BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043057
         (236 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q14692|BMS1_HUMAN Ribosome biogenesis protein BMS1 homolog OS=Homo sapiens GN=BMS1
           PE=1 SV=1
          Length = 1282

 Score = 42.7 bits (99), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 23/76 (30%)

Query: 141 EEAYESIRDRFVMGDWSKAAQKNQVSKGKSEDDDSDDA--------VYGDYEDLETCEKH 192
           EE   SIRD FV G W               +DD D A        +YGD+EDLET + H
Sbjct: 748 EEVMNSIRDCFVTGKW---------------EDDKDAAKVLAEDEELYGDFEDLETGDVH 792

Query: 193 EGQCEDNSGSEGIENE 208
           +G+   N+ +E IE E
Sbjct: 793 KGKSGPNTQNEDIEKE 808


>sp|Q18DN4|HMU_HALWD Halomucin OS=Haloquadratum walsbyi (strain DSM 16790) GN=hmu PE=4
            SV=1
          Length = 9159

 Score = 38.1 bits (87), Expect = 0.048,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 11/158 (6%)

Query: 52   DSGDQKDSYEEGEDDDSDEGADDDNDTVDNQLSSGTEEREDNDDARISFSLYTGNQHQHQ 111
            DSGD   + + G+D  S    +DD D   NQ  SG +    NDD   S +  +G+    Q
Sbjct: 8387 DSGDDSSNQDSGDDSSSQ---NDDGDNSSNQ-DSGDDSSSQNDDGDNSSNQDSGDDSSSQ 8442

Query: 112  K------LSKEVHDSSKGEENDDDEFFKPKVKGNKEEAYESIRDRFVMG-DWSKAAQKNQ 164
                    +++  D S  + +D D+       G+     +S  D      D   ++ ++ 
Sbjct: 8443 NDDGDNSSNQDSGDDSSSQNDDGDDSSSQNDDGDNSSNQDSGDDSSSQNDDGDNSSNQDS 8502

Query: 165  VSKGKSEDDDSDDAVYGDYEDLETCEKHEGQCEDNSGS 202
                 S++DD D++   D  D  + +  +G  + NS +
Sbjct: 8503 GDDSSSQNDDGDNSSNQDSGDDSSSQNDDGDNKPNSAA 8540


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.304    0.127    0.353 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,181,560
Number of Sequences: 539616
Number of extensions: 4889994
Number of successful extensions: 41097
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 1196
Number of HSP's that attempted gapping in prelim test: 19370
Number of HSP's gapped (non-prelim): 7422
length of query: 236
length of database: 191,569,459
effective HSP length: 114
effective length of query: 122
effective length of database: 130,053,235
effective search space: 15866494670
effective search space used: 15866494670
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 59 (27.3 bits)