Query 043056
Match_columns 559
No_of_seqs 342 out of 2904
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 21:49:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043056.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043056hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.4E-51 4.7E-56 443.0 20.0 385 157-559 131-545 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 6.1E-40 2.1E-44 387.1 30.1 313 150-485 120-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 9.5E-39 3.3E-43 348.4 20.4 279 156-478 130-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 2.3E-36 7.8E-41 329.0 28.3 308 150-483 120-450 (591)
5 2qen_A Walker-type ATPase; unk 99.7 1.6E-16 5.4E-21 160.6 23.8 292 150-479 8-349 (350)
6 2fna_A Conserved hypothetical 99.7 5.1E-16 1.7E-20 157.3 23.1 291 150-478 9-356 (357)
7 1w5s_A Origin recognition comp 99.7 7.4E-15 2.5E-19 151.9 22.6 304 154-474 22-387 (412)
8 3qfl_A MLA10; coiled-coil, (CC 99.5 3.2E-14 1.1E-18 117.8 9.3 78 10-96 4-82 (115)
9 2qby_B CDC6 homolog 3, cell di 99.5 2E-12 6.7E-17 132.3 22.7 283 154-460 20-339 (384)
10 2qby_A CDC6 homolog 1, cell di 99.5 5E-12 1.7E-16 129.1 23.3 286 154-460 20-348 (386)
11 2v1u_A Cell division control p 99.4 2.8E-11 9.6E-16 123.7 24.9 286 154-460 19-351 (387)
12 1fnn_A CDC6P, cell division co 99.4 3.5E-11 1.2E-15 123.2 24.1 309 154-484 17-386 (389)
13 1njg_A DNA polymerase III subu 99.4 5.8E-12 2E-16 119.8 15.3 199 151-357 20-231 (250)
14 2chg_A Replication factor C sm 99.4 8.5E-12 2.9E-16 116.9 14.7 190 151-356 14-206 (226)
15 1hqc_A RUVB; extended AAA-ATPa 99.2 2.1E-10 7.2E-15 114.3 14.2 177 151-357 9-214 (324)
16 1sxj_B Activator 1 37 kDa subu 99.1 1.6E-10 5.6E-15 114.9 11.3 193 150-357 17-213 (323)
17 1iqp_A RFCS; clamp loader, ext 99.0 6.5E-10 2.2E-14 110.8 9.7 191 150-358 21-216 (327)
18 2chq_A Replication factor C sm 98.9 9.6E-09 3.3E-13 101.8 13.3 188 151-356 14-206 (319)
19 3te6_A Regulatory protein SIR3 98.9 4.7E-08 1.6E-12 95.7 15.8 169 156-324 22-212 (318)
20 1jr3_A DNA polymerase III subu 98.8 2.5E-08 8.7E-13 101.2 14.2 197 151-355 13-222 (373)
21 1jbk_A CLPB protein; beta barr 98.7 2.4E-08 8.3E-13 90.7 8.4 155 151-319 19-194 (195)
22 1sxj_D Activator 1 41 kDa subu 98.6 9.7E-08 3.3E-12 96.0 10.4 198 150-354 33-235 (353)
23 3bos_A Putative DNA replicatio 98.6 9.3E-08 3.2E-12 90.4 8.4 175 153-355 27-218 (242)
24 3h4m_A Proteasome-activating n 98.6 7.4E-07 2.5E-11 86.7 15.0 181 151-353 14-230 (285)
25 3pvs_A Replication-associated 98.6 7.4E-07 2.5E-11 92.1 14.8 181 150-355 22-216 (447)
26 1sxj_A Activator 1 95 kDa subu 98.6 3.9E-07 1.3E-11 96.4 13.0 209 150-371 35-273 (516)
27 1d2n_A N-ethylmaleimide-sensit 98.5 1.9E-06 6.4E-11 83.2 16.7 196 155-375 34-264 (272)
28 2qz4_A Paraplegin; AAA+, SPG7, 98.5 2.4E-06 8.3E-11 81.8 17.2 181 153-353 5-221 (262)
29 1sxj_E Activator 1 40 kDa subu 98.5 5.5E-07 1.9E-11 90.6 11.1 197 151-354 11-237 (354)
30 3u61_B DNA polymerase accessor 98.5 8.3E-07 2.8E-11 88.1 12.2 181 150-352 22-214 (324)
31 1xwi_A SKD1 protein; VPS4B, AA 98.5 1.3E-05 4.4E-10 79.3 20.1 183 152-354 10-223 (322)
32 3d8b_A Fidgetin-like protein 1 98.4 5.6E-06 1.9E-10 83.2 17.6 183 152-355 82-296 (357)
33 3pfi_A Holliday junction ATP-d 98.4 2E-06 6.8E-11 85.9 13.8 174 152-354 27-227 (338)
34 3eie_A Vacuolar protein sortin 98.4 5.2E-06 1.8E-10 82.2 16.3 182 151-353 15-227 (322)
35 1sxj_C Activator 1 40 kDa subu 98.4 2.2E-06 7.6E-11 85.6 12.8 184 150-350 21-208 (340)
36 1a5t_A Delta prime, HOLB; zinc 98.4 5.5E-06 1.9E-10 82.5 15.3 170 160-353 8-204 (334)
37 3uk6_A RUVB-like 2; hexameric 98.4 3.6E-06 1.2E-10 85.0 13.7 196 153-353 43-302 (368)
38 3vfd_A Spastin; ATPase, microt 98.3 1.5E-05 5.3E-10 81.0 18.3 183 151-354 112-326 (389)
39 3syl_A Protein CBBX; photosynt 98.3 7.2E-07 2.5E-11 87.9 7.7 153 156-324 33-218 (309)
40 2zan_A Vacuolar protein sortin 98.3 2E-05 6.8E-10 81.6 18.7 182 152-353 132-344 (444)
41 3b9p_A CG5977-PA, isoform A; A 98.3 2.4E-05 8.2E-10 76.4 17.9 183 151-354 18-233 (297)
42 2qp9_X Vacuolar protein sortin 98.3 1.2E-05 4.1E-10 80.7 15.4 182 152-354 49-261 (355)
43 2z4s_A Chromosomal replication 98.2 4.5E-06 1.5E-10 86.3 11.4 173 163-353 117-305 (440)
44 2p65_A Hypothetical protein PF 98.2 3.3E-06 1.1E-10 76.0 8.5 51 151-201 19-69 (187)
45 4b4t_J 26S protease regulatory 98.2 2.2E-05 7.5E-10 78.8 15.1 174 152-347 146-354 (405)
46 3pxg_A Negative regulator of g 98.2 8.2E-06 2.8E-10 85.1 12.3 151 152-324 178-339 (468)
47 3cf0_A Transitional endoplasmi 98.2 3.5E-05 1.2E-09 75.4 16.0 176 152-349 13-223 (301)
48 4b4t_L 26S protease subunit RP 98.2 4.9E-05 1.7E-09 77.5 16.8 173 153-347 180-387 (437)
49 1qvr_A CLPB protein; coiled co 98.1 1.3E-05 4.5E-10 90.0 11.9 159 150-323 166-345 (854)
50 4b4t_M 26S protease regulatory 98.1 4.3E-05 1.5E-09 77.9 14.5 174 152-347 179-387 (434)
51 4b4t_H 26S protease regulatory 98.1 0.00011 3.6E-09 74.9 17.0 173 153-347 208-415 (467)
52 1l8q_A Chromosomal replication 98.1 1.3E-05 4.5E-10 79.4 10.1 166 163-349 23-203 (324)
53 4b4t_I 26S protease regulatory 98.0 0.00018 6.2E-09 72.5 17.6 174 152-347 180-388 (437)
54 2gno_A DNA polymerase III, gam 97.9 2.8E-05 9.6E-10 76.0 9.8 144 160-323 3-152 (305)
55 1r6b_X CLPA protein; AAA+, N-t 97.9 0.0001 3.5E-09 81.9 15.4 159 151-323 183-362 (758)
56 1lv7_A FTSH; alpha/beta domain 97.9 0.00012 4E-09 69.8 13.8 178 152-351 10-222 (257)
57 3n70_A Transport activator; si 97.9 5.1E-06 1.8E-10 71.8 3.6 46 155-200 2-49 (145)
58 4b4t_K 26S protease regulatory 97.9 0.00025 8.5E-09 72.2 16.1 174 152-347 170-379 (428)
59 3ec2_A DNA replication protein 97.9 1E-05 3.4E-10 72.7 5.1 117 159-292 19-143 (180)
60 3pxi_A Negative regulator of g 97.9 4.4E-05 1.5E-09 84.7 11.3 152 151-324 177-339 (758)
61 1in4_A RUVB, holliday junction 97.9 0.0012 4.1E-08 65.4 20.2 174 151-353 22-222 (334)
62 2ce7_A Cell division protein F 97.8 0.0002 6.7E-09 74.2 14.4 173 153-347 15-221 (476)
63 2w58_A DNAI, primosome compone 97.8 2.7E-05 9.4E-10 71.2 6.2 115 160-292 35-159 (202)
64 3hu3_A Transitional endoplasmi 97.8 0.00024 8.4E-09 74.0 13.7 180 152-353 202-414 (489)
65 4fcw_A Chaperone protein CLPB; 97.7 0.00011 3.8E-09 72.0 10.0 104 156-266 19-131 (311)
66 2r62_A Cell division protease 97.7 2.7E-05 9.3E-10 74.7 5.3 129 176-324 45-197 (268)
67 1ofh_A ATP-dependent HSL prote 97.6 0.00021 7.3E-09 69.8 10.8 46 155-200 16-75 (310)
68 2c9o_A RUVB-like 1; hexameric 97.5 0.00046 1.6E-08 71.6 12.0 48 153-200 36-88 (456)
69 3cf2_A TER ATPase, transitiona 97.4 0.00073 2.5E-08 74.1 12.5 153 174-348 237-408 (806)
70 3m6a_A ATP-dependent protease 97.4 0.00066 2.3E-08 71.9 10.6 156 156-323 83-266 (543)
71 3co5_A Putative two-component 97.3 2.5E-05 8.7E-10 67.2 -0.5 45 155-199 5-51 (143)
72 3pxi_A Negative regulator of g 97.3 0.0002 6.9E-09 79.4 6.3 148 155-323 492-675 (758)
73 1ixz_A ATP-dependent metallopr 97.3 0.0037 1.3E-07 59.1 13.7 148 178-347 52-221 (254)
74 1qvr_A CLPB protein; coiled co 97.2 0.0023 7.9E-08 71.8 13.2 46 155-200 559-613 (854)
75 1ojl_A Transcriptional regulat 97.2 0.0003 1E-08 68.7 5.1 46 155-200 3-50 (304)
76 2x8a_A Nuclear valosin-contain 97.2 0.0052 1.8E-07 58.9 13.6 149 153-324 9-192 (274)
77 1iy2_A ATP-dependent metallopr 97.1 0.0055 1.9E-07 58.8 13.7 148 178-347 76-245 (278)
78 3t15_A Ribulose bisphosphate c 97.1 0.00064 2.2E-08 66.0 6.7 28 174-201 35-62 (293)
79 1r6b_X CLPA protein; AAA+, N-t 97.1 0.00088 3E-08 74.3 8.5 56 155-215 459-523 (758)
80 2dhr_A FTSH; AAA+ protein, hex 97.1 0.0041 1.4E-07 64.6 12.6 175 151-347 28-236 (499)
81 3io5_A Recombination and repai 97.0 0.0033 1.1E-07 60.7 10.7 85 177-266 30-123 (333)
82 1n0w_A DNA repair protein RAD5 97.0 0.0054 1.9E-07 57.3 11.6 90 175-265 24-130 (243)
83 2cvh_A DNA repair and recombin 96.8 0.0053 1.8E-07 56.4 10.3 44 175-223 20-63 (220)
84 1jr3_D DNA polymerase III, del 96.8 0.0062 2.1E-07 60.4 11.5 159 173-353 16-184 (343)
85 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.0017 5.7E-08 63.0 6.3 68 176-265 124-193 (331)
86 1v5w_A DMC1, meiotic recombina 96.8 0.0074 2.5E-07 59.8 11.3 59 174-233 121-183 (343)
87 3hr8_A Protein RECA; alpha and 96.8 0.006 2E-07 60.5 10.4 85 175-266 61-151 (356)
88 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.0024 8E-08 59.3 7.2 38 176-215 24-61 (235)
89 2kjq_A DNAA-related protein; s 96.7 0.0024 8.2E-08 55.1 6.2 40 174-215 35-74 (149)
90 2z43_A DNA repair and recombin 96.6 0.007 2.4E-07 59.5 9.5 89 175-264 107-213 (324)
91 1ypw_A Transitional endoplasmi 96.6 0.0088 3E-07 66.4 11.1 151 153-324 203-386 (806)
92 2i1q_A DNA repair and recombin 96.6 0.0085 2.9E-07 58.9 9.9 89 175-264 98-214 (322)
93 2qgz_A Helicase loader, putati 96.5 0.0027 9.4E-08 61.9 6.2 53 159-213 133-189 (308)
94 3lda_A DNA repair protein RAD5 96.5 0.0083 2.8E-07 60.6 9.5 88 176-264 179-283 (400)
95 2zr9_A Protein RECA, recombina 96.5 0.0093 3.2E-07 59.2 9.6 84 175-265 61-150 (349)
96 1xp8_A RECA protein, recombina 96.4 0.012 4.1E-07 58.7 10.0 84 175-265 74-163 (366)
97 2px0_A Flagellar biosynthesis 96.4 0.012 4.2E-07 56.9 9.5 87 174-263 104-191 (296)
98 3dm5_A SRP54, signal recogniti 96.3 0.16 5.3E-06 51.7 17.7 29 174-202 99-127 (443)
99 1u94_A RECA protein, recombina 96.3 0.013 4.5E-07 58.1 9.6 83 175-264 63-151 (356)
100 3kl4_A SRP54, signal recogniti 96.3 0.064 2.2E-06 54.5 14.6 57 174-232 96-153 (433)
101 1rz3_A Hypothetical protein rb 96.3 0.0042 1.4E-07 56.5 5.2 43 159-201 3-48 (201)
102 4a74_A DNA repair and recombin 96.2 0.023 7.7E-07 52.5 10.2 90 175-265 25-136 (231)
103 3c8u_A Fructokinase; YP_612366 96.2 0.0054 1.9E-07 56.0 5.7 41 161-201 6-48 (208)
104 1sky_E F1-ATPase, F1-ATP synth 96.0 0.017 5.9E-07 59.0 8.9 87 177-264 153-255 (473)
105 2bjv_A PSP operon transcriptio 96.0 0.0063 2.1E-07 57.9 5.2 60 154-215 6-67 (265)
106 3bh0_A DNAB-like replicative h 95.9 0.067 2.3E-06 52.2 12.3 62 162-229 57-118 (315)
107 3ice_A Transcription terminati 95.9 0.0082 2.8E-07 59.5 5.6 51 166-217 164-216 (422)
108 1qhx_A CPT, protein (chloramph 95.9 0.0049 1.7E-07 54.6 3.7 25 176-200 4-28 (178)
109 3kb2_A SPBC2 prophage-derived 95.9 0.0052 1.8E-07 54.0 3.7 25 176-200 2-26 (173)
110 3lw7_A Adenylate kinase relate 95.8 0.0053 1.8E-07 54.0 3.6 20 176-195 2-21 (179)
111 2ehv_A Hypothetical protein PH 95.7 0.023 7.9E-07 53.1 7.8 23 175-197 30-52 (251)
112 1pzn_A RAD51, DNA repair and r 95.7 0.03 1E-06 55.6 8.8 68 162-231 119-190 (349)
113 1kgd_A CASK, peripheral plasma 95.7 0.0064 2.2E-07 54.1 3.5 24 176-199 6-29 (180)
114 1ly1_A Polynucleotide kinase; 95.6 0.0073 2.5E-07 53.5 3.7 22 176-197 3-24 (181)
115 3vaa_A Shikimate kinase, SK; s 95.5 0.0083 2.8E-07 54.3 3.9 26 175-200 25-50 (199)
116 1kag_A SKI, shikimate kinase I 95.5 0.0066 2.3E-07 53.4 3.2 25 176-200 5-29 (173)
117 2dr3_A UPF0273 protein PH0284; 95.5 0.054 1.8E-06 50.4 9.6 39 176-216 24-62 (247)
118 1zp6_A Hypothetical protein AT 95.5 0.0084 2.9E-07 53.7 3.7 24 175-198 9-32 (191)
119 3uie_A Adenylyl-sulfate kinase 95.5 0.0099 3.4E-07 53.8 4.2 28 173-200 23-50 (200)
120 3trf_A Shikimate kinase, SK; a 95.5 0.0087 3E-07 53.3 3.8 26 175-200 5-30 (185)
121 2xxa_A Signal recognition part 95.5 0.064 2.2E-06 54.7 10.6 58 174-232 99-157 (433)
122 4akg_A Glutathione S-transfera 95.4 0.17 5.9E-06 62.7 15.9 79 176-264 1268-1346(2695)
123 1nks_A Adenylate kinase; therm 95.4 0.009 3.1E-07 53.5 3.7 26 176-201 2-27 (194)
124 2rhm_A Putative kinase; P-loop 95.4 0.01 3.6E-07 53.1 4.1 27 174-200 4-30 (193)
125 2r44_A Uncharacterized protein 95.4 0.023 7.7E-07 55.9 6.9 44 155-200 28-71 (331)
126 1odf_A YGR205W, hypothetical 3 95.4 0.018 6.2E-07 55.4 6.0 30 172-201 28-57 (290)
127 4eun_A Thermoresistant glucoki 95.4 0.0099 3.4E-07 53.8 3.9 27 173-199 27-53 (200)
128 1g5t_A COB(I)alamin adenosyltr 95.4 0.015 5.2E-07 52.0 5.0 113 175-293 28-164 (196)
129 3tqc_A Pantothenate kinase; bi 95.4 0.05 1.7E-06 53.1 9.0 28 173-200 90-117 (321)
130 1g8p_A Magnesium-chelatase 38 95.4 0.0073 2.5E-07 59.9 3.1 49 152-200 22-70 (350)
131 1vma_A Cell division protein F 95.4 0.051 1.7E-06 52.7 9.0 38 174-213 103-140 (306)
132 1kht_A Adenylate kinase; phosp 95.3 0.0098 3.4E-07 53.2 3.6 26 176-201 4-29 (192)
133 3tau_A Guanylate kinase, GMP k 95.3 0.011 3.6E-07 54.1 3.9 27 174-200 7-33 (208)
134 1ex7_A Guanylate kinase; subst 95.3 0.0088 3E-07 53.5 3.1 24 176-199 2-25 (186)
135 2ze6_A Isopentenyl transferase 95.3 0.011 3.7E-07 55.9 3.9 25 176-200 2-26 (253)
136 3t61_A Gluconokinase; PSI-biol 95.3 0.0084 2.9E-07 54.4 3.1 26 175-200 18-43 (202)
137 2j37_W Signal recognition part 95.2 0.18 6E-06 52.4 13.1 28 174-201 100-127 (504)
138 1fx0_B ATP synthase beta chain 95.2 0.06 2E-06 55.2 9.3 88 176-264 166-276 (498)
139 2yvu_A Probable adenylyl-sulfa 95.2 0.015 5E-07 51.9 4.4 30 173-202 11-40 (186)
140 3iij_A Coilin-interacting nucl 95.2 0.01 3.6E-07 52.6 3.4 26 175-200 11-36 (180)
141 3tr0_A Guanylate kinase, GMP k 95.2 0.011 3.7E-07 53.6 3.5 24 176-199 8-31 (205)
142 2jaq_A Deoxyguanosine kinase; 95.2 0.012 4E-07 53.3 3.7 24 177-200 2-25 (205)
143 1knq_A Gluconate kinase; ALFA/ 95.2 0.013 4.5E-07 51.6 3.9 25 175-199 8-32 (175)
144 2qor_A Guanylate kinase; phosp 95.2 0.011 3.6E-07 53.9 3.3 26 174-199 11-36 (204)
145 3a00_A Guanylate kinase, GMP k 95.1 0.0099 3.4E-07 53.2 3.0 25 176-200 2-26 (186)
146 2hf9_A Probable hydrogenase ni 95.1 0.017 5.7E-07 53.3 4.7 37 164-200 27-63 (226)
147 1gvn_B Zeta; postsegregational 95.1 0.018 6.3E-07 55.4 5.1 26 174-199 32-57 (287)
148 1via_A Shikimate kinase; struc 95.1 0.011 3.7E-07 52.2 3.2 24 177-200 6-29 (175)
149 1tev_A UMP-CMP kinase; ploop, 95.1 0.014 4.7E-07 52.3 3.9 26 175-200 3-28 (196)
150 1ukz_A Uridylate kinase; trans 95.1 0.015 5.2E-07 52.6 4.2 28 173-200 13-40 (203)
151 2ck3_D ATP synthase subunit be 95.1 0.11 3.7E-06 53.0 10.7 88 176-264 154-263 (482)
152 3asz_A Uridine kinase; cytidin 95.1 0.013 4.6E-07 53.4 3.8 27 174-200 5-31 (211)
153 1xjc_A MOBB protein homolog; s 95.1 0.015 5.2E-07 50.9 3.9 29 174-202 3-31 (169)
154 1uf9_A TT1252 protein; P-loop, 95.1 0.014 4.9E-07 52.7 4.0 26 173-198 6-31 (203)
155 3cmu_A Protein RECA, recombina 95.1 0.05 1.7E-06 65.1 9.4 96 162-264 1414-1515(2050)
156 1ye8_A Protein THEP1, hypothet 95.1 0.013 4.5E-07 52.0 3.5 24 177-200 2-25 (178)
157 2c95_A Adenylate kinase 1; tra 95.1 0.015 5E-07 52.2 3.9 27 174-200 8-34 (196)
158 2j41_A Guanylate kinase; GMP, 95.1 0.015 5E-07 52.8 3.9 25 175-199 6-30 (207)
159 2b8t_A Thymidine kinase; deoxy 95.0 0.012 4E-07 54.3 3.2 110 174-292 11-126 (223)
160 2bdt_A BH3686; alpha-beta prot 95.0 0.015 5E-07 52.1 3.7 22 176-197 3-24 (189)
161 3ney_A 55 kDa erythrocyte memb 95.0 0.015 5E-07 52.4 3.7 27 174-200 18-44 (197)
162 3umf_A Adenylate kinase; rossm 95.0 0.017 5.8E-07 53.0 4.2 28 173-200 27-54 (217)
163 1y63_A LMAJ004144AAA protein; 95.0 0.016 5.6E-07 51.6 4.0 25 174-198 9-33 (184)
164 4a1f_A DNAB helicase, replicat 95.0 0.34 1.2E-05 47.4 13.7 62 162-229 35-96 (338)
165 2plr_A DTMP kinase, probable t 95.0 0.017 5.7E-07 52.6 4.1 26 176-201 5-30 (213)
166 2ga8_A Hypothetical 39.9 kDa p 95.0 0.025 8.7E-07 55.6 5.5 40 161-200 6-49 (359)
167 1lvg_A Guanylate kinase, GMP k 95.0 0.012 4E-07 53.3 2.9 24 176-199 5-28 (198)
168 3hws_A ATP-dependent CLP prote 95.0 0.024 8.3E-07 56.6 5.6 45 156-200 17-76 (363)
169 2cdn_A Adenylate kinase; phosp 94.9 0.018 6.2E-07 52.1 4.2 27 174-200 19-45 (201)
170 3cm0_A Adenylate kinase; ATP-b 94.9 0.017 5.8E-07 51.4 3.9 26 175-200 4-29 (186)
171 2iyv_A Shikimate kinase, SK; t 94.9 0.012 4.2E-07 52.3 3.0 25 176-200 3-27 (184)
172 1cke_A CK, MSSA, protein (cyti 94.9 0.015 5.2E-07 53.6 3.7 25 176-200 6-30 (227)
173 1uj2_A Uridine-cytidine kinase 94.9 0.017 5.9E-07 54.4 4.1 28 173-200 20-47 (252)
174 2wsm_A Hydrogenase expression/ 94.9 0.015 5.3E-07 53.3 3.7 40 161-200 16-55 (221)
175 3nbx_X ATPase RAVA; AAA+ ATPas 94.9 0.012 4E-07 61.3 3.1 43 156-200 24-66 (500)
176 3e70_C DPA, signal recognition 94.9 0.29 9.8E-06 47.8 12.9 58 173-232 127-185 (328)
177 1e6c_A Shikimate kinase; phosp 94.9 0.014 4.7E-07 51.3 3.2 25 176-200 3-27 (173)
178 2bwj_A Adenylate kinase 5; pho 94.9 0.016 5.5E-07 52.1 3.7 26 175-200 12-37 (199)
179 1zuh_A Shikimate kinase; alpha 94.9 0.017 5.8E-07 50.5 3.8 26 175-200 7-32 (168)
180 3fwy_A Light-independent proto 94.8 0.016 5.5E-07 56.5 3.7 41 173-215 46-86 (314)
181 2pt5_A Shikimate kinase, SK; a 94.8 0.018 6.1E-07 50.3 3.8 24 177-200 2-25 (168)
182 2bbw_A Adenylate kinase 4, AK4 94.8 0.018 6.2E-07 54.0 3.9 26 175-200 27-52 (246)
183 2if2_A Dephospho-COA kinase; a 94.8 0.016 5.5E-07 52.5 3.4 22 176-197 2-23 (204)
184 4gp7_A Metallophosphoesterase; 94.8 0.015 5E-07 51.3 3.0 21 175-195 9-29 (171)
185 2vli_A Antibiotic resistance p 94.8 0.012 4.2E-07 52.1 2.5 26 175-200 5-30 (183)
186 1qf9_A UMP/CMP kinase, protein 94.7 0.02 6.8E-07 51.2 3.9 26 175-200 6-31 (194)
187 3a4m_A L-seryl-tRNA(SEC) kinas 94.7 0.02 6.8E-07 54.3 4.0 26 175-200 4-29 (260)
188 1aky_A Adenylate kinase; ATP:A 94.7 0.02 6.8E-07 52.6 3.9 26 175-200 4-29 (220)
189 2qt1_A Nicotinamide riboside k 94.7 0.02 6.7E-07 52.1 3.8 26 174-199 20-45 (207)
190 3tlx_A Adenylate kinase 2; str 94.7 0.035 1.2E-06 52.0 5.6 28 173-200 27-54 (243)
191 2pbr_A DTMP kinase, thymidylat 94.7 0.02 6.7E-07 51.3 3.7 24 177-200 2-25 (195)
192 2z0h_A DTMP kinase, thymidylat 94.7 0.057 1.9E-06 48.3 6.9 25 177-201 2-26 (197)
193 1j8m_F SRP54, signal recogniti 94.7 0.11 3.6E-06 50.2 9.1 87 175-263 98-189 (297)
194 1nn5_A Similar to deoxythymidy 94.7 0.021 7.2E-07 52.1 3.9 32 175-207 9-40 (215)
195 3cf2_A TER ATPase, transitiona 94.7 0.044 1.5E-06 60.1 7.0 171 154-346 477-682 (806)
196 2wwf_A Thymidilate kinase, put 94.6 0.021 7E-07 52.0 3.8 32 175-207 10-41 (212)
197 1znw_A Guanylate kinase, GMP k 94.6 0.019 6.5E-07 52.3 3.4 25 175-199 20-44 (207)
198 4e22_A Cytidylate kinase; P-lo 94.6 0.023 7.9E-07 53.5 4.0 27 174-200 26-52 (252)
199 2jeo_A Uridine-cytidine kinase 94.6 0.024 8.1E-07 53.2 4.1 26 174-199 24-49 (245)
200 3aez_A Pantothenate kinase; tr 94.5 0.023 7.9E-07 55.3 4.0 42 173-214 88-129 (312)
201 1ls1_A Signal recognition part 94.5 0.14 4.7E-06 49.4 9.5 88 174-263 97-189 (295)
202 1jjv_A Dephospho-COA kinase; P 94.5 0.021 7.2E-07 51.8 3.5 22 176-197 3-24 (206)
203 1zd8_A GTP:AMP phosphotransfer 94.5 0.022 7.4E-07 52.7 3.6 26 175-200 7-32 (227)
204 1gtv_A TMK, thymidylate kinase 94.5 0.012 4.2E-07 53.7 1.9 26 176-201 1-26 (214)
205 3fb4_A Adenylate kinase; psych 94.5 0.023 8E-07 51.9 3.8 24 177-200 2-25 (216)
206 1z6g_A Guanylate kinase; struc 94.5 0.018 6.1E-07 53.0 3.0 25 175-199 23-47 (218)
207 2p5t_B PEZT; postsegregational 94.5 0.028 9.6E-07 53.0 4.4 27 174-200 31-57 (253)
208 1um8_A ATP-dependent CLP prote 94.5 0.037 1.3E-06 55.5 5.5 26 175-200 72-97 (376)
209 1zak_A Adenylate kinase; ATP:A 94.5 0.021 7.2E-07 52.5 3.4 26 175-200 5-30 (222)
210 1s96_A Guanylate kinase, GMP k 94.5 0.022 7.7E-07 52.4 3.5 26 175-200 16-41 (219)
211 1htw_A HI0065; nucleotide-bind 94.4 0.025 8.6E-07 49.0 3.5 26 174-199 32-57 (158)
212 1tue_A Replication protein E1; 94.4 0.03 1E-06 50.4 4.1 38 163-200 45-83 (212)
213 1rj9_A FTSY, signal recognitio 94.4 0.03 1E-06 54.3 4.5 28 174-201 101-128 (304)
214 2grj_A Dephospho-COA kinase; T 94.3 0.029 9.8E-07 50.4 3.8 26 174-199 11-36 (192)
215 3dl0_A Adenylate kinase; phosp 94.3 0.026 9E-07 51.6 3.7 24 177-200 2-25 (216)
216 2v54_A DTMP kinase, thymidylat 94.3 0.029 9.8E-07 50.7 3.8 25 175-199 4-28 (204)
217 1m7g_A Adenylylsulfate kinase; 94.1 0.035 1.2E-06 50.6 4.1 28 173-200 23-50 (211)
218 2ffh_A Protein (FFH); SRP54, s 94.1 0.16 5.5E-06 51.4 9.3 38 174-213 97-134 (425)
219 3d3q_A TRNA delta(2)-isopenten 94.1 0.032 1.1E-06 54.7 3.9 25 176-200 8-32 (340)
220 1vht_A Dephospho-COA kinase; s 94.1 0.035 1.2E-06 50.9 4.0 23 175-197 4-26 (218)
221 3r20_A Cytidylate kinase; stru 94.1 0.033 1.1E-06 51.6 3.8 26 175-200 9-34 (233)
222 3l0o_A Transcription terminati 94.0 0.02 6.8E-07 56.7 2.3 52 165-217 164-217 (427)
223 2f1r_A Molybdopterin-guanine d 94.0 0.02 6.8E-07 50.4 2.1 27 176-202 3-29 (171)
224 2f6r_A COA synthase, bifunctio 94.0 0.034 1.1E-06 53.4 3.9 25 173-197 73-97 (281)
225 2pez_A Bifunctional 3'-phospho 94.0 0.034 1.2E-06 49.1 3.7 27 175-201 5-31 (179)
226 3exa_A TRNA delta(2)-isopenten 94.0 0.035 1.2E-06 53.6 3.9 25 175-199 3-27 (322)
227 2zts_A Putative uncharacterize 94.0 0.08 2.7E-06 49.3 6.4 47 176-225 31-77 (251)
228 3sr0_A Adenylate kinase; phosp 94.0 0.036 1.2E-06 50.4 3.8 25 176-200 1-25 (206)
229 2onk_A Molybdate/tungstate ABC 93.9 0.033 1.1E-06 52.0 3.5 26 173-199 23-48 (240)
230 2q6t_A DNAB replication FORK h 93.9 0.33 1.1E-05 49.7 11.5 62 162-228 189-250 (444)
231 3vr4_D V-type sodium ATPase su 93.9 0.089 3E-06 53.3 6.8 88 177-264 153-258 (465)
232 3foz_A TRNA delta(2)-isopenten 93.8 0.045 1.5E-06 52.7 4.3 27 174-200 9-35 (316)
233 3ake_A Cytidylate kinase; CMP 93.8 0.039 1.3E-06 50.0 3.8 25 176-200 3-27 (208)
234 2c61_A A-type ATP synthase non 93.8 0.064 2.2E-06 54.7 5.6 88 176-263 153-258 (469)
235 3lnc_A Guanylate kinase, GMP k 93.8 0.022 7.5E-07 52.8 2.1 24 176-199 28-52 (231)
236 1np6_A Molybdopterin-guanine d 93.8 0.065 2.2E-06 47.2 5.0 27 175-201 6-32 (174)
237 3crm_A TRNA delta(2)-isopenten 93.8 0.039 1.3E-06 53.7 3.8 26 175-200 5-30 (323)
238 2i3b_A HCR-ntpase, human cance 93.8 0.033 1.1E-06 49.9 3.1 24 177-200 3-26 (189)
239 2r6a_A DNAB helicase, replicat 93.7 0.27 9.1E-06 50.6 10.4 61 162-227 192-252 (454)
240 1a7j_A Phosphoribulokinase; tr 93.7 0.022 7.6E-07 54.9 2.0 27 174-200 4-30 (290)
241 1sq5_A Pantothenate kinase; P- 93.7 0.041 1.4E-06 53.5 3.9 28 173-200 78-105 (308)
242 3a8t_A Adenylate isopentenyltr 93.7 0.036 1.2E-06 54.1 3.4 27 174-200 39-65 (339)
243 3end_A Light-independent proto 93.7 0.09 3.1E-06 51.0 6.3 43 172-216 38-80 (307)
244 3tif_A Uncharacterized ABC tra 93.6 0.036 1.2E-06 51.6 3.2 25 175-199 31-55 (235)
245 2xb4_A Adenylate kinase; ATP-b 93.6 0.042 1.4E-06 50.6 3.7 24 177-200 2-25 (223)
246 3lv8_A DTMP kinase, thymidylat 93.6 0.12 4.2E-06 47.9 6.8 36 175-211 27-62 (236)
247 1ak2_A Adenylate kinase isoenz 93.6 0.048 1.6E-06 50.6 4.1 26 175-200 16-41 (233)
248 1e4v_A Adenylate kinase; trans 93.6 0.042 1.4E-06 50.2 3.6 24 177-200 2-25 (214)
249 3b9q_A Chloroplast SRP recepto 93.6 0.046 1.6E-06 52.9 4.1 28 174-201 99-126 (302)
250 3nwj_A ATSK2; P loop, shikimat 93.6 0.036 1.2E-06 52.0 3.2 25 176-200 49-73 (250)
251 3be4_A Adenylate kinase; malar 93.6 0.044 1.5E-06 50.2 3.6 25 176-200 6-30 (217)
252 2pcj_A ABC transporter, lipopr 93.5 0.033 1.1E-06 51.4 2.7 24 176-199 31-54 (224)
253 3cmw_A Protein RECA, recombina 93.5 0.16 5.5E-06 60.0 9.0 85 175-266 732-822 (1706)
254 4tmk_A Protein (thymidylate ki 93.5 0.14 4.6E-06 46.8 6.8 52 176-228 4-55 (213)
255 3p32_A Probable GTPase RV1496/ 93.5 0.095 3.3E-06 52.0 6.3 39 163-201 65-105 (355)
256 3b85_A Phosphate starvation-in 93.4 0.033 1.1E-06 50.7 2.5 23 176-198 23-45 (208)
257 1cr0_A DNA primase/helicase; R 93.3 0.14 4.9E-06 49.2 7.1 50 176-228 36-85 (296)
258 2cbz_A Multidrug resistance-as 93.3 0.039 1.3E-06 51.4 2.9 25 176-200 32-56 (237)
259 3k1j_A LON protease, ATP-depen 93.3 0.037 1.3E-06 59.3 3.1 47 152-200 39-85 (604)
260 3cmw_A Protein RECA, recombina 93.3 0.19 6.6E-06 59.4 9.1 83 175-264 1431-1519(1706)
261 4eaq_A DTMP kinase, thymidylat 93.2 0.1 3.4E-06 48.3 5.6 28 174-201 25-52 (229)
262 2eyu_A Twitching motility prot 93.2 0.053 1.8E-06 51.3 3.7 27 174-200 24-50 (261)
263 3gfo_A Cobalt import ATP-bindi 93.2 0.04 1.4E-06 52.5 2.8 24 176-199 35-58 (275)
264 3gmt_A Adenylate kinase; ssgci 93.2 0.3 1E-05 44.9 8.6 25 176-200 9-33 (230)
265 3upu_A ATP-dependent DNA helic 93.2 0.15 5.2E-06 52.5 7.4 43 159-202 30-72 (459)
266 2d2e_A SUFC protein; ABC-ATPas 93.2 0.049 1.7E-06 51.2 3.4 23 176-198 30-52 (250)
267 1b0u_A Histidine permease; ABC 93.2 0.041 1.4E-06 52.1 2.8 25 175-199 32-56 (262)
268 3cmu_A Protein RECA, recombina 93.1 0.21 7.1E-06 59.9 9.2 96 161-265 369-472 (2050)
269 1ltq_A Polynucleotide kinase; 93.1 0.055 1.9E-06 52.3 3.7 23 176-198 3-25 (301)
270 3gqb_B V-type ATP synthase bet 93.1 0.18 6.2E-06 51.1 7.5 89 176-264 148-261 (464)
271 2og2_A Putative signal recogni 93.1 0.061 2.1E-06 53.3 4.1 28 174-201 156-183 (359)
272 4edh_A DTMP kinase, thymidylat 93.1 0.19 6.4E-06 45.8 7.1 32 175-207 6-37 (213)
273 1ji0_A ABC transporter; ATP bi 93.1 0.044 1.5E-06 51.1 2.9 24 176-199 33-56 (240)
274 1mv5_A LMRA, multidrug resista 93.0 0.047 1.6E-06 51.1 3.0 25 175-199 28-52 (243)
275 4g1u_C Hemin import ATP-bindin 93.0 0.044 1.5E-06 52.0 2.8 26 175-200 37-62 (266)
276 1g6h_A High-affinity branched- 93.0 0.045 1.5E-06 51.7 2.9 24 176-199 34-57 (257)
277 2pze_A Cystic fibrosis transme 93.0 0.045 1.6E-06 50.7 2.8 24 176-199 35-58 (229)
278 2zu0_C Probable ATP-dependent 93.0 0.053 1.8E-06 51.5 3.4 24 175-198 46-69 (267)
279 3ld9_A DTMP kinase, thymidylat 93.0 0.13 4.4E-06 47.2 5.8 30 172-201 18-47 (223)
280 1sgw_A Putative ABC transporte 93.0 0.039 1.3E-06 50.5 2.3 24 176-199 36-59 (214)
281 2olj_A Amino acid ABC transpor 93.0 0.046 1.6E-06 51.8 2.8 25 175-199 50-74 (263)
282 2ff7_A Alpha-hemolysin translo 92.9 0.047 1.6E-06 51.2 2.9 24 176-199 36-59 (247)
283 3mfy_A V-type ATP synthase alp 92.9 0.22 7.7E-06 51.5 7.9 47 176-226 228-275 (588)
284 1zu4_A FTSY; GTPase, signal re 92.9 0.076 2.6E-06 51.8 4.3 38 174-213 104-141 (320)
285 1oix_A RAS-related protein RAB 92.9 0.061 2.1E-06 48.0 3.4 25 175-199 29-53 (191)
286 2qmh_A HPR kinase/phosphorylas 92.9 0.051 1.7E-06 48.7 2.8 25 175-199 34-58 (205)
287 2ghi_A Transport protein; mult 92.8 0.051 1.7E-06 51.4 2.9 24 176-199 47-70 (260)
288 1vpl_A ABC transporter, ATP-bi 92.8 0.051 1.7E-06 51.3 2.8 24 176-199 42-65 (256)
289 3bgw_A DNAB-like replicative h 92.8 0.42 1.4E-05 48.9 10.0 61 162-228 186-246 (444)
290 3eph_A TRNA isopentenyltransfe 92.8 0.071 2.4E-06 53.3 4.0 25 176-200 3-27 (409)
291 1g41_A Heat shock protein HSLU 92.8 0.065 2.2E-06 54.6 3.7 46 156-201 17-76 (444)
292 1yrb_A ATP(GTP)binding protein 92.8 0.085 2.9E-06 49.7 4.4 27 174-200 13-39 (262)
293 2ixe_A Antigen peptide transpo 92.7 0.052 1.8E-06 51.7 2.9 25 175-199 45-69 (271)
294 2qe7_A ATP synthase subunit al 92.7 0.15 5.1E-06 52.3 6.3 85 176-264 163-264 (502)
295 2v9p_A Replication protein E1; 92.7 0.071 2.4E-06 51.5 3.8 26 174-199 125-150 (305)
296 3vr4_A V-type sodium ATPase ca 92.7 0.3 1E-05 50.7 8.6 46 176-225 233-279 (600)
297 2qi9_C Vitamin B12 import ATP- 92.6 0.054 1.9E-06 50.8 2.8 24 176-199 27-50 (249)
298 3zvl_A Bifunctional polynucleo 92.6 0.058 2E-06 54.9 3.2 28 172-199 255-282 (416)
299 2r9v_A ATP synthase subunit al 92.6 0.15 5.1E-06 52.3 6.2 85 176-264 176-277 (515)
300 1g8f_A Sulfate adenylyltransfe 92.6 0.13 4.3E-06 53.5 5.7 47 155-201 373-421 (511)
301 1q3t_A Cytidylate kinase; nucl 92.6 0.085 2.9E-06 49.0 4.1 27 174-200 15-41 (236)
302 2ocp_A DGK, deoxyguanosine kin 92.6 0.081 2.8E-06 49.3 3.9 26 175-200 2-27 (241)
303 2nq2_C Hypothetical ABC transp 92.6 0.056 1.9E-06 50.8 2.8 24 176-199 32-55 (253)
304 2yz2_A Putative ABC transporte 92.6 0.056 1.9E-06 51.3 2.9 24 176-199 34-57 (266)
305 1nlf_A Regulatory protein REPA 92.5 0.064 2.2E-06 51.3 3.2 26 175-200 30-55 (279)
306 2ihy_A ABC transporter, ATP-bi 92.5 0.057 1.9E-06 51.6 2.8 24 176-199 48-71 (279)
307 1q57_A DNA primase/helicase; d 92.5 0.39 1.3E-05 50.1 9.5 62 163-229 232-293 (503)
308 2wji_A Ferrous iron transport 92.5 0.084 2.9E-06 45.7 3.7 23 176-198 4-26 (165)
309 2ged_A SR-beta, signal recogni 92.4 0.16 5.4E-06 45.1 5.6 26 174-199 47-72 (193)
310 2f9l_A RAB11B, member RAS onco 92.4 0.079 2.7E-06 47.6 3.6 24 176-199 6-29 (199)
311 2yhs_A FTSY, cell division pro 92.4 0.086 2.9E-06 54.2 4.1 28 174-201 292-319 (503)
312 3sop_A Neuronal-specific septi 92.4 0.074 2.5E-06 50.6 3.4 24 177-200 4-27 (270)
313 1svm_A Large T antigen; AAA+ f 92.3 0.083 2.8E-06 52.7 3.9 27 173-199 167-193 (377)
314 2dyk_A GTP-binding protein; GT 92.2 0.095 3.3E-06 44.8 3.7 24 176-199 2-25 (161)
315 1u0j_A DNA replication protein 92.2 0.15 5.2E-06 48.0 5.2 37 163-199 90-128 (267)
316 3io3_A DEHA2D07832P; chaperone 92.1 0.21 7.1E-06 49.3 6.4 47 172-220 15-63 (348)
317 3hjn_A DTMP kinase, thymidylat 92.1 0.29 1E-05 43.9 6.9 49 177-227 2-50 (197)
318 4gzl_A RAS-related C3 botulinu 92.1 0.096 3.3E-06 47.2 3.7 36 164-199 19-54 (204)
319 2zej_A Dardarin, leucine-rich 92.0 0.077 2.6E-06 46.9 2.9 21 177-197 4-24 (184)
320 2ck3_A ATP synthase subunit al 92.0 0.23 7.9E-06 51.0 6.7 89 176-264 163-272 (510)
321 2pjz_A Hypothetical protein ST 92.0 0.073 2.5E-06 50.3 2.8 24 176-199 31-54 (263)
322 2vp4_A Deoxynucleoside kinase; 91.9 0.069 2.3E-06 49.4 2.6 25 174-198 19-43 (230)
323 1nij_A Hypothetical protein YJ 91.9 0.082 2.8E-06 51.6 3.2 26 174-199 3-28 (318)
324 3kta_A Chromosome segregation 91.8 0.099 3.4E-06 46.2 3.4 25 176-200 27-51 (182)
325 2orw_A Thymidine kinase; TMTK, 91.8 0.11 3.9E-06 46.1 3.8 109 176-292 4-113 (184)
326 3fvq_A Fe(3+) IONS import ATP- 91.8 0.088 3E-06 52.1 3.3 24 176-199 31-54 (359)
327 3nh6_A ATP-binding cassette SU 91.8 0.067 2.3E-06 51.8 2.4 26 174-199 79-104 (306)
328 2ce2_X GTPase HRAS; signaling 91.8 0.097 3.3E-06 44.8 3.2 23 177-199 5-27 (166)
329 2qtf_A Protein HFLX, GTP-bindi 91.8 1.3 4.6E-05 43.8 11.9 25 174-198 178-202 (364)
330 1z2a_A RAS-related protein RAB 91.7 0.1 3.5E-06 44.9 3.3 25 175-199 5-29 (168)
331 2wjg_A FEOB, ferrous iron tran 91.7 0.12 3.9E-06 45.7 3.7 24 175-198 7-30 (188)
332 1fzq_A ADP-ribosylation factor 91.6 0.15 5.2E-06 44.8 4.5 26 173-198 14-39 (181)
333 3iqw_A Tail-anchored protein t 91.6 0.23 7.8E-06 48.7 6.0 48 172-221 13-60 (334)
334 2bbs_A Cystic fibrosis transme 91.6 0.083 2.8E-06 50.7 2.8 25 175-199 64-88 (290)
335 3tui_C Methionine import ATP-b 91.6 0.099 3.4E-06 51.8 3.4 25 175-199 54-78 (366)
336 3kjh_A CO dehydrogenase/acetyl 91.5 0.21 7.2E-06 46.4 5.5 43 177-221 2-44 (254)
337 1moz_A ARL1, ADP-ribosylation 91.5 0.12 4.1E-06 45.3 3.6 34 164-197 6-40 (183)
338 1cp2_A CP2, nitrogenase iron p 91.5 0.13 4.5E-06 48.6 4.1 38 176-215 2-39 (269)
339 1z47_A CYSA, putative ABC-tran 91.5 0.1 3.5E-06 51.6 3.4 24 176-199 42-65 (355)
340 2r8r_A Sensor protein; KDPD, P 91.5 0.16 5.5E-06 46.5 4.4 38 176-215 7-44 (228)
341 2v3c_C SRP54, signal recogniti 91.4 0.079 2.7E-06 54.0 2.6 28 174-201 98-125 (432)
342 1nrj_B SR-beta, signal recogni 91.3 0.14 4.7E-06 46.6 3.9 27 173-199 10-36 (218)
343 3llm_A ATP-dependent RNA helic 91.3 0.46 1.6E-05 43.8 7.6 23 176-198 77-99 (235)
344 3fdi_A Uncharacterized protein 91.3 0.13 4.4E-06 46.5 3.7 26 176-201 7-32 (201)
