Q 043056 482 ASR 484 (559)
Q Consensus 482 ~~~ 484 (559)
..+
T Consensus 314 L~r 316 (414)
T COG3903 314 LHR 316 (414)
T ss_pred HHh
Confidence 654
No 18
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.83 E-value=2.1e-07 Score=99.66 Aligned_cols=186 Identities=14% Similarity=0.201 Sum_probs=119.5
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhcccCC-------------------CCeEE
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKVKSDKL-------------------FDQVV 209 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~~~ 209 (559)
+..+..++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+.+...-... |..++
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dvi 91 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYV 91 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEE
Confidence 44556789999999999999886653 46679999999999999999887643211 11122
Q ss_pred EEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHH----cCCeEEEEEeCCCccc--ccchhcCCCCCCCCCc
Q 043056 210 FVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIK----AEKKILIILDNIWENL--DLRVVGIPHGDGHKDC 283 (559)
Q Consensus 210 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs 283 (559)
+++.+....+ +.+..+++... .++.-++|||+++... .++.++..+.....+.
T Consensus 92 EIDAas~rgV---------------------DdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v 150 (830)
T PRK07003 92 EMDAASNRGV---------------------DEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHV 150 (830)
T ss_pred EecccccccH---------------------HHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCe
Confidence 3322222211 12222322221 2455688999998764 3666665554445577
Q ss_pred EEEEEecCc-chhccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh-HHHHHHHHHH
Q 043056 284 KVLLTARSL-DVLSGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLP-VSVVTIARAL 357 (559)
Q Consensus 284 ~IivTTR~~-~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~~~~L 357 (559)
++|+||++. .+..........+++++++.++..+.+.+.+......- -.+..+.|++.++|.. -|+..+-..+
T Consensus 151 ~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i-d~eAL~lIA~~A~GsmRdALsLLdQAi 225 (830)
T PRK07003 151 KFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF-EPQALRLLARAAQGSMRDALSLTDQAI 225 (830)
T ss_pred EEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 777777764 33333344557999999999999999998875322111 2456788999999865 5666544433
No 19
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.81 E-value=1.2e-07 Score=96.25 Aligned_cols=200 Identities=15% Similarity=0.115 Sum_probs=112.8
Q ss_pred CCCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-eEEEEEeCCCcCH--HHHHH--H
Q 043056 151 KDYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFD-QVVFVEVSQNQDI--RKLQG--E 225 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~--~~~~~--~ 225 (559)
.....++|++..++.+..++..+..+.+.++|++|+||||+|+.+.+..... .+. ..+.++++...+. ..+.. .
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGD-PWENNFTEFNVADFFDQGKKYLVEDPR 90 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCc-ccccceEEechhhhhhcchhhhhcCcc
Confidence 3345688999999999998887766678899999999999999999876532 222 2345554321100 00000 0
Q ss_pred HHHHhCCC-CcCCChhhhHHHHHHHHHc-----CCeEEEEEeCCCccc--ccchhcCCCCCCCCCcEEEEEecCcc-hhc
Q 043056 226 IADKLGLK-FHEESESGRANSLFKRIKA-----EKKILIILDNIWENL--DLRVVGIPHGDGHKDCKVLLTARSLD-VLS 296 (559)
Q Consensus 226 i~~~l~~~-~~~~~~~~~~~~l~~~l~~-----~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~~-va~ 296 (559)
....++.. ............+.+.... +.+-+||+||++... ....+...+......+++|+||.+.. +..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~ 170 (337)
T PRK12402 91 FAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIP 170 (337)
T ss_pred hhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCch
Confidence 00000000 0000111222222222211 334589999997542 22233332222334567777775432 212
Q ss_pred cCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 043056 297 GKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVT 352 (559)
Q Consensus 297 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 352 (559)
........+.+.+++.++...++...+...... --.+....+++.++|.+-.+..
T Consensus 171 ~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 171 PIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 122334588899999999999998876422211 1255788899999998755443
No 20
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.79 E-value=3e-07 Score=97.13 Aligned_cols=200 Identities=13% Similarity=0.149 Sum_probs=114.8
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCCce-EEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPDVN-MLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIAD 228 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (559)
+..+..++|.+..++.|.+++..++.. .+.++|+.|+||||+|+.+.+...-.+. +..--+. +..+..-...+.|..
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p-~~~~g~~-~~PCG~C~sC~~I~a 89 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGA-DGEGGIT-AQPCGQCRACTEIDA 89 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCc-cccccCC-CCCCcccHHHHHHHc
Confidence 344566899999999999998866544 5689999999999999999987643110 0000000 000000011111110
Q ss_pred H-----hCCCCcCCChhhhHHHHHHHHH----cCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEEEec-Ccchhc
Q 043056 229 K-----LGLKFHEESESGRANSLFKRIK----AEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLLTAR-SLDVLS 296 (559)
Q Consensus 229 ~-----l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR-~~~va~ 296 (559)
. +..+.......+.+..+.+.+. .++.-++|||+++.. ..++.++..+..-..++++|++|. ...+..
T Consensus 90 G~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlp 169 (700)
T PRK12323 90 GRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 169 (700)
T ss_pred CCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhh
Confidence 0 0000000111222333333322 356679999999865 345666555544445566555554 444443
Q ss_pred cCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 043056 297 GKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVT 352 (559)
Q Consensus 297 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 352 (559)
........+.+++++.++..+.+.+.+....... ..+..+.|++.++|.|.-...
T Consensus 170 TIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~-d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 170 TVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH-EVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 3334457899999999999999888765322111 134567899999999964433
No 21
>PF13173 AAA_14: AAA domain
Probab=98.77 E-value=1.5e-08 Score=87.15 Aligned_cols=121 Identities=20% Similarity=0.213 Sum_probs=82.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCC
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEK 254 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 254 (559)
.+++.|.|+.|+|||||+++++.+.. ....++++++...........+ ....+.+... .+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~----------------~~~~~~~~~~-~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD----------------LLEYFLELIK-PG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh----------------hHHHHHHhhc-cC
Confidence 46899999999999999999998765 2345777776654331110000 1112222222 36
Q ss_pred eEEEEEeCCCcccccchhcCCCCCCCCCcEEEEEecCcchh-----ccCCCCCCeeecCCCCHHHH
Q 043056 255 KILIILDNIWENLDLRVVGIPHGDGHKDCKVLLTARSLDVL-----SGKMDSRPNFSIGVLNEEEA 315 (559)
Q Consensus 255 r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~va-----~~~~~~~~~~~l~~L~~~ea 315 (559)
+.+|+||++....+|......+.+..+..+|++|+.+.... ....+....++|.||+..|.
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 78999999999988988777776666678999999876554 12234445889999998774
No 22
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=2.9e-07 Score=100.39 Aligned_cols=186 Identities=13% Similarity=0.148 Sum_probs=114.6
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCCceE-EEEEcCCCCcHHHHHHHHHHHhcccCCC-------------------CeEE
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPDVNM-LGIYGMGGIGKTMLAEEVARKVKSDKLF-------------------DQVV 209 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~~v-i~I~G~~GiGKTtLa~~v~~~~~~~~~f-------------------~~~~ 209 (559)
|..+..++|.+..++.|..++..++..- +.++|+.|+||||+|+.+++........ .-++
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dvi 91 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLI 91 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEE
Confidence 3455678999999999988887666554 5899999999999999999886532111 1112
Q ss_pred EEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEE
Q 043056 210 FVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLL 287 (559)
Q Consensus 210 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iiv 287 (559)
++.......+.. +++|...+ ...-..+++-++|||+++.. ...+.++..+-.....+++|+
T Consensus 92 EidAas~~kVDd-IReLie~v----------------~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFIL 154 (944)
T PRK14949 92 EVDAASRTKVDD-TRELLDNV----------------QYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLL 154 (944)
T ss_pred EeccccccCHHH-HHHHHHHH----------------HhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 222111111111 12222211 00111356779999999765 445555555544445566665
Q ss_pred EecC-cchhccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHH
Q 043056 288 TARS-LDVLSGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPV-SVVTI 353 (559)
Q Consensus 288 TTR~-~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~ 353 (559)
+|.+ ..+..........|++++|+.++....+.+.+..... .--.+.++.|++.++|.|- |+..+
T Consensus 155 aTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI-~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 155 ATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL-PFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred ECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5544 4443223344579999999999999999887753211 1124567889999999885 44443
No 23
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=6.1e-07 Score=89.80 Aligned_cols=176 Identities=18% Similarity=0.190 Sum_probs=116.1
Q ss_pred CCccchHHHHHHHHHHcCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhc----ccCCCCeEEEEEe-CCCcCHHHHHHHHH
Q 043056 154 LPFESRMFTLRNILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKVK----SDKLFDQVVFVEV-SQNQDIRKLQGEIA 227 (559)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~----~~~~f~~~~wv~~-s~~~~~~~~~~~i~ 227 (559)
..++|.+...+.+..++..++ .....++|+.|+||||+|..++.... ...|+|...|... +......+ .+++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 356788888888998887554 45678999999999999999998642 2346776666542 23333333 23333
Q ss_pred HHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCC--cccccchhcCCCCCCCCCcEEEEEecCcchh-ccCCCCCCe
Q 043056 228 DKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIW--ENLDLRVVGIPHGDGHKDCKVLLTARSLDVL-SGKMDSRPN 304 (559)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IivTTR~~~va-~~~~~~~~~ 304 (559)
+.+...+. .+++-++|+|+++ +...++.+...+.....++.+|++|.+.+.. .........
T Consensus 83 ~~~~~~p~----------------~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~ 146 (313)
T PRK05564 83 EEVNKKPY----------------EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQI 146 (313)
T ss_pred HHHhcCcc----------------cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhcee
Confidence 33321110 1345566666664 4456777877777667788888888765432 222344579
Q ss_pred eecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHH
Q 043056 305 FSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVV 351 (559)
Q Consensus 305 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 351 (559)
+++.+++.++....+.+.... .. .+.++.++..++|.|.-+.
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~~-~~----~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 147 YKLNRLSKEEIEKFISYKYND-IK----EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eeCCCcCHHHHHHHHHHHhcC-CC----HHHHHHHHHHcCCCHHHHH
Confidence 999999999998888766531 11 3346788999999986554
No 24
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.75 E-value=1.1e-06 Score=94.89 Aligned_cols=202 Identities=18% Similarity=0.147 Sum_probs=117.7
Q ss_pred CCccchHHHHHHHHHHcC-----CCCceEEEEEcCCCCcHHHHHHHHHHHhccc---CCC--CeEEEEEeCCCcCHHHHH
Q 043056 154 LPFESRMFTLRNILSALE-----DPDVNMLGIYGMGGIGKTMLAEEVARKVKSD---KLF--DQVVFVEVSQNQDIRKLQ 223 (559)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~f--~~~~wv~~s~~~~~~~~~ 223 (559)
..+.||++++++|...|. .....++.|+|++|+|||+.++.|.+..... ... -.+++|++..-.+...++
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 457899999999888775 2233567899999999999999998876421 112 236788887777888899
Q ss_pred HHHHHHhCCCCcC--CChhhhHHHHHHHHHc--CCeEEEEEeCCCcccc-----cchhcCCCCCCCCCcEEEE--EecCc
Q 043056 224 GEIADKLGLKFHE--ESESGRANSLFKRIKA--EKKILIILDNIWENLD-----LRVVGIPHGDGHKDCKVLL--TARSL 292 (559)
Q Consensus 224 ~~i~~~l~~~~~~--~~~~~~~~~l~~~l~~--~kr~LlVlDdv~~~~~-----~~~l~~~~~~~~~gs~Iiv--TTR~~ 292 (559)
..|.+++....+. ....+....+...+.. +...+||||+++.... +-.+... + ...+++|++ +|...
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~-~-~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW-P-TKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH-h-hccCCeEEEEEecCch
Confidence 9999888433322 1223344555555422 2346999999975421 1111111 1 123444443 34322
Q ss_pred chhc----cC--CCCCCeeecCCCCHHHHHHHHHHHhCCC---CCCcchHHHHHHHHHHhCC-ChHHHHHHHHHHh
Q 043056 293 DVLS----GK--MDSRPNFSIGVLNEEEAWNLFKKMAGDY---IEGSEFQSVARDVAKECAG-LPVSVVTIARALR 358 (559)
Q Consensus 293 ~va~----~~--~~~~~~~~l~~L~~~ea~~Lf~~~~~~~---~~~~~~~~~~~~I~~~c~G-lPLai~~~~~~L~ 358 (559)
.... .. .-....+...|++.++-.+++..++... ..+..++-+|+.++ ...| .=.||.++-.+..
T Consensus 913 DLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA-q~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 913 DLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA-NVSGDIRKALQICRKAFE 987 (1164)
T ss_pred hcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh-hcCCHHHHHHHHHHHHHh
Confidence 2111 00 0112346779999999999999988632 12222222233222 3334 3466666554443
No 25
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.74 E-value=1.1e-06 Score=88.42 Aligned_cols=184 Identities=11% Similarity=0.085 Sum_probs=108.4
Q ss_pred CCCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-eEEEEEeCCCcCHHHHHHHHHHH
Q 043056 151 KDYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFD-QVVFVEVSQNQDIRKLQGEIADK 229 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~ 229 (559)
.....++|++..++.+..++..+..+.+.++|+.|+||||+|+.+++...... +. ..+-++.+....... ..+.+..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~~~~i~~~~~~~~~~~~-~~~~i~~ 91 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WRENFLELNASDERGIDV-IRNKIKE 91 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-cccceEEeccccccchHH-HHHHHHH
Confidence 34455889999999999998876666789999999999999999998864332 21 122222222222221 1111111
Q ss_pred hCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc--ccchhcCCCCCCCCCcEEEEEecCcc-hhccCCCCCCeee
Q 043056 230 LGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL--DLRVVGIPHGDGHKDCKVLLTARSLD-VLSGKMDSRPNFS 306 (559)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~~-va~~~~~~~~~~~ 306 (559)
+....+ .....+-++++|+++... ....+...+......+.+|+++.... +..........+.
T Consensus 92 ~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~ 157 (319)
T PRK00440 92 FARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFR 157 (319)
T ss_pred HHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheee
Confidence 110000 001235689999986542 23333333333334566777664322 2111112344789
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHH
Q 043056 307 IGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVV 351 (559)
Q Consensus 307 l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 351 (559)
+.+++.++....+...+...... --.+....+++.++|.+--+.
T Consensus 158 ~~~l~~~ei~~~l~~~~~~~~~~-i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 158 FSPLKKEAVAERLRYIAENEGIE-ITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred eCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 99999999999998877532211 124568889999999985533
No 26
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=4.8e-07 Score=92.28 Aligned_cols=193 Identities=12% Similarity=0.151 Sum_probs=112.0
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIAD 228 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (559)
|.....++|.+..++.+...+..++. ..+.++|+.|+||||+|+.+++.......... ..+..-....++..
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~-------~pc~~c~~c~~~~~ 84 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS-------NPCRKCIICKEIEK 84 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCCCHHHHHHhc
Confidence 34456688999999998888876554 46789999999999999999987642211100 00000000111111
Q ss_pred HhCCCC-----cCCChhhhHHHHHHHHH----cCCeEEEEEeCCCccc--ccchhcCCCCCCCCCcEEEEEecCc-chhc
Q 043056 229 KLGLKF-----HEESESGRANSLFKRIK----AEKKILIILDNIWENL--DLRVVGIPHGDGHKDCKVLLTARSL-DVLS 296 (559)
Q Consensus 229 ~l~~~~-----~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~-~va~ 296 (559)
....+. ......+....+.+.+. .+++-++|+|+++... .++.+...+......+++|++|.+. .+..
T Consensus 85 ~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~ 164 (363)
T PRK14961 85 GLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPK 164 (363)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhH
Confidence 000000 00011122233333321 2455699999998664 4555655555445566777766543 3322
Q ss_pred cCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHH
Q 043056 297 GKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSV 350 (559)
Q Consensus 297 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 350 (559)
...+....+++.+++.++..+.+...+...... --.+.+..|++.++|.|-.+
T Consensus 165 tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~-i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 165 TILSRCLQFKLKIISEEKIFNFLKYILIKESID-TDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred HHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 223345689999999999999888866432111 11456778999999988543
No 27
>PRK04195 replication factor C large subunit; Provisional
Probab=98.69 E-value=3.4e-06 Score=89.54 Aligned_cols=186 Identities=16% Similarity=0.138 Sum_probs=112.8
Q ss_pred cCCCCCccchHHHHHHHHHHcCC----CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALED----PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGE 225 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 225 (559)
|.....++|++..++.|.+|+.. ...+.+.|+|++|+||||+|+.+++... ++ .+-++.+...+... +..
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~~-i~~ 83 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTADV-IER 83 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHHH-HHH
Confidence 34456689999999998888752 2267899999999999999999999864 32 33445554333322 222
Q ss_pred HHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcccc------cchhcCCCCCCCCCcEEEEEecCcc-hhc-c
Q 043056 226 IADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENLD------LRVVGIPHGDGHKDCKVLLTARSLD-VLS-G 297 (559)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~------~~~l~~~~~~~~~gs~IivTTR~~~-va~-~ 297 (559)
++....... .+...++-+||||+++.... +..+...+. ..++.||+|+.+.. ... .
T Consensus 84 ~i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 84 VAGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HHHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhh
Confidence 222211100 01112578999999976432 333333222 22345666665432 111 1
Q ss_pred CCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHh
Q 043056 298 KMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTIARALR 358 (559)
Q Consensus 298 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~ 358 (559)
.......+.+.+++.++....+...+......-. .+....|++.++|..-.+......+.
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~-~eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD-DEALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 1233568999999999999998887742221111 45788999999998765544444443
No 28
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.69 E-value=1.3e-07 Score=90.18 Aligned_cols=170 Identities=12% Similarity=0.119 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCC
Q 043056 159 RMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEES 238 (559)
Q Consensus 159 R~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~ 238 (559)
....++.+..++.......+.|+|++|+|||+||+.+++..... ....++++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~~------~~------------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQ------AD------------ 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHHH------hH------------
Confidence 45567777777655566789999999999999999999886543 33456665432211 00
Q ss_pred hhhhHHHHHHHHHcCCeEEEEEeCCCccc---ccc-hhcCCCCC-CCCCcEEEEEecCcchh--------ccCCCCCCee
Q 043056 239 ESGRANSLFKRIKAEKKILIILDNIWENL---DLR-VVGIPHGD-GHKDCKVLLTARSLDVL--------SGKMDSRPNF 305 (559)
Q Consensus 239 ~~~~~~~l~~~l~~~kr~LlVlDdv~~~~---~~~-~l~~~~~~-~~~gs~IivTTR~~~va--------~~~~~~~~~~ 305 (559)
..+...+. +.-+|||||++... .|. .+...+.. ...+.++|+||+..... .........+
T Consensus 82 -----~~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i 154 (226)
T TIGR03420 82 -----PEVLEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVF 154 (226)
T ss_pred -----HHHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeE
Confidence 01112222 23489999997653 232 22222111 12234788888753211 0011224579
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHH
Q 043056 306 SIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTIARA 356 (559)
Q Consensus 306 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~ 356 (559)
++.+++.++...++...+..... +--.+..+.|.+.+.|+|..+..+...
T Consensus 155 ~l~~l~~~e~~~~l~~~~~~~~~-~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 155 QLPPLSDEEKIAALQSRAARRGL-QLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred ecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 99999999999999876531111 112456778888899999877666443
No 29
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.69 E-value=1.7e-06 Score=91.22 Aligned_cols=199 Identities=14% Similarity=0.065 Sum_probs=115.7
Q ss_pred CCCCCccchHHHHHHHHHHcCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 043056 151 KDYLPFESRMFTLRNILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADK 229 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 229 (559)
.....++|.+...+.|..++..+.. ..+.++|++|+||||+|+.+++.....+.+...+|.|.+.. .+...
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~--------~i~~~ 82 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL--------AVRRG 82 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH--------HHhcC
Confidence 3455688988888888888876654 45699999999999999999988653222222222221110 00000
Q ss_pred hCC-----CCcCCChhhhHHHHHHHHH----cCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEEEec-Ccchhcc
Q 043056 230 LGL-----KFHEESESGRANSLFKRIK----AEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLLTAR-SLDVLSG 297 (559)
Q Consensus 230 l~~-----~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR-~~~va~~ 297 (559)
... ........+.+..+.+.+. .+++-++|+|+++.. ..++.+...+......+.+|++|. ...+...
T Consensus 83 ~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~ 162 (504)
T PRK14963 83 AHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPT 162 (504)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChH
Confidence 000 0000111122223332221 245679999999754 345556555544444555555554 3333222
Q ss_pred CCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHHHHHHh
Q 043056 298 KMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPV-SVVTIARALR 358 (559)
Q Consensus 298 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~~~~L~ 358 (559)
.......+++.+++.++....+.+.+....... -.+.+..|++.++|.+- ++..+-.++.
T Consensus 163 I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i-~~~Al~~ia~~s~GdlR~aln~Lekl~~ 223 (504)
T PRK14963 163 ILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA-EPEALQLVARLADGAMRDAESLLERLLA 223 (504)
T ss_pred HhcceEEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 234456899999999999999998775322111 24567889999999985 4444444333
No 30
>PLN03025 replication factor C subunit; Provisional
Probab=98.69 E-value=4.5e-07 Score=90.99 Aligned_cols=185 Identities=11% Similarity=0.048 Sum_probs=110.2
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-eEEEEEeCCCcCHHHHHHHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFD-QVVFVEVSQNQDIRKLQGEIAD 228 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~ 228 (559)
|.....++|.++.++.|..++..++.+.+.++|++|+||||+|..+++..... .|. .++-++.+...+.. ..+++++
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~eln~sd~~~~~-~vr~~i~ 86 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP-NYKEAVLELNASDDRGID-VVRNKIK 86 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc-cCccceeeecccccccHH-HHHHHHH
Confidence 34455688988888888888777666778899999999999999999886432 122 23333333333322 2222222
Q ss_pred HhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc--ccchhcCCCCCCCCCcEEEEEecCc-chhccCCCCCCee
Q 043056 229 KLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL--DLRVVGIPHGDGHKDCKVLLTARSL-DVLSGKMDSRPNF 305 (559)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~-~va~~~~~~~~~~ 305 (559)
.+..... .+..++.-+++||+++... ....+...+......+++|+++... .+..........+
T Consensus 87 ~~~~~~~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i 153 (319)
T PLN03025 87 MFAQKKV-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIV 153 (319)
T ss_pred HHHhccc-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcc
Confidence 2110000 0011456799999997653 2223332232223456677766543 2211112234589
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHH
Q 043056 306 SIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSV 350 (559)
Q Consensus 306 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 350 (559)
+++++++++....+...+......-. .+....|++.++|..-.+
T Consensus 154 ~f~~l~~~~l~~~L~~i~~~egi~i~-~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 154 RFSRLSDQEILGRLMKVVEAEKVPYV-PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence 99999999999999887753221111 456788999999977443
No 31
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.4e-06 Score=87.98 Aligned_cols=278 Identities=16% Similarity=0.203 Sum_probs=164.4
Q ss_pred ccchHHHHHHHHHHcC----CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhC
Q 043056 156 FESRMFTLRNILSALE----DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLG 231 (559)
Q Consensus 156 ~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 231 (559)
+.+|+.+++++...|. ...+.-+.|+|++|+|||+.++.+.........=..+++|++....+...++..|+++++
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~ 98 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG 98 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC
Confidence 8899999999888775 344445999999999999999999999776422222899999999999999999999996
Q ss_pred C-CCcCCChhhhHHHHHHHHHc-CCeEEEEEeCCCccccc--c---hhcCCCCCCCCCcEE--EEEecCcchh-------
Q 043056 232 L-KFHEESESGRANSLFKRIKA-EKKILIILDNIWENLDL--R---VVGIPHGDGHKDCKV--LLTARSLDVL------- 295 (559)
Q Consensus 232 ~-~~~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~~--~---~l~~~~~~~~~gs~I--ivTTR~~~va------- 295 (559)
. +..+.+..+....+.+.+.. ++.+++|||+++....- + .+....... .++| |..+.+....
T Consensus 99 ~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv 176 (366)
T COG1474 99 KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRV 176 (366)
T ss_pred CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhh
Confidence 3 33345555666677777754 68899999999754222 1 121111111 4443 3344433221
Q ss_pred ccCCCCCCeeecCCCCHHHHHHHHHHHhC----CCCCCcchHHHHHHHHHHhCCC-hHHHHHHHHHHh--cC------Ch
Q 043056 296 SGKMDSRPNFSIGVLNEEEAWNLFKKMAG----DYIEGSEFQSVARDVAKECAGL-PVSVVTIARALR--NK------RL 362 (559)
Q Consensus 296 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~----~~~~~~~~~~~~~~I~~~c~Gl-PLai~~~~~~L~--~~------~~ 362 (559)
....+. ..+...|-+.+|-.+++..++. ....++..-+++..++..-+|- =.||..+-.+.. .+ +.
T Consensus 177 ~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~ 255 (366)
T COG1474 177 KSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSE 255 (366)
T ss_pred hhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCCcCH
Confidence 111222 3488999999999999998874 2233444445555566666653 355555433322 11 22
Q ss_pred HHHHHHHHHhcCCCCCCccchHHHHHHHHHHhhcCCCChhHHHHHHHhccC-CCCChHHHHHHH--hhcccccccchHHH
Q 043056 363 FEWKDALEQLRRPSSTNFKDIQQTAYKAIELSYNKLEGEELKNIFLLIGYT-AIASIDALLMCG--MGLGLFQGVNKMEV 439 (559)
Q Consensus 363 ~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~lk~cfl~~s~f-p~i~~~~Li~~w--~aeg~i~~~~~~~~ 439 (559)
+.-..+.... -...+.-....||.+ .|-.+...... ..+....+-... +.+.+ . .
T Consensus 256 ~~v~~a~~~~--------------~~~~~~~~~~~L~~~-~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~----~-~-- 313 (366)
T COG1474 256 DHVREAQEEI--------------ERDVLEEVLKTLPLH-QKIVLLAIVELTVEISTGELYDVYESLCERL----R-T-- 313 (366)
T ss_pred HHHHHHHHHh--------------hHHHHHHHHHcCCHh-HHHHHHHHHHhcCCCChHHHHHHHHHHHhhh----C-c--
Confidence 2222221111 122233346788887 45554443333 334333332211 11100 0 0
Q ss_pred HHHHHHHHHHHHHHccccc
Q 043056 440 ARARVRTLVHKLKASCMLL 458 (559)
Q Consensus 440 ~~~~~~~~i~~L~~~sll~ 458 (559)
....+.+++++|...+++.
T Consensus 314 ~~~~~~~ii~~L~~lgiv~ 332 (366)
T COG1474 314 SQRRFSDIISELEGLGIVS 332 (366)
T ss_pred hHHHHHHHHHHHHhcCeEE
Confidence 3345667788887777775
No 32
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.61 E-value=2.1e-07 Score=80.34 Aligned_cols=116 Identities=22% Similarity=0.351 Sum_probs=79.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccc---CCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcC-CChhhhHHHHHHH
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSD---KLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHE-ESESGRANSLFKR 249 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~ 249 (559)
+.+.+.|+|++|+|||++++.+.+..... ..-..++|++++...+...+...|+..++..... .+.......+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34689999999999999999999986421 0123477999988889999999999999987666 4455566777777
Q ss_pred HHcCCeEEEEEeCCCcc-c--ccchhcCCCCCCCCCcEEEEEecC
Q 043056 250 IKAEKKILIILDNIWEN-L--DLRVVGIPHGDGHKDCKVLLTARS 291 (559)
Q Consensus 250 l~~~kr~LlVlDdv~~~-~--~~~~l~~~~~~~~~gs~IivTTR~ 291 (559)
+...+..+||+|+++.. . .++.+.. +.+ ..+.+||+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~-l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRS-LLN-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHH-HTC-SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHH-HHh-CCCCeEEEEECh
Confidence 77666689999999765 2 2223322 222 556777777654
No 33
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.61 E-value=4.1e-07 Score=79.85 Aligned_cols=122 Identities=20% Similarity=0.164 Sum_probs=72.9
Q ss_pred chHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCC
Q 043056 158 SRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEE 237 (559)
Q Consensus 158 gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~ 237 (559)
|++..+..+...+.....+.+.|+|++|+|||++++.+++..... -..++++..............+...
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~-------- 71 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF-------- 71 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh--------
Confidence 677888888888876566789999999999999999999987532 2346666655443322211111100
Q ss_pred ChhhhHHHHHHHHHcCCeEEEEEeCCCcc-----cccchhcCCCCC---CCCCcEEEEEecCcc
Q 043056 238 SESGRANSLFKRIKAEKKILIILDNIWEN-----LDLRVVGIPHGD---GHKDCKVLLTARSLD 293 (559)
Q Consensus 238 ~~~~~~~~l~~~l~~~kr~LlVlDdv~~~-----~~~~~l~~~~~~---~~~gs~IivTTR~~~ 293 (559)
............++.+|++||++.. ..+......+.. ...+..||+||....
T Consensus 72 ----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001111112256789999999853 222222222221 135778888887643
No 34
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.61 E-value=1.2e-06 Score=91.93 Aligned_cols=201 Identities=11% Similarity=0.136 Sum_probs=114.8
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCe-EEEEEeCCCcCHHHHHHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQ-VVFVEVSQNQDIRKLQGEIA 227 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~ 227 (559)
|.....++|.+..+..|...+..++ ...+.++|+.|+||||+|+.+++.......... -.+..+... .-...+.
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i~ 92 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISFN 92 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHHh
Confidence 3445568899988888887766554 357889999999999999999987643211100 000000000 0001111
Q ss_pred HHhCCC-----CcCCChhhhHHHHHHHHH----cCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEE-EecCcchh
Q 043056 228 DKLGLK-----FHEESESGRANSLFKRIK----AEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLL-TARSLDVL 295 (559)
Q Consensus 228 ~~l~~~-----~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iiv-TTR~~~va 295 (559)
.....+ .......+.+..+.+... .+++-++|+|+++.. ..++.+...+......+.+|+ ||+...+.
T Consensus 93 ~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~ 172 (507)
T PRK06645 93 NHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIP 172 (507)
T ss_pred cCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhh
Confidence 000000 000111222233333221 246678999999865 346666655554445666554 44444544
Q ss_pred ccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHHHH
Q 043056 296 SGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPV-SVVTIAR 355 (559)
Q Consensus 296 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~~~ 355 (559)
.........+.+.+++.++....+...+.......+ .+....|++.++|.+- |+..+-.
T Consensus 173 ~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie-~eAL~~Ia~~s~GslR~al~~Ldk 232 (507)
T PRK06645 173 ATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD-IEALRIIAYKSEGSARDAVSILDQ 232 (507)
T ss_pred HHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 323334568999999999999999988863322111 4557789999999874 4444433
No 35
>PTZ00202 tuzin; Provisional
Probab=98.60 E-value=6.4e-06 Score=82.71 Aligned_cols=165 Identities=16% Similarity=0.184 Sum_probs=105.0
Q ss_pred ccCCCCCccchHHHHHHHHHHcCC---CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHH
Q 043056 149 FNKDYLPFESRMFTLRNILSALED---PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGE 225 (559)
Q Consensus 149 ~~~~~~~~~gR~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 225 (559)
.|.+...|+||+.++..|...|.+ ...+++.|.|++|+|||||++.+..... ...++++.. +..++++.
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~-----~~qL~vNpr---g~eElLr~ 328 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG-----MPAVFVDVR---GTEDTLRS 328 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC-----ceEEEECCC---CHHHHHHH
Confidence 456677899999999999988852 2346999999999999999999996654 123444433 67999999
Q ss_pred HHHHhCCCCcCCChhhhHHHHHHHHH----c-CCeEEEEEeCCCcccccchh---cCCCCCCCCCcEEEEEecCcch--h
Q 043056 226 IADKLGLKFHEESESGRANSLFKRIK----A-EKKILIILDNIWENLDLRVV---GIPHGDGHKDCKVLLTARSLDV--L 295 (559)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~l~----~-~kr~LlVlDdv~~~~~~~~l---~~~~~~~~~gs~IivTTR~~~v--a 295 (559)
|+.+||.+.. ....+....+.+.+. . +++.+||+- +.+...+..+ ...+.+...-|.|++----+.+ +
T Consensus 329 LL~ALGV~p~-~~k~dLLrqIqeaLl~~~~e~GrtPVLII~-lreg~~l~rvyne~v~la~drr~ch~v~evpleslt~~ 406 (550)
T PTZ00202 329 VVKALGVPNV-EACGDLLDFISEACRRAKKMNGETPLLVLK-LREGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIA 406 (550)
T ss_pred HHHHcCCCCc-ccHHHHHHHHHHHHHHHHHhCCCCEEEEEE-ecCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchh
Confidence 9999997432 222334444444432 2 566666653 2222221111 0122233445666664433322 2
Q ss_pred ccCCCCCCeeecCCCCHHHHHHHHHHHh
Q 043056 296 SGKMDSRPNFSIGVLNEEEAWNLFKKMA 323 (559)
Q Consensus 296 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 323 (559)
....+.-..|.+.+++.++|...-.+..
T Consensus 407 ~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 407 NTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cccCccceeEecCCCCHHHHHHHHhhcc
Confidence 2234555688999999999998887765
No 36
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=1.3e-06 Score=91.40 Aligned_cols=191 Identities=15% Similarity=0.172 Sum_probs=112.6
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhcccCC-------------------CCeEE
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKVKSDKL-------------------FDQVV 209 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~~~ 209 (559)
|.....++|.+.....|...+..+.. ..+.++|++|+||||+|+.+++....... +....
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~ 89 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVI 89 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccE
Confidence 44456688988888888887776665 45889999999999999999887543211 00122
Q ss_pred EEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEE
Q 043056 210 FVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLL 287 (559)
Q Consensus 210 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iiv 287 (559)
.++.+.......+ ++|...... .-..+++-++|+|+++.. ...+.+...+......+.+|+
T Consensus 90 el~aa~~~gid~i-R~i~~~~~~----------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Il 152 (472)
T PRK14962 90 ELDAASNRGIDEI-RKIRDAVGY----------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVL 152 (472)
T ss_pred EEeCcccCCHHHH-HHHHHHHhh----------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 2222222222221 122211110 001245679999999754 334445444433333445444
Q ss_pred EecC-cchhccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCC-hHHHHHHHHHHh
Q 043056 288 TARS-LDVLSGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGL-PVSVVTIARALR 358 (559)
Q Consensus 288 TTR~-~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLai~~~~~~L~ 358 (559)
+|.+ ..+..........+.+.+++.++....+...+...... --.+....|++.++|. +.++..+-.+..
T Consensus 153 attn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~-i~~eal~~Ia~~s~GdlR~aln~Le~l~~ 224 (472)
T PRK14962 153 ATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE-IDREALSFIAKRASGGLRDALTMLEQVWK 224 (472)
T ss_pred EeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4443 33333233445689999999999999998877422111 1145677889888655 677777766443
No 37
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.57 E-value=3.8e-07 Score=88.01 Aligned_cols=158 Identities=18% Similarity=0.185 Sum_probs=102.4
Q ss_pred HHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHH
Q 043056 168 SALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLF 247 (559)
Q Consensus 168 ~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~ 247 (559)
+.+.++....+.+||++|+||||||+.+....+... +.||..|-...-..-.++|+++.. -.
T Consensus 155 s~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq--------------~~ 216 (554)
T KOG2028|consen 155 SLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQ--------------NE 216 (554)
T ss_pred HHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHH--------------HH
Confidence 344478889999999999999999999998776542 667877765544444455554321 11
Q ss_pred HHHHcCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEE--EecCcchh--ccCCCCCCeeecCCCCHHHHHHHHHH
Q 043056 248 KRIKAEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLL--TARSLDVL--SGKMDSRPNFSIGVLNEEEAWNLFKK 321 (559)
Q Consensus 248 ~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iiv--TTR~~~va--~~~~~~~~~~~l~~L~~~ea~~Lf~~ 321 (559)
.. ..++|.+|++|.|..- .+-+.+ +|.-.+|.-++| ||.+...- ........++.|++|+.++...++.+
T Consensus 217 ~~-l~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 217 KS-LTKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred Hh-hhcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHH
Confidence 11 2368999999999643 333333 334456776665 67665431 22345567999999999999999988
Q ss_pred HhC---C------CCCCcc---hHHHHHHHHHHhCCCh
Q 043056 322 MAG---D------YIEGSE---FQSVARDVAKECAGLP 347 (559)
Q Consensus 322 ~~~---~------~~~~~~---~~~~~~~I~~~c~GlP 347 (559)
... + ....+. -..+.+-++..|.|-.
T Consensus 293 aia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 293 AIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred HHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 542 1 111111 1345666777888875
No 38
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=6.6e-07 Score=92.20 Aligned_cols=196 Identities=12% Similarity=0.089 Sum_probs=116.2
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCCce-EEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPDVN-MLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIAD 228 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (559)
|.....++|.+..+..|..++..++.. .+.++|+.|+||||+|+.+++........... .+....+- ..|..
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~---pCg~C~sC----~~i~~ 86 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNE---PCNECTSC----LEITK 86 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCcc---ccCCCcHH----HHHHc
Confidence 445567899998999988888876654 58999999999999999999876532111100 01111111 11111
Q ss_pred HhCCCC---c--CCChhhhHHHHHHHHH----cCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEE-EecCcchhc
Q 043056 229 KLGLKF---H--EESESGRANSLFKRIK----AEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLL-TARSLDVLS 296 (559)
Q Consensus 229 ~l~~~~---~--~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iiv-TTR~~~va~ 296 (559)
....+. + .....+.+..+.+.+. .++.-++|+|+++.. ..++.+...+........+|+ ||....+..
T Consensus 87 g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~ 166 (484)
T PRK14956 87 GISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPE 166 (484)
T ss_pred cCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccH
Confidence 111100 0 0111222333333332 356679999999865 446666555544334555554 444444433
Q ss_pred cCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh-HHHHHH
Q 043056 297 GKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLP-VSVVTI 353 (559)
Q Consensus 297 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~ 353 (559)
........|.+.+++.++..+.+.+.+......- -.+....|++.++|.+ -|+..+
T Consensus 167 TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~-e~eAL~~Ia~~S~Gd~RdAL~lL 223 (484)
T PRK14956 167 TILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQY-DQEGLFWIAKKGDGSVRDMLSFM 223 (484)
T ss_pred HHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCChHHHHHHHH
Confidence 3344456899999999999999888765322111 2456788999999998 444444
No 39
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=1.1e-06 Score=93.07 Aligned_cols=186 Identities=12% Similarity=0.164 Sum_probs=115.4
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhcccCCC-------------------CeEE
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKVKSDKLF-------------------DQVV 209 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-------------------~~~~ 209 (559)
|.....++|.+...+.|..++..++ ...+.++|+.|+||||+|+.+++...-.... ..++
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDvi 90 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLI 90 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceE
Confidence 4455678999999999999988665 4577999999999999999998876432111 1112
Q ss_pred EEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHH----HcCCeEEEEEeCCCcc--cccchhcCCCCCCCCCc
Q 043056 210 FVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRI----KAEKKILIILDNIWEN--LDLRVVGIPHGDGHKDC 283 (559)
Q Consensus 210 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs 283 (559)
.++.+.... .+.+..++... ..++.-++|+|+++.. ...+.+...+.....+.
T Consensus 91 EIDAAs~~~---------------------VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v 149 (702)
T PRK14960 91 EIDAASRTK---------------------VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHV 149 (702)
T ss_pred EecccccCC---------------------HHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCc
Confidence 222211111 12222232222 1256678999999865 34455544444444566
Q ss_pred EEEEEecCc-chhccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHHHHHH
Q 043056 284 KVLLTARSL-DVLSGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPV-SVVTIARAL 357 (559)
Q Consensus 284 ~IivTTR~~-~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~~~~L 357 (559)
++|++|.+. .+..........+++++++.++..+.+.+.+......-+ .+....|++.++|.+- |+..+-.++
T Consensus 150 ~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id-~eAL~~IA~~S~GdLRdALnLLDQaI 224 (702)
T PRK14960 150 KFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD-QDAIWQIAESAQGSLRDALSLTDQAI 224 (702)
T ss_pred EEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 777777653 232222344579999999999999999887753222211 4557789999999874 444433333
No 40
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.56 E-value=5.4e-06 Score=84.80 Aligned_cols=185 Identities=12% Similarity=0.154 Sum_probs=111.1
Q ss_pred CCCCCccchHHHHHHHHHHcCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhcccC--------------------CCCeEE
Q 043056 151 KDYLPFESRMFTLRNILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKVKSDK--------------------LFDQVV 209 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------------------~f~~~~ 209 (559)
.....++|.+..++.|.+++..+.. ..+.++|++|+||||+|+.+........ +++. +
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~ 89 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-I 89 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-E
Confidence 4455688999999999998876554 4678999999999999999988754221 2222 2
Q ss_pred EEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEE
Q 043056 210 FVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLL 287 (559)
Q Consensus 210 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iiv 287 (559)
+++.+....... .+++...+.... ..+++-++|+|+++.. ...+.+...+......+.+|+
T Consensus 90 ~~~~~~~~~~~~-~~~l~~~~~~~p----------------~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 90 EIDAASNNGVDD-IREILDNVKYAP----------------SSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred EeeccccCCHHH-HHHHHHHHhcCc----------------ccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEE
Confidence 222221111111 122222211000 0134558899998654 334555444443345566667
Q ss_pred EecCcc-hhccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHH
Q 043056 288 TARSLD-VLSGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTIA 354 (559)
Q Consensus 288 TTR~~~-va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 354 (559)
+|.+.. +..........+.+.+++.++....+...+......- -.+.+..+++.++|.|..+....
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i-~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI-EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCChHHHHHHH
Confidence 765443 2221223345888999999999999988764221111 14567889999999996554443
No 41
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=1.8e-06 Score=91.23 Aligned_cols=186 Identities=11% Similarity=0.178 Sum_probs=114.0
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhcccC-------------------CCCeEE
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKVKSDK-------------------LFDQVV 209 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 209 (559)
|.....++|.+..+..|...+..++. ..+.++|+.|+||||+|+.+++...... .|...+
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 34456688999999999988876544 4578999999999999999998654211 111222
Q ss_pred EEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHH----HcCCeEEEEEeCCCcc--cccchhcCCCCCCCCCc
Q 043056 210 FVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRI----KAEKKILIILDNIWEN--LDLRVVGIPHGDGHKDC 283 (559)
Q Consensus 210 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs 283 (559)
++.......+. ....+.+.+ ..+++-++|+|+++.. ..++.+...+......+
T Consensus 92 eidaas~~gvd---------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v 150 (546)
T PRK14957 92 EIDAASRTGVE---------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYV 150 (546)
T ss_pred EeecccccCHH---------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCc
Confidence 22222222221 112222221 1256679999999754 34555655555444556
Q ss_pred EEEEEe-cCcchhccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh-HHHHHHHHHH
Q 043056 284 KVLLTA-RSLDVLSGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLP-VSVVTIARAL 357 (559)
Q Consensus 284 ~IivTT-R~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~~~~L 357 (559)
.+|++| ....+..........+++++++.++....+.+.+...... --.+....|++.++|.+ .|+..+-.++
T Consensus 151 ~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~-~e~~Al~~Ia~~s~GdlR~alnlLek~i 225 (546)
T PRK14957 151 KFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENIN-SDEQSLEYIAYHAKGSLRDALSLLDQAI 225 (546)
T ss_pred eEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 555544 4343432233445799999999999988888765432211 12455678999999977 4555554433
No 42
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=2.7e-06 Score=85.70 Aligned_cols=198 Identities=12% Similarity=0.066 Sum_probs=116.0
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhcccCC--CCeEEEEEeCCCcCHHHHHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKVKSDKL--FDQVVFVEVSQNQDIRKLQGEI 226 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~~s~~~~~~~~~~~i 226 (559)
|.....++|.+.....+...+..+.. ..+.|+|+.|+||||+|..+....-.... +... .....+......+.|
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i 95 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQI 95 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHH
Confidence 44566789999999999998876653 46899999999999999999987643210 1111 011111111123333
Q ss_pred HHHhCC-------CCcC-------CChhhhHHHHHHHHH----cCCeEEEEEeCCCccc--ccchhcCCCCCCCCCcEEE
Q 043056 227 ADKLGL-------KFHE-------ESESGRANSLFKRIK----AEKKILIILDNIWENL--DLRVVGIPHGDGHKDCKVL 286 (559)
Q Consensus 227 ~~~l~~-------~~~~-------~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~Ii 286 (559)
...-.. +.+. .-..+.+..+.+.+. .+++-++|+|+++... ..+.+...+.....+..+|
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fi 175 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFI 175 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEE
Confidence 222110 0000 011234444555543 3567799999997653 3344443333323344444
Q ss_pred EEe-cCcchhccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 043056 287 LTA-RSLDVLSGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTI 353 (559)
Q Consensus 287 vTT-R~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 353 (559)
++| +...+..........+++.+++.++..+++........ -..+....+++.++|.|.....+
T Consensus 176 Lit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 176 LISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred EEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 444 44334332334456999999999999999988532211 11445778999999999755433
No 43
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.53 E-value=1.8e-06 Score=93.70 Aligned_cols=204 Identities=17% Similarity=0.139 Sum_probs=117.8
Q ss_pred CCCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCC---CeEEEEEeCCC---cCHHHHHH
Q 043056 151 KDYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLF---DQVVFVEVSQN---QDIRKLQG 224 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~s~~---~~~~~~~~ 224 (559)
.....++|+...+..+.+.+..+....+.|+|++|+||||||+.+++.......+ ...-|+.+... .+...+..
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 3455688999888888887766666789999999999999999998876543322 12334444321 12222211
Q ss_pred H---------------HHHHhCCCC------------------cCCChhhhHHHHHHHHHcCCeEEEEEeCCCcc--ccc
Q 043056 225 E---------------IADKLGLKF------------------HEESESGRANSLFKRIKAEKKILIILDNIWEN--LDL 269 (559)
Q Consensus 225 ~---------------i~~~l~~~~------------------~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~ 269 (559)
. .+...+... ...-+......+...+. .+++.++-|+.|.. ..|
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le-~~~v~~~~~~~~~~~~~~~ 309 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLE-DKRVEFSSSYYDPDDPNVP 309 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHh-hCeEEeecceeccCCcccc
Confidence 1 111112110 00011223445555555 56777776666543 457
Q ss_pred chhcCCCCCCCCCcEEEE--EecCcchh-ccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCC
Q 043056 270 RVVGIPHGDGHKDCKVLL--TARSLDVL-SGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGL 346 (559)
Q Consensus 270 ~~l~~~~~~~~~gs~Iiv--TTR~~~va-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl 346 (559)
+.+...+....+...|++ ||++.... .........+.+.+++.++.+.++++.+...... --.++.+.|.+.+..-
T Consensus 310 ~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~-ls~eal~~L~~ys~~g 388 (615)
T TIGR02903 310 KYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH-LAAGVEELIARYTIEG 388 (615)
T ss_pred hhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHCCCcH
Confidence 766655555555554555 56644321 1112233478899999999999999987632111 1134555666666555
Q ss_pred hHHHHHHHHH
Q 043056 347 PVSVVTIARA 356 (559)
Q Consensus 347 PLai~~~~~~ 356 (559)
+-++..++.+
T Consensus 389 Rraln~L~~~ 398 (615)
T TIGR02903 389 RKAVNILADV 398 (615)
T ss_pred HHHHHHHHHH
Confidence 6777766555
No 44
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=2.9e-06 Score=86.69 Aligned_cols=172 Identities=13% Similarity=0.084 Sum_probs=105.6
Q ss_pred CCccchHHHHHHHHHHcCCCC----------ceEEEEEcCCCCcHHHHHHHHHHHhcccC-------------------C
Q 043056 154 LPFESRMFTLRNILSALEDPD----------VNMLGIYGMGGIGKTMLAEEVARKVKSDK-------------------L 204 (559)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~~~~----------~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~ 204 (559)
..++|.+..++.|..++..+. ...+.++|+.|+|||++|..++....-.. |
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 457888888888888887542 45688999999999999999987643221 1
Q ss_pred CCeEEEEEeC-CCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHH----cCCeEEEEEeCCCcc--cccchhcCCCC
Q 043056 205 FDQVVFVEVS-QNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIK----AEKKILIILDNIWEN--LDLRVVGIPHG 277 (559)
Q Consensus 205 f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~ 277 (559)
.|.. ++... .... .+.+..+.+.+. .+++-++++|+++.. ...+.+...+.
T Consensus 85 pD~~-~i~~~~~~i~---------------------i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LE 142 (394)
T PRK07940 85 PDVR-VVAPEGLSIG---------------------VDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVE 142 (394)
T ss_pred CCEE-EeccccccCC---------------------HHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhh
Confidence 2211 11111 1111 112223333321 245568888999755 23344444443
Q ss_pred CCCCCcEEEEEecC-cchhccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 043056 278 DGHKDCKVLLTARS-LDVLSGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTI 353 (559)
Q Consensus 278 ~~~~gs~IivTTR~-~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 353 (559)
....++.+|++|.+ ..+..........+.+.+++.++..+.+....+ . + .+.+..++..++|.|.....+
T Consensus 143 ep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~--~-~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 143 EPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG--V-D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred cCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC--C-C---HHHHHHHHHHcCCCHHHHHHH
Confidence 34445666666655 334333334457999999999999988875432 1 1 345778999999999755333
No 45
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=5.1e-06 Score=84.21 Aligned_cols=196 Identities=14% Similarity=0.077 Sum_probs=115.3
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCCce-EEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEE------EEEeCCCcCHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPDVN-MLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVV------FVEVSQNQDIRKL 222 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~------wv~~s~~~~~~~~ 222 (559)
|.....++|.+...+.|.+.+..++.. .+.++|+.|+||+|+|..+.+..--+....... -+.+.... ..
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c---~~ 91 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH---PV 91 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC---hH
Confidence 444567899999999999988866644 688999999999999999988764322110000 00000000 11
Q ss_pred HHHHHHHhCCC-------CcC-------CChhhhHHHHHHHHH----cCCeEEEEEeCCCcc--cccchhcCCCCCCCCC
Q 043056 223 QGEIADKLGLK-------FHE-------ESESGRANSLFKRIK----AEKKILIILDNIWEN--LDLRVVGIPHGDGHKD 282 (559)
Q Consensus 223 ~~~i~~~l~~~-------~~~-------~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~g 282 (559)
.+.|...-..+ ..+ .-..+.+..+.+.+. .+++-++|+|+++.. ...+.+...+.....+
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 11121111100 000 011233444444442 256779999999754 3344454444433445
Q ss_pred cEEEEEecCc-chhccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 043056 283 CKVLLTARSL-DVLSGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTI 353 (559)
Q Consensus 283 s~IivTTR~~-~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 353 (559)
+.+|++|.+. .+..........+.+.+++.++..+++....... + .+....+++.++|.|+....+
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~---~--~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL---P--DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC---C--HHHHHHHHHHcCCCHHHHHHH
Confidence 6677777654 3333334456799999999999999998865321 1 122367899999999865444
No 46
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.48 E-value=4e-06 Score=77.33 Aligned_cols=158 Identities=17% Similarity=0.173 Sum_probs=94.2
Q ss_pred HHHHcCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhccc--------------------CCCCeEEEEEeC-CCcCHHHHH
Q 043056 166 ILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKVKSD--------------------KLFDQVVFVEVS-QNQDIRKLQ 223 (559)
Q Consensus 166 l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~--------------------~~f~~~~wv~~s-~~~~~~~~~ 223 (559)
|.+.+..++. ..+.++|+.|+||||+|..+....... .+.|.. ++... ..... +..
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~-~~~~~~~~~~~-~~i 81 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLH-RLEPEGQSIKV-DQV 81 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEE-EeccccCcCCH-HHH
Confidence 4444444544 679999999999999999998886432 122222 22111 11111 111
Q ss_pred HHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEEEecCc-chhccCCC
Q 043056 224 GEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLLTARSL-DVLSGKMD 300 (559)
Q Consensus 224 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~-~va~~~~~ 300 (559)
+++.+.+.... ..+.+-++|+||++.. ..++.+...+......+.+|++|++. .+......
T Consensus 82 ~~i~~~~~~~~----------------~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~s 145 (188)
T TIGR00678 82 RELVEFLSRTP----------------QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRS 145 (188)
T ss_pred HHHHHHHccCc----------------ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHh
Confidence 22222221100 0245678999999654 33555555554444556677766653 22222223
Q ss_pred CCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH
Q 043056 301 SRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPV 348 (559)
Q Consensus 301 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 348 (559)
....+.+.+++.++..+.+.+. + .. .+.+..|++.++|.|.
T Consensus 146 r~~~~~~~~~~~~~~~~~l~~~-g--i~----~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 146 RCQVLPFPPLSEEALLQWLIRQ-G--IS----EEAAELLLALAGGSPG 186 (188)
T ss_pred hcEEeeCCCCCHHHHHHHHHHc-C--CC----HHHHHHHHHHcCCCcc
Confidence 4469999999999999998887 2 21 4568899999999885
No 47
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.48 E-value=6.1e-06 Score=87.50 Aligned_cols=198 Identities=12% Similarity=0.107 Sum_probs=111.5
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIAD 228 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (559)
|.....++|++..++.|..++..+. ...+.++|+.|+||||+|+.+++.....+..+ .. .++.-...+.+..
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~------~~-~Cg~C~sCr~i~~ 84 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKD------GD-CCNSCSVCESINT 84 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CC-CCcccHHHHHHHc
Confidence 4455678899999999999886544 45788999999999999999998764322111 00 0111111111111
Q ss_pred HhCCCC---c--CCChhhhHHHHHHHHH----cCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEEEe-cCcchhc
Q 043056 229 KLGLKF---H--EESESGRANSLFKRIK----AEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLLTA-RSLDVLS 296 (559)
Q Consensus 229 ~l~~~~---~--~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTT-R~~~va~ 296 (559)
....+. + .....+.+..+.+... .+++-++|+|+++.. ..+..+...+......+.+|++| ....+..
T Consensus 85 ~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~ 164 (605)
T PRK05896 85 NQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPL 164 (605)
T ss_pred CCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhH
Confidence 110000 0 0011112222222221 123446999999754 34555554443333455555444 3333332
Q ss_pred cCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh-HHHHHHHH
Q 043056 297 GKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLP-VSVVTIAR 355 (559)
Q Consensus 297 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~~~ 355 (559)
........+++.+++.++....+...+......- -.+.+..+++.++|.+ .|+..+-.
T Consensus 165 TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I-s~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 165 TIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI-EDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2233456899999999999999888764221111 1445788999999976 45555544
No 48
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.48 E-value=5.4e-07 Score=86.11 Aligned_cols=90 Identities=16% Similarity=0.177 Sum_probs=62.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCC--cCHHHHHHHHHHHhCCCCcCCChhh------hHHH-
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQN--QDIRKLQGEIADKLGLKFHEESESG------RANS- 245 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~- 245 (559)
-..+.|.|++|+|||||++.+++..... +|+.++|+.+.++ .++.++++.+...+-...-+.+... .+..
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999988765 8999999998776 7899999998332211111111111 1112
Q ss_pred HHHHHHcCCeEEEEEeCCCc
Q 043056 246 LFKRIKAEKKILIILDNIWE 265 (559)
Q Consensus 246 l~~~l~~~kr~LlVlDdv~~ 265 (559)
.......+++.+|++|++..
