Query 043057
Match_columns 236
No_of_seqs 122 out of 190
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 12:24:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043057.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043057hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5192 BMS1 GTP-binding prote 99.1 2.8E-11 6.1E-16 118.8 4.4 148 74-231 473-661 (1077)
2 COG3529 Predicted nucleic-acid 17.0 50 0.0011 24.1 0.2 12 146-157 2-13 (66)
3 PF14983 DUF4513: Domain of un 8.4 1.2E+02 0.0025 24.9 -0.1 23 79-104 48-72 (132)
4 PF04633 Herpes_BMRF2: Herpesv 6.2 2.2E+02 0.0047 27.4 0.5 20 28-47 173-192 (349)
5 COG5515 Uncharacterized conser 6.1 1.8E+02 0.0039 21.3 -0.0 8 149-156 6-13 (70)
6 TIGR02443 conserved hypothetic 5.5 1.7E+02 0.0038 21.0 -0.4 10 147-156 2-11 (59)
7 PF09526 DUF2387: Probable met 5.4 1.7E+02 0.0036 21.6 -0.6 10 147-156 1-10 (71)
8 smart00153 VHP Villin headpiec 5.0 2.3E+02 0.0051 18.1 -0.0 16 78-94 20-35 (36)
9 PF02209 VHP: Villin headpiece 4.9 2.1E+02 0.0046 18.4 -0.3 15 79-94 21-35 (36)
10 KOG3448 Predicted snRNP core p 4.2 1.8E+02 0.0038 22.8 -1.2 10 146-155 56-65 (96)
No 1
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=2.8e-11 Score=118.81 Aligned_cols=148 Identities=20% Similarity=0.277 Sum_probs=89.2
Q ss_pred CCCCchhhhhccchhhhcccccc-ccc---cc-ccCCCCCccccc--c-cccCCC---CCCCCCCCCCCcccCCCCCch-
Q 043057 74 DDNDTVDNQLSSGTEEREDNDDA-RIS---FS-LYTGNQHQHQKL--S-KEVHDS---SKGEENDDDEFFKPKVKGNKE- 141 (236)
Q Consensus 74 dd~~~~~kWKenl~a~ra~~~~~-rr~---~k-IY~~~~~p~~~~--~-~ed~~~---~~~e~~ddddFFk~k~~~~~~- 141 (236)
++.++-.+||+.| |.+++.+.+ +|. .+ ||+.+++|.+|+ | |++..+ +.+..++.++||++....+..
T Consensus 473 dese~~~~w~~~~-a~kl~~sqs~kr~~ni~ki~y~e~lspeeci~e~kge~~~s~e~~~v~~D~~edff~vsk~~n~~~ 551 (1077)
T COG5192 473 DESEGNLRWKEGL-ASKLAYSQSGKRGRNIQKIFYDESLSPEECIEEYKGESAKSSESDLVVQDEPEDFFDVSKVANESI 551 (1077)
T ss_pred ccccccchhhhhh-hhhhhhhhcccccccccceeccccCCHHHHHHHhccccccccccccccccCchhhhhhhhhccccc
Confidence 3346778999999 999886554 332 78 999999999999 8 776222 234445667899954333222
Q ss_pred -------------------HHHHHHhhhhccCCcchhhh-hhhccCCCCCCCCCcccccCCCccccccccccCCC-CCCC
Q 043057 142 -------------------EAYESIRDRFVMGDWSKAAQ-KNQVSKGKSEDDDSDDAVYGDYEDLETCEKHEGQC-EDNS 200 (236)
Q Consensus 142 -------------------e~~dsIR~rFVTG~w~~~~~-~~~~~~~~~~~eddddE~~GDFEDLEtGE~~~~~~-~~~~ 200 (236)
..+..|+.||+++....... ...+ -.+...|+||||+..+...... ++..
T Consensus 552 s~~~ek~~~~~fe~L~kkw~s~~~lk~RF~~~~~lds~eg~EEl---------~qd~E~gn~ed~~d~e~~~d~e~ees~ 622 (1077)
T COG5192 552 SSNHEKLMESEFEELKKKWSSLAQLKSRFQKDATLDSIEGEEEL---------IQDDEKGNFEDLEDEENSSDNEMEESR 622 (1077)
T ss_pred ccchhhhchhHHHHHHHHHhhHHHHHHHhhcccccccccchhhh---------hhchhccCcccccccccccccchhhcc
Confidence 66889999999987653211 0011 0122358999999766543211 1111
Q ss_pred CC----CCCCCcchhHHHHHHH----HHHHHHHhhhhcC
Q 043057 201 GS----EGIENEDESAVEEWRL----KKLTLRAKFDAQY 231 (236)
Q Consensus 201 ~~----~~~~~~de~~~e~e~~----KkekLK~kFeee~ 231 (236)
++ ...+..++-+++.+++ ||++|+.+|+.+.