345 2fz4_A DNA repair protein RAD2 91.3 0.9 3.1E-05 42.0 9.6 38 159-199 95-132 (237)
346 2h92_A Cytidylate kinase; ross 91.3 0.11 3.8E-06 47.4 3.2 25 176-200 4-28 (219)
347 2yyz_A Sugar ABC transporter, 91.3 0.11 3.8E-06 51.4 3.4 25 175-199 29-53 (359)
348 2lkc_A Translation initiation 91.2 0.12 4.3E-06 44.9 3.4 26 173-198 6-31 (178)
349 3rlf_A Maltose/maltodextrin im 91.2 0.11 3.8E-06 51.7 3.4 24 176-199 30-53 (381)
350 3con_A GTPase NRAS; structural 91.2 0.12 4.1E-06 45.7 3.3 24 176-199 22-45 (190)
351 3oaa_A ATP synthase subunit al 91.2 0.59 2E-05 47.8 8.6 85 176-264 163-264 (513)
352 1u8z_A RAS-related protein RAL 91.2 0.13 4.3E-06 44.2 3.3 24 176-199 5-28 (168)
353 2it1_A 362AA long hypothetical 91.2 0.11 3.9E-06 51.4 3.4 25 175-199 29-53 (362)
354 2e87_A Hypothetical protein PH 91.1 1.4 4.9E-05 43.4 11.5 26 173-198 165-190 (357)
355 1tq4_A IIGP1, interferon-induc 91.1 0.12 4.2E-06 52.1 3.6 25 174-198 68-92 (413)
356 1r8s_A ADP-ribosylation factor 91.1 0.13 4.6E-06 44.0 3.4 23 177-199 2-24 (164)
357 1kao_A RAP2A; GTP-binding prot 91.1 0.13 4.4E-06 44.1 3.3 24 176-199 4-27 (167)
358 3jvv_A Twitching mobility prot 91.1 0.13 4.6E-06 50.9 3.7 112 174-294 122-233 (356)
359 1g29_1 MALK, maltose transport 91.1 0.12 4.1E-06 51.5 3.4 24 176-199 30-53 (372)
360 1c1y_A RAS-related protein RAP 91.0 0.13 4.5E-06 44.1 3.3 24 176-199 4-27 (167)
361 1v43_A Sugar-binding transport 91.0 0.12 4.1E-06 51.4 3.4 25 175-199 37-61 (372)
362 1lw7_A Transcriptional regulat 91.0 0.12 4.2E-06 51.4 3.5 26 175-200 170-195 (365)
363 1f6b_A SAR1; gtpases, N-termin 91.0 0.18 6.1E-06 45.2 4.2 25 173-197 23-47 (198)
364 1z08_A RAS-related protein RAB 90.9 0.13 4.6E-06 44.3 3.3 24 176-199 7-30 (170)
365 3cr8_A Sulfate adenylyltranfer 90.9 0.2 6.9E-06 52.6 5.1 28 174-201 368-395 (552)
366 1ek0_A Protein (GTP-binding pr 90.9 0.14 4.7E-06 44.1 3.3 23 177-199 5-27 (170)
367 1zj6_A ADP-ribosylation factor 90.9 0.19 6.5E-06 44.3 4.3 33 165-198 7-39 (187)
368 2nzj_A GTP-binding protein REM 90.9 0.16 5.6E-06 43.9 3.8 24 175-198 4-27 (175)
369 1p5z_B DCK, deoxycytidine kina 90.9 0.074 2.5E-06 50.3 1.6 26 174-199 23-48 (263)
370 2ewv_A Twitching motility prot 90.8 0.15 5.2E-06 50.8 3.9 28 173-200 134-161 (372)
371 1z0j_A RAB-22, RAS-related pro 90.8 0.14 4.8E-06 44.1 3.3 24 176-199 7-30 (170)
372 2yv5_A YJEQ protein; hydrolase 90.8 0.21 7.3E-06 48.2 4.8 34 163-200 156-189 (302)
373 1fx0_A ATP synthase alpha chai 90.8 0.15 5.2E-06 52.3 3.9 85 176-264 164-265 (507)
374 3d31_A Sulfate/molybdate ABC t 90.8 0.1 3.5E-06 51.5 2.6 24 176-199 27-50 (348)
375 1m7b_A RND3/RHOE small GTP-bin 90.8 0.14 4.7E-06 45.2 3.2 25 175-199 7-31 (184)
376 3ihw_A Centg3; RAS, centaurin, 90.8 0.14 4.8E-06 45.3 3.3 26 174-199 19-44 (184)
377 1tf7_A KAIC; homohexamer, hexa 90.7 0.33 1.1E-05 50.9 6.7 37 176-214 282-318 (525)
378 3tmk_A Thymidylate kinase; pho 90.7 0.36 1.2E-05 44.0 6.1 27 175-201 5-31 (216)
379 2gj8_A MNME, tRNA modification 90.7 0.13 4.5E-06 44.9 3.0 23 176-198 5-27 (172)
380 3f9v_A Minichromosome maintena 90.7 0.077 2.6E-06 56.6 1.8 23 177-199 329-351 (595)
381 3q85_A GTP-binding protein REM 90.7 0.14 4.8E-06 44.2 3.1 22 176-197 3-24 (169)
382 2fn4_A P23, RAS-related protei 90.7 0.18 6.3E-06 43.9 3.9 26 174-199 8-33 (181)
383 1m8p_A Sulfate adenylyltransfe 90.6 0.29 1E-05 51.7 6.1 29 173-201 394-422 (573)
384 2afh_E Nitrogenase iron protei 90.6 0.17 5.8E-06 48.5 4.0 38 176-215 3-40 (289)
385 2erx_A GTP-binding protein DI- 90.6 0.12 4.3E-06 44.5 2.8 23 176-198 4-26 (172)
386 1wms_A RAB-9, RAB9, RAS-relate 90.6 0.15 5.1E-06 44.4 3.3 25 175-199 7-31 (177)
387 3q72_A GTP-binding protein RAD 90.6 0.13 4.5E-06 44.2 2.9 21 177-197 4-24 (166)
388 2www_A Methylmalonic aciduria 90.6 0.17 5.8E-06 50.1 4.0 27 174-200 73-99 (349)
389 1ky3_A GTP-binding protein YPT 90.6 0.18 6.1E-06 44.0 3.8 26 174-199 7-32 (182)
390 1g16_A RAS-related protein SEC 90.6 0.15 5.1E-06 44.0 3.2 24 176-199 4-27 (170)
391 2axn_A 6-phosphofructo-2-kinas 90.5 0.18 6E-06 52.8 4.2 29 173-201 33-61 (520)
392 3gqb_A V-type ATP synthase alp 90.5 0.29 9.9E-06 50.7 5.6 46 176-225 222-268 (578)
393 3cwq_A Para family chromosome 90.5 0.39 1.4E-05 43.4 6.2 43 177-222 2-45 (209)
394 1svi_A GTP-binding protein YSX 90.5 0.17 5.8E-06 44.9 3.6 26 173-198 21-46 (195)
395 1r2q_A RAS-related protein RAB 90.5 0.16 5.4E-06 43.7 3.3 23 176-198 7-29 (170)
396 2qm8_A GTPase/ATPase; G protei 90.4 0.17 5.9E-06 49.7 3.9 28 173-200 53-80 (337)
397 1p9r_A General secretion pathw 90.4 0.29 9.8E-06 49.6 5.5 28 173-200 165-192 (418)
398 1oxx_K GLCV, glucose, ABC tran 90.4 0.097 3.3E-06 51.8 2.0 24 176-199 32-55 (353)
399 4dzz_A Plasmid partitioning pr 90.4 0.34 1.2E-05 43.4 5.6 43 176-220 2-45 (206)
400 1m2o_B GTP-binding protein SAR 90.3 0.16 5.3E-06 45.2 3.2 25 174-198 22-46 (190)
401 3v9p_A DTMP kinase, thymidylat 90.3 0.14 4.7E-06 47.3 2.8 27 175-201 25-51 (227)
402 3c5c_A RAS-like protein 12; GD 90.3 0.16 5.5E-06 44.9 3.3 26 174-199 20-45 (187)
403 3geh_A MNME, tRNA modification 90.3 2.7 9.1E-05 43.1 12.8 88 67-199 161-248 (462)
404 3pqc_A Probable GTP-binding pr 90.3 0.16 5.6E-06 44.9 3.3 26 174-199 22-47 (195)
405 1upt_A ARL1, ADP-ribosylation 90.3 0.21 7.2E-06 43.0 4.0 25 175-199 7-31 (171)
406 1z0f_A RAB14, member RAS oncog 90.3 0.17 5.7E-06 44.0 3.3 25 175-199 15-39 (179)
407 3tqf_A HPR(Ser) kinase; transf 90.2 0.2 6.7E-06 43.7 3.5 23 176-198 17-39 (181)
408 3gd7_A Fusion complex of cysti 90.2 0.15 5.2E-06 51.1 3.3 24 175-198 47-70 (390)
409 2gza_A Type IV secretion syste 90.2 0.13 4.3E-06 51.2 2.7 25 176-200 176-200 (361)
410 2hxs_A RAB-26, RAS-related pro 90.2 0.15 5.1E-06 44.4 2.9 24 175-198 6-29 (178)
411 4dsu_A GTPase KRAS, isoform 2B 90.1 0.17 5.9E-06 44.5 3.3 24 176-199 5-28 (189)
412 3t1o_A Gliding protein MGLA; G 90.1 0.17 5.8E-06 44.9 3.2 25 175-199 14-38 (198)
413 3kkq_A RAS-related protein M-R 90.1 0.16 5.6E-06 44.5 3.1 25 175-199 18-42 (183)
414 2bme_A RAB4A, RAS-related prot 90.0 0.16 5.4E-06 44.7 3.0 25 175-199 10-34 (186)
415 2iwr_A Centaurin gamma 1; ANK 90.0 0.14 4.8E-06 44.7 2.6 23 176-198 8-30 (178)
416 2cjw_A GTP-binding protein GEM 90.0 0.19 6.4E-06 44.8 3.4 24 175-198 6-29 (192)
417 3bc1_A RAS-related protein RAB 90.0 0.18 6.1E-06 44.5 3.3 25 175-199 11-35 (195)
418 2y8e_A RAB-protein 6, GH09086P 90.0 0.18 6.1E-06 43.9 3.2 24 176-199 15-38 (179)
419 2oil_A CATX-8, RAS-related pro 89.9 0.18 6.2E-06 44.7 3.3 25 175-199 25-49 (193)
420 2qnr_A Septin-2, protein NEDD5 89.9 0.14 4.8E-06 49.5 2.6 21 177-197 20-40 (301)
421 1mh1_A RAC1; GTP-binding, GTPa 89.8 0.19 6.4E-06 44.1 3.3 23 176-198 6-28 (186)
422 2b6h_A ADP-ribosylation factor 89.8 0.18 6E-06 45.0 3.1 26 172-197 26-51 (192)
423 4hlc_A DTMP kinase, thymidylat 89.8 0.47 1.6E-05 42.9 6.0 25 176-200 3-27 (205)
424 2a9k_A RAS-related protein RAL 89.8 0.19 6.5E-06 44.0 3.3 25 175-199 18-42 (187)
425 3bwd_D RAC-like GTP-binding pr 89.8 0.19 6.6E-06 43.9 3.3 24 175-198 8-31 (182)
426 3dz8_A RAS-related protein RAB 89.8 0.19 6.6E-06 44.5 3.4 24 176-199 24-47 (191)
427 2efe_B Small GTP-binding prote 89.7 0.19 6.6E-06 43.8 3.3 24 176-199 13-36 (181)
428 1pui_A ENGB, probable GTP-bind 89.7 0.12 4.2E-06 46.6 2.0 25 173-197 24-48 (210)
429 2obl_A ESCN; ATPase, hydrolase 89.7 0.19 6.4E-06 49.6 3.4 25 176-200 72-96 (347)
430 2cxx_A Probable GTP-binding pr 89.7 0.17 5.9E-06 44.6 2.9 22 177-198 3-24 (190)
431 2g6b_A RAS-related protein RAB 89.7 0.2 6.8E-06 43.7 3.3 25 175-199 10-34 (180)
432 3cbq_A GTP-binding protein REM 89.7 0.15 5E-06 45.7 2.4 23 174-196 22-44 (195)
433 3tw8_B RAS-related protein RAB 89.7 0.18 6E-06 44.0 2.9 25 174-198 8-32 (181)
434 3t5g_A GTP-binding protein RHE 89.6 0.19 6.6E-06 43.9 3.2 25 175-199 6-30 (181)
435 1f2t_A RAD50 ABC-ATPase; DNA d 89.5 0.25 8.6E-06 42.1 3.7 25 175-199 23-47 (149)
436 2atv_A RERG, RAS-like estrogen 89.5 0.25 8.5E-06 44.0 3.9 27 173-199 26-52 (196)
437 2ew1_A RAS-related protein RAB 89.5 0.2 6.8E-06 45.1 3.2 25 175-199 26-50 (201)
438 2p67_A LAO/AO transport system 89.5 0.23 7.8E-06 48.9 3.9 29 172-200 53-81 (341)
439 1vg8_A RAS-related protein RAB 89.5 0.2 6.9E-06 44.9 3.3 26 174-199 7-32 (207)
440 2bov_A RAla, RAS-related prote 89.4 0.28 9.4E-06 43.9 4.2 26 174-199 13-38 (206)
441 1gwn_A RHO-related GTP-binding 89.4 0.2 6.9E-06 45.2 3.2 26 174-199 27-52 (205)
442 3ch4_B Pmkase, phosphomevalona 89.4 0.29 9.8E-06 43.9 4.1 27 173-199 9-35 (202)
443 1zd9_A ADP-ribosylation factor 89.3 0.22 7.4E-06 44.1 3.3 25 175-199 22-46 (188)
444 2fh5_B SR-beta, signal recogni 89.3 0.23 7.8E-06 44.9 3.5 26 174-199 6-31 (214)
445 3oes_A GTPase rhebl1; small GT 89.3 0.21 7.1E-06 44.7 3.2 26 174-199 23-48 (201)
446 3clv_A RAB5 protein, putative; 89.3 0.21 7.3E-06 44.4 3.3 25 175-199 7-31 (208)
447 2gks_A Bifunctional SAT/APS ki 89.3 0.44 1.5E-05 50.1 6.1 46 156-201 351-398 (546)
448 1bif_A 6-phosphofructo-2-kinas 89.3 0.24 8.3E-06 51.1 4.1 29 173-201 37-65 (469)
449 2fg5_A RAB-22B, RAS-related pr 89.3 0.21 7.2E-06 44.3 3.2 25 175-199 23-47 (192)
450 2a5j_A RAS-related protein RAB 89.2 0.22 7.6E-06 44.1 3.3 24 176-199 22-45 (191)
451 2gf9_A RAS-related protein RAB 89.2 0.22 7.6E-06 44.0 3.3 25 175-199 22-46 (189)
452 3fkq_A NTRC-like two-domain pr 89.2 0.45 1.5E-05 47.4 5.9 45 173-219 141-186 (373)
453 3hdt_A Putative kinase; struct 89.2 0.28 9.6E-06 45.0 4.0 27 174-200 13-39 (223)
454 3reg_A RHO-like small GTPase; 89.2 0.22 7.7E-06 44.2 3.3 25 175-199 23-47 (194)
455 1ksh_A ARF-like protein 2; sma 89.2 0.25 8.5E-06 43.5 3.6 27 173-199 16-42 (186)
456 1x6v_B Bifunctional 3'-phospho 89.2 0.25 8.6E-06 52.5 4.1 27 174-200 51-77 (630)
457 1c9k_A COBU, adenosylcobinamid 89.2 0.19 6.5E-06 44.3 2.7 34 178-217 2-35 (180)
458 2rcn_A Probable GTPase ENGC; Y 89.1 0.22 7.4E-06 49.2 3.4 24 176-199 216-239 (358)
459 2npi_A Protein CLP1; CLP1-PCF1 89.0 0.18 6.2E-06 51.8 2.9 26 175-200 138-163 (460)
460 3tkl_A RAS-related protein RAB 89.0 0.23 8E-06 44.0 3.3 25 175-199 16-40 (196)
461 2pt7_A CAG-ALFA; ATPase, prote 89.0 0.14 4.7E-06 50.3 1.9 104 176-292 172-275 (330)
462 1z06_A RAS-related protein RAB 89.0 0.24 8.1E-06 43.8 3.3 26 174-199 19-44 (189)
463 2qu8_A Putative nucleolar GTP- 89.0 0.27 9.4E-06 45.0 3.8 26 173-198 27-52 (228)
464 1ega_A Protein (GTP-binding pr 88.9 0.24 8.2E-06 47.8 3.5 25 174-198 7-31 (301)
465 3lxx_A GTPase IMAP family memb 88.9 0.26 8.9E-06 45.6 3.7 27 173-199 27-53 (239)
466 2p5s_A RAS and EF-hand domain 88.9 0.24 8.3E-06 44.2 3.3 26 174-199 27-52 (199)
467 4bas_A ADP-ribosylation factor 88.8 0.26 9E-06 43.7 3.5 25 174-198 16-40 (199)
468 2g3y_A GTP-binding protein GEM 88.8 0.23 7.9E-06 45.2 3.1 23 175-197 37-59 (211)
469 2bcg_Y Protein YP2, GTP-bindin 88.7 0.24 8.2E-06 44.5 3.2 25 175-199 8-32 (206)
470 1x3s_A RAS-related protein RAB 88.7 0.25 8.6E-06 43.7 3.3 24 176-199 16-39 (195)
471 3iev_A GTP-binding protein ERA 88.7 0.25 8.5E-06 47.9 3.5 26 173-198 8-33 (308)
472 2qag_B Septin-6, protein NEDD5 88.7 0.36 1.2E-05 48.8 4.7 36 163-198 30-65 (427)
473 1zbd_A Rabphilin-3A; G protein 88.7 0.21 7.3E-06 44.7 2.8 24 176-199 9-32 (203)
474 2gf0_A GTP-binding protein DI- 88.7 0.33 1.1E-05 43.0 4.1 25 174-198 7-31 (199)
475 3euj_A Chromosome partition pr 88.6 0.25 8.7E-06 50.8 3.5 25 176-200 30-54 (483)
476 4b3f_X DNA-binding protein smu 88.5 0.63 2.1E-05 50.2 6.9 62 161-227 193-254 (646)
477 4dkx_A RAS-related protein RAB 88.5 0.24 8.4E-06 45.2 3.1 22 177-198 15-36 (216)
478 3llu_A RAS-related GTP-binding 88.5 0.2 7E-06 44.6 2.5 24 175-198 20-43 (196)
479 3zq6_A Putative arsenical pump 88.4 0.7 2.4E-05 45.0 6.5 45 175-221 14-58 (324)
480 2fv8_A H6, RHO-related GTP-bin 88.4 0.26 9E-06 44.3 3.2 24 175-198 25-48 (207)
481 3k53_A Ferrous iron transport 88.3 0.29 9.9E-06 46.4 3.6 24 175-198 3-26 (271)
482 2woj_A ATPase GET3; tail-ancho 88.3 0.8 2.7E-05 45.2 6.9 47 173-221 16-64 (354)
483 2dpy_A FLII, flagellum-specifi 88.2 0.26 9E-06 50.2 3.4 27 174-200 156-182 (438)
484 2atx_A Small GTP binding prote 88.2 0.27 9.3E-06 43.5 3.2 23 176-198 19-41 (194)
485 2q3h_A RAS homolog gene family 88.2 0.27 9.2E-06 43.9 3.1 24 175-198 20-43 (201)
486 3ug7_A Arsenical pump-driving 88.2 0.69 2.4E-05 45.6 6.4 42 173-216 24-65 (349)
487 2o52_A RAS-related protein RAB 88.1 0.26 9E-06 44.1 3.0 25 174-198 24-48 (200)
488 3cph_A RAS-related protein SEC 88.1 0.28 9.7E-06 44.1 3.3 25 175-199 20-44 (213)
489 2j0v_A RAC-like GTP-binding pr 88.1 0.28 9.6E-06 44.2 3.2 25 174-198 8-32 (212)
490 2hup_A RAS-related protein RAB 88.0 0.28 9.7E-06 43.9 3.2 25 175-199 29-53 (201)
491 2gco_A H9, RHO-related GTP-bin 88.0 0.29 9.9E-06 43.8 3.2 25 175-199 25-49 (201)
492 2woo_A ATPase GET3; tail-ancho 87.9 0.67 2.3E-05 45.3 6.1 45 172-218 16-60 (329)
493 2h17_A ADP-ribosylation factor 87.9 0.21 7.2E-06 43.8 2.2 24 175-198 21-44 (181)
494 1u0l_A Probable GTPase ENGC; p 87.9 0.27 9.3E-06 47.4 3.1 35 163-200 160-194 (301)
495 2il1_A RAB12; G-protein, GDP, 87.9 0.27 9.4E-06 43.6 3.0 23 176-198 27-49 (192)
496 2j1l_A RHO-related GTP-binding 87.9 0.27 9.4E-06 44.5 3.0 25 174-198 33-57 (214)
497 3q3j_B RHO-related GTP-binding 87.8 0.31 1E-05 44.3 3.3 25 175-199 27-51 (214)
498 2fu5_C RAS-related protein RAB 87.8 0.17 5.8E-06 44.4 1.5 24 175-198 8-31 (183)
499 2qag_C Septin-7; cell cycle, c 87.4 0.25 8.4E-06 50.0 2.6 23 177-199 33-55 (418)
500 1yqt_A RNAse L inhibitor; ATP- 87.4 0.3 1E-05 51.3 3.4 20 177-196 49-68 (538)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.4e-51 Score=443.02 Aligned_cols=385 Identities=12% Similarity=0.115 Sum_probs=254.9
Q ss_pred cchHHHHHHHHHHcCC---CCceEEEEEcCCCCcHHHHHHHHHH--HhcccCCCCeEEEEEeCCCc--CHHHHHHHHHHH
Q 043056 157 ESRMFTLRNILSALED---PDVNMLGIYGMGGIGKTMLAEEVAR--KVKSDKLFDQVVFVEVSQNQ--DIRKLQGEIADK 229 (559)
Q Consensus 157 ~gR~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~--~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~ 229 (559)
+||+.++++|.++|.. +..++|+|+||||+||||||+++|+ +.+.+.+|++++||++++.+ +...++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 4999999999999863 3679999999999999999999998 56677889999999999985 899999999999
Q ss_pred hCCCCc--CC------ChhhhHHHHHHHHHcCCeEEEEEeCCCcccccchhcCCCCCCCCCcEEEEEecCcchhccCCCC
Q 043056 230 LGLKFH--EE------SESGRANSLFKRIKAEKKILIILDNIWENLDLRVVGIPHGDGHKDCKVLLTARSLDVLSGKMDS 301 (559)
Q Consensus 230 l~~~~~--~~------~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~va~~~~~~ 301 (559)
++.... .. +.......+.+.+...|||||||||||+..++ .+. ..+||+||||||+..++......
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGGCCSC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHHcCCC
Confidence 986522 11 11223456666666324999999999998754 111 12799999999999987532224
Q ss_pred CCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHhcCChHHHHHHHHHhcCCCCCCcc
Q 043056 302 RPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTIARALRNKRLFEWKDALEQLRRPSSTNFK 381 (559)
Q Consensus 302 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~~l~~~~~~~~~ 381 (559)
...|+|++|+.++||+||.+.++....++.+.+++++|+++|+|+||||+++|+.|+.++ ++|...+....+...
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~---- 359 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRG---- 359 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHC----
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhccc----
Confidence 468999999999999999999886554578888999999999999999999999998764 334333332111000
Q ss_pred chHHHHHHHHHHhhcCCCChhHHHHHH-----------HhccCC-CCChHHHHHHHhhc--ccccccchHHHHHHHHHHH
Q 043056 382 DIQQTAYKAIELSYNKLEGEELKNIFL-----------LIGYTA-IASIDALLMCGMGL--GLFQGVNKMEVARARVRTL 447 (559)
Q Consensus 382 ~~~~~i~~~l~~sy~~L~~~~lk~cfl-----------~~s~fp-~i~~~~Li~~w~ae--g~i~~~~~~~~~~~~~~~~ 447 (559)
..++..++.+||++||++ +|.||+ |||+|| +++.. +++|+|+ ||+.+.......++..+ +
T Consensus 360 --~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~-~ 433 (549)
T 2a5y_B 360 --LVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVAD-R 433 (549)
T ss_dssp --SSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHH-H
T ss_pred --HHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHH-H
Confidence 233577889999999998 999999 999999 66666 8999999 99975321111223333 8
Q ss_pred HHHHHHccccccccCCCcceEEecHHHHHHHHHHhcccccceEeccccccCcccccccccccCceEEEecCCCCccCCCC
Q 043056 448 VHKLKASCMLLDHISKNEEFFSMHDVVRDIAISIASREQNALTATNEQVGGFREWSDKSAVKHYTSIVLHDIKANVLPEV 527 (559)
Q Consensus 448 i~~L~~~sll~~~~~~~~~~~~mHdlv~d~a~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~ 527 (559)
+++|+++||++....+...+|+|||+||+||++++.+++..-... ....++..+.........||++.+...+......
T Consensus 434 l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~~~~~~-~~~~rl~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 512 (549)
T 2a5y_B 434 LKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTIANGIS-ILEQRLLEIGNNNVSVPERHIPSHFQKFRRSSAS 512 (549)
T ss_dssp HHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHHHHHHT-TSTTTSSCC-------------------------
T ss_pred HHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCccchhhhhhhhhhcccchh
Confidence 999999999997755444789999999999999988765311000 0001233344444556678887766554332222
Q ss_pred cccCCc-chhhhhcccCCCCccCChHHHhcccC
Q 043056 528 VECPQL-KLLFIHADKESSSLTIPNNFFKRMIQ 559 (559)
Q Consensus 528 ~~~~~L-r~L~l~~~~~~~~~~ip~~~f~~m~~ 559 (559)
..+|.+ ....+-...-..+.++|..||++|+|
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (549)
T 2a5y_B 513 EMYPKTTEETVIRPEDFPKFMQLHQKFYDSLKN 545 (549)
T ss_dssp --------CCSCCCTTSTTCSCTTHHHHTCC--
T ss_pred ccCccccccceeeccchHHHHHHHHHHHHHHHH
Confidence 223433 22112222223567889999999986
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.1e-40 Score=387.12 Aligned_cols=313 Identities=19% Similarity=0.273 Sum_probs=246.0
Q ss_pred cCCCCCccchHHHHHHHHHHcC--CCCceEEEEEcCCCCcHHHHHHHHHHHhcc-cC-CCCeEEEEEeCCCcC--HHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKVKS-DK-LFDQVVFVEVSQNQD--IRKLQ 223 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~-~f~~~~wv~~s~~~~--~~~~~ 223 (559)
|.....|+||++++++|.++|. +++.++|+|+||||+||||||+++|++.+. .. .|+.++|+++++..+ ....+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 4556679999999999999985 467899999999999999999999988543 23 457899999998543 44556
Q ss_pred HHHHHHhCCCCcC-----CChhhhHHHHHHHHHc-CCeEEEEEeCCCcccccchhcCCCCCCCCCcEEEEEecCcchhcc
Q 043056 224 GEIADKLGLKFHE-----ESESGRANSLFKRIKA-EKKILIILDNIWENLDLRVVGIPHGDGHKDCKVLLTARSLDVLSG 297 (559)
Q Consensus 224 ~~i~~~l~~~~~~-----~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~va~~ 297 (559)
..++..+...... .........+...+.. +||+||||||||+...|..+ .+||+||||||++.++..
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~ 272 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDS 272 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTT
T ss_pred HHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHh
Confidence 7777777654321 1222333344444432 34999999999998877754 568999999999998744
Q ss_pred CCCCCCeeecCC-CCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHhcCChHHHHHHHHHhcCCC
Q 043056 298 KMDSRPNFSIGV-LNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTIARALRNKRLFEWKDALEQLRRPS 376 (559)
Q Consensus 298 ~~~~~~~~~l~~-L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~~l~~~~ 376 (559)
.......+.+.+ |+.++|++||...++.. .+.+.+.+++|+++|+|+||||+++|++|+.++ ..|..+++.+....
T Consensus 273 ~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~ 349 (1249)
T 3sfz_A 273 VMGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQ 349 (1249)
T ss_dssp CCSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCC
T ss_pred hcCCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhh
Confidence 466778999996 99999999999998643 344556799999999999999999999999775 47999998886554
Q ss_pred CCCc----cchHHHHHHHHHHhhcCCCChhHHHHHHHhccCC---CCChHHHHHHHhhcccccccchHHHHHHHHHHHHH
Q 043056 377 STNF----KDIQQTAYKAIELSYNKLEGEELKNIFLLIGYTA---IASIDALLMCGMGLGLFQGVNKMEVARARVRTLVH 449 (559)
Q Consensus 377 ~~~~----~~~~~~i~~~l~~sy~~L~~~~lk~cfl~~s~fp---~i~~~~Li~~w~aeg~i~~~~~~~~~~~~~~~~i~ 449 (559)
.... ....+.+..+|.+||+.||++ .|.||+|||+|| .|+.+.++.+|.+++ ..+.++++
T Consensus 350 ~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~------------~~~~~~l~ 416 (1249)
T 3sfz_A 350 FKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET------------EEVEDILQ 416 (1249)
T ss_dssp CCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH------------HHHHHHHH
T ss_pred hhhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCCH------------HHHHHHHH
Confidence 3221 122468999999999999998 899999999999 678899999997652 34467789
Q ss_pred HHHHccccccccCCCcceEEecHHHHHHHHHHhccc
Q 043056 450 KLKASCMLLDHISKNEEFFSMHDVVRDIAISIASRE 485 (559)
Q Consensus 450 ~L~~~sll~~~~~~~~~~~~mHdlv~d~a~~~~~~e 485 (559)
+|+++||++....+...+|+||++||+|+++.+.++
T Consensus 417 ~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 417 EFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 999999998776554457999999999999998765
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=9.5e-39 Score=348.38 Aligned_cols=279 Identities=20% Similarity=0.205 Sum_probs=217.6
Q ss_pred ccchHHHHHHHHHHcCC-CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCe-EEEEEeCCCcCHHHHHHHHHHHhCC-
Q 043056 156 FESRMFTLRNILSALED-PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQ-VVFVEVSQNQDIRKLQGEIADKLGL- 232 (559)
Q Consensus 156 ~~gR~~~~~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~~~l~~- 232 (559)
.+||+.++++|.++|.. +..++|+|+||||+||||||+++|++.+...+|+. ++|+++++.++...++..|+..++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 48999999999999873 55789999999999999999999998766667986 9999999999988888888775432
Q ss_pred --CCcCC-----Ch----hhhHHHHHHHH--HcCCeEEEEEeCCCcccccchhcCCCCCCCCCcEEEEEecCcchhccCC
Q 043056 233 --KFHEE-----SE----SGRANSLFKRI--KAEKKILIILDNIWENLDLRVVGIPHGDGHKDCKVLLTARSLDVLSGKM 299 (559)
Q Consensus 233 --~~~~~-----~~----~~~~~~l~~~l--~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~va~~~~ 299 (559)
..... .. ......+.+.+ ..+||+||||||||+...|+.+. +||+||||||+..++.. +
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~-l 281 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDF-L 281 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHH-H
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHh-c
Confidence 11100 11 11233344433 14789999999999988887652 68999999999988631 1
Q ss_pred CCCCeeecC------CCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHhcC--ChHHHHHHHHH
Q 043056 300 DSRPNFSIG------VLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTIARALRNK--RLFEWKDALEQ 371 (559)
Q Consensus 300 ~~~~~~~l~------~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~--~~~~w~~~l~~ 371 (559)
.....|.++ +|+.+|||+||++.++.. ..++..+| |+|+||||+++|+.|+.+ +..+|...
T Consensus 282 ~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~--- 350 (1221)
T 1vt4_I 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV--- 350 (1221)
T ss_dssp HHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC---
T ss_pred CCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC---
Confidence 222356666 999999999999996532 12334444 999999999999999977 77888653
Q ss_pred hcCCCCCCccchHHHHHHHHHHhhcCCCChhH-HHHHHHhccCC---CCChHHHHHHHhhcccccccchHHHHHHHHHHH
Q 043056 372 LRRPSSTNFKDIQQTAYKAIELSYNKLEGEEL-KNIFLLIGYTA---IASIDALLMCGMGLGLFQGVNKMEVARARVRTL 447 (559)
Q Consensus 372 l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~l-k~cfl~~s~fp---~i~~~~Li~~w~aeg~i~~~~~~~~~~~~~~~~ 447 (559)
+ ...+..+|.+||+.||++ . |.||++||+|| .|+.+.++.+|+++|. ..+..+
T Consensus 351 -------~----~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-----------edAe~~ 407 (1221)
T 1vt4_I 351 -------N----CDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-----------SDVMVV 407 (1221)
T ss_dssp -------S----CHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-----------HHHHHH
T ss_pred -------C----hhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-----------HHHHHH
Confidence 1 467899999999999998 8 99999999999 5677889999998871 135568
Q ss_pred HHHHHHccccccccCCCcceEEecHHHHHHH
Q 043056 448 VHKLKASCMLLDHISKNEEFFSMHDVVRDIA 478 (559)
Q Consensus 448 i~~L~~~sll~~~~~~~~~~~~mHdlv~d~a 478 (559)
+++|+++|||+..... .+|+||||+++++
T Consensus 408 L~eLvdRSLLq~d~~~--~rYrMHDLllELr 436 (1221)
T 1vt4_I 408 VNKLHKYSLVEKQPKE--STISIPSIYLELK 436 (1221)
T ss_dssp HHHHHTSSSSSBCSSS--SEEBCCCHHHHHH
T ss_pred HHHHHhhCCEEEeCCC--CEEEehHHHHHHh
Confidence 9999999999875333 6899999999965
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=2.3e-36 Score=328.99 Aligned_cols=308 Identities=20% Similarity=0.302 Sum_probs=230.0
Q ss_pred cCCCCCccchHHHHHHHHHHcC--CCCceEEEEEcCCCCcHHHHHHHHHHHhcc-cCCC-CeEEEEEeCCCcCHHHHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKVKS-DKLF-DQVVFVEVSQNQDIRKLQGE 225 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~s~~~~~~~~~~~ 225 (559)
|.....|+||+.+++.|.++|. .++.++|+|+||||+||||||.+++++... ..+| +.++|++++.. +...++..
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHH
Confidence 3445679999999999999997 356789999999999999999999987643 4458 58999999875 33333333
Q ss_pred ---HHHHhCCCC-----cCCChhhhHHHHHHHHHc-CCeEEEEEeCCCcccccchhcCCCCCCCCCcEEEEEecCcchhc
Q 043056 226 ---IADKLGLKF-----HEESESGRANSLFKRIKA-EKKILIILDNIWENLDLRVVGIPHGDGHKDCKVLLTARSLDVLS 296 (559)
Q Consensus 226 ---i~~~l~~~~-----~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~va~ 296 (559)
++..++... ...........+...+.. .+++||||||+|+...+..+ .+|++||||||+..++.
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGT
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHH
Confidence 344554211 111222334455555543 37899999999987665533 46899999999998764
Q ss_pred cCCCCCCeeec---CCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHhcCChHHHHHHHHHhc
Q 043056 297 GKMDSRPNFSI---GVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTIARALRNKRLFEWKDALEQLR 373 (559)
Q Consensus 297 ~~~~~~~~~~l---~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~~l~ 373 (559)
... ...+.+ ++|+.+++++||...++.. .....+.+.+|+++|+|+||||..+|+.++.+. ..|..+++.+.
T Consensus 272 ~~~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~ 346 (591)
T 1z6t_A 272 SVM--GPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQ 346 (591)
T ss_dssp TCC--SCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHH
T ss_pred hcC--CCceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 222 334444 6899999999999998742 223345789999999999999999999999764 37988888876
Q ss_pred CCCCCCc----cchHHHHHHHHHHhhcCCCChhHHHHHHHhccCC---CCChHHHHHHHhhcccccccchHHHHHHHHHH
Q 043056 374 RPSSTNF----KDIQQTAYKAIELSYNKLEGEELKNIFLLIGYTA---IASIDALLMCGMGLGLFQGVNKMEVARARVRT 446 (559)
Q Consensus 374 ~~~~~~~----~~~~~~i~~~l~~sy~~L~~~~lk~cfl~~s~fp---~i~~~~Li~~w~aeg~i~~~~~~~~~~~~~~~ 446 (559)
....... ......+..++..||+.||++ .|.||++||+|| .|+.+.+..+|.+++ ..+..
T Consensus 347 ~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~~------------~~~~~ 413 (591)
T 1z6t_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDMET------------EEVED 413 (591)
T ss_dssp SCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCCH------------HHHHH
T ss_pred HhHHHHhhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccCH------------HHHHH
Confidence 5432211 112468999999999999998 899999999998 477788999996541 23456
Q ss_pred HHHHHHHccccccccCCCcceEEecHHHHHHHHHHhc
Q 043056 447 LVHKLKASCMLLDHISKNEEFFSMHDVVRDIAISIAS 483 (559)
Q Consensus 447 ~i~~L~~~sll~~~~~~~~~~~~mHdlv~d~a~~~~~ 483 (559)
+++.|+++|||+....+...+|+||++||+|++....
T Consensus 414 ~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 414 ILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 7899999999986554444689999999999998843
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.75 E-value=1.6e-16 Score=160.65 Aligned_cols=292 Identities=12% Similarity=0.079 Sum_probs=174.1
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCc------CHHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQ------DIRKLQ 223 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~------~~~~~~ 223 (559)
+.....|+||+.+++.|.+++..+ +++.|+|++|+|||||++++.+... .+|+++.... +...++
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 78 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNERP-------GILIDCRELYAERGHITREELI 78 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHSS-------EEEEEHHHHHHTTTCBCHHHHH
T ss_pred CCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHcC-------cEEEEeecccccccCCCHHHHH
Confidence 444567999999999999988643 7999999999999999999998641 6788775432 566677
Q ss_pred HHHHHHhCCC---------------CcC----CChhhhHHHHHHHHHcCCeEEEEEeCCCcccc---------cchhcCC
Q 043056 224 GEIADKLGLK---------------FHE----ESESGRANSLFKRIKAEKKILIILDNIWENLD---------LRVVGIP 275 (559)
Q Consensus 224 ~~i~~~l~~~---------------~~~----~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~---------~~~l~~~ 275 (559)
..+.+.+... ... .........+.+.....++++|||||++.... +..+. .
T Consensus 79 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~-~ 157 (350)
T 2qen_A 79 KELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFA-Y 157 (350)
T ss_dssp HHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHH-H
T ss_pred HHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHH-H
Confidence 7776655420 000 11111222222222212389999999976443 12221 1
Q ss_pred CCCCCCCcEEEEEecCcchhc----------cCCCC-CCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhC
Q 043056 276 HGDGHKDCKVLLTARSLDVLS----------GKMDS-RPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECA 344 (559)
Q Consensus 276 ~~~~~~gs~IivTTR~~~va~----------~~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~ 344 (559)
+....++.++|+|++...... ...+. ...+.+.||+.+|+.+++...+....... -.+.+..|++.|+
T Consensus 158 ~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~-~~~~~~~i~~~tg 236 (350)
T 2qen_A 158 AYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV-PENEIEEAVELLD 236 (350)
T ss_dssp HHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHHT
T ss_pred HHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhC
Confidence 111124778999988653211 01112 24799999999999999988653211111 1456789999999
Q ss_pred CChHHHHHHHHHHhc-CChHHHHHHHHHhcCCCCCCccchHHHHHHHHHHhhcCC---CChhHHHHHHHhccCCCCChHH
Q 043056 345 GLPVSVVTIARALRN-KRLFEWKDALEQLRRPSSTNFKDIQQTAYKAIELSYNKL---EGEELKNIFLLIGYTAIASIDA 420 (559)
Q Consensus 345 GlPLai~~~~~~L~~-~~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~lk~cfl~~s~fp~i~~~~ 420 (559)
|+|+++..++..+.. .+...+. ..+ .+.+...+.-.+..+ ++. .+.++..+|. ...+...