T Consensus 95 a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHCCCCEEEEEECHHH
Confidence 22222358999999999954
No 49
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.48 E-value=5.7e-07 Score=82.66 Aligned_cols=48 Identities=21% Similarity=0.269 Sum_probs=34.8
Q ss_pred CccchHHHHHHHHHHcC---CCCceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 043056 155 PFESRMFTLRNILSALE---DPDVNMLGIYGMGGIGKTMLAEEVARKVKSD 202 (559)
Q Consensus 155 ~~~gR~~~~~~l~~~L~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (559)
.|+||+++++++...+. ....+.+.|+|++|+|||+|++.++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 38999999999999993 4567899999999999999999999988766
No 50
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.48 E-value=2e-06 Score=94.31 Aligned_cols=173 Identities=16% Similarity=0.199 Sum_probs=99.9
Q ss_pred cCCCCCccchHHHHH---HHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHH
Q 043056 150 NKDYLPFESRMFTLR---NILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEI 226 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~---~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 226 (559)
|.....++|.+..+. .+...+..+....+.++|++|+||||||+.+++.... +|. .++.+. ..+.++ +++
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~--~f~---~lna~~-~~i~di-r~~ 96 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRA--HFS---SLNAVL-AGVKDL-RAE 96 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcC--cce---eehhhh-hhhHHH-HHH
Confidence 344556888887764 4556666667778899999999999999999987543 231 111110 011110 111
Q ss_pred HHHhCCCCcCCChhhhHHHHHHHHH-cCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEEE--ecCcc--hhccCC
Q 043056 227 ADKLGLKFHEESESGRANSLFKRIK-AEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLLT--ARSLD--VLSGKM 299 (559)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivT--TR~~~--va~~~~ 299 (559)
.......+. .+++.+|+|||++.. ..++.+...+ ..|+.++|+ |.+.. +.....
T Consensus 97 ----------------i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~ 157 (725)
T PRK13341 97 ----------------VDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALV 157 (725)
T ss_pred ----------------HHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhh
Confidence 111111111 145789999999754 3344444332 235555553 33321 111122
Q ss_pred CCCCeeecCCCCHHHHHHHHHHHhCC------CCCCcchHHHHHHHHHHhCCChH
Q 043056 300 DSRPNFSIGVLNEEEAWNLFKKMAGD------YIEGSEFQSVARDVAKECAGLPV 348 (559)
Q Consensus 300 ~~~~~~~l~~L~~~ea~~Lf~~~~~~------~~~~~~~~~~~~~I~~~c~GlPL 348 (559)
.....+.+++|+.++...++.+.+.. .....--.+..+.|++.+.|..-
T Consensus 158 SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 158 SRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred ccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 33468999999999999999887641 11111124567888888988753
No 51
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.48 E-value=2.5e-06 Score=91.65 Aligned_cols=196 Identities=11% Similarity=0.100 Sum_probs=114.3
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCCce-EEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPDVN-MLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIAD 228 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (559)
|..+..++|.+..++.|...+..++.. .+.++|+.|+||||+|+.+++.......+.. ..+..-...+.|..
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~-------~pCg~C~~C~~i~~ 84 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA-------TPCGECDNCREIEQ 84 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC-------CCCCCCHHHHHHHc
Confidence 445667899999999998888766554 4689999999999999999887543211100 00000011111111
Q ss_pred HhCC-----CCcCCChhhhHHHHHHHHH----cCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEEEec-Ccchhc
Q 043056 229 KLGL-----KFHEESESGRANSLFKRIK----AEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLLTAR-SLDVLS 296 (559)
Q Consensus 229 ~l~~-----~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR-~~~va~ 296 (559)
.-.. +.......+.+..+.+.+. .+++-++|+|+++.. ...+.++..+-.....+++|++|. ...+..
T Consensus 85 g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~ 164 (647)
T PRK07994 85 GRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (647)
T ss_pred CCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccch
Confidence 0000 0000011222333333322 356679999999765 345555554444444555555544 444433
Q ss_pred cCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHH
Q 043056 297 GKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPV-SVVTI 353 (559)
Q Consensus 297 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~ 353 (559)
........|++++|+.++....+.+.+....... -.+....|++.++|.+- |+..+
T Consensus 165 TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~-e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 165 TILSRCLQFHLKALDVEQIRQQLEHILQAEQIPF-EPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred HHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 2334467999999999999999988764221111 14556789999999885 44444
No 52
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=2.1e-06 Score=90.78 Aligned_cols=190 Identities=11% Similarity=0.143 Sum_probs=114.6
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCCce-EEEEEcCCCCcHHHHHHHHHHHhcccCCC-------------------CeEE
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPDVN-MLGIYGMGGIGKTMLAEEVARKVKSDKLF-------------------DQVV 209 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-------------------~~~~ 209 (559)
|.....++|-+..++.|..++..++.. .+.++|+.|+||||+|+.+.+...-...+ .-++
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLF 91 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEE
Confidence 445567899999999999999766554 57899999999999999999876432111 1123
Q ss_pred EEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEE
Q 043056 210 FVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLL 287 (559)
Q Consensus 210 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iiv 287 (559)
.+..+....+.++ ++++..+... -..++.-++|+|+++.. ...+.+...+......+++|+
T Consensus 92 eidaas~~~v~~i-R~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIl 154 (509)
T PRK14958 92 EVDAASRTKVEDT-RELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFIL 154 (509)
T ss_pred EEcccccCCHHHH-HHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 3333222222222 2222222111 01255678999999865 345555544444445666666
Q ss_pred EecC-cchhccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHHHHHH
Q 043056 288 TARS-LDVLSGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPV-SVVTIARAL 357 (559)
Q Consensus 288 TTR~-~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~~~~L 357 (559)
+|.+ ..+..........+++++++.++....+.+.+.......+ .+....|++.++|.+- |+..+-.++
T Consensus 155 attd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~-~~al~~ia~~s~GslR~al~lLdq~i 225 (509)
T PRK14958 155 ATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE-NAALDLLARAANGSVRDALSLLDQSI 225 (509)
T ss_pred EECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5543 3333222334568899999999988877776643221111 3456789999999885 444443433
No 53
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.47 E-value=2.2e-06 Score=91.80 Aligned_cols=186 Identities=12% Similarity=0.188 Sum_probs=112.9
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhcccCCC-------------------CeEE
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKVKSDKLF-------------------DQVV 209 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-------------------~~~~ 209 (559)
|.....++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+.+...-.... ..++
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dvl 91 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLL 91 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceE
Confidence 44556789999999999998886654 468999999999999999998875322111 0112
Q ss_pred EEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHH----HcCCeEEEEEeCCCcccc--cchhcCCCCCCCCCc
Q 043056 210 FVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRI----KAEKKILIILDNIWENLD--LRVVGIPHGDGHKDC 283 (559)
Q Consensus 210 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~gs 283 (559)
.+..+....+ +.+..+++.. ..+++-++|+|+++.... .+.+...+......+
T Consensus 92 EidaAs~~gV---------------------d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v 150 (709)
T PRK08691 92 EIDAASNTGI---------------------DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHV 150 (709)
T ss_pred EEeccccCCH---------------------HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCc
Confidence 2222211111 1222222221 124567999999976532 334444443333456
Q ss_pred EEEEEecC-cchhccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHHHHHH
Q 043056 284 KVLLTARS-LDVLSGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPV-SVVTIARAL 357 (559)
Q Consensus 284 ~IivTTR~-~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~~~~L 357 (559)
++|++|.+ ..+.....+....+.+.+++.++....+.+.+......- -.+....|++.++|.+. ++..+-.++
T Consensus 151 ~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i-d~eAL~~Ia~~A~GslRdAlnLLDqai 225 (709)
T PRK08691 151 KFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY-EPPALQLLGRAAAGSMRDALSLLDQAI 225 (709)
T ss_pred EEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 66766654 333222223345788999999999999988775322211 14567889999999984 444443433
No 54
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=4.2e-06 Score=87.29 Aligned_cols=186 Identities=11% Similarity=0.130 Sum_probs=114.2
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCCce-EEEEEcCCCCcHHHHHHHHHHHhcccC-------------------CCCeEE
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPDVN-MLGIYGMGGIGKTMLAEEVARKVKSDK-------------------LFDQVV 209 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 209 (559)
|.....++|.+..++.|...+..++.. .+.++|+.|+||||+|+.++....-.. .+..++
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ 88 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVI 88 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEE
Confidence 345567889998888888887766554 799999999999999999987532110 111233
Q ss_pred EEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc--ccchhcCCCCCCCCCcEEEE
Q 043056 210 FVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL--DLRVVGIPHGDGHKDCKVLL 287 (559)
Q Consensus 210 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~Iiv 287 (559)
.++.+....+.++ ++|++...... ..+++-++|+|+++... ..+.+...+....+.+++|+
T Consensus 89 eidaas~~~vddI-R~Iie~~~~~P----------------~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIl 151 (491)
T PRK14964 89 EIDAASNTSVDDI-KVILENSCYLP----------------ISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFIL 151 (491)
T ss_pred EEecccCCCHHHH-HHHHHHHHhcc----------------ccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 4444333333322 22222211000 01456689999997553 35555555544445666666
Q ss_pred Eec-CcchhccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHH
Q 043056 288 TAR-SLDVLSGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPV-SVVTI 353 (559)
Q Consensus 288 TTR-~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~ 353 (559)
+|. ...+..........+.+.+++.++....+.+.+......-+ .+....|++.++|.+- ++..+
T Consensus 152 atte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~-~eAL~lIa~~s~GslR~alslL 218 (491)
T PRK14964 152 ATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD-EESLKLIAENSSGSMRNALFLL 218 (491)
T ss_pred EeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHH
Confidence 554 34443323345578999999999999999887753222111 4557789999999875 43444
No 55
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=1.8e-06 Score=89.15 Aligned_cols=203 Identities=11% Similarity=0.119 Sum_probs=114.5
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCCce-EEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEE-eCCCcCHHHHHHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPDVN-MLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVE-VSQNQDIRKLQGEIA 227 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i~ 227 (559)
|.....++|.+...+.|..++..++.. .+.++|+.|+||||+|..+++...-...+....|.. ....+..-...+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~ 91 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFD 91 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHh
Confidence 344566889998888898888766654 488999999999999999998764322111111110 000111111111111
Q ss_pred HHhCCCC-----cCCChhhhHHHHHHHHH----cCCeEEEEEeCCCccc--ccchhcCCCCCCCCCcEEEEEe-cCcchh
Q 043056 228 DKLGLKF-----HEESESGRANSLFKRIK----AEKKILIILDNIWENL--DLRVVGIPHGDGHKDCKVLLTA-RSLDVL 295 (559)
Q Consensus 228 ~~l~~~~-----~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTT-R~~~va 295 (559)
.....+. ......+.+..+.+.+. .+++-++|+|+++... .++.+...+....+.+.+|++| +...+.
T Consensus 92 ~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~ 171 (397)
T PRK14955 92 AGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (397)
T ss_pred cCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhH
Confidence 1110000 00111233333444442 2456688999997553 4666655555444566666555 333332
Q ss_pred ccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHH
Q 043056 296 SGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPV-SVVTI 353 (559)
Q Consensus 296 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~ 353 (559)
.........+++.+++.++....+...+...... --.+.+..|++.++|.+- ++..+
T Consensus 172 ~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~-i~~~al~~l~~~s~g~lr~a~~~L 229 (397)
T PRK14955 172 ATIASRCQRFNFKRIPLEEIQQQLQGICEAEGIS-VDADALQLIGRKAQGSMRDAQSIL 229 (397)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2112233578999999999998888876422111 114568889999999885 44433
No 56
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=4.3e-06 Score=89.65 Aligned_cols=198 Identities=11% Similarity=0.120 Sum_probs=113.4
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhcccCCC--CeEEEEEeCCCcCHHHHHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKVKSDKLF--DQVVFVEVSQNQDIRKLQGEI 226 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i 226 (559)
+.....++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+.+...-.... ..... ..++.-...+.|
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i 87 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDI 87 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHH
Confidence 34456688988888899988876655 466899999999999999998765421100 00000 000111111111
Q ss_pred HHHhC-----CCCcCCChhhhHHHHHHHHH----cCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEEEec-Ccch
Q 043056 227 ADKLG-----LKFHEESESGRANSLFKRIK----AEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLLTAR-SLDV 294 (559)
Q Consensus 227 ~~~l~-----~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR-~~~v 294 (559)
...-. .+.......+.+..+.+... .++.-++|||+++.. ..++.+...+......+++|++|. ...+
T Consensus 88 ~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 88 DSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKV 167 (618)
T ss_pred HcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhh
Confidence 10000 00000111222333333322 244568999999865 345556555544445666665554 3444
Q ss_pred hccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 043056 295 LSGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVT 352 (559)
Q Consensus 295 a~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 352 (559)
..........+++++++.++....+.+.+.......+ .+....|++.++|.+--+..
T Consensus 168 l~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie-~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 168 PVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE-PQALRLLARAARGSMRDALS 224 (618)
T ss_pred hHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHH
Confidence 3223345579999999999999999887753222111 45678899999998744433
No 57
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.43 E-value=1.1e-05 Score=74.24 Aligned_cols=177 Identities=18% Similarity=0.173 Sum_probs=92.9
Q ss_pred cCCCCCccchHHHHHHHHHHcC-----CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALE-----DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQG 224 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 224 (559)
|....+|+|.+..++.+.-.+. .+....+.+|||+|+||||||..+++..... | .+.+.+.-....
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~---~~~sg~~i~k~~---- 90 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--F---KITSGPAIEKAG---- 90 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----E---EEEECCC--SCH----
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--e---EeccchhhhhHH----
Confidence 5567789998887776543332 3457789999999999999999999987754 3 222221100111
Q ss_pred HHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcccc---------cchhcC--CCCCC----------CCCc
Q 043056 225 EIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENLD---------LRVVGI--PHGDG----------HKDC 283 (559)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~---------~~~l~~--~~~~~----------~~gs 283 (559)
.+..+...+ +++.+|++|+++.... .+.... ....+ .+-+
T Consensus 91 -----------------dl~~il~~l--~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 91 -----------------DLAAILTNL--KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp -----------------HHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred -----------------HHHHHHHhc--CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 112222223 2456788888865421 111100 00000 1122
Q ss_pred EEEEEecCcchhccCCCCC-CeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHH
Q 043056 284 KVLLTARSLDVLSGKMDSR-PNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTIAR 355 (559)
Q Consensus 284 ~IivTTR~~~va~~~~~~~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~ 355 (559)
-|=.|||...+........ -..+++..+.+|-.++..+.+...... -.++.+.+|+++|.|-|--..-+..
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~-i~~~~~~~Ia~rsrGtPRiAnrll~ 223 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIE-IDEDAAEEIARRSRGTPRIANRLLR 223 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-E-E-HHHHHHHHHCTTTSHHHHHHHHH
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCC-cCHHHHHHHHHhcCCChHHHHHHHH
Confidence 3456888765543222333 356899999999999999877532221 2256799999999999954444433
No 58
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=8.9e-06 Score=86.68 Aligned_cols=185 Identities=14% Similarity=0.182 Sum_probs=112.0
Q ss_pred CCCCCccchHHHHHHHHHHcCCCCce-EEEEEcCCCCcHHHHHHHHHHHhcccCC-------------------CCeEEE
Q 043056 151 KDYLPFESRMFTLRNILSALEDPDVN-MLGIYGMGGIGKTMLAEEVARKVKSDKL-------------------FDQVVF 210 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~~~w 210 (559)
.....++|.+..++.|..++..++.. .+.++|+.|+||||+|+.+.....-... |...++
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~e 92 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIE 92 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeE
Confidence 44556889999999999888765554 5689999999999999999887642211 111222
Q ss_pred EEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHH----cCCeEEEEEeCCCccc--ccchhcCCCCCCCCCcE
Q 043056 211 VEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIK----AEKKILIILDNIWENL--DLRVVGIPHGDGHKDCK 284 (559)
Q Consensus 211 v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ 284 (559)
+..+.... .+.+..+.+... .+++-++|+|+++... ..+.+...+......+.
T Consensus 93 i~~~~~~~---------------------vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~ 151 (527)
T PRK14969 93 VDAASNTQ---------------------VDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (527)
T ss_pred eeccccCC---------------------HHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEE
Confidence 22221111 112222222221 2566799999997653 34555545544444566
Q ss_pred EEEEecC-cchhccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHHHHHH
Q 043056 285 VLLTARS-LDVLSGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPV-SVVTIARAL 357 (559)
Q Consensus 285 IivTTR~-~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~~~~L 357 (559)
+|++|.+ ..+..........+++++++.++....+.+.+....... -.+....|++.++|.+- |+..+-.++
T Consensus 152 fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~-~~~al~~la~~s~Gslr~al~lldqai 225 (527)
T PRK14969 152 FILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPF-DATALQLLARAAAGSMRDALSLLDQAI 225 (527)
T ss_pred EEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6655543 333211122346899999999999988887764222111 24456889999999874 555543333
No 59
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=1.2e-05 Score=85.87 Aligned_cols=200 Identities=13% Similarity=0.100 Sum_probs=113.3
Q ss_pred CCCCCccchHHHHHHHHHHcCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 043056 151 KDYLPFESRMFTLRNILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADK 229 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 229 (559)
.....++|.+..+..|...+..++ ...+.++|+.|+||||+|+.+.+...-....+. ..++.-...+.|...
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~~g 85 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVTQG 85 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHhcC
Confidence 345567888888888888887655 467889999999999999999987643211100 000000111111110
Q ss_pred hCCCC-----cCCChhhhHHHHHHHHH----cCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEEEecC-cchhcc
Q 043056 230 LGLKF-----HEESESGRANSLFKRIK----AEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLLTARS-LDVLSG 297 (559)
Q Consensus 230 l~~~~-----~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~-~~va~~ 297 (559)
...+. ......+.+..+.+.+. .+++-++|+|+++.. ...+.+...+........+|++|.+ ..+...
T Consensus 86 ~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~T 165 (624)
T PRK14959 86 MHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVT 165 (624)
T ss_pred CCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHH
Confidence 00000 00001112222222221 255679999999765 3345554444333344555555544 444322
Q ss_pred CCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh-HHHHHHHHHHh
Q 043056 298 KMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLP-VSVVTIARALR 358 (559)
Q Consensus 298 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~~~~L~ 358 (559)
.......+++++++.++....+...+...... --.+.++.|++.++|.+ .|+..+..++.
T Consensus 166 I~SRcq~i~F~pLs~~eL~~~L~~il~~egi~-id~eal~lIA~~s~GdlR~Al~lLeqll~ 226 (624)
T PRK14959 166 IVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD-YDPAAVRLIARRAAGSVRDSMSLLGQVLA 226 (624)
T ss_pred HHhhhhccccCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 22334688999999999999998866432111 11456788999999965 67777765553
No 60
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.41 E-value=8e-07 Score=88.61 Aligned_cols=89 Identities=18% Similarity=0.239 Sum_probs=61.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCc--CHHHHHHHHHHHhCCCCcCCChhh------hHHHHH
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQ--DIRKLQGEIADKLGLKFHEESESG------RANSLF 247 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~------~~~~l~ 247 (559)
....|+|++|+||||||+.+|+....+ +|+.++||.+.+.. .+.++++.|...+-...-+.+... .+....
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999998876 89999999998887 777888877632211111111111 111122
Q ss_pred HHH-HcCCeEEEEEeCCCc
Q 043056 248 KRI-KAEKKILIILDNIWE 265 (559)
Q Consensus 248 ~~l-~~~kr~LlVlDdv~~ 265 (559)
+.+ ..+++++|++|++..
T Consensus 249 e~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHcCCCEEEEEEChHH
Confidence 222 358999999999954
No 61
>PRK08727 hypothetical protein; Validated
Probab=98.40 E-value=3.9e-06 Score=80.04 Aligned_cols=161 Identities=13% Similarity=0.123 Sum_probs=95.0
Q ss_pred HHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhh
Q 043056 162 TLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESG 241 (559)
Q Consensus 162 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~ 241 (559)
.+..+...........+.|+|++|+|||.|++.+++....+ ...+.|+++.+ ....+
T Consensus 28 ~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~~~--------------- 84 (233)
T PRK08727 28 LLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAGRL--------------- 84 (233)
T ss_pred HHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhhhH---------------
Confidence 34443333333334569999999999999999999886654 23556665322 11111
Q ss_pred hHHHHHHHHHcCCeEEEEEeCCCccc---ccchhcCCCCC--CCCCcEEEEEecCcchh--------ccCCCCCCeeecC
Q 043056 242 RANSLFKRIKAEKKILIILDNIWENL---DLRVVGIPHGD--GHKDCKVLLTARSLDVL--------SGKMDSRPNFSIG 308 (559)
Q Consensus 242 ~~~~l~~~l~~~kr~LlVlDdv~~~~---~~~~l~~~~~~--~~~gs~IivTTR~~~va--------~~~~~~~~~~~l~ 308 (559)
....+.+. +.-+|||||+.... .|......+.. ...|..||+|++...-. .........+.++
T Consensus 85 --~~~~~~l~--~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~ 160 (233)
T PRK08727 85 --RDALEALE--GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLP 160 (233)
T ss_pred --HHHHHHHh--cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEec
Confidence 11223332 34699999997542 23322111111 12356699999853211 0112234689999
Q ss_pred CCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHH
Q 043056 309 VLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSV 350 (559)
Q Consensus 309 ~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 350 (559)
+++.++-..++.+++....- .--.+...-|++.++|..-.+
T Consensus 161 ~~~~e~~~~iL~~~a~~~~l-~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 161 VLDDVARAAVLRERAQRRGL-ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred CCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhCCCCHHHH
Confidence 99999999999987643211 112456778888888766544
No 62
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.40 E-value=4.3e-06 Score=79.89 Aligned_cols=167 Identities=13% Similarity=0.072 Sum_probs=99.5
Q ss_pred HHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCCh
Q 043056 160 MFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESE 239 (559)
Q Consensus 160 ~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~ 239 (559)
...+..+..+......+.+.|+|+.|+|||+|++.+++..... -..+.|+++.....
T Consensus 30 ~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~--------------------- 86 (235)
T PRK08084 30 DSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW--------------------- 86 (235)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh---------------------
Confidence 3345555555444455689999999999999999999876643 23466766532100
Q ss_pred hhhHHHHHHHHHcCCeEEEEEeCCCcc---cccchh----cCCCCCCCCCcEEEEEecCcchh--------ccCCCCCCe
Q 043056 240 SGRANSLFKRIKAEKKILIILDNIWEN---LDLRVV----GIPHGDGHKDCKVLLTARSLDVL--------SGKMDSRPN 304 (559)
Q Consensus 240 ~~~~~~l~~~l~~~kr~LlVlDdv~~~---~~~~~l----~~~~~~~~~gs~IivTTR~~~va--------~~~~~~~~~ 304 (559)
....+.+.+. +--+|++||+... ..|+.. ...... ..+.++|+||+...-. ........+
T Consensus 87 --~~~~~~~~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e-~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~ 161 (235)
T PRK08084 87 --FVPEVLEGME--QLSLVCIDNIECIAGDELWEMAIFDLYNRILE-SGRTRLLITGDRPPRQLNLGLPDLASRLDWGQI 161 (235)
T ss_pred --hhHHHHHHhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHH-cCCCeEEEeCCCChHHcCcccHHHHHHHhCCce
Confidence 0011222222 1248899999653 334322 112111 1234789998854321 112234578
Q ss_pred eecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHH
Q 043056 305 FSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTIAR 355 (559)
Q Consensus 305 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~ 355 (559)
+.++++++++-.+++.+.+.... -.--+++..-|++.+.|..-++..+..
T Consensus 162 ~~l~~~~~~~~~~~l~~~a~~~~-~~l~~~v~~~L~~~~~~d~r~l~~~l~ 211 (235)
T PRK08084 162 YKLQPLSDEEKLQALQLRARLRG-FELPEDVGRFLLKRLDREMRTLFMTLD 211 (235)
T ss_pred eeecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCHHHHHHHHH
Confidence 99999999999999988664321 112256788888988887655544433
No 63
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.40 E-value=3.5e-06 Score=86.23 Aligned_cols=173 Identities=20% Similarity=0.250 Sum_probs=101.2
Q ss_pred CCCccchHHHHHHHHHHcC----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCH
Q 043056 153 YLPFESRMFTLRNILSALE----D---------PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDI 219 (559)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 219 (559)
...+.|++..+++|.+.+. . ..++-+.++|++|+|||++|+.+++..... | +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~--~-----~~v~~---- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT--F-----IRVVG---- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC--E-----Eecch----
Confidence 4457889998888877653 1 234569999999999999999999976532 2 22211
Q ss_pred HHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc----------------ccchhcCCCC--CCCC
Q 043056 220 RKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL----------------DLRVVGIPHG--DGHK 281 (559)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~----------------~~~~l~~~~~--~~~~ 281 (559)
..+.... ++ ........+.+......+.+|+||+++... .+..+...+. ....
T Consensus 190 ~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 260 (364)
T TIGR01242 190 SELVRKY---IG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRG 260 (364)
T ss_pred HHHHHHh---hh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 1111111 11 011122333333344567899999986531 1111211111 1234
Q ss_pred CcEEEEEecCcchhc-cCC---CCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 043056 282 DCKVLLTARSLDVLS-GKM---DSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLP 347 (559)
Q Consensus 282 gs~IivTTR~~~va~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (559)
+.+||.||....... ... .....+.+...+.++..++|+.++......++. -...+++.+.|..
T Consensus 261 ~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 261 NVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred CEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 677888887543221 111 224578999999999999999887643322211 1456778887764
No 64
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=1.1e-05 Score=82.94 Aligned_cols=187 Identities=13% Similarity=0.154 Sum_probs=108.3
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhccc------CCCCe-EEEEEeCCCcCHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKVKSD------KLFDQ-VVFVEVSQNQDIRK 221 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~------~~f~~-~~wv~~s~~~~~~~ 221 (559)
|.....++|.+...+.+..++..+.. +.+.++|+.|+||||+|..+.+..... ..|.. ++-+......+..+
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 92 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD 92 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH
Confidence 34456688999999999999876554 588899999999999999998875431 11211 11111111111111
Q ss_pred HHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc--ccchhcCCCCCCCCCcEEEEEec-CcchhccC
Q 043056 222 LQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL--DLRVVGIPHGDGHKDCKVLLTAR-SLDVLSGK 298 (559)
Q Consensus 222 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR-~~~va~~~ 298 (559)
.+++++.+... .. .+++-++++|+++... .++.+...+......+.+|++|. ...+....
T Consensus 93 -i~~l~~~~~~~---------------p~-~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l 155 (367)
T PRK14970 93 -IRNLIDQVRIP---------------PQ-TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTI 155 (367)
T ss_pred -HHHHHHHHhhc---------------cc-cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHH
Confidence 12222221100 00 1345689999986542 35544433333233455555553 33332222
Q ss_pred CCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHHH
Q 043056 299 MDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPV-SVVTIA 354 (559)
Q Consensus 299 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~~ 354 (559)
......+++++++.++....+...+......- -.+.+..+++.++|.+- ++..+-
T Consensus 156 ~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i-~~~al~~l~~~~~gdlr~~~~~le 211 (367)
T PRK14970 156 LSRCQIFDFKRITIKDIKEHLAGIAVKEGIKF-EDDALHIIAQKADGALRDALSIFD 211 (367)
T ss_pred HhcceeEecCCccHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHhCCCCHHHHHHHHH
Confidence 23345899999999999998888764322111 14578889999999765 444333
No 65
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=1.1e-05 Score=89.55 Aligned_cols=183 Identities=13% Similarity=0.117 Sum_probs=111.9
Q ss_pred CCCCCccchHHHHHHHHHHcCCCCce-EEEEEcCCCCcHHHHHHHHHHHhcccCCCC---------------------eE
Q 043056 151 KDYLPFESRMFTLRNILSALEDPDVN-MLGIYGMGGIGKTMLAEEVARKVKSDKLFD---------------------QV 208 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~---------------------~~ 208 (559)
..+..++|.+..++.|..++..++.. .+.++|+.|+||||+|+.+.+...-.+... .+
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv 91 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDV 91 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcE
Confidence 34556889999999999988866554 578999999999999999998764211110 01
Q ss_pred EEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHH----HcCCeEEEEEeCCCcc--cccchhcCCCCCCCCC
Q 043056 209 VFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRI----KAEKKILIILDNIWEN--LDLRVVGIPHGDGHKD 282 (559)
Q Consensus 209 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~g 282 (559)
++++...... .+.+..+.+.+ ..++.-++|||+++.. ...+.|+..+..-...
T Consensus 92 ~eidaas~~~---------------------Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~ 150 (824)
T PRK07764 92 TEIDAASHGG---------------------VDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEH 150 (824)
T ss_pred EEecccccCC---------------------HHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCC
Confidence 1222111111 12222222221 1245568899999765 3455555555444456
Q ss_pred cEEEEEec-CcchhccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHHHH
Q 043056 283 CKVLLTAR-SLDVLSGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPV-SVVTIAR 355 (559)
Q Consensus 283 s~IivTTR-~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~~~ 355 (559)
+.+|++|. ...+..........|++.+++.++..+.+.+.+....... -.+....|++.++|.+. ++..+-.
T Consensus 151 ~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i-d~eal~lLa~~sgGdlR~Al~eLEK 224 (824)
T PRK07764 151 LKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV-EPGVLPLVIRAGGGSVRDSLSVLDQ 224 (824)
T ss_pred eEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 66665554 4444432334567899999999999998888764222111 13456789999999884 4434333
No 66
>PF14516 AAA_35: AAA-like domain
Probab=98.31 E-value=7.7e-05 Score=75.07 Aligned_cols=199 Identities=12% Similarity=0.133 Sum_probs=117.6
Q ss_pred CCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCC-----cCHHHHHHHH--
Q 043056 154 LPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQN-----QDIRKLQGEI-- 226 (559)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-----~~~~~~~~~i-- 226 (559)
.-.+.|...-+++.+.+.++ -..+.|.|+..+|||+|...+.+..... .+ .++++++..- .+....++.+
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~f~~~~~~ 87 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQFLRWFCE 87 (331)
T ss_pred CcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHHHHHHHHH
Confidence 33567886667777777643 2589999999999999999999988765 23 3557776542 2455555544
Q ss_pred --HHHhCCCCcC-------CCh-hhhHHHHHHHHH--cCCeEEEEEeCCCcccc--------cchhcCCCCC---C-CCC
Q 043056 227 --ADKLGLKFHE-------ESE-SGRANSLFKRIK--AEKKILIILDNIWENLD--------LRVVGIPHGD---G-HKD 282 (559)
Q Consensus 227 --~~~l~~~~~~-------~~~-~~~~~~l~~~l~--~~kr~LlVlDdv~~~~~--------~~~l~~~~~~---~-~~g 282 (559)
.++++.+..- ... ......+.+.+. .+++.+|+||+++.... +..++..... . .-.
T Consensus 88 ~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~ 167 (331)
T PF14516_consen 88 EISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQ 167 (331)
T ss_pred HHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccc
Confidence 4555543210 011 111122222222 26899999999975422 1111111000 0 011
Q ss_pred c--EEEEEecCcchh----ccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHH
Q 043056 283 C--KVLLTARSLDVL----SGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTIARA 356 (559)
Q Consensus 283 s--~IivTTR~~~va----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~ 356 (559)
. -|++.+...... .........+.|++++.+|...|...+-.. .. ....++|...+||+|.-+..++..
T Consensus 168 ~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-~~----~~~~~~l~~~tgGhP~Lv~~~~~~ 242 (331)
T PF14516_consen 168 KLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-FS----QEQLEQLMDWTGGHPYLVQKACYL 242 (331)
T ss_pred eEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-CC----HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1 122222111111 111223458999999999999999876432 11 223889999999999999999999
Q ss_pred HhcC
Q 043056 357 LRNK 360 (559)
Q Consensus 357 L~~~ 360 (559)
+...
T Consensus 243 l~~~ 246 (331)
T PF14516_consen 243 LVEE 246 (331)
T ss_pred HHHc
Confidence 9754
No 67
>PRK09087 hypothetical protein; Validated
Probab=98.31 E-value=1.2e-05 Score=76.08 Aligned_cols=141 Identities=14% Similarity=0.089 Sum_probs=86.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCC
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEK 254 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 254 (559)
.+.+.|+|++|+|||+|++.++..... .+++.. .+..++ ...+..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~-------~~i~~~------~~~~~~--------------------~~~~~~-- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDA-------LLIHPN------EIGSDA--------------------ANAAAE-- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCC-------EEecHH------HcchHH--------------------HHhhhc--
Confidence 467999999999999999988875432 233321 111111 112211
Q ss_pred eEEEEEeCCCccc----ccchhcCCCCCCCCCcEEEEEecCcchh--------ccCCCCCCeeecCCCCHHHHHHHHHHH
Q 043056 255 KILIILDNIWENL----DLRVVGIPHGDGHKDCKVLLTARSLDVL--------SGKMDSRPNFSIGVLNEEEAWNLFKKM 322 (559)
Q Consensus 255 r~LlVlDdv~~~~----~~~~l~~~~~~~~~gs~IivTTR~~~va--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 322 (559)
-+|++||+.... .+-.+...+ ...|..+|+|++...-. ........++++++++.++-..++.+.
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~--~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSV--RQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHH--HhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 378889996432 111111111 12356788888743221 112345579999999999999999988
Q ss_pred hCCCCCCcchHHHHHHHHHHhCCChHHHHHHH
Q 043056 323 AGDYIEGSEFQSVARDVAKECAGLPVSVVTIA 354 (559)
Q Consensus 323 ~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 354 (559)
+....- .--+++..-|++.+.|..-++..+.
T Consensus 166 ~~~~~~-~l~~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 166 FADRQL-YVDPHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHHcCC-CCCHHHHHHHHHHhhhhHHHHHHHH
Confidence 853211 1125678889999988877666443
No 68
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=1.6e-05 Score=85.57 Aligned_cols=199 Identities=10% Similarity=0.110 Sum_probs=115.3
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhcccCCCC--eEEEEEeCCCcCHHHHHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKVKSDKLFD--QVVFVEVSQNQDIRKLQGEI 226 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~~s~~~~~~~~~~~i 226 (559)
|.....++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+++...-..... ...+- .+..-.-.+.|
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~~i 95 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQAI 95 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHHHH
Confidence 34456789999999999998876654 4688999999999999999998754321110 00000 00000111122
Q ss_pred HHHhCCCC-----cCCChhhhHHHHHHHHH----cCCeEEEEEeCCCccc--ccchhcCCCCCCCCCcEEEEEe-cCcch
Q 043056 227 ADKLGLKF-----HEESESGRANSLFKRIK----AEKKILIILDNIWENL--DLRVVGIPHGDGHKDCKVLLTA-RSLDV 294 (559)
Q Consensus 227 ~~~l~~~~-----~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTT-R~~~v 294 (559)
......+. ......+.+..+.+.+. .+++-++|+|+++... ..+.+...+.....++.+|++| ....+
T Consensus 96 ~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kl 175 (598)
T PRK09111 96 MEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKV 175 (598)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhh
Confidence 21111100 01111223333443332 2455689999997653 3555555554444566665555 44444
Q ss_pred hccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 043056 295 LSGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTI 353 (559)
Q Consensus 295 a~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 353 (559)
..........+.+.+++.++....+.+.+......- -.+....|++.++|.+.-+...
T Consensus 176 l~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i-~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 176 PVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV-EDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 322333456899999999999999988775222111 1356788999999998655443
No 69
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=2.4e-05 Score=84.77 Aligned_cols=181 Identities=11% Similarity=0.132 Sum_probs=110.5
Q ss_pred CCCCCccchHHHHHHHHHHcCCCCce-EEEEEcCCCCcHHHHHHHHHHHhcc---------------------cCCCCeE
Q 043056 151 KDYLPFESRMFTLRNILSALEDPDVN-MLGIYGMGGIGKTMLAEEVARKVKS---------------------DKLFDQV 208 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~---------------------~~~f~~~ 208 (559)
.....++|.+...+.|..++..+... .+.++|+.|+||||+|..+.....- ..+|+.
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~- 92 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI- 92 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-
Confidence 34556889999999999998866554 5889999999999999998886531 112332
Q ss_pred EEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEE
Q 043056 209 VFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVL 286 (559)
Q Consensus 209 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Ii 286 (559)
..+..+......++ +.++.++.... ..+++=++|+|+++.. ..++.+...+.....++.+|
T Consensus 93 ~~ld~~~~~~vd~I-r~li~~~~~~P----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifI 155 (614)
T PRK14971 93 HELDAASNNSVDDI-RNLIEQVRIPP----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFI 155 (614)
T ss_pred EEecccccCCHHHH-HHHHHHHhhCc----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEE
Confidence 22222222222221 12222211100 0134568899998765 34555555554444456555
Q ss_pred E-EecCcchhccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHH
Q 043056 287 L-TARSLDVLSGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSV 350 (559)
Q Consensus 287 v-TTR~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 350 (559)
+ ||+...+..........+++.+++.++....+...+....... -.+.+..|++.++|..--+
T Consensus 156 L~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i-~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 156 LATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITA-EPEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 5 4444444433344567899999999999999988765322111 1346788999999977533
No 70
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.28 E-value=1.1e-05 Score=76.97 Aligned_cols=165 Identities=9% Similarity=0.061 Sum_probs=93.6
Q ss_pred HHHHHHHHcC-CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChh
Q 043056 162 TLRNILSALE-DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESES 240 (559)
Q Consensus 162 ~~~~l~~~L~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~ 240 (559)
.+..+.++.. ......+.|+|+.|+|||+||+.+++.....+ ....+++...... . +
T Consensus 28 ~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~--~~~~~i~~~~~~~------~----~---------- 85 (227)
T PRK08903 28 LVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGG--RNARYLDAASPLL------A----F---------- 85 (227)
T ss_pred HHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEehHHhHH------H----H----------
Confidence 3444444433 23446789999999999999999999764331 2344554332110 0 0
Q ss_pred hhHHHHHHHHHcCCeEEEEEeCCCcccccc--hhcCCCCC-CCCCc-EEEEEecCcchhcc-------CCCCCCeeecCC
Q 043056 241 GRANSLFKRIKAEKKILIILDNIWENLDLR--VVGIPHGD-GHKDC-KVLLTARSLDVLSG-------KMDSRPNFSIGV 309 (559)
Q Consensus 241 ~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~--~l~~~~~~-~~~gs-~IivTTR~~~va~~-------~~~~~~~~~l~~ 309 (559)
... ...-+|++||+.....+. .+...+.. ...+. .||+|++....... .......+.+.+
T Consensus 86 -------~~~--~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~p 156 (227)
T PRK08903 86 -------DFD--PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKP 156 (227)
T ss_pred -------hhc--ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecC
Confidence 011 223478999997543222 22222211 11233 36666664332111 112246889999
Q ss_pred CCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHh
Q 043056 310 LNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTIARALR 358 (559)
Q Consensus 310 L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~ 358 (559)
+++++-..++.+.+..... .--++..+.+++.+.|++..+..+...+.
T Consensus 157 l~~~~~~~~l~~~~~~~~v-~l~~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 157 LSDADKIAALKAAAAERGL-QLADEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred CCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 9999877777765432111 11245788888999999988877766553
No 71
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.25 E-value=9.7e-06 Score=91.14 Aligned_cols=182 Identities=13% Similarity=0.128 Sum_probs=102.5
Q ss_pred CCCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCC----CCeEEE-EEeCCCcCHHHHHHH
Q 043056 151 KDYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKL----FDQVVF-VEVSQNQDIRKLQGE 225 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~w-v~~s~~~~~~~~~~~ 225 (559)
....+++||+.++.+++..|......-+.++|++|+||||+|..+++....... .+..+| +.++.-..
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a------- 256 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA------- 256 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc-------
Confidence 445789999999999999888666667789999999999999999998643221 122333 33221000
Q ss_pred HHHHhCCCCcCCChhhhHHHHHHHHH-cCCeEEEEEeCCCccc-------ccc--hhcCCCCCCCCCcEEEEEecCcchh
Q 043056 226 IADKLGLKFHEESESGRANSLFKRIK-AEKKILIILDNIWENL-------DLR--VVGIPHGDGHKDCKVLLTARSLDVL 295 (559)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~-------~~~--~l~~~~~~~~~gs~IivTTR~~~va 295 (559)
+ ......-...+..+++.+. .+++.+|++|+++... .-+ .+..+... ....++|-||......
T Consensus 257 -----g-~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~-~G~l~~IgaTT~~e~~ 329 (852)
T TIGR03345 257 -----G-ASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA-RGELRTIAATTWAEYK 329 (852)
T ss_pred -----c-cccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh-CCCeEEEEecCHHHHh
Confidence 0 0000011123334444443 2568999999996542 111 12222222 2234566655542210
Q ss_pred ------ccCCCCCCeeecCCCCHHHHHHHHHHHhCC---CCCCcchHHHHHHHHHHhCCC
Q 043056 296 ------SGKMDSRPNFSIGVLNEEEAWNLFKKMAGD---YIEGSEFQSVARDVAKECAGL 346 (559)
Q Consensus 296 ------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~---~~~~~~~~~~~~~I~~~c~Gl 346 (559)
.........+.+++++.++..++++..... ...-.-..+....+++.+.+.
T Consensus 330 ~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 330 KYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred hhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 111234468999999999999997554421 111111134455666666543
No 72
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.24 E-value=3.2e-05 Score=74.62 Aligned_cols=195 Identities=18% Similarity=0.159 Sum_probs=116.4
Q ss_pred HHHHHHHHHHcC---CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCC----CeEEEEEeCCCcCHHHHHHHHHHHhCC
Q 043056 160 MFTLRNILSALE---DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLF----DQVVFVEVSQNQDIRKLQGEIADKLGL 232 (559)
Q Consensus 160 ~~~~~~l~~~L~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~~~~wv~~s~~~~~~~~~~~i~~~l~~ 232 (559)
...++.|.+.+. ....+-+.|+|.+|.|||++++.+....-....- -.++.|.+...++...+...|+.+++.
T Consensus 43 ~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 43 KEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 445566666555 3345679999999999999999999875432111 247788889999999999999999998
Q ss_pred CCcCCChhhh-HHHHHHHHHcCCeEEEEEeCCCcccc-----cch---hcCCCCCCCCCcEEEEEecCcchhc----cCC
Q 043056 233 KFHEESESGR-ANSLFKRIKAEKKILIILDNIWENLD-----LRV---VGIPHGDGHKDCKVLLTARSLDVLS----GKM 299 (559)
Q Consensus 233 ~~~~~~~~~~-~~~l~~~l~~~kr~LlVlDdv~~~~~-----~~~---l~~~~~~~~~gs~IivTTR~~~va~----~~~ 299 (559)
+......... .......+..-+-=+||+|++.+... -.. ....+...-.=+-|.+-|+.-.-+- ...
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa 202 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLA 202 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHH
Confidence 8755443333 23333444444566999999976421 111 1112211112234566665432210 011
Q ss_pred CCCCeeecCCCCH-HHHHHHHHHHhC----CCCCCcchHHHHHHHHHHhCCChHHHHHHH
Q 043056 300 DSRPNFSIGVLNE-EEAWNLFKKMAG----DYIEGSEFQSVARDVAKECAGLPVSVVTIA 354 (559)
Q Consensus 300 ~~~~~~~l~~L~~-~ea~~Lf~~~~~----~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 354 (559)
.....+.|.+... ++...|+...-. .....-...+++..|...++|+.--+..+-
T Consensus 203 ~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll 262 (302)
T PF05621_consen 203 SRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLL 262 (302)
T ss_pred hccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHH
Confidence 2234666666554 344555544322 111222346789999999999876555443
No 73
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=4e-05 Score=80.79 Aligned_cols=186 Identities=13% Similarity=0.138 Sum_probs=110.1
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCCce-EEEEEcCCCCcHHHHHHHHHHHhcccCCCC-------------------eEE
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPDVN-MLGIYGMGGIGKTMLAEEVARKVKSDKLFD-------------------QVV 209 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-------------------~~~ 209 (559)
|.....++|-+...+.|...+..++.. .+.++|+.|+||||+|+.+.+..-.....+ .++
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~ 89 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDII 89 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEE
Confidence 344566889888888888888766654 568999999999999999988753211110 122
Q ss_pred EEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEE
Q 043056 210 FVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLL 287 (559)
Q Consensus 210 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iiv 287 (559)
.+..+....+.++ ++++...... -..+++-++|+|+++.. ...+.+...+......+++|+
T Consensus 90 eldaas~~gId~I-Relie~~~~~----------------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL 152 (535)
T PRK08451 90 EMDAASNRGIDDI-RELIEQTKYK----------------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFIL 152 (535)
T ss_pred EeccccccCHHHH-HHHHHHHhhC----------------cccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEE
Confidence 2222111112111 1111111000 00145568999999755 334445444444345666666
Q ss_pred EecCc-chhccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 043056 288 TARSL-DVLSGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTI 353 (559)
Q Consensus 288 TTR~~-~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 353 (559)
+|.+. .+..........+++.+++.++....+.+.+......- -.+.+..|++.++|.+--+..+
T Consensus 153 ~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i-~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 153 ATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY-EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred EECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHHH
Confidence 66553 22222233456999999999999999887765322111 1456788999999988444333
No 74
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=2.7e-05 Score=83.34 Aligned_cols=200 Identities=14% Similarity=0.085 Sum_probs=113.5
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCCce-EEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPDVN-MLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIAD 228 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (559)
|.....++|.+..++.|..++..++.. .+.++|+.|+||||+|+.++....-.+..+. - .++.-...+.|..
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~---~----pCg~C~~C~~i~~ 81 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTA---T----PCGVCESCVALAP 81 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCC---C----cccccHHHHHhhc
Confidence 344567889999999999998876655 4689999999999999999987542211110 0 0000000111110
Q ss_pred HhC-------CCCcCCChhhhHHHHHHHHH----cCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEEEe-cCcch
Q 043056 229 KLG-------LKFHEESESGRANSLFKRIK----AEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLLTA-RSLDV 294 (559)
Q Consensus 229 ~l~-------~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTT-R~~~v 294 (559)
.-+ .+.......+.+..+.+.+. .+++-++|+|+++.. ...+.+...+......+.+|++| ....+
T Consensus 82 ~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kl 161 (584)
T PRK14952 82 NGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKV 161 (584)
T ss_pred ccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhh
Confidence 000 00000011222222322221 245568999999754 34555555554444456555544 44444
Q ss_pred hccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh-HHHHHHHHHH
Q 043056 295 LSGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLP-VSVVTIARAL 357 (559)
Q Consensus 295 a~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~~~~L 357 (559)
..........+.+.+++.++..+.+.+.+......- -.+....|++.++|.+ .++..+-.++
T Consensus 162 l~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i-~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 162 LPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV-DDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred HHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 332233457899999999999988887665322111 1345677899999977 4555554443
No 75
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.22 E-value=6.1e-06 Score=82.84 Aligned_cols=91 Identities=16% Similarity=0.198 Sum_probs=63.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCC--cCHHHHHHHHHHHhCCCCcCCChh---h---hHHH-
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQN--QDIRKLQGEIADKLGLKFHEESES---G---RANS- 245 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~---~---~~~~- 245 (559)
-..++|+|++|+|||||++.+++....+ +|+..+|+.+.+. .++.++++.+...+-...-+.+.. . .+..
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 3578999999999999999999988765 8999999999866 788999998854332111111111 1 1111
Q ss_pred HHHHHHcCCeEEEEEeCCCcc
Q 043056 246 LFKRIKAEKKILIILDNIWEN 266 (559)
Q Consensus 246 l~~~l~~~kr~LlVlDdv~~~ 266 (559)
.......+++.+|++|++...
T Consensus 247 Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHcCCCeEEEEEChhHH
Confidence 122223589999999999643
No 76
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=2.7e-05 Score=83.86 Aligned_cols=204 Identities=11% Similarity=0.121 Sum_probs=113.3
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEE-eCCCcCHHHHHHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVE-VSQNQDIRKLQGEIA 227 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i~ 227 (559)
|.....++|.+..+..|..++..+.. ..+.++|+.|+||||+|..+.+...-....+.-.|.. ....+..-...+.+.
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~ 91 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFD 91 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHh
Confidence 34456688999989988888876555 4588999999999999999998764322111001110 000111111111111
Q ss_pred HHhCCCC---c--CCChhhhHHHHHHHHH----cCCeEEEEEeCCCccc--ccchhcCCCCCCCCCcEEEEEe-cCcchh
Q 043056 228 DKLGLKF---H--EESESGRANSLFKRIK----AEKKILIILDNIWENL--DLRVVGIPHGDGHKDCKVLLTA-RSLDVL 295 (559)
Q Consensus 228 ~~l~~~~---~--~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTT-R~~~va 295 (559)
..-..+. + .....+.+..+.+.+. .+++-++|+|+++... ..+.+...+......+.+|++| +...+.
T Consensus 92 ~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl 171 (620)
T PRK14954 92 AGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (620)
T ss_pred ccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 1100000 0 0111233333433331 2455688999987653 3555554544433455555444 434443
Q ss_pred ccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHHH
Q 043056 296 SGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPV-SVVTIA 354 (559)
Q Consensus 296 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~~ 354 (559)
.........+++.+++.++....+.+.+......- -.+.++.|++.++|..- ++..+-
T Consensus 172 ~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I-~~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 172 ATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI-DADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred HHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhCCCHHHHHHHHH
Confidence 22334567899999999999888887664221111 14567889999999664 444443
No 77
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.22 E-value=1.1e-05 Score=83.02 Aligned_cols=173 Identities=19% Similarity=0.276 Sum_probs=99.4
Q ss_pred CCCccchHHHHHHHHHHcC----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCH
Q 043056 153 YLPFESRMFTLRNILSALE----D---------PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDI 219 (559)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 219 (559)
+..+.|++..++++.+.+. . ..++-|.++|++|+|||++|+.+++..... |+.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-------~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-------FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC-------EEEeeh----
Confidence 3457789888888877652 1 345679999999999999999999876532 222211
Q ss_pred HHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc------------c----cchhcCCCC--CCCC
Q 043056 220 RKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL------------D----LRVVGIPHG--DGHK 281 (559)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~------------~----~~~l~~~~~--~~~~ 281 (559)
.++.... .+ ........+.+......+.+|+|||++... . +..+...+. ....
T Consensus 199 ~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 199 SELVQKF---IG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred HHHhHhh---cc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 1111110 00 111223334444444567999999997531 0 111111111 1223
Q ss_pred CcEEEEEecCcchhcc-CC---CCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 043056 282 DCKVLLTARSLDVLSG-KM---DSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLP 347 (559)
Q Consensus 282 gs~IivTTR~~~va~~-~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (559)
+..||.||........ .. .....+.+++.+.++-.++|+.++......... ....+++.+.|.-
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~--~~~~la~~t~g~s 337 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV--DLEELAELTEGAS 337 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcC--CHHHHHHHcCCCC
Confidence 5677878875443211 11 124579999999999999999887643222211 1355677777754
No 78
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.21 E-value=1.1e-05 Score=81.00 Aligned_cols=149 Identities=19% Similarity=0.186 Sum_probs=86.7
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIAD 228 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (559)
|.....++|.+...+.+..++..+.. .++.++|++|+||||+|+.+++.... ....++.+. .... ..+..+.
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~-----~~~~i~~~~-~~~~-~i~~~l~ 89 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA-----EVLFVNGSD-CRID-FVRNRLT 89 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-----cceEeccCc-ccHH-HHHHHHH
Confidence 34556788999999999998876554 56667999999999999999887532 123444443 2221 1111111
Q ss_pred HhCCCCcCCChhhhHHHHHHHH-HcCCeEEEEEeCCCcc--cc-cchhcCCCCCCCCCcEEEEEecCcchh-ccCCCCCC
Q 043056 229 KLGLKFHEESESGRANSLFKRI-KAEKKILIILDNIWEN--LD-LRVVGIPHGDGHKDCKVLLTARSLDVL-SGKMDSRP 303 (559)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~l-~~~kr~LlVlDdv~~~--~~-~~~l~~~~~~~~~gs~IivTTR~~~va-~~~~~~~~ 303 (559)
.+ .... ..+.+-+||+||++.. .. ...+...+.....++++|+||...... ........
T Consensus 90 ~~----------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 90 RF----------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred HH----------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 11 0000 0134568899999754 11 122222232334567888888654321 11122334
Q ss_pred eeecCCCCHHHHHHHHHH
Q 043056 304 NFSIGVLNEEEAWNLFKK 321 (559)
Q Consensus 304 ~~~l~~L~~~ea~~Lf~~ 321 (559)
.+.+...+.++...++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 677778888887766654
No 79
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=5e-05 Score=82.35 Aligned_cols=197 Identities=12% Similarity=0.128 Sum_probs=113.7
Q ss_pred CCCCCccchHHHHHHHHHHcCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 043056 151 KDYLPFESRMFTLRNILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADK 229 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 229 (559)
.....++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+++......... -...++.....+.|...
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~~ 86 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAEG 86 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhcC
Confidence 3455688999999999888876554 4568999999999999999998764221100 00011111222333222
Q ss_pred hCCCC---c--CCChhhhHHHHHHHHH----cCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEEEecC-cchhcc
Q 043056 230 LGLKF---H--EESESGRANSLFKRIK----AEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLLTARS-LDVLSG 297 (559)
Q Consensus 230 l~~~~---~--~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~-~~va~~ 297 (559)
.+.+. . .....+.+..+.+.+. .+++-++|+|+++.. ...+.+...+......+.+|++|.+ ..+...
T Consensus 87 ~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~t 166 (585)
T PRK14950 87 SAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPAT 166 (585)
T ss_pred CCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHH
Confidence 21110 0 0111222333333322 145678999999754 3355554444443445666666543 333222
Q ss_pred CCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHH
Q 043056 298 KMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTIA 354 (559)
Q Consensus 298 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 354 (559)
.......+.+.+++.++....+...+......- -.+.+..|++.++|.+..+....
T Consensus 167 I~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i-~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 167 ILSRCQRFDFHRHSVADMAAHLRKIAAAEGINL-EPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred HHhccceeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 223346788999999999998888765322111 14567889999999986544443
No 80
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.19 E-value=1.5e-05 Score=88.94 Aligned_cols=160 Identities=17% Similarity=0.205 Sum_probs=93.6
Q ss_pred CCCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCC---C-CeEEEEEeCCCcCHHHHHHHH
Q 043056 151 KDYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKL---F-DQVVFVEVSQNQDIRKLQGEI 226 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---f-~~~~wv~~s~~~~~~~~~~~i 226 (559)
....+++||+++++++++.|......-+.++|++|+|||++|+.+++....... + +..+|. + +...+..
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~a-- 251 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLLA-- 251 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHhh--
Confidence 345689999999999999887666667789999999999999999998643221 1 334442 1 1111110
Q ss_pred HHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc----------ccchhcCCCCCCCCCcEEEEEecCcch--
Q 043056 227 ADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL----------DLRVVGIPHGDGHKDCKVLLTARSLDV-- 294 (559)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~----------~~~~l~~~~~~~~~gs~IivTTR~~~v-- 294 (559)
. ......-...+..+.+.+...++.+|++|+++... +...+..+.... ...++|-+|.....