T Consensus 237 G~P~~l~~~~~~~~~~~~~~~~~---~~~-----------~~~~~~~~~~~l~~l~~~~~~-~~~~l~~la~-g~~~~~~ 300 (350)
T 2qen_A 237 GIPGWLVVFGVEYLRNGDFGRAM---KRT-----------LEVAKGLIMGELEELRRRSPR-YVDILRAIAL-GYNRWSL 300 (350)
T ss_dssp TCHHHHHHHHHHHHHHCCHHHHH---HHH-----------HHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHT-TCCSHHH
T ss_pred CCHHHHHHHHHHHhccccHhHHH---HHH-----------HHHHHHHHHHHHHHHHhCChh-HHHHHHHHHh-CCCCHHH
Confidence 999999999876542 2322221 110 111111111112222 565 7888888887 3344455
Q ss_pred HHHHHhhcccccccchHHHHHHHHHHHHHHHHHccccccccCCCcceEE-ecHHHHHHHH
Q 043056 421 LLMCGMGLGLFQGVNKMEVARARVRTLVHKLKASCMLLDHISKNEEFFS-MHDVVRDIAI 479 (559)
Q Consensus 421 Li~~w~aeg~i~~~~~~~~~~~~~~~~i~~L~~~sll~~~~~~~~~~~~-mHdlv~d~a~ 479 (559)
+........ .+. ....+..+++.|.+.+++.... +.|+ -|++++++.+
T Consensus 301 l~~~~~~~~--~~~-----~~~~~~~~l~~L~~~gli~~~~----~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 301 IRDYLAVKG--TKI-----PEPRLYALLENLKKMNWIVEED----NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHTT--CCC-----CHHHHHHHHHHHHHTTSEEEET----TEEEESSHHHHHHHT
T ss_pred HHHHHHHHh--CCC-----CHHHHHHHHHHHHhCCCEEecC----CEEEEecHHHHHHHc
Confidence 544321110 000 1223456788899999997552 3354 4899998764
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.72 E-value=5.1e-16 Score=157.25 Aligned_cols=291 Identities=12% Similarity=0.149 Sum_probs=172.7
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCC-----cCHHHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQN-----QDIRKLQG 224 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-----~~~~~~~~ 224 (559)
......|+||+++++.|.+ +.. +++.|+|++|+|||||++.+.+.... ..+|+++... .+...++.
T Consensus 9 ~~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 9 KDNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp CCSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHHHH
T ss_pred CCCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHHHH
Confidence 3345669999999999999 765 69999999999999999999987642 2578887643 34445555
Q ss_pred HHHHHhC------------------CCCcCC--C------hhhhHHHHHHHHHc-C-CeEEEEEeCCCccc-----ccch
Q 043056 225 EIADKLG------------------LKFHEE--S------ESGRANSLFKRIKA-E-KKILIILDNIWENL-----DLRV 271 (559)
Q Consensus 225 ~i~~~l~------------------~~~~~~--~------~~~~~~~l~~~l~~-~-kr~LlVlDdv~~~~-----~~~~ 271 (559)
.+.+.+. ...... . .......+.+.+.. . ++++|||||++... .+..
T Consensus 80 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~ 159 (357)
T 2fna_A 80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLP 159 (357)
T ss_dssp HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHH
T ss_pred HHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHH
Confidence 4444331 000000 0 11233445555542 1 48999999997532 2322
Q ss_pred hcCCCCCCCCCcEEEEEecCcchhc----------cCCCC-CCeeecCCCCHHHHHHHHHHHhCC-CCCCcchHHHHHHH
Q 043056 272 VGIPHGDGHKDCKVLLTARSLDVLS----------GKMDS-RPNFSIGVLNEEEAWNLFKKMAGD-YIEGSEFQSVARDV 339 (559)
Q Consensus 272 l~~~~~~~~~gs~IivTTR~~~va~----------~~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~-~~~~~~~~~~~~~I 339 (559)
+...+.....+..+|+|++...... ...+. ...+.+.+|+.+++.+++...+.. ...... ...|
T Consensus 160 ~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~~i 235 (357)
T 2fna_A 160 ALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YEVV 235 (357)
T ss_dssp HHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHHH
T ss_pred HHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HHHH
Confidence 2222212224678999998754211 01112 258999999999999999886531 111122 1789
Q ss_pred HHHhCCChHHHHHHHHHHhc-CChHHHHH-HHHHhcCCCCCCccchHHHHHHHHH-Hhh--cCCCChhHHHHHHHhccCC
Q 043056 340 AKECAGLPVSVVTIARALRN-KRLFEWKD-ALEQLRRPSSTNFKDIQQTAYKAIE-LSY--NKLEGEELKNIFLLIGYTA 414 (559)
Q Consensus 340 ~~~c~GlPLai~~~~~~L~~-~~~~~w~~-~l~~l~~~~~~~~~~~~~~i~~~l~-~sy--~~L~~~~lk~cfl~~s~fp 414 (559)
++.|+|+|+++..++..+.. .+...|.. +.+. ....+..-+. +.+ ..||+. .+..+..+|.-+
T Consensus 236 ~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~l~~~-~~~~l~~la~g~ 303 (357)
T 2fna_A 236 YEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEY-----------AKKLILKEFENFLHGREIARKR-YLNIMRTLSKCG 303 (357)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHH-----------HHHHHHHHHHHHHTTCGGGHHH-HHHHHHHHTTCB
T ss_pred HHHhCCCHHHHHHHHHHHccccchHHHHHHHHHH-----------HHHHHHHHHHHHhhccccccHH-HHHHHHHHHcCC
Confidence 99999999999999887653 23333321 1111 0111111121 111 167776 789998888733
Q ss_pred CCChHHHHHHHh-hcccccccchHHHHHHHHHHHHHHHHHccccccccCCCcceEE-ecHHHHHHH
Q 043056 415 IASIDALLMCGM-GLGLFQGVNKMEVARARVRTLVHKLKASCMLLDHISKNEEFFS-MHDVVRDIA 478 (559)
Q Consensus 415 ~i~~~~Li~~w~-aeg~i~~~~~~~~~~~~~~~~i~~L~~~sll~~~~~~~~~~~~-mHdlv~d~a 478 (559)
+...+....- ..|. +. ....+..+++.|.+.++|.... +.|+ -|++++++.
T Consensus 304 --~~~~l~~~~~~~~g~--~~-----~~~~~~~~L~~L~~~gli~~~~----~~y~f~~~~~~~~l 356 (357)
T 2fna_A 304 --KWSDVKRALELEEGI--EI-----SDSEIYNYLTQLTKHSWIIKEG----EKYCPSEPLISLAF 356 (357)
T ss_dssp --CHHHHHHHHHHHHCS--CC-----CHHHHHHHHHHHHHTTSEEESS----SCEEESSHHHHHHT
T ss_pred --CHHHHHHHHHHhcCC--CC-----CHHHHHHHHHHHHhCCCEEecC----CEEEecCHHHHHhh
Confidence 5444432210 1110 00 1223456788899999997543 3355 589999874
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.66 E-value=7.4e-15 Score=151.91 Aligned_cols=304 Identities=13% Similarity=0.072 Sum_probs=178.4
Q ss_pred CCccchHHHHHHHHHHc-C----C--CCceEEEE--EcCCCCcHHHHHHHHHHHhccc---CCCC-eEEEEEeCCCcCHH
Q 043056 154 LPFESRMFTLRNILSAL-E----D--PDVNMLGI--YGMGGIGKTMLAEEVARKVKSD---KLFD-QVVFVEVSQNQDIR 220 (559)
Q Consensus 154 ~~~~gR~~~~~~l~~~L-~----~--~~~~vi~I--~G~~GiGKTtLa~~v~~~~~~~---~~f~-~~~wv~~s~~~~~~ 220 (559)
..++||+.+++.|.+++ . . .....+.| +|++|+|||||++.+++..... ..+. .++|+++....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 56999999999998888 3 2 34567777 9999999999999999876532 1122 36788877778889
Q ss_pred HHHHHHHHHhCCCCcC--CChhhhHHHHHHHHH-cCCeEEEEEeCCCccc--------ccchhcCCCCC-C--C--CCcE
Q 043056 221 KLQGEIADKLGLKFHE--ESESGRANSLFKRIK-AEKKILIILDNIWENL--------DLRVVGIPHGD-G--H--KDCK 284 (559)
Q Consensus 221 ~~~~~i~~~l~~~~~~--~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~--------~~~~l~~~~~~-~--~--~gs~ 284 (559)
.++..++..++..... .+.......+...+. .+++++|||||++... .+..+...+.. . + ....
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 9999999999765332 122233444554443 3679999999997642 12222222111 1 2 3456
Q ss_pred EEEEecCcchhc--------cCCCCCCeeecCCCCHHHHHHHHHHHhCCC-CCCcchHHHHHHHHHHhC------CChHH
Q 043056 285 VLLTARSLDVLS--------GKMDSRPNFSIGVLNEEEAWNLFKKMAGDY-IEGSEFQSVARDVAKECA------GLPVS 349 (559)
Q Consensus 285 IivTTR~~~va~--------~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~-~~~~~~~~~~~~I~~~c~------GlPLa 349 (559)
||+||+...+.. ........+.+.+|+.++++++|...+... ....--.+....|++.|+ |+|..
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~ 261 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARR 261 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHH
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHH
Confidence 888887544210 001112239999999999999998664310 011112457888999999 99976
Q ss_pred HHHHHHHHh------cC---ChHHHHHHHHHhcCCCCCCccchHHHHHHHHHHhhcCCCChhHHHHHHHhccC---C--C
Q 043056 350 VVTIARALR------NK---RLFEWKDALEQLRRPSSTNFKDIQQTAYKAIELSYNKLEGEELKNIFLLIGYT---A--I 415 (559)
Q Consensus 350 i~~~~~~L~------~~---~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~lk~cfl~~s~f---p--~ 415 (559)
+..+..... +. +...+..+...... ...+.-++..||++ .+.++..++.+ . .
T Consensus 262 ~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-------------~~~~~~~l~~l~~~-~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 262 AIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-------------ASIQTHELEALSIH-ELIILRLIAEATLGGMEW 327 (412)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------------------CCSSSSSCHH-HHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-------------cchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCC
Confidence 655543221 11 23333333332110 12344567889987 78888888864 2 4
Q ss_pred CChHHHHHHHhhc--ccccccchHHHHHHHHHHHHHHHHHccccccccC--CCcceEEecHHH
Q 043056 416 ASIDALLMCGMGL--GLFQGVNKMEVARARVRTLVHKLKASCMLLDHIS--KNEEFFSMHDVV 474 (559)
Q Consensus 416 i~~~~Li~~w~ae--g~i~~~~~~~~~~~~~~~~i~~L~~~sll~~~~~--~~~~~~~mHdlv 474 (559)
++...+...+... ..... .. .....+..+++.|.+.+||..... +..+.|++|.+.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 328 INAGLLRQRYEDASLTMYNV-KP--RGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp BCHHHHHHHHHHHHHHHSCC-CC--CCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred ccHHHHHHHHHHHHHhhcCC-CC--CCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 5555554433210 00100 00 012345567889999999975432 222445555443
No 8
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.52 E-value=3.2e-14 Score=117.82 Aligned_cols=78 Identities=12% Similarity=0.153 Sum_probs=65.3
Q ss_pred HHHHhhhhHHHHHhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHhh
Q 043056 10 VEVVKCLAPPAYRQISYLRESKCTGNVQNLKAEVENLKSERVSTQHKVDEAKRKG-EEIEENVENWLARANNVIVEADKF 88 (559)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~-~~~~~~v~~Wl~~v~~~ayd~ed~ 88 (559)
+.++++|.+.+.+++..+. ++++++++|+++|++|+++|.+|+++. ...+++++.|+++||+++||+|||
T Consensus 4 ~~ll~KL~~ll~~E~~l~~---------gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~ 74 (115)
T 3qfl_A 4 SNLIPKLGELLTEEFKLHK---------GVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDV 74 (115)
T ss_dssp CSHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh---------chHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666 999999999999999999999999873 346899999999999999999999
Q ss_pred hhHHHhhc
Q 043056 89 TDDEATAN 96 (559)
Q Consensus 89 ld~~~~~~ 96 (559)
||+|.+..
T Consensus 75 iD~f~~~~ 82 (115)
T 3qfl_A 75 VDKFLVQV 82 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99997543
No 9
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.50 E-value=2e-12 Score=132.31 Aligned_cols=283 Identities=13% Similarity=0.081 Sum_probs=171.5
Q ss_pred CCccchHHHHHHHHHHcC----CCCceEEEEEcCCCCcHHHHHHHHHHHhccc-----CC-CCeEEEEEeCCCc-CHHHH
Q 043056 154 LPFESRMFTLRNILSALE----DPDVNMLGIYGMGGIGKTMLAEEVARKVKSD-----KL-FDQVVFVEVSQNQ-DIRKL 222 (559)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-----~~-f~~~~wv~~s~~~-~~~~~ 222 (559)
..++||+++++.+..++. ....+.+.|+|++|+||||||+.+++..... .. ....+|++++... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 569999999999887664 4456789999999999999999999876332 11 2357888887766 88888
Q ss_pred HHHHHHHh-CCCCc--CCChhhhHHHHHHHHHcCCeEEEEEeCCCcccc--cchh-cCCCCCCCCCcEEEEEecCcchh-
Q 043056 223 QGEIADKL-GLKFH--EESESGRANSLFKRIKAEKKILIILDNIWENLD--LRVV-GIPHGDGHKDCKVLLTARSLDVL- 295 (559)
Q Consensus 223 ~~~i~~~l-~~~~~--~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~--~~~l-~~~~~~~~~gs~IivTTR~~~va- 295 (559)
+..++..+ +.... ..........+...+.. ++.+|||||++.... +... ...+.....+..||+||+.....
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-IRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-SCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-CCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHh
Confidence 89988887 32221 12223345556666653 344999999976432 1111 11111111677889998875321
Q ss_pred ---ccC-CCCCCeeecCCCCHHHHHHHHHHHhCC-CCCCcchHHHHHHHHHHhC---CChH-HHHHHHHHHh---c--C-
Q 043056 296 ---SGK-MDSRPNFSIGVLNEEEAWNLFKKMAGD-YIEGSEFQSVARDVAKECA---GLPV-SVVTIARALR---N--K- 360 (559)
Q Consensus 296 ---~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~-~~~~~~~~~~~~~I~~~c~---GlPL-ai~~~~~~L~---~--~- 360 (559)
... ......+.+++++.++..++|...+.. .....--.+..+.+++.|+ |.|. ++..+-.+.. + .
T Consensus 179 ~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i 258 (384)
T 2qby_B 179 YMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGII 258 (384)
T ss_dssp TSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCC
T ss_pred hhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCcc
Confidence 000 011238999999999999999987531 1011111345777888888 9886 4444433331 1 2
Q ss_pred ChHHHHHHHHHhcCCCCCCccchHHHHHHHHHHhhcCCCChhHHHHHHHhccCCCCChHHHH----HHHhhcccccccch
Q 043056 361 RLFEWKDALEQLRRPSSTNFKDIQQTAYKAIELSYNKLEGEELKNIFLLIGYTAIASIDALL----MCGMGLGLFQGVNK 436 (559)
Q Consensus 361 ~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~lk~cfl~~s~fp~i~~~~Li----~~w~aeg~i~~~~~ 436 (559)
+.+.+..+++... ...+.-++..|+++ .+..+..++. . .....+. ...-..| +.+.
T Consensus 259 ~~~~v~~~~~~~~--------------~~~~~~~~~~l~~~-~~~~l~al~~-~-~~~~~~~~~~~~~~~~~g-~~~~-- 318 (384)
T 2qby_B 259 RKEHVDKAIVDYE--------------QERLIEAVKALPFH-YKLALRSLIE-S-EDVMSAHKMYTDLCNKFK-QKPL-- 318 (384)
T ss_dssp CHHHHHHHHHHHH--------------HHHHHHHHHSSCHH-HHHHHHHHHT-C-CBHHHHHHHHHHHHHHTT-CCCC--
T ss_pred CHHHHHHHHHHHh--------------cchHHHHHHcCCHH-HHHHHHHHHH-h-cccChHHHHHHHHHHHcC-CCCC--
Confidence 6666666665421 23456677889876 5666655554 1 1101111 1111112 1111
Q ss_pred HHHHHHHHHHHHHHHHHccccccc
Q 043056 437 MEVARARVRTLVHKLKASCMLLDH 460 (559)
Q Consensus 437 ~~~~~~~~~~~i~~L~~~sll~~~ 460 (559)
....+.++++.|...|++...
T Consensus 319 ---~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 319 ---SYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp ---CHHHHHHHHHHHHHTTSEEEE
T ss_pred ---CHHHHHHHHHHHHhCCCEEEE
Confidence 224566788999999999754
No 10
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.47 E-value=5e-12 Score=129.15 Aligned_cols=286 Identities=18% Similarity=0.169 Sum_probs=170.6
Q ss_pred CCccchHHHHHHHHHHcC----CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCC-CCeEEEEEeCCCcCHHHHHHHHHH
Q 043056 154 LPFESRMFTLRNILSALE----DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKL-FDQVVFVEVSQNQDIRKLQGEIAD 228 (559)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-f~~~~wv~~s~~~~~~~~~~~i~~ 228 (559)
..++||+.+++.+.+++. ......+.|+|++|+|||||++.+++....... -...+|+++....+...++..++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 569999999999999886 445678999999999999999999987654311 225778887777777888888888
Q ss_pred HhCCCCcCC--ChhhhHHHHHHHHHc-CCeEEEEEeCCCccc------ccchhcCCCCC-CCCCcEEEEEecCcchhccC
Q 043056 229 KLGLKFHEE--SESGRANSLFKRIKA-EKKILIILDNIWENL------DLRVVGIPHGD-GHKDCKVLLTARSLDVLSGK 298 (559)
Q Consensus 229 ~l~~~~~~~--~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~------~~~~l~~~~~~-~~~gs~IivTTR~~~va~~~ 298 (559)
.++...... +.......+.+.+.. +++.+||||+++... .+..+...+.. ...+..+|+||+........
T Consensus 100 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~ 179 (386)
T 2qby_A 100 SLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLL 179 (386)
T ss_dssp TTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGC
T ss_pred HhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhh
Confidence 776543221 223334455555543 458999999997532 12222211111 23356678888765432111
Q ss_pred C------CCCCeeecCCCCHHHHHHHHHHHhCC-CCCCcchHHHHHHHHHHhC---CChHHHHHH-HHHHh-----c--C
Q 043056 299 M------DSRPNFSIGVLNEEEAWNLFKKMAGD-YIEGSEFQSVARDVAKECA---GLPVSVVTI-ARALR-----N--K 360 (559)
Q Consensus 299 ~------~~~~~~~l~~L~~~ea~~Lf~~~~~~-~~~~~~~~~~~~~I~~~c~---GlPLai~~~-~~~L~-----~--~ 360 (559)
. -....+.+++++.++..+++...+.. .....-..+..+.+++.++ |.|..+..+ ..+.. + .
T Consensus 180 ~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~ 259 (386)
T 2qby_A 180 DPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTK 259 (386)
T ss_dssp TTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 0 11248999999999999999986531 0011122456777888887 999744333 22221 1 1
Q ss_pred -ChHHHHHHHHHhcCCCCCCccchHHHHHHHHHHhhcCCCChhHHHHHHHhccC---C--CCChHHHHHHHh--h--ccc
Q 043056 361 -RLFEWKDALEQLRRPSSTNFKDIQQTAYKAIELSYNKLEGEELKNIFLLIGYT---A--IASIDALLMCGM--G--LGL 430 (559)
Q Consensus 361 -~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~lk~cfl~~s~f---p--~i~~~~Li~~w~--a--eg~ 430 (559)
+.+.+..++... ....+.-++..||.. .+..+..++.+ . .+....+.+... + .|
T Consensus 260 i~~~~v~~a~~~~--------------~~~~~~~~~~~l~~~-~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g- 323 (386)
T 2qby_A 260 VKEEYVYMAKEEI--------------ERDRVRDIILTLPFH-SKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG- 323 (386)
T ss_dssp CCHHHHHHHHHHH--------------HHHHHHHHHHTSCHH-HHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-
T ss_pred cCHHHHHHHHHHH--------------hhchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-
Confidence 445555544432 123455667788876 56665555532 1 233433322221 1 12
Q ss_pred ccccchHHHHHHHHHHHHHHHHHccccccc
Q 043056 431 FQGVNKMEVARARVRTLVHKLKASCMLLDH 460 (559)
Q Consensus 431 i~~~~~~~~~~~~~~~~i~~L~~~sll~~~ 460 (559)
+.+. ....+..+++.|...+++...
T Consensus 324 ~~~~-----~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 324 VEAV-----TQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CCCC-----CHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCC-----CHHHHHHHHHHHHhCCCEEEE
Confidence 1110 123456678889999999653
No 11
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.42 E-value=2.8e-11 Score=123.68 Aligned_cols=286 Identities=17% Similarity=0.155 Sum_probs=174.8
Q ss_pred CCccchHHHHHHHHHHcC----CCCceEEEEEcCCCCcHHHHHHHHHHHhccc----CCCCeEEEEEeCCCcCHHHHHHH
Q 043056 154 LPFESRMFTLRNILSALE----DPDVNMLGIYGMGGIGKTMLAEEVARKVKSD----KLFDQVVFVEVSQNQDIRKLQGE 225 (559)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~ 225 (559)
..++||+.+++.+..++. ....+.+.|+|++|+||||||+.+++..... ..-...+|+++....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 569999999999999884 3456789999999999999999999876432 11124678888888889999999
Q ss_pred HHHHhCCCCcCC--ChhhhHHHHHHHHH-cCCeEEEEEeCCCccccc----chh---cCCCCCC--CCCcEEEEEecCcc
Q 043056 226 IADKLGLKFHEE--SESGRANSLFKRIK-AEKKILIILDNIWENLDL----RVV---GIPHGDG--HKDCKVLLTARSLD 293 (559)
Q Consensus 226 i~~~l~~~~~~~--~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~~~----~~l---~~~~~~~--~~gs~IivTTR~~~ 293 (559)
++..++...... +.......+...+. .+++.+|||||++..... +.+ ....... ..+..+|.||+...
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 999997643322 22333455555553 356899999999865321 222 1111111 34567788887653
Q ss_pred hhc----cCC-C-CCCeeecCCCCHHHHHHHHHHHhCC-CCCCcchHHHHHHHHHHhC---CChH-HHHHHHHHHh----
Q 043056 294 VLS----GKM-D-SRPNFSIGVLNEEEAWNLFKKMAGD-YIEGSEFQSVARDVAKECA---GLPV-SVVTIARALR---- 358 (559)
Q Consensus 294 va~----~~~-~-~~~~~~l~~L~~~ea~~Lf~~~~~~-~~~~~~~~~~~~~I~~~c~---GlPL-ai~~~~~~L~---- 358 (559)
... ... . ....+.+++++.++..+++...+.. .....--.+..+.+++.++ |.|- ++..+..+..
T Consensus 179 ~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~ 258 (387)
T 2v1u_A 179 FVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAER 258 (387)
T ss_dssp TSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 210 001 1 1247999999999999999987531 0001111235677888888 9994 4433333322
Q ss_pred -c--C-ChHHHHHHHHHhcCCCCCCccchHHHHHHHHHHhhcCCCChhHHHHHHHhc-cCC---CCChHHHHHHHh----
Q 043056 359 -N--K-RLFEWKDALEQLRRPSSTNFKDIQQTAYKAIELSYNKLEGEELKNIFLLIG-YTA---IASIDALLMCGM---- 426 (559)
Q Consensus 359 -~--~-~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~lk~cfl~~s-~fp---~i~~~~Li~~w~---- 426 (559)
+ . +.+.+..++.... ...+.-++..||.+ .+..+..++ ++. .+....+.+...
T Consensus 259 ~~~~~i~~~~v~~a~~~~~--------------~~~~~~~~~~l~~~-~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (387)
T 2v1u_A 259 RREERVRREHVYSARAEIE--------------RDRVSEVVRTLPLH-AKLVLLSIMMLEDGGRPASTGEIYERYKELTS 323 (387)
T ss_dssp TTCSCBCHHHHHHHHHHHH--------------HHHHHHHHHSSCHH-HHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHh--------------hchHHHHHHcCCHH-HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 1 1 5566666655421 22355677889987 565555555 442 344454433321
Q ss_pred hcccccccchHHHHHHHHHHHHHHHHHccccccc
Q 043056 427 GLGLFQGVNKMEVARARVRTLVHKLKASCMLLDH 460 (559)
Q Consensus 427 aeg~i~~~~~~~~~~~~~~~~i~~L~~~sll~~~ 460 (559)
..| +.+. ....+.++++.|...|++...
T Consensus 324 ~~~-~~~~-----~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 324 TLG-LEHV-----TLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HTT-CCCC-----CHHHHHHHHHHHHHTTSEEEE
T ss_pred hcC-CCCC-----CHHHHHHHHHHHHhCCCeEEE
Confidence 112 1111 234556788889999998754
No 12
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.40 E-value=3.5e-11 Score=123.16 Aligned_cols=309 Identities=13% Similarity=0.113 Sum_probs=183.2
Q ss_pred CCccchHHHHHHHHHHcCC----CCce--EEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHH
Q 043056 154 LPFESRMFTLRNILSALED----PDVN--MLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIA 227 (559)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~~----~~~~--vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 227 (559)
..++||+.+++.+..++.. .... .+.|+|++|+|||||++.+++...... -..++|++++...+...++..++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHH
Confidence 5699999999999888762 3334 899999999999999999998875431 13577888888888889999999
Q ss_pred HHhCCCCcCC--ChhhhHHHHHHHHH-cCCeEEEEEeCCCcc--cccchhcCCCCCCC----CCcEEEEEecCcchhccC
Q 043056 228 DKLGLKFHEE--SESGRANSLFKRIK-AEKKILIILDNIWEN--LDLRVVGIPHGDGH----KDCKVLLTARSLDVLSGK 298 (559)
Q Consensus 228 ~~l~~~~~~~--~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~----~gs~IivTTR~~~va~~~ 298 (559)
..++...... +.......+...+. .+++.+||||+++.. .....+...+.... .+..||+||+........
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 9887643321 22333344444443 256899999999764 22333322221111 366788888765432111
Q ss_pred C------CCCCeeecCCCCHHHHHHHHHHHhCCC-CCCcchHHHHHHHHHHh---------CCChHHHHHHHHH-Hh---
Q 043056 299 M------DSRPNFSIGVLNEEEAWNLFKKMAGDY-IEGSEFQSVARDVAKEC---------AGLPVSVVTIARA-LR--- 358 (559)
Q Consensus 299 ~------~~~~~~~l~~L~~~ea~~Lf~~~~~~~-~~~~~~~~~~~~I~~~c---------~GlPLai~~~~~~-L~--- 358 (559)
. -....+.+.+++.++..+++...+... ....--.+..+.|++.+ +|.|..+..+... ..
T Consensus 176 ~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~ 255 (389)
T 1fnn_A 176 DPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQ 255 (389)
T ss_dssp CHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHH
T ss_pred CHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHH
Confidence 1 012379999999999999998876420 01112246778899999 7987544443332 21
Q ss_pred --cC---ChHHHHHHHHHhcCCCCCCccchHHHHHHHHHHhhcCCCChhHHHHHHHhccCC------CCChHHHHHHHhh
Q 043056 359 --NK---RLFEWKDALEQLRRPSSTNFKDIQQTAYKAIELSYNKLEGEELKNIFLLIGYTA------IASIDALLMCGMG 427 (559)
Q Consensus 359 --~~---~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~lk~cfl~~s~fp------~i~~~~Li~~w~a 427 (559)
+. +.+....+........ +.-.+..||.+ .+.++..++.+. .+....+...+..
T Consensus 256 ~~~~~~i~~~~v~~~~~~~~~~~--------------~~~~l~~l~~~-~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~ 320 (389)
T 1fnn_A 256 QNGRKHIAPEDVRKSSKEVLFGI--------------SEEVLIGLPLH-EKLFLLAIVRSLKISHTPYITFGDAEESYKI 320 (389)
T ss_dssp HTTCSSCCHHHHHHHHHHHSCCC--------------CHHHHHHSCHH-HHHHHHHHHHHHHHHCSSCEEHHHHHHHHHH
T ss_pred HhCCCCcCHHHHHHHHHHHhhhh--------------HHHHHHcCCHH-HHHHHHHHHHHHhhccCCCccHHHHHHHHHH
Confidence 11 3344444444332111 12234567776 576666665432 2344444443321
Q ss_pred ----cccccccchHHHHHHHHHHHHHHHHHccccccccC----CCcc---eEE----ecHHHHHHHHHHhcc
Q 043056 428 ----LGLFQGVNKMEVARARVRTLVHKLKASCMLLDHIS----KNEE---FFS----MHDVVRDIAISIASR 484 (559)
Q Consensus 428 ----eg~i~~~~~~~~~~~~~~~~i~~L~~~sll~~~~~----~~~~---~~~----mHdlv~d~a~~~~~~ 484 (559)
.|. .+. ....+..++++|...+++..... +..+ .++ .|+++..+...+..+
T Consensus 321 ~~~~~~~-~~~-----~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~ 386 (389)
T 1fnn_A 321 VCEEYGE-RPR-----VHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKE 386 (389)
T ss_dssp HHHHTTC-CCC-----CHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHHcCC-CCC-----CHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHH
Confidence 121 110 12446678999999999976433 2112 222 367777666655443
No 13
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.38 E-value=5.8e-12 Score=119.76 Aligned_cols=199 Identities=11% Similarity=0.125 Sum_probs=118.8
Q ss_pred CCCCCccchHHHHHHHHHHcCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 043056 151 KDYLPFESRMFTLRNILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADK 229 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 229 (559)
.....++||+..++.+..++..+. ...+.|+|++|+||||||+.+++.......+.. ........ ...+...
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~ 92 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDN-CREIEQG 92 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHH-HHHHHTT
T ss_pred ccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHH-HHHHhcc
Confidence 345568999999999999887433 458999999999999999999987654321100 00000000 0001000
Q ss_pred hCCC-----CcCCChhhhHHHHHHHHH----cCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEEEecCcchh-cc
Q 043056 230 LGLK-----FHEESESGRANSLFKRIK----AEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLLTARSLDVL-SG 297 (559)
Q Consensus 230 l~~~-----~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~va-~~ 297 (559)
.... ............+.+.+. .+++.+||+||++.. ..+..+...+.....++.+|+||+..... ..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~ 172 (250)
T 1njg_A 93 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 172 (250)
T ss_dssp CCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHH
T ss_pred CCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHH
Confidence 0000 000011111222222221 246799999999653 34454544443344577888888765422 11
Q ss_pred CCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHH
Q 043056 298 KMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTIARAL 357 (559)
Q Consensus 298 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L 357 (559)
.......+.+++++.++..+++...+...... --.+..+.|++.|+|+|..+..+...+
T Consensus 173 l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 173 ILSRCLQFHLKALDVEQIRHQLEHILNEEHIA-HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 12234689999999999999999887522111 124567889999999999888776544
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.36 E-value=8.5e-12 Score=116.92 Aligned_cols=190 Identities=13% Similarity=0.075 Sum_probs=119.8
Q ss_pred CCCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHh
Q 043056 151 KDYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKL 230 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 230 (559)
.....++|++..++.+.+++.....+.+.|+|++|+|||++|+.+++.......-...+.++.+...+...+...+....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFA 93 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHH
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHh
Confidence 34556899999999999998766555699999999999999999998754321112344555554444333322222111
Q ss_pred CCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc--ccchhcCCCCCCCCCcEEEEEecCcchh-ccCCCCCCeeec
Q 043056 231 GLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL--DLRVVGIPHGDGHKDCKVLLTARSLDVL-SGKMDSRPNFSI 307 (559)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~~va-~~~~~~~~~~~l 307 (559)
.... ...+++.+||+||++... ....+...+.....++++|+||+..... .........+.+
T Consensus 94 ~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~ 158 (226)
T 2chg_A 94 RTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRF 158 (226)
T ss_dssp TSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred cccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeec
Confidence 1100 012568999999997652 2333333332334567888888765321 111122348999
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHH
Q 043056 308 GVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTIARA 356 (559)
Q Consensus 308 ~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~ 356 (559)
.+++.++..+++...+...... --.+..+.|++.++|+|..+..+...
T Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 159 KPVPKEAMKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999999999877421111 11456778999999999865554433
No 15
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.17 E-value=2.1e-10 Score=114.29 Aligned_cols=177 Identities=12% Similarity=0.067 Sum_probs=108.4
Q ss_pred CCCCCccchHHHHHHHHHHcC-----CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHH
Q 043056 151 KDYLPFESRMFTLRNILSALE-----DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGE 225 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 225 (559)
.....++|++..++.+..++. ......+.|+|++|+|||++|+.+++.... ..++++.+......++..
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~-----~~~~~~~~~~~~~~~l~~- 82 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV-----NLRVTSGPAIEKPGDLAA- 82 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC-----CEEEECTTTCCSHHHHHH-
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEeccccCChHHHHH-
Confidence 345678999988888777764 234467889999999999999999987642 234444433322222211
Q ss_pred HHHHhCCCCcCCChhhhHHHHHHHHHc--CCeEEEEEeCCCccc--ccchhcCCCC--------C----------CCCCc
Q 043056 226 IADKLGLKFHEESESGRANSLFKRIKA--EKKILIILDNIWENL--DLRVVGIPHG--------D----------GHKDC 283 (559)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~l~~--~kr~LlVlDdv~~~~--~~~~l~~~~~--------~----------~~~gs 283 (559)
.+.. .++.+|+||+++... ....+...+. . ..++.
T Consensus 83 -----------------------~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 83 -----------------------ILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp -----------------------HHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred -----------------------HHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 1111 345788899987542 1111110000 0 01235
Q ss_pred EEEEEecCcchh-ccCCCC-CCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHH
Q 043056 284 KVLLTARSLDVL-SGKMDS-RPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTIARAL 357 (559)
Q Consensus 284 ~IivTTR~~~va-~~~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L 357 (559)
++|.||...... ...... ...+.+.+++.++...++...+...... --.+..+.+++.|+|+|-.+..+...+
T Consensus 140 ~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR-ITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 677766644321 111222 2589999999999999998887532211 124567889999999998877666554
No 16
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.13 E-value=1.6e-10 Score=114.90 Aligned_cols=193 Identities=12% Similarity=0.074 Sum_probs=118.5
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADK 229 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 229 (559)
+.....++|++..++.+..++..+..+.+.++|++|+||||+|+.+++...........++++.+.......+ ++++..
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~ 95 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQIKH 95 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHHHH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHHHH
Confidence 3445668999999999999987666555999999999999999999988643211112445544443332222 222222
Q ss_pred hCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEEEecCcchh-ccCCCCCCeee
Q 043056 230 LGLKFHEESESGRANSLFKRIKAEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLLTARSLDVL-SGKMDSRPNFS 306 (559)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~va-~~~~~~~~~~~ 306 (559)
+..... .+..+++.++|+||++.. ..++.+...+.....++.+|+||+...-. .........+.
T Consensus 96 ~~~~~~-------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~ 162 (323)
T 1sxj_B 96 FAQKKL-------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILR 162 (323)
T ss_dssp HHHBCC-------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred HHhccc-------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEe
Confidence 110000 000246899999999764 23333433333334567888888664321 11122345899
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHHHHHH
Q 043056 307 IGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPV-SVVTIARAL 357 (559)
Q Consensus 307 l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~~~~L 357 (559)
+.+++.++..+++...+...... --.+....|++.|+|.|. ++..+....
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~a~~~l~~~~ 213 (323)
T 1sxj_B 163 YSKLSDEDVLKRLLQIIKLEDVK-YTNDGLEAIIFTAEGDMRQAINNLQSTV 213 (323)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999876421111 114567889999999994 455554443
No 17
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.01 E-value=6.5e-10 Score=110.76 Aligned_cols=191 Identities=13% Similarity=0.084 Sum_probs=117.1
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADK 229 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 229 (559)
|.....++|++..++.+..++..+..+.+.++|++|+||||+|+.+++.......-...+.++.+.......+ ...+..
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 99 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVI-REKVKE 99 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTT-HHHHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHH-HHHHHH
Confidence 3445668999999999999887666556999999999999999999988543210112344443332111111 111110
Q ss_pred hCCCCcCCChhhhHHHHHHH--HHcCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEEEecCcchh-ccCCCCCCe
Q 043056 230 LGLKFHEESESGRANSLFKR--IKAEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLLTARSLDVL-SGKMDSRPN 304 (559)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~~--l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~va-~~~~~~~~~ 304 (559)
.... +..+++.++|+||++.. ..+..+...+.....++++|+||....-. .........
T Consensus 100 ----------------~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~ 163 (327)
T 1iqp_A 100 ----------------FARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAI 163 (327)
T ss_dssp ----------------HHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEE
T ss_pred ----------------HHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcE
Confidence 0000 11256789999999764 23444433333334567888888764321 111112347
Q ss_pred eecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHh
Q 043056 305 FSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTIARALR 358 (559)
Q Consensus 305 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~ 358 (559)
+.+.+++.++...++...+...... --.+..+.|++.++|.|..+..+...+.
T Consensus 164 ~~~~~l~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 164 FRFRPLRDEDIAKRLRYIAENEGLE-LTEEGLQAILYIAEGDMRRAINILQAAA 216 (327)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCE-ECHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 8999999999999998876432211 1245678899999999986655544433
No 18
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.90 E-value=9.6e-09 Score=101.81 Aligned_cols=188 Identities=12% Similarity=0.083 Sum_probs=115.5
Q ss_pred CCCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHh
Q 043056 151 KDYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKL 230 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 230 (559)
.....++|++..++.+.+++..+..+.+.++|++|+|||++|+.+++.......-...+.++.+.......+
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-------- 85 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVV-------- 85 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTS--------
T ss_pred CCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHH--------
Confidence 344568999999999999888666556999999999999999999987532210011233444332111100
Q ss_pred CCCCcCCChhhhHHHHHHH--HHcCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEEEecCcch-hccCCCCCCee
Q 043056 231 GLKFHEESESGRANSLFKR--IKAEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLLTARSLDV-LSGKMDSRPNF 305 (559)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~--l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~v-a~~~~~~~~~~ 305 (559)
.......... +..+++.++|+|+++.. .....+...+.....++++|+||....- ..........+
T Consensus 86 ---------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i 156 (319)
T 2chq_A 86 ---------RHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVF 156 (319)
T ss_dssp ---------SHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEE
T ss_pred ---------HHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEE
Confidence 0001111100 01256789999999754 2334454444444456788888765432 11112234589
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHH
Q 043056 306 SIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTIARA 356 (559)
Q Consensus 306 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~ 356 (559)
.+.+++.++...++...+...... --.+....+++.++|.+..+......
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~~l~~ 206 (319)
T 2chq_A 157 RFKPVPKEAMKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINALQG 206 (319)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTCCC-BCHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999999999998877532221 12456788999999999765544433
No 19
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.85 E-value=4.7e-08 Score=95.71 Aligned_cols=169 Identities=9% Similarity=0.076 Sum_probs=106.8
Q ss_pred ccchHHHHHHHHHHcC----CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCC---C--CeEEEEEeCCCcCHHHHHHHH
Q 043056 156 FESRMFTLRNILSALE----DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKL---F--DQVVFVEVSQNQDIRKLQGEI 226 (559)
Q Consensus 156 ~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---f--~~~~wv~~s~~~~~~~~~~~i 226 (559)
+.||+++++.|...|. .+....+.|+|++|+|||++++.+++....... . -..++++.....+...++..|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 6799999999887765 567788999999999999999999998754211 1 136677777878888999999
Q ss_pred HHHhCCCCc-CCChhhhHHHHHHHH--HcCCeEEEEEeCCCcccccchhcCCC--C-CCCCCcEEEEEecCcchh----c
Q 043056 227 ADKLGLKFH-EESESGRANSLFKRI--KAEKKILIILDNIWENLDLRVVGIPH--G-DGHKDCKVLLTARSLDVL----S 296 (559)
Q Consensus 227 ~~~l~~~~~-~~~~~~~~~~l~~~l--~~~kr~LlVlDdv~~~~~~~~l~~~~--~-~~~~gs~IivTTR~~~va----~ 296 (559)
++++..... .......+..++..+ ..+++++++||+++....-+.+...+ + .......||.++...+.. .
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~ 181 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQIN 181 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHH
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcc
Confidence 999954321 112223344444443 23678999999997654222111111 0 011122334444332211 0
Q ss_pred cC---CCCCCeeecCCCCHHHHHHHHHHHhC
Q 043056 297 GK---MDSRPNFSIGVLNEEEAWNLFKKMAG 324 (559)
Q Consensus 297 ~~---~~~~~~~~l~~L~~~ea~~Lf~~~~~ 324 (559)
.. .-....+.+.|++.++-.+++.+++.
T Consensus 182 ~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 182 IMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp TCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 00 01124789999999999999998874
No 20
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.84 E-value=2.5e-08 Score=101.15 Aligned_cols=197 Identities=11% Similarity=0.123 Sum_probs=114.6
Q ss_pred CCCCCccchHHHHHHHHHHcCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 043056 151 KDYLPFESRMFTLRNILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADK 229 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 229 (559)
.....++|++..++.+..++..+. ...+.|+|++|+||||+|+.+++.......+.. ..+........+...
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-------~~~~~~~~~~~~~~~ 85 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-------TPCGVCDNCREIEQG 85 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS-------SCCSSSHHHHHHHTS
T ss_pred CchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-------CCCcccHHHHHHhcc
Confidence 344568999999999998886443 457899999999999999999987653321110 000000001111110
Q ss_pred hCCC-----CcCCChhhhHHHHHHHHH----cCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEEEecCcc-hhcc
Q 043056 230 LGLK-----FHEESESGRANSLFKRIK----AEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLLTARSLD-VLSG 297 (559)
Q Consensus 230 l~~~-----~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~-va~~ 297 (559)
.... .......+....+.+.+. .+++.++|+||++.. ...+.+...+.....+..+|++|.... +...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~ 165 (373)
T 1jr3_A 86 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (373)
T ss_dssp CCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHH
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHH
Confidence 0000 000011122334444433 256789999999754 234444333333344667777776433 2111
Q ss_pred CCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHH
Q 043056 298 KMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTIAR 355 (559)
Q Consensus 298 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~ 355 (559)
.......+.+.+++.++...++...+....... -.+....|++.++|.|..+..+..
T Consensus 166 l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~-~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 166 ILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH-EPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB-CHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHCCCCHHHHHHHHH
Confidence 223346899999999999999987763211111 145577899999999987765543
No 21
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.72 E-value=2.4e-08 Score=90.71 Aligned_cols=155 Identities=14% Similarity=0.162 Sum_probs=88.1
Q ss_pred CCCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCC-----CCeEEEEEeCCCcCHHHHHHH
Q 043056 151 KDYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKL-----FDQVVFVEVSQNQDIRKLQGE 225 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~s~~~~~~~~~~~ 225 (559)
.....++||+++++.+.+++.....+.+.|+|++|+|||+||+.+++....... ....++++++. +.
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-- 90 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV-- 90 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------HH--
T ss_pred ccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------Hh--
Confidence 345668999999999999998766678899999999999999999988643210 12344443321 10
Q ss_pred HHHHhCCCCcCCChhhhHHHHHHHH-HcCCeEEEEEeCCCccc---------ccchhcCCCCCCCCCcEEEEEecCcchh
Q 043056 226 IADKLGLKFHEESESGRANSLFKRI-KAEKKILIILDNIWENL---------DLRVVGIPHGDGHKDCKVLLTARSLDVL 295 (559)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~l-~~~kr~LlVlDdv~~~~---------~~~~l~~~~~~~~~gs~IivTTR~~~va 295 (559)
...............+...+ ..+++.+|+|||++... .+..+...+.. ..+..+|.||......
T Consensus 91 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~ 164 (195)
T 1jbk_A 91 -----AGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGATTLDEYR 164 (195)
T ss_dssp -----TTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH-TTSCCEEEEECHHHHH
T ss_pred -----ccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-cCCeEEEEeCCHHHHH
Confidence 00000000111222333333 23568899999997542 11111111111 2245567776654311
Q ss_pred ------ccCCCCCCeeecCCCCHHHHHHHH
Q 043056 296 ------SGKMDSRPNFSIGVLNEEEAWNLF 319 (559)
Q Consensus 296 ------~~~~~~~~~~~l~~L~~~ea~~Lf 319 (559)
.........+.+.+++.++..+++
T Consensus 165 ~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 165 QYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 111122336889999988876654
No 22
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.63 E-value=9.7e-08 Score=96.01 Aligned_cols=198 Identities=13% Similarity=0.135 Sum_probs=113.5
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCC-CeEEEEEeCCCcCHHHHHHHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLF-DQVVFVEVSQNQDIRKLQGEIAD 228 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~ 228 (559)
|.....++|++..++.+..++..+....+.++|++|+||||+|+.+++.......+ .....++.+.......+ .+...
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 111 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REKVK 111 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHHHH
Confidence 34456689999999999999986655558999999999999999999875421001 12334444433333222 22221
Q ss_pred HhC-CCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc--ccchhcCCCCCCCCCcEEEEEecCcc-hhccCCCCCCe
Q 043056 229 KLG-LKFHEESESGRANSLFKRIKAEKKILIILDNIWENL--DLRVVGIPHGDGHKDCKVLLTARSLD-VLSGKMDSRPN 304 (559)
Q Consensus 229 ~l~-~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~~-va~~~~~~~~~ 304 (559)
.+. ........ . .......+++-+|++|+++... ....+...+.......++|++|.... +..........