T Consensus 252 --~---~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~-g~i~~IgaTt~~e~~~ 325 (731)
T TIGR02639 252 --G---TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS-GKLRCIGSTTYEEYKN 325 (731)
T ss_pred --h---ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC-CCeEEEEecCHHHHHH
Confidence 0 00001112344455555544568999999997331 111222222111 22345544443111
Q ss_pred ----hccCCCCCCeeecCCCCHHHHHHHHHHHh
Q 043056 295 ----LSGKMDSRPNFSIGVLNEEEAWNLFKKMA 323 (559)
Q Consensus 295 ----a~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 323 (559)
-.........+.+++++.++..++++...
T Consensus 326 ~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 326 HFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 01112234579999999999999998654
No 81
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.18 E-value=9.8e-06 Score=77.05 Aligned_cols=183 Identities=19% Similarity=0.184 Sum_probs=118.9
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCe-EEEEEeCCCcCHHHHHHHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQ-VVFVEVSQNQDIRKLQGEIAD 228 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~~ 228 (559)
|.....+.|-+..+.-|...+.....+....+||+|.|||+-|..++...-..+.|.+ +.-.++|......-+-..+-
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik- 110 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIK- 110 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhc-
Confidence 4456678898989999998888777889999999999999999999988766556655 44456665443321111110
Q ss_pred HhCCCCcCCChhhhHHHHHHHHH-----cCCe-EEEEEeCCCcc--cccchhcCCCCCCCCCcEEEEEecC-cchhccCC
Q 043056 229 KLGLKFHEESESGRANSLFKRIK-----AEKK-ILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLLTARS-LDVLSGKM 299 (559)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~l~-----~~kr-~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~-~~va~~~~ 299 (559)
....+..... .-++ -.+|||+++.. +.|..+...+......++.|+.+.. ..+.....
T Consensus 111 -------------~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 111 -------------NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred -------------CHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 0011111000 0233 47889999865 6788887777665666666555544 33322223
Q ss_pred CCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 043056 300 DSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLP 347 (559)
Q Consensus 300 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (559)
....-++.++|.+++...-++..+......-+ .+..+.|++.++|.-
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d-~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLEKIASKEGVDID-DDALKLIAKISDGDL 224 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcH
Confidence 34457889999999999888887753322222 456788999998854
No 82
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=6.6e-05 Score=78.57 Aligned_cols=182 Identities=12% Similarity=0.114 Sum_probs=109.0
Q ss_pred CCCCCccchHHHHHHHHHHcCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhcccC---------------------CCCeE
Q 043056 151 KDYLPFESRMFTLRNILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKVKSDK---------------------LFDQV 208 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~---------------------~f~~~ 208 (559)
.....++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+.+...... +++ .
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~ 92 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-V 92 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-e
Confidence 4456688999999999998876654 5688999999999999999988754321 111 1
Q ss_pred EEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHH----cCCeEEEEEeCCCcc--cccchhcCCCCCCCCC
Q 043056 209 VFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIK----AEKKILIILDNIWEN--LDLRVVGIPHGDGHKD 282 (559)
Q Consensus 209 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~g 282 (559)
+++........ +.+..+.+.+. .+++-++|+|+++.. ...+.+...+......
T Consensus 93 ~~i~g~~~~gi---------------------d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~ 151 (451)
T PRK06305 93 LEIDGASHRGI---------------------EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQH 151 (451)
T ss_pred EEeeccccCCH---------------------HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCC
Confidence 11111111111 11111221111 245678899998644 2344444444443445
Q ss_pred cEEEEEecC-cchhccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh-HHHHHHHH
Q 043056 283 CKVLLTARS-LDVLSGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLP-VSVVTIAR 355 (559)
Q Consensus 283 s~IivTTR~-~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~~~ 355 (559)
+.+|++|.+ ..+..........+++.+++.++....+...+...... --.+.+..|++.++|.+ .|+..+-.
T Consensus 152 ~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~-i~~~al~~L~~~s~gdlr~a~~~Lek 225 (451)
T PRK06305 152 VKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE-TSREALLPIARAAQGSLRDAESLYDY 225 (451)
T ss_pred ceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 666666543 33322223345689999999999998888776422111 11456788999999976 45544433
No 83
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.14 E-value=2.6e-05 Score=80.31 Aligned_cols=139 Identities=19% Similarity=0.167 Sum_probs=89.3
Q ss_pred chHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCC
Q 043056 158 SRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEE 237 (559)
Q Consensus 158 gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~ 237 (559)
.|.....++.+.+..... ++.|.|+-++||||+++.+....... .++++.-....-..-+.+..+
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d~~~--------- 85 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLDLLR--------- 85 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHHHHH---------
Confidence 344556667766654333 99999999999999996666554332 555543322111111111111
Q ss_pred ChhhhHHHHHHHHHcCCeEEEEEeCCCcccccchhcCCCCCCCCCcEEEEEecCcchh-----ccCCCCCCeeecCCCCH
Q 043056 238 SESGRANSLFKRIKAEKKILIILDNIWENLDLRVVGIPHGDGHKDCKVLLTARSLDVL-----SGKMDSRPNFSIGVLNE 312 (559)
Q Consensus 238 ~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~va-----~~~~~~~~~~~l~~L~~ 312 (559)
.. ..+...++..++||.|+....|......+.+..+. +|++|+-+.... ....+....+.+-||+.
T Consensus 86 -------~~-~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF 156 (398)
T COG1373 86 -------AY-IELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSF 156 (398)
T ss_pred -------HH-HHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCH
Confidence 11 11111267899999999999999887777776666 888888765543 22345567999999999
Q ss_pred HHHHHHHH
Q 043056 313 EEAWNLFK 320 (559)
Q Consensus 313 ~ea~~Lf~ 320 (559)
.|-..+-.
T Consensus 157 ~Efl~~~~ 164 (398)
T COG1373 157 REFLKLKG 164 (398)
T ss_pred HHHHhhcc
Confidence 99877543
No 84
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.13 E-value=7.4e-05 Score=78.16 Aligned_cols=167 Identities=14% Similarity=0.113 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCe
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKK 255 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 255 (559)
..+.|+|..|+|||+|++.+.+.......-..+++++ ..++...+...++.. ......+.+.+. ..
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~------~~~~~~~~~~~~--~~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKT------HKEIEQFKNEIC--QN 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHh------hhHHHHHHHHhc--cC
Confidence 4588999999999999999999765432223455554 345666666655321 012233444433 34
Q ss_pred EEEEEeCCCccc---ccc-hhcCCCCC-CCCCcEEEEEecCcchh--------ccCCCCCCeeecCCCCHHHHHHHHHHH
Q 043056 256 ILIILDNIWENL---DLR-VVGIPHGD-GHKDCKVLLTARSLDVL--------SGKMDSRPNFSIGVLNEEEAWNLFKKM 322 (559)
Q Consensus 256 ~LlVlDdv~~~~---~~~-~l~~~~~~-~~~gs~IivTTR~~~va--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 322 (559)
-+||+||+.... .+. .+...+.. ...|..||+|+...... .......-++.+++++.++-..++.+.
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 589999996542 122 22111111 12344688887643211 111234457889999999999999998
Q ss_pred hCCCCC-CcchHHHHHHHHHHhCCChHHHHHHHHH
Q 043056 323 AGDYIE-GSEFQSVARDVAKECAGLPVSVVTIARA 356 (559)
Q Consensus 323 ~~~~~~-~~~~~~~~~~I~~~c~GlPLai~~~~~~ 356 (559)
+..... ..--+++..-|++.++|.|-.+.-+...
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 853211 1223678889999999999776655433
No 85
>PRK05642 DNA replication initiation factor; Validated
Probab=98.13 E-value=5.6e-05 Score=72.11 Aligned_cols=152 Identities=13% Similarity=0.164 Sum_probs=90.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCe
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKK 255 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 255 (559)
..+.|+|+.|+|||.|++.+++....+ -..++|++... +... ...+.+.+.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~-----------------~~~~~~~~~~~-- 98 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR-----------------GPELLDNLEQY-- 98 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh-----------------hHHHHHhhhhC--
Confidence 578999999999999999998876543 23467776432 1111 01233334321
Q ss_pred EEEEEeCCCcc---cccch-hcCCCCC-CCCCcEEEEEecCcchh-c-------cCCCCCCeeecCCCCHHHHHHHHHHH
Q 043056 256 ILIILDNIWEN---LDLRV-VGIPHGD-GHKDCKVLLTARSLDVL-S-------GKMDSRPNFSIGVLNEEEAWNLFKKM 322 (559)
Q Consensus 256 ~LlVlDdv~~~---~~~~~-l~~~~~~-~~~gs~IivTTR~~~va-~-------~~~~~~~~~~l~~L~~~ea~~Lf~~~ 322 (559)
=+|++||+... ..|.. +...+.. ...|..+|+|++...-. . .......++.+++++.++-..+++.+
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 27889999633 34443 2222111 12356788888754321 1 01123367899999999999999866
Q ss_pred hCCCCCCcchHHHHHHHHHHhCCChHHHHHHHH
Q 043056 323 AGDYIEGSEFQSVARDVAKECAGLPVSVVTIAR 355 (559)
Q Consensus 323 ~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~ 355 (559)
+....- .--+++..-|++++.|..-.+..+-.
T Consensus 179 a~~~~~-~l~~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 179 ASRRGL-HLTDEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHHcCC-CCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 542211 11156778888888887655544433
No 86
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=9.6e-05 Score=77.88 Aligned_cols=182 Identities=13% Similarity=0.108 Sum_probs=107.3
Q ss_pred CCCCCccchHHHHHHHHHHcCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhcccC-------------------CCCeEEE
Q 043056 151 KDYLPFESRMFTLRNILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKVKSDK-------------------LFDQVVF 210 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~w 210 (559)
.....++|.+.....|..++..+.. ..+.++|+.|+||||+|+.++......+ .+...++
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~e 92 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIE 92 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEE
Confidence 3455688999999999998876554 4567899999999999999988753210 0111222
Q ss_pred EEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHH----cCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcE
Q 043056 211 VEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIK----AEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCK 284 (559)
Q Consensus 211 v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ 284 (559)
+..+.... .+.+..+.+... .+++-++|+|+++.. ...+.+...+........
T Consensus 93 idaas~~g---------------------vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 93 IDAASNRG---------------------IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred EeCccCCC---------------------HHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 22211111 111222222221 256679999999754 234444444433334455
Q ss_pred EEEEe-cCcchhccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHH
Q 043056 285 VLLTA-RSLDVLSGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTIA 354 (559)
Q Consensus 285 IivTT-R~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 354 (559)
+|++| +...+..........+.+.+++.++....+...+....... -.+.+..|++.++|.+-.+....
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i-d~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY-EEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 55544 43333221223345899999999999988888764221111 14567788899999775444443
No 87
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=0.0002 Score=71.23 Aligned_cols=194 Identities=11% Similarity=0.138 Sum_probs=111.7
Q ss_pred CCccchHHHHHHHHHHcCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhccc--------------CCCCeEEEEEeCCCcC
Q 043056 154 LPFESRMFTLRNILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKVKSD--------------KLFDQVVFVEVSQNQD 218 (559)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~--------------~~f~~~~wv~~s~~~~ 218 (559)
..++|.+...+.+...+..++ .....++|+.|+||+++|..+.+..-.. +|.| ..|+.-.....
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEecccccc
Confidence 457899999999999887666 4789999999999999999998875322 1222 23332110000
Q ss_pred HHHHHHHHHHHhCC--CCcCCChhhhHHHHHHHHH----cCCeEEEEEeCCCccc--ccchhcCCCCCCCCCcEEEEEe-
Q 043056 219 IRKLQGEIADKLGL--KFHEESESGRANSLFKRIK----AEKKILIILDNIWENL--DLRVVGIPHGDGHKDCKVLLTA- 289 (559)
Q Consensus 219 ~~~~~~~i~~~l~~--~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTT- 289 (559)
-..+-..-+...+. .....-..+.+..+.+.+. .+++-++|+|+++... ..+.+...+-... .+.+|++|
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred ccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEEC
Confidence 00000001111110 0001112233445555543 2566789999986543 3444443333222 33455444
Q ss_pred cCcchhccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 043056 290 RSLDVLSGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTI 353 (559)
Q Consensus 290 R~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 353 (559)
....+..........+++.+++.++..+.+......... ......++..++|.|..+...
T Consensus 162 ~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~----~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 162 SPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL----NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred ChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc----hhHHHHHHHHcCCCHHHHHHH
Confidence 444444434455679999999999999999987532111 111357899999999655443
No 88
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.13 E-value=0.00024 Score=71.63 Aligned_cols=208 Identities=13% Similarity=0.087 Sum_probs=130.3
Q ss_pred CCCCCccchHHHHHHHHHHcC----CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHH
Q 043056 151 KDYLPFESRMFTLRNILSALE----DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEI 226 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 226 (559)
.....+.||+.+++.+.+++. .+..+.+-|.|-+|.|||.+...++.+......--.+++++...-.....++..|
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 345668999999999988875 4567889999999999999999999987654222356777777656677788888
Q ss_pred HHHhCCC-CcCCChhhhHHHHHHHHHcCC-eEEEEEeCCCcccc--cchhcCCCCC-CCCCcEEEEE---------ecCc
Q 043056 227 ADKLGLK-FHEESESGRANSLFKRIKAEK-KILIILDNIWENLD--LRVVGIPHGD-GHKDCKVLLT---------ARSL 292 (559)
Q Consensus 227 ~~~l~~~-~~~~~~~~~~~~l~~~l~~~k-r~LlVlDdv~~~~~--~~~l~~~~~~-~~~gs~IivT---------TR~~ 292 (559)
...+-.. .......+....+..+..+.+ .+|+|+|..+.... -..+-..|.+ .-+++++|+. -|.-
T Consensus 227 ~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~L 306 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFL 306 (529)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHh
Confidence 7776211 111112333445555555544 78999999864321 1111111111 2235554432 1211
Q ss_pred chhcc-CCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHh
Q 043056 293 DVLSG-KMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTIARALR 358 (559)
Q Consensus 293 ~va~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~ 358 (559)
.-+.. ..-....+...|.+.++..++|..++......+.....++-+++||.|.---+..+....+
T Consensus 307 prL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 307 PRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred hhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 11111 1123357788999999999999999875555555555666677777776655555555554
No 89
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=5.2e-05 Score=82.25 Aligned_cols=183 Identities=13% Similarity=0.126 Sum_probs=109.6
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCC----e------------EEEEE
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFD----Q------------VVFVE 212 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~----~------------~~wv~ 212 (559)
|.....++|.+..++.|..++..++ ...+.++|+.|+||||+|+.++...-..+..+ | ++++.
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieid 93 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMD 93 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEe
Confidence 3445568899999999999887655 44668999999999999999988753221100 0 01111
Q ss_pred eCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHH----cCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEE
Q 043056 213 VSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIK----AEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVL 286 (559)
Q Consensus 213 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Ii 286 (559)
.... ...+.+..+.+.+. .+++-++|+|+++.. ..+..+...+......+.+|
T Consensus 94 aasn---------------------~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifI 152 (725)
T PRK07133 94 AASN---------------------NGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFI 152 (725)
T ss_pred cccc---------------------CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEE
Confidence 1000 11222333333332 255669999999754 34555554443333445444
Q ss_pred -EEecCcchhccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHHH
Q 043056 287 -LTARSLDVLSGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPV-SVVTIA 354 (559)
Q Consensus 287 -vTTR~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~~ 354 (559)
+|++...+..........+++.+++.++....+...+....... -.+.+..|++.++|.+- |+..+-
T Consensus 153 LaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i-d~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 153 LATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISY-EKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred EEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45444444332334456899999999999988887654221111 13457789999999774 444443
No 90
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.13 E-value=1.6e-05 Score=77.42 Aligned_cols=135 Identities=16% Similarity=0.221 Sum_probs=70.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcC
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAE 253 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (559)
....+.++|++|+||||+|+.+++.......-....++.++.. ++.... . ... ......+.+. .
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~----~l~~~~---~-----g~~-~~~~~~~~~~---a 104 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA----DLVGEY---I-----GHT-AQKTREVIKK---A 104 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH----Hhhhhh---c-----cch-HHHHHHHHHh---c
Confidence 4567889999999999999999887532211111122332221 111110 0 010 1111222222 2
Q ss_pred CeEEEEEeCCCccc----------ccchhcCCCCCCCCCcEEEEEecCcchh------ccCCC-CCCeeecCCCCHHHHH
Q 043056 254 KKILIILDNIWENL----------DLRVVGIPHGDGHKDCKVLLTARSLDVL------SGKMD-SRPNFSIGVLNEEEAW 316 (559)
Q Consensus 254 kr~LlVlDdv~~~~----------~~~~l~~~~~~~~~gs~IivTTR~~~va------~~~~~-~~~~~~l~~L~~~ea~ 316 (559)
...+|++|+++... ..+.+...+........+|+++...... ..... ....+.+++++.++-.
T Consensus 105 ~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~ 184 (261)
T TIGR02881 105 LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELM 184 (261)
T ss_pred cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHH
Confidence 23589999997532 2233333333333334555555432210 00111 2346889999999999
Q ss_pred HHHHHHhC
Q 043056 317 NLFKKMAG 324 (559)
Q Consensus 317 ~Lf~~~~~ 324 (559)
+++.+.+.
T Consensus 185 ~Il~~~~~ 192 (261)
T TIGR02881 185 EIAERMVK 192 (261)
T ss_pred HHHHHHHH
Confidence 99988775
No 91
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.12 E-value=2.9e-05 Score=87.63 Aligned_cols=157 Identities=18% Similarity=0.260 Sum_probs=92.5
Q ss_pred CCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCC----CeEEEEEeCCCcCHHHHHHHHHH
Q 043056 153 YLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLF----DQVVFVEVSQNQDIRKLQGEIAD 228 (559)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~~~~wv~~s~~~~~~~~~~~i~~ 228 (559)
..+++||+++++++++.|......-+.++|++|+|||++|..++......... +..+|. + +...++ .
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~----a 248 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL----A 248 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh----c
Confidence 46789999999999999986555567899999999999999999886432111 234442 1 111111 0
Q ss_pred HhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc---------ccchhcCCCCCCCCCcEEEEEecCcch----h
Q 043056 229 KLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL---------DLRVVGIPHGDGHKDCKVLLTARSLDV----L 295 (559)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~---------~~~~l~~~~~~~~~gs~IivTTR~~~v----a 295 (559)
+... ...-.+.+..+++.+...++.+|++|+++... +...+..+.... ...++|.+|..... .
T Consensus 249 --g~~~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g~l~~IgaTt~~ey~~~ie 324 (821)
T CHL00095 249 --GTKY-RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-GELQCIGATTLDEYRKHIE 324 (821)
T ss_pred --cCCC-ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-CCcEEEEeCCHHHHHHHHh
Confidence 1111 11122344556666555678999999996321 111222222111 22455555543321 0
Q ss_pred --ccCCCCCCeeecCCCCHHHHHHHHHHH
Q 043056 296 --SGKMDSRPNFSIGVLNEEEAWNLFKKM 322 (559)
Q Consensus 296 --~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 322 (559)
.........+.+...+.++...+++..
T Consensus 325 ~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 325 KDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred cCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 112233457888999999988888654
No 92
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.12 E-value=0.00047 Score=65.20 Aligned_cols=180 Identities=14% Similarity=0.114 Sum_probs=104.1
Q ss_pred cCCCCCccchHHHHHHHHHHcC-----CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALE-----DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQG 224 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 224 (559)
|.....|+|.++..++|-=.+. +...--+.++||+|.||||||.-+++...++ + -++.++..
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~----k~tsGp~l------- 88 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--L----KITSGPAL------- 88 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--e----Eecccccc-------
Confidence 4556779998887777654443 4567789999999999999999999988765 1 11111110
Q ss_pred HHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcccc---------cchhcC-CCCCCCCC-----------c
Q 043056 225 EIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENLD---------LRVVGI-PHGDGHKD-----------C 283 (559)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~---------~~~l~~-~~~~~~~g-----------s 283 (559)
.....+..++..|. ..=+|++|.++.... .+++.. .....+++ .
T Consensus 89 -------------eK~gDlaaiLt~Le--~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 89 -------------EKPGDLAAILTNLE--EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred -------------cChhhHHHHHhcCC--cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 11112223333333 334666677653310 111100 00011122 2
Q ss_pred EEEEEecCcchhccC-CCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHh
Q 043056 284 KVLLTARSLDVLSGK-MDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTIARALR 358 (559)
Q Consensus 284 ~IivTTR~~~va~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~ 358 (559)
-|=.|||.-.+.... -....+.+++-.+.+|-.++..+.+..-... -.++.+.+|+++..|-|--..-+.+..+
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~-i~~~~a~eIA~rSRGTPRIAnRLLrRVR 228 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIE-IDEEAALEIARRSRGTPRIANRLLRRVR 228 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCC-CChHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 344688865543211 1234578899999999999999887521111 1145688999999999954444444333
No 93
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=4.9e-05 Score=82.07 Aligned_cols=200 Identities=13% Similarity=0.145 Sum_probs=112.2
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIAD 228 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (559)
|.....++|.+...+.|..++..++. ..+.++|+.|+||||+|+.+.+...-.+..+. ..++.-.....|..
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~~ 84 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEITE 84 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHhc
Confidence 34456788999989999988876655 45689999999999999999887542211100 00000011111110
Q ss_pred HhCCC-----CcCCChhhhHHHHHHHHH----cCCeEEEEEeCCCccc--ccchhcCCCCCCCCCcEEEEEe-cCcchhc
Q 043056 229 KLGLK-----FHEESESGRANSLFKRIK----AEKKILIILDNIWENL--DLRVVGIPHGDGHKDCKVLLTA-RSLDVLS 296 (559)
Q Consensus 229 ~l~~~-----~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTT-R~~~va~ 296 (559)
.-..+ .......+.+..+.+.+. .+++-++|+|+++... ..+.+...+......+.+|++| ....+..
T Consensus 85 g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~ 164 (576)
T PRK14965 85 GRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPI 164 (576)
T ss_pred CCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhH
Confidence 00000 000011122333333322 2445688999997553 3444544443334455555544 4444443
Q ss_pred cCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh-HHHHHHHHHH
Q 043056 297 GKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLP-VSVVTIARAL 357 (559)
Q Consensus 297 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~~~~L 357 (559)
........+++.+++.++....+...+......-+ .+....|++.++|.. .|+..+-.++
T Consensus 165 tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~-~~al~~la~~a~G~lr~al~~Ldqli 225 (576)
T PRK14965 165 TILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS-DAALALVARKGDGSMRDSLSTLDQVL 225 (576)
T ss_pred HHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 23344568899999999998888876642221111 456778899999976 5555554443
No 94
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.09 E-value=5.2e-05 Score=79.53 Aligned_cols=160 Identities=18% Similarity=0.257 Sum_probs=90.3
Q ss_pred CCCccchHHHHHHHHHHcC-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhcccC---CCCeEEEEEeCCC
Q 043056 153 YLPFESRMFTLRNILSALE-------------DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDK---LFDQVVFVEVSQN 216 (559)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~f~~~~wv~~s~~ 216 (559)
+..+.|.+..++++.+.+. -..++-+.++|++|+|||++|+.+++.....- ......|+++...
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~ 260 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP 260 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch
Confidence 4456678888887776642 12356689999999999999999999875321 1123445554432
Q ss_pred cCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHH----HHcCCeEEEEEeCCCccc---------c-----cchhcCCCCC
Q 043056 217 QDIRKLQGEIADKLGLKFHEESESGRANSLFKR----IKAEKKILIILDNIWENL---------D-----LRVVGIPHGD 278 (559)
Q Consensus 217 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~----l~~~kr~LlVlDdv~~~~---------~-----~~~l~~~~~~ 278 (559)
. ++.. ..... ...+..+++. ...+++++|+||+++... + ...+...+..
T Consensus 261 e----Ll~k--------yvGet-e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDg 327 (512)
T TIGR03689 261 E----LLNK--------YVGET-ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDG 327 (512)
T ss_pred h----hccc--------ccchH-HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcc
Confidence 1 1000 00000 1111222222 223578999999997431 1 1122222211
Q ss_pred --CCCCcEEEEEecCcchhc-cCC---CCCCeeecCCCCHHHHHHHHHHHhCC
Q 043056 279 --GHKDCKVLLTARSLDVLS-GKM---DSRPNFSIGVLNEEEAWNLFKKMAGD 325 (559)
Q Consensus 279 --~~~gs~IivTTR~~~va~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~ 325 (559)
...+..||.||....... ... .-...|.+++.+.++..++|+.++..
T Consensus 328 l~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 328 VESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred cccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 123455666775544331 112 22346899999999999999998753
No 95
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.08 E-value=2.1e-05 Score=74.16 Aligned_cols=160 Identities=19% Similarity=0.168 Sum_probs=94.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCC
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEK 254 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 254 (559)
...+.|+|+.|+|||.|.+.+++.......-..++|++ ..++...+...+.. .....+.+.+. .
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~--------~~~~~~~~~~~--~ 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRD--------GEIEEFKDRLR--S 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHT--------TSHHHHHHHHC--T
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHc--------ccchhhhhhhh--c
Confidence 34688999999999999999999876543223466764 44555555555432 12344555554 3
Q ss_pred eEEEEEeCCCcccc---cchh----cCCCCCCCCCcEEEEEecCcchh-c-------cCCCCCCeeecCCCCHHHHHHHH
Q 043056 255 KILIILDNIWENLD---LRVV----GIPHGDGHKDCKVLLTARSLDVL-S-------GKMDSRPNFSIGVLNEEEAWNLF 319 (559)
Q Consensus 255 r~LlVlDdv~~~~~---~~~l----~~~~~~~~~gs~IivTTR~~~va-~-------~~~~~~~~~~l~~L~~~ea~~Lf 319 (559)
-=+|++||++.... |... ...+ ...|-+||+|+....-. . ......-++.+++++.++-..++
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~--~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il 175 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRL--IESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRIL 175 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHH--HHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHH
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHH--HhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHH
Confidence 45899999976422 3221 1111 12356899999654321 1 11234558999999999999999
Q ss_pred HHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 043056 320 KKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTI 353 (559)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 353 (559)
.+.+....-. --+++++-|++.+.+..-.+..+
T Consensus 176 ~~~a~~~~~~-l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 176 QKKAKERGIE-LPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHHTT---S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred HHHHHHhCCC-CcHHHHHHHHHhhcCCHHHHHHH
Confidence 9887522111 12456777777777665554443
No 96
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=0.0001 Score=78.95 Aligned_cols=194 Identities=13% Similarity=0.152 Sum_probs=110.4
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIAD 228 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (559)
|.....++|-+..+..|..++..++. ..+.++|+.|+||||+|+.+++........... .+....+- +.|..
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~---pC~~C~~C----~~i~~ 84 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPM---PCGECSSC----KSIDN 84 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCC---CCccchHH----HHHHc
Confidence 34456688999999999998876554 468899999999999999999876432111000 00000000 11111
Q ss_pred HhCCC---Cc--CCChhhhHHHHHHHHH----cCCeEEEEEeCCCccc--ccchhcCCCCCCCCCcEEEEEecC-cchhc
Q 043056 229 KLGLK---FH--EESESGRANSLFKRIK----AEKKILIILDNIWENL--DLRVVGIPHGDGHKDCKVLLTARS-LDVLS 296 (559)
Q Consensus 229 ~l~~~---~~--~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~-~~va~ 296 (559)
.-..+ .+ .....+.+..+.+.+. .+++-++|+|+++... .++.+...+......+.+|++|.+ ..+..
T Consensus 85 ~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~ 164 (563)
T PRK06647 85 DNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPA 164 (563)
T ss_pred CCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHH
Confidence 00000 00 0011122222322221 2456689999997553 455665555544455666555543 33322
Q ss_pred cCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHH
Q 043056 297 GKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVV 351 (559)
Q Consensus 297 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 351 (559)
........+++.+++.++....+...+...... --.+.+..|++.++|.+-.+.
T Consensus 165 tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~-id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 165 TIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK-YEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred HHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 223345578999999999998888776422211 124567789999999885433
No 97
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=0.00017 Score=77.57 Aligned_cols=192 Identities=12% Similarity=0.093 Sum_probs=109.1
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIAD 228 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (559)
|.....++|.+...+.|..++..++ ...+.++|+.|+||||+|+.+.......+..+. ..++.-...+.|..
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~-------~pC~~C~~C~~i~~ 84 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG-------EPCNECEICKAITN 84 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCccHHHHHHhc
Confidence 4456678999999999999887554 455778999999999999999877542211100 01111111111211
Q ss_pred HhCCCC-----cCCChhhhHHHHHHHHH----cCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEEEe-cCcchhc
Q 043056 229 KLGLKF-----HEESESGRANSLFKRIK----AEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLLTA-RSLDVLS 296 (559)
Q Consensus 229 ~l~~~~-----~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTT-R~~~va~ 296 (559)
....+. ......+.+..+.+... .++.-++|+|+++.. ..+..+...+......+.+|++| ....+..
T Consensus 85 g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~ 164 (559)
T PRK05563 85 GSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPA 164 (559)
T ss_pred CCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcH
Confidence 111100 00011222333333322 256678899999755 34555554443333444445444 4343332
Q ss_pred cCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHH
Q 043056 297 GKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVS 349 (559)
Q Consensus 297 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa 349 (559)
........+.+.+++.++....+...+......-+ .+.+..|++.++|.+.-
T Consensus 165 tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~-~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 165 TILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE-DEALRLIARAAEGGMRD 216 (559)
T ss_pred HHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHH
Confidence 22334567889999999999988887642211111 45677888899887753
No 98
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=0.00013 Score=79.00 Aligned_cols=197 Identities=13% Similarity=0.061 Sum_probs=112.3
Q ss_pred CCCCCccchHHHHHHHHHHcCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 043056 151 KDYLPFESRMFTLRNILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADK 229 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 229 (559)
.....++|.+.....|..++..++ ...+.++|+.|+||||+|+.++........... . ...+..-...+.+...
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-~----~~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-T----PEPCGKCELCRAIAAG 87 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-C----CCCCcccHHHHHHhcC
Confidence 345568899998999988887654 357889999999999999999998653211100 0 0111111222222222
Q ss_pred hCCCC-----cCCChhhhHHHHHHHHH----cCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEEEecC-cchhcc
Q 043056 230 LGLKF-----HEESESGRANSLFKRIK----AEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLLTARS-LDVLSG 297 (559)
Q Consensus 230 l~~~~-----~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~-~~va~~ 297 (559)
...+. ......+.+..+.+.+. .+++-++|+|+++.. ..++.+...+......+.+|++|.+ ..+...
T Consensus 88 ~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 88 NALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred CCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHH
Confidence 11110 01112223333333332 245568899999755 3455555555443344555555543 333222
Q ss_pred CCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 043056 298 KMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTI 353 (559)
Q Consensus 298 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 353 (559)
.......+.+.+++.++....+.+.+......- -.+.+..|++.++|.+..+..+
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i-s~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI-EPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 233456788899999998888877664321111 1345788999999988544433
No 99
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.99 E-value=3.7e-05 Score=78.56 Aligned_cols=107 Identities=21% Similarity=0.208 Sum_probs=72.9
Q ss_pred CCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCC
Q 043056 154 LPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLK 233 (559)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 233 (559)
..+++.+..++.+...|... +.|.++|++|+|||++|+.+++.......|+.+.||++++..+..+++..+.- .
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP----~ 248 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRP----N 248 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCC----C
Confidence 44677888899999888743 56888999999999999999998876667888999999998887766543210 0
Q ss_pred CcCCC-hhhhHHHHHHHHH--cCCeEEEEEeCCCcc
Q 043056 234 FHEES-ESGRANSLFKRIK--AEKKILIILDNIWEN 266 (559)
Q Consensus 234 ~~~~~-~~~~~~~l~~~l~--~~kr~LlVlDdv~~~ 266 (559)
..+-. .......+..... .+++++||+|++...
T Consensus 249 ~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 249 GVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred CCCeEecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 00000 0111112222222 246899999999644
No 100
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.98 E-value=0.00033 Score=72.87 Aligned_cols=180 Identities=19% Similarity=0.161 Sum_probs=104.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCe
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKK 255 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 255 (559)
..+.|+|+.|+|||+|++.+++....+..-..+++++. .++...+...+... ....+.+.+. +.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~--------~~~~~~~~~~--~~ 200 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN--------KMEEFKEKYR--SV 200 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC--------CHHHHHHHHH--hC
Confidence 46889999999999999999998765422234666653 33444455444321 1223444443 23
Q ss_pred EEEEEeCCCcccc---cc-hhcCCCCC-CCCCcEEEEEecCcchh--------ccCCCCCCeeecCCCCHHHHHHHHHHH
Q 043056 256 ILIILDNIWENLD---LR-VVGIPHGD-GHKDCKVLLTARSLDVL--------SGKMDSRPNFSIGVLNEEEAWNLFKKM 322 (559)
Q Consensus 256 ~LlVlDdv~~~~~---~~-~l~~~~~~-~~~gs~IivTTR~~~va--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 322 (559)
-+|+|||++.... +. .+...+.. ...+..+|+|+....-. ...+.....+.+++.+.++-..++.+.
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 4899999975321 11 12111111 11345678877642211 112233457899999999999999998
Q ss_pred hCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHh------cC--ChHHHHHHHHHh
Q 043056 323 AGDYIEGSEFQSVARDVAKECAGLPVSVVTIARALR------NK--RLFEWKDALEQL 372 (559)
Q Consensus 323 ~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~------~~--~~~~w~~~l~~l 372 (559)
+...... --+++...|++.+.|.+-.+.-+-..|. ++ +....+.++..+
T Consensus 281 ~~~~~~~-l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 281 AEEEGLE-LPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDL 337 (405)
T ss_pred HHHcCCC-CCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 8632221 1256788899999987764433322221 12 555666666654
No 101
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.98 E-value=0.00013 Score=71.81 Aligned_cols=132 Identities=15% Similarity=0.118 Sum_probs=71.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeE
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKI 256 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~ 256 (559)
-+.++|++|+|||++|+.++...........--++.++. .++ ...+.. ... .....+.+.. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g----~~~-~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIG----HTA-PKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhcc----cch-HHHHHHHHHc---cCc
Confidence 688999999999999988877654332221112443332 122 211111 111 1122233332 346
Q ss_pred EEEEeCCCcc-----------cccchhcCCCCCCCCCcEEEEEecCcchhcc-------CCCCCCeeecCCCCHHHHHHH
Q 043056 257 LIILDNIWEN-----------LDLRVVGIPHGDGHKDCKVLLTARSLDVLSG-------KMDSRPNFSIGVLNEEEAWNL 318 (559)
Q Consensus 257 LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~IivTTR~~~va~~-------~~~~~~~~~l~~L~~~ea~~L 318 (559)
+|+||++... ..+..+...+.....+.+||+++.....-.. .......+.+++++.+|-..+
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8999999632 1123333333334455667776653321100 011235789999999999999
Q ss_pred HHHHhC
Q 043056 319 FKKMAG 324 (559)
Q Consensus 319 f~~~~~ 324 (559)
+...+.
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 988774
No 102
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.96 E-value=0.00012 Score=75.23 Aligned_cols=173 Identities=18% Similarity=0.243 Sum_probs=96.5
Q ss_pred CCCccchHHHHHHHHHHcC----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCH
Q 043056 153 YLPFESRMFTLRNILSALE----D---------PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDI 219 (559)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 219 (559)
...+.|-+...++|.+.+. . ..++-+.++|++|+|||+||+.+++..... | +.+. .
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~--f---i~i~--~---- 212 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT--F---IRVV--G---- 212 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E---EEEe--h----
Confidence 4456677777666665442 1 245779999999999999999999875432 2 1221 1
Q ss_pred HHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc------------c----cchhcCCCC--CCCC
Q 043056 220 RKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL------------D----LRVVGIPHG--DGHK 281 (559)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~------------~----~~~l~~~~~--~~~~ 281 (559)
..+... .++ . ....+..++.......+.+|+||+++... . +..+...+. ....
T Consensus 213 s~l~~k---~~g-----e-~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~ 283 (398)
T PTZ00454 213 SEFVQK---YLG-----E-GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT 283 (398)
T ss_pred HHHHHH---hcc-----h-hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC
Confidence 111111 111 0 11223344444445678999999986421 0 111111111 1234
Q ss_pred CcEEEEEecCcchhc-cCC---CCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 043056 282 DCKVLLTARSLDVLS-GKM---DSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLP 347 (559)
Q Consensus 282 gs~IivTTR~~~va~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (559)
+..||.||....... ... .-...+.+...+.++-..+|+.........++. -..++++.+.|..
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv--d~~~la~~t~g~s 351 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV--DLEDFVSRPEKIS 351 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc--CHHHHHHHcCCCC
Confidence 567888887654331 112 224578899999999888888776532222211 1345667777664
No 103
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.96 E-value=0.00019 Score=71.73 Aligned_cols=155 Identities=13% Similarity=0.138 Sum_probs=92.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccC--------------------CCCeEEEEEeCCCcCHHHHHHHHHHHhCCCC
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDK--------------------LFDQVVFVEVSQNQDIRKLQGEIADKLGLKF 234 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 234 (559)
...+.++|+.|+||||+|..++...--.+ |.| ..|+.-...
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~~~~~------------------ 82 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPD-NFVLEPEEA------------------ 82 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccCC------------------
Confidence 45688999999999999999998754321 112 112211000
Q ss_pred cCCChhhhHHHHHHHHH----cCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEEEecCc-chhccCCCCCCeeec
Q 043056 235 HEESESGRANSLFKRIK----AEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLLTARSL-DVLSGKMDSRPNFSI 307 (559)
Q Consensus 235 ~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~-~va~~~~~~~~~~~l 307 (559)
...-..+.+..+.+.+. .+++-++|+|+++.. ...+.+...+.....++.+|+||.+. .+..........+.+
T Consensus 83 ~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~ 162 (328)
T PRK05707 83 DKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQAC 162 (328)
T ss_pred CCCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeC
Confidence 00011223333333332 234445577999764 34555544444444567777777764 343333445678999
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 043056 308 GVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTI 353 (559)
Q Consensus 308 ~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 353 (559)
.+++.+++.+.+...... . ..+.+..++..++|.|+....+
T Consensus 163 ~~~~~~~~~~~L~~~~~~-~----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 163 PLPSNEESLQWLQQALPE-S----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CCcCHHHHHHHHHHhccc-C----ChHHHHHHHHHcCCCHHHHHHH
Confidence 999999999999876421 1 1234567889999999755443
No 104
>CHL00181 cbbX CbbX; Provisional
Probab=97.95 E-value=0.00018 Score=70.61 Aligned_cols=133 Identities=14% Similarity=0.152 Sum_probs=72.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCe
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKK 255 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 255 (559)
..+.++|++|+||||+|+.++........-...-|+.++. .++.... .+. .. .....+.+.. ..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l~~~~---~g~-----~~-~~~~~~l~~a---~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDLVGQY---IGH-----TA-PKTKEVLKKA---MG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHHHHHH---hcc-----ch-HHHHHHHHHc---cC
Confidence 3588999999999999999988654322111112444431 1222211 111 11 1112222222 23
Q ss_pred EEEEEeCCCcc-----------cccchhcCCCCCCCCCcEEEEEecCcchhc-------cCCCCCCeeecCCCCHHHHHH
Q 043056 256 ILIILDNIWEN-----------LDLRVVGIPHGDGHKDCKVLLTARSLDVLS-------GKMDSRPNFSIGVLNEEEAWN 317 (559)
Q Consensus 256 ~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~IivTTR~~~va~-------~~~~~~~~~~l~~L~~~ea~~ 317 (559)
-+|+||++... .....+...+.....+.+||+++....+.. ........+.+++++.++..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 59999999642 112223333333444567777775433210 011234588999999999999
Q ss_pred HHHHHhC
Q 043056 318 LFKKMAG 324 (559)
Q Consensus 318 Lf~~~~~ 324 (559)
++...+.
T Consensus 204 I~~~~l~ 210 (287)
T CHL00181 204 IAKIMLE 210 (287)
T ss_pred HHHHHHH
Confidence 9888774
No 105
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.95 E-value=4e-05 Score=65.90 Aligned_cols=69 Identities=20% Similarity=0.255 Sum_probs=42.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCC-eE
Q 043056 178 LGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEK-KI 256 (559)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k-r~ 256 (559)
|.|+|++|+||||+|+.+++.... ..+.++.+.-.+. ........+..+........ +.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~-----~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF-----PFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS-----EEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhccc-----ccccccccccccc---------------cccccccccccccccccccccce
Confidence 579999999999999999998752 2344443322100 11112223334444443343 89
Q ss_pred EEEEeCCCcc
Q 043056 257 LIILDNIWEN 266 (559)
Q Consensus 257 LlVlDdv~~~ 266 (559)
+|++||++..
T Consensus 61 vl~iDe~d~l 70 (132)
T PF00004_consen 61 VLFIDEIDKL 70 (132)
T ss_dssp EEEEETGGGT
T ss_pred eeeeccchhc
Confidence 9999999654
No 106
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.94 E-value=0.00036 Score=73.57 Aligned_cols=181 Identities=19% Similarity=0.156 Sum_probs=106.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCC
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEK 254 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 254 (559)
...+.|+|++|+|||+|++.+++....+..-..+++++.. ++...+...+... ....+.+.+. +
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~--------~~~~~~~~~~--~ 211 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN--------TMEEFKEKYR--S 211 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC--------cHHHHHHHHh--c
Confidence 3568999999999999999999987654222345666543 3334444443211 1233444444 3
Q ss_pred eEEEEEeCCCcccc---c-chhcCCCCC-CCCCcEEEEEecCcc--hh------ccCCCCCCeeecCCCCHHHHHHHHHH
Q 043056 255 KILIILDNIWENLD---L-RVVGIPHGD-GHKDCKVLLTARSLD--VL------SGKMDSRPNFSIGVLNEEEAWNLFKK 321 (559)
Q Consensus 255 r~LlVlDdv~~~~~---~-~~l~~~~~~-~~~gs~IivTTR~~~--va------~~~~~~~~~~~l~~L~~~ea~~Lf~~ 321 (559)
.-+|+|||++.... + +.+...+.. ...|..||+||.... +. .........+.+++.+.++-..++++
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHH
Confidence 45899999964311 1 122111110 112445788776532 10 11233446899999999999999999
Q ss_pred HhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHH------hcC--ChHHHHHHHHHh
Q 043056 322 MAGDYIEGSEFQSVARDVAKECAGLPVSVVTIARAL------RNK--RLFEWKDALEQL 372 (559)
Q Consensus 322 ~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L------~~~--~~~~w~~~l~~l 372 (559)
.+..... .--+++..-|++.+.|..-.+.-+-..| .++ +....+.++..+
T Consensus 292 ~~~~~~~-~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 292 KAEEEGI-DLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHcCC-CCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 8853211 1125678889999998865433332222 122 667777777765
No 107
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.90 E-value=0.00015 Score=82.23 Aligned_cols=159 Identities=13% Similarity=0.200 Sum_probs=92.0
Q ss_pred CCCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCC----CeEEE-EEeCCCcCHHHHHHH
Q 043056 151 KDYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLF----DQVVF-VEVSQNQDIRKLQGE 225 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~~~~w-v~~s~~~~~~~~~~~ 225 (559)
....+++||+.++++++..|.......+.++|++|+|||++|..+.........+ ...+| +.+ ..+.
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~------~~l~-- 241 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM------GALI-- 241 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH------HHHh--
Confidence 3456799999999999998876655667799999999999999999886432111 22233 221 1111
Q ss_pred HHHHhCCCCcCCChhhhHHHHHHHHHc-CCeEEEEEeCCCcccc---------cchhcCCCCCCCCCcEEEEEecCcchh
Q 043056 226 IADKLGLKFHEESESGRANSLFKRIKA-EKKILIILDNIWENLD---------LRVVGIPHGDGHKDCKVLLTARSLDVL 295 (559)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~---------~~~l~~~~~~~~~gs~IivTTR~~~va 295 (559)
. +... .......+..++..+.. +++.+|++|+++.... ...+..+... ....++|-+|.....-
T Consensus 242 --a--~~~~-~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~-~g~i~~IgaTt~~e~r 315 (852)
T TIGR03346 242 --A--GAKY-RGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA-RGELHCIGATTLDEYR 315 (852)
T ss_pred --h--cchh-hhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh-cCceEEEEeCcHHHHH
Confidence 0 0000 01112234445555532 4689999999974321 1122223222 1223455444433220
Q ss_pred ------ccCCCCCCeeecCCCCHHHHHHHHHHHh
Q 043056 296 ------SGKMDSRPNFSIGVLNEEEAWNLFKKMA 323 (559)
Q Consensus 296 ------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 323 (559)
.........+.++..+.++...++....
T Consensus 316 ~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 316 KYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 1112234578899999999999987664
No 108
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.87 E-value=0.00012 Score=82.63 Aligned_cols=159 Identities=13% Similarity=0.175 Sum_probs=90.7
Q ss_pred CCCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCC----C-eEEEEEeCCCcCHHHHHHH
Q 043056 151 KDYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLF----D-QVVFVEVSQNQDIRKLQGE 225 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~-~~~wv~~s~~~~~~~~~~~ 225 (559)
....+++||+.+++++++.|.......+.++|++|+|||++|..+.......... . .++++.++.-. .
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~------a- 247 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALV------A- 247 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhh------h-
Confidence 3456799999999999998876666677899999999999999999986432111 2 23333322210 0
Q ss_pred HHHHhCCCCcCCChhhhHHHHHHHHH-cCCeEEEEEeCCCccc---------ccchhcCCCCCCCCCcEEEEEecCcch-
Q 043056 226 IADKLGLKFHEESESGRANSLFKRIK-AEKKILIILDNIWENL---------DLRVVGIPHGDGHKDCKVLLTARSLDV- 294 (559)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~---------~~~~l~~~~~~~~~gs~IivTTR~~~v- 294 (559)
+.. ....-...+..+++.+. .+++.+|++|+++... +-..+..+.... ...++|-+|.....
T Consensus 248 -----g~~-~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~-g~l~~IgaTt~~e~r 320 (857)
T PRK10865 248 -----GAK-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-GELHCVGATTLDEYR 320 (857)
T ss_pred -----ccc-hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc-CCCeEEEcCCCHHHH
Confidence 000 00111123344444442 2568999999997542 112222332222 23455555543331
Q ss_pred -----hccCCCCCCeeecCCCCHHHHHHHHHHHh
Q 043056 295 -----LSGKMDSRPNFSIGVLNEEEAWNLFKKMA 323 (559)
Q Consensus 295 -----a~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 323 (559)
-.........+.+..-+.++...+++...
T Consensus 321 ~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 321 QYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 01111223356677668899988887654
No 109
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.87 E-value=6.8e-05 Score=64.93 Aligned_cols=90 Identities=26% Similarity=0.191 Sum_probs=51.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCe
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKK 255 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 255 (559)
..+.|+|++|+||||+++.++....... ..+++++.+........... ...................+.......+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 5789999999999999999999876542 23566655443322111111 11111111122222334444445443345
Q ss_pred EEEEEeCCCcccc
Q 043056 256 ILIILDNIWENLD 268 (559)
Q Consensus 256 ~LlVlDdv~~~~~ 268 (559)
.+|++|++.....
T Consensus 80 ~viiiDei~~~~~ 92 (148)
T smart00382 80 DVLILDEITSLLD 92 (148)
T ss_pred CEEEEECCcccCC
Confidence 9999999987644
No 110
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.87 E-value=0.00063 Score=72.57 Aligned_cols=178 Identities=15% Similarity=0.107 Sum_probs=102.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCe
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKK 255 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 255 (559)
..+.|+|..|+|||.|++.+++.......-..++|++. .++..++...+... ....+.+.+. +.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~--------~~~~f~~~y~--~~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG--------KGDSFRRRYR--EM 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc--------cHHHHHHHhh--cC
Confidence 35899999999999999999998764321234566653 34444444433211 1223333433 24
Q ss_pred EEEEEeCCCcc---cccch----hcCCCCCCCCCcEEEEEecCcc--h------hccCCCCCCeeecCCCCHHHHHHHHH
Q 043056 256 ILIILDNIWEN---LDLRV----VGIPHGDGHKDCKVLLTARSLD--V------LSGKMDSRPNFSIGVLNEEEAWNLFK 320 (559)
Q Consensus 256 ~LlVlDdv~~~---~~~~~----l~~~~~~~~~gs~IivTTR~~~--v------a~~~~~~~~~~~l~~L~~~ea~~Lf~ 320 (559)
=+|+|||+... ..|.. +...+. ..|..|||||.... . +...+...-++.|++.+.+.-..++.
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~--e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLH--NANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHH--hcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 58999999654 22221 111221 22456888887531 1 11223455689999999999999999
Q ss_pred HHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHh------cC--ChHHHHHHHHHh
Q 043056 321 KMAGDYIEGSEFQSVARDVAKECAGLPVSVVTIARALR------NK--RLFEWKDALEQL 372 (559)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~------~~--~~~~w~~~l~~l 372 (559)
+++...... --.+++.-|++.+.+..-.+.-+..-|. ++ +...-+.+++.+
T Consensus 457 kka~~r~l~-l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~itl~la~~vL~~~ 515 (617)
T PRK14086 457 KKAVQEQLN-APPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDL 515 (617)
T ss_pred HHHHhcCCC-CCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 887633211 1156777788887766543333322221 22 555556666654
No 111
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.85 E-value=0.00012 Score=71.80 Aligned_cols=164 Identities=17% Similarity=0.183 Sum_probs=104.4
Q ss_pred CCccchHHHHHHHHHHcCCCC---ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHh
Q 043056 154 LPFESRMFTLRNILSALEDPD---VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKL 230 (559)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~~~~---~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 230 (559)
..|.+|+.++..+...+.+.. +..|.|+|.+|+|||.+.+++.+.... ..+|+++-..++...++..|+.+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHh
Confidence 347789999999998887432 345589999999999999999998743 258999999999999999999998
Q ss_pred CCCC-cCCCh---hhhHHHHHHHHH-------cCCeEEEEEeCCCcccccchhcCC----C--CCCCCCcEEEEEecCc-
Q 043056 231 GLKF-HEESE---SGRANSLFKRIK-------AEKKILIILDNIWENLDLRVVGIP----H--GDGHKDCKVLLTARSL- 292 (559)
Q Consensus 231 ~~~~-~~~~~---~~~~~~l~~~l~-------~~kr~LlVlDdv~~~~~~~~l~~~----~--~~~~~gs~IivTTR~~- 292 (559)
+... ++... .+........+. .++.++||||+++...+.+.+..+ + .-..+ .-+|+++--.
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~-~i~iils~~~~ 159 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEP-TIVIILSAPSC 159 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCC-ceEEEEecccc
Confidence 6222 21111 122222222222 146899999999876655443111 0 01122 2344444322
Q ss_pred -chhccCCCC--CCeeecCCCCHHHHHHHHHHHh
Q 043056 293 -DVLSGKMDS--RPNFSIGVLNEEEAWNLFKKMA 323 (559)
Q Consensus 293 -~va~~~~~~--~~~~~l~~L~~~ea~~Lf~~~~ 323 (559)
......++. ..++....-+.+|...++.+.-
T Consensus 160 e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 160 EKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred HHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 211111233 3466678888999988887643
No 112
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.84 E-value=0.00027 Score=73.92 Aligned_cols=182 Identities=16% Similarity=0.143 Sum_probs=105.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCC
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEK 254 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 254 (559)
...+.|+|++|+|||+|++.+++.......-..++|++. .++..++...+... ....+.+.+. .+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~--------~~~~f~~~~~-~~ 194 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG--------KLNEFREKYR-KK 194 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc--------cHHHHHHHHH-hc
Confidence 345999999999999999999998765422234677754 34555555554321 1123333333 23
Q ss_pred eEEEEEeCCCccc---cc-chhcCCCCC-CCCCcEEEEEecC-cchh-------ccCCCCCCeeecCCCCHHHHHHHHHH
Q 043056 255 KILIILDNIWENL---DL-RVVGIPHGD-GHKDCKVLLTARS-LDVL-------SGKMDSRPNFSIGVLNEEEAWNLFKK 321 (559)
Q Consensus 255 r~LlVlDdv~~~~---~~-~~l~~~~~~-~~~gs~IivTTR~-~~va-------~~~~~~~~~~~l~~L~~~ea~~Lf~~ 321 (559)
.-+|++||++... .+ ..+...+.. ...|..||+||.. ..-. .........+.+++.+.+.-..++++
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHH
Confidence 5689999997431 11 112111110 1124468888753 2111 11123345889999999999999998
Q ss_pred HhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHH------hcC--ChHHHHHHHHHh
Q 043056 322 MAGDYIEGSEFQSVARDVAKECAGLPVSVVTIARAL------RNK--RLFEWKDALEQL 372 (559)
Q Consensus 322 ~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L------~~~--~~~~w~~~l~~l 372 (559)
.+...... --.++..-|++.+.|..-.+.-+-.-| .++ +...-+.++..+
T Consensus 275 ~~~~~~~~-l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 275 MLEIEHGE-LPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred HHHhcCCC-CCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 87532111 125678888888888654333332222 122 666666666654
No 113
>PRK06620 hypothetical protein; Validated
Probab=97.83 E-value=8e-05 Score=69.87 Aligned_cols=135 Identities=16% Similarity=0.024 Sum_probs=79.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCe
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKK 255 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 255 (559)
+.+.|+|++|+|||+|++.+++.... .++. .... . . +.+ ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~--~~~~-------------------~-----~---~~~--~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIK--DIFF-------------------N-----E---EIL--EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-------EEcc--hhhh-------------------c-----h---hHH--hcC
Confidence 56899999999999999987765431 1211 0000 0 0 011 123
Q ss_pred EEEEEeCCCcccc--cchhcCCCCCCCCCcEEEEEecCcchh------ccCCCCCCeeecCCCCHHHHHHHHHHHhCCCC
Q 043056 256 ILIILDNIWENLD--LRVVGIPHGDGHKDCKVLLTARSLDVL------SGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYI 327 (559)
Q Consensus 256 ~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~IivTTR~~~va------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~ 327 (559)
-+|++||++...+ +-.+...+ ...|..+|+|++..... ........++.++++++++-..++++.+....
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~--~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNII--NEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHH--HhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 5788999973321 11111111 13466899998754431 11123345899999999998888888765221
Q ss_pred CCcchHHHHHHHHHHhCCChHHHH
Q 043056 328 EGSEFQSVARDVAKECAGLPVSVV 351 (559)
Q Consensus 328 ~~~~~~~~~~~I~~~c~GlPLai~ 351 (559)
- .--+++.+-|++.+.|.--.+.
T Consensus 165 l-~l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 165 V-TISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred C-CCCHHHHHHHHHHccCCHHHHH
Confidence 1 1115677788888877654443
No 114
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.83 E-value=4.9e-05 Score=83.94 Aligned_cols=158 Identities=19% Similarity=0.198 Sum_probs=92.3
Q ss_pred CCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccC-CC---CeEEEEEeCCCcCHHHHHHHHHH
Q 043056 153 YLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDK-LF---DQVVFVEVSQNQDIRKLQGEIAD 228 (559)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f---~~~~wv~~s~~~~~~~~~~~i~~ 228 (559)
..+++||+++++++++.|......-+.++|++|+|||++|+.++....... .| ++.+|.. +...+ +.
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la 255 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA 255 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc
Confidence 467999999999999988755445567899999999999999998753322 11 3444421 11111 10
Q ss_pred HhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcc--------c--ccchhcCCCCCCCCCcEEEEEecCcchh---
Q 043056 229 KLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWEN--------L--DLRVVGIPHGDGHKDCKVLLTARSLDVL--- 295 (559)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--------~--~~~~l~~~~~~~~~gs~IivTTR~~~va--- 295 (559)
+.. ...........+...+...++.+|++|+++.. . +...+..++.. ...-+||-+|......
T Consensus 256 --G~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-~g~i~vIgATt~~E~~~~~ 331 (758)
T PRK11034 256 --GTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNIF 331 (758)
T ss_pred --ccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-CCCeEEEecCChHHHHHHh
Confidence 100 01111223444555555456789999999643 1 11112223222 2234555555433210
Q ss_pred ---ccCCCCCCeeecCCCCHHHHHHHHHHHh
Q 043056 296 ---SGKMDSRPNFSIGVLNEEEAWNLFKKMA 323 (559)
Q Consensus 296 ---~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 323 (559)
.........+.+++.+.++...++....
T Consensus 332 ~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 332 EKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 0011234589999999999999998654
No 115
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.82 E-value=0.00069 Score=63.49 Aligned_cols=53 Identities=13% Similarity=0.156 Sum_probs=40.4
Q ss_pred cCCCCCccchHHHHHHHHHH----cCCCCceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 043056 150 NKDYLPFESRMFTLRNILSA----LEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSD 202 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~----L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (559)
+.....++|-+.+.+.|++- +......-+.+||..|+|||++++.+.+....+
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 34455688888887777654 334455678899999999999999999987765
No 116
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.79 E-value=0.0003 Score=75.03 Aligned_cols=173 Identities=17% Similarity=0.204 Sum_probs=93.9
Q ss_pred CCCccchHHHHHH---HHHHcCC---------CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHH
Q 043056 153 YLPFESRMFTLRN---ILSALED---------PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIR 220 (559)
Q Consensus 153 ~~~~~gR~~~~~~---l~~~L~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 220 (559)
...+.|-+...++ ++.++.. ..++-+.++|++|+|||+||+.+++..... ++.++. .
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-------~~~i~~----~ 122 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP-------FFSISG----S 122 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC-------eeeccH----H
Confidence 4456676555444 3443321 234568899999999999999999875432 222221 1
Q ss_pred HHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc------------cc----chhcCCCC--CCCCC
Q 043056 221 KLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL------------DL----RVVGIPHG--DGHKD 282 (559)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~------------~~----~~l~~~~~--~~~~g 282 (559)
++.... .+ .....+..+++......+.+|+|||++... .+ ..+...+. ....+
T Consensus 123 ~~~~~~---~g------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 123 DFVEMF---VG------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred HHHHHH---hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 111110 01 011233444444444568999999996431 01 11111111 12334
Q ss_pred cEEEEEecCcchhc-cCC---CCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 043056 283 CKVLLTARSLDVLS-GKM---DSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLP 347 (559)
Q Consensus 283 s~IivTTR~~~va~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (559)
..||.||....... ... .-...+.++..+.++-.++|+.++......++ .....+++.+.|..
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~--~~l~~la~~t~G~s 260 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD--VDLKAVARRTPGFS 260 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc--hhHHHHHHhCCCCC
Confidence 55666776543221 111 23458889999999999999888754322221 12457888888743
No 117
>CHL00176 ftsH cell division protein; Validated
Probab=97.79 E-value=0.00031 Score=76.30 Aligned_cols=171 Identities=19% Similarity=0.283 Sum_probs=95.7
Q ss_pred CCccchHH---HHHHHHHHcCCC---------CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHH
Q 043056 154 LPFESRMF---TLRNILSALEDP---------DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRK 221 (559)
Q Consensus 154 ~~~~gR~~---~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 221 (559)
..+.|.++ ++.++++.+..+ ..+-+.++|++|+|||+||+.++...... |+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-------~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-------FFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------eeeccHH----H
Confidence 34555544 445555555422 24568999999999999999998875432 2222211 1
Q ss_pred HHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc------------c----cchhcCCCC--CCCCCc
Q 043056 222 LQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL------------D----LRVVGIPHG--DGHKDC 283 (559)
Q Consensus 222 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~------------~----~~~l~~~~~--~~~~gs 283 (559)
+.... .+ ........+........+++|+|||++... . +..+...+. ....+.
T Consensus 252 f~~~~---~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 FVEMF---VG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HHHHh---hh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 11000 00 011233444555555778999999996431 1 122222211 123455
Q ss_pred EEEEEecCcchhc-cCC---CCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCC
Q 043056 284 KVLLTARSLDVLS-GKM---DSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGL 346 (559)
Q Consensus 284 ~IivTTR~~~va~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl 346 (559)
.||.||....... ... .-...+.++..+.++-.++++.++......+ ......+++.+.|.
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G~ 387 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPGF 387 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCCC
Confidence 6777776543321 111 1236888999999999999998876422222 23356788888873
No 118
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.78 E-value=0.0011 Score=69.21 Aligned_cols=153 Identities=8% Similarity=0.079 Sum_probs=88.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCe
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKK 255 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 255 (559)
..+.|+|+.|+|||+|++.+++..... ...+++++ ...+...+...+... ....+...+ ...
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~------~~~f~~~~~~~l~~~--------~~~~f~~~~--~~~ 203 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVR------SELFTEHLVSAIRSG--------EMQRFRQFY--RNV 203 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEee------HHHHHHHHHHHHhcc--------hHHHHHHHc--ccC
Confidence 468899999999999999999987643 23355654 233444555444311 112233222 234
Q ss_pred EEEEEeCCCcccc--c--chhcCCCCC-CCCCcEEEEEecCcc-hh-------ccCCCCCCeeecCCCCHHHHHHHHHHH
Q 043056 256 ILIILDNIWENLD--L--RVVGIPHGD-GHKDCKVLLTARSLD-VL-------SGKMDSRPNFSIGVLNEEEAWNLFKKM 322 (559)
Q Consensus 256 ~LlVlDdv~~~~~--~--~~l~~~~~~-~~~gs~IivTTR~~~-va-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 322 (559)
-+|++||+..... + +.+...+.. ...|..||+||.... .. .........+.+.+++.++-..++.+.
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 5899999965422 1 112111110 113456888885421 10 112233468899999999999999988
Q ss_pred hCCCCCCcchHHHHHHHHHHhCCCh
Q 043056 323 AGDYIEGSEFQSVARDVAKECAGLP 347 (559)
Q Consensus 323 ~~~~~~~~~~~~~~~~I~~~c~GlP 347 (559)
+..... .--.++..-|+..+.|.-
T Consensus 284 ~~~~~~-~l~~evl~~la~~~~~di 307 (445)
T PRK12422 284 AEALSI-RIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHcCC-CCCHHHHHHHHHhcCCCH
Confidence 753211 111456666777777553
No 119
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.78 E-value=0.00019 Score=74.20 Aligned_cols=175 Identities=18% Similarity=0.232 Sum_probs=97.4
Q ss_pred CCCCccchHHHHHHHHHHcC----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcC
Q 043056 152 DYLPFESRMFTLRNILSALE----D---------PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQD 218 (559)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 218 (559)
.+..+.|.+..+++|.+.+. . ...+-+.++|++|+|||++|+.+++..... | +.+...
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~--f-----i~V~~s-- 251 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT--F-----LRVVGS-- 251 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC--E-----EEEecc--
Confidence 34456778887777766553 1 234578899999999999999999976532 3 222111
Q ss_pred HHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcccc----------------cchhcCCCC--CCC
Q 043056 219 IRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENLD----------------LRVVGIPHG--DGH 280 (559)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~----------------~~~l~~~~~--~~~ 280 (559)
++.... ++ ........++.....+.+.+|+||+++.... +..+...+. ...
T Consensus 252 --eL~~k~---~G------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 252 --ELIQKY---LG------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred --hhhhhh---cc------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 111110 00 0112233344444446789999999753210 011111111 123
Q ss_pred CCcEEEEEecCcchhcc-CC---CCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH
Q 043056 281 KDCKVLLTARSLDVLSG-KM---DSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPV 348 (559)
Q Consensus 281 ~gs~IivTTR~~~va~~-~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 348 (559)
.+.+||.||........ .. .....+.+.+.+.++..++|..+........+. ....++..+.|+--
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dv--dl~~la~~t~g~sg 390 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDV--DLEEFIMAKDELSG 390 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCc--CHHHHHHhcCCCCH
Confidence 35678888876544321 11 224588999999999999999877532222111 13456666666543
No 120
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.0009 Score=65.39 Aligned_cols=183 Identities=18% Similarity=0.234 Sum_probs=107.9
Q ss_pred CCCCccchHHHHHHHHHHcC-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcC
Q 043056 152 DYLPFESRMFTLRNILSALE-------------DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQD 218 (559)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 218 (559)
.+..+-|-++.+++|.+.+. =..++=|.+|||+|.|||-||+.|+++.... |+.+...
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-------FIrvvgS-- 219 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-------FIRVVGS-- 219 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-------EEEeccH--
Confidence 34556678888888877664 1356778899999999999999999976643 3433322
Q ss_pred HHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc----------------ccchhcCCCCC--CC
Q 043056 219 IRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL----------------DLRVVGIPHGD--GH 280 (559)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~----------------~~~~l~~~~~~--~~ 280 (559)
++.+.. +| .....+..+++--..+.++.|++|.++... ..-++...+.. ..
T Consensus 220 --ElVqKY---iG------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 220 --ELVQKY---IG------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred --HHHHHH---hc------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 222211 11 112344555555566789999999986431 11223223222 23
Q ss_pred CCcEEEEEecCcchh-ccCCC---CCCeeecCCCCHHHHHHHHHHHhCC--CCCCcchHHHHHHHHHHhCCCh----HHH
Q 043056 281 KDCKVLLTARSLDVL-SGKMD---SRPNFSIGVLNEEEAWNLFKKMAGD--YIEGSEFQSVARDVAKECAGLP----VSV 350 (559)
Q Consensus 281 ~gs~IivTTR~~~va-~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~~~--~~~~~~~~~~~~~I~~~c~GlP----Lai 350 (559)
...|||..|...+++ ...+. -.+.+++..=+.+.=.++|+-+... ....-+ .+.+++.|.|.- -|+
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sGAdlkai 364 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSGADLKAI 364 (406)
T ss_pred CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCchHHHHHH
Confidence 456899888776654 11222 2356777755555556677766652 222333 345677777765 345
Q ss_pred HHHHHHHh
Q 043056 351 VTIARALR 358 (559)
Q Consensus 351 ~~~~~~L~ 358 (559)
.+=|++++
T Consensus 365 ctEAGm~A 372 (406)
T COG1222 365 CTEAGMFA 372 (406)
T ss_pred HHHHhHHH
Confidence 55566654
No 121
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.74 E-value=0.001 Score=65.95 Aligned_cols=172 Identities=15% Similarity=0.142 Sum_probs=98.8
Q ss_pred HHHHHHHHcCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhcccC-----------------CCCeEEEEEeCCCcCHHHHH
Q 043056 162 TLRNILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKVKSDK-----------------LFDQVVFVEVSQNQDIRKLQ 223 (559)
Q Consensus 162 ~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~-----------------~f~~~~wv~~s~~~~~~~~~ 223 (559)
..+.+...+..++. ..+.++|+.|+||+++|..++...--.+ |.| ..|+.......
T Consensus 12 ~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~~----- 85 (319)
T PRK08769 12 AYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNRT----- 85 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCcc-----
Confidence 45566666665554 4688999999999999999888653221 111 11221000000
Q ss_pred HHHHHHhCCCCcCCChhhhHHHHHHHHH----cCCeEEEEEeCCCccc--ccchhcCCCCCCCCCcEEEEEecC-cchhc
Q 043056 224 GEIADKLGLKFHEESESGRANSLFKRIK----AEKKILIILDNIWENL--DLRVVGIPHGDGHKDCKVLLTARS-LDVLS 296 (559)
Q Consensus 224 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~-~~va~ 296 (559)
+......-..+.+..+.+.+. .+++-++|+|+++... .-+.+...+-.-..++.+|++|.+ ..+..
T Consensus 86 -------~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLp 158 (319)
T PRK08769 86 -------GDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPA 158 (319)
T ss_pred -------cccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCch
Confidence 000000011233334444332 2566799999997553 333344444333456667776665 44443
Q ss_pred cCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 043056 297 GKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTI 353 (559)
Q Consensus 297 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 353 (559)
........+.+.+++.+++.+.+... + .+ ...+..++..++|.|+....+
T Consensus 159 TIrSRCq~i~~~~~~~~~~~~~L~~~-~--~~----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 159 TIRSRCQRLEFKLPPAHEALAWLLAQ-G--VS----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred HHHhhheEeeCCCcCHHHHHHHHHHc-C--CC----hHHHHHHHHHcCCCHHHHHHH
Confidence 34455678999999999999888753 1 11 223667899999999866443
No 122
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.74 E-value=0.00012 Score=78.87 Aligned_cols=201 Identities=10% Similarity=0.086 Sum_probs=103.7
Q ss_pred cCCCCCccchHHHHHHHHHHcCC-----CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCC---CcCHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALED-----PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQ---NQDIRK 221 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~---~~~~~~ 221 (559)
|.....++|.++.++.+..|+.. ...+++.|+|++|+||||+++.++.... ++..-|++... ..+...
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~----~~~~Ew~npv~~~~~~~~~~ 155 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG----IQVQEWSNPTLPDFQKNDHK 155 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh----hHHHHHhhhhhhcccccccc
Confidence 45566788999999998888863 2335799999999999999999998754 22223322110 000000
Q ss_pred HHHHHHHHhCCCCcCCChhhhHHHHHHHH----------HcCCeEEEEEeCCCccc-----ccchhcC-CCCCCCCCcEE
Q 043056 222 LQGEIADKLGLKFHEESESGRANSLFKRI----------KAEKKILIILDNIWENL-----DLRVVGI-PHGDGHKDCKV 285 (559)
Q Consensus 222 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----------~~~kr~LlVlDdv~~~~-----~~~~l~~-~~~~~~~gs~I 285 (559)
+...+.+++... .+..+....+.... ..+++.+|+||++.... .+..+.. .....+.-.-|
T Consensus 156 ~~~s~~~~~~~~---~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI 232 (637)
T TIGR00602 156 VTLSLESCFSNF---QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLV 232 (637)
T ss_pred cchhhhhccccc---cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEE
Confidence 111111111111 01111111111111 12467899999994321 2333333 22222222345
Q ss_pred EEEecCcc---------hh------ccC--CCCCCeeecCCCCHHHHHHHHHHHhCCCCC---Cc-c--hHHHHHHHHHH
Q 043056 286 LLTARSLD---------VL------SGK--MDSRPNFSIGVLNEEEAWNLFKKMAGDYIE---GS-E--FQSVARDVAKE 342 (559)
Q Consensus 286 ivTTR~~~---------va------~~~--~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~---~~-~--~~~~~~~I~~~ 342 (559)
++||.+.. .. ... ......+.+.|++.....+.+.+.+..... .. . -.+....|+..
T Consensus 233 ~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~ 312 (637)
T TIGR00602 233 FIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQG 312 (637)
T ss_pred EEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHh
Confidence 55553211 00 000 113346899999999987777776642110 11 0 13567778888
Q ss_pred hCCChHHHHHHHHHH
Q 043056 343 CAGLPVSVVTIARAL 357 (559)
Q Consensus 343 c~GlPLai~~~~~~L 357 (559)
++|---.+.....++
T Consensus 313 s~GDiRsAIn~LQf~ 327 (637)
T TIGR00602 313 CSGDIRSAINSLQFS 327 (637)
T ss_pred CCChHHHHHHHHHHH
Confidence 888764433333443
No 123
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.71 E-value=0.00037 Score=63.78 Aligned_cols=101 Identities=19% Similarity=0.141 Sum_probs=69.5
Q ss_pred CCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhC
Q 043056 152 DYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLG 231 (559)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 231 (559)
....++|.++.++.+--...+++.+-+.|.||+|+||||-+..+++..-....=+.+.-++.|....+.-+-..|-.-.
T Consensus 25 ~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FA- 103 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFA- 103 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHH-
Confidence 3456889999988887777788889999999999999999999998876544445566666676665544433332111
Q ss_pred CCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcc
Q 043056 232 LKFHEESESGRANSLFKRIKAEKKILIILDNIWEN 266 (559)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 266 (559)
+-.-.+-.++.-.+|||..++.
T Consensus 104 -------------Q~kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 104 -------------QKKVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred -------------HhhccCCCCceeEEEeeccchh
Confidence 0001111356678899999875
No 124
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.68 E-value=0.0011 Score=66.70 Aligned_cols=146 Identities=10% Similarity=0.064 Sum_probs=87.5
Q ss_pred ccc-hHHHHHHHHHHcCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhcccC--------------------CCCeEEEEEe
Q 043056 156 FES-RMFTLRNILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKVKSDK--------------------LFDQVVFVEV 213 (559)
Q Consensus 156 ~~g-R~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~~ 213 (559)
++| .+..++.|...+..++. ....++|+.|+||||+|..+.+..--.+ |.|..+...-
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~ 86 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPD 86 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccc
Confidence 445 55667777777765554 4668999999999999999988753221 2222111110
Q ss_pred CCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHH----cCCeEEEEEeCCCccc--ccchhcCCCCCCCCCcEEEE
Q 043056 214 SQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIK----AEKKILIILDNIWENL--DLRVVGIPHGDGHKDCKVLL 287 (559)
Q Consensus 214 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~Iiv 287 (559)
+... ..+.+..+.+.+. .+++=++|+|+++... ..+.+...+.....++.+|+
T Consensus 87 ~~~i---------------------~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il 145 (329)
T PRK08058 87 GQSI---------------------KKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAIL 145 (329)
T ss_pred cccC---------------------CHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEE
Confidence 1111 1222333333332 2455678999986542 34445555544455677777
Q ss_pred EecCc-chhccCCCCCCeeecCCCCHHHHHHHHHHH
Q 043056 288 TARSL-DVLSGKMDSRPNFSIGVLNEEEAWNLFKKM 322 (559)
Q Consensus 288 TTR~~-~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 322 (559)
+|.+. .+..........+++.+++.++..+.+...
T Consensus 146 ~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 146 LTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred EeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 77653 333333455679999999999998888753
No 125
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.67 E-value=0.0021 Score=63.99 Aligned_cols=175 Identities=10% Similarity=0.038 Sum_probs=99.4
Q ss_pred HHHHHHHcCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCC-----C--
Q 043056 163 LRNILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLK-----F-- 234 (559)
Q Consensus 163 ~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~-----~-- 234 (559)
.+.|...+..++ ...+.++|+.|+||+++|..++...--.+.... ..++.-...+.+...-..+ .
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~p~~ 83 (325)
T PRK06871 11 YQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD-------QPCGQCHSCHLFQAGNHPDFHILEPID 83 (325)
T ss_pred HHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEcccc
Confidence 455666665544 457779999999999999999987542211100 0000000111111100000 0
Q ss_pred cCCChhhhHHHHHHHHH----cCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEEEecCc-chhccCCCCCCeeec
Q 043056 235 HEESESGRANSLFKRIK----AEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLLTARSL-DVLSGKMDSRPNFSI 307 (559)
Q Consensus 235 ~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~-~va~~~~~~~~~~~l 307 (559)
...-..+.+..+.+.+. .+++=++|+|+++.. ...+.+...+-...+++.+|++|.+. .+..........+.+
T Consensus 84 ~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~ 163 (325)
T PRK06871 84 NKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLI 163 (325)
T ss_pred CCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeC
Confidence 00012333444444442 256668889999765 34555555555545567777777654 444333445679999
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHH
Q 043056 308 GVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSV 350 (559)
Q Consensus 308 ~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 350 (559)
.+++.+++.+.+...... + ...+...+..++|.|+..
T Consensus 164 ~~~~~~~~~~~L~~~~~~----~--~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 164 HPPEEQQALDWLQAQSSA----E--ISEILTALRINYGRPLLA 200 (325)
T ss_pred CCCCHHHHHHHHHHHhcc----C--hHHHHHHHHHcCCCHHHH
Confidence 999999999988876421 1 113566788999999633
No 126
>PRK10536 hypothetical protein; Provisional
Probab=97.65 E-value=0.00061 Score=64.61 Aligned_cols=58 Identities=24% Similarity=0.315 Sum_probs=42.9
Q ss_pred CCCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEE
Q 043056 151 KDYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVF 210 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~w 210 (559)
.+..++.++......++.++.+. .++.+.|++|+|||+||..+..+.-..+.|+.++.
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred cCCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 34556778888888888888654 48999999999999999999886432233554443
No 127
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.64 E-value=0.0031 Score=71.03 Aligned_cols=157 Identities=24% Similarity=0.245 Sum_probs=82.6
Q ss_pred CccchHHHHHHHHHHcC------CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHH
Q 043056 155 PFESRMFTLRNILSALE------DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIAD 228 (559)
Q Consensus 155 ~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (559)
.++|.+...+.+.+++. ..+.+++.++|++|+|||++|+.+++..... | +-++++...+..++...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~--~---~~i~~~~~~~~~~i~g~--- 392 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRK--F---VRFSLGGVRDEAEIRGH--- 392 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC--e---EEEeCCCcccHHHHcCC---
Confidence 46787888888777553 2234589999999999999999999987532 3 22233333333222110
Q ss_pred HhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcccc---------cchhcC-----CCCCC-------CCCcEEEE
Q 043056 229 KLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENLD---------LRVVGI-----PHGDG-------HKDCKVLL 287 (559)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~---------~~~l~~-----~~~~~-------~~gs~Iiv 287 (559)
.....+.. ...+........ .++-+++||+++.... +-.+.. .|.+. ..+..+|.
T Consensus 393 --~~~~~g~~-~g~i~~~l~~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~ 468 (775)
T TIGR00763 393 --RRTYVGAM-PGRIIQGLKKAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIA 468 (775)
T ss_pred --CCceeCCC-CchHHHHHHHhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEE
Confidence 00001111 111112222212 2334789999865421 111111 11111 12334455
Q ss_pred EecCcc-hhccCCCCCCeeecCCCCHHHHHHHHHHHh
Q 043056 288 TARSLD-VLSGKMDSRPNFSIGVLNEEEAWNLFKKMA 323 (559)
Q Consensus 288 TTR~~~-va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 323 (559)
||.... +..........+.+.+++.++-.++++.+.
T Consensus 469 TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 469 TANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred ecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 554432 222223444689999999999988887654
No 128
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.0054 Score=60.85 Aligned_cols=164 Identities=13% Similarity=0.122 Sum_probs=98.1
Q ss_pred HHHHHHHHcCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhcccC-------------------CCCeEEEEEeCCCcCHHH
Q 043056 162 TLRNILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKVKSDK-------------------LFDQVVFVEVSQNQDIRK 221 (559)
Q Consensus 162 ~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv~~s~~~~~~~ 221 (559)
..+++...+..++ ...+.++|+.|+||+++|..+....--.+ |.|.. |+.-...
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~-~i~p~~~----- 84 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLH-VIKPEKE----- 84 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEE-EEecCcC-----
Confidence 3455666555444 45788999999999999999988653221 22211 1111000
Q ss_pred HHHHHHHHhCCCCcCCChhhhHHHHHHHHH----cCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEEEecC-cch
Q 043056 222 LQGEIADKLGLKFHEESESGRANSLFKRIK----AEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLLTARS-LDV 294 (559)
Q Consensus 222 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~-~~v 294 (559)
...-..+.+..+.+.+. .+++=++|+|+++.. ...+.+...+..-.+++.+|++|.+ ..+
T Consensus 85 -------------~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~l 151 (319)
T PRK06090 85 -------------GKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRL 151 (319)
T ss_pred -------------CCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhC
Confidence 00011223333333332 245568889999755 3455555555444556666666655 445
Q ss_pred hccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 043056 295 LSGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTI 353 (559)
Q Consensus 295 a~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 353 (559)
..........+.+.+++.+++.+.+.... .. .+..++..++|.|+....+
T Consensus 152 LpTI~SRCq~~~~~~~~~~~~~~~L~~~~---~~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 152 LPTIVSRCQQWVVTPPSTAQAMQWLKGQG---IT------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hHHHHhcceeEeCCCCCHHHHHHHHHHcC---Cc------hHHHHHHHcCCCHHHHHHH
Confidence 44445556799999999999999887642 11 1356789999999866544
No 129
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.0022 Score=69.49 Aligned_cols=177 Identities=18% Similarity=0.169 Sum_probs=110.9
Q ss_pred CCccchH---HHHHHHHHHcCCC---------CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHH
Q 043056 154 LPFESRM---FTLRNILSALEDP---------DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRK 221 (559)
Q Consensus 154 ~~~~gR~---~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 221 (559)
.++.|-+ .|++++++.|.++ -++=+.++||+|+|||-||+.++-...+- |++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechH-----
Confidence 3455544 4666777777643 25678899999999999999999877653 4455432
Q ss_pred HHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc-----------------ccchhcCCCCCC--CCC
Q 043056 222 LQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL-----------------DLRVVGIPHGDG--HKD 282 (559)
Q Consensus 222 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~-----------------~~~~l~~~~~~~--~~g 282 (559)
+..+.+... ....+..+....+...++++.+|+++... .++++....... ..+
T Consensus 379 ---EFvE~~~g~-----~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 379 ---EFVEMFVGV-----GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred ---HHHHHhccc-----chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 222222111 12345566666666789999999885431 122332222211 233
Q ss_pred cEEEEEecCcchhccC-C---CCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHH
Q 043056 283 CKVLLTARSLDVLSGK-M---DSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVV 351 (559)
Q Consensus 283 s~IivTTR~~~va~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 351 (559)
.-++-+|+..++.+.. + .-...+.++.=+...-.++|.-++.......+..++.+ |+....|.+=|..
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gadl 522 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGADL 522 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHHH
Confidence 4455567666665221 1 22457888888888899999988875554455567777 9999999886643
No 130
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.55 E-value=0.0021 Score=62.53 Aligned_cols=56 Identities=27% Similarity=0.279 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHH
Q 043056 161 FTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQ 223 (559)
Q Consensus 161 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 223 (559)
..++++..++..+ .-|.+.|++|+|||+||+.++..... ..+.++.....+..+++
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg~-----~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRDR-----PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhCC-----CEEEEeCCccCCHHHHh
Confidence 3455666666544 35679999999999999999975421 24555666555555443
No 131
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.55 E-value=0.00035 Score=72.98 Aligned_cols=190 Identities=13% Similarity=0.134 Sum_probs=115.2
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIAD 228 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (559)
|..+..++|-+.....|...+..++ ..-....|+-|+||||+|+.++....-.+.- ....++.-...+.|..
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~-------~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGP-------TAEPCGKCISCKEINE 84 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCC-------CCCcchhhhhhHhhhc
Confidence 4445668999988888888887544 3456688999999999999999875432210 0011111111122221
Q ss_pred HhCC-----CCcCCChhhhHHHHHHHHH----cCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEE-EecCcchhc
Q 043056 229 KLGL-----KFHEESESGRANSLFKRIK----AEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLL-TARSLDVLS 296 (559)
Q Consensus 229 ~l~~-----~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iiv-TTR~~~va~ 296 (559)
.-.. +.......+....+.+... .+|.=+.|+|+|+.. ..|..+...+-........|+ ||-...+..
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 1000 1111123345555655553 355568999999754 568877777655555665555 555556655
Q ss_pred cCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 043056 297 GKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLP 347 (559)
Q Consensus 297 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (559)
........|.++.++.++-...+...+....-.-+ .+...-|++..+|..
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e-~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE-EDALSLIARAAEGSL 214 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHhcCCccC-HHHHHHHHHHcCCCh
Confidence 55667789999999999999888888753322221 334555666666643
No 132
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.52 E-value=0.0031 Score=70.44 Aligned_cols=158 Identities=18% Similarity=0.204 Sum_probs=89.2
Q ss_pred CCccchHHHHHHHHHHcC------CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHH
Q 043056 154 LPFESRMFTLRNILSALE------DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIA 227 (559)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 227 (559)
...+|.++..+.|++++. .....++.++|++|+||||+++.++...... | +-++++...+..++...-.
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~--~---~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK--Y---VRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCC--E---EEEEcCCCCCHHHhccchh
Confidence 457888999999988775 2344689999999999999999999876532 3 2234444434332211110
Q ss_pred HHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcccc------cchhcCCCCC---------------CCCCcEEE
Q 043056 228 DKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENLD------LRVVGIPHGD---------------GHKDCKVL 286 (559)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~------~~~l~~~~~~---------------~~~gs~Ii 286 (559)
...+ .........+ .... ...-+++||.++.... ...+...+.. .-.+.-+|
T Consensus 397 ~~~g-----~~~G~~~~~l-~~~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 397 TYIG-----SMPGKLIQKM-AKVG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred ccCC-----CCCcHHHHHH-HhcC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 0010 0111111112 1111 1334788999964321 1111111110 11344456
Q ss_pred EEecCcchhccCCCCCCeeecCCCCHHHHHHHHHHHh
Q 043056 287 LTARSLDVLSGKMDSRPNFSIGVLNEEEAWNLFKKMA 323 (559)
Q Consensus 287 vTTR~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 323 (559)
.||....+.....+....+.+.+++.++-.++.+++.
T Consensus 470 ~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 470 ATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 6665554443344556789999999999999888776
No 133
>PRK08118 topology modulation protein; Reviewed
Probab=97.50 E-value=7.1e-05 Score=67.35 Aligned_cols=35 Identities=26% Similarity=0.499 Sum_probs=28.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccc-CCCCeEEE
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSD-KLFDQVVF 210 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~w 210 (559)
+.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999987654 35677776
No 134
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.49 E-value=0.0013 Score=69.19 Aligned_cols=154 Identities=18% Similarity=0.202 Sum_probs=83.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcC
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAE 253 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (559)
.++-|.++|++|+|||.+|+.+++..... | +-++.+. +.. ...+. ....+..+.+.....
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~--~---~~l~~~~------l~~--------~~vGe-se~~l~~~f~~A~~~ 317 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLP--L---LRLDVGK------LFG--------GIVGE-SESRMRQMIRIAEAL 317 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEEhHH------hcc--------cccCh-HHHHHHHHHHHHHhc
Confidence 45678999999999999999999976532 2 2222211 100 01111 112233444444446
Q ss_pred CeEEEEEeCCCcccc--------------cchhcCCCCCCCCCcEEEEEecCcchhc-cCC---CCCCeeecCCCCHHHH
Q 043056 254 KKILIILDNIWENLD--------------LRVVGIPHGDGHKDCKVLLTARSLDVLS-GKM---DSRPNFSIGVLNEEEA 315 (559)
Q Consensus 254 kr~LlVlDdv~~~~~--------------~~~l~~~~~~~~~gs~IivTTR~~~va~-~~~---~~~~~~~l~~L~~~ea 315 (559)
.+++|++|+++.... ...+...+.....+.-||.||.+..... ... .-...+.++.-+.++-
T Consensus 318 ~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR 397 (489)
T CHL00195 318 SPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEER 397 (489)
T ss_pred CCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHH
Confidence 789999999964210 0111111222233445666776544221 111 2345788888899999
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 043056 316 WNLFKKMAGDYIEGSEFQSVARDVAKECAGLP 347 (559)
Q Consensus 316 ~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (559)
.++|+.+.........-..-...+++.+.|..
T Consensus 398 ~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 398 EKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred HHHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 99998887532211100112456667776654
No 135
>PRK08116 hypothetical protein; Validated
Probab=97.49 E-value=0.00046 Score=67.16 Aligned_cols=101 Identities=22% Similarity=0.216 Sum_probs=59.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCe
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKK 255 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 255 (559)
..+.++|..|+|||.||..+++....+ -..+++++ ..+++..+........ ......+.+.+.. -
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~-----~~~~~~~~~~l~~-~- 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSG-----KEDENEIIRSLVN-A- 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhccc-----cccHHHHHHHhcC-C-
Confidence 458899999999999999999997654 33456665 4455555555443211 1122334455542 2
Q ss_pred EEEEEeCCC--cccccch--hcCCCCC-CCCCcEEEEEecC
Q 043056 256 ILIILDNIW--ENLDLRV--VGIPHGD-GHKDCKVLLTARS 291 (559)
Q Consensus 256 ~LlVlDdv~--~~~~~~~--l~~~~~~-~~~gs~IivTTR~ 291 (559)
=||||||+. ...+|.. +...+.. -..+..+|+||..
T Consensus 180 dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 180 DLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 389999994 3344432 1111110 1234568888864
No 136
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.48 E-value=0.004 Score=62.49 Aligned_cols=164 Identities=10% Similarity=0.071 Sum_probs=99.1
Q ss_pred HHHHHHHHcCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhccc--------------------CCCCeEEEEEeCCCcCHH
Q 043056 162 TLRNILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKVKSD--------------------KLFDQVVFVEVSQNQDIR 220 (559)
Q Consensus 162 ~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~--------------------~~f~~~~wv~~s~~~~~~ 220 (559)
..++|...+..++ ...+.++|+.|+||+++|..++...--. .|.|.. ++.-...
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~-~i~p~~~---- 84 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYY-TLTPEKG---- 84 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEE-EEecccc----
Confidence 4556666666544 4578899999999999999988875321 122221 1110000
Q ss_pred HHHHHHHHHhCCCCcCCChhhhHHHHHHHHH----cCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEEEecC-cc
Q 043056 221 KLQGEIADKLGLKFHEESESGRANSLFKRIK----AEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLLTARS-LD 293 (559)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~-~~ 293 (559)
...-..+.+..+.+.+. .+++=++|+|+++.. ..-+.+...+-.-..++.+|++|.+ ..
T Consensus 85 --------------~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~ 150 (334)
T PRK07993 85 --------------KSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPAR 150 (334)
T ss_pred --------------cccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhh
Confidence 00012233444444442 256678999998754 3344555555444556666666665 44
Q ss_pred hhccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHH
Q 043056 294 VLSGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSV 350 (559)
Q Consensus 294 va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 350 (559)
+..........+.+.+++.+++.+.+....+ .+ .+.+..++..++|.|...
T Consensus 151 lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~--~~----~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 151 LLATLRSRCRLHYLAPPPEQYALTWLSREVT--MS----QDALLAALRLSAGAPGAA 201 (334)
T ss_pred ChHHHHhccccccCCCCCHHHHHHHHHHccC--CC----HHHHHHHHHHcCCCHHHH
Confidence 4433344556889999999999988866432 11 233677899999999644
No 137
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.47 E-value=0.00062 Score=60.91 Aligned_cols=137 Identities=15% Similarity=0.134 Sum_probs=75.1
Q ss_pred chHHHHHHHHHHcCCCCce-EEEEEcCCCCcHHHHHHHHHHHhcccCCC------------------CeEEEEEeCCC--
Q 043056 158 SRMFTLRNILSALEDPDVN-MLGIYGMGGIGKTMLAEEVARKVKSDKLF------------------DQVVFVEVSQN-- 216 (559)
Q Consensus 158 gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f------------------~~~~wv~~s~~-- 216 (559)
|-+...+.|.+.+..++.. .+.++|+.|+||+++|..+.+..-..... .-..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 4456677777777665544 68999999999999999999875432221 11333332221
Q ss_pred -cCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEEEecCcc
Q 043056 217 -QDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLLTARSLD 293 (559)
Q Consensus 217 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~ 293 (559)
....++ +++...+..... .++.=++|+|+++.. .....++..+-....++.+|++|.+..
T Consensus 81 ~i~i~~i-r~i~~~~~~~~~----------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 81 SIKIDQI-REIIEFLSLSPS----------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SBSHHHH-HHHHHHCTSS-T----------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred hhhHHHH-HHHHHHHHHHHh----------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 222222 233333322111 245678999999765 445556555555556888888888754
Q ss_pred -hhccCCCCCCeeecCCCC
Q 043056 294 -VLSGKMDSRPNFSIGVLN 311 (559)
Q Consensus 294 -va~~~~~~~~~~~l~~L~ 311 (559)
+..........+++.+|+
T Consensus 144 ~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 144 KILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GS-HHHHTTSEEEEE----
T ss_pred HChHHHHhhceEEecCCCC
Confidence 333333445567776654
No 138
>PRK04132 replication factor C small subunit; Provisional
Probab=97.47 E-value=0.0027 Score=70.67 Aligned_cols=155 Identities=12% Similarity=0.053 Sum_probs=96.0
Q ss_pred CCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeC
Q 043056 183 MGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDN 262 (559)
Q Consensus 183 ~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDd 262 (559)
|.++||||+|..+++..-..+.-..++-++.+...+...+ ++++..+..... +...+.-++|+|+
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~I-R~iIk~~a~~~~--------------~~~~~~KVvIIDE 638 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASDERGINVI-REKVKEFARTKP--------------IGGASFKIIFLDE 638 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHH-HHHHHHHHhcCC--------------cCCCCCEEEEEEC
Confidence 8899999999999998633221134677888876665543 333332211000 0012457999999
Q ss_pred CCccc--ccchhcCCCCCCCCCcEEEEEecCc-chhccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHH
Q 043056 263 IWENL--DLRVVGIPHGDGHKDCKVLLTARSL-DVLSGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDV 339 (559)
Q Consensus 263 v~~~~--~~~~l~~~~~~~~~gs~IivTTR~~-~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I 339 (559)
++... ....+...+......+++|++|.+. .+..........+++.+++.++....+...+....-. --.+....|
T Consensus 639 aD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~-i~~e~L~~I 717 (846)
T PRK04132 639 ADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE-LTEEGLQAI 717 (846)
T ss_pred cccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHH
Confidence 98763 4555554444334566777666553 3333233456799999999999998888766422111 114568899
Q ss_pred HHHhCCChHHHHHH
Q 043056 340 AKECAGLPVSVVTI 353 (559)
Q Consensus 340 ~~~c~GlPLai~~~ 353 (559)
++.|+|.+-....+
T Consensus 718 a~~s~GDlR~AIn~ 731 (846)
T PRK04132 718 LYIAEGDMRRAINI 731 (846)
T ss_pred HHHcCCCHHHHHHH
Confidence 99999998544333
No 139
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.47 E-value=0.0058 Score=61.28 Aligned_cols=104 Identities=13% Similarity=0.149 Sum_probs=65.8
Q ss_pred hhHHHHHHHHH----cCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEEEecC-cchhccCCCCCCeeecCCCCHH
Q 043056 241 GRANSLFKRIK----AEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLLTARS-LDVLSGKMDSRPNFSIGVLNEE 313 (559)
Q Consensus 241 ~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~-~~va~~~~~~~~~~~l~~L~~~ 313 (559)
+.+..+.+.+. .+++=++|+|+++.. ...+.+...+-.-.+++.+|++|.+ ..+..........+.+.+++.+
T Consensus 115 dqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~ 194 (342)
T PRK06964 115 EQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPE 194 (342)
T ss_pred HHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHH
Confidence 34444554442 245568889999755 4456665555555566766665555 4454434445679999999999
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 043056 314 EAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTI 353 (559)
Q Consensus 314 ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 353 (559)
+..+.+... + . +. ...++..++|.|+....+
T Consensus 195 ~~~~~L~~~-~--~--~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 195 AAAAWLAAQ-G--V--AD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred HHHHHHHHc-C--C--Ch----HHHHHHHcCCCHHHHHHH
Confidence 999988775 2 1 11 233578899999755433
No 140
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.46 E-value=0.0044 Score=58.02 Aligned_cols=181 Identities=15% Similarity=0.142 Sum_probs=103.7
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEe-CCCcCHHHHHHHHHHHhCCCCcCCC--hhh-hHHHHH
Q 043056 172 DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEV-SQNQDIRKLQGEIADKLGLKFHEES--ESG-RANSLF 247 (559)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~-s~~~~~~~~~~~i~~~l~~~~~~~~--~~~-~~~~l~ 247 (559)
..+.+++.++|.-|+|||++.+......... .++-+.+ .+..+...+...|+..+..+....- ..+ ....+.
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d----~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNED----QVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCC----ceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 4455799999999999999999555544322 1222333 3445667777888887766322111 111 222344
Q ss_pred HHHHcCCe-EEEEEeCCCcc--cccchhcC--CCC-CCCCCcEEEEEecC--------cchhccCCCCCCeeecCCCCHH
Q 043056 248 KRIKAEKK-ILIILDNIWEN--LDLRVVGI--PHG-DGHKDCKVLLTARS--------LDVLSGKMDSRPNFSIGVLNEE 313 (559)
Q Consensus 248 ~~l~~~kr-~LlVlDdv~~~--~~~~~l~~--~~~-~~~~gs~IivTTR~--------~~va~~~~~~~~~~~l~~L~~~ 313 (559)
....++++ ..+++||..+. ...+.++. .+. +...--+|+..-.- ...........-.|.+.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 44455777 99999999754 22332211 110 11111123322111 0000100111223899999999
Q ss_pred HHHHHHHHHhCCCCCCcc--hHHHHHHHHHHhCCChHHHHHHHHH
Q 043056 314 EAWNLFKKMAGDYIEGSE--FQSVARDVAKECAGLPVSVVTIARA 356 (559)
Q Consensus 314 ea~~Lf~~~~~~~~~~~~--~~~~~~~I~~~c~GlPLai~~~~~~ 356 (559)
+...+++.+......++. -.+....|.....|.|.+|..++..
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 999999988864332222 2456788999999999999887643
No 141
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=97.43 E-value=0.0023 Score=55.64 Aligned_cols=110 Identities=15% Similarity=0.160 Sum_probs=83.5
Q ss_pred hhHH-HHHHHHHHhhhhHHHHHhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Q 043056 2 AEII-LTIVVEVVKCLAPPAYRQISYLRESKCTGNVQNLKAEVENLKSERVSTQHKVDEAKRKGEEIEENVENWLARANN 80 (559)
Q Consensus 2 a~~~-~s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~v~~Wl~~v~~ 80 (559)
||++ +++++.+++.+...+........ ..+.-++.|...++.|..++.+.+..+...+..-+.-++++.+
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~---------~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~ 73 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSL---------SFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKE 73 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHH
Confidence 4555 45677777777766666666666 6677788888888888999998887765556666888999999
Q ss_pred HHHHHHhhhhHHHhhchhcccCcCCChhhhhHHHHHHHHHHHHHHHH
Q 043056 81 VIVEADKFTDDEATANKRCFKGLCPNLKTRRRLSKEAERQKEAAVKV 127 (559)
Q Consensus 81 ~ayd~ed~ld~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~l~~i 127 (559)
...+++++++.|..-. ++++...++.+++|+++.+.+...
T Consensus 74 ~L~~g~~LV~k~sk~~-------r~n~~kk~~y~~Ki~~le~~l~~f 113 (147)
T PF05659_consen 74 LLEKGKELVEKCSKVR-------RWNLYKKPRYARKIEELEESLRRF 113 (147)
T ss_pred HHHHHHHHHHHhcccc-------HHHHHhhHhHHHHHHHHHHHHHHH
Confidence 9999999999876433 345666777899999888887765
No 142
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.41 E-value=0.00039 Score=65.59 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=30.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeC
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVS 214 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 214 (559)
-.++|.|++|+|||||+..+...... .|..+++++-.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~--~f~~I~l~t~~ 50 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRH--KFDHIFLITPE 50 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcc--cCCEEEEEecC
Confidence 36889999999999999999988665 48887777553
No 143
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0027 Score=67.62 Aligned_cols=157 Identities=21% Similarity=0.227 Sum_probs=93.4
Q ss_pred CCCccchHHHHHHHHHHcC------CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHH
Q 043056 153 YLPFESRMFTLRNILSALE------DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEI 226 (559)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 226 (559)
....+|-++..++|++.|. .-+-++++++||+|+|||+|++.++.....+ | +-++++.-.|..++-..=
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--f---vR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK--F---VRISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC--E---EEEecCccccHHHhcccc
Confidence 3457888999999999875 2234799999999999999999999987754 4 344556555544431110
Q ss_pred HHHhCCCCcCCChhhhHHHHHHHHH--cCCeEEEEEeCCCcccc---------cchhcCC-----CCCC----C-CCcEE
Q 043056 227 ADKLGLKFHEESESGRANSLFKRIK--AEKKILIILDNIWENLD---------LRVVGIP-----HGDG----H-KDCKV 285 (559)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~l~--~~kr~LlVlDdv~~~~~---------~~~l~~~-----~~~~----~-~gs~I 285 (559)
- ..-.... .++.+.+. +.++=+++||.++.... +-.++.| |.+. . -=|.|
T Consensus 397 R------TYIGamP---GrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 397 R------TYIGAMP---GKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred c------cccccCC---hHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 0 0000111 12333332 24567899999864311 1111111 1100 0 01333
Q ss_pred -EEEe-cCcc-hhccCCCCCCeeecCCCCHHHHHHHHHHHh
Q 043056 286 -LLTA-RSLD-VLSGKMDSRPNFSIGVLNEEEAWNLFKKMA 323 (559)
Q Consensus 286 -ivTT-R~~~-va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 323 (559)
.|+| .+-+ ++...++...+|++.+.+++|=.++-++++
T Consensus 468 mFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 3344 4333 444456778899999999999998888776
No 144
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.35 E-value=0.0015 Score=65.48 Aligned_cols=100 Identities=13% Similarity=0.198 Sum_probs=65.8
Q ss_pred HHHHHHcCC-CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCe-EEEEEeCC-CcCHHHHHHHHHHHhCCCCcCCChh
Q 043056 164 RNILSALED-PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQ-VVFVEVSQ-NQDIRKLQGEIADKLGLKFHEESES 240 (559)
Q Consensus 164 ~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~ 240 (559)
.++++.+.. +.-.-+.|+|+.|+|||||++.+.+....+ +-+. ++|+.+.+ ...+.++++.+...+.....+.+..
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~ 199 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPD 199 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHH
Confidence 446666652 223457899999999999999999887554 3344 46766765 4577888888887776543322221
Q ss_pred h------hHHHHHHHH-HcCCeEEEEEeCCC
Q 043056 241 G------RANSLFKRI-KAEKKILIILDNIW 264 (559)
Q Consensus 241 ~------~~~~l~~~l-~~~kr~LlVlDdv~ 264 (559)
. .+....+.+ .++++.+||+|++.
T Consensus 200 ~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 200 EHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 1 122333333 35899999999994
No 145
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.34 E-value=0.0018 Score=73.11 Aligned_cols=106 Identities=16% Similarity=0.207 Sum_probs=58.4
Q ss_pred CCccchHHHHHHHHHHcC-------C--CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHH
Q 043056 154 LPFESRMFTLRNILSALE-------D--PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQG 224 (559)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~-------~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 224 (559)
..++|.+..++.+.+.+. . ....++.++||+|+|||.||+.+....-.. ....+-++++..... .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~~~~----~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG--EQNLITINMSEFQEA----H 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC--CcceEEEeHHHhhhh----h
Confidence 347788888888777663 1 233578999999999999999998875422 122233333321111 1
Q ss_pred HHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcc
Q 043056 225 EIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWEN 266 (559)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 266 (559)
.+.+-+|.+..-.. ......+.+.+.+....+|+||++...
T Consensus 640 ~~~~l~g~~~gyvg-~~~~g~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 640 TVSRLKGSPPGYVG-YGEGGVLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred hhccccCCCCCccc-ccccchHHHHHHhCCCcEEEEechhhc
Confidence 11111222211111 011122444555456679999999643
No 146
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.34 E-value=0.0075 Score=68.45 Aligned_cols=105 Identities=17% Similarity=0.243 Sum_probs=57.0
Q ss_pred CccchHHHHHHHHHHcC-------CC--CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHH
Q 043056 155 PFESRMFTLRNILSALE-------DP--DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGE 225 (559)
Q Consensus 155 ~~~gR~~~~~~l~~~L~-------~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 225 (559)
.++|.+..++.+...+. ++ ...++.++|+.|+|||++|+.+++..... -...+.++++.... .. .
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~--~~~~i~id~se~~~-~~---~ 642 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS--DDAMVRIDMSEFME-KH---S 642 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC--CCcEEEEEhHHhhh-hh---h
Confidence 46788887777766654 11 12478899999999999999999875422 12334454443211 11 1
Q ss_pred HHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcc
Q 043056 226 IADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWEN 266 (559)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 266 (559)
+.+-+|.+.. -...+....+.+.+.....-+|+||++...
T Consensus 643 ~~~LiG~~pg-y~g~~~~g~l~~~v~~~p~~vLllDEieka 682 (857)
T PRK10865 643 VSRLVGAPPG-YVGYEEGGYLTEAVRRRPYSVILLDEVEKA 682 (857)
T ss_pred HHHHhCCCCc-ccccchhHHHHHHHHhCCCCeEEEeehhhC
Confidence 1122232211 111111122334443333469999999744
No 147
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.33 E-value=0.0077 Score=63.12 Aligned_cols=88 Identities=19% Similarity=0.315 Sum_probs=49.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCC-cCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcC
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQN-QDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAE 253 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (559)
..+|+|+|++|+||||++..+......+.....+..++.... ....+.+....+.++...........+...++.+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~-- 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR-- 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc--
Confidence 478999999999999999998876544322234555554321 12223333334444443333222333344444443
Q ss_pred CeEEEEEeCCC
Q 043056 254 KKILIILDNIW 264 (559)
Q Consensus 254 kr~LlVlDdv~ 264 (559)
..-+|++|..-
T Consensus 428 ~~DLVLIDTaG 438 (559)
T PRK12727 428 DYKLVLIDTAG 438 (559)
T ss_pred cCCEEEecCCC
Confidence 34578888773
No 148
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.31 E-value=0.0037 Score=70.16 Aligned_cols=172 Identities=17% Similarity=0.203 Sum_probs=94.9
Q ss_pred CCccchHHHHHHHHHHcC-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHH
Q 043056 154 LPFESRMFTLRNILSALE-------------DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIR 220 (559)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 220 (559)
..+.|.+...+.|.+.+. -...+-+.++|++|+|||++|+.+++..... | +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~--f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN--F-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E-----EEEehH----
Confidence 345566655555544432 1234568899999999999999999976532 2 222211
Q ss_pred HHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc---------c-----cchhcCCCCC--CCCCcE
Q 043056 221 KLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL---------D-----LRVVGIPHGD--GHKDCK 284 (559)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~---------~-----~~~l~~~~~~--~~~gs~ 284 (559)
+ ++.. ..+. ....+..+........+++|+||+++... . ...+...+.. ...+..
T Consensus 522 ~----l~~~----~vGe-se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 E----ILSK----WVGE-SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred H----Hhhc----ccCc-HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 1 1111 1111 12234445555555678999999986421 0 1112222211 223455
Q ss_pred EEEEecCcchhc-cCC---CCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 043056 285 VLLTARSLDVLS-GKM---DSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLP 347 (559)
Q Consensus 285 IivTTR~~~va~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (559)
||.||....... ... .....+.++..+.++-.++|+.+.......+.. -...+++.|.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~--~l~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDV--DLEELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHcCCCC
Confidence 666776554331 112 234688899999999999998776533222211 1456777888765
No 149
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.31 E-value=0.0031 Score=58.87 Aligned_cols=172 Identities=17% Similarity=0.246 Sum_probs=101.5
Q ss_pred CCccchHHHHH---HHHHHcCCC------CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHH
Q 043056 154 LPFESRMFTLR---NILSALEDP------DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQG 224 (559)
Q Consensus 154 ~~~~gR~~~~~---~l~~~L~~~------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 224 (559)
..++|.++... -|++.|.++ .++-|..+|++|.|||.+|+.+++..++- | +.+. ..+++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~-----l~vk----at~li- 188 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L-----LLVK----ATELI- 188 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--e-----EEec----hHHHH-
Confidence 45677666544 366677643 47889999999999999999999987653 2 1111 11111
Q ss_pred HHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc--------------ccchhcCCCC--CCCCCcEEEEE
Q 043056 225 EIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL--------------DLRVVGIPHG--DGHKDCKVLLT 288 (559)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--------------~~~~l~~~~~--~~~~gs~IivT 288 (559)
-+.. .+....+..+.++..+.-+|++.+|.++... ..+.+...+. ..+.|...|-.
T Consensus 189 --GehV------Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaa 260 (368)
T COG1223 189 --GEHV------GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAA 260 (368)
T ss_pred --HHHh------hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEee
Confidence 1111 1234456667777666779999999985321 1122222221 23456666777
Q ss_pred ecCcchhccCC--CCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 043056 289 ARSLDVLSGKM--DSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLP 347 (559)
Q Consensus 289 TR~~~va~~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (559)
|.+...+.... .-...|+..--+++|-.+++..++..-..+-+ .-.+.++++.+|+.
T Consensus 261 TN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~--~~~~~~~~~t~g~S 319 (368)
T COG1223 261 TNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD--ADLRYLAAKTKGMS 319 (368)
T ss_pred cCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc--cCHHHHHHHhCCCC
Confidence 77665542222 22346667777888889999888753211111 11456777777753
No 150
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.013 Score=64.22 Aligned_cols=113 Identities=16% Similarity=0.221 Sum_probs=64.4
Q ss_pred ccchHHHHHHHHHHcC---------CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHH
Q 043056 156 FESRMFTLRNILSALE---------DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEI 226 (559)
Q Consensus 156 ~~gR~~~~~~l~~~L~---------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 226 (559)
++|-+..++.+.+.+. +....+....||.|||||.||+.++...-... +..+-+++|..-. . ..+
T Consensus 493 ViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e--~aliR~DMSEy~E-k---HsV 566 (786)
T COG0542 493 VIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE--QALIRIDMSEYME-K---HSV 566 (786)
T ss_pred eeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC--ccceeechHHHHH-H---HHH
Confidence 7788888888877764 23456788899999999999999998764321 3344444443211 1 112
Q ss_pred HHHhCCCCcCCChhhhHHHHHHHHHcCCeE-EEEEeCCCcc--cccchhcCCC
Q 043056 227 ADKLGLKFHEESESGRANSLFKRIKAEKKI-LIILDNIWEN--LDLRVVGIPH 276 (559)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~-LlVlDdv~~~--~~~~~l~~~~ 276 (559)
.+-+|.++.-- .-+....+-+... .++| +|.||++... +..+-+...+
T Consensus 567 SrLIGaPPGYV-GyeeGG~LTEaVR-r~PySViLlDEIEKAHpdV~nilLQVl 617 (786)
T COG0542 567 SRLIGAPPGYV-GYEEGGQLTEAVR-RKPYSVILLDEIEKAHPDVFNLLLQVL 617 (786)
T ss_pred HHHhCCCCCCc-eeccccchhHhhh-cCCCeEEEechhhhcCHHHHHHHHHHh
Confidence 23333332111 1111334555555 4666 8889999754 3344443333
No 151
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.28 E-value=0.0023 Score=71.66 Aligned_cols=102 Identities=17% Similarity=0.247 Sum_probs=57.2
Q ss_pred CccchHHHHHHHHHHcC-------CC--CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHH
Q 043056 155 PFESRMFTLRNILSALE-------DP--DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGE 225 (559)
Q Consensus 155 ~~~gR~~~~~~l~~~L~-------~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 225 (559)
.++|.+..++.+...+. ++ ...++.++|++|+|||+||+.++.... ...+.++++...... .