T Consensus 112 ~~~~~~~~~~~~--~---~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~ 186 (353)
T 1sxj_D 112 NFARLTVSKPSK--H---DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSK 186 (353)
T ss_dssp HHHHSCCCCCCT--T---HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEE
T ss_pred HHhhhcccccch--h---hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCce
Confidence 111 00000000 0 0011112356799999986542 22333322222234567777775432 21111112347
Q ss_pred eecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHH
Q 043056 305 FSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTIA 354 (559)
Q Consensus 305 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 354 (559)
+.+.+++.++....+...+...... --.+..+.|++.++|.|-.+..+.
T Consensus 187 i~~~~~~~~~~~~~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 187 FRFKALDASNAIDRLRFISEQENVK-CDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 8999999999999998876422111 114568889999999997654443
No 23
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.59 E-value=9.3e-08 Score=90.38 Aligned_cols=175 Identities=11% Similarity=0.088 Sum_probs=102.9
Q ss_pred CCCccch---HHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 043056 153 YLPFESR---MFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADK 229 (559)
Q Consensus 153 ~~~~~gR---~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 229 (559)
...++++ ...++.+..+...+..+.+.|+|++|+||||||+.+++..... ...+.|++.+..... +
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~------~--- 95 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI------S--- 95 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS------C---
T ss_pred hhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH------H---
Confidence 3456652 4556666666655566789999999999999999999887654 234667765432110 0
Q ss_pred hCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcccc----cchhcCCCCC-CCCC-cEEEEEecCcchh-ccC----
Q 043056 230 LGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENLD----LRVVGIPHGD-GHKD-CKVLLTARSLDVL-SGK---- 298 (559)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~----~~~l~~~~~~-~~~g-s~IivTTR~~~va-~~~---- 298 (559)
. .....+ .++.+||+||++.... ...+...+.. ...+ .++|+||+...-. ...
T Consensus 96 ----------~----~~~~~~--~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l 159 (242)
T 3bos_A 96 ----------T----ALLEGL--EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDL 159 (242)
T ss_dssp ----------G----GGGTTG--GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHH
T ss_pred ----------H----HHHHhc--cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhh
Confidence 0 000111 3467999999975421 1222111100 0112 2478877643210 000
Q ss_pred C---CCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHH
Q 043056 299 M---DSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTIAR 355 (559)
Q Consensus 299 ~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~ 355 (559)
. .....+.+.+++.++..+++...+..... .--.+..+.|++.++|.+-.+..+..
T Consensus 160 ~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 160 VSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL-QLPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp HHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC-CCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 0 11268999999999999999987642111 11245678899999999876655433
No 24
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.58 E-value=7.4e-07 Score=86.69 Aligned_cols=181 Identities=19% Similarity=0.213 Sum_probs=105.2
Q ss_pred CCCCCccchHHHHHHHHHHcCC-------------CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCc
Q 043056 151 KDYLPFESRMFTLRNILSALED-------------PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQ 217 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 217 (559)
.....++|.+..++.|.+.+.. ...+.+.|+|++|+|||+||+.+++..... .+.++.+.-.
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~-----~~~v~~~~~~ 88 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT-----FIRVVGSELV 88 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE-----EEEEEGGGGC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehHHHH
Confidence 3456688999998888877631 345679999999999999999999876432 2333332211
Q ss_pred CHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc------------c----cchhcCCCC--CC
Q 043056 218 DIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL------------D----LRVVGIPHG--DG 279 (559)
Q Consensus 218 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~------------~----~~~l~~~~~--~~ 279 (559)
. .. ..........+.......++.+|+|||++... . +..+...+. ..
T Consensus 89 ~--------------~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 89 K--------------KF-IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp C--------------CS-TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred H--------------hc-cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 0 00 00111223334444444667899999996431 1 111111111 12
Q ss_pred CCCcEEEEEecCcchhc-cCC---CCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCC-hHHHHHH
Q 043056 280 HKDCKVLLTARSLDVLS-GKM---DSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGL-PVSVVTI 353 (559)
Q Consensus 280 ~~gs~IivTTR~~~va~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLai~~~ 353 (559)
..+..||.||....... ... .....+.+.+.+.++..+++...+........ .....+++.+.|. |-.|..+
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED--VNLEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHHCTTCCHHHHHHH
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc--CCHHHHHHHcCCCCHHHHHHH
Confidence 34567777887543321 011 12347899999999999999988864322211 1145677788774 5444443
No 25
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.55 E-value=7.4e-07 Score=92.08 Aligned_cols=181 Identities=14% Similarity=0.183 Sum_probs=107.2
Q ss_pred cCCCCCccchHHHH---HHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHH
Q 043056 150 NKDYLPFESRMFTL---RNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEI 226 (559)
Q Consensus 150 ~~~~~~~~gR~~~~---~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 226 (559)
+.....++|.+..+ ..|...+..+....+.|+|++|+||||||+.+++..... | ..++... .....+ +.+
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~--f---~~l~a~~-~~~~~i-r~~ 94 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD--V---ERISAVT-SGVKEI-REA 94 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE--E---EEEETTT-CCHHHH-HHH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC--e---EEEEecc-CCHHHH-HHH
Confidence 44566788988887 667777766666789999999999999999999876432 2 2222211 122221 111
Q ss_pred HHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEE-EecCcc--hhccCCCC
Q 043056 227 ADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLL-TARSLD--VLSGKMDS 301 (559)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iiv-TTR~~~--va~~~~~~ 301 (559)
+. ........+++.+|+||+++.. ...+.+...+.. ....+|. ||.+.. +.......
T Consensus 95 ~~----------------~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR 156 (447)
T 3pvs_A 95 IE----------------RARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSR 156 (447)
T ss_dssp HH----------------HHHHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTT
T ss_pred HH----------------HHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCc
Confidence 11 1111112367899999999754 233333333322 2234444 444432 11112233
Q ss_pred CCeeecCCCCHHHHHHHHHHHhCCCC------CCcchHHHHHHHHHHhCCChHHHHHHHH
Q 043056 302 RPNFSIGVLNEEEAWNLFKKMAGDYI------EGSEFQSVARDVAKECAGLPVSVVTIAR 355 (559)
Q Consensus 302 ~~~~~l~~L~~~ea~~Lf~~~~~~~~------~~~~~~~~~~~I~~~c~GlPLai~~~~~ 355 (559)
...+.+++++.++...++.+.+.... ...--.+..+.|++.++|.+-.+..+..
T Consensus 157 ~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le 216 (447)
T 3pvs_A 157 ARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLE 216 (447)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred eeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 45889999999999999998874311 1112245678899999999865554433
No 26
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.55 E-value=3.9e-07 Score=96.43 Aligned_cols=209 Identities=10% Similarity=0.032 Sum_probs=116.0
Q ss_pred cCCCCCccchHHHHHHHHHHcCC-----------------CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEE
Q 043056 150 NKDYLPFESRMFTLRNILSALED-----------------PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVE 212 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~-----------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 212 (559)
|.....++|++..++.+..++.. +..+.+.|+|++|+||||+|+.+++... + .++.++
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~in 109 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQN 109 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEEC
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEEe
Confidence 34456789999999999998863 1347899999999999999999998873 2 244555
Q ss_pred eCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcccc-----cchhcCCCCCCCCCcEEEE
Q 043056 213 VSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENLD-----LRVVGIPHGDGHKDCKVLL 287 (559)
Q Consensus 213 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-----~~~l~~~~~~~~~gs~Iiv 287 (559)
.+...... +....+.................. .....+++.+|+||+++.... +..+...+.. .+..||+
T Consensus 110 ~s~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIl 184 (516)
T 1sxj_A 110 ASDVRSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLIL 184 (516)
T ss_dssp TTSCCCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEE
T ss_pred CCCcchHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEE
Confidence 55544432 222222211110000000000000 001125689999999975422 1222211111 2334565
Q ss_pred EecCcc--hhccCCCCCCeeecCCCCHHHHHHHHHHHhCC--CCCCcchHHHHHHHHHHhCCCh-HHHHHHHHHHhcC--
Q 043056 288 TARSLD--VLSGKMDSRPNFSIGVLNEEEAWNLFKKMAGD--YIEGSEFQSVARDVAKECAGLP-VSVVTIARALRNK-- 360 (559)
Q Consensus 288 TTR~~~--va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~--~~~~~~~~~~~~~I~~~c~GlP-Lai~~~~~~L~~~-- 360 (559)
++.... ...........+.+.+++.++..+++...+.. ...+ .+....|++.++|.+ -++..+..+....
T Consensus 185 i~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~---~~~l~~la~~s~GdiR~~i~~L~~~~~~~~~ 261 (516)
T 1sxj_A 185 ICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD---PNVIDRLIQTTRGDIRQVINLLSTISTTTKT 261 (516)
T ss_dssp EESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHTTTCHHHHHHHHTHHHHHSSC
T ss_pred EEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHHHHHhcCCC
Confidence 554322 11112233458999999999999998876641 1112 234678999999954 5555554333221
Q ss_pred -ChHHHHHHHHH
Q 043056 361 -RLFEWKDALEQ 371 (559)
Q Consensus 361 -~~~~w~~~l~~ 371 (559)
+.+.-..++..
T Consensus 262 It~~~v~~~~~~ 273 (516)
T 1sxj_A 262 INHENINEISKA 273 (516)
T ss_dssp CCTTHHHHHHHH
T ss_pred CchHHHHHHHHh
Confidence 44444444443
No 27
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.55 E-value=1.9e-06 Score=83.21 Aligned_cols=196 Identities=13% Similarity=0.151 Sum_probs=103.1
Q ss_pred CccchHHHHHHHHH-------HcC---CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHH
Q 043056 155 PFESRMFTLRNILS-------ALE---DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQG 224 (559)
Q Consensus 155 ~~~gR~~~~~~l~~-------~L~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 224 (559)
+++|....+++++. .+. ....+.+.|+|++|+|||+||+.+++.... . .+.++.+...
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~----~-~~~i~~~~~~------- 101 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNF----P-FIKICSPDKM------- 101 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTC----S-EEEEECGGGC-------
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC----C-EEEEeCHHHh-------
Confidence 35566555444444 332 445678999999999999999999997532 2 2222322110
Q ss_pred HHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcc-----------cc-cchhcCCC---CCCCCCcEEEEEe
Q 043056 225 EIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWEN-----------LD-LRVVGIPH---GDGHKDCKVLLTA 289 (559)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~-----------~~-~~~l~~~~---~~~~~gs~IivTT 289 (559)
.+. ...........+.......++.+|+|||++.. .. ...+...+ ........||.||
T Consensus 102 -----~g~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~tt 174 (272)
T 1d2n_A 102 -----IGF--SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTT 174 (272)
T ss_dssp -----TTC--CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEE
T ss_pred -----cCC--chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEec
Confidence 000 00000112223333333356899999998643 01 11121111 1122344567777
Q ss_pred cCcchhcc--CCCC-CCeeecCCCCH-HHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCC------hHHHHHHHHHHhc
Q 043056 290 RSLDVLSG--KMDS-RPNFSIGVLNE-EEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGL------PVSVVTIARALRN 359 (559)
Q Consensus 290 R~~~va~~--~~~~-~~~~~l~~L~~-~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl------PLai~~~~~~L~~ 359 (559)
........ .... ...+.+.+++. ++...++.+... . ..+....|++.+.|. +-++..+-.+-..
T Consensus 175 n~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~--~----~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~ 248 (272)
T 1d2n_A 175 SRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN--F----KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQM 248 (272)
T ss_dssp SCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC--S----CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTS
T ss_pred CChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC--C----CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhh
Confidence 76533211 1222 45789999998 677777665321 1 134577888899883 3333333322222
Q ss_pred CChHHHHHHHHHhcCC
Q 043056 360 KRLFEWKDALEQLRRP 375 (559)
Q Consensus 360 ~~~~~w~~~l~~l~~~ 375 (559)
.+...+..+++.+...
T Consensus 249 ~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 249 DPEYRVRKFLALLREE 264 (272)
T ss_dssp CGGGHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHc
Confidence 2455666666655443
No 28
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.54 E-value=2.4e-06 Score=81.78 Aligned_cols=181 Identities=16% Similarity=0.172 Sum_probs=98.9
Q ss_pred CCCccchHHHHHHHHHHc---CC---------CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHH
Q 043056 153 YLPFESRMFTLRNILSAL---ED---------PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIR 220 (559)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L---~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 220 (559)
...++|.+..++.+.+.+ .. ...+.+.|+|++|+|||++|+.+++..... .+.++.+.-.+.
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~-----~~~~~~~~~~~~- 78 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP-----FLAMAGAEFVEV- 78 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC-----EEEEETTTTSSS-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----EEEechHHHHhh-
Confidence 445777776666554433 21 234568899999999999999999876432 344444332110
Q ss_pred HHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc-------------c----cchhcCCCCC--CCC
Q 043056 221 KLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL-------------D----LRVVGIPHGD--GHK 281 (559)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~-------------~----~~~l~~~~~~--~~~ 281 (559)
. ..........+........+.+|+||+++... . +..+...+.. ...
T Consensus 79 -------------~-~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 79 -------------I-GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp -------------S-TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred -------------c-cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 0 00111222334444444567999999997541 1 1112111111 223
Q ss_pred CcEEEEEecCcchhc-cCC---CCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHH
Q 043056 282 DCKVLLTARSLDVLS-GKM---DSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPV-SVVTI 353 (559)
Q Consensus 282 gs~IivTTR~~~va~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~ 353 (559)
+..||.||....... ... .....+.+.+.+.++-.+++...+...............+++.+.|.+- .|..+
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 556777776543221 111 1235788999999999999988775322222222234678888888754 44433
No 29
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.47 E-value=5.5e-07 Score=90.59 Aligned_cols=197 Identities=10% Similarity=0.071 Sum_probs=106.3
Q ss_pred CCCCCccchHHHHHHHHHHc-CCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCC----CCe------------------
Q 043056 151 KDYLPFESRMFTLRNILSAL-EDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKL----FDQ------------------ 207 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L-~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~------------------ 207 (559)
.....++|++...+.+..++ ..+....+.|+|+.|+||||+++.++........ ++.
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 90 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSS 90 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEEC
T ss_pred CCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecc
Confidence 34456889999999999988 6555444999999999999999999885321110 110
Q ss_pred --EEEEEeCCCc-CHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc--ccchhcCCCCCCCCC
Q 043056 208 --VVFVEVSQNQ-DIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL--DLRVVGIPHGDGHKD 282 (559)
Q Consensus 208 --~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~g 282 (559)
.+.+..+... ......++++..+.....-... . . ...+. +++-+++||++.... ....+...+.....+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~-~-ls~l~-~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 91 PYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQ---D-S-KDGLA-HRYKCVIINEANSLTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp SSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTT
T ss_pred cceEEecHhhcCCcchHHHHHHHHHHHHhcccccc---c-c-ccccC-CCCeEEEEeCccccCHHHHHHHHHHHHhhcCC
Confidence 1111111100 0000122222222111000000 0 0 00011 356799999997642 122232222222346
Q ss_pred cEEEEEecCcc-hhccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcch-HHHHHHHHHHhCCChHHHHHHH
Q 043056 283 CKVLLTARSLD-VLSGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEF-QSVARDVAKECAGLPVSVVTIA 354 (559)
Q Consensus 283 s~IivTTR~~~-va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~-~~~~~~I~~~c~GlPLai~~~~ 354 (559)
+.+|++|.+.. +..........+++.+++.++....+...+...... -- .+....|++.++|.+-.+..+.
T Consensus 165 ~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 165 IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ-LETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE-ECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 77888776533 221122334689999999999999998876421110 01 2457789999999986554443
No 30
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.47 E-value=8.3e-07 Score=88.12 Aligned_cols=181 Identities=13% Similarity=0.102 Sum_probs=104.4
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIAD 228 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (559)
|.....++|++..++.+..++..+. ..++.+.|++|+|||++|+.+++.... ..+.++.+.. ... .++.++.
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~-----~~~~i~~~~~-~~~-~i~~~~~ 94 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA-----DMMFVNGSDC-KID-FVRGPLT 94 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTE-----EEEEEETTTC-CHH-HHHTHHH
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCC-----CEEEEccccc-CHH-HHHHHHH
Confidence 4456778999999999999887544 357788888999999999999987642 2455554432 222 2222221
Q ss_pred HhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc---ccchhcCCCCCCCCCcEEEEEecCcchh-ccCCCCCCe
Q 043056 229 KLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL---DLRVVGIPHGDGHKDCKVLLTARSLDVL-SGKMDSRPN 304 (559)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~---~~~~l~~~~~~~~~gs~IivTTR~~~va-~~~~~~~~~ 304 (559)
....... ..+++.+|++||++... ....+...+.....++++|+||....-. .........
T Consensus 95 ~~~~~~~---------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~ 159 (324)
T 3u61_B 95 NFASAAS---------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRV 159 (324)
T ss_dssp HHHHBCC---------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEE
T ss_pred HHHhhcc---------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcE
Confidence 1100000 01367899999998654 2333322222222456788888764321 111112347
Q ss_pred eecCCCCHHHHHHHHHH-------HhCCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 043056 305 FSIGVLNEEEAWNLFKK-------MAGDYIEGSEFQSVARDVAKECAGLPVSVVT 352 (559)
Q Consensus 305 ~~l~~L~~~ea~~Lf~~-------~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 352 (559)
+.+++++.++-.+++.. .+......-.-.+....|++.++|.+-.+..
T Consensus 160 i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 160 ITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHH
Confidence 99999998885443322 2221111111025677899999998754433
No 31
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.45 E-value=1.3e-05 Score=79.32 Aligned_cols=183 Identities=16% Similarity=0.152 Sum_probs=104.6
Q ss_pred CCCCccchHHHHHHHHHHcC------------CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCH
Q 043056 152 DYLPFESRMFTLRNILSALE------------DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDI 219 (559)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 219 (559)
....+.|.+..++.|.+.+. ....+-|.++|++|+|||+||+.+++..... ..+.++.+.-.+
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~----~~~~i~~~~l~~- 84 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS----TFFSISSSDLVS- 84 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC----EEEEEECCSSCC-
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC----cEEEEEhHHHHh-
Confidence 34557787777777665542 1234679999999999999999999876211 223344332110
Q ss_pred HHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcccc-------------cchhcCC---CCCCCCCc
Q 043056 220 RKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENLD-------------LRVVGIP---HGDGHKDC 283 (559)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~~---~~~~~~gs 283 (559)
...+ ........+.......++.+|+||+++.... ...+... +.....+.
T Consensus 85 -------------~~~g-~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v 150 (322)
T 1xwi_A 85 -------------KWLG-ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 150 (322)
T ss_dssp -------------SSCC-SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTE
T ss_pred -------------hhhh-HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCE
Confidence 1111 1122334444444446789999999975411 0111111 11123455
Q ss_pred EEEEEecCcchhc-c-CCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh-HHHHHHH
Q 043056 284 KVLLTARSLDVLS-G-KMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLP-VSVVTIA 354 (559)
Q Consensus 284 ~IivTTR~~~va~-~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~~ 354 (559)
.||.||....... . .......+.+...+.++-.++++..+....... -......|++.+.|.. -.|..+.
T Consensus 151 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 151 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL-TEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC-CHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 6666775443211 0 012335788999999999999998876432211 1345678899998874 3454443
No 32
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.44 E-value=5.6e-06 Score=83.20 Aligned_cols=183 Identities=10% Similarity=0.107 Sum_probs=105.1
Q ss_pred CCCCccchHHHHHHHHHHcC------------CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCH
Q 043056 152 DYLPFESRMFTLRNILSALE------------DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDI 219 (559)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 219 (559)
....++|.+..++.|.+.+. ....+.|.|+|++|+|||+||+.+++.... ..+.++.+.-..
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~i~~~~l~~- 155 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA-----TFFSISASSLTS- 155 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC-----EEEEEEGGGGCC-
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC-----eEEEEehHHhhc-
Confidence 34568899888888877663 134568999999999999999999987532 234454432111
Q ss_pred HHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc-------------ccchhcCCCC----CCCCC
Q 043056 220 RKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL-------------DLRVVGIPHG----DGHKD 282 (559)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~-------------~~~~l~~~~~----~~~~g 282 (559)
... .........+.......++.+|+||+++... ....+...+. ....+
T Consensus 156 -------------~~~-g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~ 221 (357)
T 3d8b_A 156 -------------KWV-GEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDR 221 (357)
T ss_dssp -------------SST-THHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCC
T ss_pred -------------ccc-chHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 000 0011122333333334567999999995321 0112211111 11234
Q ss_pred cEEEEEecCcchh-ccC-CCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCC-hHHHHHHHH
Q 043056 283 CKVLLTARSLDVL-SGK-MDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGL-PVSVVTIAR 355 (559)
Q Consensus 283 s~IivTTR~~~va-~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLai~~~~~ 355 (559)
..||.||...... ... ......+.+...+.++..+++...+...... -..+....|++.+.|. +-.|..+..
T Consensus 222 v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 222 ILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC-LSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC-CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC-ccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5666677653221 111 1223477899999999999998876432111 1134677899999984 555555543
No 33
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.43 E-value=2e-06 Score=85.86 Aligned_cols=174 Identities=11% Similarity=0.112 Sum_probs=102.9
Q ss_pred CCCCccchHHHHHHHHHHcC-----CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHH
Q 043056 152 DYLPFESRMFTLRNILSALE-----DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEI 226 (559)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 226 (559)
....++|++..++.+..++. ......+.|+|++|+|||+||+.+++..... .+.++.+.......
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~-----~~~~~~~~~~~~~~----- 96 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN-----IKTTAAPMIEKSGD----- 96 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC-----EEEEEGGGCCSHHH-----
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC-----eEEecchhccchhH-----
Confidence 45668999999888888775 2344578999999999999999998875422 23333322111111
Q ss_pred HHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc--ccchhcCCC------------------CCCCCCcEEE
Q 043056 227 ADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL--DLRVVGIPH------------------GDGHKDCKVL 286 (559)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~------------------~~~~~gs~Ii 286 (559)
....... ..+..+|+||+++... ....+...+ ....++..+|
T Consensus 97 ----------------~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 97 ----------------LAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp ----------------HHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred ----------------HHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 1111111 1356788999987542 111111110 0011235666
Q ss_pred EEecCcchh-ccC-CCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHH
Q 043056 287 LTARSLDVL-SGK-MDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTIA 354 (559)
Q Consensus 287 vTTR~~~va-~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 354 (559)
.+|...... ... ......+.+.+++.++...++...+..... .--.+..+.|++.+.|+|-.+..+.
T Consensus 159 ~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 159 GATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK-TCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-EECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 666653321 111 122368999999999999999887752211 1124567888899999995554443
No 34
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.41 E-value=5.2e-06 Score=82.21 Aligned_cols=182 Identities=16% Similarity=0.139 Sum_probs=106.7
Q ss_pred CCCCCccchHHHHHHHHHHcC------------CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcC
Q 043056 151 KDYLPFESRMFTLRNILSALE------------DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQD 218 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 218 (559)
.....++|.+..++.|.+.+. ....+-+.++|++|+|||+||+.+++..... .+.++.+
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~-----~~~v~~~---- 85 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS---- 85 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE-----EEEEEHH----
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC-----EEEEchH----
Confidence 345678899988888887762 1224579999999999999999999876432 2333321
Q ss_pred HHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcccc-------------cchhcC---CCCCCCCC
Q 043056 219 IRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENLD-------------LRVVGI---PHGDGHKD 282 (559)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~---~~~~~~~g 282 (559)
++.. ... .........+.......++.+|+||+++.... ...+.. .+.....+
T Consensus 86 --~l~~--------~~~-g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 154 (322)
T 3eie_A 86 --DLVS--------KWM-GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 154 (322)
T ss_dssp --HHHT--------TTG-GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred --HHhh--------ccc-chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCc
Confidence 1110 000 01122233444444446779999999974321 111111 11122345
Q ss_pred cEEEEEecCcchhcc--CCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCC-hHHHHHH
Q 043056 283 CKVLLTARSLDVLSG--KMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGL-PVSVVTI 353 (559)
Q Consensus 283 s~IivTTR~~~va~~--~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLai~~~ 353 (559)
..||.||........ .......+.+...+.++-.+++...+........ ......|++.+.|. +-.|..+
T Consensus 155 v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 155 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT-KEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp EEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC-HHHHHHHHHTTTTCCHHHHHHH
T ss_pred eEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC-HHHHHHHHHHcCCCCHHHHHHH
Confidence 666767765432210 0122357788999999999999998864322211 34567888888884 4444433
No 35
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.38 E-value=2.2e-06 Score=85.62 Aligned_cols=184 Identities=14% Similarity=0.095 Sum_probs=105.5
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-eEEEEEeCCCcCHHHHHHHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFD-QVVFVEVSQNQDIRKLQGEIAD 228 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~ 228 (559)
|.....++|.+..++.|..++..++.+.+.++|++|+||||+|+.++....... +. .+..++.+.......+. +++.
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~-~~~~~~~~~~~~~~~~~~ir-~~i~ 98 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN-YSNMVLELNASDDRGIDVVR-NQIK 98 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS-HHHHEEEECTTSCCSHHHHH-THHH
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC-ccceEEEEcCcccccHHHHH-HHHH
Confidence 344556788888888888888766655589999999999999999998764321 11 12333333322222221 1111
Q ss_pred HhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc--ccchhcCCCCCCCCCcEEEEEecCcc-hhccCCCCCCee
Q 043056 229 KLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL--DLRVVGIPHGDGHKDCKVLLTARSLD-VLSGKMDSRPNF 305 (559)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~~-va~~~~~~~~~~ 305 (559)
.+..... ...+.+-++|+|+++... ..+.+...+......+++|++|.... +..........+
T Consensus 99 ~~~~~~~--------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~ 164 (340)
T 1sxj_C 99 DFASTRQ--------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRF 164 (340)
T ss_dssp HHHHBCC--------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred HHHhhcc--------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeE
Confidence 1100000 001346789999986532 22223222222234566777765432 211112233478
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHH
Q 043056 306 SIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSV 350 (559)
Q Consensus 306 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 350 (559)
.+.+++.++..+.+...+......- -.+..+.|++.++|.+--+
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~~i-~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 165 RFQPLPQEAIERRIANVLVHEKLKL-SPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCCB-CHHHHHHHHHHHTTCHHHH
T ss_pred eccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 9999999999998887763211111 1346778999999988643
No 36
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.37 E-value=5.5e-06 Score=82.47 Aligned_cols=170 Identities=11% Similarity=0.090 Sum_probs=102.6
Q ss_pred HHHHHHHHHHcCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhcccC--------------------CCCeEEEEEeC---C
Q 043056 160 MFTLRNILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKVKSDK--------------------LFDQVVFVEVS---Q 215 (559)
Q Consensus 160 ~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~~s---~ 215 (559)
++..+.+...+..++ ...+.++|+.|+|||++|+.+.+...... |++ ..++... .
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~ 86 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGKN 86 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTCS
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccCC
Confidence 455667777666554 45799999999999999999998764321 122 2233221 1
Q ss_pred CcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc--ccchhcCCCCCCCCCcEEEEEecCcc
Q 043056 216 NQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL--DLRVVGIPHGDGHKDCKVLLTARSLD 293 (559)
Q Consensus 216 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~~ 293 (559)
...... .+++.+.+.... ..+++-++|+|+++... ..+.+...+.....++.+|++|.+..
T Consensus 87 ~~~i~~-ir~l~~~~~~~~----------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 87 TLGVDA-VREVTEKLNEHA----------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp SBCHHH-HHHHHHHTTSCC----------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CCCHHH-HHHHHHHHhhcc----------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 112211 122222221110 02567899999997642 23344444433345667777776543
Q ss_pred -hhccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 043056 294 -VLSGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTI 353 (559)
Q Consensus 294 -va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 353 (559)
+..........+.+.+++.++..+.+..... . ..+.+..+++.++|.|..+..+
T Consensus 150 ~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~--~----~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 150 RLLATLRSRCRLHYLAPPPEQYAVTWLSREVT--M----SQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC--C----CHHHHHHHHHHTTTCHHHHHHT
T ss_pred hCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC--C----CHHHHHHHHHHcCCCHHHHHHH
Confidence 3222233456899999999999999988751 1 1345678999999999765443
No 37
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.35 E-value=3.6e-06 Score=85.05 Aligned_cols=196 Identities=10% Similarity=0.079 Sum_probs=102.8
Q ss_pred CCCccchHHHHHH---HHHHcCCCC--ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEe----CCCcCHHHHH
Q 043056 153 YLPFESRMFTLRN---ILSALEDPD--VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEV----SQNQDIRKLQ 223 (559)
Q Consensus 153 ~~~~~gR~~~~~~---l~~~L~~~~--~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~----s~~~~~~~~~ 223 (559)
...++|++...+. +...+..+. .+.+.|+|++|+|||++|+.+++.......| +.++. +......+.+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF---TAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE---EEEEGGGGSCSSSCHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc---ccccchhhhhcccchhHHH
Confidence 5578999887665 444444433 2589999999999999999999987643222 22222 1223333444
Q ss_pred HHHHHHh-CCC--------------------C-------cC--CChhhhHH----HHHHHH-HcCC----eEEEEEeCCC
Q 043056 224 GEIADKL-GLK--------------------F-------HE--ESESGRAN----SLFKRI-KAEK----KILIILDNIW 264 (559)
Q Consensus 224 ~~i~~~l-~~~--------------------~-------~~--~~~~~~~~----~l~~~l-~~~k----r~LlVlDdv~ 264 (559)
....+.. +.. . .. ........ ...... ..++ +.+|+||+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 4433321 000 0 00 00011111 111111 1233 3599999997
Q ss_pred cc--cccchhcCCCCCCCCCcEEEEEecC-c------------chhccCCCCCCeeecCCCCHHHHHHHHHHHhCCCCCC
Q 043056 265 EN--LDLRVVGIPHGDGHKDCKVLLTARS-L------------DVLSGKMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEG 329 (559)
Q Consensus 265 ~~--~~~~~l~~~~~~~~~gs~IivTTR~-~------------~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 329 (559)
.. .....+...+...... .++++|.. . .+..........+.+.+++.++..+++...+.....
T Consensus 200 ~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~- 277 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDV- 277 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTC-
T ss_pred ccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 54 2223333333222222 34444431 1 010111122346899999999999999987752211
Q ss_pred cchHHHHHHHHHHhC-CChHHHHHH
Q 043056 330 SEFQSVARDVAKECA-GLPVSVVTI 353 (559)
Q Consensus 330 ~~~~~~~~~I~~~c~-GlPLai~~~ 353 (559)
.--.+....|++.+. |.|-.+..+
T Consensus 278 ~~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 278 EMSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp CBCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHH
Confidence 112456788899997 777554433
No 38
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.35 E-value=1.5e-05 Score=81.04 Aligned_cols=183 Identities=16% Similarity=0.150 Sum_probs=104.4
Q ss_pred CCCCCccchHHHHHHHHHHcC------------CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcC
Q 043056 151 KDYLPFESRMFTLRNILSALE------------DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQD 218 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 218 (559)
.....++|.+..++.|.+++. ....+.+.|+|++|+|||+||+.+++.... ..+.++.+.-..
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~-----~~~~v~~~~l~~ 186 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA-----TFFNISAASLTS 186 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEECSCCC--
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC-----cEEEeeHHHhhc
Confidence 345678999999998888772 123468999999999999999999887542 233343332211
Q ss_pred HHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc--------c-----cchhcCCC---C-CCCC
Q 043056 219 IRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL--------D-----LRVVGIPH---G-DGHK 281 (559)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--------~-----~~~l~~~~---~-~~~~ 281 (559)
. . .. ........+.......++.+|+||+++... . ...+...+ . ....
T Consensus 187 ~--~------------~g-~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 251 (389)
T 3vfd_A 187 K--Y------------VG-EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDD 251 (389)
T ss_dssp --------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----
T ss_pred c--c------------cc-hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCC
Confidence 0 0 00 011223334444444567899999996431 0 01111111 1 1123
Q ss_pred CcEEEEEecCcchh-ccCC-CCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHHH
Q 043056 282 DCKVLLTARSLDVL-SGKM-DSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPV-SVVTIA 354 (559)
Q Consensus 282 gs~IivTTR~~~va-~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~~ 354 (559)
...||.||...... .... .....+.+...+.++-..++...+......- ..+....|++.+.|..- +|..+.
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l-~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPL-TQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCS-CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45566667543322 1111 2234688999999999999998875432211 23467789999988654 554443
No 39
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.33 E-value=7.2e-07 Score=87.86 Aligned_cols=153 Identities=14% Similarity=0.138 Sum_probs=83.5
Q ss_pred ccchHHHHHHHHHHcC---------------CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHH
Q 043056 156 FESRMFTLRNILSALE---------------DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIR 220 (559)
Q Consensus 156 ~~gR~~~~~~l~~~L~---------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 220 (559)
++|.+..++.+.+.+. ......+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 33 i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~---- 108 (309)
T 3syl_A 33 LIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD---- 108 (309)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG----
T ss_pred ccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH----
Confidence 6677666666554432 234457999999999999999998887654322211112222211
Q ss_pred HHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcc-----------cccchhcCCCCCCCCCcEEEEEe
Q 043056 221 KLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWEN-----------LDLRVVGIPHGDGHKDCKVLLTA 289 (559)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~IivTT 289 (559)
.+.....+. .......+.... +..+|+||+++.. .....+...+.....+..||.||
T Consensus 109 --------~l~~~~~g~-~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~ 176 (309)
T 3syl_A 109 --------DLVGQYIGH-TAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAG 176 (309)
T ss_dssp --------GTCCSSTTC-HHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEE
T ss_pred --------Hhhhhcccc-cHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 000011111 111122222222 3469999999743 12233333333334566788887
Q ss_pred cCcchh------ccCC-CCCCeeecCCCCHHHHHHHHHHHhC
Q 043056 290 RSLDVL------SGKM-DSRPNFSIGVLNEEEAWNLFKKMAG 324 (559)
Q Consensus 290 R~~~va------~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~ 324 (559)
...... .... .....+.+++++.++-..++...+.
T Consensus 177 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 177 YADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp CHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 543210 0000 1126889999999999999988764
No 40
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.32 E-value=2e-05 Score=81.59 Aligned_cols=182 Identities=16% Similarity=0.176 Sum_probs=104.4
Q ss_pred CCCCccchHHHHHHHHHHcC------------CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCH
Q 043056 152 DYLPFESRMFTLRNILSALE------------DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDI 219 (559)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 219 (559)
....+.|.+...+.|.+.+. ....+.|.|+|++|+|||+||+.+++.... .-++.++...
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~------~~~~~v~~~~-- 203 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN------STFFSISSSD-- 203 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS------SEEEEECCC---
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC------CCEEEEeHHH--
Confidence 44568888888888877652 123467999999999999999999997621 1123332221
Q ss_pred HHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcccc-------------cchhcCCCCC---CCCCc
Q 043056 220 RKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENLD-------------LRVVGIPHGD---GHKDC 283 (559)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~---~~~gs 283 (559)
+.... .+. .......+.......++.+|+||+++.... ...+...+.. ...+.
T Consensus 204 --l~~~~---~g~------~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v 272 (444)
T 2zan_A 204 --LVSKW---LGE------SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 272 (444)
T ss_dssp -------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSC
T ss_pred --HHhhh---cch------HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCE
Confidence 11100 110 011233444444446789999999975410 1122222211 23456
Q ss_pred EEEEEecCcchh-cc-CCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCC-hHHHHHH
Q 043056 284 KVLLTARSLDVL-SG-KMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGL-PVSVVTI 353 (559)
Q Consensus 284 ~IivTTR~~~va-~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLai~~~ 353 (559)
.||.||...... .. .......+.+...+.++-..+|...+....... -......|++.+.|. +-.|..+
T Consensus 273 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 273 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL-TEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp EEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC-CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHH
Confidence 677777654322 10 112335788888899999999998876432111 134567888999885 4344444
No 41
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.30 E-value=2.4e-05 Score=76.38 Aligned_cols=183 Identities=14% Similarity=0.128 Sum_probs=103.3
Q ss_pred CCCCCccchHHHHHHHHHHcC------------CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcC
Q 043056 151 KDYLPFESRMFTLRNILSALE------------DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQD 218 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 218 (559)
.....++|.+..++.+.+.+. ....+.+.|+|++|+||||+|+.+++.... ..+.++.+.-..
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~-----~~~~i~~~~l~~ 92 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA-----TFLNISAASLTS 92 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC-----EEEEEESTTTSS
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-----CeEEeeHHHHhh
Confidence 345568899988888877662 123568999999999999999999987642 233444432111
Q ss_pred HHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcccc-------------cchhc---CCCCC--CC
Q 043056 219 IRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENLD-------------LRVVG---IPHGD--GH 280 (559)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~---~~~~~--~~ 280 (559)
... .........+.......++.+|+||+++.... ...+. ..++. .+
T Consensus 93 --------------~~~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 93 --------------KYV-GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp --------------SSC-SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred --------------ccc-chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 000 11112223333333345678999999965311 00111 11111 12
Q ss_pred CCcEEEEEecCcchhc-cC-CCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHHH
Q 043056 281 KDCKVLLTARSLDVLS-GK-MDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPV-SVVTIA 354 (559)
Q Consensus 281 ~gs~IivTTR~~~va~-~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~~ 354 (559)
.+..||.||....... .. ......+.+...+.++-..++...+....... ..+....+++.+.|.+- ++..+.
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPL-DTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCS-CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3456677776543210 00 01235677888888888888887764321111 13456788899999875 554443
No 42
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.28 E-value=1.2e-05 Score=80.67 Aligned_cols=182 Identities=17% Similarity=0.158 Sum_probs=103.7
Q ss_pred CCCCccchHHHHHHHHHHcC------------CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCH
Q 043056 152 DYLPFESRMFTLRNILSALE------------DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDI 219 (559)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 219 (559)
....+.|.+..++.|.+.+. ....+-|.|+|++|+|||+||+.+++..... .+.++.+
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~-----~~~v~~~----- 118 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS----- 118 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE-----EEEEEHH-----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC-----EEEeeHH-----
Confidence 34567888888888777652 1223458899999999999999999987422 2333321
Q ss_pred HHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcccc-------------cchhcCC---CCCCCCCc
Q 043056 220 RKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENLD-------------LRVVGIP---HGDGHKDC 283 (559)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~~---~~~~~~gs 283 (559)
++.. ..... .......+.......++.+|+||+++.... ...+... +.....+.
T Consensus 119 -~l~~--------~~~g~-~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 188 (355)
T 2qp9_X 119 -DLVS--------KWMGE-SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 188 (355)
T ss_dssp -HHHS--------CC----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCE
T ss_pred -HHhh--------hhcch-HHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCe
Confidence 1111 00111 122333444444446789999999975421 1112111 11123455
Q ss_pred EEEEEecCcchhc-c-CCCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCC-hHHHHHHH
Q 043056 284 KVLLTARSLDVLS-G-KMDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGL-PVSVVTIA 354 (559)
Q Consensus 284 ~IivTTR~~~va~-~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLai~~~~ 354 (559)
.||.||....... . .......+.+...+.++-.+++...+........ ......|++.+.|. +-.|..+.
T Consensus 189 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~-~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 189 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT-KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC-HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHcCCCCHHHHHHHH
Confidence 6666776543210 0 1123457889999999999999988864321111 34467889999984 44454443
No 43
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.24 E-value=4.5e-06 Score=86.31 Aligned_cols=173 Identities=15% Similarity=0.159 Sum_probs=99.8
Q ss_pred HHHHHHHcCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhh
Q 043056 163 LRNILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESG 241 (559)
Q Consensus 163 ~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~ 241 (559)
...+......+. ...+.|+|++|+||||||+.+++.......-..+++++.+ .+..++...+...
T Consensus 117 ~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~-------- 182 (440)
T 2z4s_A 117 YHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLVDSMKEG-------- 182 (440)
T ss_dssp HHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH------HHHHHHHHHHHTT--------
T ss_pred HHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHHHHHHcc--------
Confidence 344444443332 5679999999999999999999987543111235555433 3334444443211
Q ss_pred hHHHHHHHHHcCCeEEEEEeCCCcccc----cchhcCCCCC-CCCCcEEEEEecCcchh--------ccCCCCCCeeecC
Q 043056 242 RANSLFKRIKAEKKILIILDNIWENLD----LRVVGIPHGD-GHKDCKVLLTARSLDVL--------SGKMDSRPNFSIG 308 (559)
Q Consensus 242 ~~~~l~~~l~~~kr~LlVlDdv~~~~~----~~~l~~~~~~-~~~gs~IivTTR~~~va--------~~~~~~~~~~~l~ 308 (559)
....+...+. .++.+|+|||++.... .+.+...+.. ...|..||+||.+..-. .........+.++
T Consensus 183 ~~~~~~~~~~-~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~ 261 (440)
T 2z4s_A 183 KLNEFREKYR-KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLE 261 (440)
T ss_dssp CHHHHHHHHT-TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCC
T ss_pred cHHHHHHHhc-CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeC
Confidence 1122333332 2567999999975432 1222222110 13467788888763210 0001223578899
Q ss_pred CCCHHHHHHHHHHHhC--CCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 043056 309 VLNEEEAWNLFKKMAG--DYIEGSEFQSVARDVAKECAGLPVSVVTI 353 (559)
Q Consensus 309 ~L~~~ea~~Lf~~~~~--~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 353 (559)
+++.++-..++.+.+. +...+ .++...|++.++|.+-.+.-+
T Consensus 262 ~p~~e~r~~iL~~~~~~~~~~i~---~e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 262 PPDEETRKSIARKMLEIEHGELP---EEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHCCSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHH
Confidence 9999999999988764 11112 235677889999988655433
No 44
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.20 E-value=3.3e-06 Score=76.00 Aligned_cols=51 Identities=25% Similarity=0.288 Sum_probs=43.9
Q ss_pred CCCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 151 KDYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
.....++||+.+++.+.+.+.....+.+.|+|++|+|||+||+.+++....
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred cccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345668999999999999998766678899999999999999999988643
No 45
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.20 E-value=2.2e-05 Score=78.81 Aligned_cols=174 Identities=17% Similarity=0.181 Sum_probs=102.2
Q ss_pred CCCCccchHHHHHHHHHHcC-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcC
Q 043056 152 DYLPFESRMFTLRNILSALE-------------DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQD 218 (559)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 218 (559)
.+..+.|-++.+++|.+.+. -..++-|.++||+|+|||.||+.+++..... .+.++.+.-.+
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l~s 220 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK-----FIRVSGAELVQ 220 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE-----EEEEEGGGGSC
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC-----ceEEEhHHhhc
Confidence 34556677777766665442 1345678899999999999999999987643 23444332111
Q ss_pred HHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcccc----------------cchhcCCCC--CCC
Q 043056 219 IRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENLD----------------LRVVGIPHG--DGH 280 (559)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~----------------~~~l~~~~~--~~~ 280 (559)
...+ .....+..++.......+++|++|+++.... ...+...+. ...
T Consensus 221 --------------k~vG-ese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 285 (405)
T 4b4t_J 221 --------------KYIG-EGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS 285 (405)
T ss_dssp --------------SSTT-HHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC
T ss_pred --------------cccc-hHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC
Confidence 0011 1122334444444456799999999974310 111111111 233
Q ss_pred CCcEEEEEecCcchhcc-C---CCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 043056 281 KDCKVLLTARSLDVLSG-K---MDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLP 347 (559)
Q Consensus 281 ~gs~IivTTR~~~va~~-~---~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (559)
.+..||.||........ . -.-...+.++.-+.++-.++|+.+.......++.. ...|++.+.|.-
T Consensus 286 ~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd--l~~lA~~t~G~S 354 (405)
T 4b4t_J 286 KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN--LRKVAEKMNGCS 354 (405)
T ss_dssp CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC--HHHHHHHCCSCC
T ss_pred CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC--HHHHHHHCCCCC
Confidence 45567778876544311 1 12356889999999999999988876432222211 456778888864
No 46
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.19 E-value=8.2e-06 Score=85.08 Aligned_cols=151 Identities=13% Similarity=0.205 Sum_probs=87.3
Q ss_pred CCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCC----C-eEEEEEeCCCcCHHHHHHHH
Q 043056 152 DYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLF----D-QVVFVEVSQNQDIRKLQGEI 226 (559)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~-~~~wv~~s~~~~~~~~~~~i 226 (559)
...+++||+.+++.+...+......-+.++|++|+|||++|+.+++........ + ..+.++++..