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~----~ 525 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKH----T 525 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhcc----c
Confidence 35666666676666554 11 234688999999999999999998763 234555554422211 1
Q ss_pred HHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcc
Q 043056 226 IADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWEN 266 (559)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 266 (559)
+.+.++.+.... ..+....+.+.+......+++||+++..
T Consensus 526 ~~~lig~~~gyv-g~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 526 VSRLIGAPPGYV-GFEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred HHHHhcCCCCCc-ccchhhHHHHHHHhCCCeEEEEechhhc
Confidence 112222211100 1112223444444444569999999754
No 152
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.26 E-value=0.0019 Score=69.31 Aligned_cols=49 Identities=27% Similarity=0.349 Sum_probs=39.7
Q ss_pred CCCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 151 KDYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.....++|....++.+...+..+...-+.|+|++|+|||++|+.+++..
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3345688999888888877765555678899999999999999998754
No 153
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.041 Score=55.92 Aligned_cols=149 Identities=15% Similarity=0.138 Sum_probs=80.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCe
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKK 255 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 255 (559)
|=-.++||+|.|||++..++++... |+.+- +.++...+-.+ +..++..- ..+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----ydIyd-LeLt~v~~n~d---------------------Lr~LL~~t--~~k 287 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YDIYD-LELTEVKLDSD---------------------LRHLLLAT--PNK 287 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----CceEE-eeeccccCcHH---------------------HHHHHHhC--CCC
Confidence 4567999999999999999999876 54331 22222111111 22222221 345
Q ss_pred EEEEEeCCCcccc--------------------cchhcCCC--CCCCC-CcEEE-EEecCcchh-ccCCC---CCCeeec
Q 043056 256 ILIILDNIWENLD--------------------LRVVGIPH--GDGHK-DCKVL-LTARSLDVL-SGKMD---SRPNFSI 307 (559)
Q Consensus 256 ~LlVlDdv~~~~~--------------------~~~l~~~~--~~~~~-gs~Ii-vTTR~~~va-~~~~~---~~~~~~l 307 (559)
-+||+.|++..-+ +..++..+ .+..+ +-||| .||...+-+ +..+. -...+.+
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 7777777753311 01111111 01222 23555 466554322 11222 2347889
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHH
Q 043056 308 GVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTIARA 356 (559)
Q Consensus 308 ~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~ 356 (559)
.--+.+....|+.++.+...++ .++.+|.+.-.|.-+.=..++..
T Consensus 368 gyCtf~~fK~La~nYL~~~~~h----~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGIEEDH----RLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred CCCCHHHHHHHHHHhcCCCCCc----chhHHHHHHhhcCccCHHHHHHH
Confidence 9999999999999999754332 34555555555554433444433
No 154
>PRK07261 topology modulation protein; Provisional
Probab=97.25 E-value=0.0012 Score=59.71 Aligned_cols=34 Identities=26% Similarity=0.482 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccc-CCCCeEEE
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVKSD-KLFDQVVF 210 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~w 210 (559)
.|.|+|++|+||||||+.+....... -+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 48999999999999999998775432 13455555
No 155
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.24 E-value=0.00098 Score=64.23 Aligned_cols=81 Identities=23% Similarity=0.344 Sum_probs=52.0
Q ss_pred HHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHH
Q 043056 166 ILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANS 245 (559)
Q Consensus 166 l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 245 (559)
+.+++. +..-+.++|++|+|||.||..+.+... +..+ .+.+++ ..+++.++...... ......
T Consensus 98 ~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~------~~el~~~Lk~~~~~-------~~~~~~ 160 (254)
T COG1484 98 LVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFIT------APDLLSKLKAAFDE-------GRLEEK 160 (254)
T ss_pred HHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEE------HHHHHHHHHHHHhc-------CchHHH
Confidence 334443 566799999999999999999999987 3223 355554 45666666655432 111223
Q ss_pred HHHHHHcCCeEEEEEeCCCc
Q 043056 246 LFKRIKAEKKILIILDNIWE 265 (559)
Q Consensus 246 l~~~l~~~kr~LlVlDdv~~ 265 (559)
+.+.+. +-=||||||+-.
T Consensus 161 l~~~l~--~~dlLIiDDlG~ 178 (254)
T COG1484 161 LLRELK--KVDLLIIDDIGY 178 (254)
T ss_pred HHHHhh--cCCEEEEecccC
Confidence 444343 345999999943
No 156
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.22 E-value=0.022 Score=57.84 Aligned_cols=192 Identities=15% Similarity=0.198 Sum_probs=115.6
Q ss_pred hHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHH-HHHHHHhcccCCCCeEEEEEeCC---CcCHHHHHHHHHHHhCCC-
Q 043056 159 RMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLA-EEVARKVKSDKLFDQVVFVEVSQ---NQDIRKLQGEIADKLGLK- 233 (559)
Q Consensus 159 R~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~~~l~~~- 233 (559)
|.+..++|..||.+..-..|.|.||-|+||+.|+ .++..+.+ .++.+.+.+ ..+-..++..++.++|.-
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 5677899999999877789999999999999999 66665432 266666543 223344555555555421
Q ss_pred ----------------------CcC--CChhhhHHHHH-------HHH--------------------H--cCCeEEEEE
Q 043056 234 ----------------------FHE--ESESGRANSLF-------KRI--------------------K--AEKKILIIL 260 (559)
Q Consensus 234 ----------------------~~~--~~~~~~~~~l~-------~~l--------------------~--~~kr~LlVl 260 (559)
..+ ++....+..++ +.+ . ..++=+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 111 11111111111 110 0 022568999
Q ss_pred eCCCccc-----------ccchhcCCCCCCCCCcEEEEEecCcchh---ccCC--CCCCeeecCCCCHHHHHHHHHHHhC
Q 043056 261 DNIWENL-----------DLRVVGIPHGDGHKDCKVLLTARSLDVL---SGKM--DSRPNFSIGVLNEEEAWNLFKKMAG 324 (559)
Q Consensus 261 Ddv~~~~-----------~~~~l~~~~~~~~~gs~IivTTR~~~va---~~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~ 324 (559)
|+..... +|-.. +..+ +=..||++|-+.... ...+ ...+.+.|...+++.|.++...++.
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~---Lv~~-nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~ 230 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAAS---LVQN-NIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLD 230 (431)
T ss_pred cchhccCcccchHHHHHHHHHHH---HHhc-CccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhc
Confidence 9985432 23322 1111 223577777664432 1223 2456899999999999999999886
Q ss_pred CCCCC-------------------cchHHHHHHHHHHhCCChHHHHHHHHHHhcC
Q 043056 325 DYIEG-------------------SEFQSVARDVAKECAGLPVSVVTIARALRNK 360 (559)
Q Consensus 325 ~~~~~-------------------~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~ 360 (559)
..... .....-....++.+||=-.-+..+++.++..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksG 285 (431)
T PF10443_consen 231 EDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSG 285 (431)
T ss_pred ccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcC
Confidence 43110 1233345667888888888888888888843
No 157
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.20 E-value=0.0023 Score=59.14 Aligned_cols=87 Identities=17% Similarity=0.288 Sum_probs=55.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCC-CcCHHHHHHHHHHHhCCCCcCC----ChhhhHHHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQ-NQDIRKLQGEIADKLGLKFHEE----SESGRANSLFKR 249 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~----~~~~~~~~l~~~ 249 (559)
+++|.++|+.|+||||.+..++.....+ -..+..++... .....+-++..++.++.+.... +..+......+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 4789999999999999999988887655 34577777653 3455677788888888764321 222333334444
Q ss_pred HHcCCeEEEEEeCC
Q 043056 250 IKAEKKILIILDNI 263 (559)
Q Consensus 250 l~~~kr~LlVlDdv 263 (559)
...++.=++++|-.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 43233347777765
No 158
>PRK08181 transposase; Validated
Probab=97.19 E-value=0.00068 Score=65.66 Aligned_cols=78 Identities=24% Similarity=0.230 Sum_probs=48.5
Q ss_pred HHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHH
Q 043056 168 SALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLF 247 (559)
Q Consensus 168 ~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~ 247 (559)
+|+.. ..-+.++|++|+|||.||..+.+....+ ...++|++ ..+++..+..... . .......
T Consensus 101 ~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~------~~~L~~~l~~a~~----~----~~~~~~l 162 (269)
T PRK08181 101 SWLAK--GANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTR------TTDLVQKLQVARR----E----LQLESAI 162 (269)
T ss_pred HHHhc--CceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeee------HHHHHHHHHHHHh----C----CcHHHHH
Confidence 45542 3459999999999999999999876543 23455654 3455555543211 1 1222344
Q ss_pred HHHHcCCeEEEEEeCCCc
Q 043056 248 KRIKAEKKILIILDNIWE 265 (559)
Q Consensus 248 ~~l~~~kr~LlVlDdv~~ 265 (559)
+.+. +.=||||||+..
T Consensus 163 ~~l~--~~dLLIIDDlg~ 178 (269)
T PRK08181 163 AKLD--KFDLLILDDLAY 178 (269)
T ss_pred HHHh--cCCEEEEecccc
Confidence 4443 456999999953
No 159
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.18 E-value=0.0038 Score=62.85 Aligned_cols=140 Identities=14% Similarity=0.120 Sum_probs=82.8
Q ss_pred ccchHHHHHHHHHHcC-CCCce-EEEEEcCCCCcHHHHHHHHHHHhcccCC-------------------CCeEEEEEeC
Q 043056 156 FESRMFTLRNILSALE-DPDVN-MLGIYGMGGIGKTMLAEEVARKVKSDKL-------------------FDQVVFVEVS 214 (559)
Q Consensus 156 ~~gR~~~~~~l~~~L~-~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~~~wv~~s 214 (559)
+++-+.....+..+.. .++.. .+.++|+.|+||||+|..+.+....... ...+..++.+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 4556666777777766 33344 4999999999999999999998653221 1234455554
Q ss_pred CCcC---HHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc--ccchhcCCCCCCCCCcEEEEEe
Q 043056 215 QNQD---IRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL--DLRVVGIPHGDGHKDCKVLLTA 289 (559)
Q Consensus 215 ~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTT 289 (559)
.... ..+..+++.+....... .++.-++++|+++... .-..+...+......+.+|++|
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 4443 23444444443332211 2567899999997653 2334444444445567787777
Q ss_pred cCc-chhccCCCCCCeeecCCCC
Q 043056 290 RSL-DVLSGKMDSRPNFSIGVLN 311 (559)
Q Consensus 290 R~~-~va~~~~~~~~~~~l~~L~ 311 (559)
... .+..........+++.+.+
T Consensus 147 n~~~~il~tI~SRc~~i~f~~~~ 169 (325)
T COG0470 147 NDPSKILPTIRSRCQRIRFKPPS 169 (325)
T ss_pred CChhhccchhhhcceeeecCCch
Confidence 743 3333233445577777733
No 160
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.18 E-value=0.0055 Score=62.28 Aligned_cols=181 Identities=17% Similarity=0.151 Sum_probs=98.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcC
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAE 253 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (559)
....+.|+|+.|.|||.|++.+.+.......=..+++++ ......+++..+.. .....+.+.. +
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~------se~f~~~~v~a~~~--------~~~~~Fk~~y-~- 175 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT------SEDFTNDFVKALRD--------NEMEKFKEKY-S- 175 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc------HHHHHHHHHHHHHh--------hhHHHHHHhh-c-
Confidence 367899999999999999999999987652222355543 23333333333321 1223344443 1
Q ss_pred CeEEEEEeCCCcccc---cch----hcCCCCCCCCCcEEEEEecCcchh--------ccCCCCCCeeecCCCCHHHHHHH
Q 043056 254 KKILIILDNIWENLD---LRV----VGIPHGDGHKDCKVLLTARSLDVL--------SGKMDSRPNFSIGVLNEEEAWNL 318 (559)
Q Consensus 254 kr~LlVlDdv~~~~~---~~~----l~~~~~~~~~gs~IivTTR~~~va--------~~~~~~~~~~~l~~L~~~ea~~L 318 (559)
-=++++||++-... |+. +...+.. .|-.||+|++...-. .......-++.+.+.+.+....+
T Consensus 176 -~dlllIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 176 -LDLLLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred -cCeeeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 23889999975322 221 1222222 233899998653221 11233456899999999999999
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHHhC----CChHHHHHHHHHHh--cC--ChHHHHHHHHHhcC
Q 043056 319 FKKMAGDYIEGSEFQSVARDVAKECA----GLPVSVVTIARALR--NK--RLFEWKDALEQLRR 374 (559)
Q Consensus 319 f~~~~~~~~~~~~~~~~~~~I~~~c~----GlPLai~~~~~~L~--~~--~~~~w~~~l~~l~~ 374 (559)
+.+.+......-. .++..-|++... -+.-|+..+..+-. ++ +...-..++..+..
T Consensus 253 L~kka~~~~~~i~-~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~ 315 (408)
T COG0593 253 LRKKAEDRGIEIP-DEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLR 315 (408)
T ss_pred HHHHHHhcCCCCC-HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhc
Confidence 9987652211110 223333333333 23344433333322 21 56666666666443
No 161
>PHA00729 NTP-binding motif containing protein
Probab=97.18 E-value=0.0018 Score=60.41 Aligned_cols=36 Identities=39% Similarity=0.438 Sum_probs=28.5
Q ss_pred HHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 165 NILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 165 ~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.+++.+...+...|.|+|.+|+||||||..+.+...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344445555667899999999999999999998753
No 162
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.18 E-value=0.017 Score=57.64 Aligned_cols=30 Identities=33% Similarity=0.452 Sum_probs=26.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVKSD 202 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (559)
..+..+.|||++|.|||.+|+.+++.....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 456899999999999999999999987753
No 163
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.15 E-value=0.0022 Score=60.06 Aligned_cols=47 Identities=21% Similarity=0.316 Sum_probs=36.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQG 224 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 224 (559)
-.++.|+|++|+|||+++.++....... -..++|++... ++...+.+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHHH
Confidence 4789999999999999999988776533 46789999876 55555443
No 164
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.13 E-value=0.0026 Score=71.33 Aligned_cols=174 Identities=16% Similarity=0.175 Sum_probs=92.5
Q ss_pred CCCccchHHHHHHHHHHcC-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCH
Q 043056 153 YLPFESRMFTLRNILSALE-------------DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDI 219 (559)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 219 (559)
+..+.|.+..++.+.+.+. -...+-+.++|++|+|||+||+.+++..... | +.++.+
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~--~---i~i~~~----- 246 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY--F---ISINGP----- 246 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe--E---EEEecH-----
Confidence 3456788888877766552 1234678899999999999999999876422 2 222211
Q ss_pred HHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcccc-------------cchhcCCCCC-CCCCcEE
Q 043056 220 RKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENLD-------------LRVVGIPHGD-GHKDCKV 285 (559)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~-~~~gs~I 285 (559)
++. .. ... ........+.+......+.+|+||+++.... ...+...+.. ...+..+
T Consensus 247 -~i~----~~----~~g-~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 -EIM----SK----YYG-ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred -HHh----cc----ccc-HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 110 00 000 1112233444444446678999999854210 1112111111 1123334
Q ss_pred EE-EecCcchh-ccCC---CCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH
Q 043056 286 LL-TARSLDVL-SGKM---DSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPV 348 (559)
Q Consensus 286 iv-TTR~~~va-~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 348 (559)
+| ||....-. .... .-...+.+...+.++-.++++..........+ .....+++.+.|..-
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d--~~l~~la~~t~G~~g 382 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED--VDLDKLAEVTHGFVG 382 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc--cCHHHHHHhCCCCCH
Confidence 44 44432211 1011 12346788888999888888866543221111 124667788888653
No 165
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.13 E-value=0.019 Score=65.15 Aligned_cols=106 Identities=14% Similarity=0.208 Sum_probs=58.5
Q ss_pred CCccchHHHHHHHHHHcC-------CC--CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHH
Q 043056 154 LPFESRMFTLRNILSALE-------DP--DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQG 224 (559)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~-------~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 224 (559)
..++|-+..++.+...+. ++ ...++.++||.|+|||+||+.+++..-.. -...+-++.+.......
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~--- 583 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHT--- 583 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhcccccc---
Confidence 347788888888777664 12 23467799999999999999999875322 12334444443222111
Q ss_pred HHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcc
Q 043056 225 EIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWEN 266 (559)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 266 (559)
+.+-+|.+. +--..+....+.+.+......+++||+++..
T Consensus 584 -~~~l~g~~~-gyvg~~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 584 -VSKLIGSPP-GYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred -HHHhcCCCC-cccCcCccchHHHHHHhCCCeEEEECChhhC
Confidence 111122211 1001111223445555333468999999754
No 166
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.12 E-value=0.0029 Score=60.48 Aligned_cols=90 Identities=22% Similarity=0.279 Sum_probs=55.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCC----CCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcC----------CC-
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKL----FDQVVFVEVSQNQDIRKLQGEIADKLGLKFHE----------ES- 238 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----------~~- 238 (559)
.-.++.|+|++|+|||+|+.+++........ ...++|++....++...+ .++++..+..... .+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCCH
Confidence 3478999999999999999999865332211 257899998887765544 3344443322110 01
Q ss_pred --hhhhHHHHHHHHHcC-CeEEEEEeCCC
Q 043056 239 --ESGRANSLFKRIKAE-KKILIILDNIW 264 (559)
Q Consensus 239 --~~~~~~~l~~~l~~~-kr~LlVlDdv~ 264 (559)
.......+...+.+. +.-|||+|.+.
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 111223344444444 77899999884
No 167
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0067 Score=64.39 Aligned_cols=153 Identities=14% Similarity=0.079 Sum_probs=86.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCC--cCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQN--QDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKA 252 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 252 (559)
..-|.|.|+.|+|||+||+.+++... +++...+.+++++.- ..+..+++.+-.. +.+.+ .
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~v----------------fse~~-~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNV----------------FSEAL-W 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHH----------------HHHHH-h
Confidence 45688999999999999999999887 445555666766542 2333333332211 11222 2
Q ss_pred CCeEEEEEeCCCcc--------cccc-----------hhcCCCCCCCCCcEEEEEecCcchhcc----CCCCCCeeecCC
Q 043056 253 EKKILIILDNIWEN--------LDLR-----------VVGIPHGDGHKDCKVLLTARSLDVLSG----KMDSRPNFSIGV 309 (559)
Q Consensus 253 ~kr~LlVlDdv~~~--------~~~~-----------~l~~~~~~~~~gs~IivTTR~~~va~~----~~~~~~~~~l~~ 309 (559)
..+-++||||++.. .+|. ++...+...+..-.+|.|.....-... ..-...+..|.+
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 46899999999632 1221 111112122222245555554332211 112345788999
Q ss_pred CCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCC
Q 043056 310 LNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGL 346 (559)
Q Consensus 310 L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl 346 (559)
+..++-.++++........... .+...-+..+|+|.
T Consensus 573 p~~~~R~~IL~~~~s~~~~~~~-~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 573 PAVTRRKEILTTIFSKNLSDIT-MDDLDFLSVKTEGY 608 (952)
T ss_pred cchhHHHHHHHHHHHhhhhhhh-hHHHHHHHHhcCCc
Confidence 9998888888776643221111 22233377888875
No 168
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0025 Score=65.28 Aligned_cols=93 Identities=27% Similarity=0.298 Sum_probs=60.9
Q ss_pred CCccc---hHHHHHHHHHHcCCC---------CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHH
Q 043056 154 LPFES---RMFTLRNILSALEDP---------DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRK 221 (559)
Q Consensus 154 ~~~~g---R~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 221 (559)
.++.| -..|++++++.|.++ =++=|.++||+|.|||-||+.++-...+- | |...+..|+..-
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP--F----F~~sGSEFdEm~ 377 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP--F----FYASGSEFDEMF 377 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC--e----Eeccccchhhhh
Confidence 34445 455788899999853 25678899999999999999999876654 2 223333333211
Q ss_pred HHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcc
Q 043056 222 LQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWEN 266 (559)
Q Consensus 222 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 266 (559)
+ . -...++..++..-+..-+|+|.+|.++..
T Consensus 378 V------G--------vGArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 378 V------G--------VGARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred h------c--------ccHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 0 0 11234455666666667999999998653
No 169
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.017 Score=59.42 Aligned_cols=159 Identities=18% Similarity=0.232 Sum_probs=89.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHH---HHHH
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSL---FKRI 250 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l---~~~l 250 (559)
....+.+.|++|+|||+||..++.... |..+--++...-. +-++......+ .+--
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~----FPFvKiiSpe~mi------------------G~sEsaKc~~i~k~F~DA 594 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSD----FPFVKIISPEDMI------------------GLSESAKCAHIKKIFEDA 594 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcC----CCeEEEeChHHcc------------------CccHHHHHHHHHHHHHHh
Confidence 456788899999999999999987644 6554433221111 11111122222 2222
Q ss_pred HcCCeEEEEEeCCCcccccchhcCCCC---------------CCCCCcEEEEEecCcchhcc-C-C-CCCCeeecCCCCH
Q 043056 251 KAEKKILIILDNIWENLDLRVVGIPHG---------------DGHKDCKVLLTARSLDVLSG-K-M-DSRPNFSIGVLNE 312 (559)
Q Consensus 251 ~~~kr~LlVlDdv~~~~~~~~l~~~~~---------------~~~~gs~IivTTR~~~va~~-~-~-~~~~~~~l~~L~~ 312 (559)
.+..--.||+||+...-+|-.++..+. ..++.--|+-||....+... . + .-...|.++.++.
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 224557899999988877776654332 22223345556666666521 1 1 1235888988887
Q ss_pred -HHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHh
Q 043056 313 -EEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTIARALR 358 (559)
Q Consensus 313 -~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~ 358 (559)
++..+.++..- ...+.+.+.++.+...+| .-..|+.+..++.
T Consensus 675 ~~~~~~vl~~~n--~fsd~~~~~~~~~~~~~~--~~vgIKklL~lie 717 (744)
T KOG0741|consen 675 GEQLLEVLEELN--IFSDDEVRAIAEQLLSKK--VNVGIKKLLMLIE 717 (744)
T ss_pred hHHHHHHHHHcc--CCCcchhHHHHHHHhccc--cchhHHHHHHHHH
Confidence 77777776643 112334455566666666 3334555544444
No 170
>PRK06526 transposase; Provisional
Probab=97.03 E-value=0.00087 Score=64.54 Aligned_cols=73 Identities=21% Similarity=0.266 Sum_probs=43.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCC
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEK 254 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 254 (559)
..-+.++|++|+|||+||..+.+.....+ + .+.|+ +..+++..+..... . .........+. +
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g-~-~v~f~------t~~~l~~~l~~~~~----~----~~~~~~l~~l~--~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAG-H-RVLFA------TAAQWVARLAAAHH----A----GRLQAELVKLG--R 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCC-C-chhhh------hHHHHHHHHHHHHh----c----CcHHHHHHHhc--c
Confidence 45689999999999999999988765432 2 23332 33445555433211 0 11122233332 4
Q ss_pred eEEEEEeCCCc
Q 043056 255 KILIILDNIWE 265 (559)
Q Consensus 255 r~LlVlDdv~~ 265 (559)
.-||||||+..
T Consensus 160 ~dlLIIDD~g~ 170 (254)
T PRK06526 160 YPLLIVDEVGY 170 (254)
T ss_pred CCEEEEccccc
Confidence 56999999964
No 171
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.02 E-value=0.0006 Score=57.69 Aligned_cols=24 Identities=38% Similarity=0.546 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
+|.|.|++|+||||+|+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999999763
No 172
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.01 E-value=0.0023 Score=63.46 Aligned_cols=116 Identities=18% Similarity=0.203 Sum_probs=67.6
Q ss_pred chHHHHHHHHHHcCC----CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCC
Q 043056 158 SRMFTLRNILSALED----PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLK 233 (559)
Q Consensus 158 gR~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 233 (559)
+|........+++.. ...+-+.++|+.|+|||.||..+++....+ .+ .+.++++ ..++.++.......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~-g~-~v~~~~~------~~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK-GV-SSTLLHF------PEFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CC-CEEEEEH------HHHHHHHHHHHhcC
Confidence 454455555555541 234679999999999999999999998643 23 3455554 34555555444211
Q ss_pred CcCCChhhhHHHHHHHHHcCCeEEEEEeCCCc--ccccch--hcCCCCC-C-CCCcEEEEEecC
Q 043056 234 FHEESESGRANSLFKRIKAEKKILIILDNIWE--NLDLRV--VGIPHGD-G-HKDCKVLLTARS 291 (559)
Q Consensus 234 ~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~--~~~~~~--l~~~~~~-~-~~gs~IivTTR~ 291 (559)
......+.+. +-=||||||+-. ...|.. +...+.. . ..+-.+|+||.-
T Consensus 207 --------~~~~~l~~l~--~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 207 --------SVKEKIDAVK--EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred --------cHHHHHHHhc--CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1233444443 467999999953 345642 3332211 1 134457778763
No 173
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.01 E-value=0.0032 Score=71.56 Aligned_cols=106 Identities=17% Similarity=0.234 Sum_probs=59.8
Q ss_pred CCccchHHHHHHHHHHcCC-------C--CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHH
Q 043056 154 LPFESRMFTLRNILSALED-------P--DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQG 224 (559)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 224 (559)
..++|.+..++.+...+.. + ...++.++|++|+|||++|+.+....... -...+.++++.......
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccch---
Confidence 3477888888887777641 1 23578899999999999999999876432 22344555554322111
Q ss_pred HHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcc
Q 043056 225 EIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWEN 266 (559)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 266 (559)
+.+-+|.+.. --..+....+.+.+......+|+||++...
T Consensus 640 -~~~l~g~~~g-~~g~~~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 640 -VARLIGAPPG-YVGYEEGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred -HHHhcCCCCC-ccCcccccHHHHHHHcCCCcEEEEeccccC
Confidence 1111222211 001111123444444334459999999754
No 174
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.98 E-value=0.0022 Score=68.17 Aligned_cols=76 Identities=21% Similarity=0.355 Sum_probs=55.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHc
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKA 252 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 252 (559)
+..++..++|++|.||||||..++.+.. | .++=|++|...+...+-..|...+....... ..
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l~-------------ad 385 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSVLD-------------AD 385 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhccccc-------------cC
Confidence 3468999999999999999999998765 3 3677888988888777666665543221110 12
Q ss_pred CCeEEEEEeCCCcc
Q 043056 253 EKKILIILDNIWEN 266 (559)
Q Consensus 253 ~kr~LlVlDdv~~~ 266 (559)
.++..||+|.++..
T Consensus 386 srP~CLViDEIDGa 399 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGA 399 (877)
T ss_pred CCcceEEEecccCC
Confidence 57889999999754
No 175
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.023 Score=59.53 Aligned_cols=94 Identities=20% Similarity=0.266 Sum_probs=60.7
Q ss_pred CCCccchHHHHHHHHHHcC---C---------CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHH
Q 043056 153 YLPFESRMFTLRNILSALE---D---------PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIR 220 (559)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~---~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 220 (559)
...+-|-+..+.+|.+.+. . ..++=|.+|||+|.|||.||+.+++...+- | +.++..
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP--f-----~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP--F-----LSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc--e-----Eeecch----
Confidence 3445577777777666543 1 245678899999999999999999988764 2 333221
Q ss_pred HHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcc
Q 043056 221 KLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWEN 266 (559)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 266 (559)
+|+.... ....+.+..++..-...-++++++|+++-.
T Consensus 258 ----eivSGvS-----GESEkkiRelF~~A~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 258 ----EIVSGVS-----GESEKKIRELFDQAKSNAPCIVFIDEIDAI 294 (802)
T ss_pred ----hhhcccC-----cccHHHHHHHHHHHhccCCeEEEeeccccc
Confidence 1221111 112234556666666678999999999643
No 176
>PRK09183 transposase/IS protein; Provisional
Probab=96.96 E-value=0.0021 Score=62.29 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
..+.|+|++|+|||+||..+......
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999877544
No 177
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.96 E-value=0.0011 Score=66.17 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=40.8
Q ss_pred CccchHHHHHHHHHHcC------CCCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 155 PFESRMFTLRNILSALE------DPDVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 155 ~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
.++|-++.++++++++. ....+++.++|++|+||||||..+.+....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 58899999999999885 234689999999999999999999998764
No 178
>PRK12377 putative replication protein; Provisional
Probab=96.94 E-value=0.0048 Score=59.06 Aligned_cols=73 Identities=19% Similarity=0.286 Sum_probs=47.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCC
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEK 254 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 254 (559)
...+.++|++|+|||+||..+++....+ ...++++++ .+++..|-...... .....+.+.+. +
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~------~~l~~~l~~~~~~~-------~~~~~~l~~l~--~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTV------PDVMSRLHESYDNG-------QSGEKFLQELC--K 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEH------HHHHHHHHHHHhcc-------chHHHHHHHhc--C
Confidence 4678999999999999999999998754 334566654 34555554433210 11223445543 4
Q ss_pred eEEEEEeCCC
Q 043056 255 KILIILDNIW 264 (559)
Q Consensus 255 r~LlVlDdv~ 264 (559)
--||||||+.
T Consensus 164 ~dLLiIDDlg 173 (248)
T PRK12377 164 VDLLVLDEIG 173 (248)
T ss_pred CCEEEEcCCC
Confidence 6799999994
No 179
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.02 Score=59.93 Aligned_cols=132 Identities=20% Similarity=0.324 Sum_probs=82.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcC
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAE 253 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (559)
.+.=|.+|||+|.|||-||+.|+|..+.+ |+++... +++.... | .....+..++++-...
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~N-------FisVKGP----ELlNkYV---G------ESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGAN-------FISVKGP----ELLNKYV---G------ESERAVRQVFQRARAS 603 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccCc-------eEeecCH----HHHHHHh---h------hHHHHHHHHHHHhhcC
Confidence 35568899999999999999999987755 4554432 1111111 1 1122345566666667
Q ss_pred CeEEEEEeCCCccc-------c------cchhcCCCC--CCCCCcEEEEEecCcchhc-cCCCC---CCeeecCCCCHHH
Q 043056 254 KKILIILDNIWENL-------D------LRVVGIPHG--DGHKDCKVLLTARSLDVLS-GKMDS---RPNFSIGVLNEEE 314 (559)
Q Consensus 254 kr~LlVlDdv~~~~-------~------~~~l~~~~~--~~~~gs~IivTTR~~~va~-~~~~~---~~~~~l~~L~~~e 314 (559)
-+|+|+||.++... . ..+++.-+. ....|.-||-.|...++.. ..... ...+.++.=+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 89999999996431 1 223332222 1335666777776665541 12222 3577778888899
Q ss_pred HHHHHHHHhCC
Q 043056 315 AWNLFKKMAGD 325 (559)
Q Consensus 315 a~~Lf~~~~~~ 325 (559)
-..+++....+
T Consensus 684 R~~ILK~~tkn 694 (802)
T KOG0733|consen 684 RVAILKTITKN 694 (802)
T ss_pred HHHHHHHHhcc
Confidence 99999988873
No 180
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.91 E-value=0.013 Score=58.55 Aligned_cols=155 Identities=15% Similarity=0.110 Sum_probs=79.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccc---------------------CCCCeEEEEEeCCCcCHHHHHHHHHHHhCC
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSD---------------------KLFDQVVFVEVSQNQDIRKLQGEIADKLGL 232 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---------------------~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 232 (559)
-...+.++|+.|+||||+|..+....--. .|.|.+ ++........ -+
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~-~~~p~~~~~~----------~g- 87 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFY-EITPLSDEPE----------NG- 87 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEE-EEeccccccc----------cc-
Confidence 34578899999999999999998875311 112211 1111000000 00
Q ss_pred CCcCCChhhhHHHHHHHHH----cCCeEEEEEeCCCccc--ccchhcCCCCCCCCCcEEEEEecCcc-hhccCCCCCCee
Q 043056 233 KFHEESESGRANSLFKRIK----AEKKILIILDNIWENL--DLRVVGIPHGDGHKDCKVLLTARSLD-VLSGKMDSRPNF 305 (559)
Q Consensus 233 ~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~~-va~~~~~~~~~~ 305 (559)
.....-..+.+..+.+.+. .+++-++|+|++...+ .-..+...+.....++.+|++|.+.. +..........+
T Consensus 88 ~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~ 167 (325)
T PRK08699 88 RKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKM 167 (325)
T ss_pred ccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhh
Confidence 0000011233344444442 1344455667776442 22222222222223466777776643 433333445689
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHH
Q 043056 306 SIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVS 349 (559)
Q Consensus 306 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa 349 (559)
.+.+++.+++.+.+... + . ... ...+..++|.|+.
T Consensus 168 ~~~~~~~~~~~~~L~~~-~--~-~~~-----~~~l~~~~g~p~~ 202 (325)
T PRK08699 168 VLPAPSHEEALAYLRER-G--V-AEP-----EERLAFHSGAPLF 202 (325)
T ss_pred cCCCCCHHHHHHHHHhc-C--C-CcH-----HHHHHHhCCChhh
Confidence 99999999999888664 1 1 111 1123568999964
No 181
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.87 E-value=0.0058 Score=61.80 Aligned_cols=88 Identities=16% Similarity=0.260 Sum_probs=55.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCC-CcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcC
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQ-NQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAE 253 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (559)
-.++.++|+.|+||||++..+......+.....+..++... .....+-++...+.++.+................+. +
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~-~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR-N 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc-C
Confidence 46899999999999999999998764331123456665433 234456666667777765543333333334444443 3
Q ss_pred CeEEEEEeCCC
Q 043056 254 KKILIILDNIW 264 (559)
Q Consensus 254 kr~LlVlDdv~ 264 (559)
+-++++|..-
T Consensus 216 -~DlVLIDTaG 225 (374)
T PRK14722 216 -KHMVLIDTIG 225 (374)
T ss_pred -CCEEEEcCCC
Confidence 4566789873
No 182
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.032 Score=59.51 Aligned_cols=157 Identities=19% Similarity=0.176 Sum_probs=91.6
Q ss_pred CCCccchHHHHHHHHHHcC------CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHH
Q 043056 153 YLPFESRMFTLRNILSALE------DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEI 226 (559)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 226 (559)
....+|-++..+++++.+. +-+-++++.+||+|+|||++|+.++.....+ | +-++++.-.|..++-..=
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk--F---fRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK--F---FRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc--e---EEEeccccccHHhhcccc
Confidence 4567888999999998875 3355799999999999999999999987654 3 334666655554431110
Q ss_pred HHHhCCCCcCCChhhhHHHHHHHHHc--CCeEEEEEeCCCccc---------ccchhcCC-----CCC-----CCCCcEE
Q 043056 227 ADKLGLKFHEESESGRANSLFKRIKA--EKKILIILDNIWENL---------DLRVVGIP-----HGD-----GHKDCKV 285 (559)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~l~~--~kr~LlVlDdv~~~~---------~~~~l~~~-----~~~-----~~~gs~I 285 (559)
- ....... .++.+.|+. -.+=|+.||.|+... .+-.+..| |.+ .--=|+|
T Consensus 485 R------TYVGAMP---GkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 485 R------TYVGAMP---GKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred e------eeeccCC---hHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhhe
Confidence 0 0000111 133344432 234588889886431 11111111 000 0012455
Q ss_pred EE--EecC-cchhccCCCCCCeeecCCCCHHHHHHHHHHHh
Q 043056 286 LL--TARS-LDVLSGKMDSRPNFSIGVLNEEEAWNLFKKMA 323 (559)
Q Consensus 286 iv--TTR~-~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 323 (559)
++ |... ..+.....+....|+|.+...+|=.++-.+++
T Consensus 556 LFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 43 3332 22223345667799999999999888877765
No 183
>PRK06696 uridine kinase; Validated
Probab=96.86 E-value=0.0016 Score=61.78 Aligned_cols=44 Identities=25% Similarity=0.328 Sum_probs=35.5
Q ss_pred chHHHHHHHHHHcC---CCCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 158 SRMFTLRNILSALE---DPDVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 158 gR~~~~~~l~~~L~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
.|...+++|.+.+. .+.+.+|+|.|.+|+||||||+.+......
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35666777776663 456789999999999999999999988754
No 184
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.82 E-value=0.0066 Score=59.62 Aligned_cols=88 Identities=17% Similarity=0.286 Sum_probs=50.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQ-DIRKLQGEIADKLGLKFHEESESGRANSLFKRIKA 252 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 252 (559)
..+++.++|++|+||||++..++.....+..-..+..++..... ...+.+....+.++.+.........+....+.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~- 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR- 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc-
Confidence 45799999999999999999998876543111245666654321 2233334444555554433333333344444443
Q ss_pred CCeEEEEEeCC
Q 043056 253 EKKILIILDNI 263 (559)
Q Consensus 253 ~kr~LlVlDdv 263 (559)
+ .=+|++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 2 347777753
No 185
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.81 E-value=0.036 Score=52.55 Aligned_cols=207 Identities=13% Similarity=0.142 Sum_probs=114.7
Q ss_pred CCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccC----CCCeEEEEEeCCC----------c-
Q 043056 153 YLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDK----LFDQVVFVEVSQN----------Q- 217 (559)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~----------~- 217 (559)
...+.++++.-..+......++.+-..++||+|.||-|.+..+.+..-..+ .-+...|.+.+.. +
T Consensus 12 l~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yH 91 (351)
T KOG2035|consen 12 LDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYH 91 (351)
T ss_pred hhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccce
Confidence 344666777777777666567788999999999999999888887643211 1234455544432 1
Q ss_pred ----------CHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeE-EEEEeCCCcc--cccchhcCCCCCCCCCcE
Q 043056 218 ----------DIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKI-LIILDNIWEN--LDLRVVGIPHGDGHKDCK 284 (559)
Q Consensus 218 ----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~-LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ 284 (559)
.-+-+.++|++......+-+ ....+.| ++|+-.+++. +.-..+......-...+|
T Consensus 92 lEitPSDaG~~DRvViQellKevAQt~qie------------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~R 159 (351)
T KOG2035|consen 92 LEITPSDAGNYDRVVIQELLKEVAQTQQIE------------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCR 159 (351)
T ss_pred EEeChhhcCcccHHHHHHHHHHHHhhcchh------------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCce
Confidence 11223344443332111100 0113445 4455555432 112222222222234567
Q ss_pred EEEEecCcc-hhccCCCCCCeeecCCCCHHHHHHHHHHHhCCC-CCCcchHHHHHHHHHHhCCChHHHHHHHHHHh--cC
Q 043056 285 VLLTARSLD-VLSGKMDSRPNFSIGVLNEEEAWNLFKKMAGDY-IEGSEFQSVARDVAKECAGLPVSVVTIARALR--NK 360 (559)
Q Consensus 285 IivTTR~~~-va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~-~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~--~~ 360 (559)
+|+...+-. +........-.+++...+++|....+++.+... ..-| .+++++|+++++|+---...+...++ +.
T Consensus 160 lIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~ 237 (351)
T KOG2035|consen 160 LILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNE 237 (351)
T ss_pred EEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhccc
Confidence 666443321 111112233478899999999999999887532 2223 67899999999998654444444444 11
Q ss_pred ---------ChHHHHHHHHHhc
Q 043056 361 ---------RLFEWKDALEQLR 373 (559)
Q Consensus 361 ---------~~~~w~~~l~~l~ 373 (559)
+.-+|+-+..+..
T Consensus 238 ~~~a~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 238 PFTANSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred cccccCCCCCCccHHHHHHHHH
Confidence 3457887776643
No 186
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.80 E-value=0.0061 Score=60.37 Aligned_cols=84 Identities=20% Similarity=0.313 Sum_probs=53.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcC-----CChhhhHHHHHH
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHE-----ESESGRANSLFK 248 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~ 248 (559)
.-+++-|+|++|+||||||.++....... -..++|++..+.++.. .++.++.+.+. ....+....+..
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 34689999999999999999988765433 3457899887766543 35555543221 111222222333
Q ss_pred H-HHcCCeEEEEEeCCC
Q 043056 249 R-IKAEKKILIILDNIW 264 (559)
Q Consensus 249 ~-l~~~kr~LlVlDdv~ 264 (559)
. +..+..-++|+|.+.
T Consensus 127 ~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHhhccCCcEEEEcchh
Confidence 3 334567799999985
No 187
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.79 E-value=0.069 Score=55.53 Aligned_cols=86 Identities=23% Similarity=0.342 Sum_probs=50.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCC-CcCHHHHHHHHHHHhCCCCcCCC----hhhhHHHHHH
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQ-NQDIRKLQGEIADKLGLKFHEES----ESGRANSLFK 248 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~----~~~~~~~l~~ 248 (559)
.+.+|.++|++|+||||++..++.....++ + .+..++... .+...+.++.+...++.+..... ....+....+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g-~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKG-L-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcC-C-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 467999999999999999999998876542 2 344454432 22334556666777765433221 1122223333
Q ss_pred HHHcCCeEEEEEeCC
Q 043056 249 RIKAEKKILIILDNI 263 (559)
Q Consensus 249 ~l~~~kr~LlVlDdv 263 (559)
.+. +. -++|+|..
T Consensus 172 ~~~-~~-DvVIIDTA 184 (437)
T PRK00771 172 KFK-KA-DVIIVDTA 184 (437)
T ss_pred Hhh-cC-CEEEEECC
Confidence 333 22 56777776
No 188
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.79 E-value=0.011 Score=64.97 Aligned_cols=149 Identities=19% Similarity=0.272 Sum_probs=80.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCe
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKK 255 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 255 (559)
+-|.++|++|+|||++|+.+....... | +.++.+. +.. +. .+ . .......+........+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~--f---~~is~~~------~~~-~~--~g-----~-~~~~~~~~f~~a~~~~P 245 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVP--F---FTISGSD------FVE-MF--VG-----V-GASRVRDMFEQAKKAAP 245 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCC--E---EEEehHH------hHH-hh--hc-----c-cHHHHHHHHHHHHhcCC
Confidence 459999999999999999998876532 2 2222221 110 00 00 0 11122333444444578
Q ss_pred EEEEEeCCCccc------------c----cchhcCCCC--CCCCCcEEEEEecCcchhcc-CC---CCCCeeecCCCCHH
Q 043056 256 ILIILDNIWENL------------D----LRVVGIPHG--DGHKDCKVLLTARSLDVLSG-KM---DSRPNFSIGVLNEE 313 (559)
Q Consensus 256 ~LlVlDdv~~~~------------~----~~~l~~~~~--~~~~gs~IivTTR~~~va~~-~~---~~~~~~~l~~L~~~ 313 (559)
++|++|+++... . ...+...+. ....+.-||.||...+.... .. .....+.+..-+.+
T Consensus 246 ~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHH
Confidence 999999986531 0 111211111 12334556667776543311 11 23467888888888
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCC
Q 043056 314 EAWNLFKKMAGDYIEGSEFQSVARDVAKECAGL 346 (559)
Q Consensus 314 ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl 346 (559)
+-.++++.+.......++.. ...+++.+.|.
T Consensus 326 ~R~~Il~~~~~~~~l~~~~d--~~~la~~t~G~ 356 (644)
T PRK10733 326 GREQILKVHMRRVPLAPDID--AAIIARGTPGF 356 (644)
T ss_pred HHHHHHHHHhhcCCCCCcCC--HHHHHhhCCCC
Confidence 88889888876432222111 23466666663
No 189
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.03 Score=59.32 Aligned_cols=153 Identities=18% Similarity=0.239 Sum_probs=81.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHc
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKA 252 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 252 (559)
..++-|..+||+|.|||++|+.+++..... | +.++.. +++.. +.++ ....+..++..-.+
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~n--F-----lsvkgp--------EL~sk----~vGe-SEr~ir~iF~kAR~ 525 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMN--F-----LSVKGP--------ELFSK----YVGE-SERAIREVFRKARQ 525 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCC--e-----eeccCH--------HHHHH----hcCc-hHHHHHHHHHHHhh
Confidence 456789999999999999999999987654 3 333321 11111 1111 11233344444444
Q ss_pred CCeEEEEEeCCCcccc-------------cchhcCCCCCCC--CCcEEEEEecCcchh-ccCCC---CCCeeecCCCCHH
Q 043056 253 EKKILIILDNIWENLD-------------LRVVGIPHGDGH--KDCKVLLTARSLDVL-SGKMD---SRPNFSIGVLNEE 313 (559)
Q Consensus 253 ~kr~LlVlDdv~~~~~-------------~~~l~~~~~~~~--~gs~IivTTR~~~va-~~~~~---~~~~~~l~~L~~~ 313 (559)
--++++.||.++.... +..+...+.... ++.-||-.|...+.. ...+. -...+.+++=+.+
T Consensus 526 ~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~ 605 (693)
T KOG0730|consen 526 VAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLE 605 (693)
T ss_pred cCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHH
Confidence 5678999998864311 112222221111 223334334333322 22333 3457888888888
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 043056 314 EAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLP 347 (559)
Q Consensus 314 ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (559)
.-.++|+.++..-.-.++ . -..+|++++.|.-
T Consensus 606 aR~~Ilk~~~kkmp~~~~-v-dl~~La~~T~g~S 637 (693)
T KOG0730|consen 606 ARLEILKQCAKKMPFSED-V-DLEELAQATEGYS 637 (693)
T ss_pred HHHHHHHHHHhcCCCCcc-c-cHHHHHHHhccCC
Confidence 888999998864332222 1 1344555555543
No 190
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.74 E-value=0.012 Score=56.26 Aligned_cols=89 Identities=17% Similarity=0.298 Sum_probs=53.2
Q ss_pred HHHHHHHHcCC--CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCCh
Q 043056 162 TLRNILSALED--PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESE 239 (559)
Q Consensus 162 ~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~ 239 (559)
.+..+.+...+ .....+.++|.+|+|||+||..+++....+ -..+++++ ..+++..+-.... . ..
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it------~~~l~~~l~~~~~-~-~~--- 150 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIIT------VADIMSAMKDTFS-N-SE--- 150 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE------HHHHHHHHHHHHh-h-cc---
Confidence 44444444432 223578999999999999999999987654 23456664 4455555444332 0 01
Q ss_pred hhhHHHHHHHHHcCCeEEEEEeCCCcc
Q 043056 240 SGRANSLFKRIKAEKKILIILDNIWEN 266 (559)
Q Consensus 240 ~~~~~~l~~~l~~~kr~LlVlDdv~~~ 266 (559)
.....+.+.+. +.=+|||||+...
T Consensus 151 -~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 151 -TSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred -ccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 11223445554 3458999999543
No 191
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.73 E-value=0.0069 Score=55.03 Aligned_cols=73 Identities=32% Similarity=0.470 Sum_probs=44.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCC
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEK 254 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 254 (559)
..-+.++|+.|+|||.||..+.+....++ + .+.|++ ..+++..+-. .... .....+.+.+. +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g-~-~v~f~~------~~~L~~~l~~----~~~~----~~~~~~~~~l~--~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKG-Y-SVLFIT------ASDLLDELKQ----SRSD----GSYEELLKRLK--R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEE------HHHHHHHHHC----CHCC----TTHCHHHHHHH--T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCC-c-ceeEee------cCceeccccc----cccc----cchhhhcCccc--c
Confidence 45699999999999999999998876532 2 355664 3445444432 1111 12234455555 3
Q ss_pred eEEEEEeCCCc
Q 043056 255 KILIILDNIWE 265 (559)
Q Consensus 255 r~LlVlDdv~~ 265 (559)
-=||||||+-.
T Consensus 109 ~dlLilDDlG~ 119 (178)
T PF01695_consen 109 VDLLILDDLGY 119 (178)
T ss_dssp SSCEEEETCTS
T ss_pred ccEecccccce
Confidence 46888999954
No 192
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.72 E-value=0.011 Score=56.21 Aligned_cols=49 Identities=24% Similarity=0.317 Sum_probs=36.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccC----CCCeEEEEEeCCCcCHHHH
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDK----LFDQVVFVEVSQNQDIRKL 222 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~ 222 (559)
.-.++.|+|++|+|||+|+.+++....... .-..++|++....++...+
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl 70 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERL 70 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHH
Confidence 346899999999999999999987643221 0146889998877766544
No 193
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.026 Score=53.96 Aligned_cols=171 Identities=22% Similarity=0.240 Sum_probs=92.9
Q ss_pred CccchHHHHHHHHHHcC---------C---CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHH
Q 043056 155 PFESRMFTLRNILSALE---------D---PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKL 222 (559)
Q Consensus 155 ~~~gR~~~~~~l~~~L~---------~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~ 222 (559)
.+.|-+...+.|.+.+. . ..-+-|.++||+|.||+.||+.|+..... .|.++|... +
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS-------TFFSvSSSD----L 202 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS-------TFFSVSSSD----L 202 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC-------ceEEeehHH----H
Confidence 35566666666666543 1 23567999999999999999999987652 234454431 1
Q ss_pred HHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc------c---cchhc-------CCCCCCCCCcEEE
Q 043056 223 QGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL------D---LRVVG-------IPHGDGHKDCKVL 286 (559)
Q Consensus 223 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~------~---~~~l~-------~~~~~~~~gs~Ii 286 (559)
.. +.+|. ...++..+++-..+.|+-+|++|.+++.. + -..+. .-......|.-|+
T Consensus 203 vS---KWmGE------SEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVL 273 (439)
T KOG0739|consen 203 VS---KWMGE------SEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVL 273 (439)
T ss_pred HH---HHhcc------HHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEE
Confidence 11 12221 12345556666667899999999996431 1 11111 1122334455666
Q ss_pred EEecCcchhccCC--CCCCeeecCCCCHHHHH-HHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 043056 287 LTARSLDVLSGKM--DSRPNFSIGVLNEEEAW-NLFKKMAGDYIEGSEFQSVARDVAKECAGLP 347 (559)
Q Consensus 287 vTTR~~~va~~~~--~~~~~~~l~~L~~~ea~-~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (559)
-.|...-++.... .....|.+ ||.+..|. ..|+-++|+... .-.+.-.+++.++..|..
T Consensus 274 gATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp~-~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 274 GATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTPH-VLTEQDFKELARKTEGYS 335 (439)
T ss_pred ecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCcc-ccchhhHHHHHhhcCCCC
Confidence 6776655442111 11223333 45555554 456666663322 112333566777777754
No 194
>PRK09354 recA recombinase A; Provisional
Probab=96.71 E-value=0.0079 Score=60.15 Aligned_cols=84 Identities=21% Similarity=0.313 Sum_probs=54.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcC-----CChhhhHHHHHH
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHE-----ESESGRANSLFK 248 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~ 248 (559)
.-+++-|+|++|+|||||+.+++...... -..++|++....++.. .++.++.+.+. ....+....+..
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 34689999999999999999988765433 3568899988877752 45555543221 111222223333
Q ss_pred HH-HcCCeEEEEEeCCC
Q 043056 249 RI-KAEKKILIILDNIW 264 (559)
Q Consensus 249 ~l-~~~kr~LlVlDdv~ 264 (559)
.+ ..++.-++|+|.+-
T Consensus 132 ~li~s~~~~lIVIDSva 148 (349)
T PRK09354 132 TLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHhhcCCCCEEEEeChh
Confidence 33 34567799999985
No 195
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.70 E-value=0.0077 Score=59.73 Aligned_cols=84 Identities=23% Similarity=0.322 Sum_probs=53.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcC-----CChhhhHHHHHH
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHE-----ESESGRANSLFK 248 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~ 248 (559)
.-+++-|+|++|+||||||.+++...... -..++|++....++.. .++.++.+.+. ....+.+..+.+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 34688999999999999999988765433 3468899887776653 34455443211 111222223333
Q ss_pred HH-HcCCeEEEEEeCCC
Q 043056 249 RI-KAEKKILIILDNIW 264 (559)
Q Consensus 249 ~l-~~~kr~LlVlDdv~ 264 (559)
.+ ..+..-++|+|.+.
T Consensus 127 ~li~s~~~~lIVIDSva 143 (325)
T cd00983 127 SLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHhccCCCEEEEcchH
Confidence 33 34566799999974
No 196
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.70 E-value=0.011 Score=52.43 Aligned_cols=40 Identities=28% Similarity=0.525 Sum_probs=31.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcC
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQD 218 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 218 (559)
++.|+|++|+||||++..+....... -..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK--GGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc--CCEEEEEECCcchH
Confidence 36899999999999999998877542 35678887765543
No 197
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0026 Score=69.46 Aligned_cols=160 Identities=13% Similarity=0.166 Sum_probs=94.6
Q ss_pred CCCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCC----eEEE-EEeCCCcCHHHHHHH
Q 043056 151 KDYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFD----QVVF-VEVSQNQDIRKLQGE 225 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~----~~~w-v~~s~~~~~~~~~~~ 225 (559)
....+++||++|++++++.|......--.++|.+|+|||+++.-++.+.-..+-.. ..++ +.
T Consensus 167 gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD------------- 233 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD------------- 233 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec-------------
Confidence 34677999999999999999732222235789999999999999999865543221 1111 11
Q ss_pred HHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc--------ccch--hcCCCCCCCCCcEEEEEecCcch-
Q 043056 226 IADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL--------DLRV--VGIPHGDGHKDCKVLLTARSLDV- 294 (559)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--------~~~~--l~~~~~~~~~gs~IivTTR~~~v- 294 (559)
+..-.........-.+.+..+.+.+.+.++..|++|.++..- ..+. +..|-...+.--.|=.||-++.-
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk 313 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRK 313 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHH
Confidence 111111111222334566677777776669999999986431 1221 22222122222235566654321
Q ss_pred -h---ccCCCCCCeeecCCCCHHHHHHHHHHHh
Q 043056 295 -L---SGKMDSRPNFSIGVLNEEEAWNLFKKMA 323 (559)
Q Consensus 295 -a---~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 323 (559)
. .........+.++.-+.+++..+++...
T Consensus 314 ~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 314 YIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 0 1122445688899999999998887544
No 198
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.69 E-value=0.065 Score=52.32 Aligned_cols=171 Identities=17% Similarity=0.204 Sum_probs=99.0
Q ss_pred CCCCccchHHHHHHHHHHcC----CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCH-HHHHHHH
Q 043056 152 DYLPFESRMFTLRNILSALE----DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDI-RKLQGEI 226 (559)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~-~~~~~~i 226 (559)
+...++|-.++-.++-.++. .++...+.|+||.|+|||+|......+... .=...+-|...+..-. .-.++.|
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~--~~E~~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQE--NGENFLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHh--cCCeEEEEEECccchhhHHHHHHH
Confidence 34457888887777777765 355567889999999999999888877221 1123344444443322 2345666
Q ss_pred HHHhCCCCc-----CCChhhhHHHHHHHHHc-----CCeEEEEEeCCCcccc-------cchhcCCCCCCCCCcEEEEEe
Q 043056 227 ADKLGLKFH-----EESESGRANSLFKRIKA-----EKKILIILDNIWENLD-------LRVVGIPHGDGHKDCKVLLTA 289 (559)
Q Consensus 227 ~~~l~~~~~-----~~~~~~~~~~l~~~l~~-----~kr~LlVlDdv~~~~~-------~~~l~~~~~~~~~gs~IivTT 289 (559)
.+++..... ..+-.+....+...|.. +-+++.|+|.++--.. +.-+-..-....+=|-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 666543221 12233445666666653 3457888887753211 111111111233456677899
Q ss_pred cCcchh------ccCCCCCCeeecCCCCHHHHHHHHHHHhC
Q 043056 290 RSLDVL------SGKMDSRPNFSIGVLNEEEAWNLFKKMAG 324 (559)
Q Consensus 290 R~~~va------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 324 (559)
|-.-.- ........++.+++++-++...+++....