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~---------- 247 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTK---------- 247 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCcc----------
Confidence 456799999999999999875555667899999999999999999986432111 1 1222332200
Q ss_pred HHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcccccchhcCCCCCCCCCcEEEEEecCcc------hhccCCC
Q 043056 227 ADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENLDLRVVGIPHGDGHKDCKVLLTARSLD------VLSGKMD 300 (559)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~------va~~~~~ 300 (559)
..+ ........+...+...++.+|++| -.......+...+. ....++|.+|.... .......
T Consensus 248 -------~~g-~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~ 315 (468)
T 3pxg_A 248 -------YRG-EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALER 315 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred -------ccc-hHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHH
Confidence 000 011233445555555667899999 22222222333332 22355666555433 1111112
Q ss_pred CCCeeecCCCCHHHHHHHHHHHhC
Q 043056 301 SRPNFSIGVLNEEEAWNLFKKMAG 324 (559)
Q Consensus 301 ~~~~~~l~~L~~~ea~~Lf~~~~~ 324 (559)
....+.+++.+.++...++.....
T Consensus 316 Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 316 RFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp SEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hCccceeCCCCHHHHHHHHHHHHH
Confidence 234799999999999999997664
No 47
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.18 E-value=3.5e-05 Score=75.38 Aligned_cols=176 Identities=13% Similarity=0.155 Sum_probs=100.3
Q ss_pred CCCCccchHHHHHHHHHHcC-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcC
Q 043056 152 DYLPFESRMFTLRNILSALE-------------DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQD 218 (559)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 218 (559)
....+.|.+..++.|.+++. -...+.+.|+|++|+|||+||+.+++.... ..+.++
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~-----~~i~v~------ 81 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISIK------ 81 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----EEEEEC------
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC-----CEEEEE------
Confidence 34557787777776665543 134567999999999999999999987642 122222
Q ss_pred HHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcccc----------------cchhcCCCC--CCC
Q 043056 219 IRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENLD----------------LRVVGIPHG--DGH 280 (559)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~----------------~~~l~~~~~--~~~ 280 (559)
..++.... .+.. ......+........+.+|+||+++.... ...+...+. ...
T Consensus 82 ~~~l~~~~---~g~~------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 152 (301)
T 3cf0_A 82 GPELLTMW---FGES------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 152 (301)
T ss_dssp HHHHHHHH---HTTC------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT
T ss_pred hHHHHhhh---cCch------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC
Confidence 22232221 1211 12233444444445689999999974210 111211111 123
Q ss_pred CCcEEEEEecCcchh-ccCC---CCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHH
Q 043056 281 KDCKVLLTARSLDVL-SGKM---DSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVS 349 (559)
Q Consensus 281 ~gs~IivTTR~~~va-~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa 349 (559)
.+..||.||...... .... .....+.+...+.++-.++++..+.......+. -...++..+.|.|-+
T Consensus 153 ~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~--~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 153 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV--DLEFLAKMTNGFSGA 223 (301)
T ss_dssp SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSC--CHHHHHHTCSSCCHH
T ss_pred CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccc--hHHHHHHHcCCCCHH
Confidence 456777777655322 1111 123578999999999999998887532211111 134566677787654
No 48
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.15 E-value=4.9e-05 Score=77.47 Aligned_cols=173 Identities=20% Similarity=0.246 Sum_probs=100.2
Q ss_pred CCCccchHHHHHHHHHHcC-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCH
Q 043056 153 YLPFESRMFTLRNILSALE-------------DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDI 219 (559)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 219 (559)
+..+.|-++.++.|.+.+. -..++-|.++||+|+|||+||+.+++..... .+.++.+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s~l~s- 253 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPASGIVD- 253 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGTCC-
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehhhhcc-
Confidence 4456677776666655442 1345789999999999999999999987643 33444332111
Q ss_pred HHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcccc----------------cchhcCCC--CCCCC
Q 043056 220 RKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENLD----------------LRVVGIPH--GDGHK 281 (559)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~----------------~~~l~~~~--~~~~~ 281 (559)
... ......+..+........+++|++|+++.... +..+...+ .....
T Consensus 254 -------------k~~-Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 254 -------------KYI-GESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp -------------SSS-SHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred -------------ccc-hHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 001 11112233444444456799999999974310 11121111 12334
Q ss_pred CcEEEEEecCcchhcc-CCCC---CCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 043056 282 DCKVLLTARSLDVLSG-KMDS---RPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLP 347 (559)
Q Consensus 282 gs~IivTTR~~~va~~-~~~~---~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (559)
+..||.||........ .... ...+.++.-+.++-.++|+.++......++.. ...|++.+.|.-
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d--l~~lA~~t~G~s 387 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD--FEAAVKMSDGFN 387 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC--HHHHHHTCCSCC
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC--HHHHHHhCCCCC
Confidence 5678888876554321 2222 34788888888888889887775322222111 356777888764
No 49
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.08 E-value=1.3e-05 Score=90.04 Aligned_cols=159 Identities=12% Similarity=0.197 Sum_probs=89.2
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCC-----CCeEEEEEeCCCcCHHHHHH
Q 043056 150 NKDYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKL-----FDQVVFVEVSQNQDIRKLQG 224 (559)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~s~~~~~~~~~~ 224 (559)
+....+++||+.+++.++..+.......+.++|++|+|||++|+.+++....... -..+++++++.-..
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------ 239 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------ 239 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------
T ss_pred cCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc------
Confidence 3456779999999999999887655566889999999999999999998643211 11244443322110
Q ss_pred HHHHHhCCCCcCCChhhhHHHHHHHHHc-CCeEEEEEeCCCcccc-------cc---hhcCCCCCCCCCcEEEEEecCcc
Q 043056 225 EIADKLGLKFHEESESGRANSLFKRIKA-EKKILIILDNIWENLD-------LR---VVGIPHGDGHKDCKVLLTARSLD 293 (559)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~-------~~---~l~~~~~~~~~gs~IivTTR~~~ 293 (559)
+... ..........+...+.. +++.+|++|+++.... ++ .+...+ . ..+..+|.+|....
T Consensus 240 ------g~~~-~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l-~-~~~i~~I~at~~~~ 310 (854)
T 1qvr_A 240 ------GAKY-RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL-A-RGELRLIGATTLDE 310 (854)
T ss_dssp -------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH-H-TTCCCEEEEECHHH
T ss_pred ------cCcc-chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH-h-CCCeEEEEecCchH
Confidence 0000 01112233444445443 4689999999975420 11 111111 1 12344555554322
Q ss_pred h-----hccCCCCCCeeecCCCCHHHHHHHHHHHh
Q 043056 294 V-----LSGKMDSRPNFSIGVLNEEEAWNLFKKMA 323 (559)
Q Consensus 294 v-----a~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 323 (559)
. ..........+.+++++.++..+++....
T Consensus 311 ~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 311 YREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred HhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 1 11122333468999999999999997544
No 50
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.08 E-value=4.3e-05 Score=77.87 Aligned_cols=174 Identities=14% Similarity=0.165 Sum_probs=99.5
Q ss_pred CCCCccchHHHHHHHHHHcC-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcC
Q 043056 152 DYLPFESRMFTLRNILSALE-------------DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQD 218 (559)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 218 (559)
.+..+.|-++.++.|.+.+. -..++-|.++||+|+|||.||+.+++..... .+.++.+.-.+
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l~~ 253 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT-----FLKLAAPQLVQ 253 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGCS
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC-----EEEEehhhhhh
Confidence 35567788887777766542 1346789999999999999999999987642 33344332110
Q ss_pred HHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc-------c---------cchhcCCCC--CCC
Q 043056 219 IRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL-------D---------LRVVGIPHG--DGH 280 (559)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~-------~---------~~~l~~~~~--~~~ 280 (559)
...+ .....+..+........+++|++|+++... . ...+...+. ...
T Consensus 254 --------------~~vG-ese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~ 318 (434)
T 4b4t_M 254 --------------MYIG-EGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD 318 (434)
T ss_dssp --------------SCSS-HHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS
T ss_pred --------------cccc-hHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC
Confidence 0111 111223334444344568999999985320 0 111211111 123
Q ss_pred CCcEEEEEecCcchhccC-CC---CCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 043056 281 KDCKVLLTARSLDVLSGK-MD---SRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLP 347 (559)
Q Consensus 281 ~gs~IivTTR~~~va~~~-~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (559)
.+..||.||......... .. -...+.++.-+.++-.++|+.++......++.. ...|++.+.|.-
T Consensus 319 ~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd--l~~lA~~t~G~s 387 (434)
T 4b4t_M 319 DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN--WQELARSTDEFN 387 (434)
T ss_dssp CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC--HHHHHHHCSSCC
T ss_pred CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC--HHHHHHhCCCCC
Confidence 355677788765543212 22 234788888888888888887764222112111 356778888754
No 51
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.06 E-value=0.00011 Score=74.90 Aligned_cols=173 Identities=16% Similarity=0.177 Sum_probs=100.8
Q ss_pred CCCccchHHHHHHHHHHcC-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCH
Q 043056 153 YLPFESRMFTLRNILSALE-------------DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDI 219 (559)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 219 (559)
+..+.|-++.+++|.+.+. -..++-|.++|++|+|||+||+.+++..... .+.++.+.-.+
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~-----fi~vs~s~L~s- 281 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT-----FIRVIGSELVQ- 281 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGCC-
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC-----eEEEEhHHhhc-
Confidence 4456777777777665442 2356788999999999999999999987643 23343332110
Q ss_pred HHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcccc----------------cchhcCCC--CCCCC
Q 043056 220 RKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENLD----------------LRVVGIPH--GDGHK 281 (559)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~----------------~~~l~~~~--~~~~~ 281 (559)
...+ .....+..++.......+++|++|+++.... ...+...+ .....
T Consensus 282 -------------k~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 282 -------------KYVG-EGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp -------------CSSS-HHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred -------------ccCC-HHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 0011 1112333444444456799999999974310 01111111 12233
Q ss_pred CcEEEEEecCcchhc-cCC---CCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 043056 282 DCKVLLTARSLDVLS-GKM---DSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLP 347 (559)
Q Consensus 282 gs~IivTTR~~~va~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (559)
+..||.||....... ... .-...+.+..-+.++-.++|+.++.......+.. ...|++.|.|.-
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd--l~~LA~~T~GfS 415 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR--WELISRLCPNST 415 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC--HHHHHHHCCSCC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC--HHHHHHHCCCCC
Confidence 556677776544321 111 2356888888899999999988876432222211 356778888864
No 52
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.05 E-value=1.3e-05 Score=79.40 Aligned_cols=166 Identities=15% Similarity=0.135 Sum_probs=92.8
Q ss_pred HHHHHHHcCCC--CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChh
Q 043056 163 LRNILSALEDP--DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESES 240 (559)
Q Consensus 163 ~~~l~~~L~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~ 240 (559)
...+..++..+ ....+.|+|++|+||||||+.+++..... -..+++++. ..+...+...+..
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~------~~~~~~~~~~~~~-------- 86 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSA------DDFAQAMVEHLKK-------- 86 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEH------HHHHHHHHHHHHH--------
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEH------HHHHHHHHHHHHc--------
Confidence 44444444333 34678999999999999999999987543 113455543 2333333333311
Q ss_pred hhHHHHHHHHHcCCeEEEEEeCCCcccc---c-chhcCCCCC-CCCCcEEEEEecCcchh-----c---cCCCCCCeeec
Q 043056 241 GRANSLFKRIKAEKKILIILDNIWENLD---L-RVVGIPHGD-GHKDCKVLLTARSLDVL-----S---GKMDSRPNFSI 307 (559)
Q Consensus 241 ~~~~~l~~~l~~~kr~LlVlDdv~~~~~---~-~~l~~~~~~-~~~gs~IivTTR~~~va-----~---~~~~~~~~~~l 307 (559)
.....+...+. ++.+|+|||++.... + ..+...+.. ...+..||+||.+..-. . ........+.+
T Consensus 87 ~~~~~~~~~~~--~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l 164 (324)
T 1l8q_A 87 GTINEFRNMYK--SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEI 164 (324)
T ss_dssp TCHHHHHHHHH--TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEEC
T ss_pred CcHHHHHHHhc--CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEe
Confidence 01122233333 367999999976431 1 122111110 12355788888643210 0 00122257899
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHH
Q 043056 308 GVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVS 349 (559)
Q Consensus 308 ~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa 349 (559)
.+ +.++...++...+...... --.+....|++.+ |.+-.
T Consensus 165 ~~-~~~e~~~il~~~~~~~~~~-l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 165 EL-DNKTRFKIIKEKLKEFNLE-LRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp CC-CHHHHHHHHHHHHHHTTCC-CCHHHHHHHHHHC-SSHHH
T ss_pred CC-CHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHhC-CCHHH
Confidence 99 9999999998887421111 1145677888888 77643
No 53
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.02 E-value=0.00018 Score=72.50 Aligned_cols=174 Identities=14% Similarity=0.143 Sum_probs=99.7
Q ss_pred CCCCccchHHHHHHHHHHcC-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcC
Q 043056 152 DYLPFESRMFTLRNILSALE-------------DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQD 218 (559)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 218 (559)
.+..+-|-++.+++|.+.+. -..++-|.++||+|+|||.||+.+++..... .+.++.+.-.
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~-----fi~v~~s~l~- 253 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT-----FLRIVGSELI- 253 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE-----EEEEESGGGC-
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC-----EEEEEHHHhh-
Confidence 34556677776666655432 1345789999999999999999999987643 2333332211
Q ss_pred HHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcccc----------------cchhcCCC--CCCC
Q 043056 219 IRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENLD----------------LRVVGIPH--GDGH 280 (559)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~----------------~~~l~~~~--~~~~ 280 (559)
.... ......+..++.......+++|++|+++.... ...+...+ ....
T Consensus 254 -------------sk~v-Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~ 319 (437)
T 4b4t_I 254 -------------QKYL-GDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR 319 (437)
T ss_dssp -------------CSSS-SHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS
T ss_pred -------------hccC-chHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC
Confidence 0011 11122334444444456789999999864310 11111111 1233
Q ss_pred CCcEEEEEecCcchhcc-CCC---CCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 043056 281 KDCKVLLTARSLDVLSG-KMD---SRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLP 347 (559)
Q Consensus 281 ~gs~IivTTR~~~va~~-~~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (559)
.+..||.||........ ... -...+.+..-+.++-.++|+.++......++.. ...|++.+.|.-
T Consensus 320 ~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd--l~~LA~~T~GfS 388 (437)
T 4b4t_I 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN--LETLVTTKDDLS 388 (437)
T ss_dssp SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC--HHHHHHHCCSCC
T ss_pred CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC--HHHHHHhCCCCC
Confidence 45667778876554421 222 234678888888888899988876432222111 356777887764
No 54
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.94 E-value=2.8e-05 Score=76.01 Aligned_cols=144 Identities=16% Similarity=0.065 Sum_probs=89.0
Q ss_pred HHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCeEEEEEeCC-CcCHHHHHHHHHHHhCCCCcC
Q 043056 160 MFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSD--KLFDQVVFVEVSQ-NQDIRKLQGEIADKLGLKFHE 236 (559)
Q Consensus 160 ~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~ 236 (559)
++.++.|...+..++.+...++|+.|+||||+|..+.+..... .+.+. .+++.+. ...+.+ .+++.+.+...+.
T Consensus 3 ~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~-ir~li~~~~~~p~- 79 (305)
T 2gno_A 3 KDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDD-IRTIKDFLNYSPE- 79 (305)
T ss_dssp -CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHH-HHHHHHHHTSCCS-
T ss_pred HHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHH-HHHHHHHHhhccc-
Confidence 3455666666666667899999999999999999998753211 23343 4555443 333333 2334444432110
Q ss_pred CChhhhHHHHHHHHHcCCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEEEecCc-chhccCCCCCCeeecCCCCHH
Q 043056 237 ESESGRANSLFKRIKAEKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLLTARSL-DVLSGKMDSRPNFSIGVLNEE 313 (559)
Q Consensus 237 ~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~-~va~~~~~~~~~~~l~~L~~~ 313 (559)
.+++-++|+|+++.. ...+.+...+....+.+.+|++|.+. .+...... . .+++.+++++
T Consensus 80 ---------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~S-R-~~~f~~l~~~ 142 (305)
T 2gno_A 80 ---------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKS-R-VFRVVVNVPK 142 (305)
T ss_dssp ---------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHT-T-SEEEECCCCH
T ss_pred ---------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHc-e-eEeCCCCCHH
Confidence 145678999999764 23444544443344567777776554 33221222 2 9999999999
Q ss_pred HHHHHHHHHh
Q 043056 314 EAWNLFKKMA 323 (559)
Q Consensus 314 ea~~Lf~~~~ 323 (559)
+..+.+.+..
T Consensus 143 ~i~~~L~~~~ 152 (305)
T 2gno_A 143 EFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998877
No 55
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.93 E-value=0.0001 Score=81.87 Aligned_cols=159 Identities=16% Similarity=0.193 Sum_probs=93.5
Q ss_pred CCCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCC----CCeEEE-EEeCCCcCHHHHHHH
Q 043056 151 KDYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKL----FDQVVF-VEVSQNQDIRKLQGE 225 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~w-v~~s~~~~~~~~~~~ 225 (559)
....+++||+.+++.+.+.|......-+.|+|++|+|||++|+.+++....... ....+| ++.+.-
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l--------- 253 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL--------- 253 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-----------
T ss_pred CCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH---------
Confidence 345678999999999999998666677899999999999999999987643211 123332 211110
Q ss_pred HHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc--------cc--chhcCCCCCCCCCcEEEEEecCcchh
Q 043056 226 IADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL--------DL--RVVGIPHGDGHKDCKVLLTARSLDVL 295 (559)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--------~~--~~l~~~~~~~~~gs~IivTTR~~~va 295 (559)
+...............+.+.+...++.+|++|+++... .. ..+..++.. ..+..+|.+|......
T Consensus 254 ----~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~~~~~ 328 (758)
T 1r6b_X 254 ----LAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFS 328 (758)
T ss_dssp -----CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHHHHH
T ss_pred ----hccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCchHHh
Confidence 00000111122234445555554567999999997541 11 112222222 2345666666543211
Q ss_pred ------ccCCCCCCeeecCCCCHHHHHHHHHHHh
Q 043056 296 ------SGKMDSRPNFSIGVLNEEEAWNLFKKMA 323 (559)
Q Consensus 296 ------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 323 (559)
.........+.+.+.+.++..+++....
T Consensus 329 ~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 329 NIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 0011122368899999999999887654
No 56
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.92 E-value=0.00012 Score=69.76 Aligned_cols=178 Identities=16% Similarity=0.177 Sum_probs=93.6
Q ss_pred CCCCccchHHHHHHHHH---HcCC---------CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCH
Q 043056 152 DYLPFESRMFTLRNILS---ALED---------PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDI 219 (559)
Q Consensus 152 ~~~~~~gR~~~~~~l~~---~L~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 219 (559)
....++|.+...+.+.+ ++.. ...+-+.|+|++|+||||||+.+++..... .+.++.+.-.+
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~-----~~~i~~~~~~~- 83 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP-----FFTISGSDFVE- 83 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC-----EEEECSCSSTT-
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC-----EEEEeHHHHHH-
Confidence 34557777766655443 3321 123458899999999999999999876421 23333221110
Q ss_pred HHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcccc----------------cchhcCCCC--CCCC
Q 043056 220 RKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENLD----------------LRVVGIPHG--DGHK 281 (559)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~----------------~~~l~~~~~--~~~~ 281 (559)
..... .......+.+......+.++++|+++.... ...+...+. ....
T Consensus 84 -------------~~~~~-~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (257)
T 1lv7_A 84 -------------MFVGV-GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149 (257)
T ss_dssp -------------SCCCC-CHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSS
T ss_pred -------------Hhhhh-hHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCC
Confidence 00011 112233444444445678999999843210 111111110 1233
Q ss_pred CcEEEEEecCcchh-ccCC---CCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCC-ChHHHH
Q 043056 282 DCKVLLTARSLDVL-SGKM---DSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAG-LPVSVV 351 (559)
Q Consensus 282 gs~IivTTR~~~va-~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~G-lPLai~ 351 (559)
+..||.||...... .... .....+.+...+.++-.++++.........++. ....++..+.| .+--|.
T Consensus 150 ~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~--~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI--DAAIIARGTPGFSGADLA 222 (257)
T ss_dssp CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCCHHHHH
T ss_pred CEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc--cHHHHHHHcCCCCHHHHH
Confidence 45677777654322 1111 123477888888888888888776532211211 13456677777 554443
No 57
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.91 E-value=5.1e-06 Score=71.81 Aligned_cols=46 Identities=15% Similarity=0.115 Sum_probs=34.0
Q ss_pred CccchHHHHHHHHHHcC--CCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 155 PFESRMFTLRNILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 155 ~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.++|+...+.++.+.+. .....-|.|+|++|+|||++|+.+++...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 36788888887777664 22334578999999999999999998653
No 58
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.89 E-value=0.00025 Score=72.16 Aligned_cols=174 Identities=19% Similarity=0.214 Sum_probs=94.5
Q ss_pred CCCCccchHHHHHHHHHHcC-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcC
Q 043056 152 DYLPFESRMFTLRNILSALE-------------DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQD 218 (559)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 218 (559)
.+..+.|-+..++.|.+.+. -..++-|.++||+|+|||+||+.+++..... .+.++.+.-.+
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~-----~~~v~~~~l~~ 244 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA-----FIRVNGSEFVH 244 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE-----EEEEEGGGTCC
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eEEEecchhhc
Confidence 34556777777776666442 1345678999999999999999999987642 33444332111
Q ss_pred HHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc--------c--------cchhcCCCC--CCC
Q 043056 219 IRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL--------D--------LRVVGIPHG--DGH 280 (559)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--------~--------~~~l~~~~~--~~~ 280 (559)
... ......+..++.......++++++|+++... . ...+...+. ...
T Consensus 245 --------------~~~-Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~ 309 (428)
T 4b4t_K 245 --------------KYL-GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS 309 (428)
T ss_dssp --------------SSC-SHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS
T ss_pred --------------ccc-chhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC
Confidence 000 1112233344444445678999999985320 0 111111111 233
Q ss_pred CCcEEEEEecCcchhc-cCCC---CCCeeecCCCCH-HHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 043056 281 KDCKVLLTARSLDVLS-GKMD---SRPNFSIGVLNE-EEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLP 347 (559)
Q Consensus 281 ~gs~IivTTR~~~va~-~~~~---~~~~~~l~~L~~-~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (559)
.+..||.||....... .... -...+.+.+++. ++-..+|+.+.......++. -...|++.+.|.-
T Consensus 310 ~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~--dl~~lA~~t~G~s 379 (428)
T 4b4t_K 310 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEA--DLDSLIIRNDSLS 379 (428)
T ss_dssp CSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTC--CHHHHHHHTTTCC
T ss_pred CCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCccc--CHHHHHHHCCCCC
Confidence 4566777887654321 1111 224677766654 44556666665432211111 1356777888764
No 59
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.88 E-value=1e-05 Score=72.71 Aligned_cols=117 Identities=16% Similarity=0.137 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHcC---CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCc
Q 043056 159 RMFTLRNILSALE---DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFH 235 (559)
Q Consensus 159 R~~~~~~l~~~L~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 235 (559)
....++.+.+++. ......+.|+|++|+|||||++.+++.......+. ++++ +..++...+.........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~------~~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFF------DTKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEE------EHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEE------EHHHHHHHHHHHhcCchH
Confidence 4444555554443 23346899999999999999999998875322222 2333 344555554443321110
Q ss_pred CCChhhhHHHHHHHHHcCCeEEEEEeCCCc--ccccch--hcCCCCC-CCCCcEEEEEecCc
Q 043056 236 EESESGRANSLFKRIKAEKKILIILDNIWE--NLDLRV--VGIPHGD-GHKDCKVLLTARSL 292 (559)
Q Consensus 236 ~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~--~~~~~~--l~~~~~~-~~~gs~IivTTR~~ 292 (559)
. .+...+. +.-+|||||++. ...|.. +...+.. ...|..+|+||...
T Consensus 92 ----~----~~~~~~~--~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 92 ----T----KFLKTVL--NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp ----S----HHHHHHH--TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred ----H----HHHHHhc--CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 0 2333333 457999999973 233321 1111111 12466788888643
No 60
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.88 E-value=4.4e-05 Score=84.70 Aligned_cols=152 Identities=14% Similarity=0.220 Sum_probs=87.9
Q ss_pred CCCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCC-C---Ce-EEEEEeCCCcCHHHHHHH
Q 043056 151 KDYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKL-F---DQ-VVFVEVSQNQDIRKLQGE 225 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-f---~~-~~wv~~s~~~~~~~~~~~ 225 (559)
....+++||+.+++.+...+......-+.++|++|+|||++|+.+++....... + .+ .+.++.
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~------------ 244 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM------------ 244 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--------------
T ss_pred CCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc------------
Confidence 345679999999999999987655566889999999999999999998632111 1 11 122221
Q ss_pred HHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcccccchhcCCCCCCCCCcEEEEEecCcc------hhccCC
Q 043056 226 IADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENLDLRVVGIPHGDGHKDCKVLLTARSLD------VLSGKM 299 (559)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~------va~~~~ 299 (559)
+....+ ........+.......++.+|++| ........+...+. ....++|.||.... +.....
T Consensus 245 -----g~~~~G-~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~ 314 (758)
T 3pxi_A 245 -----GTKYRG-EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALE 314 (758)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred -----cccccc-hHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHH
Confidence 001011 111233445555555678999999 22222222333332 23456666665443 101011
Q ss_pred CCCCeeecCCCCHHHHHHHHHHHhC
Q 043056 300 DSRPNFSIGVLNEEEAWNLFKKMAG 324 (559)
Q Consensus 300 ~~~~~~~l~~L~~~ea~~Lf~~~~~ 324 (559)
.....+.+++.+.++..+++.....
T Consensus 315 rRf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 315 RRFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hhCcEEEeCCCCHHHHHHHHHHHHH
Confidence 1225799999999999999997654
No 61
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.85 E-value=0.0012 Score=65.39 Aligned_cols=174 Identities=17% Similarity=0.131 Sum_probs=92.8
Q ss_pred CCCCCccchHHHHHHHHHHcC-----CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHH
Q 043056 151 KDYLPFESRMFTLRNILSALE-----DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGE 225 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 225 (559)
.....++|.+..++.+...+. ......+.++|++|+||||||+.++...... | ...+.+-.....+
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~--~---~~~sg~~~~~~~~---- 92 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN--I---HVTSGPVLVKQGD---- 92 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC--E---EEEETTTCCSHHH----
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEechHhcCHHH----
Confidence 344557788777777655553 2234679999999999999999999986432 1 1111111111111
Q ss_pred HHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc--ccchhcCCCCC--------CC----------CCcEE
Q 043056 226 IADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL--DLRVVGIPHGD--------GH----------KDCKV 285 (559)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~--------~~----------~gs~I 285 (559)
...+...+ .++.++++|++.... ..+.+...+.. .. +...+
T Consensus 93 -----------------l~~~~~~~--~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 93 -----------------MAAILTSL--ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp -----------------HHHHHHHC--CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred -----------------HHHHHHHc--cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 11111111 234577788875431 11111100000 00 11223
Q ss_pred E-EEecCcchhccC-CCCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 043056 286 L-LTARSLDVLSGK-MDSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPVSVVTI 353 (559)
Q Consensus 286 i-vTTR~~~va~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 353 (559)
+ .|++...+.... ......+.+++.+.++-.+++.+.+..... .-..+.+..|++.++|.|-.+..+
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~-~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV-EIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHhcCCChHHHHHH
Confidence 3 234333221111 112236889999999999999887642111 122466889999999999655443
No 62
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.83 E-value=0.0002 Score=74.17 Aligned_cols=173 Identities=16% Similarity=0.189 Sum_probs=96.1
Q ss_pred CCCccchHHHHHHHHH---HcCC---------CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHH
Q 043056 153 YLPFESRMFTLRNILS---ALED---------PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIR 220 (559)
Q Consensus 153 ~~~~~gR~~~~~~l~~---~L~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 220 (559)
...+.|.++.++++.+ .+.. .-++-|.|+|++|+|||+||+.+++..... .+.++.+.-...
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~-----f~~is~~~~~~~- 88 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP-----FFHISGSDFVEL- 88 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC-----EEEEEGGGTTTC-
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC-----eeeCCHHHHHHH-
Confidence 4457777766555444 3322 123458899999999999999999876432 233443322110
Q ss_pred HHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc----------------ccchhcCCCC--CCCCC
Q 043056 221 KLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL----------------DLRVVGIPHG--DGHKD 282 (559)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~----------------~~~~l~~~~~--~~~~g 282 (559)
... ........++.......+.+|+||+++... ....+...+. ....+
T Consensus 89 -------------~~g-~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 89 -------------FVG-VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp -------------CTT-HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred -------------Hhc-ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 000 011223334444444678999999996431 1112221111 12245
Q ss_pred cEEEEEecCcchhc-cCC---CCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 043056 283 CKVLLTARSLDVLS-GKM---DSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLP 347 (559)
Q Consensus 283 s~IivTTR~~~va~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (559)
..||.||....... ... .....+.+++.+.++-.++++.++......++. + ...|++.+.|+.
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v-~-l~~la~~t~G~s 221 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV-N-LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC-C-HHHHHHTCTTCC
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh-h-HHHHHHhcCCCc
Confidence 66777777654331 111 123478888888888888888777533222211 1 345788888877
No 63
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.77 E-value=2.7e-05 Score=71.21 Aligned_cols=115 Identities=18% Similarity=0.134 Sum_probs=62.5
Q ss_pred HHHHHHHHHHcCCC----CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCc
Q 043056 160 MFTLRNILSALEDP----DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFH 235 (559)
Q Consensus 160 ~~~~~~l~~~L~~~----~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 235 (559)
...++.+.+++... ....+.|+|++|+|||+||+.+++..... ...++|++++ .+...+......
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~--- 103 (202)
T 2w58_A 35 IKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYVP------ELFRELKHSLQD--- 103 (202)
T ss_dssp HHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEHH------HHHHHHHHC------
T ss_pred HHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEhH------HHHHHHHHHhcc---
Confidence 33455555555422 22689999999999999999999987643 3345666542 344444332211
Q ss_pred CCChhhhHHHHHHHHHcCCeEEEEEeCCCcc--cccch--hcC-CCCCC-CCCcEEEEEecCc
Q 043056 236 EESESGRANSLFKRIKAEKKILIILDNIWEN--LDLRV--VGI-PHGDG-HKDCKVLLTARSL 292 (559)
Q Consensus 236 ~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~--l~~-~~~~~-~~gs~IivTTR~~ 292 (559)
.. ...+...+.. .-+|||||++.. ..|.. +.. .+... ..+.++|+||...
T Consensus 104 -~~----~~~~~~~~~~--~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 104 -QT----MNEKLDYIKK--VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp -CC----CHHHHHHHHH--SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred -ch----HHHHHHHhcC--CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 11 1223334432 249999999543 33332 211 11111 2355788888743
No 64
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.75 E-value=0.00024 Score=74.00 Aligned_cols=180 Identities=14% Similarity=0.173 Sum_probs=101.1
Q ss_pred CCCCccchHHHHHHHHHHcC-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcC
Q 043056 152 DYLPFESRMFTLRNILSALE-------------DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQD 218 (559)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 218 (559)
....+.|.+..+++|.+++. ....+-|.|+|++|+|||++|+.+++.... ..+.++.+
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~-----~fv~vn~~---- 272 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGP---- 272 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS-----EEEEEEHH----
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC-----CEEEEEch----
Confidence 34568898888888777653 234467899999999999999999887532 23334321
Q ss_pred HHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcccc-------------cchhcCCCC--CCCCCc
Q 043056 219 IRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENLD-------------LRVVGIPHG--DGHKDC 283 (559)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~~~~--~~~~gs 283 (559)
. +.. .... ........++.....+++.+|+||+++.... ...+...+. ....+.
T Consensus 273 --~----l~~----~~~g-~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v 341 (489)
T 3hu3_A 273 --E----IMS----KLAG-ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (489)
T ss_dssp --H----HHT----SCTT-HHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCE
T ss_pred --H----hhh----hhcc-hhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCce
Confidence 1 110 0000 1111223344444446789999999942210 111111111 123345
Q ss_pred EEEEEecCcchh-ccCC---CCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCC-hHHHHHH
Q 043056 284 KVLLTARSLDVL-SGKM---DSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGL-PVSVVTI 353 (559)
Q Consensus 284 ~IivTTR~~~va-~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLai~~~ 353 (559)
.||.||...... .... .....+.+...+.++-.+++..++.......+ ....++++.+.|. +-.+..+
T Consensus 342 ~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~--~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD--VDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT--CCHHHHHHTCTTCCHHHHHHH
T ss_pred EEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch--hhHHHHHHHccCCcHHHHHHH
Confidence 666677654321 1111 22347899999999999999988763322111 1135567777775 4334433
No 65
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.71 E-value=0.00011 Score=72.04 Aligned_cols=104 Identities=14% Similarity=0.201 Sum_probs=58.3
Q ss_pred ccchHHHHHHHHHHcCC---------CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHH
Q 043056 156 FESRMFTLRNILSALED---------PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEI 226 (559)
Q Consensus 156 ~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 226 (559)
++|....++.+...+.. .....+.++|++|+|||++|+.++...... -...+.++++...... ...
T Consensus 19 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~-~~~-- 93 (311)
T 4fcw_A 19 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKH-AVS-- 93 (311)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTT-HHH--
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeecccccccc-cHH--
Confidence 66777777777666541 123589999999999999999999976432 1224555554332211 111
Q ss_pred HHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcc
Q 043056 227 ADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWEN 266 (559)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 266 (559)
..++....... ......+...+......+|+||+++..
T Consensus 94 -~l~g~~~~~~~-~~~~~~~~~~~~~~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 94 -RLIGAPPGYVG-YEEGGQLTEAVRRRPYSVILFDAIEKA 131 (311)
T ss_dssp -HHHCCCTTSTT-TTTCCHHHHHHHHCSSEEEEEETGGGS
T ss_pred -HhcCCCCcccc-ccccchHHHHHHhCCCeEEEEeChhhc
Confidence 11222211111 000012333343345579999999754
No 66
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.71 E-value=2.7e-05 Score=74.74 Aligned_cols=129 Identities=19% Similarity=0.152 Sum_probs=68.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCe
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKK 255 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 255 (559)
+-+.|+|++|+|||+||+.+++..... |- .++.+.-.+ .+ ..... .....+.......++
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~~~~--~~---~v~~~~~~~----------~~----~~~~~-~~~~~~~~~a~~~~~ 104 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEAHVP--FF---SMGGSSFIE----------MF----VGLGA-SRVRDLFETAKKQAP 104 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHHTCC--CC---CCCSCTTTT----------SC----SSSCS-SSSSTTHHHHHHSCS
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCC--EE---EechHHHHH----------hh----cchHH-HHHHHHHHHHHhcCC
Confidence 347899999999999999999876532 21 111111000 00 00000 011122223333457
Q ss_pred EEEEEeCCCccc-----------------ccchhcCCCCC---CCCCcEEEEEecCcchhc-cCC---CCCCeeecCCCC
Q 043056 256 ILIILDNIWENL-----------------DLRVVGIPHGD---GHKDCKVLLTARSLDVLS-GKM---DSRPNFSIGVLN 311 (559)
Q Consensus 256 ~LlVlDdv~~~~-----------------~~~~l~~~~~~---~~~gs~IivTTR~~~va~-~~~---~~~~~~~l~~L~ 311 (559)
.+|+||+++... ....+...+.. ......||.||....... ... .....+.+.+.+
T Consensus 105 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~ 184 (268)
T 2r62_A 105 SIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPD 184 (268)
T ss_dssp CEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCC
T ss_pred eEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcC
Confidence 899999995431 12223222221 112345677776543211 111 123568888889
Q ss_pred HHHHHHHHHHHhC
Q 043056 312 EEEAWNLFKKMAG 324 (559)
Q Consensus 312 ~~ea~~Lf~~~~~ 324 (559)
.++-.+++...+.
T Consensus 185 ~~~r~~il~~~~~ 197 (268)
T 2r62_A 185 FNGRVEILKVHIK 197 (268)
T ss_dssp TTTHHHHHHHHTS
T ss_pred HHHHHHHHHHHHh
Confidence 9998888887765
No 67
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.64 E-value=0.00021 Score=69.84 Aligned_cols=46 Identities=22% Similarity=0.262 Sum_probs=35.9
Q ss_pred CccchHHHHHHHHHHcCC--------------CCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 155 PFESRMFTLRNILSALED--------------PDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 155 ~~~gR~~~~~~l~~~L~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.++|.+..++.+...+.. .....+.++|++|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 377888888877766532 2345688999999999999999998763
No 68
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.54 E-value=0.00046 Score=71.61 Aligned_cols=48 Identities=17% Similarity=0.088 Sum_probs=35.8
Q ss_pred CCCccchHHHHHHHHH---HcCCC--CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 153 YLPFESRMFTLRNILS---ALEDP--DVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 153 ~~~~~gR~~~~~~l~~---~L~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
...++|.+..++.+.. ++..+ ..+-+.++|++|+|||+||+.+++...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 3568888887665443 33322 235788999999999999999998865
No 69
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.44 E-value=0.00073 Score=74.07 Aligned_cols=153 Identities=13% Similarity=0.180 Sum_probs=86.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcC
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAE 253 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (559)
.++-|.++|++|+|||+||+.+++..... .+.++.+. + .. ... ......+..+.+.....
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg~~-----~~~v~~~~------l----~s----k~~-gese~~lr~lF~~A~~~ 296 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGPE------I----MS----KLA-GESESNLRKAFEEAEKN 296 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTTCE-----EEEEEHHH------H----HS----SCT-THHHHHHHHHHHHHTTS
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCe-----EEEEEhHH------h----hc----ccc-hHHHHHHHHHHHHHHHc
Confidence 45789999999999999999999876532 33443221 1 10 001 11122334444544556
Q ss_pred CeEEEEEeCCCcccc-------------cchhcCCCC--CCCCCcEEEEEecCcchhccCC----CCCCeeecCCCCHHH
Q 043056 254 KKILIILDNIWENLD-------------LRVVGIPHG--DGHKDCKVLLTARSLDVLSGKM----DSRPNFSIGVLNEEE 314 (559)
Q Consensus 254 kr~LlVlDdv~~~~~-------------~~~l~~~~~--~~~~gs~IivTTR~~~va~~~~----~~~~~~~l~~L~~~e 314 (559)
.+++|+||+++.... ...+...+. ....+..||.||.......... .-...+.+..-+.++
T Consensus 297 ~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~ 376 (806)
T 3cf2_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376 (806)
T ss_dssp CSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHH
T ss_pred CCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHH
Confidence 789999999964311 111111110 1123445666666544321111 224578899999999
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH
Q 043056 315 AWNLFKKMAGDYIEGSEFQSVARDVAKECAGLPV 348 (559)
Q Consensus 315 a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 348 (559)
-.++|+.+........+. -...|++++.|..-
T Consensus 377 R~~IL~~~l~~~~~~~dv--dl~~lA~~T~Gfsg 408 (806)
T 3cf2_A 377 RLEILQIHTKNMKLADDV--DLEQVANETHGHVG 408 (806)
T ss_dssp HHHHHHHTCSSSEECTTC--CHHHHHHHCCSCCH
T ss_pred HHHHHHHHhcCCCCCccc--CHHHHHHhcCCCCH
Confidence 999998877532222111 14567888888753
No 70
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.35 E-value=0.00066 Score=71.92 Aligned_cols=156 Identities=19% Similarity=0.176 Sum_probs=74.1
Q ss_pred ccchHHHHHHHHHHcC------CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 043056 156 FESRMFTLRNILSALE------DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADK 229 (559)
Q Consensus 156 ~~gR~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 229 (559)
++|-+...+.+.+.+. ......+.++|++|+||||||+.++...... ..-++++...+...+.......
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-----~~~i~~~~~~~~~~~~g~~~~~ 157 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK-----FVRISLGGVRDESEIRGHRRTY 157 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE-----EEEECCCC--------------
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC-----eEEEEecccchhhhhhhHHHHH
Confidence 5565555444433221 2345689999999999999999999887432 2223333322222221111111
Q ss_pred hCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcccc------cchhcCCCCCC---------------CCCcEEEEE
Q 043056 230 LGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENLD------LRVVGIPHGDG---------------HKDCKVLLT 288 (559)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~------~~~l~~~~~~~---------------~~gs~IivT 288 (559)
.+. .............. ..-+++||+++.... ...+...+... .....||.|
T Consensus 158 ig~------~~~~~~~~~~~a~~-~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~t 230 (543)
T 3m6a_A 158 VGA------MPGRIIQGMKKAGK-LNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIAT 230 (543)
T ss_dssp ------------CHHHHHHTTCS-SSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEE
T ss_pred hcc------CchHHHHHHHHhhc-cCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEec
Confidence 111 00111112222211 234888999875421 12222222110 033456666
Q ss_pred ecCcchh-ccCCCCCCeeecCCCCHHHHHHHHHHHh
Q 043056 289 ARSLDVL-SGKMDSRPNFSIGVLNEEEAWNLFKKMA 323 (559)
Q Consensus 289 TR~~~va-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 323 (559)
|...... .........+.+.+++.++-..++..++
T Consensus 231 tN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 231 ANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp CSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred cCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 6653321 1111122478999999999988887764
No 71
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.33 E-value=2.5e-05 Score=67.20 Aligned_cols=45 Identities=9% Similarity=0.011 Sum_probs=31.1
Q ss_pred CccchHHHHHHHHHHcC--CCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 155 PFESRMFTLRNILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 155 ~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.++|+...++++.+.+. .....-|.|+|++|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 46777777777666654 1222447899999999999999987654
No 72
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.31 E-value=0.0002 Score=79.37 Aligned_cols=148 Identities=14% Similarity=0.178 Sum_probs=81.1
Q ss_pred CccchHHHHHHHHHHcC-------C--CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHH
Q 043056 155 PFESRMFTLRNILSALE-------D--PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGE 225 (559)
Q Consensus 155 ~~~gR~~~~~~l~~~L~-------~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 225 (559)
.++|.+..++.+...+. . .....+.++|++|+|||++|+.+++..... -...+.++++.-....
T Consensus 492 ~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~~~~~~----- 564 (758)
T 3pxi_A 492 RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKH----- 564 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGGGCSSC-----
T ss_pred cCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechhccccc-----
Confidence 47788888877776654 1 122379999999999999999999986332 2234556654322100
Q ss_pred HHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc--ccchhcCC-----CCC------CCCCcEEEEEecCc
Q 043056 226 IADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL--DLRVVGIP-----HGD------GHKDCKVLLTARSL 292 (559)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~-----~~~------~~~gs~IivTTR~~ 292 (559)
.. . ...+...+......+|+||++.... ....+... +.. .....+||+||...