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 853211 11122333667788999999999998874
No 199
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.68 E-value=0.0051 Score=68.29 Aligned_cols=102 Identities=13% Similarity=0.179 Sum_probs=56.5
Q ss_pred CccchHHHHHHHHHHcC-------C--CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHH
Q 043056 155 PFESRMFTLRNILSALE-------D--PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGE 225 (559)
Q Consensus 155 ~~~gR~~~~~~l~~~L~-------~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 225 (559)
.++|-+..++.+...+. + .....+.++|++|+|||++|+.++..... ..+.++++...... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~-----~~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC-----CcEEeechhhcccc----c
Confidence 35677777777776654 1 12457899999999999999999887632 23344444322111 1
Q ss_pred HHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcc
Q 043056 226 IADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWEN 266 (559)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 266 (559)
+.+-+|.+..-.. ......+.+.+......+|+||+++..
T Consensus 530 ~~~LiG~~~gyvg-~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 530 VSRLIGAPPGYVG-FDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred HHHHcCCCCCccc-ccccchHHHHHHhCCCcEEEeccHhhh
Confidence 2222232211000 111122333444344579999999754
No 200
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.67 E-value=0.012 Score=55.96 Aligned_cols=31 Identities=32% Similarity=0.458 Sum_probs=27.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 043056 172 DPDVNMLGIYGMGGIGKTMLAEEVARKVKSD 202 (559)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (559)
.++..+++|.|++|+|||||++.+.......
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 3567899999999999999999999887654
No 201
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.65 E-value=0.0051 Score=55.88 Aligned_cols=36 Identities=25% Similarity=0.543 Sum_probs=29.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEE
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFV 211 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 211 (559)
...+|.+.|+.|+||||+|+.++...... +...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~--~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLK--YSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEE
Confidence 45689999999999999999999988643 5455555
No 202
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.65 E-value=0.009 Score=59.40 Aligned_cols=58 Identities=16% Similarity=0.319 Sum_probs=42.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccc----CCCCeEEEEEeCCCcCHHHHHHHHHHHhCCC
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSD----KLFDQVVFVEVSQNQDIRKLQGEIADKLGLK 233 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 233 (559)
-.++-|+|++|+|||+|+.+++-..... ..=..++|++....++...+. ++++.++.+
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d 157 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVD 157 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCC
Confidence 4688899999999999999877543211 112468999999988888764 456666654
No 203
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.60 E-value=0.14 Score=52.99 Aligned_cols=38 Identities=24% Similarity=0.334 Sum_probs=28.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEe
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEV 213 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 213 (559)
.+.+|.++|+.|+||||++..++.....++ + .+..|+.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G-~-kV~lV~~ 136 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKG-F-KPCLVCA 136 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC-C-CEEEEcC
Confidence 468999999999999999999987765432 2 3444443
No 204
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.56 E-value=0.0097 Score=56.45 Aligned_cols=45 Identities=20% Similarity=0.375 Sum_probs=35.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKL 222 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~ 222 (559)
-.++.|+|++|+|||+++.+++...... -..++|++.. .++...+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHH
Confidence 4689999999999999999998876533 4568899887 5554443
No 205
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.55 E-value=0.024 Score=57.34 Aligned_cols=88 Identities=17% Similarity=0.308 Sum_probs=49.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQ-DIRKLQGEIADKLGLKFHEESESGRANSLFKRIKA 252 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 252 (559)
..++|+++|++|+||||++..++.....++ + .+..++..... ...+-++...+.++.+.........+...+..+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~G-k-kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK-K-TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcC-C-cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 457999999999999999999988765332 2 34455543321 23333444445555543322223333344444432
Q ss_pred C-CeEEEEEeCC
Q 043056 253 E-KKILIILDNI 263 (559)
Q Consensus 253 ~-kr~LlVlDdv 263 (559)
. +.=++++|-.
T Consensus 318 ~~~~DvVLIDTa 329 (436)
T PRK11889 318 EARVDYILIDTA 329 (436)
T ss_pred ccCCCEEEEeCc
Confidence 1 2346677766
No 206
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.54 E-value=0.0057 Score=54.63 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
.-..+.|+|++|.|||||.+.+|...+.
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~p 54 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERP 54 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcC
Confidence 3467999999999999999999998764
No 207
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.54 E-value=0.021 Score=55.10 Aligned_cols=89 Identities=21% Similarity=0.371 Sum_probs=55.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCCC-------CcCCChhh------
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQ-DIRKLQGEIADKLGLK-------FHEESESG------ 241 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~------ 241 (559)
..++|.|.+|+|||||++.+++....+ +-+.++++-+++.. .+.++..++...-... ..+.+...
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~-~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~ 148 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKA-HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVAL 148 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 468999999999999999999987754 22456677776654 4455655555432111 11111111
Q ss_pred hHHHHHHHHH-c-CCeEEEEEeCCCc
Q 043056 242 RANSLFKRIK-A-EKKILIILDNIWE 265 (559)
Q Consensus 242 ~~~~l~~~l~-~-~kr~LlVlDdv~~ 265 (559)
..-.+-+.+. + ++.+|+++||+-.
T Consensus 149 ~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 149 TGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 1223344442 3 8999999999843
No 208
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.53 E-value=0.017 Score=55.86 Aligned_cols=89 Identities=29% Similarity=0.350 Sum_probs=54.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccc----CCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcC----------CChh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSD----KLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHE----------ESES 240 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----------~~~~ 240 (559)
-.+.=|+|++|+|||.|+.+++-..... ..-..++|++-...++...+. +|++..+.+... .+..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 3588999999999999999987654321 112469999999999887774 566665432110 0111
Q ss_pred ---hhHHHHHHHHHcCCeEEEEEeCCC
Q 043056 241 ---GRANSLFKRIKAEKKILIILDNIW 264 (559)
Q Consensus 241 ---~~~~~l~~~l~~~kr~LlVlDdv~ 264 (559)
..+..+...+.+.+--|||+|.+-
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHhhccccceEEEEecchH
Confidence 112223333334556688888873
No 209
>PRK06921 hypothetical protein; Provisional
Probab=96.50 E-value=0.013 Score=56.97 Aligned_cols=72 Identities=22% Similarity=0.372 Sum_probs=45.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcC
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAE 253 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (559)
....+.++|+.|+|||.||..+++....+. -..++|++. .+++..+...+ .......+.+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~------~~l~~~l~~~~----------~~~~~~~~~~~-- 176 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF------VEGFGDLKDDF----------DLLEAKLNRMK-- 176 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH------HHHHHHHHHHH----------HHHHHHHHHhc--
Confidence 356799999999999999999999876431 234566664 23333332221 11122333433
Q ss_pred CeEEEEEeCCC
Q 043056 254 KKILIILDNIW 264 (559)
Q Consensus 254 kr~LlVlDdv~ 264 (559)
+-=||||||+.
T Consensus 177 ~~dlLiIDDl~ 187 (266)
T PRK06921 177 KVEVLFIDDLF 187 (266)
T ss_pred CCCEEEEeccc
Confidence 35699999993
No 210
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.50 E-value=0.016 Score=58.18 Aligned_cols=58 Identities=17% Similarity=0.230 Sum_probs=42.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcc---cC-CCCeEEEEEeCCCcCHHHHHHHHHHHhCCC
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKS---DK-LFDQVVFVEVSQNQDIRKLQGEIADKLGLK 233 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~-~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 233 (559)
-.+.-|+|++|+|||+|+.+++-.... .. .-..++|++....++...+.+ +++.++.+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 467889999999999999998744321 11 124689999999999888644 56666654
No 211
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.48 E-value=0.004 Score=53.99 Aligned_cols=46 Identities=26% Similarity=0.390 Sum_probs=36.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCC
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKF 234 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 234 (559)
.+|.|.|++|+||||+|+.+.++..-. . .+.-.++++|++..|.+.
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~----~---------vsaG~iFR~~A~e~gmsl 46 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLK----L---------VSAGTIFREMARERGMSL 46 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCc----e---------eeccHHHHHHHHHcCCCH
Confidence 378999999999999999999987643 1 133467889998888764
No 212
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.46 E-value=0.12 Score=51.09 Aligned_cols=166 Identities=11% Similarity=0.043 Sum_probs=93.5
Q ss_pred HHHHHHcCCCC-ceEEEEEcCCCCcHHHHHHHHHHHh--------cccCCCCeEEEEEe-CCCcCHHHHHHHHHHHhCCC
Q 043056 164 RNILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKV--------KSDKLFDQVVFVEV-SQNQDIRKLQGEIADKLGLK 233 (559)
Q Consensus 164 ~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~--------~~~~~f~~~~wv~~-s~~~~~~~~~~~i~~~l~~~ 233 (559)
+.+...+..++ ..+..++|..|.||+++|..+.+.. ....|.+.+.++.. +......++ +++.+.+...
T Consensus 6 ~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~I-r~l~~~~~~~ 84 (299)
T PRK07132 6 KFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEF-LSAINKLYFS 84 (299)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHH-HHHHHHhccC
Confidence 34444454443 4577799999999999999999886 22223333344432 122233332 2333333221
Q ss_pred CcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc--ccchhcCCCCCCCCCcEEEEEecC-cchhccCCCCCCeeecCCC
Q 043056 234 FHEESESGRANSLFKRIKAEKKILIILDNIWENL--DLRVVGIPHGDGHKDCKVLLTARS-LDVLSGKMDSRPNFSIGVL 310 (559)
Q Consensus 234 ~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~-~~va~~~~~~~~~~~l~~L 310 (559)
.- ..+++=++|+|++.... ....+...+....+++.+|++|.+ ..+..........+++.++
T Consensus 85 ~~---------------~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l 149 (299)
T PRK07132 85 SF---------------VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEP 149 (299)
T ss_pred Cc---------------ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCC
Confidence 10 11467788889886543 344555555444556666665544 4443333445679999999
Q ss_pred CHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 043056 311 NEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVT 352 (559)
Q Consensus 311 ~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 352 (559)
++++..+.+... + . + .+.+..++...+|.=-|+..
T Consensus 150 ~~~~l~~~l~~~-~--~-~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 150 DQQKILAKLLSK-N--K-E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CHHHHHHHHHHc-C--C-C---hhHHHHHHHHcCCHHHHHHH
Confidence 999998877764 2 1 1 23355566666652234433
No 213
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.46 E-value=0.015 Score=54.86 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=28.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCc
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQ 217 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 217 (559)
+|+|.|++|+||||+|+.+.........-..+..++...-+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 58999999999999999999887531101234555554443
No 214
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.086 Score=56.90 Aligned_cols=168 Identities=18% Similarity=0.234 Sum_probs=93.6
Q ss_pred CCccchHHHHHHHHHHcC---------CC---CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHH
Q 043056 154 LPFESRMFTLRNILSALE---------DP---DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRK 221 (559)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~---------~~---~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 221 (559)
.++-|-++...+|.+-+. .. +..=|.++|++|.|||-+|+.|+....- -|++|-..
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL-------~FlSVKGP----- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL-------NFLSVKGP----- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee-------eEEeecCH-----
Confidence 445577777777777654 11 2446889999999999999999987653 34555433
Q ss_pred HHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcccc-----------cc----hhcC---CCCC-CCCC
Q 043056 222 LQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENLD-----------LR----VVGI---PHGD-GHKD 282 (559)
Q Consensus 222 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-----------~~----~l~~---~~~~-~~~g 282 (559)
+++..- .....+.+..+.++-++.++|+|.||.+++..- .+ ++.. .+.+ ...+
T Consensus 740 ---ELLNMY-----VGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~ 811 (953)
T KOG0736|consen 740 ---ELLNMY-----VGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQD 811 (953)
T ss_pred ---HHHHHH-----hcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCc
Confidence 111111 011223456677777778999999999976521 11 2211 1222 3334
Q ss_pred cEEEEEecCcchh-ccCCCC---CCeeecCCCCHHHHHH-HHHHHh--CCCCCCcchHHHHHHHHHHhCC
Q 043056 283 CKVLLTARSLDVL-SGKMDS---RPNFSIGVLNEEEAWN-LFKKMA--GDYIEGSEFQSVARDVAKECAG 345 (559)
Q Consensus 283 s~IivTTR~~~va-~~~~~~---~~~~~l~~L~~~ea~~-Lf~~~~--~~~~~~~~~~~~~~~I~~~c~G 345 (559)
.-||=.|...+.. ...+.. ...+.+++=+++++.. .++... |.-..+-+ ..+|+++|.-
T Consensus 812 VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVd----L~eiAk~cp~ 877 (953)
T KOG0736|consen 812 VFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVD----LVEIAKKCPP 877 (953)
T ss_pred eEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcC----HHHHHhhCCc
Confidence 4456566555554 112222 3466777766666544 333222 22222233 3456777754
No 215
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.027 Score=60.25 Aligned_cols=152 Identities=20% Similarity=0.192 Sum_probs=83.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcC
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAE 253 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (559)
..+.+.++|++|.|||.||+.+++..+.. |-. +... + ++. .+-++ ....+..++..-.+.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~--fi~-----v~~~----~----l~s----k~vGe-sek~ir~~F~~A~~~ 334 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSR--FIS-----VKGS----E----LLS----KWVGE-SEKNIRELFEKARKL 334 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCe--EEE-----eeCH----H----Hhc----cccch-HHHHHHHHHHHHHcC
Confidence 45689999999999999999999965432 322 2111 1 110 00011 112233444444456
Q ss_pred CeEEEEEeCCCcccccc-------------hhcCCCC--CCCCCcEEEEEecCcchhcc-C-C--CCCCeeecCCCCHHH
Q 043056 254 KKILIILDNIWENLDLR-------------VVGIPHG--DGHKDCKVLLTARSLDVLSG-K-M--DSRPNFSIGVLNEEE 314 (559)
Q Consensus 254 kr~LlVlDdv~~~~~~~-------------~l~~~~~--~~~~gs~IivTTR~~~va~~-~-~--~~~~~~~l~~L~~~e 314 (559)
.++.|++|+++....+. .++..+. ....+..||-||........ . . .-...+.+.+-+.++
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 79999999996542221 2222221 22234445656655443211 1 1 224588899999999
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHHhCC
Q 043056 315 AWNLFKKMAGDYIEGSEFQSVARDVAKECAG 345 (559)
Q Consensus 315 a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~G 345 (559)
..+.|+.+...........-..+.+++.+.|
T Consensus 415 r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 415 RLEIFKIHLRDKKPPLAEDVDLEELAEITEG 445 (494)
T ss_pred HHHHHHHHhcccCCcchhhhhHHHHHHHhcC
Confidence 9999999987433221111223445555555
No 216
>PRK06547 hypothetical protein; Provisional
Probab=96.45 E-value=0.0046 Score=55.80 Aligned_cols=34 Identities=29% Similarity=0.279 Sum_probs=28.0
Q ss_pred HHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 167 LSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 167 ~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
...+......+|.|.|++|+||||+|+.+.....
T Consensus 7 ~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 7 AARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3344456788999999999999999999998754
No 217
>PRK04296 thymidine kinase; Provisional
Probab=96.45 E-value=0.0039 Score=57.38 Aligned_cols=110 Identities=16% Similarity=0.107 Sum_probs=59.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcC--C-ChhhhHHHHHHHHHc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHE--E-SESGRANSLFKRIKA 252 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--~-~~~~~~~~l~~~l~~ 252 (559)
.++.|+|+.|.||||++..+..+.... -..++.+. +.++.......++..++..... . ...+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 478899999999999999998887543 22333332 1112222233455555543322 1 11112222222 22
Q ss_pred CCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEEEecCcc
Q 043056 253 EKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLLTARSLD 293 (559)
Q Consensus 253 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~ 293 (559)
++.-+||+|.+.-. ++...+...+ ...|..||+|.++.+
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 34458999999543 2122222221 235778999988754
No 218
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.44 E-value=0.018 Score=56.34 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=24.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 172 DPDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
...+.+|+|.|+.|+||||+|+.+..-..
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34568999999999999999988766554
No 219
>PRK07667 uridine kinase; Provisional
Probab=96.44 E-value=0.0043 Score=57.32 Aligned_cols=38 Identities=21% Similarity=0.454 Sum_probs=29.5
Q ss_pred HHHHHHcC--CCCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 164 RNILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 164 ~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
+.|.+.+. .+...+|+|.|++|+||||+|+.+......
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34444443 345589999999999999999999998754
No 220
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.42 E-value=0.021 Score=54.32 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=33.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhC
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLG 231 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 231 (559)
-.++.|.|++|+|||||+.++......+. ..+++++... +..++.+.+ .+++
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~~e~--~~~~~~~~~-~~~g 75 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVSTQL--TTTEFIKQM-MSLG 75 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEeCCC--CHHHHHHHH-HHhC
Confidence 35899999999999999877766543221 3456666433 445655555 3444
No 221
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.41 E-value=0.025 Score=54.14 Aligned_cols=48 Identities=13% Similarity=0.223 Sum_probs=34.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHH
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGE 225 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 225 (559)
.-.++.|.|++|+|||++|.++....-.+ -..++|++... +..++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeC--CHHHHHHH
Confidence 34789999999999999999977654322 35688888765 34444444
No 222
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.37 E-value=0.022 Score=52.80 Aligned_cols=114 Identities=12% Similarity=0.183 Sum_probs=66.3
Q ss_pred CCCccchHHHHHHHHHH----cCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHH
Q 043056 153 YLPFESRMFTLRNILSA----LEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIAD 228 (559)
Q Consensus 153 ~~~~~gR~~~~~~l~~~----L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (559)
...++|-+...+.|++- +..-..--|.+||--|+|||+|++.+.+....+ .-. -|.+.+.
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~--glr--LVEV~k~------------ 122 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE--GLR--LVEVDKE------------ 122 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc--CCe--EEEEcHH------------
Confidence 34466766666666553 334445568899999999999999999987754 212 2222211
Q ss_pred HhCCCCcCCChhhhHHHHHHHHH-cCCeEEEEEeCCC---cccccchhcCCCCC---CCCCcEEEEEecCc
Q 043056 229 KLGLKFHEESESGRANSLFKRIK-AEKKILIILDNIW---ENLDLRVVGIPHGD---GHKDCKVLLTARSL 292 (559)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~l~-~~kr~LlVlDdv~---~~~~~~~l~~~~~~---~~~gs~IivTTR~~ 292 (559)
+...+..+.+.|+ ...||.|..||+. .......+...+.. +.+...++..|.++
T Consensus 123 ----------dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 ----------DLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred ----------HHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 1122334444444 2678999999994 23445555444432 23334444445444
No 223
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.37 E-value=0.0048 Score=53.51 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=27.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCe
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQ 207 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~ 207 (559)
..-|.|.|++|+||||+++.+.+..+.+. |..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g-~kv 36 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKG-YKV 36 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcC-cee
Confidence 45789999999999999999999988653 544
No 224
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.37 E-value=0.017 Score=54.55 Aligned_cols=43 Identities=21% Similarity=0.330 Sum_probs=32.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcC
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQD 218 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 218 (559)
.-.++.|.|++|+||||++.+++.....+ -..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence 34789999999999999999998876433 34577887655543
No 225
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.36 E-value=0.037 Score=55.82 Aligned_cols=99 Identities=20% Similarity=0.277 Sum_probs=57.7
Q ss_pred HHHHHHHHcCCC----CceEEEEEcCCCCcHHH-HHHHHHHHhcccCCCCeEEEEEeCCC-cCHHHHHHHHHHHhCCCCc
Q 043056 162 TLRNILSALEDP----DVNMLGIYGMGGIGKTM-LAEEVARKVKSDKLFDQVVFVEVSQN-QDIRKLQGEIADKLGLKFH 235 (559)
Q Consensus 162 ~~~~l~~~L~~~----~~~vi~I~G~~GiGKTt-La~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~ 235 (559)
.+..+..++.++ +.++|+++||.|+|||| ||+..+...... .=..+..|+.... -...+-++..++-++.+..
T Consensus 186 ~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~-~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~ 264 (407)
T COG1419 186 KLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLK-KKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE 264 (407)
T ss_pred HHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhc-cCcceEEEEeccchhhHHHHHHHHHHHhCCceE
Confidence 344455555433 47899999999999985 555555444121 1234666665443 2445556666777777766
Q ss_pred CCChhhhHHHHHHHHHcCCeEEEEEeCC
Q 043056 236 EESESGRANSLFKRIKAEKKILIILDNI 263 (559)
Q Consensus 236 ~~~~~~~~~~l~~~l~~~kr~LlVlDdv 263 (559)
.......+......+. +. =++.+|-+
T Consensus 265 vv~~~~el~~ai~~l~-~~-d~ILVDTa 290 (407)
T COG1419 265 VVYSPKELAEAIEALR-DC-DVILVDTA 290 (407)
T ss_pred EecCHHHHHHHHHHhh-cC-CEEEEeCC
Confidence 5555555555555554 22 34455554
No 226
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.33 E-value=0.024 Score=56.68 Aligned_cols=58 Identities=21% Similarity=0.386 Sum_probs=42.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccC----CCCeEEEEEeCCCcCHHHHHHHHHHHhCC
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDK----LFDQVVFVEVSQNQDIRKLQGEIADKLGL 232 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 232 (559)
.-.++-|+|++|+|||+++.+++....... .-..++||+....++...+. ++++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 357889999999999999999987643210 01279999999888877654 44555544
No 227
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.0097 Score=57.47 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=24.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
.++|.++||+|.|||+|.+.++++..+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSI 203 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSI 203 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhhee
Confidence 588999999999999999999999765
No 228
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.31 E-value=0.028 Score=56.58 Aligned_cols=89 Identities=15% Similarity=0.215 Sum_probs=55.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQ-DIRKLQGEIADKLGLKFHEESESGRANSLFKRIKA 252 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 252 (559)
+.+++.++|+.|+||||++..++.....+. ..+.+++..... ...+-++...+.++.+.....+...+....+.+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 457999999999999999999988765432 346677765432 33455666666666554333333333444444431
Q ss_pred -CCeEEEEEeCCC
Q 043056 253 -EKKILIILDNIW 264 (559)
Q Consensus 253 -~kr~LlVlDdv~ 264 (559)
+..=++++|-.-
T Consensus 283 ~~~~D~VLIDTAG 295 (407)
T PRK12726 283 VNCVDHILIDTVG 295 (407)
T ss_pred cCCCCEEEEECCC
Confidence 234577788763
No 229
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.31 E-value=0.0038 Score=57.74 Aligned_cols=26 Identities=38% Similarity=0.626 Sum_probs=23.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccc
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVKSD 202 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (559)
+|+|.|++|+||||+|+.+.......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999988754
No 230
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.30 E-value=0.026 Score=56.58 Aligned_cols=58 Identities=22% Similarity=0.406 Sum_probs=42.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCC----CCeEEEEEeCCCcCHHHHHHHHHHHhCC
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKL----FDQVVFVEVSQNQDIRKLQGEIADKLGL 232 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 232 (559)
.-.++-|+|++|+|||+++.+++........ =..++|++....++...+. ++++.++.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~ 162 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGL 162 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCC
Confidence 3568889999999999999999876432111 1479999999888877664 44455543
No 231
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.29 E-value=0.024 Score=50.75 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.++.|.||+|+|||||++.+..+.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 578999999999999999999876
No 232
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.27 E-value=0.0037 Score=53.27 Aligned_cols=22 Identities=45% Similarity=0.827 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 043056 178 LGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~ 199 (559)
|.|.|++|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 233
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.26 E-value=0.0098 Score=51.63 Aligned_cols=43 Identities=30% Similarity=0.393 Sum_probs=32.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHH
Q 043056 178 LGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGE 225 (559)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 225 (559)
|.++|++|+|||+||+.++..... ...-+.++...+..+++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~-----~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR-----PVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC-----EEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc-----ceEEEEeccccccccceee
Confidence 679999999999999999998732 3455677887777766543
No 234
>PHA02244 ATPase-like protein
Probab=96.25 E-value=0.025 Score=56.77 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=26.9
Q ss_pred HHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 163 LRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 163 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
...+..++..+. -|.|+|++|+|||+||+.++....
T Consensus 109 ~~ri~r~l~~~~--PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 109 TADIAKIVNANI--PVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred HHHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHhC
Confidence 345555554332 477899999999999999998754
No 235
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.25 E-value=0.021 Score=58.16 Aligned_cols=86 Identities=24% Similarity=0.314 Sum_probs=54.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCC--ChhhhHHHHHHHHHc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEE--SESGRANSLFKRIKA 252 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 252 (559)
-.++.|.|++|+|||||+.+++...... -..++|++.... ..++ ..-++.++...+.. ........+.+.+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 3689999999999999999998776543 246778876543 3332 22244555433221 011234455555555
Q ss_pred CCeEEEEEeCCCc
Q 043056 253 EKKILIILDNIWE 265 (559)
Q Consensus 253 ~kr~LlVlDdv~~ 265 (559)
.+.-+||+|.+..
T Consensus 157 ~~~~lVVIDSIq~ 169 (372)
T cd01121 157 LKPDLVIIDSIQT 169 (372)
T ss_pred cCCcEEEEcchHH
Confidence 5778999999853
No 236
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.23 E-value=0.017 Score=58.99 Aligned_cols=85 Identities=18% Similarity=0.162 Sum_probs=46.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCC-CcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcC
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQ-NQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAE 253 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (559)
..++.++|++|+||||++..++........+ .+..++... .......++..++.++.+.... .....+...+...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~---~~~~~l~~~l~~~ 298 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPV---KDIKKFKETLARD 298 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeeh---HHHHHHHHHHHhC
Confidence 4689999999999999999998754322122 233343322 1122334444455555543221 1223344444333
Q ss_pred CeEEEEEeCC
Q 043056 254 KKILIILDNI 263 (559)
Q Consensus 254 kr~LlVlDdv 263 (559)
..=++++|-.
T Consensus 299 ~~D~VLIDTa 308 (432)
T PRK12724 299 GSELILIDTA 308 (432)
T ss_pred CCCEEEEeCC
Confidence 3345888843
No 237
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.23 E-value=0.016 Score=53.04 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=31.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHH
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGE 225 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 225 (559)
++.|.|++|+|||+|+.++....... =..++|++.... ..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~~--~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEES--PEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCCC--HHHHHHH
Confidence 36799999999999999987765432 235778876543 4444333
No 238
>PTZ00035 Rad51 protein; Provisional
Probab=96.20 E-value=0.032 Score=56.16 Aligned_cols=59 Identities=17% Similarity=0.296 Sum_probs=40.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcc---c-CCCCeEEEEEeCCCcCHHHHHHHHHHHhCCC
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKS---D-KLFDQVVFVEVSQNQDIRKLQGEIADKLGLK 233 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~-~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 233 (559)
.-.++.|+|++|+|||||+.+++-.... . ..-..++|++....++...+ .++++.++..
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~ 179 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLD 179 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCC
Confidence 3468999999999999999998755431 0 01235779998887777663 4456655543
No 239
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.27 Score=52.83 Aligned_cols=153 Identities=17% Similarity=0.252 Sum_probs=83.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCC
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEK 254 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 254 (559)
..-|.++|++|.|||-||.++......+ ++++... +++.+ .+| ...+....+..+.+.-|
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~~~~-------fisvKGP----ElL~K---yIG------aSEq~vR~lF~rA~~a~ 760 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNSNLR-------FISVKGP----ELLSK---YIG------ASEQNVRDLFERAQSAK 760 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhCCee-------EEEecCH----HHHHH---Hhc------ccHHHHHHHHHHhhccC
Confidence 3458899999999999999998865533 4555443 22222 112 12234556777777789
Q ss_pred eEEEEEeCCCccc-------------ccchhcCCCC--CCCCCcEEEE-EecCcchhccCCCCC---CeeecCCCCHHHH
Q 043056 255 KILIILDNIWENL-------------DLRVVGIPHG--DGHKDCKVLL-TARSLDVLSGKMDSR---PNFSIGVLNEEEA 315 (559)
Q Consensus 255 r~LlVlDdv~~~~-------------~~~~l~~~~~--~~~~gs~Iiv-TTR~~~va~~~~~~~---~~~~l~~L~~~ea 315 (559)
+|.|.+|..++.. ..+++...+. .+-.|.-|+. |||-.-+-....... +.+.-+.-+..+-
T Consensus 761 PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eR 840 (952)
T KOG0735|consen 761 PCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPER 840 (952)
T ss_pred CeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHH
Confidence 9999999997642 1333333332 1234555665 445332211122222 2333344455667
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHH
Q 043056 316 WNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVS 349 (559)
Q Consensus 316 ~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa 349 (559)
.++|+.....-.... ..-.+.++.+.+|..-|
T Consensus 841 l~il~~ls~s~~~~~--~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 841 LEILQVLSNSLLKDT--DVDLECLAQKTDGFTGA 872 (952)
T ss_pred HHHHHHHhhccCCcc--ccchHHHhhhcCCCchh
Confidence 777776654211111 11245567777776543
No 240
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.026 Score=56.54 Aligned_cols=84 Identities=25% Similarity=0.378 Sum_probs=58.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCC--ChhhhHHHHHHHHHcC
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEE--SESGRANSLFKRIKAE 253 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~~ 253 (559)
.+|.|-|.+|+|||||..++..+...+. .++||+-.+.. .++ +--++.|+....+. -.....+.+.+.+.+.
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES~--~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~ 167 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEESL--QQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQE 167 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcCH--HHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHhc
Confidence 5899999999999999999999987653 67777655443 222 23345666544321 1223456677777778
Q ss_pred CeEEEEEeCCCc
Q 043056 254 KKILIILDNIWE 265 (559)
Q Consensus 254 kr~LlVlDdv~~ 265 (559)
++-++|+|-+..
T Consensus 168 ~p~lvVIDSIQT 179 (456)
T COG1066 168 KPDLVVIDSIQT 179 (456)
T ss_pred CCCEEEEeccce
Confidence 899999999853
No 241
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.19 E-value=0.0063 Score=64.08 Aligned_cols=49 Identities=22% Similarity=0.298 Sum_probs=41.9
Q ss_pred CCCccchHHHHHHHHHHcC------CCCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 153 YLPFESRMFTLRNILSALE------DPDVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
+..++|-++.++++++.|. ....+++.++||+|+||||||+.+.+-...
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 3458899999999999883 556689999999999999999999997664
No 242
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.15 E-value=0.055 Score=56.05 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.+.++.++|++|+||||.+..++....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 467999999999999999999888754
No 243
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.15 E-value=0.027 Score=57.55 Aligned_cols=89 Identities=13% Similarity=0.152 Sum_probs=53.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCeEEEEEeCCC-cCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHH
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSD--KLFDQVVFVEVSQN-QDIRKLQGEIADKLGLKFHEESESGRANSLFKRI 250 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l 250 (559)
..++|.++|+.|+||||.+..++...... ..-..+..+++... .....-++...+.++.+................+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 45799999999999999999998775432 11234556665532 2223335666666766543333323333333333
Q ss_pred HcCCeEEEEEeCCC
Q 043056 251 KAEKKILIILDNIW 264 (559)
Q Consensus 251 ~~~kr~LlVlDdv~ 264 (559)
.+.-++++|..-
T Consensus 253 --~~~DlVLIDTaG 264 (388)
T PRK12723 253 --KDFDLVLVDTIG 264 (388)
T ss_pred --CCCCEEEEcCCC
Confidence 345688888873
No 244
>PRK08233 hypothetical protein; Provisional
Probab=96.13 E-value=0.005 Score=56.15 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
..+|+|.|++|+||||||..+.....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998764
No 245
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.13 E-value=0.0057 Score=57.30 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.+..+|+|.|++|+|||||++.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999999876
No 246
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.11 E-value=0.25 Score=53.03 Aligned_cols=168 Identities=15% Similarity=0.092 Sum_probs=100.5
Q ss_pred CCccchHHHHHHHHHHcC----C-CCceEEEEEcCCCCcHHHHHHHHHHHhcc------cCCCCeEEEEEeCCCcCHHHH
Q 043056 154 LPFESRMFTLRNILSALE----D-PDVNMLGIYGMGGIGKTMLAEEVARKVKS------DKLFDQVVFVEVSQNQDIRKL 222 (559)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~----~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~------~~~f~~~~wv~~s~~~~~~~~ 222 (559)
..+-+|+.+..+|-..+. + ..-..+-|.|-+|+|||..+..|.+.... -..| ..+.|+.-.-....++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f-~yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKF-DYVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCc-cEEEEcceeecCHHHH
Confidence 346689999988888775 3 33348999999999999999999986541 1123 2455665566678999
Q ss_pred HHHHHHHhCCCCcCCChhhhHHHHHHHHH----cCCeEEEEEeCCCcccc-cchhc-CCCCC-CCCCcEEEEEec--Ccc
Q 043056 223 QGEIADKLGLKFHEESESGRANSLFKRIK----AEKKILIILDNIWENLD-LRVVG-IPHGD-GHKDCKVLLTAR--SLD 293 (559)
Q Consensus 223 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~~-~~~l~-~~~~~-~~~gs~IivTTR--~~~ 293 (559)
+..|..++....... ...+..+..+.. ..+.+++++|+++..-. -+.++ ..|.| ..++||++|.+= ..+
T Consensus 475 Y~~I~~~lsg~~~~~--~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmd 552 (767)
T KOG1514|consen 475 YEKIWEALSGERVTW--DAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMD 552 (767)
T ss_pred HHHHHHhcccCcccH--HHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccccc
Confidence 999999986543221 112223333332 24678999999864421 01111 11111 345676555431 111
Q ss_pred hhcc-------CCCCCCeeecCCCCHHHHHHHHHHHhC
Q 043056 294 VLSG-------KMDSRPNFSIGVLNEEEAWNLFKKMAG 324 (559)
Q Consensus 294 va~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 324 (559)
.... ..-+...+...|.++++-.++...++.
T Consensus 553 lPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~ 590 (767)
T KOG1514|consen 553 LPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLK 590 (767)
T ss_pred CHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhc
Confidence 1110 111335677788888888777777665
No 247
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.11 E-value=0.0099 Score=61.72 Aligned_cols=50 Identities=20% Similarity=0.279 Sum_probs=40.7
Q ss_pred CccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCC
Q 043056 155 PFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFD 206 (559)
Q Consensus 155 ~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~ 206 (559)
.++||++.++.+...+..+ .-|.|.|++|+|||+||+.+.........|.
T Consensus 21 ~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 3889999999998888755 3588999999999999999998765433443
No 248
>PTZ00301 uridine kinase; Provisional
Probab=96.11 E-value=0.0056 Score=57.12 Aligned_cols=26 Identities=27% Similarity=0.579 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
..+|+|.|++|+||||||+.+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46899999999999999999987764
No 249
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.10 E-value=0.026 Score=56.23 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=40.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcc---cC-CCCeEEEEEeCCCcCHHHHHHHHHHHhCC
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKS---DK-LFDQVVFVEVSQNQDIRKLQGEIADKLGL 232 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~-~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 232 (559)
.-.++.|+|++|+|||||+.+++..... .. .-..++|++....++...+ .++++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 3578999999999999999998763221 11 1235799998887777663 445555554
No 250
>PRK04328 hypothetical protein; Provisional
Probab=96.10 E-value=0.032 Score=53.77 Aligned_cols=41 Identities=17% Similarity=0.269 Sum_probs=31.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCC
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQN 216 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 216 (559)
.-.++.|.|++|+|||+|+.++....-.+ -...+|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCC
Confidence 34689999999999999999977664322 345788887664
No 251
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.09 E-value=0.026 Score=51.05 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccc
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVKSD 202 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (559)
++.++|++|+||||++..++......
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 68899999999999999999876543
No 252
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.09 E-value=0.023 Score=59.02 Aligned_cols=86 Identities=13% Similarity=0.201 Sum_probs=48.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc-ccCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVK-SDKLFDQVVFVEVSQNQ-DIRKLQGEIADKLGLKFHEESESGRANSLFKRIKA 252 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 252 (559)
.+++.++|++|+||||++..++.... .. .-..+..++..... ...+-++...+.++.+.............+..+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~-~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY-GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC-
Confidence 36899999999999999999877654 22 12356667654321 1223344444555554432222222333333332
Q ss_pred CCeEEEEEeCC
Q 043056 253 EKKILIILDNI 263 (559)
Q Consensus 253 ~kr~LlVlDdv 263 (559)
..=+|++|..
T Consensus 299 -~~DlVlIDt~ 308 (424)
T PRK05703 299 -DCDVILIDTA 308 (424)
T ss_pred -CCCEEEEeCC
Confidence 3467888866
No 253
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.08 E-value=0.011 Score=54.85 Aligned_cols=109 Identities=9% Similarity=0.147 Sum_probs=55.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHH-HHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCC
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIR-KLQGEIADKLGLKFHEESESGRANSLFKRIKAEK 254 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 254 (559)
.+|.|+|+.|+||||++..+....... ....++. +....... .-...+..+-.. ..........+...+. ..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~--~~~~i~t-~e~~~E~~~~~~~~~i~q~~v---g~~~~~~~~~i~~aLr-~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN--KTHHILT-IEDPIEFVHESKRSLINQREV---GLDTLSFENALKAALR-QD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc--CCcEEEE-EcCCccccccCccceeeeccc---CCCccCHHHHHHHHhc-CC
Confidence 578999999999999999887765432 2233332 22111000 000001111000 1111122233444444 34
Q ss_pred eEEEEEeCCCcccccchhcCCCCCCCCCcEEEEEecCcch
Q 043056 255 KILIILDNIWENLDLRVVGIPHGDGHKDCKVLLTARSLDV 294 (559)
Q Consensus 255 r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v 294 (559)
+=++++|++.+.+....+... ...|..++.|+-..++
T Consensus 75 pd~ii~gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 75 PDVILVGEMRDLETIRLALTA---AETGHLVMSTLHTNSA 111 (198)
T ss_pred cCEEEEcCCCCHHHHHHHHHH---HHcCCEEEEEecCCcH
Confidence 679999999876655443222 1235557777765544
No 254
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.08 E-value=0.025 Score=52.82 Aligned_cols=85 Identities=26% Similarity=0.507 Sum_probs=52.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCC-cCHHHHHHHHHHHhCCC-------CcCCChhhh-----
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQN-QDIRKLQGEIADKLGLK-------FHEESESGR----- 242 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 242 (559)
..+.|.|.+|+|||+|+..+.+... -+.++++.+++. ..+.++.+++...-..+ ..+.+....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 4689999999999999999999875 345588888755 45556666654321111 111111111
Q ss_pred -HHHHHHHHH-cCCeEEEEEeCCC
Q 043056 243 -ANSLFKRIK-AEKKILIILDNIW 264 (559)
Q Consensus 243 -~~~l~~~l~-~~kr~LlVlDdv~ 264 (559)
.-.+-+.+. ++|..|+++||+.
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETHH
T ss_pred cchhhhHHHhhcCCceeehhhhhH
Confidence 112223332 4899999999983
No 255
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.07 E-value=0.04 Score=52.59 Aligned_cols=86 Identities=14% Similarity=0.239 Sum_probs=52.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcC-----------------
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHE----------------- 236 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----------------- 236 (559)
.-.++.|+|++|+|||+|+.++......+ =..++|++.... ..++.+.+ .+++....+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 45789999999999999999996653222 346888888654 34554443 333322110
Q ss_pred ----CChhhhHHHHHHHHHcCCeEEEEEeCCC
Q 043056 237 ----ESESGRANSLFKRIKAEKKILIILDNIW 264 (559)
Q Consensus 237 ----~~~~~~~~~l~~~l~~~kr~LlVlDdv~ 264 (559)
.........+.+.+.+.+.-++|+|.+-
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112334444444444456689999875
No 256
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.06 E-value=0.048 Score=52.87 Aligned_cols=88 Identities=17% Similarity=0.258 Sum_probs=54.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHH-hCCC-CcCCChhhhHHHHHHHHH
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADK-LGLK-FHEESESGRANSLFKRIK 251 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~-l~~~-~~~~~~~~~~~~l~~~l~ 251 (559)
.-+++=|+|+.|+||||+|.+++-..... -..++|++..+.+++..+.. +... +..- .......+....+.+.+.
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 45788999999999999999988765543 34789999999998876533 3333 2110 111112222223333332
Q ss_pred c---CCeEEEEEeCCC
Q 043056 252 A---EKKILIILDNIW 264 (559)
Q Consensus 252 ~---~kr~LlVlDdv~ 264 (559)
. .+--|+|+|.+-
T Consensus 136 ~~~~~~i~LvVVDSva 151 (279)
T COG0468 136 RSGAEKIDLLVVDSVA 151 (279)
T ss_pred HhccCCCCEEEEecCc
Confidence 1 235688888884
No 257
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.05 E-value=0.011 Score=55.93 Aligned_cols=62 Identities=24% Similarity=0.291 Sum_probs=39.1
Q ss_pred HHHHHHHHcC--CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHH
Q 043056 162 TLRNILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQ 223 (559)
Q Consensus 162 ~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 223 (559)
....+++.+. .++..+|+|.|++|+|||||...+....+.+.+=-.++=|.-|+.++--.++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccc
Confidence 3445555544 4577899999999999999999999988765444445556666666544443
No 258
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.05 E-value=0.033 Score=50.02 Aligned_cols=80 Identities=16% Similarity=0.195 Sum_probs=46.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcC-CeE
Q 043056 178 LGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAE-KKI 256 (559)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~-kr~ 256 (559)
+.|.|.+|+|||++|.++.... ...++++.-...++. ++.+.|.+.-..........+....+.+.+... +.-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~ 75 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGD 75 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCC
Confidence 6799999999999999998651 235677776666654 344444432222222222223333444444321 334
Q ss_pred EEEEeCC
Q 043056 257 LIILDNI 263 (559)
Q Consensus 257 LlVlDdv 263 (559)
.+++|.+
T Consensus 76 ~VLIDcl 82 (169)
T cd00544 76 VVLIDCL 82 (169)
T ss_pred EEEEEcH
Confidence 7999987
No 259
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.05 E-value=0.014 Score=56.54 Aligned_cols=116 Identities=21% Similarity=0.168 Sum_probs=64.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCC-CCc-------CCChhhhH
Q 043056 172 DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGL-KFH-------EESESGRA 243 (559)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-~~~-------~~~~~~~~ 243 (559)
.+....++|.|+.|+|||||.+.+....... ...+++.-. .....+-..++...... +.. ..+.....
T Consensus 108 ~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~-~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~ 183 (270)
T TIGR02858 108 NNRVLNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGK-KVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKA 183 (270)
T ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCE-EeecchhHHHHHHHhcccccccccccccccccchHH
Confidence 3445789999999999999999999776532 233333110 00000111233322211 111 01111122
Q ss_pred HHHHHHHHcCCeEEEEEeCCCcccccchhcCCCCCCCCCcEEEEEecCcch
Q 043056 244 NSLFKRIKAEKKILIILDNIWENLDLRVVGIPHGDGHKDCKVLLTARSLDV 294 (559)
Q Consensus 244 ~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v 294 (559)
..+...+....+-++++|.+-....+..+...+ ..|..||+||.+..+
T Consensus 184 ~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 184 EGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHH
Confidence 334444444568899999997666565554443 247789999986554
No 260
>PRK05439 pantothenate kinase; Provisional
Probab=96.04 E-value=0.044 Score=54.15 Aligned_cols=45 Identities=18% Similarity=0.110 Sum_probs=30.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCc
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQ 217 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 217 (559)
+.+-+|+|.|.+|+||||+|+.+.........-..+.-++...-+
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 456799999999999999999998865432111234445554433
No 261
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=96.04 E-value=0.029 Score=53.73 Aligned_cols=74 Identities=11% Similarity=0.124 Sum_probs=58.0
Q ss_pred HHHHHhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCccchHHHHHHHHHHHHHHHHHHhhhhHHH
Q 043056 18 PPAYRQISYLRESKCTGNVQNLKAEVENLKSERVSTQHKVDEA-KRKGEEIEENVENWLARANNVIVEADKFTDDEA 93 (559)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a-~~~~~~~~~~v~~Wl~~v~~~ayd~ed~ld~~~ 93 (559)
..+.+.+..+. ..|...+..++.+++-++.++++++.||+.. ++.....+. .+....++-+.||++|+++|-+.
T Consensus 299 dFlL~NLkdfq-~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~-~ed~a~~ii~kAyevEYVVDaCi 373 (402)
T PF12061_consen 299 DFLLKNLKDFQ-GRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDT-NEDCATQIIRKAYEVEYVVDACI 373 (402)
T ss_pred HHHHhhHHHHh-ccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhh-hhhHHHHHHHHHhheeeeeehhh
Confidence 33444444443 5667778899999999999999999999887 443444444 99999999999999999999764
No 262
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.03 E-value=0.0059 Score=45.82 Aligned_cols=23 Identities=30% Similarity=0.601 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
+|.|.|+.|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 263
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.02 E-value=0.0062 Score=53.09 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
+|.+.|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 588999999999999999987654
No 264
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.02 E-value=0.018 Score=52.64 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
+|.|+|++|+||||+|+.+.....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999988654
No 265
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.01 E-value=0.066 Score=53.01 Aligned_cols=85 Identities=20% Similarity=0.308 Sum_probs=51.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcC-----CChhhhHHHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHE-----ESESGRANSLFKR 249 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 249 (559)
-+++-|+|+.|+||||||..+....... -..++|+.....++. ..++.+|.+.+. .+..+..-.+.+.
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~-----~~a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDP-----EYAESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---H-----HHHHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchh-----hHHHhcCccccceEEecCCcHHHHHHHHHH
Confidence 4689999999999999999998876543 356899998887765 345666665432 1112233334444
Q ss_pred H-HcCCeEEEEEeCCCcc
Q 043056 250 I-KAEKKILIILDNIWEN 266 (559)
Q Consensus 250 l-~~~kr~LlVlDdv~~~ 266 (559)
+ ..+.--++|+|.|-..
T Consensus 126 lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHTTSESEEEEE-CTT-
T ss_pred HhhcccccEEEEecCccc
Confidence 4 4455568999998543
No 266
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.01 E-value=0.047 Score=56.23 Aligned_cols=87 Identities=14% Similarity=0.249 Sum_probs=47.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCC-CcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcC
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQ-NQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAE 253 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (559)
..+++++|+.|+||||++..+..........+.+..++... .....+-+....+.++.+.............+..+. +
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~-~ 269 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR-G 269 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc-C
Confidence 47999999999999999998887543222233444444332 223333345556666655443222222223333332 2
Q ss_pred CeEEEEEeCC
Q 043056 254 KKILIILDNI 263 (559)
Q Consensus 254 kr~LlVlDdv 263 (559)
.-++++|-.
T Consensus 270 -~d~VLIDTa 278 (420)
T PRK14721 270 -KHMVLIDTV 278 (420)
T ss_pred -CCEEEecCC
Confidence 345666654
No 267
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.99 E-value=0.0096 Score=52.35 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=28.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEE
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVE 212 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 212 (559)
..+|.|.|.+|+||||||+.+........ ..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g--~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG--IKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--S-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEec
Confidence 36899999999999999999999987652 3455553
No 268
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.99 E-value=0.035 Score=55.78 Aligned_cols=58 Identities=21% Similarity=0.312 Sum_probs=42.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcc---cC-CCCeEEEEEeCCCcCHHHHHHHHHHHhCCC
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKS---DK-LFDQVVFVEVSQNQDIRKLQGEIADKLGLK 233 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~-~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 233 (559)
-.++-|+|++|+|||+|+..++-.... .. .-..++|++....++...+ .+|++.++.+
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~ 184 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLN 184 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCC
Confidence 468889999999999999988754321 11 1136999999999888776 4566666554
No 269
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.98 E-value=0.045 Score=59.15 Aligned_cols=50 Identities=12% Similarity=0.155 Sum_probs=38.3
Q ss_pred CCCCCccchHHHHHHHHHHcC--CCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 151 KDYLPFESRMFTLRNILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.....++|....+.++.+.+. ......|.|+|..|+|||++|+.+++...
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 345578898888887777664 22334578999999999999999998754
No 270
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.98 E-value=0.042 Score=54.21 Aligned_cols=43 Identities=30% Similarity=0.400 Sum_probs=34.9
Q ss_pred CccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHH
Q 043056 155 PFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVAR 197 (559)
Q Consensus 155 ~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~ 197 (559)
++.+|..+-.--+++|.++....|.+.|.+|+|||-||....-
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgl 267 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGL 267 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHH
Confidence 3445666666677888899999999999999999999877543
No 271
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.95 E-value=0.0077 Score=56.33 Aligned_cols=28 Identities=32% Similarity=0.515 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
+...+|+|+|++|+|||||++.+.....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999998754
No 272
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.94 E-value=0.013 Score=53.11 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
.|.|.|++|+||||+|+.+.+....
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i 26 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL 26 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999998543
No 273
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.94 E-value=0.062 Score=59.19 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=36.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCC-CcCHHHHHHHHHHHhCCC
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQ-NQDIRKLQGEIADKLGLK 233 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~ 233 (559)
.+++.++|+.|+||||.+..++......+....+..++... .....+-++...+.++.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvp 244 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVP 244 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCC
Confidence 47999999999999999999887664322123455555432 112334444455555443
No 274
>PRK10867 signal recognition particle protein; Provisional
Probab=95.94 E-value=0.044 Score=56.81 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
+.+.+|.++|++|+||||.+..++.....
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~ 126 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKK 126 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 34689999999999999988888876554
No 275
>PRK06762 hypothetical protein; Provisional
Probab=95.93 E-value=0.0074 Score=54.23 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
+.+|.|+|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 276
>PRK14974 cell division protein FtsY; Provisional
Probab=95.93 E-value=0.079 Score=53.11 Aligned_cols=89 Identities=21% Similarity=0.259 Sum_probs=49.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCC-CcCHHHHHHHHHHHhCCCCcCC----ChhhhHHHHHH
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQ-NQDIRKLQGEIADKLGLKFHEE----SESGRANSLFK 248 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~----~~~~~~~~l~~ 248 (559)
++.+|.++|+.|+||||++..++...... .+ .++.++... .....+-++.....++.+.... +....+....+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 46899999999999999998888776543 23 333443221 1223344566677776543221 11111222222
Q ss_pred HHHcCCeEEEEEeCCC
Q 043056 249 RIKAEKKILIILDNIW 264 (559)
Q Consensus 249 ~l~~~kr~LlVlDdv~ 264 (559)
.......-++++|..-
T Consensus 217 ~~~~~~~DvVLIDTaG 232 (336)
T PRK14974 217 HAKARGIDVVLIDTAG 232 (336)
T ss_pred HHHhCCCCEEEEECCC
Confidence 2222222388889874
No 277
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.90 E-value=0.045 Score=57.37 Aligned_cols=60 Identities=15% Similarity=0.194 Sum_probs=38.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCC-CcCHHHHHHHHHHHhCCCC
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQ-NQDIRKLQGEIADKLGLKF 234 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~ 234 (559)
..+++++|+.|+||||++..++.....+..-..+..++... .....+-++...+.++.+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv 316 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPV 316 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCe
Confidence 37999999999999999999998764332222455555432 2233344555556665543
No 278
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.88 E-value=0.016 Score=55.64 Aligned_cols=64 Identities=27% Similarity=0.377 Sum_probs=47.9
Q ss_pred HHHHHHcC--CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHH
Q 043056 164 RNILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIA 227 (559)
Q Consensus 164 ~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 227 (559)
.+|+..+. .++..+|+|.|.+|+|||||...+......+.+=-.++=|.-|+.++--.++.+=.
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRi 103 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRI 103 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHh
Confidence 44555554 56778999999999999999999999987776655667777777776655554433
No 279
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.87 E-value=0.0086 Score=55.32 Aligned_cols=29 Identities=34% Similarity=0.587 Sum_probs=25.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSD 202 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (559)
++.+|+|.|.+|+||||+|+.++......
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 45799999999999999999999987753
No 280
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.22 Score=46.47 Aligned_cols=131 Identities=23% Similarity=0.308 Sum_probs=72.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHc
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKA 252 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 252 (559)
.+++-+.++|++|.|||-||+.|+++. .+-|+.+|... +.+..+ |. .......++--...
T Consensus 179 aQPKGvlLygppgtGktLlaraVahht-------~c~firvsgse----lvqk~i---ge------gsrmvrelfvmare 238 (404)
T KOG0728|consen 179 AQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSE----LVQKYI---GE------GSRMVRELFVMARE 238 (404)
T ss_pred CCCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEechHH----HHHHHh---hh------hHHHHHHHHHHHHh
Confidence 456778999999999999999998753 34466666542 222211 10 01122222222233
Q ss_pred CCeEEEEEeCCCcccc----------------cchhcCCCC--CCCCCcEEEEEecCcchhc-cCCC---CCCeeecCCC
Q 043056 253 EKKILIILDNIWENLD----------------LRVVGIPHG--DGHKDCKVLLTARSLDVLS-GKMD---SRPNFSIGVL 310 (559)
Q Consensus 253 ~kr~LlVlDdv~~~~~----------------~~~l~~~~~--~~~~gs~IivTTR~~~va~-~~~~---~~~~~~l~~L 310 (559)
.-+.+++.|.+++... .-.+...+. ...+.-+||..|..-+++. .... ...-++..+-
T Consensus 239 hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p 318 (404)
T KOG0728|consen 239 HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPP 318 (404)
T ss_pred cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCC
Confidence 4577888888764310 011112221 1234567887776555541 1222 2346777777
Q ss_pred CHHHHHHHHHHHh
Q 043056 311 NEEEAWNLFKKMA 323 (559)
Q Consensus 311 ~~~ea~~Lf~~~~ 323 (559)
+.+.-.++++-+.
T Consensus 319 ~e~ar~~ilkihs 331 (404)
T KOG0728|consen 319 NEEARLDILKIHS 331 (404)
T ss_pred CHHHHHHHHHHhh
Confidence 7777777776554
No 281
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.82 E-value=0.082 Score=62.93 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
.++=|.++|++|+|||.||+.++....+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCC
Confidence 3567889999999999999999998654
No 282
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.81 E-value=0.0061 Score=59.39 Aligned_cols=88 Identities=24% Similarity=0.345 Sum_probs=47.2
Q ss_pred HHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHH
Q 043056 165 NILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRAN 244 (559)
Q Consensus 165 ~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 244 (559)
.+++.+...+ +-+.++|+.|+|||++++.......... | ...-++.+...+...+++.|-..+... ... .