T Consensus 565 ---------~~-~----~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~ 630 (758)
T 3pxi_A 565 ---------ST-S----GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVG 630 (758)
T ss_dssp ---------CC-C-------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSS
T ss_pred ---------cc-c----cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCC
Confidence 00 0 1111222222344589999996542 12222111 111 12356788888731
Q ss_pred c-------------hhccC-CCCCCeeecCCCCHHHHHHHHHHHh
Q 043056 293 D-------------VLSGK-MDSRPNFSIGVLNEEEAWNLFKKMA 323 (559)
Q Consensus 293 ~-------------va~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~ 323 (559)
. ..... ..-...+.+.+|+.++...++...+
T Consensus 631 ~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 631 ASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp TTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 1 00000 1122588899999999888887654
No 73
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.26 E-value=0.0037 Score=59.13 Aligned_cols=148 Identities=17% Similarity=0.185 Sum_probs=77.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEE
Q 043056 178 LGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKIL 257 (559)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~L 257 (559)
+.|+|++|+|||||++.++..... ..+.++.. .+ .... . .........+.+......+.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~-----~~i~~~~~------~~----~~~~----~-~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARV-----PFITASGS------DF----VEMF----V-GVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHH------HH----HHSC----T-THHHHHHHHHHHHHTTSSSEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC-----CEEEeeHH------HH----HHHH----h-hHHHHHHHHHHHHHHhcCCeE
Confidence 899999999999999999987642 22333211 11 1100 0 001112233344433345689
Q ss_pred EEEeCCCccc------------c----cchhcCCCCCC--CCCcEEEEEecCcchhcc-CC---CCCCeeecCCCCHHHH
Q 043056 258 IILDNIWENL------------D----LRVVGIPHGDG--HKDCKVLLTARSLDVLSG-KM---DSRPNFSIGVLNEEEA 315 (559)
Q Consensus 258 lVlDdv~~~~------------~----~~~l~~~~~~~--~~gs~IivTTR~~~va~~-~~---~~~~~~~l~~L~~~ea 315 (559)
+++|+++... . ...+...+..+ .....++.||........ .. .....+.++..+.++-
T Consensus 112 ~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r 191 (254)
T 1ixz_A 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 191 (254)
T ss_dssp EEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHH
T ss_pred EEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHH
Confidence 9999994321 0 11121111111 122345556666554311 11 2345788999999888
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 043056 316 WNLFKKMAGDYIEGSEFQSVARDVAKECAGLP 347 (559)
Q Consensus 316 ~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (559)
.++++..+......++. ....+++.+.|.-
T Consensus 192 ~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 221 (254)
T 1ixz_A 192 EQILRIHARGKPLAEDV--DLALLAKRTPGFV 221 (254)
T ss_dssp HHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred HHHHHHHHcCCCCCccc--CHHHHHHHcCCCC
Confidence 88888776432211111 1345667777754
No 74
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.19 E-value=0.0023 Score=71.76 Aligned_cols=46 Identities=24% Similarity=0.325 Sum_probs=35.5
Q ss_pred CccchHHHHHHHHHHcC-------C--CCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 155 PFESRMFTLRNILSALE-------D--PDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 155 ~~~gR~~~~~~l~~~L~-------~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.++|.+..++.+...+. + .....+.|+|++|+|||++|+.+++...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46788887777766553 1 1235799999999999999999998764
No 75
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.17 E-value=0.0003 Score=68.70 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=34.9
Q ss_pred CccchHHHHHHHHHHcC--CCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 155 PFESRMFTLRNILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 155 ~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.++|+...+.++.+.+. ......|.|+|++|+|||++|+.+++...
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 46787777777766654 23335678999999999999999998653
No 76
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.16 E-value=0.0052 Score=58.87 Aligned_cols=149 Identities=13% Similarity=0.160 Sum_probs=80.8
Q ss_pred CCCccchHHHHHHHHHHcC--------------CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcC
Q 043056 153 YLPFESRMFTLRNILSALE--------------DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQD 218 (559)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~--------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 218 (559)
...+.|-++..+.|.+.+. ... +-+.++|++|+||||||+.++..... ..+.+..+.-.+
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~-~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~ 82 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTP-AGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLN 82 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCC-SEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCS
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCC-CeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHh
Confidence 3446666666665554332 112 23999999999999999999987543 234444322111
Q ss_pred --HHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcccc---------c----chhcCCCCC--CCC
Q 043056 219 --IRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENLD---------L----RVVGIPHGD--GHK 281 (559)
Q Consensus 219 --~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~---------~----~~l~~~~~~--~~~ 281 (559)
..+ ....+..+.+......++++++|+++.... . ..+...+.. ...
T Consensus 83 ~~~~~-----------------~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~ 145 (274)
T 2x8a_A 83 MYVGE-----------------SERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ 145 (274)
T ss_dssp STTHH-----------------HHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTT
T ss_pred hhhhH-----------------HHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccC
Confidence 000 011222333333234678999999964311 0 111111111 122
Q ss_pred CcEEEEEecCcchhccC-C---CCCCeeecCCCCHHHHHHHHHHHhC
Q 043056 282 DCKVLLTARSLDVLSGK-M---DSRPNFSIGVLNEEEAWNLFKKMAG 324 (559)
Q Consensus 282 gs~IivTTR~~~va~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~ 324 (559)
..-++.+|....+.... . .-...+.++..+.++-.++|+....
T Consensus 146 ~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 146 QVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp CEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred CEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 34566677766554111 1 2345788899999999999988764
No 77
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.14 E-value=0.0055 Score=58.80 Aligned_cols=148 Identities=17% Similarity=0.174 Sum_probs=78.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEE
Q 043056 178 LGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKIL 257 (559)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~L 257 (559)
+.|+|++|+|||||++.++..... ..+.++.. .+ .... . .........+.+......+.+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~-----~~i~~~~~------~~----~~~~----~-~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARV-----PFITASGS------DF----VEMF----V-GVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHH------HH----HHST----T-THHHHHHHHHHHHHHTSCSEE
T ss_pred EEEECCCcChHHHHHHHHHHHcCC-----CEEEecHH------HH----HHHH----h-hHHHHHHHHHHHHHHhcCCcE
Confidence 899999999999999999987642 23333321 11 1100 0 001112233444433345689
Q ss_pred EEEeCCCccc------------c----cchhcCCCCCCC--CCcEEEEEecCcchhcc----CCCCCCeeecCCCCHHHH
Q 043056 258 IILDNIWENL------------D----LRVVGIPHGDGH--KDCKVLLTARSLDVLSG----KMDSRPNFSIGVLNEEEA 315 (559)
Q Consensus 258 lVlDdv~~~~------------~----~~~l~~~~~~~~--~gs~IivTTR~~~va~~----~~~~~~~~~l~~L~~~ea 315 (559)
+++|+++... . ...+...+..+. ....++.||........ .......+.+...+.++-
T Consensus 136 ~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r 215 (278)
T 1iy2_A 136 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 215 (278)
T ss_dssp EEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHH
T ss_pred EehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHH
Confidence 9999994220 0 111211222111 22345556665544310 112345788999999988
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 043056 316 WNLFKKMAGDYIEGSEFQSVARDVAKECAGLP 347 (559)
Q Consensus 316 ~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (559)
.+++...+......++. ....++..+.|..
T Consensus 216 ~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 245 (278)
T 1iy2_A 216 EQILRIHARGKPLAEDV--DLALLAKRTPGFV 245 (278)
T ss_dssp HHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred HHHHHHHHccCCCCccc--CHHHHHHHcCCCC
Confidence 88888776532211111 1345677777765
No 78
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.11 E-value=0.00064 Score=66.05 Aligned_cols=28 Identities=39% Similarity=0.483 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
.++.+.++|++|+|||+||+.+++....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567889999999999999999998753
No 79
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.09 E-value=0.00088 Score=74.29 Aligned_cols=56 Identities=14% Similarity=0.221 Sum_probs=39.6
Q ss_pred CccchHHHHHHHHHHcC-------C--CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCC
Q 043056 155 PFESRMFTLRNILSALE-------D--PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQ 215 (559)
Q Consensus 155 ~~~gR~~~~~~l~~~L~-------~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 215 (559)
.++|.+..++.+...+. + .....+.++|++|+|||++|+.+++... ...+.++++.
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~ 523 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSE 523 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGG
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechh
Confidence 46788777777666553 1 1234799999999999999999998773 2344555543
No 80
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.05 E-value=0.0041 Score=64.64 Aligned_cols=175 Identities=16% Similarity=0.169 Sum_probs=90.6
Q ss_pred CCCCCccchHHHHHHHH---HHcCCC---------CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcC
Q 043056 151 KDYLPFESRMFTLRNIL---SALEDP---------DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQD 218 (559)
Q Consensus 151 ~~~~~~~gR~~~~~~l~---~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 218 (559)
..+..+.|.++.+.++. ..+... -.+-+.|+|++|+||||||+.++..... ..+.++.+.-..
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~-----~~i~i~g~~~~~ 102 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGSDFVE 102 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----CEEEEEGGGGTS
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEehhHHHH
Confidence 34456777766555444 333221 1234899999999999999999987642 234444332110
Q ss_pred HHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc------------c----cchhcCCCCC--CC
Q 043056 219 IRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL------------D----LRVVGIPHGD--GH 280 (559)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~------------~----~~~l~~~~~~--~~ 280 (559)
. ... ........+.+......+.++++|+++... . ...+...+.. ..
T Consensus 103 ~--------------~~g-~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~ 167 (499)
T 2dhr_A 103 M--------------FVG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 167 (499)
T ss_dssp S--------------CTT-HHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSS
T ss_pred h--------------hhh-hHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccC
Confidence 0 000 000011111111111245899999995321 0 1122211211 12
Q ss_pred CCcEEEEEecCcchhcc-CC---CCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 043056 281 KDCKVLLTARSLDVLSG-KM---DSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGLP 347 (559)
Q Consensus 281 ~gs~IivTTR~~~va~~-~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (559)
.+..|+.||........ .. .....+.++..+.++-.++++.++......++. ....|+..+.|+.
T Consensus 168 ~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv--~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 168 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 236 (499)
T ss_dssp CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS--TTHHHHTTSCSCC
T ss_pred ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH--HHHHHHHhcCCCC
Confidence 34456666666554321 11 123578899999998889998776432211111 1345777777765
No 81
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.03 E-value=0.0033 Score=60.66 Aligned_cols=85 Identities=8% Similarity=0.078 Sum_probs=57.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcC-----CChhhhH-HHHHHHH
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHE-----ESESGRA-NSLFKRI 250 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~-~~l~~~l 250 (559)
++-|.|++|+|||||+.++......+..=..++|++....++.. .++.++.+.+. ....+.+ ..+.+.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 68999999999999999988775533112468999988877753 36778775432 1122222 3333443
Q ss_pred ---HcCCeEEEEEeCCCcc
Q 043056 251 ---KAEKKILIILDNIWEN 266 (559)
Q Consensus 251 ---~~~kr~LlVlDdv~~~ 266 (559)
..++.-|||+|-+...
T Consensus 105 ~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HTCCTTCCEEEEEECSTTC
T ss_pred HHhhccCceEEEEeccccc
Confidence 4467889999998543
No 82
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.96 E-value=0.0054 Score=57.28 Aligned_cols=90 Identities=13% Similarity=0.136 Sum_probs=54.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccC----CCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCc----------CCChh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDK----LFDQVVFVEVSQNQDIRKLQGEIADKLGLKFH----------EESES 240 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----------~~~~~ 240 (559)
-.++.|+|++|+|||||+..+........ .-..++|++....++...+ ..+++.++.... .....
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 36899999999999999999988532210 1356889988775554443 334455554321 11111
Q ss_pred h---hHHHHHHHHHcCCeEEEEEeCCCc
Q 043056 241 G---RANSLFKRIKAEKKILIILDNIWE 265 (559)
Q Consensus 241 ~---~~~~l~~~l~~~kr~LlVlDdv~~ 265 (559)
+ ....+.+.+...+.-+||+|++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 1 122233444445678899998853
No 83
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.85 E-value=0.0053 Score=56.35 Aligned_cols=44 Identities=23% Similarity=0.259 Sum_probs=33.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQ 223 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 223 (559)
-.++.|+|++|+|||||+..+.. .. -..++|++.....+...+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~~----~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-LS----GKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-HH----CSEEEEEESSCCCCHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-Hc----CCcEEEEECCCCCCHHHHH
Confidence 35899999999999999999988 21 2468888887755555443
No 84
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.85 E-value=0.0062 Score=60.39 Aligned_cols=159 Identities=7% Similarity=-0.055 Sum_probs=98.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHc
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKA 252 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 252 (559)
.-.++..++|+.|.||++.+..+....... .|+....+.+....++.++...+.. ..+ .
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~pl-f 74 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSLCQA-------------------MSL-F 74 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHHHHH-------------------HHH-C
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHHhcC-------------------cCC-c
Confidence 345789999999999999999998876433 2433222233334444443332211 011 2
Q ss_pred CCeEEEEEeCCCc-c--cccchhcCCCCCCCCCcEEEEEecC-------cchhccCCCCCCeeecCCCCHHHHHHHHHHH
Q 043056 253 EKKILIILDNIWE-N--LDLRVVGIPHGDGHKDCKVLLTARS-------LDVLSGKMDSRPNFSIGVLNEEEAWNLFKKM 322 (559)
Q Consensus 253 ~kr~LlVlDdv~~-~--~~~~~l~~~~~~~~~gs~IivTTR~-------~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 322 (559)
+++-++|+|+++. . ..++.+...+....+++.+|++|.. ..+..........+...+++.++....+...
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 5677889999865 2 4455555544444457777766643 1232222344568999999999999888887
Q ss_pred hCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 043056 323 AGDYIEGSEFQSVARDVAKECAGLPVSVVTI 353 (559)
Q Consensus 323 ~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 353 (559)
+...... --.+.+..+++.++|.+..+...
T Consensus 155 ~~~~g~~-i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 155 AKQLNLE-LDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHTTCE-ECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHcCCC-CCHHHHHHHHHHhchHHHHHHHH
Confidence 6422111 11456788999999988766553
No 85
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.77 E-value=0.0017 Score=63.02 Aligned_cols=68 Identities=15% Similarity=0.237 Sum_probs=41.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEe--CCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcC
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEV--SQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAE 253 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (559)
+++.|+|++|+|||+||.++..... ..++|+++ +...+. ...........+.+.+.+.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G-----~~VlyIs~~~eE~v~~---------------~~~~le~~l~~i~~~l~~~ 183 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALG-----GKDKYATVRFGEPLSG---------------YNTDFNVFVDDIARAMLQH 183 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHH-----TTSCCEEEEBSCSSTT---------------CBCCHHHHHHHHHHHHHHC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCC-----CCEEEEEecchhhhhh---------------hhcCHHHHHHHHHHHHhhC
Confidence 5678999999999999999988621 12456666 222110 0012223334455555543
Q ss_pred CeEEEEEeCCCc
Q 043056 254 KKILIILDNIWE 265 (559)
Q Consensus 254 kr~LlVlDdv~~ 265 (559)
+ +||+|++..
T Consensus 184 -~-LLVIDsI~a 193 (331)
T 2vhj_A 184 -R-VIVIDSLKN 193 (331)
T ss_dssp -S-EEEEECCTT
T ss_pred -C-EEEEecccc
Confidence 4 999999953
No 86
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.77 E-value=0.0074 Score=59.84 Aligned_cols=59 Identities=17% Similarity=0.325 Sum_probs=41.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccC----CCCeEEEEEeCCCcCHHHHHHHHHHHhCCC
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDK----LFDQVVFVEVSQNQDIRKLQGEIADKLGLK 233 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 233 (559)
.-.++.|+|++|+||||||.+++....... .-..++|++....++...+. .++..++.+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~ 183 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVD 183 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCC
Confidence 346899999999999999999988643211 12468999998877766554 345555543
No 87
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.76 E-value=0.006 Score=60.48 Aligned_cols=85 Identities=18% Similarity=0.244 Sum_probs=54.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcC-----CChhhh-HHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHE-----ESESGR-ANSLFK 248 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~-~~~l~~ 248 (559)
-.++.|.|++|+|||||+.+++...... -..++|++....++.. .++.++..... ....+. ...+..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 3699999999999999999999876543 1347888887766653 45666654322 111222 222222
Q ss_pred HHHcCCeEEEEEeCCCcc
Q 043056 249 RIKAEKKILIILDNIWEN 266 (559)
Q Consensus 249 ~l~~~kr~LlVlDdv~~~ 266 (559)
.+...+.-++|+|.+...
T Consensus 134 l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHTSCCSEEEEECTTTC
T ss_pred HhhhcCCCeEEehHhhhh
Confidence 223355668999998543
No 88
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.76 E-value=0.0024 Score=59.33 Aligned_cols=38 Identities=24% Similarity=0.396 Sum_probs=28.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCC
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQ 215 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 215 (559)
.++.|.|++|+|||||+..++....... ..++|++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~--~~v~~~~~~~ 61 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDG--DPCIYVTTEE 61 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHT--CCEEEEESSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCC--CeEEEEEccc
Confidence 5899999999999999999986654321 2466666543
No 89
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.69 E-value=0.0024 Score=55.05 Aligned_cols=40 Identities=13% Similarity=0.263 Sum_probs=29.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCC
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQ 215 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 215 (559)
.-..+.|+|+.|+|||||++.++...... .+ .+++++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHH
Confidence 44689999999999999999999977542 12 256665443
No 90
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.58 E-value=0.007 Score=59.54 Aligned_cols=89 Identities=20% Similarity=0.349 Sum_probs=55.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccC----CCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCc---------CCChh-
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDK----LFDQVVFVEVSQNQDIRKLQGEIADKLGLKFH---------EESES- 240 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------~~~~~- 240 (559)
-.++.|+|++|+||||||.+++....... .-..++|++....++...+. .+++.++.+.. .....
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 36899999999999999999987643210 02468999988877766654 34556654321 01111
Q ss_pred ---hhHHHHHHHHHc-CCeEEEEEeCCC
Q 043056 241 ---GRANSLFKRIKA-EKKILIILDNIW 264 (559)
Q Consensus 241 ---~~~~~l~~~l~~-~kr~LlVlDdv~ 264 (559)
.....+...+.+ .+.-+||+|.+.
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 122333334443 567788888884
No 91
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.56 E-value=0.0088 Score=66.35 Aligned_cols=151 Identities=13% Similarity=0.154 Sum_probs=82.4
Q ss_pred CCCccchHHHHHHHHHHcC-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCH
Q 043056 153 YLPFESRMFTLRNILSALE-------------DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDI 219 (559)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 219 (559)
...+.|.+..+++|.+++. -.....|.|+|++|+||||||+.++...... .+.++.+.
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~-----~i~v~~~~---- 273 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGPE---- 273 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE-----EEEEEHHH----
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc-----EEEEEchH----
Confidence 3456777776666665542 1334579999999999999999998865321 23333211
Q ss_pred HHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCcccc-------------cchh---cCCCCCCCCCc
Q 043056 220 RKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENLD-------------LRVV---GIPHGDGHKDC 283 (559)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l---~~~~~~~~~gs 283 (559)
+ ..... .........+.+......+.++++|++..... ...+ ...+. ...+.
T Consensus 274 --l--------~~~~~-g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~~~v 341 (806)
T 1ypw_A 274 --I--------MSKLA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRAHV 341 (806)
T ss_dssp --H--------SSSST-THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TTSCC
T ss_pred --h--------hhhhh-hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-ccccE
Confidence 0 00000 11112233344443334678999999953210 0111 11111 12344
Q ss_pred EEEEEecCcchhccCC----CCCCeeecCCCCHHHHHHHHHHHhC
Q 043056 284 KVLLTARSLDVLSGKM----DSRPNFSIGVLNEEEAWNLFKKMAG 324 (559)
Q Consensus 284 ~IivTTR~~~va~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~ 324 (559)
.+|.||....-..... .....+.+...+.++-.+++...+.
T Consensus 342 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp EEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred EEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 5666665533221111 1224678888999999999987765
No 92
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.56 E-value=0.0085 Score=58.86 Aligned_cols=89 Identities=15% Similarity=0.246 Sum_probs=55.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccc------------CCC--CeEEEEEeCCCcCHHHHHHHHHHHhCCCCc-----
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSD------------KLF--DQVVFVEVSQNQDIRKLQGEIADKLGLKFH----- 235 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~------------~~f--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----- 235 (559)
-.++.|+|++|+||||||.+++...... ... ..++|++....++...+.. +++.++.+..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDN 176 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcC
Confidence 4689999999999999999998763211 101 4689999988877766653 4555654321
Q ss_pred ----CCChhh----hHHHHHHHHHc-CCeEEEEEeCCC
Q 043056 236 ----EESESG----RANSLFKRIKA-EKKILIILDNIW 264 (559)
Q Consensus 236 ----~~~~~~----~~~~l~~~l~~-~kr~LlVlDdv~ 264 (559)
.....+ ....+...+.+ .+.-+||+|.+.
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 001111 22233444444 456788899884
No 93
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.54 E-value=0.0027 Score=61.94 Aligned_cols=53 Identities=26% Similarity=0.413 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHcCC---CCceEEEEEcCCCCcHHHHHHHHHHHhc-ccCCCCeEEEEEe
Q 043056 159 RMFTLRNILSALED---PDVNMLGIYGMGGIGKTMLAEEVARKVK-SDKLFDQVVFVEV 213 (559)
Q Consensus 159 R~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~~ 213 (559)
+...++.+.+++.. .....+.|+|++|+|||+||..+++... ... + .++++++
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g-~-~v~~~~~ 189 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKG-V-STTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSC-C-CEEEEEH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcC-C-cEEEEEH
Confidence 44445555555542 1246789999999999999999999876 432 2 3555554
No 94
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.50 E-value=0.0083 Score=60.60 Aligned_cols=88 Identities=15% Similarity=0.216 Sum_probs=53.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccc----CCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCc---------C-CCh--
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSD----KLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFH---------E-ESE-- 239 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------~-~~~-- 239 (559)
.++.|+|++|+|||||+.+++-..... ..-..++|++....+....+ ..+++.++.... . ...
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~~ 257 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNADH 257 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChHH
Confidence 689999999999999999876443211 01346889988776655443 346666665321 0 011
Q ss_pred -hhhHHHHHHHHHcCCeEEEEEeCCC
Q 043056 240 -SGRANSLFKRIKAEKKILIILDNIW 264 (559)
Q Consensus 240 -~~~~~~l~~~l~~~kr~LlVlDdv~ 264 (559)
......+...+...+.-+||+|.+.
T Consensus 258 ~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 258 QLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHHhcCCceEEecchh
Confidence 1122333344444567788888873
No 95
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.48 E-value=0.0093 Score=59.19 Aligned_cols=84 Identities=19% Similarity=0.273 Sum_probs=53.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcC-----CChhhhHHHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHE-----ESESGRANSLFKR 249 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 249 (559)
-.++.|+|++|+||||||.++....... =..++|++....++.. .++.++..... ....+....+...
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4689999999999999999998765433 2358899988766543 35556654321 1122222233333
Q ss_pred HH-cCCeEEEEEeCCCc
Q 043056 250 IK-AEKKILIILDNIWE 265 (559)
Q Consensus 250 l~-~~kr~LlVlDdv~~ 265 (559)
+. ..+.-+||+|.+..
T Consensus 134 l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHTTTCCSEEEEECGGG
T ss_pred HHhcCCCCEEEEcChHh
Confidence 33 34567999999854
No 96
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.41 E-value=0.012 Score=58.68 Aligned_cols=84 Identities=19% Similarity=0.271 Sum_probs=53.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcC-----CChhhhHHHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHE-----ESESGRANSLFKR 249 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 249 (559)
-.++.|.|++|+||||||.++....... -..++|++....++.. .++.++.+... ....+......+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 3588999999999999999988775433 2368999988766643 24556554321 1122222233333
Q ss_pred HH-cCCeEEEEEeCCCc
Q 043056 250 IK-AEKKILIILDNIWE 265 (559)
Q Consensus 250 l~-~~kr~LlVlDdv~~ 265 (559)
+. ..+.-+||+|.+..
T Consensus 147 l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHTTTCCSEEEEECTTT
T ss_pred HHhcCCCCEEEEeChHH
Confidence 33 34456999999853
No 97
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.36 E-value=0.012 Score=56.90 Aligned_cols=87 Identities=13% Similarity=0.129 Sum_probs=47.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCC-CcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQ-NQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKA 252 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 252 (559)
...+++++|++|+||||++..++.....+.. ..+..+.... .....+.+....+..+.+.........+......+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG--
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh--
Confidence 4579999999999999999999987653211 2345555432 22333334444444443322111122222333333
Q ss_pred CCeEEEEEeCC
Q 043056 253 EKKILIILDNI 263 (559)
Q Consensus 253 ~kr~LlVlDdv 263 (559)
.+.=++++|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 23457888843
No 98
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.32 E-value=0.16 Score=51.71 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=25.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSD 202 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (559)
.+.+|.++|++|+||||++..++.....+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 46899999999999999999999877643
No 99
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.32 E-value=0.013 Score=58.15 Aligned_cols=83 Identities=20% Similarity=0.313 Sum_probs=53.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcC-----CChhhhHHHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHE-----ESESGRANSLFKR 249 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 249 (559)
-.++.|.|++|+||||||.++....... -..++|++....++.. .+..++.+... ....+....+...
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 4689999999999999999998776543 2358899988776643 24556554321 1112223333333
Q ss_pred HH-cCCeEEEEEeCCC
Q 043056 250 IK-AEKKILIILDNIW 264 (559)
Q Consensus 250 l~-~~kr~LlVlDdv~ 264 (559)
+. ..+.-+||+|.+.
T Consensus 136 l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 136 LARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHTCCSEEEEECGG
T ss_pred HHhccCCCEEEEcCHH
Confidence 32 3455699999984
No 100
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.28 E-value=0.064 Score=54.51 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=36.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCC-CcCHHHHHHHHHHHhCC
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQ-NQDIRKLQGEIADKLGL 232 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~ 232 (559)
...+|.++|++|+||||++..++.....++ . .+..++... .....+-+.......+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G-~-kVllv~~D~~r~~a~eqL~~~~~~~gv 153 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG-Y-KVGLVAADVYRPAAYDQLLQLGNQIGV 153 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT-C-CEEEEEECCSCHHHHHHHHHHHHTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC-C-eEEEEecCccchhHHHHHHHHHHhcCC
Confidence 468999999999999999999998876542 2 344444432 22233333444444444
No 101
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.25 E-value=0.0042 Score=56.48 Aligned_cols=43 Identities=21% Similarity=0.300 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHcC---CCCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 159 RMFTLRNILSALE---DPDVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 159 R~~~~~~l~~~L~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
|.+.++.|.+.+. .....+|+|.|++|+||||+++.+......
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 5556677776664 245579999999999999999999886643
No 102
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.21 E-value=0.023 Score=52.45 Aligned_cols=90 Identities=23% Similarity=0.261 Sum_probs=51.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccc---C-CCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCc----------CCCh-
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSD---K-LFDQVVFVEVSQNQDIRKLQGEIADKLGLKFH----------EESE- 239 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~-~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----------~~~~- 239 (559)
-.+++|+|++|+|||||++.++...... . .-...+|+.......... ...+.+..+.... ....
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNSN 103 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTSCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCCCHHHHhhcEEEEecCChH
Confidence 3689999999999999999998743321 0 134578887655443332 2334444443211 0011
Q ss_pred --hhhHHHHHHHHH-----cCCeEEEEEeCCCc
Q 043056 240 --SGRANSLFKRIK-----AEKKILIILDNIWE 265 (559)
Q Consensus 240 --~~~~~~l~~~l~-----~~kr~LlVlDdv~~ 265 (559)
......+...+. ..++-+||+|....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 104 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred HHHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 111223333333 45788999998854
No 103
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.20 E-value=0.0054 Score=56.04 Aligned_cols=41 Identities=22% Similarity=0.435 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCC--CCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 161 FTLRNILSALED--PDVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 161 ~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
..+++|.+.+.. +...+|+|+|++|+|||||++.+......
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 455666666652 45679999999999999999999887653
No 104
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.03 E-value=0.017 Score=58.99 Aligned_cols=87 Identities=22% Similarity=0.372 Sum_probs=51.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCC-------CCcCCCh-hhh-----
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQ-DIRKLQGEIADKLGL-------KFHEESE-SGR----- 242 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~~~~~-~~~----- 242 (559)
.+.|+|++|+|||||+..+......+. -+.++++.+++.. ...+++.++...-.. ....++. ...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~-~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~ 231 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEH-GGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALT 231 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHT-CCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhcc-CcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHH
Confidence 588999999999999999988765432 2345667776654 344555555432100 0011111 111
Q ss_pred HHHHHHHHH--cCCeEEEEEeCCC
Q 043056 243 ANSLFKRIK--AEKKILIILDNIW 264 (559)
Q Consensus 243 ~~~l~~~l~--~~kr~LlVlDdv~ 264 (559)
...+.+.+. ++++.||++||+.
T Consensus 232 ~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 232 GLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHHHHHHHHSCCEEEEEEECTH
T ss_pred HHHHHHHHHHhcCCcEEEEeccHH
Confidence 123334443 4899999999994
No 105
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.99 E-value=0.0063 Score=57.89 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=37.9
Q ss_pred CCccchHHHHHHHHHHcC--CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCC
Q 043056 154 LPFESRMFTLRNILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQ 215 (559)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 215 (559)
..++|....+..+.+.+. ......|.|+|++|+|||++|+.+++...... ...+.++++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~--~~~~~v~~~~ 67 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQ--GPFISLNCAA 67 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTT--SCEEEEEGGG
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccC--CCeEEEecCC
Confidence 446788777777665543 12235678999999999999999998754321 2245555554
No 106
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.90 E-value=0.067 Score=52.17 Aligned_cols=62 Identities=16% Similarity=0.175 Sum_probs=43.1
Q ss_pred HHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 043056 162 TLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADK 229 (559)
Q Consensus 162 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 229 (559)
.++.++.-+. .-.++.|.|.+|+||||||.+++.....++ ..++|++.. -+..++...+...
T Consensus 57 ~LD~~lgGl~--~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 57 ELDRMTYGYK--RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp HHHHHHSSBC--TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred HHHhhcCCCC--CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 4566553232 235899999999999999999987765442 568888766 4556666666554
No 107
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.89 E-value=0.0082 Score=59.50 Aligned_cols=51 Identities=16% Similarity=0.113 Sum_probs=34.1
Q ss_pred HHHHcC-CCCceEEEEEcCCCCcHHHHHHHHHHHhcccC-CCCeEEEEEeCCCc
Q 043056 166 ILSALE-DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDK-LFDQVVFVEVSQNQ 217 (559)
Q Consensus 166 l~~~L~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~~~wv~~s~~~ 217 (559)
.++.+. -..-..++|+|++|+|||||++.+.+....++ .+. ++++-+++..
T Consensus 164 aID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~ 216 (422)
T 3ice_A 164 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERP 216 (422)
T ss_dssp HHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCH
T ss_pred eeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCCh
Confidence 444443 22335799999999999999999988765432 233 4457777654
No 108
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.87 E-value=0.0049 Score=54.59 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999998764
No 109
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.86 E-value=0.0052 Score=53.98 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
++|.|.|++|+||||+++.+.....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988764
No 110
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.80 E-value=0.0053 Score=54.00 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 043056 176 NMLGIYGMGGIGKTMLAEEV 195 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v 195 (559)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999999
No 111
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.69 E-value=0.023 Score=53.14 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVAR 197 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~ 197 (559)
-.+++|.|+.|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999884
No 112
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.67 E-value=0.03 Score=55.57 Aligned_cols=68 Identities=24% Similarity=0.345 Sum_probs=41.1
Q ss_pred HHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhccc---CCC-CeEEEEEeCCCcCHHHHHHHHHHHhC
Q 043056 162 TLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSD---KLF-DQVVFVEVSQNQDIRKLQGEIADKLG 231 (559)
Q Consensus 162 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~ 231 (559)
.++.++.. .=+.-.++.|+|++|+|||||+.+++...... ... ..++|++....+....+ ..+++.++
T Consensus 119 ~LD~lL~g-gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~ 190 (349)
T 1pzn_A 119 SLDKLLGG-GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRG 190 (349)
T ss_dssp HHHHHHTS-SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTT
T ss_pred HHHHHhcC-CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcC
Confidence 35555431 11234799999999999999999998865211 001 24588887665443332 33444443
No 113
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.65 E-value=0.0064 Score=54.12 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
++++|+|++|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998764
No 114
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.61 E-value=0.0073 Score=53.46 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 043056 176 NMLGIYGMGGIGKTMLAEEVAR 197 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~ 197 (559)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 115
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.54 E-value=0.0083 Score=54.31 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.++|.|+|++|+||||+++.+.....
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998764
No 116
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.54 E-value=0.0066 Score=53.41 Aligned_cols=25 Identities=20% Similarity=0.398 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.+|+|+|+.|+||||+++.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988754
No 117
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.51 E-value=0.054 Score=50.41 Aligned_cols=39 Identities=18% Similarity=0.282 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCC
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQN 216 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 216 (559)
.++.|.|++|+|||||+.+++...... -..++|++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~~ 62 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEEH 62 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccCC
Confidence 589999999999999999887665432 235778776543
No 118
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.49 E-value=0.0084 Score=53.71 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
-.+++|+|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999765
No 119
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.48 E-value=0.0099 Score=53.85 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
....+|+|+|++|+||||+++.+.....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4557999999999999999999998775
No 120
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.48 E-value=0.0087 Score=53.34 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.+.|.|+|++|+||||+|+.+.....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998764
No 121
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.46 E-value=0.064 Score=54.68 Aligned_cols=58 Identities=17% Similarity=0.276 Sum_probs=36.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCC-CcCHHHHHHHHHHHhCC
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQ-NQDIRKLQGEIADKLGL 232 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~ 232 (559)
..++|.++|.+|+||||++..++.....+... .+..++... .....+.+.......+.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~-kVllvd~D~~r~~a~~ql~~~~~~~~l 157 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKK-KVLVVSADVYRPAAIKQLETLAEQVGV 157 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCC-CEEEEECCCSSTTHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEEecCCCCccHHHHHHhhcccCCe
Confidence 46899999999999999999999887654122 345555533 23333333333444443
No 122
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=95.45 E-value=0.17 Score=62.65 Aligned_cols=79 Identities=18% Similarity=0.259 Sum_probs=49.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCe
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKK 255 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 255 (559)
+-+.++|++|+|||++|+.+..... .+ ..+.++.+...+...+++.+-..+.......... ..--..+|+
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~---~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~------~~P~~~gk~ 1337 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSS---LY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLT------LLPKSDIKN 1337 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCS---SC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEE------EEEBSSSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCC---CC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcc------ccCCCCCce
Confidence 5688999999999999988776532 12 4566788887777777666665543211000000 000002678
Q ss_pred EEEEEeCCC
Q 043056 256 ILIILDNIW 264 (559)
Q Consensus 256 ~LlVlDdv~ 264 (559)
+++.+||+.
T Consensus 1338 ~VlFiDEin 1346 (2695)
T 4akg_A 1338 LVLFCDEIN 1346 (2695)
T ss_dssp EEEEEETTT
T ss_pred EEEEecccc
Confidence 999999974
No 123
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.43 E-value=0.009 Score=53.49 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
++|.|.|++|+||||+++.+......
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999998764
No 124
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.42 E-value=0.01 Score=53.12 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
...+|.|.|++|+||||+++.+.....
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999988763
No 125
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.41 E-value=0.023 Score=55.95 Aligned_cols=44 Identities=14% Similarity=0.297 Sum_probs=36.3
Q ss_pred CccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 155 PFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 155 ~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.++|++..++.+...+..+ .-+.++|++|+|||+||+.+.+...
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred ceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4788888888887776543 3588999999999999999998764
No 126
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.41 E-value=0.018 Score=55.44 Aligned_cols=30 Identities=13% Similarity=0.157 Sum_probs=25.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 172 DPDVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
.+...+|+|.|++|+||||||+.+......
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345679999999999999999998887653
No 127
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.40 E-value=0.0099 Score=53.84 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
....+|+|.|+.|+|||||++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345789999999999999999998765
No 128
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.40 E-value=0.015 Score=52.05 Aligned_cols=113 Identities=17% Similarity=0.147 Sum_probs=60.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCC---CcCHHHHHHHHHHHhCCC---------CcCCCh---
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQ---NQDIRKLQGEIADKLGLK---------FHEESE--- 239 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~~~l~~~---------~~~~~~--- 239 (559)
...|.|++..|.||||+|-...-+.-... + .+.++.+-+ ......++ +.++.. +.....
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G-~-rV~~vQF~Kg~~~~gE~~~l----~~L~v~~~~~g~gf~~~~~~~~~~ 101 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHG-K-NVGVVQFIKGTWPNGERNLL----EPHGVEFQVMATGFTWETQNREAD 101 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTT-C-CEEEEESSCCSSCCHHHHHH----GGGTCEEEECCTTCCCCGGGHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEEeeCCCCCccHHHHH----HhCCcEEEEcccccccCCCCcHHH
Confidence 45677788888999999999888765432 2 345554433 22333333 333211 111110
Q ss_pred ----hhhHHHHHHHHHcCCeEEEEEeCCCcc-----cccchhcCCCCCCCCCcEEEEEecCcc
Q 043056 240 ----SGRANSLFKRIKAEKKILIILDNIWEN-----LDLRVVGIPHGDGHKDCKVLLTARSLD 293 (559)
Q Consensus 240 ----~~~~~~l~~~l~~~kr~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~IivTTR~~~ 293 (559)
........+.+..++-=|||||++-.. ...+.+...+.......-||+|+|...
T Consensus 102 ~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 102 TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 111223344444455559999998332 222333333333344567999999853
No 129
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.37 E-value=0.05 Score=53.05 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
..+.+|+|.|++|+|||||++.+.....
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456999999999999999999987765
No 130
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.37 E-value=0.0073 Score=59.93 Aligned_cols=49 Identities=16% Similarity=0.229 Sum_probs=35.5
Q ss_pred CCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 152 DYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
....++|.+.....+...+..+...-+.|+|++|+|||+||+.+++...
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 4556888887665544433333334589999999999999999998764
No 131
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.36 E-value=0.051 Score=52.69 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=28.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEe
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEV 213 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 213 (559)
...+|.|+|++|+||||++..++....... ..+.++..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g--~kV~lv~~ 140 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEG--KSVVLAAA 140 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcC--CEEEEEcc
Confidence 457999999999999999999998776431 23455544
No 132
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.34 E-value=0.0098 Score=53.17 Aligned_cols=26 Identities=15% Similarity=0.378 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
.+|.|.|++|+||||+++.+......
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999999999987653
No 133
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.33 E-value=0.011 Score=54.06 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
...+|+|+|++|+|||||++.+.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 346899999999999999999988654
No 134
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.31 E-value=0.0088 Score=53.46 Aligned_cols=24 Identities=25% Similarity=0.348 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
+.|.|+||+|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999998764
No 135
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.30 E-value=0.011 Score=55.91 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
++|.|.|++|+||||||+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999988754
No 136
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.29 E-value=0.0084 Score=54.36 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
..+|.|.|+.|+||||+|+.+.....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988763
No 137
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.25 E-value=0.18 Score=52.39 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
..++|.|+|.+|+||||++..+......
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4679999999999999999999987654
No 138
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.23 E-value=0.06 Score=55.15 Aligned_cols=88 Identities=23% Similarity=0.353 Sum_probs=57.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCCC-------C-------cCCChh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQ-DIRKLQGEIADKLGLK-------F-------HEESES 240 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~-------~~~~~~ 240 (559)
..++|.|.+|+|||+|+..+.+..... +-+.++++-+++.. ...++.+++...=... . .+.+..
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~ 244 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPG 244 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTTT-CSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHhh-CCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHH
Confidence 458999999999999999999875432 35678888887665 4566777766532221 0 011111
Q ss_pred ------hhHHHHHHHHH--cCCeEEEEEeCCC
Q 043056 241 ------GRANSLFKRIK--AEKKILIILDNIW 264 (559)
Q Consensus 241 ------~~~~~l~~~l~--~~kr~LlVlDdv~ 264 (559)
.....+-+.+. +++.+||++||+-
T Consensus 245 ~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 245 ARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp HHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 11233445554 3799999999984
No 139
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.22 E-value=0.015 Score=51.95 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=25.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVKSD 202 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (559)
....+|.|.|++|+||||+++.+.......
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 345789999999999999999999887643
No 140
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.22 E-value=0.01 Score=52.57 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.++|.|.|++|+||||+++.+.....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998764
No 141
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.21 E-value=0.011 Score=53.62 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.+++|+|+.|+|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999998764
No 142
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.20 E-value=0.012 Score=53.26 Aligned_cols=24 Identities=29% Similarity=0.674 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.|+|.|+.|+||||+++.+.....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998765
No 143
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.16 E-value=0.013 Score=51.62 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
-.+|+|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 144
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.16 E-value=0.011 Score=53.86 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
..++|.|+|++|+|||||++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999998875
No 145
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.15 E-value=0.0099 Score=53.16 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
++++|+|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999997754
No 146
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.14 E-value=0.017 Score=53.28 Aligned_cols=37 Identities=27% Similarity=0.344 Sum_probs=28.2
Q ss_pred HHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 164 RNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 164 ~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
+.+...+.......|.|+|.+|+|||||+..+.....
T Consensus 27 ~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 27 DKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3343333345678899999999999999999988754
No 147
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.14 E-value=0.018 Score=55.37 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998764
No 148
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.13 E-value=0.011 Score=52.25 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.|.|.|++|+||||+|+.+.....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998764
No 149
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.13 E-value=0.014 Score=52.33 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
..+|.|.|+.|+||||+|+.+.....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999987654
No 150
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.12 E-value=0.015 Score=52.59 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
....+|.|.|+.|+||||+++.+.....
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3457899999999999999999987653
No 151
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.11 E-value=0.11 Score=53.04 Aligned_cols=88 Identities=22% Similarity=0.365 Sum_probs=57.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCCC------C-------cCCChhh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQ-DIRKLQGEIADKLGLK------F-------HEESESG 241 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~------~-------~~~~~~~ 241 (559)
..++|.|.+|+|||+|+..+.+..... +-+.++++-+++.. ...++.+++...=... . .+.+...
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~~~ 232 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAKA-HGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGA 232 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTTT-CSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHhh-CCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCHHH
Confidence 468999999999999999998875432 34667888887654 4566777776543222 0 0111111
Q ss_pred ------hHHHHHHHHH--cCCeEEEEEeCCC
Q 043056 242 ------RANSLFKRIK--AEKKILIILDNIW 264 (559)
Q Consensus 242 ------~~~~l~~~l~--~~kr~LlVlDdv~ 264 (559)
..-.+-+.+. +++..||++||+-
T Consensus 233 r~~~~~~a~tiAEyfrd~~G~dVLll~Dsit 263 (482)
T 2ck3_D 233 RARVALTGLTVAEYFRDQEGQDVLLFIDNIF 263 (482)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCEEEEEECTH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 1223344443 4899999999984
No 152
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.11 E-value=0.013 Score=53.38 Aligned_cols=27 Identities=37% Similarity=0.478 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
...+|+|.|+.|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 446899999999999999999988654
No 153
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.09 E-value=0.015 Score=50.91 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSD 202 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (559)
..+++.|.|+.|+|||||+..+......+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35789999999999999999999886643
No 154
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.09 E-value=0.014 Score=52.68 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
++..+|+|.|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45679999999999999999999875
No 155
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.09 E-value=0.05 Score=65.13 Aligned_cols=96 Identities=22% Similarity=0.272 Sum_probs=60.5
Q ss_pred HHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcC-----
Q 043056 162 TLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHE----- 236 (559)
Q Consensus 162 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----- 236 (559)
.++.++.+-.=...+.+.|+|++|+|||+||.++......+ =..++|+++...++... ++.++.+...
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~ 1486 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQ 1486 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEEC
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCHHH-----HHHcCCCchhceeec
Confidence 36666541111345789999999999999999998876543 23578888887766554 5556643221
Q ss_pred CChhhhHHHHHH-HHHcCCeEEEEEeCCC
Q 043056 237 ESESGRANSLFK-RIKAEKKILIILDNIW 264 (559)
Q Consensus 237 ~~~~~~~~~l~~-~l~~~kr~LlVlDdv~ 264 (559)
....+....+.. ...+.+.-+||+|.+.
T Consensus 1487 ~~~~E~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1487 PDTGEQALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp CSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred CChHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 111223333333 3344678899999984
No 156
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.07 E-value=0.013 Score=52.01 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.++|+|+.|+|||||++.+.....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 157
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.06 E-value=0.015 Score=52.24 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
...+|.|.|+.|+||||+++.+.....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999988654
No 158
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.05 E-value=0.015 Score=52.81 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
..+|+|+|++|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3689999999999999999998765
No 159
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.04 E-value=0.012 Score=54.28 Aligned_cols=110 Identities=12% Similarity=0.030 Sum_probs=59.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHc-
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKA- 252 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~- 252 (559)
.-.++.|+|+.|+||||++..+..+..... . .++.+....... ....++..++....... ......+.+.+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g-~-kVli~~~~~d~r---~~~~i~srlG~~~~~~~-~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYAD-V-KYLVFKPKIDTR---SIRNIQSRTGTSLPSVE-VESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTT-C-CEEEEEECCCGG---GCSSCCCCCCCSSCCEE-ESSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcC-C-EEEEEEeccCch---HHHHHHHhcCCCccccc-cCCHHHHHHHHHHH
Confidence 346899999999999999999988876542 2 344444333211 12234444554332211 1112234444432
Q ss_pred ---CCeEEEEEeCCCcc--cccchhcCCCCCCCCCcEEEEEecCc
Q 043056 253 ---EKKILIILDNIWEN--LDLRVVGIPHGDGHKDCKVLLTARSL 292 (559)
Q Consensus 253 ---~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~ 292 (559)
++.-+|++|.+... ...+.+. .+.+ .|..||+|-+..