T Consensus 24 ~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~~~~-~-~~~~~~~s~~Tts~~~q~~ie~~l~k~-~~~-~----- 93 (272)
T PF12775_consen 24 YLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLDSDK-Y-LVITINFSAQTTSNQLQKIIESKLEKR-RGR-V----- 93 (272)
T ss_dssp HHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCSTTCC-E-EEEEEES-TTHHHHHHHHCCCTTECEC-TTE-E-----
T ss_pred HHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCCccc-c-ceeEeeccCCCCHHHHHHHHhhcEEcC-CCC-C-----
Confidence 3444444333 4678999999999999999887544321 1 244556666554444432221111100 000 0
Q ss_pred HHHHHHHcCCeEEEEEeCCCc
Q 043056 245 SLFKRIKAEKKILIILDNIWE 265 (559)
Q Consensus 245 ~l~~~l~~~kr~LlVlDdv~~ 265 (559)
.. =..+|++++++||+.-
T Consensus 94 --~g-P~~~k~lv~fiDDlN~ 111 (272)
T PF12775_consen 94 --YG-PPGGKKLVLFIDDLNM 111 (272)
T ss_dssp --EE-EESSSEEEEEEETTT-
T ss_pred --CC-CCCCcEEEEEecccCC
Confidence 00 0137899999999953
No 283
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.81 E-value=0.044 Score=52.20 Aligned_cols=119 Identities=22% Similarity=0.228 Sum_probs=66.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCC-----CcCHHHHHHHHHHHhCCCCc-------CCChhh
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQ-----NQDIRKLQGEIADKLGLKFH-------EESESG 241 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~~-------~~~~~~ 241 (559)
+-.+++|+|.+|.||||+++.+..-.... .+.++..-.+ .....+-..++++.++.... +-+..+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 34689999999999999999999876532 2333332211 22233445666666664321 112222
Q ss_pred hHHHHHHHHHcCCeEEEEEeCCCccccc---ch---hcCCCCCCCCCcEEEEEecCcchhc
Q 043056 242 RANSLFKRIKAEKKILIILDNIWENLDL---RV---VGIPHGDGHKDCKVLLTARSLDVLS 296 (559)
Q Consensus 242 ~~~~l~~~l~~~kr~LlVlDdv~~~~~~---~~---l~~~~~~~~~gs~IivTTR~~~va~ 296 (559)
...-.+.+...-++-++|.|..-+..+. .. +...+. ...|...+..|-+-.++.
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~ 174 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVR 174 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhh
Confidence 2222333333367899999997654322 11 111111 123556777777766653
No 284
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.80 E-value=0.06 Score=53.92 Aligned_cols=36 Identities=28% Similarity=0.481 Sum_probs=29.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEe
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEV 213 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 213 (559)
..+.++|++|+|||.||..+++....+. ..++|+++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g--~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEEH
Confidence 6799999999999999999999876542 35666653
No 285
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.77 E-value=0.011 Score=66.21 Aligned_cols=186 Identities=16% Similarity=0.159 Sum_probs=87.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh-cccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcC-------CChhhhHH
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKV-KSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHE-------ESESGRAN 244 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~-~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~ 244 (559)
.+..++.|+|+.|.||||+.+.+.-.. ..+.. ++|.......+ ..+..+...++....- ........
T Consensus 320 ~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G----~~Vpa~~~~~~-~~~d~i~~~i~~~~si~~~LStfS~~m~~~~ 394 (771)
T TIGR01069 320 FEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG----IPIPANEHSEI-PYFEEIFADIGDEQSIEQNLSTFSGHMKNIS 394 (771)
T ss_pred CCceEEEEECCCCCCchHHHHHHHHHHHHHHhC----CCccCCccccc-cchhheeeecChHhHHhhhhhHHHHHHHHHH
Confidence 345789999999999999999987652 11111 01111110000 0011111111100000 00011122
Q ss_pred HHHHHHHcCCeEEEEEeCCCccccc---ch----hcCCCCCCCCCcEEEEEecCcchhccCCCCCCe--eecCCCCHHHH
Q 043056 245 SLFKRIKAEKKILIILDNIWENLDL---RV----VGIPHGDGHKDCKVLLTARSLDVLSGKMDSRPN--FSIGVLNEEEA 315 (559)
Q Consensus 245 ~l~~~l~~~kr~LlVlDdv~~~~~~---~~----l~~~~~~~~~gs~IivTTR~~~va~~~~~~~~~--~~l~~L~~~ea 315 (559)
.+...+ ..+-|+++|..-...+. .. +...+ ...|+.+|+||....+.......... ..+. ++.+ .
T Consensus 395 ~il~~~--~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l--~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~~-~ 468 (771)
T TIGR01069 395 AILSKT--TENSLVLFDELGAGTDPDEGSALAISILEYL--LKQNAQVLITTHYKELKALMYNNEGVENASVL-FDEE-T 468 (771)
T ss_pred HHHHhc--CCCcEEEecCCCCCCCHHHHHHHHHHHHHHH--HhcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcCC-C
Confidence 222222 46899999998654321 11 22222 13578899999987654211111111 1110 1111 0
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHhcCChHHHHHHHHHhcC
Q 043056 316 WNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTIARALRNKRLFEWKDALEQLRR 374 (559)
Q Consensus 316 ~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~~l~~ 374 (559)
.....+...+... ...|-+|++++ |+|-.|..-|.-+......+...++..|..
T Consensus 469 l~p~Ykl~~G~~g----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 469 LSPTYKLLKGIPG----ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred CceEEEECCCCCC----CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 0000000001111 23466777776 889888888888876655566666666543
No 286
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.76 E-value=0.75 Score=45.79 Aligned_cols=47 Identities=19% Similarity=0.160 Sum_probs=33.8
Q ss_pred eeecCCCCHHHHHHHHHHHhCCCCCC--cchHHHHHHHHHHhCCChHHH
Q 043056 304 NFSIGVLNEEEAWNLFKKMAGDYIEG--SEFQSVARDVAKECAGLPVSV 350 (559)
Q Consensus 304 ~~~l~~L~~~ea~~Lf~~~~~~~~~~--~~~~~~~~~I~~~c~GlPLai 350 (559)
++++++++.+|+..++.-+....... ...+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 78999999999999999887532221 233455666777779999644
No 287
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.75 E-value=0.019 Score=49.93 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=29.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCC
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQ 215 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 215 (559)
++|.|+|+.|+|||||++.+.+....+ .+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence 479999999999999999999998754 466666666655
No 288
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.75 E-value=1.5 Score=44.88 Aligned_cols=59 Identities=22% Similarity=0.344 Sum_probs=41.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEe-CCCcCHHHHHHHHHHHhCCCC
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEV-SQNQDIRKLQGEIADKLGLKF 234 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~-s~~~~~~~~~~~i~~~l~~~~ 234 (559)
.+.+|-.+|.-|+||||-+-.+++..+.+ .+. +.-|++ -..+...+-++.+..+.+.+.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~-~~k-vllVaaD~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKK-GKK-VLLVAADTYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHc-CCc-eEEEecccCChHHHHHHHHHHHHcCCce
Confidence 46799999999999999999999988763 232 233332 234455666777888877654
No 289
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.74 E-value=0.033 Score=51.32 Aligned_cols=41 Identities=27% Similarity=0.463 Sum_probs=29.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCC--------CeEEEEEeCCC
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLF--------DQVVFVEVSQN 216 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~s~~ 216 (559)
.+..|.|++|+||||++.++.........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 478999999999999999999876543222 35888887665
No 290
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.72 E-value=0.087 Score=51.36 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=30.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeC
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVS 214 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 214 (559)
.+.++|.++|++|+||||++..++...... -..+.+++..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCC
Confidence 356899999999999999999998877543 2356666554
No 291
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.062 Score=50.50 Aligned_cols=92 Identities=23% Similarity=0.322 Sum_probs=56.0
Q ss_pred CCCccchHHHHHHHHHHcC-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCH
Q 043056 153 YLPFESRMFTLRNILSALE-------------DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDI 219 (559)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 219 (559)
+..+-|-.+.+++|.+... -+.++-|.++|++|.|||-+|+.|+|+.... | +.+-..
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdac--f-----irvigs--- 245 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDAC--F-----IRVIGS--- 245 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCce--E-----EeehhH---
Confidence 3445577777777766543 1346778899999999999999999875432 2 322111
Q ss_pred HHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCC
Q 043056 220 RKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIW 264 (559)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~ 264 (559)
++.+... | ........+++-....|-|+|++|.++
T Consensus 246 -elvqkyv---g------egarmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 246 -ELVQKYV---G------EGARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred -HHHHHHh---h------hhHHHHHHHHHHhcccceEEEEeeccc
Confidence 1111111 1 111233445555555788999999885
No 292
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.71 E-value=0.031 Score=50.85 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.+++|.|+.|+|||||++.+.-...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 5799999999999999999987643
No 293
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.69 E-value=0.0047 Score=53.66 Aligned_cols=41 Identities=27% Similarity=0.328 Sum_probs=27.6
Q ss_pred HHHHHHHHHcC--CCCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 161 FTLRNILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 161 ~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
..++++.+.+. ......|.|+|..|+||+++|+.++.....
T Consensus 5 ~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~ 47 (138)
T PF14532_consen 5 PAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGR 47 (138)
T ss_dssp HHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTT
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCc
Confidence 33444444333 133356889999999999999999987553
No 294
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.68 E-value=0.055 Score=52.48 Aligned_cols=40 Identities=28% Similarity=0.447 Sum_probs=30.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCC
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQ 215 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 215 (559)
.-.++.|.|++|+|||+++.++......+ =..++|++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecC
Confidence 34689999999999999999987654322 23678888764
No 295
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.67 E-value=0.081 Score=53.21 Aligned_cols=44 Identities=20% Similarity=0.229 Sum_probs=29.6
Q ss_pred cchHHHHHHHHHHcC--CCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 157 ESRMFTLRNILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 157 ~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
+|+...+.++.+.+. .....-|.|+|..|+||+++|+.+++...
T Consensus 2 iG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~ 47 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSK 47 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcC
Confidence 344444444444433 12334588999999999999999987654
No 296
>PRK03839 putative kinase; Provisional
Probab=95.65 E-value=0.01 Score=54.13 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.|.|.|++|+||||+++.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999875
No 297
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.65 E-value=0.011 Score=54.24 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
+.++|.|.|++|+||||+++.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 298
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.63 E-value=0.009 Score=49.29 Aligned_cols=24 Identities=46% Similarity=0.735 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 178 LGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
|.|+|++|+|||+||..++.....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 568999999999999998887653
No 299
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.63 E-value=0.16 Score=44.98 Aligned_cols=116 Identities=21% Similarity=0.214 Sum_probs=61.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEE---EEeCCCcCHHHHHHHHH--H--HhCCC--CcCCChhh-----
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVF---VEVSQNQDIRKLQGEIA--D--KLGLK--FHEESESG----- 241 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~w---v~~s~~~~~~~~~~~i~--~--~l~~~--~~~~~~~~----- 241 (559)
..|-|++..|.||||+|....-+.-... + .+.+ +.-........+++.+- . ..+.. ....+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g-~-~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHG-Y-RVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHH
Confidence 5788999999999999999888765442 2 2333 33322334444433330 0 00110 00011111
Q ss_pred --hHHHHHHHHHcCCeEEEEEeCCCcc-----cccchhcCCCCCCCCCcEEEEEecCcc
Q 043056 242 --RANSLFKRIKAEKKILIILDNIWEN-----LDLRVVGIPHGDGHKDCKVLLTARSLD 293 (559)
Q Consensus 242 --~~~~l~~~l~~~kr~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~IivTTR~~~ 293 (559)
......+.+..+.-=|||||++-.. ...+.+...+.....+.-||+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1122233334455569999998433 233344444444445678999999854
No 300
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.61 E-value=0.052 Score=51.61 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
.+++|+||.|.|||||.+.+.--
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999874
No 301
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.61 E-value=0.042 Score=57.66 Aligned_cols=86 Identities=24% Similarity=0.337 Sum_probs=53.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCC--ChhhhHHHHHHHHHc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEE--SESGRANSLFKRIKA 252 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 252 (559)
-.++.|.|++|+|||||+.+++.....+ -..++|++.... ..++.. -++.++...... ........+.+.+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 4589999999999999999998876532 235788876543 333322 245555432211 011224455555555
Q ss_pred CCeEEEEEeCCCc
Q 043056 253 EKKILIILDNIWE 265 (559)
Q Consensus 253 ~kr~LlVlDdv~~ 265 (559)
.+.-++|+|.+..
T Consensus 155 ~~~~lVVIDSIq~ 167 (446)
T PRK11823 155 EKPDLVVIDSIQT 167 (446)
T ss_pred hCCCEEEEechhh
Confidence 5677999999853
No 302
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.60 E-value=0.06 Score=48.33 Aligned_cols=26 Identities=31% Similarity=0.250 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
-.+++|+|+.|.|||||++.+.....
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35899999999999999999987643
No 303
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.60 E-value=0.012 Score=53.15 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
+...|.|+|++|+||||+|+.+.....
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999999874
No 304
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.58 Score=44.08 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=40.5
Q ss_pred ccCCCCCccchHHHHHHHHHHcC-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 149 FNKDYLPFESRMFTLRNILSALE-------------DPDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 149 ~~~~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
+...+..+-|-++.+++|++.+. -..++-+..+||+|.|||-+|+..+.+..
T Consensus 166 PtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~ 230 (424)
T KOG0652|consen 166 PTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN 230 (424)
T ss_pred CcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc
Confidence 34456667788999999998764 12456788999999999999999887654
No 305
>PTZ00494 tuzin-like protein; Provisional
Probab=95.58 E-value=1.3 Score=45.50 Aligned_cols=163 Identities=13% Similarity=0.148 Sum_probs=94.3
Q ss_pred CCCCCccchHHHHHHHHHHc---CCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHH
Q 043056 151 KDYLPFESRMFTLRNILSAL---EDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIA 227 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 227 (559)
.....++.|+.+-..+-..| ....++++.+.|..|.||++|.+....+... ..++|.+.... +.++.|.
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~E---DtLrsVV 439 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGTE---DTLRSVV 439 (664)
T ss_pred cccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCCc---chHHHHH
Confidence 33455778877655444444 3556899999999999999999998887654 36778887654 4577888
Q ss_pred HHhCCCCcCC--ChhhhHHHHHHHH---HcCCeEEEEEeCCCcccc----cchhcCCCCCCCCCcEEEEEecCcch--hc
Q 043056 228 DKLGLKFHEE--SESGRANSLFKRI---KAEKKILIILDNIWENLD----LRVVGIPHGDGHKDCKVLLTARSLDV--LS 296 (559)
Q Consensus 228 ~~l~~~~~~~--~~~~~~~~l~~~l---~~~kr~LlVlDdv~~~~~----~~~l~~~~~~~~~gs~IivTTR~~~v--a~ 296 (559)
+.++.+..+. +..+-+......- ..++.=+||+- +.+... +.+. ..+.+...-|.|++----+.+ +.
T Consensus 440 KALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlk-LREGssL~RVYnE~-vaLacDrRlCHvv~EVplESLT~~n 517 (664)
T PTZ00494 440 RALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMR-LREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKALTPLN 517 (664)
T ss_pred HHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEE-eccCCcHHHHHHHH-HHHHccchhheeeeechHhhhchhh
Confidence 8888764432 1111111111111 12444455542 111111 1111 122233344556654333222 12
Q ss_pred cCCCCCCeeecCCCCHHHHHHHHHHHh
Q 043056 297 GKMDSRPNFSIGVLNEEEAWNLFKKMA 323 (559)
Q Consensus 297 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 323 (559)
...+.-..|.+.+++.++|.+.-.+..
T Consensus 518 ~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 518 VSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred ccCccceeEecCCcCHHHHHHHHhccc
Confidence 234555689999999999999887765
No 306
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.56 E-value=0.013 Score=54.93 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
.+++.|+|+.|.|||||.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999999998743
No 307
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.56 E-value=0.28 Score=47.91 Aligned_cols=129 Identities=11% Similarity=0.016 Sum_probs=72.0
Q ss_pred HHHHHHHcCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhccc------------CCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 043056 163 LRNILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKVKSD------------KLFDQVVFVEVSQNQDIRKLQGEIADK 229 (559)
Q Consensus 163 ~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~------------~~f~~~~wv~~s~~~~~~~~~~~i~~~ 229 (559)
.++|...+..+. .....++|+.|+||+++|..+....--. .|.|..+.........
T Consensus 6 ~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~----------- 74 (290)
T PRK05917 6 WEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRL----------- 74 (290)
T ss_pred HHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCc-----------
Confidence 455666665544 4567799999999999999988875321 2334332211111000
Q ss_pred hCCCCcCCChhhhHHHHHHHHH----cCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEEEecC-cchhccCCCCC
Q 043056 230 LGLKFHEESESGRANSLFKRIK----AEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLLTARS-LDVLSGKMDSR 302 (559)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~-~~va~~~~~~~ 302 (559)
-..+.+..+.+.+. .++.-++|+|+++.. ..+..+...+-...+++.+|++|.+ ..+........
T Consensus 75 --------I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRc 146 (290)
T PRK05917 75 --------HSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRS 146 (290)
T ss_pred --------CcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcc
Confidence 01222233333332 245568889998754 4566665555554556666666665 44433333445
Q ss_pred CeeecCCC
Q 043056 303 PNFSIGVL 310 (559)
Q Consensus 303 ~~~~l~~L 310 (559)
..+.+.++
T Consensus 147 q~~~~~~~ 154 (290)
T PRK05917 147 LSIHIPME 154 (290)
T ss_pred eEEEccch
Confidence 57777765
No 308
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.56 E-value=0.044 Score=61.48 Aligned_cols=180 Identities=17% Similarity=0.230 Sum_probs=90.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh-ccc-------------CCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCC
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKV-KSD-------------KLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEES 238 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~-~~~-------------~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~ 238 (559)
++.+++.|+|+.+.||||+.+.+.-.. ..+ ..|+ .++..++...++..-+..+...
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~-~i~~~ig~~~si~~~lStfS~~--------- 394 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFK-EIFADIGDEQSIEQSLSTFSGH--------- 394 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccc-eEEEecCCccchhhchhHHHHH---------
Confidence 455789999999999999999986441 100 0111 2233333333222211111110
Q ss_pred hhhhHHHHHHHHHcCCeEEEEEeCCCcccccc---hh----cCCCCCCCCCcEEEEEecCcchhccCCCCCC--eeecCC
Q 043056 239 ESGRANSLFKRIKAEKKILIILDNIWENLDLR---VV----GIPHGDGHKDCKVLLTARSLDVLSGKMDSRP--NFSIGV 309 (559)
Q Consensus 239 ~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~---~l----~~~~~~~~~gs~IivTTR~~~va~~~~~~~~--~~~l~~ 309 (559)
......+...+ ..+-|+++|..-...+.. .+ ...+ ...|+.+|+||....+......... ...+.
T Consensus 395 -m~~~~~Il~~~--~~~sLvLlDE~~~GtDp~eg~ala~aile~l--~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~- 468 (782)
T PRK00409 395 -MTNIVRILEKA--DKNSLVLFDELGAGTDPDEGAALAISILEYL--RKRGAKIIATTHYKELKALMYNREGVENASVE- 468 (782)
T ss_pred -HHHHHHHHHhC--CcCcEEEecCCCCCCCHHHHHHHHHHHHHHH--HHCCCEEEEECChHHHHHHHhcCCCeEEEEEE-
Confidence 01122233332 467899999986543311 12 2222 1247889999998766522111111 11111
Q ss_pred CCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHhcCChHHHHHHHHHhcC
Q 043056 310 LNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTIARALRNKRLFEWKDALEQLRR 374 (559)
Q Consensus 310 L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~~l~~ 374 (559)
++. +......+...+... ...|-+|++++ |+|-.|..-|.-+..........++..|..
T Consensus 469 ~d~-~~l~~~Ykl~~G~~g----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~~ 527 (782)
T PRK00409 469 FDE-ETLRPTYRLLIGIPG----KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLEE 527 (782)
T ss_pred Eec-CcCcEEEEEeeCCCC----CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 111 111000000011111 23466777777 889888888888876655677777766543
No 309
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.55 E-value=0.12 Score=49.95 Aligned_cols=90 Identities=19% Similarity=0.278 Sum_probs=56.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc--ccCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCCCC-------cCCChhh----
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVK--SDKLFDQVVFVEVSQNQ-DIRKLQGEIADKLGLKF-------HEESESG---- 241 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~--~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~---- 241 (559)
..++|.|..|+|||+|+..+.+... .++.-+.++++-+++.. ...+++.++...=.... .+++...
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 4689999999999999999887754 12234678888887654 45666666654322111 1111111
Q ss_pred --hHHHHHHHHH-c-CCeEEEEEeCCCc
Q 043056 242 --RANSLFKRIK-A-EKKILIILDNIWE 265 (559)
Q Consensus 242 --~~~~l~~~l~-~-~kr~LlVlDdv~~ 265 (559)
....+-+.+. + +++.|+++||+-.
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 1223444443 2 7899999999854
No 310
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.54 E-value=0.049 Score=49.62 Aligned_cols=115 Identities=19% Similarity=0.263 Sum_probs=59.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEE---eCCCcCHHHH------HHHHHHHhCCCCc------CCCh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVE---VSQNQDIRKL------QGEIADKLGLKFH------EESE 239 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~---~s~~~~~~~~------~~~i~~~l~~~~~------~~~~ 239 (559)
-.+++|.|+.|+|||||++.++..... ..+.+++. +.. .+.... ..++++.++.... .-+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~---~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKP---SSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 368999999999999999999875432 33444432 211 111111 1124555554321 1111
Q ss_pred hh-hHHHHHHHHHcCCeEEEEEeCCCcccc---cchhcCCCCC-CCC-CcEEEEEecCcch
Q 043056 240 SG-RANSLFKRIKAEKKILIILDNIWENLD---LRVVGIPHGD-GHK-DCKVLLTARSLDV 294 (559)
Q Consensus 240 ~~-~~~~l~~~l~~~kr~LlVlDdv~~~~~---~~~l~~~~~~-~~~-gs~IivTTR~~~v 294 (559)
.+ ..-.+...+. ..+-++++|+.-..-+ ...+...+.. ... +..||++|.+...
T Consensus 101 G~~qrl~laral~-~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 101 GERQRVLLARALA-QEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHHHHHHHHHh-cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 11 1122333444 4678999999854322 2222222211 112 5678888887554
No 311
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.18 Score=53.87 Aligned_cols=174 Identities=17% Similarity=0.237 Sum_probs=92.3
Q ss_pred CCCccchHH---HHHHHHHHcCCCC---------ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHH
Q 043056 153 YLPFESRMF---TLRNILSALEDPD---------VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIR 220 (559)
Q Consensus 153 ~~~~~gR~~---~~~~l~~~L~~~~---------~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 220 (559)
+..+.|.++ ++.++++.|.++. ++=+.++||+|+|||.||+.+.....+- | .+.|...
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSGS~--- 218 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGSD--- 218 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--c-----eeccchh---
Confidence 445567655 4556667776432 4668899999999999999999887764 2 1222210
Q ss_pred HHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc------------cc----chhcCCCCC--CCCC
Q 043056 221 KLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL------------DL----RVVGIPHGD--GHKD 282 (559)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~------------~~----~~l~~~~~~--~~~g 282 (559)
..+.+- .-.......+...-++.-++++++|.++... .+ .++..-... .+.|
T Consensus 219 -----FVemfV-----GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~g 288 (596)
T COG0465 219 -----FVEMFV-----GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEG 288 (596)
T ss_pred -----hhhhhc-----CCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCc
Confidence 111110 0112234445555554568999999886431 12 222222211 2234
Q ss_pred cEEEEEecCcchh-ccCC---CCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH
Q 043056 283 CKVLLTARSLDVL-SGKM---DSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPV 348 (559)
Q Consensus 283 s~IivTTR~~~va-~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 348 (559)
..|+..|...+|. ...+ .-...+.++.-+-..-.++++-++......+. .+ ...|++.+-|.-.
T Consensus 289 viviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~-Vd-l~~iAr~tpGfsG 356 (596)
T COG0465 289 VIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAED-VD-LKKIARGTPGFSG 356 (596)
T ss_pred eEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCc-CC-HHHHhhhCCCccc
Confidence 4444445555554 1112 22346666666666666666655543222221 11 2237777777654
No 312
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.53 E-value=0.03 Score=51.17 Aligned_cols=47 Identities=26% Similarity=0.302 Sum_probs=33.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEI 226 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 226 (559)
..+|+|-||=|+||||||+.+.++.+.. .++-.+.+++-+.....++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~-----~~~E~vednp~L~~FY~d~ 50 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFK-----VFYELVEDNPFLDLFYEDP 50 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCc-----eeeecccCChHHHHHHHhH
Confidence 4789999999999999999999988743 2333444554444444444
No 313
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.52 E-value=0.016 Score=54.39 Aligned_cols=26 Identities=31% Similarity=0.685 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
++|+|.|-||+||||++..++.....
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~ 26 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAE 26 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHH
Confidence 47899999999999999988877654
No 314
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.51 E-value=0.039 Score=53.60 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
+.|.|+|.+|+||||+|+++......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 46899999999999999999998765
No 315
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.46 E-value=0.087 Score=47.16 Aligned_cols=118 Identities=15% Similarity=0.121 Sum_probs=63.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCe--EEEEEeCCCcCHHHHHHHHH---HHhCCC--CcCCChh---hh--
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQ--VVFVEVSQNQDIRKLQGEIA---DKLGLK--FHEESES---GR-- 242 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~--~~wv~~s~~~~~~~~~~~i~---~~l~~~--~~~~~~~---~~-- 242 (559)
...|-|++..|.||||.|..+.-+..... +.. +-|+.-.........+..+. .+.+.. +...+.. ..
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g-~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHG-KKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCC-CeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 46788999999999999999888765442 222 12444332334444443320 001111 1111111 11
Q ss_pred --HHHHHHHHHcCCeEEEEEeCCCcc-----cccchhcCCCCCCCCCcEEEEEecCcc
Q 043056 243 --ANSLFKRIKAEKKILIILDNIWEN-----LDLRVVGIPHGDGHKDCKVLLTARSLD 293 (559)
Q Consensus 243 --~~~l~~~l~~~kr~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~IivTTR~~~ 293 (559)
.....+.+..+.-=|||||.+-.. -..+.+...+.....+.-||+|-|+..
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 223334444455569999998533 233344444444455678999999753
No 316
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.45 E-value=0.057 Score=59.66 Aligned_cols=84 Identities=18% Similarity=0.264 Sum_probs=55.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcC------CChhhhHHHHH
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHE------ESESGRANSLF 247 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~ 247 (559)
.-+++-|+|++|+|||||+.+++...... =..++|+.....++. ..+++++.+... .+.......+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 34788899999999999998876654332 245789988877764 367777765331 11222222233
Q ss_pred HHHHcCCeEEEEEeCCC
Q 043056 248 KRIKAEKKILIILDNIW 264 (559)
Q Consensus 248 ~~l~~~kr~LlVlDdv~ 264 (559)
..+..++.-|||+|.+.
T Consensus 132 ~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 132 MLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHhhcCCCeEEEEcchh
Confidence 33344567799999985
No 317
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.43 E-value=0.082 Score=55.09 Aligned_cols=88 Identities=22% Similarity=0.387 Sum_probs=56.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCCC-------CcCCChhh------
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQ-DIRKLQGEIADKLGLK-------FHEESESG------ 241 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~------ 241 (559)
..++|.|.+|+|||||+.++.+....+ +-+.++++-++... ...++..++...-... ..+.+...
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~ 222 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL 222 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHH
Confidence 469999999999999999988877644 56778888776543 4556666665432211 11112111
Q ss_pred hHHHHHHHHH-c-CCeEEEEEeCCC
Q 043056 242 RANSLFKRIK-A-EKKILIILDNIW 264 (559)
Q Consensus 242 ~~~~l~~~l~-~-~kr~LlVlDdv~ 264 (559)
.+..+.+.+. + ++++||++|++-
T Consensus 223 ~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 223 TGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHhcCCceEEEeccch
Confidence 1223444443 2 799999999994
No 318
>PRK04040 adenylate kinase; Provisional
Probab=95.41 E-value=0.015 Score=53.39 Aligned_cols=26 Identities=27% Similarity=0.538 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.++|.|+|++|+||||+++.+.....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 36899999999999999999998874
No 319
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.41 E-value=0.071 Score=56.74 Aligned_cols=86 Identities=16% Similarity=0.236 Sum_probs=53.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcC----------------C
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHE----------------E 237 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----------------~ 237 (559)
.-.++.|.|++|+|||||+.++......+ -..+++++.... ..++.... +.++.+... .
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eEs--~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEES--RAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeCC--HHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccC
Confidence 34689999999999999999998876443 245677765543 44444443 445433211 1
Q ss_pred ChhhhHHHHHHHHHcCCeEEEEEeCCC
Q 043056 238 SESGRANSLFKRIKAEKKILIILDNIW 264 (559)
Q Consensus 238 ~~~~~~~~l~~~l~~~kr~LlVlDdv~ 264 (559)
...+.+..+.+.+...+.-.+|+|.+.
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 113345555555554456677888774
No 320
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.40 E-value=0.057 Score=53.62 Aligned_cols=38 Identities=24% Similarity=0.457 Sum_probs=29.3
Q ss_pred HHHHHcC--CCCceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 043056 165 NILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKVKSD 202 (559)
Q Consensus 165 ~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (559)
.+++.+. .+...+|+|.|++|+|||||+..+.......
T Consensus 22 ~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 22 QLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred HHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3444443 3567899999999999999999998876544
No 321
>COG4240 Predicted kinase [General function prediction only]
Probab=95.37 E-value=0.11 Score=47.75 Aligned_cols=82 Identities=13% Similarity=0.159 Sum_probs=51.7
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCC-----CCcCCChhhhHHHH
Q 043056 172 DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGL-----KFHEESESGRANSL 246 (559)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~l 246 (559)
.+++-+++|.|+-|+||||++..+++....+.. ..+...++..-+-...-.-.++++... ...+..+......+
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 456789999999999999999999999876643 356665554433323333344444311 12233445566667
Q ss_pred HHHHHcCC
Q 043056 247 FKRIKAEK 254 (559)
Q Consensus 247 ~~~l~~~k 254 (559)
++.+.+++
T Consensus 126 Lnai~~g~ 133 (300)
T COG4240 126 LNAIARGG 133 (300)
T ss_pred HHHHhcCC
Confidence 77776555
No 322
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.36 E-value=0.11 Score=53.62 Aligned_cols=88 Identities=18% Similarity=0.293 Sum_probs=52.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCCC-------CcCCChhh----
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQ-DIRKLQGEIADKLGLK-------FHEESESG---- 241 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 241 (559)
.-..++|.|..|+|||||++.+++... .+.++++-++... ...++..+.+..-+.. ..+.+...
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 346789999999999999999987654 3455566665543 3445554444332221 11111111
Q ss_pred --hHHHHHHHH-HcCCeEEEEEeCCCc
Q 043056 242 --RANSLFKRI-KAEKKILIILDNIWE 265 (559)
Q Consensus 242 --~~~~l~~~l-~~~kr~LlVlDdv~~ 265 (559)
....+.+.+ .+++.+||++||+-.
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 122334444 248999999999943
No 323
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.36 E-value=0.034 Score=46.63 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=30.9
Q ss_pred ccchHHHHHHHHH----HcC---CCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 156 FESRMFTLRNILS----ALE---DPDVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 156 ~~gR~~~~~~l~~----~L~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
++|-.-..+.+++ .+. .+++-|++.+|++|+|||.+++.+++..
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4554444444444 443 3456799999999999999999988873
No 324
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.34 E-value=0.042 Score=52.10 Aligned_cols=49 Identities=22% Similarity=0.260 Sum_probs=31.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHH
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGE 225 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 225 (559)
.-.++.|.|++|+|||+|+.++....-.+ .=..++|++....+ .++.+.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~-~ge~vlyvs~ee~~--~~l~~~ 66 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN-FGEKVLYVSFEEPP--EELIEN 66 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH-HT--EEEEESSS-H--HHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh-cCCcEEEEEecCCH--HHHHHH
Confidence 34689999999999999999977554222 01257888876543 444443
No 325
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.34 E-value=0.063 Score=55.31 Aligned_cols=87 Identities=18% Similarity=0.313 Sum_probs=52.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCCC-------CcCCChhh-----
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQ-DIRKLQGEIADKLGLK-------FHEESESG----- 241 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~----- 241 (559)
-..++|.|+.|+|||||++.+..... .+.++.+-+++.. .+.++..+++..-+.. ..+.+...
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 35799999999999999999886432 3566666666554 3455555554432211 11111111
Q ss_pred -hHHHHHHHH-HcCCeEEEEEeCCCc
Q 043056 242 -RANSLFKRI-KAEKKILIILDNIWE 265 (559)
Q Consensus 242 -~~~~l~~~l-~~~kr~LlVlDdv~~ 265 (559)
.+..+.+.+ .+++++||++||+-.
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 122233333 248999999999843
No 326
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.34 E-value=0.012 Score=54.59 Aligned_cols=23 Identities=43% Similarity=0.741 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
+|+|.|++|+|||||++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 327
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.34 E-value=0.032 Score=60.68 Aligned_cols=78 Identities=14% Similarity=0.139 Sum_probs=58.2
Q ss_pred CCCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHh
Q 043056 151 KDYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKL 230 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 230 (559)
.....+.|.+..++.|...+..+ +.+.++|++|+||||+|+.+.+.... .+++..+|..- ...+...+++.+...+
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~~-~~~~~~~~~~n-p~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLPK-EELQDILVYPN-PEDPNNPKIRTVPAGK 103 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcCh-HhHHHheEeeC-CCcchHHHHHHHHHhc
Confidence 44556889888888888777644 47999999999999999999987543 34677788655 4446777777777766
Q ss_pred CC
Q 043056 231 GL 232 (559)
Q Consensus 231 ~~ 232 (559)
|.
T Consensus 104 G~ 105 (637)
T PRK13765 104 GK 105 (637)
T ss_pred CH
Confidence 54
No 328
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.33 E-value=0.015 Score=52.90 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.++.|.|++|+|||||++.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 329
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.33 E-value=0.046 Score=51.79 Aligned_cols=34 Identities=29% Similarity=0.326 Sum_probs=22.4
Q ss_pred HHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 164 RNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 164 ~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
+.+...+..+. +..|+||+|+||||++..+....
T Consensus 8 ~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 8 EAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHh
Confidence 34444443322 78999999999998777777766
No 330
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.33 E-value=0.022 Score=60.53 Aligned_cols=56 Identities=20% Similarity=0.262 Sum_probs=42.1
Q ss_pred CCccchHHHHHHHHHHcC-----CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEe
Q 043056 154 LPFESRMFTLRNILSALE-----DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEV 213 (559)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 213 (559)
..+.-..+.++++..||. ....+++.+.||+|+||||.++.+++... |+.+=|.+.
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~np 79 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWINP 79 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecCC
Confidence 344555667777777776 23357999999999999999999998865 666777644
No 331
>PF13245 AAA_19: Part of AAA domain
Probab=95.32 E-value=0.044 Score=41.93 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=18.6
Q ss_pred CceEEEEEcCCCCcHHHHHH-HHHHHh
Q 043056 174 DVNMLGIYGMGGIGKTMLAE-EVARKV 199 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~-~v~~~~ 199 (559)
+.+++.|.|++|+|||+++. .+.+..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34678889999999995544 444444
No 332
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.32 E-value=0.072 Score=55.97 Aligned_cols=86 Identities=22% Similarity=0.285 Sum_probs=52.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCC--ChhhhHHHHHHHHHc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEE--SESGRANSLFKRIKA 252 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 252 (559)
-.++.|.|.+|+|||||+.++........ ..++|++.... ..++.. -+..++...... -.......+.+.+.+
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g--~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~~e~~~~~I~~~i~~ 168 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQ--MKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVLSETNWEQICANIEE 168 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEcCCCCHHHHHHHHHh
Confidence 46899999999999999999987654331 35778876543 333322 123444322110 011223455556655
Q ss_pred CCeEEEEEeCCCc
Q 043056 253 EKKILIILDNIWE 265 (559)
Q Consensus 253 ~kr~LlVlDdv~~ 265 (559)
.+.-++|+|.+..
T Consensus 169 ~~~~~vVIDSIq~ 181 (454)
T TIGR00416 169 ENPQACVIDSIQT 181 (454)
T ss_pred cCCcEEEEecchh
Confidence 5677899999853
No 333
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.27 E-value=0.022 Score=53.76 Aligned_cols=62 Identities=23% Similarity=0.293 Sum_probs=40.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEE-------EeCCCcCHHHH--HHHHHHHhCCCCc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFV-------EVSQNQDIRKL--QGEIADKLGLKFH 235 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv-------~~s~~~~~~~~--~~~i~~~l~~~~~ 235 (559)
.+..|.++||+|+||||..+.++.+...+.....++-+ ...-+.++++. .++..++.++.+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPN 88 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPN 88 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCC
Confidence 45688999999999999999999988765332222221 11223455544 4567777655443
No 334
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.27 E-value=0.16 Score=50.74 Aligned_cols=39 Identities=26% Similarity=0.468 Sum_probs=30.3
Q ss_pred HHHHHHcC--CCCceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 043056 164 RNILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKVKSD 202 (559)
Q Consensus 164 ~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (559)
..|++.+. .+...+|+|.|++|+|||||+..+.......
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 34444443 4567899999999999999999988887654
No 335
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.26 E-value=0.02 Score=51.38 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=25.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSD 202 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (559)
...+++|+|+.|+|||||+..+......+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 45799999999999999999999887643
No 336
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.26 E-value=0.026 Score=51.63 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=29.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeC
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVS 214 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 214 (559)
.++|.|+|++|+|||||+..+....... |...+..+-.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~--~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDK--FGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTT--EEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccc--cccceeeccc
Confidence 4789999999999999999999976643 6555554443
No 337
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.24 E-value=0.017 Score=52.44 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
++|.+.|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988753
No 338
>PRK13236 nitrogenase reductase; Reviewed
Probab=95.24 E-value=0.028 Score=55.75 Aligned_cols=43 Identities=21% Similarity=0.466 Sum_probs=31.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCC
Q 043056 172 DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQN 216 (559)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 216 (559)
+.+.++|++.|-||+||||++..+..-....+ + .+.-+.....
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~La~~G-~-rVLliD~D~q 45 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAMAEMG-Q-RILIVGCDPK 45 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHHHHCC-C-cEEEEEccCC
Confidence 45679999999999999999999888766542 2 3444544433
No 339
>PRK00625 shikimate kinase; Provisional
Probab=95.23 E-value=0.018 Score=52.03 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.|.++|++|+||||+++.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999988765
No 340
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.22 E-value=0.015 Score=53.18 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 341
>PRK06217 hypothetical protein; Validated
Probab=95.22 E-value=0.018 Score=52.69 Aligned_cols=34 Identities=24% Similarity=0.425 Sum_probs=26.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCC--CeEEEE
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVKSDKLF--DQVVFV 211 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv 211 (559)
.|.|.|.+|+||||+|+.+....... ++ |..+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~-~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIP-HLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc-EEEcCceeec
Confidence 58999999999999999999987542 33 445553
No 342
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.20 E-value=0.042 Score=50.93 Aligned_cols=42 Identities=26% Similarity=0.536 Sum_probs=30.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCH
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDI 219 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 219 (559)
.|+|+|-||+||||+|..+....-.++.| .++-|....++++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~-~VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGY-NVLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCc-eEEEEeCCCCCCh
Confidence 68999999999999999966665554333 3555666666554
No 343
>PHA02774 E1; Provisional
Probab=95.20 E-value=0.044 Score=57.97 Aligned_cols=50 Identities=28% Similarity=0.385 Sum_probs=35.7
Q ss_pred HHHHHHHHcCC-CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCC
Q 043056 162 TLRNILSALED-PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQ 215 (559)
Q Consensus 162 ~~~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 215 (559)
-+..|..++.. ++..-+.|+||+|+|||.+|..+.+-.. -..+.|++...
T Consensus 420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~----G~vi~fvN~~s 470 (613)
T PHA02774 420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK----GKVISFVNSKS 470 (613)
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC----CCEEEEEECcc
Confidence 44555566653 3346899999999999999999998764 23466776543
No 344
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.17 E-value=0.1 Score=54.10 Aligned_cols=87 Identities=18% Similarity=0.269 Sum_probs=49.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhC-----CC-CcCCChhh------hH
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLG-----LK-FHEESESG------RA 243 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~-----~~-~~~~~~~~------~~ 243 (559)
..++|+|++|+|||||++.+...... ...++++.-....++.++....+.... .- ..+.+... ..
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~~p---d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a 242 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARADAF---DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTA 242 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCC---CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 57999999999999999888764432 224455443344455555444443321 10 11111111 12
Q ss_pred HHHHHHH-HcCCeEEEEEeCCCc
Q 043056 244 NSLFKRI-KAEKKILIILDNIWE 265 (559)
Q Consensus 244 ~~l~~~l-~~~kr~LlVlDdv~~ 265 (559)
..+-+.+ .+++.+|+++||+-.
T Consensus 243 ~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 243 TAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHcCCCEEEeccchHH
Confidence 2233333 248999999999843
No 345
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=95.16 E-value=0.15 Score=50.88 Aligned_cols=47 Identities=21% Similarity=0.370 Sum_probs=35.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCc-CHHHHHHHH
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQ-DIRKLQGEI 226 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i 226 (559)
..++|.|+.|+|||+|++++.+... -+.++++-+++.. .+.+++.++
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~~~----~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKYSN----SDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhCCC----CCEEEEEEeCCChHHHHHHHHHH
Confidence 4799999999999999999988643 4578888887653 445555554
No 346
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.14 E-value=0.049 Score=54.75 Aligned_cols=46 Identities=17% Similarity=0.191 Sum_probs=34.1
Q ss_pred CCccchHHHHHHHHHHcC--CCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 154 LPFESRMFTLRNILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
..++|+...+.++.+.+. .....-|.|+|..|+||+++|+.++...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s 53 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhC
Confidence 347787777777666554 2233468899999999999999998653
No 347
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.12 E-value=0.055 Score=47.30 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
-.+++|.|+.|.|||||++.+.....
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 36899999999999999999877543
No 348
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.11 E-value=0.04 Score=47.12 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=24.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
-.+|.+.|.-|+||||+++.+......
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 358999999999999999999998654
No 349
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.10 E-value=0.017 Score=50.41 Aligned_cols=24 Identities=33% Similarity=0.564 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
+|.|.|++|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 350
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.09 E-value=0.017 Score=50.93 Aligned_cols=23 Identities=22% Similarity=0.603 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
++.+.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998864
No 351
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.09 E-value=0.021 Score=48.83 Aligned_cols=35 Identities=31% Similarity=0.417 Sum_probs=27.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCC
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQN 216 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 216 (559)
.+-|.|.|-+|+||||++..++....- -|+++|.-
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~-------~~i~isd~ 41 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGL-------EYIEISDL 41 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCC-------ceEehhhH
Confidence 356889999999999999999976542 36666653
No 352
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.09 E-value=0.017 Score=52.68 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
++|+|+|++|+|||||++.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999999854
No 353
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.08 E-value=0.068 Score=59.63 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=35.9
Q ss_pred CCCccchHHHHHHHHHHcC--CCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 153 YLPFESRMFTLRNILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
...++|+...+..+.+.+. ......|.|+|..|+|||++|+.+++...
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~ 424 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG 424 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence 3457888777777665543 23335688999999999999999998654
No 354
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.07 E-value=0.018 Score=52.44 Aligned_cols=25 Identities=32% Similarity=0.639 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
+|+|.|.+|+||||||..+......
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988753
No 355
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=95.07 E-value=0.027 Score=55.27 Aligned_cols=40 Identities=25% Similarity=0.424 Sum_probs=28.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQ 217 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 217 (559)
++|+|.|-||+||||++..+.......+ + .+.-|......
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G-~-rVLlID~Dpq~ 41 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMG-K-KVMVVGCDPKA 41 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCC-C-cEEEEecCCcc
Confidence 5788999999999999999888765432 2 34455554433
No 356
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.05 E-value=0.035 Score=53.96 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=36.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCc
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQ 217 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 217 (559)
+.-+++.|+|.+|+|||+++.++....... ...++||+....+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~~ 63 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEESP 63 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCCH
Confidence 455799999999999999999999887654 7789999887653
No 357
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.04 E-value=0.027 Score=52.01 Aligned_cols=47 Identities=26% Similarity=0.416 Sum_probs=32.5
Q ss_pred HHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEE
Q 043056 164 RNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVE 212 (559)
Q Consensus 164 ~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 212 (559)
...++.|. ...++.+.|++|+|||.||....-+.-..+.|+.++++.
T Consensus 10 ~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 10 KFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp HHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred HHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 33444444 446899999999999999999987765557788888773
No 358
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=95.03 E-value=0.027 Score=55.21 Aligned_cols=26 Identities=31% Similarity=0.695 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
++|+|+|-||+||||++..+..-...
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~ 27 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALST 27 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 57888899999999999998887654
No 359
>PRK08149 ATP synthase SpaL; Validated
Probab=95.02 E-value=0.13 Score=53.11 Aligned_cols=87 Identities=15% Similarity=0.261 Sum_probs=51.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCC-CcCHHHHHHHHHHHhCCC-------CcCCChhh-----
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQ-NQDIRKLQGEIADKLGLK-------FHEESESG----- 241 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 241 (559)
-..++|.|++|+|||||+..++.... .+.++...+.. ..++.++..+........ ..+.+...
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 35789999999999999998887543 34444444443 345556666665543221 11111111
Q ss_pred -hHHHHHHHH-HcCCeEEEEEeCCCc
Q 043056 242 -RANSLFKRI-KAEKKILIILDNIWE 265 (559)
Q Consensus 242 -~~~~l~~~l-~~~kr~LlVlDdv~~ 265 (559)
....+.+.+ .++|++||++||+-.
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccchHH
Confidence 122333444 248999999999843
No 360
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.01 E-value=0.042 Score=48.61 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=27.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 043056 172 DPDVNMLGIYGMGGIGKTMLAEEVARKVKSD 202 (559)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (559)
..+..+|.+.|.+|+||||+|..++......
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHc
Confidence 4566799999999999999999999988754
No 361
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.99 E-value=0.028 Score=50.98 Aligned_cols=28 Identities=29% Similarity=0.428 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
...+|.|.|++|+||||+|+.+......
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999998754
No 362
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.99 E-value=0.24 Score=47.03 Aligned_cols=41 Identities=27% Similarity=0.345 Sum_probs=30.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCC
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQN 216 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 216 (559)
.-.++.|.|++|+|||||+.++......+ -..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccCC
Confidence 34689999999999999999877653322 346788887543
No 363
>PRK15453 phosphoribulokinase; Provisional
Probab=94.98 E-value=0.16 Score=49.09 Aligned_cols=28 Identities=14% Similarity=0.361 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.+..+|+|.|.+|+||||+++.+.+..+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3567999999999999999999987664
No 364
>PRK14527 adenylate kinase; Provisional
Probab=94.97 E-value=0.027 Score=51.93 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
....+|.|+|++|+||||+|+.+.+....
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~ 32 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGL 32 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34578999999999999999999887653
No 365
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.97 E-value=0.029 Score=53.09 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
..|.|.|++|+||||+|+.+.....
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3489999999999999999988764
No 366
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.95 E-value=0.086 Score=47.44 Aligned_cols=81 Identities=17% Similarity=0.179 Sum_probs=43.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCC---ChhhhHHHHHHHHHc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEE---SESGRANSLFKRIKA 252 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~l~~~l~~ 252 (559)
+++.|.|.+|+||||+|..+...... .++++.-.... -.+..+.|........... .....+..+.....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~-----~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~- 74 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGL-----QVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADA- 74 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCC-----CcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhc-
Confidence 36899999999999999999876432 23444433333 3344455544332222111 11112233333322
Q ss_pred CCeEEEEEeCC
Q 043056 253 EKKILIILDNI 263 (559)
Q Consensus 253 ~kr~LlVlDdv 263 (559)
.+.-++++|.+
T Consensus 75 ~~~~~VlID~L 85 (170)
T PRK05800 75 APGRCVLVDCL 85 (170)
T ss_pred CCCCEEEehhH
Confidence 22337888887
No 367
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.95 E-value=0.024 Score=52.90 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
-.+|+|+|++|+|||||++.+....
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999864
No 368
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.94 E-value=0.15 Score=48.76 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
+-.|+|++|+|||+|+.+++....
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999987643
No 369
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.93 E-value=0.044 Score=55.03 Aligned_cols=47 Identities=17% Similarity=0.231 Sum_probs=38.9
Q ss_pred CCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 153 YLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
+..++|.+..+..|+-.+.++...-+.|.|+.|+|||||++.+..-.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 44578988888888776667667778899999999999999998654
No 370
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.90 E-value=0.02 Score=49.63 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.|+|+|++|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999864
No 371
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.90 E-value=0.042 Score=54.54 Aligned_cols=48 Identities=23% Similarity=0.271 Sum_probs=42.2
Q ss_pred CCccchHHHHHHHHHHcC------CCCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 154 LPFESRMFTLRNILSALE------DPDVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
..|+|-++.++++++.+. +...+++.++||.|.|||||+..+.+-.+.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~ 114 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE 114 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe
Confidence 368999999999999886 456789999999999999999999987764
No 372
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.88 E-value=0.025 Score=51.79 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
..++|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998754
No 373
>PLN02165 adenylate isopentenyltransferase
Probab=94.86 E-value=0.035 Score=55.02 Aligned_cols=30 Identities=23% Similarity=0.383 Sum_probs=25.5
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 171 EDPDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 171 ~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.+....+|+|+|+.|+||||||..++....
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 345556999999999999999999998754
No 374
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.86 E-value=0.017 Score=48.56 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhccc
Q 043056 178 LGIYGMGGIGKTMLAEEVARKVKSD 202 (559)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~~~ 202 (559)
|.|+|.+|+||||+|+.++......
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~ 26 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLS 26 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--
T ss_pred EeeECCCccHHHHHHHHHHHHcCCc
Confidence 6799999999999999999987643
No 375
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.86 E-value=0.042 Score=48.61 Aligned_cols=34 Identities=18% Similarity=0.368 Sum_probs=28.3
Q ss_pred HHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 163 LRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 163 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
+++|.+++.+ +++.++|.+|+|||||...+....
T Consensus 26 ~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 26 IEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 5677777743 789999999999999999988764
No 376
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.84 E-value=0.082 Score=53.96 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=33.7
Q ss_pred ccchHHHHHHHHHHcCC--------------CCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 156 FESRMFTLRNILSALED--------------PDVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 156 ~~gR~~~~~~l~~~L~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
++|.++..+.+.-.+.. ..++-|.++|++|+|||++|+.+......
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~ 73 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA 73 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 66766666665443331 12467899999999999999999998754
No 377
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.82 E-value=0.044 Score=50.83 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=25.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 172 DPDVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
.++..+|.|+|++|+||||||+.+......
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 356689999999999999999999987643
No 378
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=94.82 E-value=0.15 Score=53.17 Aligned_cols=90 Identities=17% Similarity=0.236 Sum_probs=55.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCC--CeEEEEEeCCC-cCHHHHHHHHHHHhCCCC-------cCCChhh----
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLF--DQVVFVEVSQN-QDIRKLQGEIADKLGLKF-------HEESESG---- 241 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~---- 241 (559)
..++|.|..|+|||||+..+.+.....+.+ ..++++-+++. ..+.+++.++...-.... .+.+...
T Consensus 142 QR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a 221 (458)
T TIGR01041 142 QKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVT 221 (458)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHH
Confidence 468999999999999999999876532111 15666666654 445666666654322211 1111111
Q ss_pred --hHHHHHHHHH--cCCeEEEEEeCCCc
Q 043056 242 --RANSLFKRIK--AEKKILIILDNIWE 265 (559)
Q Consensus 242 --~~~~l~~~l~--~~kr~LlVlDdv~~ 265 (559)
....+.+.+. +++++||++||+-.
T Consensus 222 ~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 222 PRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 2234555555 58999999999943
No 379
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.81 E-value=0.13 Score=49.36 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
+|+|.|.+|+||||+++.+....+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999987754
No 380
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.81 E-value=0.18 Score=52.08 Aligned_cols=89 Identities=16% Similarity=0.245 Sum_probs=56.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccc-----------CCCCeEEEEEeCCCcCHHHHHHHHHHHhC-CCC-------cC
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSD-----------KLFDQVVFVEVSQNQDIRKLQGEIADKLG-LKF-------HE 236 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~-----------~~f~~~~wv~~s~~~~~~~~~~~i~~~l~-~~~-------~~ 236 (559)
.-++|.|.+|+|||||+.++.+..... +.=..++++-+++.....+.+.+.+..-+ ... .+
T Consensus 142 QRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd 221 (466)
T TIGR01040 142 QKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAN 221 (466)
T ss_pred CeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCC
Confidence 468999999999999999998876510 01115677778877666666666655544 211 11
Q ss_pred CChhh------hHHHHHHHHH--cCCeEEEEEeCCC
Q 043056 237 ESESG------RANSLFKRIK--AEKKILIILDNIW 264 (559)
Q Consensus 237 ~~~~~------~~~~l~~~l~--~~kr~LlVlDdv~ 264 (559)
.+... ....+.+.+. +++++||++||+-
T Consensus 222 ~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslT 257 (466)
T TIGR01040 222 DPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMS 257 (466)
T ss_pred CCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChH
Confidence 11111 1223455555 4799999999994
No 381
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=94.80 E-value=0.038 Score=54.35 Aligned_cols=41 Identities=27% Similarity=0.446 Sum_probs=30.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcC
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQD 218 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 218 (559)
++|+|+|-||+||||++..+.......+ + .++-|......+
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G-~-rVLliD~Dpq~n 42 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESG-K-KVLVVGCDPKAD 42 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCC-C-EEEEEeeCCccc
Confidence 5789999999999999999888776432 2 455665554433
No 382
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.80 E-value=0.037 Score=55.64 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=41.6
Q ss_pred CCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 152 DYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
++..++|-++.+..|+..+.++...-|.|.|+.|+||||+|+.+++-..
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4556889998888888877788888888999999999999999987654
No 383
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.80 E-value=0.089 Score=52.12 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=41.8
Q ss_pred CccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHH
Q 043056 155 PFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKL 222 (559)
Q Consensus 155 ~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~ 222 (559)
.++=..+....++.++..+ +.|.|.|++|+||||+|+.++...... .+.|.++...+..++
T Consensus 46 ~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~~~-----~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLNWP-----CVRVNLDSHVSRIDL 106 (327)
T ss_pred CccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHCCC-----eEEEEecCCCChhhc
Confidence 3444445566677777543 469999999999999999999987632 335555555554443
No 384
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.77 E-value=0.023 Score=50.09 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 043056 176 NMLGIYGMGGIGKTMLAEEVA 196 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~ 196 (559)
+.|+|.|.+|+||||++..+.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH
Confidence 368999999999999999988
No 385
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.76 E-value=0.027 Score=45.99 Aligned_cols=22 Identities=45% Similarity=0.383 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVA 196 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~ 196 (559)
-..++|.|++|+|||||+..+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3689999999999999999976
No 386
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.76 E-value=0.041 Score=48.69 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=27.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEE
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVE 212 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 212 (559)
+++|+|+.|+|||||+..+....+.+ .+...+.-+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~-G~~V~viK~ 35 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR-GYRVATIKH 35 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEec
Confidence 58899999999999999999987654 354444433
No 387
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.75 E-value=0.15 Score=52.86 Aligned_cols=89 Identities=20% Similarity=0.381 Sum_probs=56.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCCC-------CcCCChhh------
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQ-DIRKLQGEIADKLGLK-------FHEESESG------ 241 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~------ 241 (559)
..++|.|.+|+|||+|+.++....... +-+.++|+-++... ...++.+++...-... ..+.+...
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~~~-~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~ 217 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMVGQ-HQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGH 217 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHH
Confidence 468999999999999999988775433 34678888886654 4456666655432111 11111111
Q ss_pred hHHHHHHHHH--cCCeEEEEEeCCCc
Q 043056 242 RANSLFKRIK--AEKKILIILDNIWE 265 (559)
Q Consensus 242 ~~~~l~~~l~--~~kr~LlVlDdv~~ 265 (559)
.+..+.+.+. +++++||++||+-.
T Consensus 218 ~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 218 TALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHhcCCceEEEecChHH
Confidence 2234455554 37999999999943
No 388
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.74 E-value=0.026 Score=51.66 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=26.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEE
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVE 212 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 212 (559)
-.+++|.||+|+|||||.+.+..-...+ .+.+|+.
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~ 62 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVD 62 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEEC
Confidence 3689999999999999999987655432 3566663
No 389
>PRK13947 shikimate kinase; Provisional
Probab=94.74 E-value=0.027 Score=50.83 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
.|.|+|++|+||||+|+.+.+....
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999998753
No 390
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.72 E-value=0.022 Score=50.94 Aligned_cols=22 Identities=27% Similarity=0.610 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 043056 178 LGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~ 199 (559)
|.|+|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999875
No 391
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.72 E-value=0.087 Score=48.60 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
.+|+|.|+.|+||||+++.+.+....
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 36899999999999999999998753
No 392
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.70 E-value=0.035 Score=51.91 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=26.8
Q ss_pred cCCCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 170 LEDPDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 170 L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
+...++++|+++|+.|+|||||...+.+...
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3356899999999999999999999988753
No 393
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.69 E-value=0.25 Score=51.72 Aligned_cols=90 Identities=17% Similarity=0.190 Sum_probs=52.7
Q ss_pred eEEEEEcCCCCcHHHHH-HHHHHHhcc-----cCCCCeEEEEEeCCCcCHHHHHHHHHHHhC-CCC-------cCCChhh
Q 043056 176 NMLGIYGMGGIGKTMLA-EEVARKVKS-----DKLFDQVVFVEVSQNQDIRKLQGEIADKLG-LKF-------HEESESG 241 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa-~~v~~~~~~-----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~-~~~-------~~~~~~~ 241 (559)
..++|.|..|+|||+|| ..+.+.... .+.-+.++++-+++..+...-+.+.++.-+ ... .+++...
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~ 269 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGL 269 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHH
Confidence 46889999999999997 556666522 123456888888877644332444444433 111 1111111
Q ss_pred ------hHHHHHHHH-HcCCeEEEEEeCCCc
Q 043056 242 ------RANSLFKRI-KAEKKILIILDNIWE 265 (559)
Q Consensus 242 ------~~~~l~~~l-~~~kr~LlVlDdv~~ 265 (559)
....+-+.+ .+++..|+|+||+-.
T Consensus 270 r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 270 QYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 122233333 248999999999953
No 394
>PRK13949 shikimate kinase; Provisional
Probab=94.68 E-value=0.03 Score=50.40 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.|.|+|+.|+||||+++.++....
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998875
No 395
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.68 E-value=0.031 Score=49.43 Aligned_cols=29 Identities=41% Similarity=0.650 Sum_probs=26.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccC
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDK 203 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~ 203 (559)
.++++|+|+.|+|||||...+....+.++
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G 30 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARG 30 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCC
Confidence 47899999999999999999999988764
No 396
>PRK13975 thymidylate kinase; Provisional
Probab=94.67 E-value=0.031 Score=51.64 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=23.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
.+|+|.|+.|+||||+++.+......
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999998764
No 397
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.67 E-value=0.03 Score=46.86 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 178 LGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
|.|+|..|+|||||.+.+......
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 789999999999999999976543
No 398
>PRK14530 adenylate kinase; Provisional
Probab=94.67 E-value=0.03 Score=52.73 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
+.|.|+|++|+||||+|+.+.....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999988764
No 399
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=94.66 E-value=0.059 Score=53.52 Aligned_cols=47 Identities=23% Similarity=0.415 Sum_probs=33.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHH
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQG 224 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 224 (559)
+++.+.|-||+||||+|...+-....++ ..+.-++..+..++.+++.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L~d~l~ 48 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAHSLSDVLG 48 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHHHHHHT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccHHHHhC
Confidence 6899999999999999988877765442 2466667666666555443
No 400
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.65 E-value=0.032 Score=52.10 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
+..+.|.|+|++|+|||||+..+...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45678999999999999999998754
No 401
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.64 E-value=0.026 Score=51.72 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.++.|+|++|+|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997754
No 402
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.64 E-value=0.18 Score=50.25 Aligned_cols=87 Identities=24% Similarity=0.373 Sum_probs=50.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeC-CCcCHHHHHHHHHHHhCCC-------CcCCChhh-----
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVS-QNQDIRKLQGEIADKLGLK-------FHEESESG----- 241 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 241 (559)
-..++|.|+.|+|||||.+.+..... .+..+..-+. ....+.++.......-+.. ..+.+...
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 35789999999999999998887543 2333444443 3445556555555433221 11111111
Q ss_pred -hHHHHHHHH-HcCCeEEEEEeCCCc
Q 043056 242 -RANSLFKRI-KAEKKILIILDNIWE 265 (559)
Q Consensus 242 -~~~~l~~~l-~~~kr~LlVlDdv~~ 265 (559)
....+.+.+ .++|.+||++||+-.
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccchH
Confidence 122233333 248999999999843
No 403
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.62 E-value=0.16 Score=50.59 Aligned_cols=28 Identities=32% Similarity=0.382 Sum_probs=24.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSD 202 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (559)
=+-|..+||+|.|||-||+.|+......
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATEc~tT 272 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATECGTT 272 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHhhcCe
Confidence 3568899999999999999999987743
No 404
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.62 E-value=0.03 Score=50.31 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 178 LGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
|.|.|.+|+|||||++.+.+..+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999988753
No 405
>PRK06851 hypothetical protein; Provisional
Probab=94.61 E-value=0.49 Score=47.95 Aligned_cols=41 Identities=22% Similarity=0.211 Sum_probs=31.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeC
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVS 214 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 214 (559)
+-.+++.|.|++|+|||||+..++.....+ .++..++-|.+
T Consensus 212 ~~~~~~~i~G~pG~GKstl~~~i~~~a~~~-G~~v~~~hC~~ 252 (367)
T PRK06851 212 GVKNRYFLKGRPGTGKSTMLKKIAKAAEER-GFDVEVYHCGF 252 (367)
T ss_pred ccceEEEEeCCCCCcHHHHHHHHHHHHHhC-CCeEEEEeCCC
Confidence 445789999999999999999999988655 35555554433
No 406
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.60 E-value=0.076 Score=52.24 Aligned_cols=55 Identities=24% Similarity=0.176 Sum_probs=41.7
Q ss_pred CCCccchHHHHHH---HHHHcCCC--CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCe
Q 043056 153 YLPFESRMFTLRN---ILSALEDP--DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQ 207 (559)
Q Consensus 153 ~~~~~gR~~~~~~---l~~~L~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~ 207 (559)
..+++|..+..+. +++++.++ .-+.|.++||+|+|||.||..+.+.....-+|..
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~ 97 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVA 97 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCcee
Confidence 4568887665543 55555543 3478999999999999999999999987767743
No 407
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.57 E-value=0.2 Score=51.84 Aligned_cols=87 Identities=21% Similarity=0.393 Sum_probs=52.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCCC-------CcCCChhhh----
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQ-DIRKLQGEIADKLGLK-------FHEESESGR---- 242 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 242 (559)
-..++|.|..|+|||||.+.+++... .+.++++-+++.. ...++....+..-+.. ..+.+....
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAG 237 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHH
Confidence 45799999999999999999988654 3567777776654 3444444433221111 111111111
Q ss_pred --HHHHHHHH-HcCCeEEEEEeCCCc
Q 043056 243 --ANSLFKRI-KAEKKILIILDNIWE 265 (559)
Q Consensus 243 --~~~l~~~l-~~~kr~LlVlDdv~~ 265 (559)
...+-+.+ .++|++||++||+-.
T Consensus 238 ~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 238 FVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 22233343 248999999999943
No 408
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.57 E-value=0.075 Score=52.79 Aligned_cols=49 Identities=22% Similarity=0.374 Sum_probs=37.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGE 225 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 225 (559)
.+++.+.|.||+||||+|....-.....+ ..++-|+..+..++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999999777665542 44777888777777666554
No 409
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.56 E-value=0.037 Score=51.14 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
..+|.|.|.+|+||||+|+.+.....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~ 28 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRA 28 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999998753
No 410
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.56 E-value=0.099 Score=53.47 Aligned_cols=41 Identities=20% Similarity=0.370 Sum_probs=32.7
Q ss_pred HHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 043056 162 TLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSD 202 (559)
Q Consensus 162 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (559)
.++.+++.+.......+.|.|+||+|||+|.+.+.+..+..
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~ 49 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR 49 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc
Confidence 45566666655666789999999999999999999987653
No 411
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.55 E-value=0.032 Score=49.22 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 043056 178 LGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
|.|+|++|+||||+|+.+.....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998764
No 412
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.55 E-value=0.086 Score=54.52 Aligned_cols=46 Identities=22% Similarity=0.203 Sum_probs=33.2
Q ss_pred CccchHHHHHHHHHHcC-------C---------CCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 155 PFESRMFTLRNILSALE-------D---------PDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 155 ~~~gR~~~~~~l~~~L~-------~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.++|.+..++.+...+. . .....+.++|++|+|||+||+.++....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 36787777776644331 1 0235689999999999999999987654
No 413
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.52 E-value=0.085 Score=57.54 Aligned_cols=76 Identities=16% Similarity=0.147 Sum_probs=51.2
Q ss_pred CCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCC
Q 043056 153 YLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGL 232 (559)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 232 (559)
...++|.++.++.+...+..+ +.+.++|++|+||||+++.+.+..... .|...+++.- ...+...+++.+...++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~~n-~~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVYPN-PEDPNMPRIVEVPAGEGR 92 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHcCch-hheeEEEEeC-CCCCchHHHHHHHHhhch
Confidence 455788888888777776654 356699999999999999999877543 3333333322 223445556666666653
No 414
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.51 E-value=0.21 Score=53.18 Aligned_cols=86 Identities=16% Similarity=0.159 Sum_probs=50.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCc------------------
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFH------------------ 235 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------------------ 235 (559)
.-+++.|.|++|+||||||.++...-..+ .=...+||+.... ..++.+. +..++.+..
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~-~ge~~lyvs~eE~--~~~l~~~-~~~~G~~~~~~~~~g~l~~~~~~~~~~ 95 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIH-FDEPGVFVTFEES--PQDIIKN-ARSFGWDLQKLVDEGKLFILDASPDPE 95 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEecC--HHHHHHH-HHHcCCCHHHHhhcCceEEEecCchhc
Confidence 45789999999999999999986653221 0145788887643 3344333 233332111
Q ss_pred ------CCChhhhHHHHHHHHHcCCeEEEEEeCC
Q 043056 236 ------EESESGRANSLFKRIKAEKKILIILDNI 263 (559)
Q Consensus 236 ------~~~~~~~~~~l~~~l~~~kr~LlVlDdv 263 (559)
..+.......+...+..+++-.+|+|-+
T Consensus 96 ~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl 129 (484)
T TIGR02655 96 GQDVVGGFDLSALIERINYAIRKYKAKRVSIDSV 129 (484)
T ss_pred cccccccCCHHHHHHHHHHHHHHhCCcEEEEeeh
Confidence 0111233445555665566778999954
No 415
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.51 E-value=0.15 Score=47.79 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 043056 178 LGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
|.|.|++|+||||+|+.+.....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g 24 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG 24 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999987654
No 416
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.50 E-value=0.15 Score=45.75 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=28.5
Q ss_pred cchHHHHHHHHHHcC--CCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 157 ESRMFTLRNILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 157 ~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
+|....+.++.+.+. .....-|.|+|..|+||+.+|+.+++...
T Consensus 2 iG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~ 47 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSP 47 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCST
T ss_pred EeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhh
Confidence 444455555555443 12225577999999999999999999543
No 417
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.50 E-value=0.11 Score=47.86 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=24.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSD 202 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (559)
..|+|.|+.|+||||+++.+.+.....
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~ 30 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQEN 30 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 579999999999999999999887653
No 418
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.50 E-value=0.11 Score=55.60 Aligned_cols=62 Identities=13% Similarity=0.168 Sum_probs=42.9
Q ss_pred CCCccchHHHHHHHHHHcC--CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCC
Q 043056 153 YLPFESRMFTLRNILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQN 216 (559)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 216 (559)
...++|+...+.++.+.+. ......|.|+|..|+|||++|+.+++..... -...+.|+++.-
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~--~~p~v~v~c~~~ 249 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRA--DKPLVYLNCAAL 249 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcC--CCCeEEEEcccC
Confidence 3457888877777776665 2334568899999999999999999875422 123455555543
No 419
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.47 E-value=0.042 Score=51.28 Aligned_cols=26 Identities=42% Similarity=0.528 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
.+++|+|++|+|||||++.+.--.+.
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 58999999999999999999876543
No 420
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.47 E-value=0.038 Score=49.96 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
...|.|+|+.|+||||+++.+.....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 35699999999999999999998754
No 421
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=0.41 Score=47.55 Aligned_cols=29 Identities=34% Similarity=0.556 Sum_probs=25.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSD 202 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (559)
..+-|.++||+|.|||-||+.++......
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeaga~ 154 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAGAN 154 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcCCC
Confidence 45678899999999999999999987754
No 422
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.46 E-value=0.15 Score=53.92 Aligned_cols=85 Identities=16% Similarity=0.172 Sum_probs=48.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEE-EEEeCCCcCHHHHHHHHHHHhCCC----CcCCCh------hhhHH
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVV-FVEVSQNQDIRKLQGEIADKLGLK----FHEESE------SGRAN 244 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~-wv~~s~~~~~~~~~~~i~~~l~~~----~~~~~~------~~~~~ 244 (559)
.-..|+|++|+|||||++.+.+..... +-++.+ .+-+.+.+... .++.+.+... .-+.+. .....
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~n-~~~~~~ivvLIgERpeEV---tdm~rsVkgeVVasT~D~p~~~~~~~a~~ai 492 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITTN-NPECHLMVVLVDERPEEV---TDMQRSVKGEVIASTFDRPPSDHTTVAELAI 492 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhhc-CCCeEEEEEEEeCchhhH---HHHHHhccceEEEECCCCCHHHHHHHHHHHH
Confidence 467899999999999999999876543 344443 44455443222 2223333110 111111 11222
Q ss_pred HHHHHH-HcCCeEEEEEeCCC
Q 043056 245 SLFKRI-KAEKKILIILDNIW 264 (559)
Q Consensus 245 ~l~~~l-~~~kr~LlVlDdv~ 264 (559)
.+-+++ ..++.+||++|++-
T Consensus 493 ~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 493 ERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHHcCCCEEEEEeCch
Confidence 333444 25899999999984
No 423
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.44 E-value=0.19 Score=48.55 Aligned_cols=93 Identities=15% Similarity=0.205 Sum_probs=52.3
Q ss_pred eEEEEEcCCCCcHHHHH-HHHHHHhcccCCCCeE-EEEEeCCCc-CHHHHHHHHHHHhCCC-------CcCCChhh----
Q 043056 176 NMLGIYGMGGIGKTMLA-EEVARKVKSDKLFDQV-VFVEVSQNQ-DIRKLQGEIADKLGLK-------FHEESESG---- 241 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 241 (559)
..++|.|..|+|||+|| ..+.+.. .-+.+ +++-+++.. ...++..++...-... ..+++...
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 46899999999999996 5555542 13444 666666553 4556666655432111 11111111
Q ss_pred --hHHHHHHHHH-cCCeEEEEEeCCCcc-cccchh
Q 043056 242 --RANSLFKRIK-AEKKILIILDNIWEN-LDLRVV 272 (559)
Q Consensus 242 --~~~~l~~~l~-~~kr~LlVlDdv~~~-~~~~~l 272 (559)
..-.+.+.+. +++..||++||+-.. ..+.++
T Consensus 146 ~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 146 PYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHH
Confidence 1223333332 479999999999544 334444
No 424
>PRK05922 type III secretion system ATPase; Validated
Probab=94.41 E-value=0.26 Score=50.96 Aligned_cols=87 Identities=17% Similarity=0.306 Sum_probs=49.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCC-CcCHHHHHHHHHHHhCCCC-------cCCChhh-----
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQ-NQDIRKLQGEIADKLGLKF-------HEESESG----- 241 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~-------~~~~~~~----- 241 (559)
-..++|.|+.|+|||||.+.+..... .+...++.++. .....+.+.+......... .+.+...
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 34689999999999999999886543 33334433433 3334455544443332211 1111111
Q ss_pred -hHHHHHHHH-HcCCeEEEEEeCCCc
Q 043056 242 -RANSLFKRI-KAEKKILIILDNIWE 265 (559)
Q Consensus 242 -~~~~l~~~l-~~~kr~LlVlDdv~~ 265 (559)
.+..+.+.+ .+++++||++||+-.
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 122344444 248999999999943
No 425
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.41 E-value=0.033 Score=48.98 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
+|.|+|.+|+||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998865
No 426
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.41 E-value=0.066 Score=52.14 Aligned_cols=92 Identities=14% Similarity=0.209 Sum_probs=51.6
Q ss_pred HHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCC-------Chh
Q 043056 168 SALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEE-------SES 240 (559)
Q Consensus 168 ~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-------~~~ 240 (559)
+++...+..+|.|.|.+|+|||||+..+.+..... . .++.+. ....+..+ .+.++..+.+.... ...
T Consensus 97 ~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~--~-~~~VI~-gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a 170 (290)
T PRK10463 97 ARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS--V-PCAVIE-GDQQTVND--AARIRATGTPAIQVNTGKGCHLDA 170 (290)
T ss_pred HHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC--C-CEEEEC-CCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcH
Confidence 34445678999999999999999999999986543 2 222221 11122222 22344444332111 122
Q ss_pred hhHHHHHHHHHcCCeEEEEEeCCCc
Q 043056 241 GRANSLFKRIKAEKKILIILDNIWE 265 (559)
Q Consensus 241 ~~~~~l~~~l~~~kr~LlVlDdv~~ 265 (559)
..+......|.....-+||++++-.
T Consensus 171 ~mv~~Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 171 QMIADAAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHHHHHHHhhcCCcEEEEECCCC
Confidence 2334445555434446778888853
No 427
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.11 Score=50.25 Aligned_cols=29 Identities=38% Similarity=0.489 Sum_probs=26.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSD 202 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (559)
.+..+.|||++|.|||-+|+.|+......
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~n 193 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVN 193 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCc
Confidence 46789999999999999999999988765
No 428
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.38 E-value=0.033 Score=49.80 Aligned_cols=21 Identities=38% Similarity=0.441 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 043056 178 LGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~ 198 (559)
|+|.|..|+|||||+..+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999987
No 429
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.37 E-value=0.17 Score=52.21 Aligned_cols=88 Identities=23% Similarity=0.352 Sum_probs=49.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCC-------cCCChhh------
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKF-------HEESESG------ 241 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~~~------ 241 (559)
-..++|.|..|+|||||++.+...... ...++...-.....+.++..+.+..-+... .+.+...
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~~---~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTDA---DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCCC---CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 357999999999999999888865432 222332222333445555555443322211 1111111
Q ss_pred hHHHHHHHHH-cCCeEEEEEeCCCc
Q 043056 242 RANSLFKRIK-AEKKILIILDNIWE 265 (559)
Q Consensus 242 ~~~~l~~~l~-~~kr~LlVlDdv~~ 265 (559)
.+..+.+.+. ++++.||++||+-.
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhH
Confidence 1223344442 48899999999843
No 430
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.36 E-value=0.11 Score=52.38 Aligned_cols=64 Identities=23% Similarity=0.218 Sum_probs=46.7
Q ss_pred ccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHH
Q 043056 156 FESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEI 226 (559)
Q Consensus 156 ~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 226 (559)
++|++.....+...+..+ +-+.+.|++|+|||+||+.+....... .+++.+.......++....
T Consensus 26 ~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l~~~-----~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 26 VVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARALGLP-----FVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHhCCC-----eEEEecCCCCCHHHhcCch
Confidence 677777777776666544 358899999999999999999987632 4566666666666654443
No 431
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.35 E-value=0.16 Score=52.39 Aligned_cols=87 Identities=23% Similarity=0.386 Sum_probs=50.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCC-cCHHHHHHHHHHHhCCC-------CcCCChhh-----
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQN-QDIRKLQGEIADKLGLK-------FHEESESG----- 241 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 241 (559)
-..++|.|..|+|||||+..+..... .+..+...++.. ..+.++...+...-... ..+.+...
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~ 212 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAA 212 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHH
Confidence 35799999999999999988886543 344445555543 33444545444321111 11111111
Q ss_pred -hHHHHHHHHH-cCCeEEEEEeCCCc
Q 043056 242 -RANSLFKRIK-AEKKILIILDNIWE 265 (559)
Q Consensus 242 -~~~~l~~~l~-~~kr~LlVlDdv~~ 265 (559)
.+..+.+.+. ++++.||++||+-.
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 213 FYATAIAEYFRDQGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeChHH
Confidence 1223334442 48899999999843
No 432
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.29 Score=46.87 Aligned_cols=93 Identities=23% Similarity=0.319 Sum_probs=57.8
Q ss_pred CCCCCccchHHHHHHHHHHcC-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCc
Q 043056 151 KDYLPFESRMFTLRNILSALE-------------DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQ 217 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 217 (559)
..+..+-|-+..+++|.+.+. -..++=|.++|.+|.|||-||+.|+|.-... |-.
T Consensus 182 Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSAT--FlR---------- 249 (440)
T KOG0726|consen 182 ETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSAT--FLR---------- 249 (440)
T ss_pred hhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchh--hhh----------
Confidence 345556677878888777654 1245678899999999999999999976543 321
Q ss_pred CHHHHHHHHH-HHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCC
Q 043056 218 DIRKLQGEIA-DKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIW 264 (559)
Q Consensus 218 ~~~~~~~~i~-~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~ 264 (559)
-+-.+++ +.+|. .......+++-....-+-++++|.++
T Consensus 250 ---vvGseLiQkylGd------GpklvRqlF~vA~e~apSIvFiDEId 288 (440)
T KOG0726|consen 250 ---VVGSELIQKYLGD------GPKLVRELFRVAEEHAPSIVFIDEID 288 (440)
T ss_pred ---hhhHHHHHHHhcc------chHHHHHHHHHHHhcCCceEEeehhh
Confidence 1222222 22321 12344445554444567888888875
No 433
>PRK00698 tmk thymidylate kinase; Validated
Probab=94.32 E-value=0.11 Score=48.19 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=24.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSD 202 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (559)
++|+|.|+.|+||||+++.+.+.....
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999887543
No 434
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.32 E-value=0.14 Score=55.29 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
+-..++|+|++|+|||||++.+..-.
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999997654
No 435
>PRK14529 adenylate kinase; Provisional
Probab=94.30 E-value=0.18 Score=47.37 Aligned_cols=83 Identities=17% Similarity=0.180 Sum_probs=44.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCe--EEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCC
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVKSDKLFDQ--VVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEK 254 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~--~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 254 (559)
.|.|.|++|+||||+++.+....... +.+. .+.-.+..........++++..- .-.++.-....+.+.+.+..
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~-~is~gdllr~~i~~~t~lg~~i~~~i~~G----~lvpdei~~~lv~~~l~~~~ 76 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLA-HIESGAIFREHIGGGTELGKKAKEYIDRG----DLVPDDITIPMILETLKQDG 76 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC-CcccchhhhhhccCCChHHHHHHHHHhcc----CcchHHHHHHHHHHHHhccC
Confidence 37889999999999999999887643 2221 11112222222333334443321 11222333444555554322
Q ss_pred eEEEEEeCCC
Q 043056 255 KILIILDNIW 264 (559)
Q Consensus 255 r~LlVlDdv~ 264 (559)
.--+|||..=
T Consensus 77 ~~g~iLDGfP 86 (223)
T PRK14529 77 KNGWLLDGFP 86 (223)
T ss_pred CCcEEEeCCC
Confidence 4458899884
No 436
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.29 E-value=0.037 Score=51.70 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.+++|+|++|+|||||...+.--.+
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccC
Confidence 5899999999999999998876443
No 437
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.28 E-value=0.058 Score=54.04 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=37.8
Q ss_pred CCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 152 DYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
++..++|.+..++.+.-.+.+.+..-+.+.|+.|+||||+|+.+..-.
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 455688999888887755544444569999999999999999998765
No 438
>PRK09099 type III secretion system ATPase; Provisional
Probab=94.27 E-value=0.21 Score=51.85 Aligned_cols=89 Identities=19% Similarity=0.343 Sum_probs=51.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCC-------CcCCChhh-----
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLK-------FHEESESG----- 241 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 241 (559)
+-..++|.|+.|+|||||++.+....... ..+++..-.....+.++.+.+...-+.. ..+.+...
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 34679999999999999999988654321 2344433334445555555554432221 11111111
Q ss_pred -hHHHHHHHH-HcCCeEEEEEeCCCc
Q 043056 242 -RANSLFKRI-KAEKKILIILDNIWE 265 (559)
Q Consensus 242 -~~~~l~~~l-~~~kr~LlVlDdv~~ 265 (559)
....+-+.+ .+++++|+++||+-.
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 122333444 248999999999843
No 439
>PLN02200 adenylate kinase family protein
Probab=94.26 E-value=0.046 Score=52.03 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.+.+|.|.|++|+||||+|+.+.....
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999987654
No 440
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.25 E-value=0.31 Score=47.34 Aligned_cols=89 Identities=16% Similarity=0.290 Sum_probs=50.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQ-DIRKLQGEIADKLGLKFHEESESGRANSLFKRIKA 252 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 252 (559)
+..+++++|++|+||||++..+......+. ..+.+++..... ....-++...+.++.+.........+......+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~--~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 447999999999999999999887754321 245566554322 22222334444444433222222333344444432
Q ss_pred -CCeEEEEEeCCC
Q 043056 253 -EKKILIILDNIW 264 (559)
Q Consensus 253 -~kr~LlVlDdv~ 264 (559)
.+.=++++|..-
T Consensus 152 ~~~~D~ViIDt~G 164 (270)
T PRK06731 152 EARVDYILIDTAG 164 (270)
T ss_pred cCCCCEEEEECCC
Confidence 234678888773
No 441
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=94.25 E-value=0.12 Score=47.99 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
+....|+|+|.+|+|||||...+....
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 445689999999999999999988763
No 442
>PRK13695 putative NTPase; Provisional
Probab=94.25 E-value=0.063 Score=48.59 Aligned_cols=34 Identities=32% Similarity=0.465 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEE
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFV 211 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 211 (559)
.|.|+|++|+|||||++.+++..... .+....|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~-G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEE-GYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEE
Confidence 47899999999999999998876542 24434344
No 443
>PLN02796 D-glycerate 3-kinase
Probab=94.24 E-value=0.28 Score=48.98 Aligned_cols=28 Identities=25% Similarity=0.265 Sum_probs=24.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
.+-+|+|.|+.|+|||||++.+......
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~ 126 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNA 126 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 4568999999999999999999987754
No 444
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.24 E-value=0.2 Score=51.76 Aligned_cols=88 Identities=16% Similarity=0.284 Sum_probs=50.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCC-cCHHHHHHHHHHHhCCC-------CcCCChhh----
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQN-QDIRKLQGEIADKLGLK-------FHEESESG---- 241 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~---- 241 (559)
.-..++|.|..|+|||||++.+.+... .+..++..++.. ..+.+++.+....-... ..+.+...
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAPD----ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCCC----CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 345799999999999999998886543 445555555543 34445555543211000 01111111
Q ss_pred --hHHHHHHHH-HcCCeEEEEEeCCCc
Q 043056 242 --RANSLFKRI-KAEKKILIILDNIWE 265 (559)
Q Consensus 242 --~~~~l~~~l-~~~kr~LlVlDdv~~ 265 (559)
....+.+.+ .+++++||++||+-.
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 122333444 248899999999953
No 445
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=94.23 E-value=0.17 Score=49.18 Aligned_cols=88 Identities=18% Similarity=0.281 Sum_probs=51.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc-cCC-------CCeEEEEEeCCC-cCHHHHHHHHHHHhCCCCcCCCh--------
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVKS-DKL-------FDQVVFVEVSQN-QDIRKLQGEIADKLGLKFHEESE-------- 239 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~-~~~-------f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~-------- 239 (559)
+..|+|.||+|||||+..++-.... ++. ...+++|++... .++-.=++.+..++++++.+...
T Consensus 91 ~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~dltd~~G 170 (402)
T COG3598 91 VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMDLTDVSG 170 (402)
T ss_pred eEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhhheecccccc
Confidence 4556799999999999887755321 222 335788877643 34455566677777765322110
Q ss_pred -------h--hhHHHHHHHHHcCCeEEEEEeCCC
Q 043056 240 -------S--GRANSLFKRIKAEKKILIILDNIW 264 (559)
Q Consensus 240 -------~--~~~~~l~~~l~~~kr~LlVlDdv~ 264 (559)
. ....+....+.+.++-++|+|-.-
T Consensus 171 aa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v 204 (402)
T COG3598 171 AADESDVLSPKLYRRFEKILEQKRPDFVVIDPFV 204 (402)
T ss_pred CCCccccccHHHHHHHHHHHHHhCCCeEEEcchh
Confidence 0 112233333344567789999763
No 446
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.21 E-value=0.39 Score=46.91 Aligned_cols=51 Identities=14% Similarity=0.179 Sum_probs=35.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADK 229 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 229 (559)
.++.|.|++|+||||++.++......+ +=..++|+++... ..++...+...
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEEcccC--HHHHHHHHHHH
Confidence 578899999999999999988775432 1245788887653 34555555443
No 447
>PRK04182 cytidylate kinase; Provisional
Probab=94.20 E-value=0.043 Score=49.78 Aligned_cols=24 Identities=38% Similarity=0.497 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
+|.|.|+.|+||||+|+.+.....
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 799999999999999999998765
No 448
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.16 E-value=0.046 Score=49.18 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
+|.|.|+.|+||||+|+.+.+...
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg 25 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 799999999999999999988654
No 449
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=94.13 E-value=0.072 Score=52.78 Aligned_cols=40 Identities=20% Similarity=0.428 Sum_probs=28.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCC
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQN 216 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 216 (559)
.++|+|.|-||+||||++..+.......+ + .++-|.....
T Consensus 4 ~~~iai~~KGGvGKTt~~~nLa~~la~~g-~-kVLliD~D~q 43 (295)
T PRK13234 4 LRQIAFYGKGGIGKSTTSQNTLAALVEMG-Q-KILIVGCDPK 43 (295)
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCC-C-eEEEEecccc
Confidence 46888889999999999998887765432 3 3555555443
No 450
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.13 E-value=0.041 Score=49.86 Aligned_cols=27 Identities=30% Similarity=0.582 Sum_probs=23.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSD 202 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (559)
+.|.+.|++|+||||+|+++....+.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 468899999999999999999887754
No 451
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.12 E-value=0.048 Score=49.49 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.++.|+|++|+|||||++.++....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998765
No 452
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.11 E-value=0.32 Score=50.47 Aligned_cols=89 Identities=20% Similarity=0.407 Sum_probs=56.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCC-cCHHHHHHHHHHHhCCC-------CcCCChhh------
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQN-QDIRKLQGEIADKLGLK-------FHEESESG------ 241 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~------ 241 (559)
..++|.|.+|+|||||+..+......++ -..++++-++.. ..+.+++.++...-... ..+.+...
T Consensus 144 Qr~~If~~~G~GKt~L~~~~~~~~~~~~-~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~ 222 (461)
T TIGR01039 144 GKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVAL 222 (461)
T ss_pred CEEEeecCCCCChHHHHHHHHHHHHhcC-CCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 4689999999999999999887765432 346777777654 44566666665432111 11122111
Q ss_pred hHHHHHHHHH--cCCeEEEEEeCCCc
Q 043056 242 RANSLFKRIK--AEKKILIILDNIWE 265 (559)
Q Consensus 242 ~~~~l~~~l~--~~kr~LlVlDdv~~ 265 (559)
....+-+.+. +++++||++||+-.
T Consensus 223 ~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 223 TGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHhcCCeeEEEecchhH
Confidence 1233445553 37899999999953
No 453
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.10 E-value=0.3 Score=50.81 Aligned_cols=89 Identities=21% Similarity=0.396 Sum_probs=55.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCC-cCHHHHHHHHHHHhCCC-------CcCCChhh------
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQN-QDIRKLQGEIADKLGLK-------FHEESESG------ 241 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~------ 241 (559)
..++|.|.+|+|||||+..+......+. -+.++++-++.. ..+.+++.++...-... ..+.+...
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 4689999999999999999887765432 246777777654 34566666665432211 11111111
Q ss_pred hHHHHHHHH--HcCCeEEEEEeCCCc
Q 043056 242 RANSLFKRI--KAEKKILIILDNIWE 265 (559)
Q Consensus 242 ~~~~l~~~l--~~~kr~LlVlDdv~~ 265 (559)
....+-+.+ .+++++||++|++-.
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecchHH
Confidence 122344444 258999999999943
No 454
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.09 E-value=0.13 Score=52.05 Aligned_cols=111 Identities=10% Similarity=0.087 Sum_probs=56.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcC
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAE 253 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (559)
....|.|.|+.|+||||+...+...... +....++. +...... ........+.....+.........+...+. .
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~--~~~~~i~t-iEdp~E~--~~~~~~~~i~q~evg~~~~~~~~~l~~~lr-~ 194 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINK--NAAGHIIT-IEDPIEY--VHRNKRSLINQREVGLDTLSFANALRAALR-E 194 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCc--CCCCEEEE-EcCChhh--hccCccceEEccccCCCCcCHHHHHHHhhc-c
Confidence 3478999999999999999998876542 23333332 2222111 000000000000001111122233333444 5
Q ss_pred CeEEEEEeCCCcccccchhcCCCCCCCCCcEEEEEecCcc
Q 043056 254 KKILIILDNIWENLDLRVVGIPHGDGHKDCKVLLTARSLD 293 (559)
Q Consensus 254 kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~ 293 (559)
.+=.|++|.+.+...+...... ...|..|+.|.-..+
T Consensus 195 ~pd~i~vgEird~~~~~~~l~a---a~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 195 DPDVILIGEMRDLETVELALTA---AETGHLVFGTLHTNS 231 (343)
T ss_pred CCCEEEEeCCCCHHHHHHHHHH---HHcCCcEEEEEcCCC
Confidence 6889999999877666543222 233555666665443
No 455
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=94.08 E-value=0.044 Score=52.26 Aligned_cols=34 Identities=24% Similarity=0.422 Sum_probs=23.9
Q ss_pred EEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCC
Q 043056 180 IYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQ 215 (559)
Q Consensus 180 I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 215 (559)
|+||+|+||||+++.+.+.....+ ..++-|+..+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~--~~~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNG--RDVYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT---S-EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcc--CCceEEEcch
Confidence 689999999999999999887652 3455566543
No 456
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.08 E-value=0.043 Score=51.54 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
-.+|+|+|++|+|||||.+.+.--.
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999988643
No 457
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.06 E-value=0.46 Score=45.43 Aligned_cols=50 Identities=18% Similarity=0.287 Sum_probs=35.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHH
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIAD 228 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (559)
.++.|.|++|+|||+++.++......+. =..++|++... +..++...++.
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~~~-g~~vly~s~E~--~~~~~~~r~~~ 63 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKKQ-GKPVLFFSLEM--SKEQLLQRLLA 63 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCceEEEeCCC--CHHHHHHHHHH
Confidence 5899999999999999999887755431 23567777655 34555565543
No 458
>PRK13948 shikimate kinase; Provisional
Probab=94.06 E-value=0.057 Score=49.13 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.....|.++|+.|+||||+++.+.+...
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3457899999999999999999998765
No 459
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=94.02 E-value=0.073 Score=53.06 Aligned_cols=53 Identities=23% Similarity=0.239 Sum_probs=36.6
Q ss_pred CCCccchHHHHHH---HHHHcCCCC--ceEEEEEcCCCCcHHHHHHHHHHHhcccCCC
Q 043056 153 YLPFESRMFTLRN---ILSALEDPD--VNMLGIYGMGGIGKTMLAEEVARKVKSDKLF 205 (559)
Q Consensus 153 ~~~~~gR~~~~~~---l~~~L~~~~--~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f 205 (559)
..+++|..+..+. +++++.+++ -+.|.+.|++|+|||+||..+......+-+|
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF 80 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF 80 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe
Confidence 3578887665553 455555443 4789999999999999999999998866444
No 460
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.01 E-value=0.076 Score=47.16 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=24.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSD 202 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (559)
+++.|+|..|+|||||+..+.......
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999887654
No 461
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=93.98 E-value=0.073 Score=52.18 Aligned_cols=39 Identities=28% Similarity=0.508 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCC
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQN 216 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 216 (559)
+.|+|+|-||+||||++..++.....++ + .++-+.....
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G-~-~VlliD~D~q 39 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMG-K-KVMIVGCDPK 39 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCC-C-eEEEEeCCCC
Confidence 4689999999999999999998876543 2 3445555433
No 462
>PRK13946 shikimate kinase; Provisional
Probab=93.97 E-value=0.051 Score=49.74 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
.+.|.++|++|+||||+++.+.+....
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~ 36 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGL 36 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 357999999999999999999998753
No 463
>PRK06761 hypothetical protein; Provisional
Probab=93.95 E-value=0.051 Score=52.90 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=26.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEE
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVV 209 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~ 209 (559)
++|.|.|++|+||||+++.+++..... .++...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~-g~~v~~ 36 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQN-GIEVEL 36 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcC-ceEEEE
Confidence 589999999999999999999987643 344333
No 464
>PLN02348 phosphoribulokinase
Probab=93.95 E-value=0.061 Score=54.47 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=26.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 172 DPDVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
.+++.+|+|.|.+|+||||+|+.+.+....
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 356789999999999999999999998753
No 465
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=93.95 E-value=0.29 Score=46.25 Aligned_cols=41 Identities=12% Similarity=0.270 Sum_probs=31.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCC
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQN 216 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 216 (559)
.-.++.|.|.+|+|||+++.+++...-.+ =..++|++....
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~--g~~~~y~s~e~~ 55 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKN--GEKAMYISLEER 55 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCC
Confidence 34689999999999999999988764332 245778887663
No 466
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=93.90 E-value=0.39 Score=53.24 Aligned_cols=48 Identities=15% Similarity=0.240 Sum_probs=34.1
Q ss_pred CCCccchHHHHHHHHHHcC--CCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 153 YLPFESRMFTLRNILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
...++|....+.++.+.+. ......|.|+|..|+||+++|+.+++...
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~ 373 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESE 373 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCC
Confidence 3456777766666655543 12223478999999999999999998643
No 467
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=93.90 E-value=0.33 Score=52.18 Aligned_cols=85 Identities=15% Similarity=0.205 Sum_probs=52.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcC----------------CC
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHE----------------ES 238 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----------------~~ 238 (559)
-.++.|.|++|+|||+|+.++....... -..++|++.... ..++.+.+ ..++.+... ..
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~--g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~ 347 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRR--GERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPESYG 347 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCcccCC
Confidence 4688899999999999999998765433 356888887654 34443333 344432110 01
Q ss_pred hhhhHHHHHHHHHcCCeEEEEEeCCC
Q 043056 239 ESGRANSLFKRIKAEKKILIILDNIW 264 (559)
Q Consensus 239 ~~~~~~~l~~~l~~~kr~LlVlDdv~ 264 (559)
..+....+...+...+.-++|+|.+.
T Consensus 348 ~~~~~~~i~~~i~~~~~~~vVIDslt 373 (509)
T PRK09302 348 LEDHLIIIKREIEEFKPSRVAIDPLS 373 (509)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 12233444444444455688999874
No 468
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=93.90 E-value=0.11 Score=43.68 Aligned_cols=36 Identities=25% Similarity=0.340 Sum_probs=26.8
Q ss_pred HHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 043056 165 NILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSD 202 (559)
Q Consensus 165 ~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (559)
.|.+.|. .-.+|.+.|.=|+||||+++.++......
T Consensus 7 ~l~~~l~--~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 7 KLAQILK--PGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp HHHHHHS--S-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred HHHHhCC--CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 3444443 33789999999999999999999987543
No 469
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.89 E-value=0.22 Score=51.50 Aligned_cols=89 Identities=18% Similarity=0.303 Sum_probs=51.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCC-------cCCChhh------
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKF-------HEESESG------ 241 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~~~------ 241 (559)
-..++|.|..|+|||||+..++..... ...++...-.......+.+...+..-+... .+.+...
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~ 232 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAK 232 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCCC---CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHH
Confidence 357899999999999999998876542 122333222233566666665554433221 1111111
Q ss_pred hHHHHHHHH-HcCCeEEEEEeCCCcc
Q 043056 242 RANSLFKRI-KAEKKILIILDNIWEN 266 (559)
Q Consensus 242 ~~~~l~~~l-~~~kr~LlVlDdv~~~ 266 (559)
....+.+.+ .++++.||++||+-..
T Consensus 233 ~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 233 LATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHcCCcEEEEecchHHH
Confidence 111223333 2489999999999543
No 470
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=93.88 E-value=0.15 Score=47.04 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVAR 197 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~ 197 (559)
..+|+|+|+.|+||||+|+.+.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 36899999999999999998877
No 471
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=93.85 E-value=0.29 Score=51.25 Aligned_cols=89 Identities=19% Similarity=0.306 Sum_probs=55.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccc---CCCCeEEEEEeCCC-cCHHHHHHHHHHHhCCC-------CcCCChhh---
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSD---KLFDQVVFVEVSQN-QDIRKLQGEIADKLGLK-------FHEESESG--- 241 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~--- 241 (559)
..++|.|..|+|||||+..+.+....+ ..+ .++++-+++. ..+.+++.++...-... ..+.+...
T Consensus 144 QR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~-v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 222 (460)
T PRK04196 144 QKLPIFSGSGLPHNELAAQIARQAKVLGEEENF-AVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERIL 222 (460)
T ss_pred CEEEeeCCCCCCccHHHHHHHHhhhhccCCCce-EEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHH
Confidence 468899999999999999998876532 111 5677777654 45566666665532211 11111111
Q ss_pred ---hHHHHHHHHH--cCCeEEEEEeCCCc
Q 043056 242 ---RANSLFKRIK--AEKKILIILDNIWE 265 (559)
Q Consensus 242 ---~~~~l~~~l~--~~kr~LlVlDdv~~ 265 (559)
....+-+.+. +++++||++||+-.
T Consensus 223 a~~~a~tiAEyfr~d~G~~VLli~DslTR 251 (460)
T PRK04196 223 TPRMALTAAEYLAFEKGMHVLVILTDMTN 251 (460)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEcChHH
Confidence 2334555554 57999999999843
No 472
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=93.85 E-value=0.072 Score=51.85 Aligned_cols=35 Identities=29% Similarity=0.400 Sum_probs=28.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEe
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEV 213 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 213 (559)
++|+|+|.+|+|||||+..+......+. .+.-+..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G---~V~~IKh 36 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG---RVGTVKH 36 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC---CEEEEEE
Confidence 5899999999999999999999987763 2455543
No 473
>PRK14531 adenylate kinase; Provisional
Probab=93.85 E-value=0.059 Score=49.26 Aligned_cols=25 Identities=24% Similarity=0.208 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
+.|.|.|++|+||||+++.+.....
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999998764
No 474
>PRK13768 GTPase; Provisional
Probab=93.82 E-value=0.1 Score=50.37 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=27.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEe
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEV 213 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 213 (559)
.++.|.|++|+||||++..+.......+ ..++.++.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g--~~v~~i~~ 38 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQG--YDVAIVNL 38 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcC--CceEEEEC
Confidence 5789999999999999999888775432 23444444
No 475
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.81 E-value=0.062 Score=47.06 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.+++.|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999999887766
No 476
>PRK14532 adenylate kinase; Provisional
Probab=93.80 E-value=0.053 Score=49.75 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 043056 178 LGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
|.|.|++|+||||+|+.+.....
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999987653
No 477
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.79 E-value=0.04 Score=51.92 Aligned_cols=24 Identities=25% Similarity=0.029 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVAR 197 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~ 197 (559)
..+++.|.|+.|.||||+.+.+.-
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346889999999999999999887
No 478
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=93.78 E-value=2.6 Score=41.33 Aligned_cols=68 Identities=13% Similarity=0.086 Sum_probs=43.6
Q ss_pred CCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEEEecC-cchhccCCCCCCeeecCCCCHHHHHHHHHH
Q 043056 253 EKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLLTARS-LDVLSGKMDSRPNFSIGVLNEEEAWNLFKK 321 (559)
Q Consensus 253 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~-~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~ 321 (559)
+++-++|+|+++.. ...+.+...+-....++.+|++|.+ ..+..........+.+.+ +.++..+.+..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 55678999999765 3466665555554555666666655 445544445566888876 66666666653
No 479
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=93.78 E-value=0.26 Score=49.56 Aligned_cols=42 Identities=21% Similarity=0.408 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCC---CCceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 043056 161 FTLRNILSALED---PDVNMLGIYGMGGIGKTMLAEEVARKVKSD 202 (559)
Q Consensus 161 ~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (559)
...+.|.+.+.+ ....+|+|.|.=|+||||+.+.+.+.....
T Consensus 3 ~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 3 PYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 344556666653 567899999999999999999999988765
No 480
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=93.76 E-value=0.26 Score=51.51 Aligned_cols=89 Identities=21% Similarity=0.338 Sum_probs=55.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCCCC--------------cCCChh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQ-DIRKLQGEIADKLGLKF--------------HEESES 240 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------------~~~~~~ 240 (559)
..++|.|.+|+|||||+..+....... +=+.++++-+++.. ...+++.++...-.... .+.+..
T Consensus 162 QR~gIfgg~GvGKs~L~~~~~~~~~~~-~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~~ 240 (494)
T CHL00060 162 GKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPG 240 (494)
T ss_pred CEEeeecCCCCChhHHHHHHHHHHHHh-cCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCHH
Confidence 468999999999999999988773321 12678888887654 45666666655211110 011111
Q ss_pred ------hhHHHHHHHHHc-C-CeEEEEEeCCCc
Q 043056 241 ------GRANSLFKRIKA-E-KKILIILDNIWE 265 (559)
Q Consensus 241 ------~~~~~l~~~l~~-~-kr~LlVlDdv~~ 265 (559)
.....+-+.+.. + +++||++||+-.
T Consensus 241 ~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR 273 (494)
T CHL00060 241 ARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFR 273 (494)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEEcccchH
Confidence 122345555542 4 499999999953
No 481
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.75 E-value=0.074 Score=53.06 Aligned_cols=30 Identities=27% Similarity=0.417 Sum_probs=25.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVKSD 202 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (559)
.+..++.++|++|+||||++..++......
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 346899999999999999999999887643
No 482
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.73 E-value=0.05 Score=52.50 Aligned_cols=25 Identities=28% Similarity=0.671 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
.|.++|++|+||||+|+.+......
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999988754
No 483
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.72 E-value=0.049 Score=46.98 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.+++|+|+.|+|||||.+.+.....
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CEEEEEccCCCccccceeeeccccc
Confidence 5899999999999999999887654
No 484
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.72 E-value=0.23 Score=47.88 Aligned_cols=97 Identities=18% Similarity=0.220 Sum_probs=53.4
Q ss_pred ccchHHHHHHHHHHcC-------CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHH
Q 043056 156 FESRMFTLRNILSALE-------DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIAD 228 (559)
Q Consensus 156 ~~gR~~~~~~l~~~L~-------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (559)
++|..-..+.++..+. ..++-+++.+|.+|+||.-.++.+++.......= ......+..
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~--------------S~~V~~fva 149 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLR--------------SPFVHHFVA 149 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhcccc--------------chhHHHhhh
Confidence 3444334444444443 2456699999999999999999998875432100 000111111
Q ss_pred HhCCCCcC---CChhhhHHHHHHHHHcCCeEEEEEeCCCcc
Q 043056 229 KLGLKFHE---ESESGRANSLFKRIKAEKKILIILDNIWEN 266 (559)
Q Consensus 229 ~l~~~~~~---~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 266 (559)
.+..+... .-..+....++.....-+|-|+|+|+++..
T Consensus 150 t~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 150 TLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred hccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 11111110 011233445555555568999999999765
No 485
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.70 E-value=0.16 Score=55.23 Aligned_cols=53 Identities=13% Similarity=0.069 Sum_probs=34.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccC-CCCeEEEEEeCCCcCHHHHHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDK-LFDQVVFVEVSQNQDIRKLQGEIA 227 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~~~wv~~s~~~~~~~~~~~i~ 227 (559)
.++..|.|.+|+||||++..+........ .-...+.+......-...+...+.
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~ 220 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLG 220 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHH
Confidence 36899999999999999999887653321 112456665555444444444443
No 486
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.70 E-value=0.057 Score=49.75 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 043056 178 LGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
|.|.|++|+||||+|+.+.....
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999988743
No 487
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.68 E-value=0.4 Score=53.65 Aligned_cols=101 Identities=19% Similarity=0.248 Sum_probs=58.6
Q ss_pred ccchHHHHHHHHHHcC-------CC-CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHH
Q 043056 156 FESRMFTLRNILSALE-------DP-DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIA 227 (559)
Q Consensus 156 ~~gR~~~~~~l~~~L~-------~~-~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 227 (559)
++|-++.+..+.+.+. ++ ....+.+.||.|+|||.||+.++...-.. .+..+-+++|.. .. +.
T Consensus 564 V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgs--e~~~IriDmse~------~e-vs 634 (898)
T KOG1051|consen 564 VIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGS--EENFIRLDMSEF------QE-VS 634 (898)
T ss_pred ccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCC--ccceEEechhhh------hh-hh
Confidence 3444444555555443 11 35678889999999999999999876432 344455544432 12 22
Q ss_pred HHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcc
Q 043056 228 DKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWEN 266 (559)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 266 (559)
+..+.+ +.--..+....+.+.+++.-..+|+||||+..
T Consensus 635 kligsp-~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 635 KLIGSP-PGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred hccCCC-cccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 222222 22122334456777777544457788999755
No 488
>PRK08356 hypothetical protein; Provisional
Probab=93.61 E-value=0.063 Score=49.65 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVA 196 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~ 196 (559)
..+|.|+|++|+||||+|+.+.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999999994
No 489
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.59 E-value=0.1 Score=44.84 Aligned_cols=37 Identities=14% Similarity=0.248 Sum_probs=29.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEE
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVE 212 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 212 (559)
.++.+.||+|.||+||..-+.-....+-.|...+|+.
T Consensus 29 eivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~ 65 (213)
T COG4136 29 EIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLN 65 (213)
T ss_pred cEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEEC
Confidence 5899999999999999999888877662234578874
No 490
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=93.58 E-value=0.15 Score=46.02 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=32.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcC
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQD 218 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 218 (559)
..++.+.||+|+|||.||+.+...... ......+-++++.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccc
Confidence 467889999999999999999998873 1245666666665443
No 491
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.58 E-value=0.084 Score=38.34 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
+..|.|+.|+|||||.-.+..-.
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999998776543
No 492
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=93.56 E-value=0.45 Score=49.44 Aligned_cols=87 Identities=18% Similarity=0.348 Sum_probs=50.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCC-cCHHHHHHHHHHHhCCCC-------cCCChhh-----
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQN-QDIRKLQGEIADKLGLKF-------HEESESG----- 241 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~----- 241 (559)
-..++|+|..|+|||||++.+..... .+.++...+... ....++...+...-+... .+.+...
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~~----~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~ 243 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFTE----ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHH
Confidence 35799999999999999998876432 344444444433 345555555544332211 1111111
Q ss_pred -hHHHHHHHH-HcCCeEEEEEeCCCc
Q 043056 242 -RANSLFKRI-KAEKKILIILDNIWE 265 (559)
Q Consensus 242 -~~~~l~~~l-~~~kr~LlVlDdv~~ 265 (559)
....+-+.+ .+++++||++||+-.
T Consensus 244 ~~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 244 MYCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEecchhH
Confidence 122233333 248999999999843
No 493
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=93.54 E-value=0.069 Score=48.11 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
..|.|+|+.|+||||+++.+.....
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999998764
No 494
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=93.53 E-value=0.072 Score=42.40 Aligned_cols=25 Identities=36% Similarity=0.634 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
++.+.|.+|+||||++..+......
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4788999999999999999998764
No 495
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=93.52 E-value=0.13 Score=55.66 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=35.7
Q ss_pred CCccchHHHHHHHHHHcC--CCCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 154 LPFESRMFTLRNILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
+..+.|.+..+.|.+... ..+..+|.|+|++|+||||+|+.++.....
T Consensus 369 P~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred ChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 345566666666666554 234458999999999999999999998764
No 496
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=93.50 E-value=0.4 Score=49.98 Aligned_cols=89 Identities=16% Similarity=0.266 Sum_probs=49.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCC-------CCcCCChhh----
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGL-------KFHEESESG---- 241 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-------~~~~~~~~~---- 241 (559)
..-..++|+|..|+|||||++.+...... -..++++.-....++.++..+.+..-+. ...+.+...
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~~~---~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~ 232 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNTSA---DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKG 232 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcccCC---CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHH
Confidence 34468999999999999999988875432 1234444333333455444332221111 111111111
Q ss_pred --hHHHHHHHH-HcCCeEEEEEeCCC
Q 043056 242 --RANSLFKRI-KAEKKILIILDNIW 264 (559)
Q Consensus 242 --~~~~l~~~l-~~~kr~LlVlDdv~ 264 (559)
.+..+.+.+ .++++.||++||+-
T Consensus 233 ~~~a~~iAEyfr~~g~~Vll~~Dslt 258 (438)
T PRK07721 233 AYTATAIAEYFRDQGLNVMLMMDSVT 258 (438)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeChH
Confidence 122333444 24899999999984
No 497
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=93.50 E-value=0.068 Score=53.13 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.+|.+.|++|+||||+|+.+....
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578899999999999999998865
No 498
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=93.46 E-value=0.076 Score=49.88 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.+|+|.|+.|+||||+++.+.....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999998765
No 499
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=93.45 E-value=0.28 Score=54.34 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
-..|+|+|.+|+|||||++.+..-..
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~gly~ 524 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLGLYK 524 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35799999999999999999876543
No 500
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.43 E-value=0.31 Score=50.31 Aligned_cols=88 Identities=22% Similarity=0.382 Sum_probs=49.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCC-cCHHHHHHHHHHHhCCC-------CcCCChhh----
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQN-QDIRKLQGEIADKLGLK-------FHEESESG---- 241 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~---- 241 (559)
.-..++|.|..|+|||||++.+...... +..+..-++.. ....++..+.+.+-+.. ..+.+...
T Consensus 136 ~Gqri~I~G~sG~GKTtLl~~i~~~~~~----~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~ 211 (413)
T TIGR03497 136 KGQRVGIFAGSGVGKSTLLGMIARNAKA----DINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKA 211 (413)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHH
Confidence 3468999999999999999888765432 23233333332 24445555444332211 11111111
Q ss_pred --hHHHHHHHH-HcCCeEEEEEeCCCc
Q 043056 242 --RANSLFKRI-KAEKKILIILDNIWE 265 (559)
Q Consensus 242 --~~~~l~~~l-~~~kr~LlVlDdv~~ 265 (559)
....+-+.+ .++++.||++||+-.
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (413)
T TIGR03497 212 AFTATAIAEYFRDQGKDVLLMMDSVTR 238 (413)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcCcHH
Confidence 122333444 248999999999843
Done!