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLDK 126 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCSB
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEeccc
Confidence 34459999999643 2222221 1211 267788888754
No 160
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.00 E-value=0.015 Score=52.08 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 043056 176 NMLGIYGMGGIGKTMLAEEVAR 197 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~ 197 (559)
.+++|.|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 161
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.00 E-value=0.015 Score=52.44 Aligned_cols=27 Identities=15% Similarity=0.359 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
..++|+|+|++|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 447899999999999999999987643
No 162
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.00 E-value=0.017 Score=52.97 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=25.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
...++|.|.|++|+||||.|+.+.....
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 4568999999999999999999998765
No 163
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.99 E-value=0.016 Score=51.61 Aligned_cols=25 Identities=36% Similarity=0.360 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
....|.|+|+.|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999886
No 164
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.98 E-value=0.34 Score=47.42 Aligned_cols=62 Identities=18% Similarity=0.138 Sum_probs=42.1
Q ss_pred HHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 043056 162 TLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADK 229 (559)
Q Consensus 162 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 229 (559)
.++.++.-+.. -.++.|.|.+|+||||||.+++...... =..++|++.. -+..++...++..
T Consensus 35 ~LD~~~gGl~~--G~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSlE--ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 35 QLDNYTSGFNK--GSLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSLE--MSAEQLALRALSD 96 (338)
T ss_dssp HHHHHHCSBCT--TCEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEESS--SCHHHHHHHHHHH
T ss_pred HHHHHhcCCCC--CcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCC--CCHHHHHHHHHHH
Confidence 45665543332 2589999999999999999998876542 2357777664 4456666666543
No 165
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.98 E-value=0.017 Score=52.60 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=23.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
.+|.|.|+.|+||||+++.+......
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 68999999999999999999998764
No 166
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.97 E-value=0.025 Score=55.58 Aligned_cols=40 Identities=28% Similarity=0.350 Sum_probs=29.7
Q ss_pred HHHHHHHHHc----CCCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 161 FTLRNILSAL----EDPDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 161 ~~~~~l~~~L----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
...+.+++.+ ..+....|.|+|++|+||||+++.++....
T Consensus 6 ~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 6 KLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3344444443 355667799999999999999999988765
No 167
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.97 E-value=0.012 Score=53.35 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
++++|+|++|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998754
No 168
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.95 E-value=0.024 Score=56.56 Aligned_cols=45 Identities=24% Similarity=0.267 Sum_probs=34.6
Q ss_pred ccchHHHHHHHHHHcC---------------CCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 156 FESRMFTLRNILSALE---------------DPDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 156 ~~gR~~~~~~l~~~L~---------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
++|.+..++.+...+. ......+.++|++|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5777777777766661 11345789999999999999999998864
No 169
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.95 E-value=0.018 Score=52.07 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
...+|.|.|+.|+||||+|+.+.....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 446899999999999999999988764
No 170
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.93 E-value=0.017 Score=51.41 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
...|.|.|+.|+||||+++.+.....
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999987653
No 171
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.93 E-value=0.012 Score=52.32 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
++|.|.|++|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998764
No 172
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.92 E-value=0.015 Score=53.60 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.+|+|+|+.|+||||+++.+.....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999987654
No 173
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.92 E-value=0.017 Score=54.39 Aligned_cols=28 Identities=14% Similarity=0.323 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
....+|+|.|+.|+||||+|+.+.....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4567999999999999999999988654
No 174
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.91 E-value=0.015 Score=53.28 Aligned_cols=40 Identities=25% Similarity=0.307 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 161 FTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 161 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
+..+.+...+.....++|+|+|.+|+|||||+..+.....
T Consensus 16 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 16 RLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3344444444345678999999999999999999988754
No 175
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.90 E-value=0.012 Score=61.35 Aligned_cols=43 Identities=21% Similarity=0.245 Sum_probs=36.0
Q ss_pred ccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 156 FESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 156 ~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
++|++..++.+...+..+ .-|.++|++|+|||+||+.+++...
T Consensus 24 ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 24 LYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp CSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 788888888887776544 4688999999999999999998764
No 176
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.89 E-value=0.29 Score=47.84 Aligned_cols=58 Identities=22% Similarity=0.318 Sum_probs=36.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCC-CcCHHHHHHHHHHHhCC
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQ-NQDIRKLQGEIADKLGL 232 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~ 232 (559)
+...+++|+|+.|+||||++..+........ . .+.+....- .....+-+....+.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~-g-~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHG-F-SVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTT-C-CEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC-C-EEEEEeecccccchHHHHHHHHHHcCc
Confidence 4567999999999999999999998766432 1 244443321 22333444455555553
No 177
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.89 E-value=0.014 Score=51.28 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
++|.|.|+.|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999998764
No 178
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.89 E-value=0.016 Score=52.13 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
..+|.|.|+.|+||||+|+.+.....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999998764
No 179
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.89 E-value=0.017 Score=50.51 Aligned_cols=26 Identities=35% Similarity=0.508 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
..+|.|.|+.|+||||+++.+.....
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998765
No 180
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.84 E-value=0.016 Score=56.51 Aligned_cols=41 Identities=20% Similarity=0.428 Sum_probs=31.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCC
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQ 215 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 215 (559)
++.++|+|.|-|||||||.+..+..-..... ..+.-|.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~G--kkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCC--CeEEEEecCC
Confidence 4679999999999999999999888765542 2466666653
No 181
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.83 E-value=0.018 Score=50.27 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.|.|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998764
No 182
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.81 E-value=0.018 Score=54.01 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
..+|+|.|+.|+|||||++.+.....
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999997764
No 183
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.79 E-value=0.016 Score=52.51 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 043056 176 NMLGIYGMGGIGKTMLAEEVAR 197 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~ 197 (559)
.+|+|.|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 184
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.78 E-value=0.015 Score=51.30 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=18.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEV 195 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v 195 (559)
-.+++|+|+.|+|||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999963
No 185
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.75 E-value=0.012 Score=52.14 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=19.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
..+|.|.|+.|+||||+|+.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999988754
No 186
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.74 E-value=0.02 Score=51.17 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
..+|.|.|+.|+||||+++.+.....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988754
No 187
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.73 E-value=0.02 Score=54.27 Aligned_cols=26 Identities=19% Similarity=0.552 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
..+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 188
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.72 E-value=0.02 Score=52.63 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
...|.|.|+.|+||||+++.+.....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998764
No 189
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.71 E-value=0.02 Score=52.10 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
...+|+|+|++|+||||+++.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999998643
No 190
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.71 E-value=0.035 Score=51.98 Aligned_cols=28 Identities=14% Similarity=0.064 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.....|.|.|++|+||||+|+.+.+...
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999987653
No 191
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.70 E-value=0.02 Score=51.28 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
+|+|.|+.|+||||+++.+.....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 192
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.70 E-value=0.057 Score=48.34 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
.|+|.|+.|+||||+++.+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999988743
No 193
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.68 E-value=0.11 Score=50.21 Aligned_cols=87 Identities=21% Similarity=0.231 Sum_probs=49.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCC-cCHHHHHHHHHHHhCCCCcC----CChhhhHHHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQN-QDIRKLQGEIADKLGLKFHE----ESESGRANSLFKR 249 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~l~~~ 249 (559)
..++.++|++|+||||++..++....... ..+.++..... ....+.++...+..+.+... .+.........+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g--~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKG--FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTT--CCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 57899999999999999999998765432 23556655432 22333344455555543211 1222233344455
Q ss_pred HHcCCeEEEEEeCC
Q 043056 250 IKAEKKILIILDNI 263 (559)
Q Consensus 250 l~~~kr~LlVlDdv 263 (559)
+....-=++++|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 43222237778865
No 194
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.67 E-value=0.021 Score=52.07 Aligned_cols=32 Identities=9% Similarity=0.146 Sum_probs=26.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCe
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQ 207 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~ 207 (559)
..+|.|.|+.|+||||+++.+....... +++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~-~~~v 40 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA-GHRA 40 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 4689999999999999999999887543 3444
No 195
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.66 E-value=0.044 Score=60.12 Aligned_cols=171 Identities=14% Similarity=0.207 Sum_probs=80.1
Q ss_pred CCccchHHHHHHHHHHcC-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHH
Q 043056 154 LPFESRMFTLRNILSALE-------------DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIR 220 (559)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 220 (559)
..+.|-++..+.|.+.+. -...+-|.++|++|.|||.||+.+++..... ++.++. .
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-------f~~v~~----~ 545 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-------FISIKG----P 545 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-------EEECCH----H
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-------eEEecc----c
Confidence 345566666666655443 1234567899999999999999999976532 233321 1
Q ss_pred HHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCeEEEEEeCCCccc--------c--------cchhcCCCC--CCCCC
Q 043056 221 KLQGEIADKLGLKFHEESESGRANSLFKRIKAEKKILIILDNIWENL--------D--------LRVVGIPHG--DGHKD 282 (559)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--------~--------~~~l~~~~~--~~~~g 282 (559)
+ ++. .+.+.+ ...+..++.......+++|+||+++... . ...++..+. ....+
T Consensus 546 ~----l~s----~~vGes-e~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~ 616 (806)
T 3cf2_A 546 E----LLT----MWFGES-EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 616 (806)
T ss_dssp H----HHT----TTCSSC-HHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSS
T ss_pred h----hhc----cccchH-HHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCC
Confidence 1 111 112222 2345566666666779999999986431 0 111211111 12234
Q ss_pred cEEEEEecCcchhc-cCC---CCCCeeecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCC
Q 043056 283 CKVLLTARSLDVLS-GKM---DSRPNFSIGVLNEEEAWNLFKKMAGDYIEGSEFQSVARDVAKECAGL 346 (559)
Q Consensus 283 s~IivTTR~~~va~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl 346 (559)
.-||.||....... ... .-...+.+..-+.++-.++|+.++......++. + ...+++.+.|.
T Consensus 617 V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~-d-l~~la~~t~g~ 682 (806)
T 3cf2_A 617 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV-D-LEFLAKMTNGF 682 (806)
T ss_dssp EEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC---------------
T ss_pred EEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCC-C-HHHHHHhCCCC
Confidence 44554665443321 111 234577777666666677777666432222211 1 34455666664
No 196
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.64 E-value=0.021 Score=52.03 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=26.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCe
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQ 207 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~ 207 (559)
..+|+|.|+.|+||||+++.+....... +++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~-~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN-NVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 4689999999999999999999876543 3554
No 197
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.59 E-value=0.019 Score=52.28 Aligned_cols=25 Identities=12% Similarity=0.316 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
-.+++|+|+.|+|||||++.+..-.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998765
No 198
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.58 E-value=0.023 Score=53.53 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
...+|+|.|+.|+||||+++.+.....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346899999999999999999998765
No 199
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.56 E-value=0.024 Score=53.19 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
...+|+|.|+.|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999998864
No 200
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.54 E-value=0.023 Score=55.35 Aligned_cols=42 Identities=19% Similarity=0.231 Sum_probs=29.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeC
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVS 214 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 214 (559)
....+|+|.|+.|+|||||++.+..-......-..+.++...
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd 129 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTD 129 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecC
Confidence 345799999999999999999998876532111235555543
No 201
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.54 E-value=0.14 Score=49.38 Aligned_cols=88 Identities=24% Similarity=0.328 Sum_probs=48.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcC-HHHHHHHHHHHhCCCCcC----CChhhhHHHHHH
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQD-IRKLQGEIADKLGLKFHE----ESESGRANSLFK 248 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~~----~~~~~~~~~l~~ 248 (559)
...+++|+|++|+||||++..++....... ..+.++....... ....+..+.+..+.+.-. .+..+.......
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~--~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTT--CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 347899999999999999999998766431 2355555432221 112233444555543221 112222233344
Q ss_pred HHHcCCeEEEEEeCC
Q 043056 249 RIKAEKKILIILDNI 263 (559)
Q Consensus 249 ~l~~~kr~LlVlDdv 263 (559)
.+...+.=++++|-.
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 442123457888876
No 202
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.52 E-value=0.021 Score=51.81 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 043056 176 NMLGIYGMGGIGKTMLAEEVAR 197 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~ 197 (559)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 203
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.50 E-value=0.022 Score=52.70 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
...|.|.|+.|+||||+++.+.....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999988653
No 204
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.49 E-value=0.012 Score=53.67 Aligned_cols=26 Identities=27% Similarity=0.547 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
++|+|.|+.|+||||+++.+......
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 37899999999999999999987653
No 205
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.48 E-value=0.023 Score=51.93 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.|.|.|++|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999988754
No 206
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.48 E-value=0.018 Score=52.97 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
-.+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3579999999999999999998754
No 207
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.48 E-value=0.028 Score=52.96 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
...+|.|.|++|+||||+|+.+.....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999988754
No 208
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.47 E-value=0.037 Score=55.49 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
...+.++|++|+|||++|+.+++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 35688999999999999999998763
No 209
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.46 E-value=0.021 Score=52.54 Aligned_cols=26 Identities=23% Similarity=0.144 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
...|.|.|++|+||||+++.+.....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999998765
No 210
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.45 E-value=0.022 Score=52.35 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
-.+++|+|++|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 36899999999999999999988654
No 211
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.40 E-value=0.025 Score=49.03 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.-.+++|.|+.|.|||||++.+..-.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999999875
No 212
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.39 E-value=0.03 Score=50.41 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=27.4
Q ss_pred HHHHHHHcCC-CCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 163 LRNILSALED-PDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 163 ~~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
+..+..++.. +....+.|+|++|+||||+|..+++...
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3344444432 2334799999999999999999998764
No 213
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.39 E-value=0.03 Score=54.27 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
...+++|+|++|+||||++..++.....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4579999999999999999999987654
No 214
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.32 E-value=0.029 Score=50.45 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
...+|+|+|+.|+||||+++.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998864
No 215
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.29 E-value=0.026 Score=51.58 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.|.|.|++|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999987653
No 216
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.26 E-value=0.029 Score=50.70 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
...|+|.|+.|+||||+++.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999875
No 217
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.13 E-value=0.035 Score=50.59 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
....+|.|.|+.|+||||+++.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457899999999999999999988765
No 218
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.12 E-value=0.16 Score=51.45 Aligned_cols=38 Identities=29% Similarity=0.359 Sum_probs=28.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEe
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEV 213 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 213 (559)
...+|.++|++|+||||++..++.....+. ..+..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g--~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEeec
Confidence 357899999999999999999998876432 23444544
No 219
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.10 E-value=0.032 Score=54.67 Aligned_cols=25 Identities=40% Similarity=0.438 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.+|+|.|++|+||||||..++....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998754
No 220
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.10 E-value=0.035 Score=50.89 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVAR 197 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~ 197 (559)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 221
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.06 E-value=0.033 Score=51.57 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
..+|+|.|++|+||||+++.+.....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988764
No 222
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.03 E-value=0.02 Score=56.69 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=34.9
Q ss_pred HHHHHcCC-CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-eEEEEEeCCCc
Q 043056 165 NILSALED-PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFD-QVVFVEVSQNQ 217 (559)
Q Consensus 165 ~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~ 217 (559)
+.++.+.. ..-..+.|+|.+|+|||+|+.++.+....+ +-+ .++++-+++..
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~-~~dv~~V~~lIGER~ 217 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAEN-HPDTIRIILLIDERP 217 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHH-CTTSEEEEEECSCCH
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhc-CCCeEEEEEEeccCc
Confidence 44555542 233468999999999999999999876543 223 23567776643
No 223
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.01 E-value=0.02 Score=50.41 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSD 202 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (559)
++++|+|++|+|||||++.+.......
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 579999999999999999998876543
No 224
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.01 E-value=0.034 Score=53.36 Aligned_cols=25 Identities=28% Similarity=0.617 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHH
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVAR 197 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~ 197 (559)
+...+|+|.|+.|+||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999983
No 225
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.00 E-value=0.034 Score=49.11 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
..+|.|.|+.|+||||+++.+......
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 468999999999999999999887643
No 226
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.98 E-value=0.035 Score=53.56 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.++|.|.||.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998764
No 227
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.97 E-value=0.08 Score=49.32 Aligned_cols=47 Identities=28% Similarity=0.343 Sum_probs=30.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHH
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGE 225 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 225 (559)
.++.|.|.+|+|||+||.+++.....+ .-..+++++.... ...+...
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~-~~~~v~~~s~E~~--~~~~~~~ 77 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEER--ARDLRRE 77 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSSC--HHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCceeecccCC--HHHHHHH
Confidence 589999999999999999976543211 1234667666543 4444443
No 228
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.96 E-value=0.036 Score=50.42 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.+|.|.|++|+||+|.|+.+..+..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3688999999999999999998765
No 229
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.95 E-value=0.033 Score=52.04 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.. .+++|+|+.|+|||||.+.+.--.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 35 789999999999999999987643
No 230
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.94 E-value=0.33 Score=49.73 Aligned_cols=62 Identities=16% Similarity=0.102 Sum_probs=41.5
Q ss_pred HHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHH
Q 043056 162 TLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIAD 228 (559)
Q Consensus 162 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (559)
.++.++.-+. .-.++.|.|.+|+||||||.+++....... -..++|++... +..++...++.
T Consensus 189 ~LD~~lgGl~--~G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE~--~~~~l~~R~~~ 250 (444)
T 2q6t_A 189 ELDQLIGTLG--PGSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLEM--PAAQLTLRMMC 250 (444)
T ss_dssp HHHHHHCCCC--TTCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSS--CHHHHHHHHHH
T ss_pred hhhhhcCCcC--CCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECCC--CHHHHHHHHHH
Confidence 4566653232 235899999999999999999988765321 13577777653 45566666654
No 231
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.91 E-value=0.089 Score=53.34 Aligned_cols=88 Identities=15% Similarity=0.239 Sum_probs=53.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccc-CCCC-eEEEEEeCCC-cCHHHHHHHHHHHhCCC-------CcCCChhh-----
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVKSD-KLFD-QVVFVEVSQN-QDIRKLQGEIADKLGLK-------FHEESESG----- 241 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~-~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 241 (559)
.++|.|.+|+|||+|+.++.+..... ++-+ .++++-+++. ....++.+++...=... ..+.+...
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~ 232 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATP 232 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHH
Confidence 47899999999999999999876542 1122 5667767654 34556666654431111 11122111
Q ss_pred -hHHHHHHHHH--cCCeEEEEEeCCC
Q 043056 242 -RANSLFKRIK--AEKKILIILDNIW 264 (559)
Q Consensus 242 -~~~~l~~~l~--~~kr~LlVlDdv~ 264 (559)
....+-+.+. .++..||++||+-
T Consensus 233 ~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 233 RMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 1234455555 3899999999984
No 232
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.84 E-value=0.045 Score=52.70 Aligned_cols=27 Identities=26% Similarity=0.226 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
..++|.|.|+.|+||||||..++....
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 457899999999999999999998743
No 233
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.83 E-value=0.039 Score=49.96 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
++|+|.|+.|+||||+++.+.....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3899999999999999999988764
No 234
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.82 E-value=0.064 Score=54.69 Aligned_cols=88 Identities=17% Similarity=0.267 Sum_probs=54.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCC--CCeEEEEEeCCCc-CHHHHHHHHHHHhCCC-------CcCCChhh----
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKL--FDQVVFVEVSQNQ-DIRKLQGEIADKLGLK-------FHEESESG---- 241 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 241 (559)
..++|.|.+|+|||+|+.++++.....+. =+.++++-+++.. ...++.+++...=... ..+.+...
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 34778899999999999999998765321 1356677666543 4566666665432111 11111111
Q ss_pred --hHHHHHHHHH--cCCeEEEEEeCC
Q 043056 242 --RANSLFKRIK--AEKKILIILDNI 263 (559)
Q Consensus 242 --~~~~l~~~l~--~~kr~LlVlDdv 263 (559)
....+-+.+. +++..||++||+
T Consensus 233 ~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 233 PRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 1223444444 489999999997
No 235
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.81 E-value=0.022 Score=52.82 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=16.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-HHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVA-RKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~-~~~ 199 (559)
.+++|+|+.|+|||||++.+. ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 689999999999999999998 643
No 236
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.79 E-value=0.065 Score=47.22 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
.+++.|.|+.|+|||||+..+......
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999987543
No 237
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.77 E-value=0.039 Score=53.69 Aligned_cols=26 Identities=27% Similarity=0.232 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.++|.|+|+.|+||||||..++....
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35899999999999999999998653
No 238
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.76 E-value=0.033 Score=49.87 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
+++|+|+.|+|||||++.++....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999988764
No 239
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.75 E-value=0.27 Score=50.57 Aligned_cols=61 Identities=16% Similarity=0.284 Sum_probs=40.7
Q ss_pred HHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHH
Q 043056 162 TLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIA 227 (559)
Q Consensus 162 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 227 (559)
.++.+..-+.. -.++.|.|.+|+|||||+.+++....... -..++|++... +..++...++
T Consensus 192 ~LD~~~gGl~~--G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 192 ELDRMTSGFQR--SDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp HHHHHHSSBCT--TCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHHH
T ss_pred HHHhhcCCCCC--CCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHHH
Confidence 46666533333 35899999999999999999998765421 12577777654 3455555554
No 240
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.72 E-value=0.022 Score=54.89 Aligned_cols=27 Identities=11% Similarity=0.337 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
+..+|+|.|+.|+||||+|+.+.....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988654
No 241
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.72 E-value=0.041 Score=53.52 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
....+|+|.|+.|+|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999988654
No 242
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.70 E-value=0.036 Score=54.13 Aligned_cols=27 Identities=26% Similarity=0.430 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
..++|.|+||.|+|||||+..++....
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 346899999999999999999997643
No 243
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.65 E-value=0.09 Score=50.97 Aligned_cols=43 Identities=19% Similarity=0.385 Sum_probs=31.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCC
Q 043056 172 DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQN 216 (559)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 216 (559)
....++|+|+|-||+||||+|..++......+ ..++-|.....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G--~~VlliD~D~~ 80 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDPK 80 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESSS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence 45678999999999999999999988776542 24666666543
No 244
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.64 E-value=0.036 Score=51.61 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
-.+++|+|+.|+|||||.+.+.--.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3689999999999999999987544
No 245
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.64 E-value=0.042 Score=50.59 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.|.|.|+.|+||||+++.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988763
No 246
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.63 E-value=0.12 Score=47.87 Aligned_cols=36 Identities=19% Similarity=0.356 Sum_probs=28.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEE
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFV 211 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 211 (559)
...|.|.|+.|+||||+++.+....... ++..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeee
Confidence 3689999999999999999999988754 45534433
No 247
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.63 E-value=0.048 Score=50.57 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
...|.|.|+.|+||||+|+.+.....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998764
No 248
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.62 E-value=0.042 Score=50.19 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.|.|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998763
No 249
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.62 E-value=0.046 Score=52.95 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
...+++|+|+.|+||||++..++.....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3479999999999999999999987654
No 250
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.61 E-value=0.036 Score=52.05 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.+|+|+|+.|+||||+++.+.....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999998764
No 251
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.55 E-value=0.044 Score=50.22 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
..|.|.|+.|+||||+|+.+.....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999998764
No 252
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.54 E-value=0.033 Score=51.44 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.+++|+|+.|+|||||.+.+.--.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999987543
No 253
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.51 E-value=0.16 Score=60.02 Aligned_cols=85 Identities=19% Similarity=0.248 Sum_probs=53.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcC------CChhhhHHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHE------ESESGRANSLFK 248 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~ 248 (559)
-.++.|.|++|+||||||.+++...... -..++|++........ .++.++.+... .+..+....+..
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~--g~~VlyiS~Ees~~ql-----~A~~lGvd~~~L~i~~~~~leei~~~l~~ 804 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 804 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHc--CCCeEEEeccchHHHH-----HHHHcCCChhheEEecCCcHHHHHHHHHH
Confidence 3689999999999999999998876543 2357888777665542 25666644221 112222222222
Q ss_pred HHHcCCeEEEEEeCCCcc
Q 043056 249 RIKAEKKILIILDNIWEN 266 (559)
Q Consensus 249 ~l~~~kr~LlVlDdv~~~ 266 (559)
.....+.-+||+|.+...
T Consensus 805 lv~~~~~~lVVIDsLq~l 822 (1706)
T 3cmw_A 805 LARSGAVDVIVVDSVAAL 822 (1706)
T ss_dssp HHHHTCCSEEEESCSTTC
T ss_pred HHHccCCCEEEEechhhh
Confidence 222356779999998643
No 254
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.49 E-value=0.14 Score=46.79 Aligned_cols=52 Identities=17% Similarity=0.212 Sum_probs=33.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHH
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIAD 228 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (559)
..|.+.|+.|+||||+++.+....... .+..+.+..-.....+.+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL-GIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCCcceeeeCCCCCHHHHHHHHHHh
Confidence 579999999999999999999988764 3433333332222233444444443
No 255
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.49 E-value=0.095 Score=52.04 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=29.6
Q ss_pred HHHHHHHcC--CCCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 163 LRNILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 163 ~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
...+++.+. .++..+|+|+|.+|+|||||+..+......
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 334444443 456789999999999999999999877643
No 256
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.41 E-value=0.033 Score=50.73 Aligned_cols=23 Identities=35% Similarity=0.310 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
.+++|+|+.|+|||||++.+.--
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999876
No 257
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.33 E-value=0.14 Score=49.18 Aligned_cols=50 Identities=10% Similarity=0.201 Sum_probs=33.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHH
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIAD 228 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (559)
.+++|.|++|+|||||+..++........ ..++|++... +..++...+..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G-~~v~~~~~e~--~~~~~~~r~~~ 85 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMG-KKVGLAMLEE--SVEETAEDLIG 85 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSC-CCEEEEESSS--CHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcC-CeEEEEeCcC--CHHHHHHHHHH
Confidence 58999999999999999999887654311 1466666543 33444444443
No 258
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.31 E-value=0.039 Score=51.43 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.+++|+|+.|+|||||++.+..-..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5899999999999999999986543
No 259
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.30 E-value=0.037 Score=59.33 Aligned_cols=47 Identities=19% Similarity=0.197 Sum_probs=38.5
Q ss_pred CCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 152 DYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
....++|.+..++.+...+..+ ..+.|+|++|+||||||+.++....
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 3456889888888877777655 4799999999999999999998764
No 260
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.25 E-value=0.19 Score=59.38 Aligned_cols=83 Identities=19% Similarity=0.247 Sum_probs=58.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCC-----Chhhh-HHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEE-----SESGR-ANSLFK 248 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-----~~~~~-~~~l~~ 248 (559)
-++|-|+|+.|+||||||.++....... =..++|+.+.+..+..- ++.+|.+.+.. +..+. +..+..
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~ 1503 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1503 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHH
Confidence 4799999999999999999999765543 34688999888877653 78888765431 11122 333333
Q ss_pred HHHcCCeEEEEEeCCC
Q 043056 249 RIKAEKKILIILDNIW 264 (559)
Q Consensus 249 ~l~~~kr~LlVlDdv~ 264 (559)
.+..+..-++|+|-|.
T Consensus 1504 ~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1504 LARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHTCCSEEEESCST
T ss_pred HHHcCCCCEEEEccHH
Confidence 3445777899999984
No 261
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.23 E-value=0.1 Score=48.29 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=24.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
....|+|.|+.|+||||+++.+......
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3468999999999999999999998764
No 262
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.23 E-value=0.053 Score=51.32 Aligned_cols=27 Identities=15% Similarity=0.297 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.-.+++|+|+.|+|||||++.+.....
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 446899999999999999999887654
No 263
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.20 E-value=0.04 Score=52.52 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.+++|+|+.|+|||||++.+.--.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 589999999999999999987643
No 264
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.19 E-value=0.3 Score=44.91 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
..++|.|++|+||||+|+.+.....
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 5689999999999999999998765
No 265
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.18 E-value=0.15 Score=52.53 Aligned_cols=43 Identities=19% Similarity=0.313 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 043056 159 RMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSD 202 (559)
Q Consensus 159 R~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (559)
-...++.+...+.+++ +.+.|.|++|+||||++..+.......
T Consensus 30 Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 30 QKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 3445566666665433 489999999999999999999887654
No 266
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.18 E-value=0.049 Score=51.19 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
.+++|+|+.|+|||||.+.+..-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 267
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.15 E-value=0.041 Score=52.09 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
-.+++|+|+.|+|||||.+.+.--.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999987643
No 268
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.14 E-value=0.21 Score=59.94 Aligned_cols=96 Identities=22% Similarity=0.341 Sum_probs=59.9
Q ss_pred HHHHHHHH--HcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcC--
Q 043056 161 FTLRNILS--ALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHE-- 236 (559)
Q Consensus 161 ~~~~~l~~--~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-- 236 (559)
.+++.++. -+ +.-.++.|.|++|+||||||.+++...... -..++|++.....+.. .++.++.+...
T Consensus 369 ~~LD~lLG~GGl--~~G~lilI~G~pGsGKTtLaLqia~~~a~~--G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~ 439 (2050)
T 3cmu_A 369 LSLDIALGAGGL--PMGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLL 439 (2050)
T ss_dssp HHHHHHHSSSSE--ETTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHH-----HHHHTTCCTTTCE
T ss_pred HHHHHHhccCCc--cCCcEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcCCCHHHH-----HHHHcCCCHHHeE
Confidence 35666553 12 234689999999999999999998876543 2368899888776643 25666654321
Q ss_pred ---CChhhhHHHHHHHH-HcCCeEEEEEeCCCc
Q 043056 237 ---ESESGRANSLFKRI-KAEKKILIILDNIWE 265 (559)
Q Consensus 237 ---~~~~~~~~~l~~~l-~~~kr~LlVlDdv~~ 265 (559)
....+.+....+.+ ...+.-+||+|.+..
T Consensus 440 I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 440 CSQPDTGEQALEICDALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp EECCSSHHHHHHHHHHHHHHTCCSEEEESCGGG
T ss_pred EeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHH
Confidence 11222222222322 235667999999853
No 269
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.12 E-value=0.055 Score=52.30 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 270
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.09 E-value=0.18 Score=51.05 Aligned_cols=89 Identities=19% Similarity=0.266 Sum_probs=53.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccc--------CCCC-eEEEEEeCCCc-CHHHHHHHHHHHhCCC-------CcCCC
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSD--------KLFD-QVVFVEVSQNQ-DIRKLQGEIADKLGLK-------FHEES 238 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~--------~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~ 238 (559)
..++|.|.+|+|||+|+.++.+..... ++-+ .++++-+++.. ...++.+++...=... ..+.+
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 347899999999999999999886542 1222 56677776543 4455656544321010 11111
Q ss_pred hhh------hHHHHHHHHH--cCCeEEEEEeCCC
Q 043056 239 ESG------RANSLFKRIK--AEKKILIILDNIW 264 (559)
Q Consensus 239 ~~~------~~~~l~~~l~--~~kr~LlVlDdv~ 264 (559)
... ....+-+.+. .++..||++||+-
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 111 1234455555 3899999999984
No 271
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.09 E-value=0.061 Score=53.28 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
...+++|+|+.|+||||++..++.....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 3579999999999999999999987654
No 272
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.07 E-value=0.19 Score=45.83 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=26.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCe
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQ 207 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~ 207 (559)
-..|.|.|+.|+||||+++.+.+..... .+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER-GIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT-TCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCc
Confidence 3689999999999999999999987654 3444
No 273
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.05 E-value=0.044 Score=51.13 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.+++|+|+.|+|||||.+.++--.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999987643
No 274
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.03 E-value=0.047 Score=51.07 Aligned_cols=25 Identities=20% Similarity=0.277 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
-.+++|+|+.|+|||||.+.+..-.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999987643
No 275
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.02 E-value=0.044 Score=51.98 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
-.+++|+|+.|+|||||++.+..-..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 36899999999999999999876543
No 276
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.02 E-value=0.045 Score=51.69 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.+++|+|+.|+|||||.+.+..-.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999987644
No 277
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.01 E-value=0.045 Score=50.66 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.+++|+|+.|+|||||.+.+..-.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999988654
No 278
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.00 E-value=0.053 Score=51.48 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
-.+++|+|+.|+|||||++.++--
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 279
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.00 E-value=0.13 Score=47.23 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=25.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 172 DPDVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
......|.|.|+.|+||||+++.+.+....
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345679999999999999999999998765
No 280
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.96 E-value=0.039 Score=50.48 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.+++|+|+.|+|||||.+.++.-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 579999999999999999987643
No 281
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.96 E-value=0.046 Score=51.75 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
-.+++|+|+.|+|||||++.+.--.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3689999999999999999987543
No 282
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.94 E-value=0.047 Score=51.20 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.+++|+|+.|+|||||++.+..-.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999987654
No 283
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=92.91 E-value=0.22 Score=51.49 Aligned_cols=47 Identities=19% Similarity=0.344 Sum_probs=35.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcC-HHHHHHHH
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQD-IRKLQGEI 226 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i 226 (559)
..++|.|..|+|||+|+.++.+... -+.++++-+++..+ ..++++++
T Consensus 228 qr~~I~g~~g~GKT~L~~~ia~~~~----~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 228 GTAAIPGPAGSGKTVTQHQLAKWSD----AQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp CEEEECSCCSHHHHHHHHHHHHHSS----CSEEEEEECCSSSSHHHHHHHHT
T ss_pred CeEEeecCCCCCHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHH
Confidence 4689999999999999999877532 45788888887654 34444443
No 284
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.89 E-value=0.076 Score=51.84 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=28.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEe
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEV 213 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 213 (559)
...+|+|+|++|+||||++..++....... ..+.++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g--~kVllid~ 141 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELG--YKVLIAAA 141 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTT--CCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeC
Confidence 457999999999999999999988766431 23455544
No 285
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.87 E-value=0.061 Score=48.01 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.-.|+|+|+.|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998754
No 286
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.86 E-value=0.051 Score=48.65 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
-+.|.|.|++|+||||||..+....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3678999999999999999998764
No 287
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.79 E-value=0.051 Score=51.41 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.+++|+|+.|+|||||++.+..-.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 589999999999999999987643
No 288
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.78 E-value=0.051 Score=51.25 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.+++|+|+.|+|||||.+.++--.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999987643
No 289
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.78 E-value=0.42 Score=48.85 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=40.3
Q ss_pred HHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHH
Q 043056 162 TLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIAD 228 (559)
Q Consensus 162 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (559)
.++.++.-+. .-.++.|.|.+|+||||||.+++.....+ =..++|++.... ..++...++.
T Consensus 186 ~LD~~lgGl~--~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms--~~ql~~R~~~ 246 (444)
T 3bgw_A 186 ELDRMTYGYK--RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMG--KKENIKRLIV 246 (444)
T ss_dssp HHHHHHSSBC--SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSC--TTHHHHHHHH
T ss_pred HHHhhcCCCC--CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCC--HHHHHHHHHH
Confidence 4566654332 23589999999999999999999876544 235777766533 3344444443
No 290
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.77 E-value=0.071 Score=53.33 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
++|.|.|++|+||||||..++....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999998754
No 291
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.75 E-value=0.065 Score=54.57 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=33.1
Q ss_pred ccchHHHHHHHHHHcC--------------CCCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 156 FESRMFTLRNILSALE--------------DPDVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 156 ~~gR~~~~~~l~~~L~--------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
++|.+...+.+..++. ....+-|.++|++|+||||+|+.++.....
T Consensus 17 IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 5676666666554441 113456899999999999999999988653
No 292
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.75 E-value=0.085 Score=49.65 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
...++.+.|.||+||||++..+.....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999987765
No 293
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.74 E-value=0.052 Score=51.70 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
-.+++|+|+.|+|||||++.++.-.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999987654
No 294
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.70 E-value=0.15 Score=52.29 Aligned_cols=85 Identities=18% Similarity=0.191 Sum_probs=50.7
Q ss_pred eEEEEEcCCCCcHHHHHH-HHHHHhcccCCCCe-EEEEEeCCCc-CHHHHHHHHHHHhCCC-------CcCCChhhh---
Q 043056 176 NMLGIYGMGGIGKTMLAE-EVARKVKSDKLFDQ-VVFVEVSQNQ-DIRKLQGEIADKLGLK-------FHEESESGR--- 242 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~-~v~~~~~~~~~f~~-~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 242 (559)
..++|.|.+|+|||+||. .+.+... -+. ++++-+++.. ...++.+++...=... ..+.+....
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a 238 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQKG----QDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLA 238 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGGS----CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHhhc----CCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHH
Confidence 458899999999999964 6666542 453 5777777654 4456666665432221 111111111
Q ss_pred ---HHHHHHHHH-cCCeEEEEEeCCC
Q 043056 243 ---ANSLFKRIK-AEKKILIILDNIW 264 (559)
Q Consensus 243 ---~~~l~~~l~-~~kr~LlVlDdv~ 264 (559)
...+-+.+. +++..||++||+-
T Consensus 239 ~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 239 PYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 122333333 4899999999984
No 295
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.70 E-value=0.071 Score=51.50 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34689999999999999999998765
No 296
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=92.66 E-value=0.3 Score=50.72 Aligned_cols=46 Identities=24% Similarity=0.396 Sum_probs=34.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCc-CHHHHHHH
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQ-DIRKLQGE 225 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~ 225 (559)
..++|.|..|+|||+|+.++.+... -+.++++-+++.. ...+++++
T Consensus 233 qr~~Ifgg~g~GKT~L~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 233 GAAAVPGPFGAGKTVVQHQIAKWSD----VDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHHH
T ss_pred CEEeeecCCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHH
Confidence 5689999999999999999988643 4578888777653 34444444
No 297
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.65 E-value=0.054 Score=50.81 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.+++|+|+.|+|||||.+.+.--.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 589999999999999999987654
No 298
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.60 E-value=0.058 Score=54.86 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=24.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 172 DPDVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.....+|.|+|++|+||||+|+.+....
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456899999999999999999988754
No 299
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.60 E-value=0.15 Score=52.31 Aligned_cols=85 Identities=14% Similarity=0.207 Sum_probs=50.4
Q ss_pred eEEEEEcCCCCcHHHHHH-HHHHHhcccCCCCe-EEEEEeCCCc-CHHHHHHHHHHHhCCC-------CcCCChhhh---
Q 043056 176 NMLGIYGMGGIGKTMLAE-EVARKVKSDKLFDQ-VVFVEVSQNQ-DIRKLQGEIADKLGLK-------FHEESESGR--- 242 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~-~v~~~~~~~~~f~~-~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 242 (559)
..++|.|.+|+|||+||. .+.+... .+. ++++-+++.. .+.++.+++...=... ..+.+....
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~~----~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 251 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQKG----QGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIA 251 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTTT----TTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHH
Confidence 358999999999999964 6666542 453 5777777654 4456666665421111 111111111
Q ss_pred ---HHHHHHHHH-cCCeEEEEEeCCC
Q 043056 243 ---ANSLFKRIK-AEKKILIILDNIW 264 (559)
Q Consensus 243 ---~~~l~~~l~-~~kr~LlVlDdv~ 264 (559)
...+-+.+. +++..||++||+-
T Consensus 252 ~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 252 PYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 122333333 4899999999984
No 300
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.58 E-value=0.13 Score=53.47 Aligned_cols=47 Identities=4% Similarity=-0.116 Sum_probs=35.0
Q ss_pred CccchHHHHHHHHHHcC--CCCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 155 PFESRMFTLRNILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 155 ~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
..+.|.+..+.+.+... ..+..+|.+.|++|+||||+|+.+......
T Consensus 373 ~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 34555555556666552 234578999999999999999999999864
No 301
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.58 E-value=0.085 Score=48.98 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
...+|+|.|+.|+||||+++.+.....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999988654
No 302
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.57 E-value=0.081 Score=49.28 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
...|+|.|+.|+||||+++.+.....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998763
No 303
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.56 E-value=0.056 Score=50.85 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.+++|+|+.|+|||||.+.++.-.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999987653
No 304
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.56 E-value=0.056 Score=51.28 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.+++|+|+.|+|||||.+.++--.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 589999999999999999987643
No 305
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.52 E-value=0.064 Score=51.25 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
-.++.|+|++|+|||||+.++.....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 36899999999999999999987543
No 306
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.52 E-value=0.057 Score=51.61 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.+++|+|+.|+|||||.+.++.-.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 589999999999999999987654
No 307
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.48 E-value=0.39 Score=50.07 Aligned_cols=62 Identities=5% Similarity=0.042 Sum_probs=41.2
Q ss_pred HHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 043056 163 LRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADK 229 (559)
Q Consensus 163 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 229 (559)
++.++.-+ ..-.++.|.|.+|+||||||.+++.....+. =..++|++... +..++...++..
T Consensus 232 LD~~lgGl--~~G~l~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 232 INDKTLGA--RGGEVIMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp HHHHHCCC--CTTCEEEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEESSS--CHHHHHHHHHHH
T ss_pred hhHhhccc--CCCeEEEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEeccC--CHHHHHHHHHHH
Confidence 45554322 2336889999999999999999988765431 12577877654 455666666543
No 308
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.46 E-value=0.084 Score=45.71 Aligned_cols=23 Identities=13% Similarity=0.335 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998753
No 309
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.42 E-value=0.16 Score=45.06 Aligned_cols=26 Identities=23% Similarity=0.102 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
....|.|+|.+|+|||||...+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999998753
No 310
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.42 E-value=0.079 Score=47.55 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
..|+|+|+.|+|||||.+.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
No 311
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.42 E-value=0.086 Score=54.24 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
...+++|+|++|+|||||++.+......
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 4579999999999999999999987654
No 312
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.40 E-value=0.074 Score=50.58 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.++|+|+.|+|||||.+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999998754
No 313
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.33 E-value=0.083 Score=52.73 Aligned_cols=27 Identities=26% Similarity=0.191 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
+...+++|+|++|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 445699999999999999999999754
No 314
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.24 E-value=0.095 Score=44.78 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
+.|.|+|.+|+|||||+..+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998753
No 315
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.22 E-value=0.15 Score=47.97 Aligned_cols=37 Identities=27% Similarity=0.323 Sum_probs=28.5
Q ss_pred HHHHHHHcCC--CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 163 LRNILSALED--PDVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 163 ~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
..-+..|+.. +...-|.++|++|+|||.+|..+++..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3446667663 334579999999999999999999853
No 316
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.13 E-value=0.21 Score=49.28 Aligned_cols=47 Identities=19% Similarity=0.381 Sum_probs=34.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhc--ccCCCCeEEEEEeCCCcCHH
Q 043056 172 DPDVNMLGIYGMGGIGKTMLAEEVARKVK--SDKLFDQVVFVEVSQNQDIR 220 (559)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~--~~~~f~~~~wv~~s~~~~~~ 220 (559)
....+++.+.|.||+||||+|..++.... .. =..++-++.....++.
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~--g~~vllid~D~~~~l~ 63 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQP--NEQFLLISTDPAHNLS 63 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCT--TSCEEEEECCSSCHHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC--CCeEEEEECCCCCChH
Confidence 45668999999999999999999988766 33 2346667666554433
No 317
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.10 E-value=0.29 Score=43.92 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=32.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHH
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIA 227 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 227 (559)
.|+|-|.-|+||||.++.+++....++ . .+++..-.......+..+.++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g-~-~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG-K-KVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT-C-CEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-C-cEEEEECCCCCcHHHHHHHHh
Confidence 588999999999999999999887653 2 234443333333444444444
No 318
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.06 E-value=0.096 Score=47.24 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=21.7
Q ss_pred HHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 164 RNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 164 ~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
+.+.+.....+.-.|.|+|.+|+|||||...+.+..
T Consensus 19 ~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 19 SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -----------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred hHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 333333334455678999999999999999988653
No 319
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.04 E-value=0.077 Score=46.94 Aligned_cols=21 Identities=38% Similarity=0.506 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 043056 177 MLGIYGMGGIGKTMLAEEVAR 197 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~ 197 (559)
-|+|+|.+|+|||||...+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999999876
No 320
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=92.04 E-value=0.23 Score=51.01 Aligned_cols=89 Identities=20% Similarity=0.275 Sum_probs=52.0
Q ss_pred eEEEEEcCCCCcHHHHH-HHHHHHhcc----cCCCC-eEEEEEeCCCc-CHHHHHHHHHHHhCCC-------CcCCChhh
Q 043056 176 NMLGIYGMGGIGKTMLA-EEVARKVKS----DKLFD-QVVFVEVSQNQ-DIRKLQGEIADKLGLK-------FHEESESG 241 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa-~~v~~~~~~----~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~ 241 (559)
..++|.|.+|+|||+|| ..+.+.... .++-+ .++++-+++.. .+.++.+++...=... ..+.+...
T Consensus 163 QR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~ 242 (510)
T 2ck3_A 163 QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPL 242 (510)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHH
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHH
Confidence 45889999999999995 566666542 12344 46777787654 4456666665421111 11111111
Q ss_pred h------HHHHHHHHH-cCCeEEEEEeCCC
Q 043056 242 R------ANSLFKRIK-AEKKILIILDNIW 264 (559)
Q Consensus 242 ~------~~~l~~~l~-~~kr~LlVlDdv~ 264 (559)
. ...+-+.+. +++..||++||+-
T Consensus 243 r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 243 QYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 1 122333333 4899999999984
No 321
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.97 E-value=0.073 Score=50.34 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.+++|+|+.|+|||||.+.++.-.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999987543
No 322
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.94 E-value=0.069 Score=49.42 Aligned_cols=25 Identities=24% Similarity=0.153 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
.-.+|+|.|+.|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4479999999999999999998765
No 323
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.91 E-value=0.082 Score=51.61 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
..+++.|+|+.|+|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46799999999999999999998653
No 324
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.83 E-value=0.099 Score=46.15 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.+.+|+|+.|+|||||+..++.-..
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 4889999999999999999887543
No 325
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.83 E-value=0.11 Score=46.07 Aligned_cols=109 Identities=19% Similarity=0.074 Sum_probs=51.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCe
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKK 255 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 255 (559)
.++.|+|+.|+||||++..+.......+ . .++++...... +.....+...++....... ......+.+.+. ++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g-~-~v~~~~~~~d~--r~~~~~i~s~~g~~~~~~~-~~~~~~~~~~~~-~~~ 77 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK-K-KVAVFKPKIDS--RYHSTMIVSHSGNGVEAHV-IERPEEMRKYIE-EDT 77 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT-C-EEEEEEEC-------CCCEECC----CEECEE-ESSGGGGGGGCC-TTE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEeecccc--ccCcccEEecCCCceeeEE-ECCHHHHHHHhc-CCC
Confidence 5788999999999999977776654332 2 23333322110 0000001111111111000 001111222222 345
Q ss_pred EEEEEeCCCcc-cccchhcCCCCCCCCCcEEEEEecCc
Q 043056 256 ILIILDNIWEN-LDLRVVGIPHGDGHKDCKVLLTARSL 292 (559)
Q Consensus 256 ~LlVlDdv~~~-~~~~~l~~~~~~~~~gs~IivTTR~~ 292 (559)
-+|++|.+... ..|......+.+ .|..|++|.+..
T Consensus 78 dvviIDE~Q~~~~~~~~~l~~l~~--~~~~Vi~~Gl~~ 113 (184)
T 2orw_A 78 RGVFIDEVQFFNPSLFEVVKDLLD--RGIDVFCAGLDL 113 (184)
T ss_dssp EEEEECCGGGSCTTHHHHHHHHHH--TTCEEEEEEESB
T ss_pred CEEEEECcccCCHHHHHHHHHHHH--CCCCEEEEeecc
Confidence 69999999765 334433332222 267788887754
No 326
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.82 E-value=0.088 Score=52.07 Aligned_cols=24 Identities=38% Similarity=0.379 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.+++|.|+.|+|||||.+.++--.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 589999999999999999998754
No 327
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.78 E-value=0.067 Score=51.77 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 34689999999999999999987643
No 328
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.77 E-value=0.097 Score=44.81 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58899999999999999998753
No 329
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=91.76 E-value=1.3 Score=43.75 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
+.++|+|+|.+|+|||||...+...
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCC
Confidence 4578999999999999999998764
No 330
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.68 E-value=0.1 Score=44.89 Aligned_cols=25 Identities=16% Similarity=0.403 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.--|.|+|.+|+|||||...+....
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468899999999999999998753
No 331
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.67 E-value=0.12 Score=45.73 Aligned_cols=24 Identities=13% Similarity=0.307 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999864
No 332
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.64 E-value=0.15 Score=44.82 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
.....|.|+|.+|+|||||...+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45567999999999999999998754
No 333
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=91.59 E-value=0.23 Score=48.72 Aligned_cols=48 Identities=17% Similarity=0.299 Sum_probs=35.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHH
Q 043056 172 DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRK 221 (559)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 221 (559)
+...+++.+.|-||+||||+|..++...... =..++-|+.....++..
T Consensus 13 ~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~--g~~vllid~D~~~~l~~ 60 (334)
T 3iqw_A 13 QRSLRWIFVGGKGGVGKTTTSCSLAIQLAKV--RRSVLLLSTDPAHNLSD 60 (334)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHTTS--SSCEEEEECCSSCHHHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhC--CCcEEEEECCCCCChhH
Confidence 4456788999999999999999999887643 23566777665554433
No 334
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.57 E-value=0.083 Score=50.74 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
-.+++|+|+.|+|||||.+.+..-.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3689999999999999999987654
No 335
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.57 E-value=0.099 Score=51.77 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
-.+++|+|+.|+|||||.+.+.--.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3689999999999999999988643
No 336
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=91.54 E-value=0.21 Score=46.43 Aligned_cols=43 Identities=28% Similarity=0.464 Sum_probs=31.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHH
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRK 221 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 221 (559)
.|+|.|-||+||||+|..+.......+ ..++-|......++..
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~~l~~ 44 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASDY--DKIYAVDGDPDSCLGQ 44 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTC--SCEEEEEECTTSCHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCcChHH
Confidence 367799999999999999999876542 3567777765555443
No 337
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.51 E-value=0.12 Score=45.35 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=25.2
Q ss_pred HHHHHHcCC-CCceEEEEEcCCCCcHHHHHHHHHH
Q 043056 164 RNILSALED-PDVNMLGIYGMGGIGKTMLAEEVAR 197 (559)
Q Consensus 164 ~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~ 197 (559)
.++.+.+.. .....|.|+|.+|+|||||...+..
T Consensus 6 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 6 SSMFDKLWGSNKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp HHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred HHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 334444444 4567899999999999999988764
No 338
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.51 E-value=0.13 Score=48.61 Aligned_cols=38 Identities=24% Similarity=0.502 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCC
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQ 215 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 215 (559)
++|+|.|-||+||||+|..++......+ ..++-|....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G--~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMG--KTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTT--CCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCC--CcEEEEcCCC
Confidence 5788899999999999999998876432 2466666643
No 339
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.50 E-value=0.1 Score=51.56 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.+++|.|+.|+|||||.+.++--.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 689999999999999999988643
No 340
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.46 E-value=0.16 Score=46.46 Aligned_cols=38 Identities=18% Similarity=0.069 Sum_probs=27.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCC
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQ 215 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 215 (559)
-.|.+.|.||+||||+|..+......++ ++ +..+.+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G-~~-V~v~d~D~ 44 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQG-VR-VMAGVVET 44 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTT-CC-EEEEECCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCC-CC-EEEEEeCC
Confidence 3588899999999999999988876542 33 44445544
No 341
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.43 E-value=0.079 Score=54.00 Aligned_cols=28 Identities=32% Similarity=0.512 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
...+|.|+|++|+||||++..+......
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999887653
No 342
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.34 E-value=0.14 Score=46.61 Aligned_cols=27 Identities=22% Similarity=0.103 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.....|.|+|++|+|||||+..+....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345679999999999999999998754
No 343
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.34 E-value=0.46 Score=43.80 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
+.+.|.|+.|+||||+.....-.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHhc
Confidence 57999999999999876665433
No 344
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=91.33 E-value=0.13 Score=46.47 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=23.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
.+|+|.|+.|+||||+++.+......
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~ 32 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNI 32 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 58999999999999999999998763
No 345
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=91.31 E-value=0.9 Score=41.97 Aligned_cols=38 Identities=24% Similarity=0.145 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 159 RMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 159 R~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
|....+.+..++... -+.|+|+.|.|||.+|..+....
T Consensus 95 ~~~Q~~ai~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 95 RDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CHHHHHHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhCC---CEEEEeCCCCCHHHHHHHHHHHc
Confidence 444444444454432 27889999999999999888765
No 346
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=91.29 E-value=0.11 Score=47.40 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.+|+|.|+.|+||||+++.+.....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999988653
No 347
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.26 E-value=0.11 Score=51.40 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
-.+++|.|+.|+|||||.+.++--.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3589999999999999999998653
No 348
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.23 E-value=0.12 Score=44.93 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
.+...|.|+|.+|+|||||...+...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567999999999999999998764
No 349
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.23 E-value=0.11 Score=51.73 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.+++|+|+.|+|||||.+.+.--.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 589999999999999999998654
No 350
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.22 E-value=0.12 Score=45.74 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
-.|.++|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998753
No 351
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=91.18 E-value=0.59 Score=47.80 Aligned_cols=85 Identities=20% Similarity=0.244 Sum_probs=50.0
Q ss_pred eEEEEEcCCCCcHHHHH-HHHHHHhcccCCCC-eEEEEEeCCCc-CHHHHHHHHHHHhCCCC-------cCCChhhh---
Q 043056 176 NMLGIYGMGGIGKTMLA-EEVARKVKSDKLFD-QVVFVEVSQNQ-DIRKLQGEIADKLGLKF-------HEESESGR--- 242 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~--- 242 (559)
..++|.|..|+|||+|+ ..+.+.. +-+ .++++-+++.. ...++.+++...=.... .+.+....
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a 238 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLA 238 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHH
Confidence 35889999999999996 4565542 233 36788888764 45566666544321211 11111111
Q ss_pred ---HHHHHHHHH-cCCeEEEEEeCCC
Q 043056 243 ---ANSLFKRIK-AEKKILIILDNIW 264 (559)
Q Consensus 243 ---~~~l~~~l~-~~kr~LlVlDdv~ 264 (559)
...+-+.+. +++..||++||+-
T Consensus 239 ~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 239 PYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEecChH
Confidence 112233332 4899999999984
No 352
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.16 E-value=0.13 Score=44.23 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.-|.|+|.+|+|||||...+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468899999999999999998754
No 353
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.16 E-value=0.11 Score=51.38 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
-.+++|.|+.|+|||||.+.++--.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3689999999999999999988653
No 354
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=91.14 E-value=1.4 Score=43.42 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
.....|+|+|.+|+|||||...+...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999998765
No 355
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.14 E-value=0.12 Score=52.11 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
...+++|+|+.|+|||||.+.+...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4569999999999999999999873
No 356
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.10 E-value=0.13 Score=44.00 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
-|.|+|.+|+|||||...+....
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998653
No 357
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.10 E-value=0.13 Score=44.13 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
--|.|+|.+|+|||||...+....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999988653
No 358
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.07 E-value=0.13 Score=50.87 Aligned_cols=112 Identities=12% Similarity=0.136 Sum_probs=57.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcC
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAE 253 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (559)
...+++|+|+.|+|||||.+.+........ -..++.+.-.-.+..... ..+..+. ............+...|. .
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~-~~~i~t~ed~~e~~~~~~-~~~v~q~---~~~~~~~~~~~~La~aL~-~ 195 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTK-YHHILTIEDPIEFVHESK-KCLVNQR---EVHRDTLGFSEALRSALR-E 195 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHC-CCEEEEEESSCCSCCCCS-SSEEEEE---EBTTTBSCHHHHHHHHTT-S
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCC-CcEEEEccCcHHhhhhcc-ccceeee---eeccccCCHHHHHHHHhh-h
Confidence 345999999999999999999887654320 011222211111100000 0000000 000011122234444554 5
Q ss_pred CeEEEEEeCCCcccccchhcCCCCCCCCCcEEEEEecCcch
Q 043056 254 KKILIILDNIWENLDLRVVGIPHGDGHKDCKVLLTARSLDV 294 (559)
Q Consensus 254 kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v 294 (559)
.+=+|++|+..+...+..+... ...|..||+||.....
T Consensus 196 ~PdvillDEp~d~e~~~~~~~~---~~~G~~vl~t~H~~~~ 233 (356)
T 3jvv_A 196 DPDIILVGEMRDLETIRLALTA---AETGHLVFGTLHTTSA 233 (356)
T ss_dssp CCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEESCSSH
T ss_pred CcCEEecCCCCCHHHHHHHHHH---HhcCCEEEEEEccChH
Confidence 6788899999876665543332 1235668888876544
No 359
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.05 E-value=0.12 Score=51.52 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.+++|+|+.|+|||||.+.++--.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 589999999999999999998653
No 360
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.01 E-value=0.13 Score=44.12 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
--|.|+|.+|+|||||...+.+..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999998753
No 361
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.01 E-value=0.12 Score=51.44 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
-.+++|.|+.|+|||||.+.++--.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3689999999999999999988643
No 362
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.00 E-value=0.12 Score=51.41 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
...++|+|+.|+|||||++.+.....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988654
No 363
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.98 E-value=0.18 Score=45.21 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=20.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHH
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVAR 197 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~ 197 (559)
.+...|+|+|.+|+|||||...+..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3445689999999999999998864
No 364
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.94 E-value=0.13 Score=44.29 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
-.|.|+|.+|+|||||...+....
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999988653
No 365
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=90.93 E-value=0.2 Score=52.62 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
+-.+|+|+|+.|+|||||++.+......
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 3468999999999999999999988753
No 366
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.91 E-value=0.14 Score=44.13 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
-|.|+|.+|+|||||...+....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998764
No 367
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.91 E-value=0.19 Score=44.32 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=25.3
Q ss_pred HHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 165 NILSALEDPDVNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 165 ~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
.+.+ +.......|.|+|.+|+|||||...+...
T Consensus 7 ~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 7 RIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 4444 33455568999999999999999998854
No 368
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=90.86 E-value=0.16 Score=43.94 Aligned_cols=24 Identities=38% Similarity=0.433 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
.--|.|+|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346899999999999999998754
No 369
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.86 E-value=0.074 Score=50.31 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
+...|+|.|+.|+||||+++.+....
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999988765
No 370
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.83 E-value=0.15 Score=50.85 Aligned_cols=28 Identities=14% Similarity=0.275 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
..-.+++|+|+.|+||||+++.+.....
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3456899999999999999999987654
No 371
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=90.79 E-value=0.14 Score=44.09 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
--|.|+|.+|+|||||...+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358899999999999999998764
No 372
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.77 E-value=0.21 Score=48.20 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=26.6
Q ss_pred HHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 163 LRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 163 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
+++|.+.+. -.+++++|++|+|||||.+.+. ...
T Consensus 156 i~~L~~~l~---G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 156 IDELVDYLE---GFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp HHHHHHHTT---TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred HHHHHhhcc---CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 456666653 2589999999999999999998 543
No 373
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=90.77 E-value=0.15 Score=52.29 Aligned_cols=85 Identities=18% Similarity=0.263 Sum_probs=48.4
Q ss_pred eEEEEEcCCCCcHHHHH-HHHHHHhcccCCCC-eEEEEEeCCCc-CHHHHHHHHHHHhCCC-------CcCCChh-----
Q 043056 176 NMLGIYGMGGIGKTMLA-EEVARKVKSDKLFD-QVVFVEVSQNQ-DIRKLQGEIADKLGLK-------FHEESES----- 240 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~----- 240 (559)
..++|.|.+|+|||+|| ..+.+... -+ .++++-+++.. ...++.+++...=... ..+.+..
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 239 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQG----QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA 239 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCCT----TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHH
Confidence 45789999999999996 46666542 44 35777777654 3445555443321110 1111111
Q ss_pred -hhHHHHHHHHH-cCCeEEEEEeCCC
Q 043056 241 -GRANSLFKRIK-AEKKILIILDNIW 264 (559)
Q Consensus 241 -~~~~~l~~~l~-~~kr~LlVlDdv~ 264 (559)
.....+-+.+. +++..||++||+-
T Consensus 240 ~~~a~tiAEyfrd~G~dVLli~Dslt 265 (507)
T 1fx0_A 240 PYTGAALAEYFMYRERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 11222333332 4899999999983
No 374
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.77 E-value=0.1 Score=51.45 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.+++|+|+.|+|||||.+.++--.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 589999999999999999998654
No 375
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.75 E-value=0.14 Score=45.19 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.--|.|+|.+|+|||||+..+....
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999998753
No 376
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.75 E-value=0.14 Score=45.26 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
..--|.|+|.+|+|||||+..+.+..
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999998887753
No 377
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.75 E-value=0.33 Score=50.90 Aligned_cols=37 Identities=19% Similarity=0.393 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeC
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVS 214 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 214 (559)
.++.|.|++|+|||||+..++....... ..++++...
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~G--~~vi~~~~e 318 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENACANK--ERAILFAYE 318 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHTTT--CCEEEEESS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCC--CCEEEEEEe
Confidence 5899999999999999999987654321 134555543
No 378
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=90.73 E-value=0.36 Score=43.98 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=24.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
-..|.+.|+.|+||||+++.+.+....
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 368999999999999999999998764
No 379
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.73 E-value=0.13 Score=44.88 Aligned_cols=23 Identities=26% Similarity=0.279 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999865
No 380
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=90.73 E-value=0.077 Score=56.58 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
-|.++|++|+|||+||+.+++..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTC
T ss_pred ceEEECCCchHHHHHHHHHHHhC
Confidence 58899999999999999988754
No 381
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=90.66 E-value=0.14 Score=44.16 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 043056 176 NMLGIYGMGGIGKTMLAEEVAR 197 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~ 197 (559)
--|.|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3588999999999999999863
No 382
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=90.65 E-value=0.18 Score=43.87 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
....|.|+|.+|+|||||...+....
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCc
Confidence 34578999999999999999998763
No 383
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=90.64 E-value=0.29 Score=51.74 Aligned_cols=29 Identities=14% Similarity=0.131 Sum_probs=25.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
....+|.|.|++|+||||+|+.+......
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 34578999999999999999999988653
No 384
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.63 E-value=0.17 Score=48.51 Aligned_cols=38 Identities=26% Similarity=0.478 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCC
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQ 215 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 215 (559)
++|+|.|-||+||||+|..++......+ ..++-|....
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G--~rVlliD~D~ 40 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMG--KKVMIVGCDP 40 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTT--CCEEEEEECS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCC--CeEEEEecCC
Confidence 6788899999999999999998876432 2456666644
No 385
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.62 E-value=0.12 Score=44.50 Aligned_cols=23 Identities=26% Similarity=0.624 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
--|.|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999999864
No 386
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=90.62 E-value=0.15 Score=44.39 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
..-|.|+|.+|+|||||...+....
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 3468999999999999999998653
No 387
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=90.60 E-value=0.13 Score=44.20 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 043056 177 MLGIYGMGGIGKTMLAEEVAR 197 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~ 197 (559)
-|.|+|.+|+|||||...+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 578999999999999998853
No 388
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=90.60 E-value=0.17 Score=50.07 Aligned_cols=27 Identities=22% Similarity=0.317 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
+..+|+|+|++|+|||||...+.....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 467999999999999999999987654
No 389
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.60 E-value=0.18 Score=43.97 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
....|.|+|.+|+|||||...+....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 34578999999999999999988753
No 390
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=90.58 E-value=0.15 Score=43.96 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
--|.|+|.+|+|||||...+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 458899999999999999988653
No 391
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=90.52 E-value=0.18 Score=52.84 Aligned_cols=29 Identities=17% Similarity=0.339 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
....+|.++|++|+||||+|+.+......
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~ 61 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNW 61 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34578999999999999999999887653
No 392
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=90.52 E-value=0.29 Score=50.66 Aligned_cols=46 Identities=24% Similarity=0.307 Sum_probs=33.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCc-CHHHHHHH
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQ-DIRKLQGE 225 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~ 225 (559)
..++|.|..|+|||+|+.++.+... -+.++++-+++.. ...+++++
T Consensus 222 qr~~Ifg~~g~GKT~l~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~ 268 (578)
T 3gqb_A 222 GTAAIPGPFGSGKSVTQQSLAKWSN----ADVVVYVGSGERGNEMTDVLVE 268 (578)
T ss_dssp CEEEECCCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHTT
T ss_pred CEEeeeCCCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHH
Confidence 4689999999999999999987643 4577888887653 33444433
No 393
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=90.51 E-value=0.39 Score=43.44 Aligned_cols=43 Identities=16% Similarity=0.286 Sum_probs=31.6
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHH
Q 043056 177 MLGIY-GMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKL 222 (559)
Q Consensus 177 vi~I~-G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~ 222 (559)
+|+|+ +-||+||||+|..++......+ .++.+......+....
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g---~VlliD~D~q~~~~~~ 45 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG---ETLLIDGDPNRSATGW 45 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS---CEEEEEECTTCHHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC---CEEEEECCCCCCHHHH
Confidence 56664 7899999999999998876542 6777777665554433
No 394
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=90.50 E-value=0.17 Score=44.90 Aligned_cols=26 Identities=12% Similarity=0.339 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
.....|.|+|.+|+|||||...+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567999999999999999998764
No 395
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=90.49 E-value=0.16 Score=43.73 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
--|.|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999875
No 396
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.42 E-value=0.17 Score=49.71 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
....+++|+|++|+|||||.+.+.....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 4567999999999999999999987654
No 397
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.41 E-value=0.29 Score=49.59 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
..-.+++|+|+.|+||||+.+.+.....
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4557899999999999999999988764
No 398
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.39 E-value=0.097 Score=51.80 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.+++|+|+.|+|||||.+.++--.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 589999999999999999988643
No 399
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=90.37 E-value=0.34 Score=43.45 Aligned_cols=43 Identities=16% Similarity=0.313 Sum_probs=31.2
Q ss_pred eEEEEE-cCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHH
Q 043056 176 NMLGIY-GMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIR 220 (559)
Q Consensus 176 ~vi~I~-G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 220 (559)
++|+|+ +-||+||||+|..+.......+ ..++.+......+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g--~~vlliD~D~~~~~~ 45 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSG--YNIAVVDTDPQMSLT 45 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTT--CCEEEEECCTTCHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCC--CeEEEEECCCCCCHH
Confidence 578887 6789999999999998876532 246677776554443
No 400
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.34 E-value=0.16 Score=45.21 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
+...|+|+|.+|+|||||...+.+.
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3357899999999999999998874
No 401
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.32 E-value=0.14 Score=47.25 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
-..|.|.|+.|+||||+++.+.+....
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 368999999999999999999988764
No 402
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.32 E-value=0.16 Score=44.95 Aligned_cols=26 Identities=31% Similarity=0.288 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
..--|.|+|.+|+|||||+..+....
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCC
Confidence 34568899999999999999988754
No 403
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=90.27 E-value=2.7 Score=43.07 Aligned_cols=88 Identities=13% Similarity=0.180 Sum_probs=55.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHhhchhcccCcCCChhhhhHHHHHHHHHHHHHHHHHhcCCCccccccCCCcccc
Q 043056 67 IEENVENWLARANNVIVEADKFTDDEATANKRCFKGLCPNLKTRRRLSKEAERQKEAAVKVREARRFDRISYCTAPEDIR 146 (559)
Q Consensus 67 ~~~~v~~Wl~~v~~~ayd~ed~ld~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~ 146 (559)
....+..|..++.++.-.+|-.+|--. . . ....+..+..++..+..+++++....
T Consensus 161 ~~~~~~~~r~~l~~~~a~iEa~iDf~e--d-------~-~~~~~~~~~~~i~~l~~~l~~~~~~~--------------- 215 (462)
T 3geh_A 161 LAHPIRQLRANCLDILAEIEARIDFEE--D-------L-PPLDDEAIISDIENIAAEISQLLATK--------------- 215 (462)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTSSS--S-------S-CCCCTTTHHHHHHHHHHHHHHHTTTH---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccc--c-------C-ChhhHHHHHHHHHHHHHHHHHHHHHh---------------
Confidence 356788899999998888888776211 0 0 01123456667777777776652210
Q ss_pred ccccCCCCCccchHHHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 147 LIFNKDYLPFESRMFTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 147 ~~~~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
...+... .+. .|+|+|.+|+|||||...+....
T Consensus 216 ---------------~~~~~~r----~~~-kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 216 ---------------DKGELLR----TGL-KVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp ---------------HHHHHHH----HCE-EEEEEECTTSSHHHHHHHHHHHH
T ss_pred ---------------hhhhhhc----CCC-EEEEEcCCCCCHHHHHHHHhCCC
Confidence 0001111 123 48999999999999999998764
No 404
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=90.26 E-value=0.16 Score=44.86 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
....|.|+|.+|+|||||...+....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 34578999999999999999988764
No 405
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=90.26 E-value=0.21 Score=43.02 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
...|.|+|.+|+|||||...+....
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568999999999999999997643
No 406
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.25 E-value=0.17 Score=44.04 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
...|.|+|.+|+|||||...+....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578999999999999999998764
No 407
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.23 E-value=0.2 Score=43.70 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
+-|.|.|++|+||||||..+..+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 56889999999999999999874
No 408
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.22 E-value=0.15 Score=51.06 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
-.+++|+|+.|+|||||.+.+.--
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCChHHHHHHHHhCC
Confidence 368999999999999999998853
No 409
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.21 E-value=0.13 Score=51.25 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.+++|+|+.|+|||||++.+.....
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 5799999999999999999987543
No 410
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.21 E-value=0.15 Score=44.41 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
.--|.|+|.+|+|||||...+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 346889999999999999998764
No 411
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=90.12 E-value=0.17 Score=44.49 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
--|.|+|.+|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 468899999999999999998754
No 412
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.09 E-value=0.17 Score=44.88 Aligned_cols=25 Identities=32% Similarity=0.218 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.--|.|+|.+|+|||||++.+....
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3468899999999999997666543
No 413
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.07 E-value=0.16 Score=44.50 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.--|.|+|.+|+|||||...+.+..
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4568999999999999999998763
No 414
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=90.04 E-value=0.16 Score=44.66 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.--|.|+|.+|+|||||...+....
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568899999999999999998764
No 415
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.04 E-value=0.14 Score=44.70 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
--|.++|.+|+|||||...+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999999875
No 416
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.02 E-value=0.19 Score=44.83 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
.--|+|+|.+|+|||||...+...
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999998753
No 417
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=90.00 E-value=0.18 Score=44.54 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
..-|.|+|.+|+|||||...+....
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568899999999999999998753
No 418
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=89.95 E-value=0.18 Score=43.87 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
--|.|+|..|+|||||...+....
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468899999999999999998653
No 419
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=89.93 E-value=0.18 Score=44.69 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.--|+|+|..|+|||||...+....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568999999999999999988754
No 420
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=89.90 E-value=0.14 Score=49.52 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 043056 177 MLGIYGMGGIGKTMLAEEVAR 197 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~ 197 (559)
-|+|+|++|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 459999999999999999774
No 421
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=89.83 E-value=0.19 Score=44.07 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999998764
No 422
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=89.83 E-value=0.18 Score=44.96 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=21.7
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHH
Q 043056 172 DPDVNMLGIYGMGGIGKTMLAEEVAR 197 (559)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~ 197 (559)
..+..-|.|+|.+|+|||||...+..
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHh
Confidence 34456799999999999999998864
No 423
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=89.81 E-value=0.47 Score=42.87 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
+.|+|-|.-|+||||+++.+.+...
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 5789999999999999999999875
No 424
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=89.78 E-value=0.19 Score=44.02 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
..-|.|+|.+|+|||||...+....
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 3568899999999999999998754
No 425
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=89.78 E-value=0.19 Score=43.87 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
.--|.|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999988764
No 426
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.76 E-value=0.19 Score=44.49 Aligned_cols=24 Identities=29% Similarity=0.230 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
--|.|+|.+|+|||||...+....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 468899999999999999998764
No 427
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=89.74 E-value=0.19 Score=43.81 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.-|.|+|.+|+|||||...+....
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998753
No 428
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=89.73 E-value=0.12 Score=46.59 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=21.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHH
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVAR 197 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~ 197 (559)
.....|+|+|+.|+|||||.+.+..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3446899999999999999988764
No 429
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=89.72 E-value=0.19 Score=49.65 Aligned_cols=25 Identities=24% Similarity=0.512 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.+++|+|+.|+|||||.+.+.....
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5899999999999999999999865
No 430
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=89.69 E-value=0.17 Score=44.56 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 043056 177 MLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
-|.|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998764
No 431
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.69 E-value=0.2 Score=43.70 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.--|.|+|.+|+|||||...+....
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3468999999999999999988754
No 432
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=89.68 E-value=0.15 Score=45.69 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHH
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVA 196 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~ 196 (559)
....|+|+|.+|+|||||...+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999999885
No 433
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=89.65 E-value=0.18 Score=43.99 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
...-|.|+|.+|+|||||...+...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999998754
No 434
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=89.63 E-value=0.19 Score=43.88 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
...|.|+|.+|+|||||...+.+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4578999999999999999998653
No 435
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.54 E-value=0.25 Score=42.11 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
..+..|+|+.|+||||+...++.-.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999987644
No 436
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.52 E-value=0.25 Score=43.98 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
...--|.|+|.+|+|||||+..+....
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC
Confidence 344578999999999999999998763
No 437
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.50 E-value=0.2 Score=45.10 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
..-|+|+|.+|+|||||+..+....
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4578999999999999999988753
No 438
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=89.48 E-value=0.23 Score=48.93 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=24.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 172 DPDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
..+..+|+|+|++|+|||||+..+.....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35668999999999999999999987654
No 439
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=89.47 E-value=0.2 Score=44.88 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
....|.|+|.+|+|||||...+....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34578999999999999999998754
No 440
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=89.44 E-value=0.28 Score=43.89 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
...-|.|+|.+|+|||||...+....
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC
Confidence 34578999999999999999988654
No 441
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=89.43 E-value=0.2 Score=45.19 Aligned_cols=26 Identities=23% Similarity=0.184 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
..--|.|+|.+|+|||||+..+....
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578899999999999999998753
No 442
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=89.41 E-value=0.29 Score=43.94 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
....+|+|+|+.|+||+|+|..+.+..
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHc
Confidence 355799999999999999999987754
No 443
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=89.34 E-value=0.22 Score=44.08 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
..-|.|+|.+|+|||||...+....
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568899999999999999998753
No 444
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=89.33 E-value=0.23 Score=44.90 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
....|.|+|.+|+|||||...+....
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999998764
No 445
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=89.30 E-value=0.21 Score=44.73 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
...-|+|+|.+|+|||||...+....
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 44678999999999999999998754
No 446
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=89.30 E-value=0.21 Score=44.39 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.--|+|+|.+|+|||||...+....
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4568899999999999999998764
No 447
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=89.30 E-value=0.44 Score=50.05 Aligned_cols=46 Identities=15% Similarity=0.128 Sum_probs=32.8
Q ss_pred ccchHHHHHHHHHHcC--CCCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 156 FESRMFTLRNILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 156 ~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
.+.|.+..+.+.+... .....+|.+.|++|+||||+|+.+......
T Consensus 351 ~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 351 WFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 3344445555555552 234578999999999999999999987654
No 448
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=89.29 E-value=0.24 Score=51.14 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVKS 201 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (559)
....+|.++|++|+||||+++.+......
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 34568999999999999999999987653
No 449
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=89.26 E-value=0.21 Score=44.33 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.--|+|+|.+|+|||||...+....
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568999999999999999998764
No 450
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=89.25 E-value=0.22 Score=44.11 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
--|.|+|.+|+|||||...+....
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468899999999999999988753
No 451
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=89.23 E-value=0.22 Score=43.97 Aligned_cols=25 Identities=24% Similarity=0.213 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
..-|.|+|.+|+|||||...+....
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 3578999999999999999998754
No 452
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=89.20 E-value=0.45 Score=47.43 Aligned_cols=45 Identities=16% Similarity=0.232 Sum_probs=32.9
Q ss_pred CCceEEEEEc-CCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCH
Q 043056 173 PDVNMLGIYG-MGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDI 219 (559)
Q Consensus 173 ~~~~vi~I~G-~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 219 (559)
.+.++|+|+| -||+||||+|..++...... =..++.+.+.+..++
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~--g~rVlliD~D~~~~l 186 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANM--GKKVFYLNIEQCGTT 186 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHH--TCCEEEEECCTTCCH
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhC--CCCEEEEECCCCCCH
Confidence 4578899985 99999999999998876543 224677776644443
No 453
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=89.20 E-value=0.28 Score=44.99 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
...+|+|.|+.|+||||+|+.+.....
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 346999999999999999999999875
No 454
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=89.18 E-value=0.22 Score=44.17 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.--|.|+|.+|+|||||...+....
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 4568899999999999999998764
No 455
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=89.18 E-value=0.25 Score=43.45 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.....|.|+|.+|+|||||...+....
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 455678999999999999999988654
No 456
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=89.17 E-value=0.25 Score=52.54 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
...+|.|.|++|+||||+|+.+.....
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 557899999999999999999998864
No 457
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=89.15 E-value=0.19 Score=44.31 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=24.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCc
Q 043056 178 LGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQ 217 (559)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 217 (559)
+.|+|.+|+||||+|.++... . ..++++.-+..+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~-----~~~~yiaT~~~~ 35 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-A-----PQVLYIATSQIL 35 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-C-----SSEEEEECCCC-
T ss_pred EEEECCCCCcHHHHHHHHHhc-C-----CCeEEEecCCCC
Confidence 689999999999999998854 2 135566554443
No 458
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=89.10 E-value=0.22 Score=49.22 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.+++|+|++|+|||||.+.+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 589999999999999999887543
No 459
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.05 E-value=0.18 Score=51.77 Aligned_cols=26 Identities=23% Similarity=0.152 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
-.+++|+|+.|+|||||++.++.-..
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCccc
Confidence 35799999999999999999988654
No 460
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=89.03 E-value=0.23 Score=43.98 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
..-|.|+|..|+|||||...+....
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3568999999999999999998754
No 461
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.03 E-value=0.14 Score=50.27 Aligned_cols=104 Identities=14% Similarity=0.119 Sum_probs=52.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCCCcCCChhhhHHHHHHHHHcCCe
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIADKLGLKFHEESESGRANSLFKRIKAEKK 255 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 255 (559)
.+++|+|+.|+|||||++.+...... -...+.+.-......... + +.++.-. + ........+...+. .++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~---~~g~i~i~~~~e~~~~~~-~---~~i~~~~-g-gg~~~r~~la~aL~-~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK---EERIISIEDTEEIVFKHH-K---NYTQLFF-G-GNITSADCLKSCLR-MRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT---TSCEEEEESSCCCCCSSC-S---SEEEEEC-B-TTBCHHHHHHHHTT-SCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC---CCcEEEECCeeccccccc-h---hEEEEEe-C-CChhHHHHHHHHhh-hCC
Confidence 47999999999999999998876543 234555542221110000 0 0000000 0 11112223344444 467
Q ss_pred EEEEEeCCCcccccchhcCCCCCCCCCcEEEEEecCc
Q 043056 256 ILIILDNIWENLDLRVVGIPHGDGHKDCKVLLTARSL 292 (559)
Q Consensus 256 ~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~ 292 (559)
=+|++|++.+...++.+. .+.. .+..+|+||...
T Consensus 242 ~ilildE~~~~e~~~~l~-~~~~--g~~tvi~t~H~~ 275 (330)
T 2pt7_A 242 DRIILGELRSSEAYDFYN-VLCS--GHKGTLTTLHAG 275 (330)
T ss_dssp SEEEECCCCSTHHHHHHH-HHHT--TCCCEEEEEECS
T ss_pred CEEEEcCCChHHHHHHHH-HHhc--CCCEEEEEEccc
Confidence 788899987755444332 2211 122366666543
No 462
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=88.96 E-value=0.24 Score=43.79 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
...-|.|+|.+|+|||||...+....
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCC
Confidence 34578999999999999999988653
No 463
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=88.96 E-value=0.27 Score=45.05 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
.....|.|+|.+|+|||||...+...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999998765
No 464
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=88.94 E-value=0.24 Score=47.83 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
+...|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3468999999999999999999864
No 465
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=88.94 E-value=0.26 Score=45.64 Aligned_cols=27 Identities=15% Similarity=0.215 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.....|+|+|.+|+|||||...+....
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCC
Confidence 345689999999999999999988653
No 466
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=88.87 E-value=0.24 Score=44.22 Aligned_cols=26 Identities=12% Similarity=0.240 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
...-|.|+|.+|+|||||...+....
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 45678999999999999999998653
No 467
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=88.79 E-value=0.26 Score=43.74 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
....|.|+|.+|+|||||...+...
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998754
No 468
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=88.79 E-value=0.23 Score=45.15 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVAR 197 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~ 197 (559)
..-|+|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35689999999999999998863
No 469
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=88.74 E-value=0.24 Score=44.45 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
..-|.|+|.+|+|||||...+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999988753
No 470
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=88.71 E-value=0.25 Score=43.65 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
..|.|+|.+|+|||||...+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998764
No 471
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=88.70 E-value=0.25 Score=47.88 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
+....|+|+|.+|+|||||...+...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45678999999999999999998865
No 472
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.69 E-value=0.36 Score=48.75 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=25.0
Q ss_pred HHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 163 LRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 163 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
++.+--.+..+...-++|+|+.|+|||||.+.++..
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 444433333443334999999999999999998764
No 473
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=88.66 E-value=0.21 Score=44.66 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.-|.|+|.+|+|||||...+....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999988653
No 474
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.66 E-value=0.33 Score=43.05 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
...-|.|+|.+|+|||||...+...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3456899999999999999999874
No 475
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=88.57 E-value=0.25 Score=50.79 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.+++|+|+.|+|||||.+.+.--..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 7999999999999999999987654
No 476
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=88.55 E-value=0.63 Score=50.17 Aligned_cols=62 Identities=23% Similarity=0.219 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHHHHHHHH
Q 043056 161 FTLRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRKLQGEIA 227 (559)
Q Consensus 161 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 227 (559)
...+.+...|... .+..|+||+|+|||+.+.++....-.+ ...+.++...+..+..+...+.
T Consensus 193 ~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 193 SQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp HHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHH
Confidence 3444555555432 467899999999997666555443332 2356777776666666666654
No 477
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=88.48 E-value=0.24 Score=45.17 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 043056 177 MLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
-|.|+|.+|+|||+|+..+.+.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4789999999999999998764
No 478
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=88.47 E-value=0.2 Score=44.62 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
..-|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 456899999999999999876653
No 479
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=88.38 E-value=0.7 Score=45.03 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=32.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcCHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQDIRK 221 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 221 (559)
..++...|.||+||||+|..++...... =..++-|+.....++..
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~--G~rVLlvD~D~~~~l~~ 58 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARS--GKKTLVISTDPAHSLSD 58 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEECCSSCCHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHC--CCcEEEEeCCCCcCHHH
Confidence 4677778999999999999998876644 22466666655555543
No 480
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.36 E-value=0.26 Score=44.34 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
..-|.|+|.+|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999998864
No 481
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=88.33 E-value=0.29 Score=46.36 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999998765
No 482
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=88.26 E-value=0.8 Score=45.24 Aligned_cols=47 Identities=17% Similarity=0.335 Sum_probs=33.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhc--ccCCCCeEEEEEeCCCcCHHH
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVK--SDKLFDQVVFVEVSQNQDIRK 221 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~--~~~~f~~~~wv~~s~~~~~~~ 221 (559)
+...++...|-||+||||+|..++.... ..+ ..++-|+.....++..
T Consensus 16 ~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G--~rVLLvD~D~~~~l~~ 64 (354)
T 2woj_A 16 TTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPN--KQFLLISTDPAHNLSD 64 (354)
T ss_dssp SSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTT--SCEEEEECCSSCCHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCC--CeEEEEECCCCCCHHH
Confidence 3456777789999999999999988776 432 2466666655555544
No 483
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=88.24 E-value=0.26 Score=50.22 Aligned_cols=27 Identities=26% Similarity=0.519 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
.-.+++|+|+.|+|||||++.+.....
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 336899999999999999999998764
No 484
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.23 E-value=0.27 Score=43.55 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
.-|.|+|.+|+|||||...+.+.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999876
No 485
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=88.18 E-value=0.27 Score=43.88 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
.--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999988754
No 486
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=88.18 E-value=0.69 Score=45.61 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=29.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCC
Q 043056 173 PDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQN 216 (559)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 216 (559)
+...++.+.|.||+||||+|..++......+ ..++-|+....
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G--~rVLlvD~D~~ 65 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKG--LKVVIVSTDPA 65 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSS--CCEEEEECCTT
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence 4456677779999999999999988765432 24556655443
No 487
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=88.14 E-value=0.26 Score=44.07 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
..--|.|+|.+|+|||||...+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456889999999999999998754
No 488
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.14 E-value=0.28 Score=44.10 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
..-|+|+|.+|+|||||...+....
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3578999999999999999988653
No 489
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=88.05 E-value=0.28 Score=44.21 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
..--|.|+|.+|+|||||+..+...
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999998864
No 490
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=88.03 E-value=0.28 Score=43.92 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
..-|.|+|.+|+|||||+..+....
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCC
Confidence 4578999999999999999987653
No 491
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=87.98 E-value=0.29 Score=43.81 Aligned_cols=25 Identities=32% Similarity=0.309 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
..-|+|+|.+|+|||||...+....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3568999999999999999988753
No 492
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=87.94 E-value=0.67 Score=45.26 Aligned_cols=45 Identities=18% Similarity=0.368 Sum_probs=31.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEeCCCcC
Q 043056 172 DPDVNMLGIYGMGGIGKTMLAEEVARKVKSDKLFDQVVFVEVSQNQD 218 (559)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 218 (559)
++..+++.+.|-||+||||+|..++......+ ..+.-++.....+
T Consensus 16 ~~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G--~rVllvD~D~~~~ 60 (329)
T 2woo_A 16 QTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVR--SSVLLISTDPAHN 60 (329)
T ss_dssp CTTCCEEEEECSSSSSHHHHHHHHHHHHHTSS--SCEEEEECCTTCH
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CeEEEEECCCCcC
Confidence 34456777889999999999999998876442 2456666554443
No 493
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=87.93 E-value=0.21 Score=43.79 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
...|.|+|..|+|||||...+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999998864
No 494
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=87.91 E-value=0.27 Score=47.44 Aligned_cols=35 Identities=20% Similarity=0.420 Sum_probs=26.6
Q ss_pred HHHHHHHcCCCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 043056 163 LRNILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKVK 200 (559)
Q Consensus 163 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (559)
++++.+++. -.+++|+|++|+|||||.+.+.....
T Consensus 160 v~~lf~~l~---geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 160 IEELKEYLK---GKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp HHHHHHHHS---SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred HHHHHHHhc---CCeEEEECCCCCcHHHHHHHhccccc
Confidence 455555553 25899999999999999999876543
No 495
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=87.88 E-value=0.27 Score=43.59 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 043056 176 NMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
.-|.|+|..|+|||||...+...
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999998754
No 496
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=87.88 E-value=0.27 Score=44.53 Aligned_cols=25 Identities=32% Similarity=0.294 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 174 DVNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
..--|.|+|.+|+|||||...+...
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3457889999999999999998754
No 497
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=87.84 E-value=0.31 Score=44.26 Aligned_cols=25 Identities=24% Similarity=0.213 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
.--|.|+|.+|+|||||...+....
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468899999999999999988753
No 498
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=87.82 E-value=0.17 Score=44.36 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=10.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 043056 175 VNMLGIYGMGGIGKTMLAEEVARK 198 (559)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~ 198 (559)
..-|.|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999988754
No 499
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=87.44 E-value=0.25 Score=50.05 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 043056 177 MLGIYGMGGIGKTMLAEEVARKV 199 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (559)
-|+|+|++|+|||||...++...
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 35999999999999999998653
No 500
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=87.40 E-value=0.3 Score=51.29 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=0.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 043056 177 MLGIYGMGGIGKTMLAEEVA 196 (559)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~ 196 (559)
+++|+|+.|+|||||++.+.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~ 68 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILA 68 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Done!