T Consensus 623 G~s~t~~~~e~~~e~~~e~ErE~na~kKE~lr~~Fe~ee 661 (1077)
T COG5192 623 GSSVTAENEESADEVDYETEREENARKKEELRGNFELEE 661 (1077)
T ss_pred CCcccccchhhccccchHHHhhhhhhhhhhhhcceeehh
Confidence 10 0011112223443333 5799999998776
No 2
>COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=17.01 E-value=50 Score=24.06 Aligned_cols=12 Identities=42% Similarity=0.783 Sum_probs=9.6
Q ss_pred HHhhhhccCCcc
Q 043057 146 SIRDRFVMGDWS 157 (236)
Q Consensus 146 sIR~rFVTG~w~ 157 (236)
+||.|||.|..-
T Consensus 2 ~~rKRFIAGA~C 13 (66)
T COG3529 2 AIRKRFIAGAVC 13 (66)
T ss_pred chhhhhhccCCC
Confidence 579999999643
No 3
>PF14983 DUF4513: Domain of unknown function (DUF4513)
Probab=8.38 E-value=1.2e+02 Score=24.92 Aligned_cols=23 Identities=22% Similarity=0.117 Sum_probs=14.3
Q ss_pred hhhhhccchhhhccccccccc-cc-ccC
Q 043057 79 VDNQLSSGTEEREDNDDARIS-FS-LYT 104 (236)
Q Consensus 79 ~~kWKenl~a~ra~~~~~rr~-~k-IY~ 104 (236)
++.||++| .-|...+ +.. +- ||-
T Consensus 48 VmpWK~dM-kfR~~nl--K~ae~~GIy~ 72 (132)
T PF14983_consen 48 VMPWKEDM-KFRNVNL--KNAELCGIYT 72 (132)
T ss_pred cCchhhhh-hhhHHhh--hhhhhccccc
Confidence 56799999 6555421 222 66 884
No 4
>PF04633 Herpes_BMRF2: Herpesvirus BMRF2 protein; InterPro: IPR006727 This is a family of unknown function found in the Herpes viruses.
Probab=6.19 E-value=2.2e+02 Score=27.38 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=17.7
Q ss_pred hhhHHHhhhchhhhhhhhcc
Q 043057 28 DNFVEYVEFNEVQHRRRAIF 47 (236)
Q Consensus 28 ~~~~~~~e~~~gr~rr~a~F 47 (236)
.|++++.-+..|-+|||+||
T Consensus 173 ~~~~~~~~y~~gl~rrrsIf 192 (349)
T PF04633_consen 173 RHFRRHPIYESGLERRRSIF 192 (349)
T ss_pred HHHHhCHHHHHHHHhccceE
Confidence 57888888889999999998
No 5
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=6.11 E-value=1.8e+02 Score=21.30 Aligned_cols=8 Identities=38% Similarity=0.505 Sum_probs=6.1
Q ss_pred hhhccCCc
Q 043057 149 DRFVMGDW 156 (236)
Q Consensus 149 ~rFVTG~w 156 (236)
=|||||+=
T Consensus 6 YRfiTGpD 13 (70)
T COG5515 6 YRFITGPD 13 (70)
T ss_pred eEeecCCc
Confidence 37999974
No 6
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=5.52 E-value=1.7e+02 Score=21.02 Aligned_cols=10 Identities=40% Similarity=0.833 Sum_probs=7.7
Q ss_pred HhhhhccCCc
Q 043057 147 IRDRFVMGDW 156 (236)
Q Consensus 147 IR~rFVTG~w 156 (236)
+|.|||.|-.
T Consensus 2 ~kKRFIAGA~ 11 (59)
T TIGR02443 2 IKKRFIAGAV 11 (59)
T ss_pred ccceEecccc
Confidence 5789999853
No 7
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=5.37 E-value=1.7e+02 Score=21.59 Aligned_cols=10 Identities=30% Similarity=0.783 Sum_probs=7.4
Q ss_pred HhhhhccCCc
Q 043057 147 IRDRFVMGDW 156 (236)
Q Consensus 147 IR~rFVTG~w 156 (236)
+|.|||.|-.
T Consensus 1 ~kkrFIAGa~ 10 (71)
T PF09526_consen 1 MKKRFIAGAV 10 (71)
T ss_pred CCceEecCcc
Confidence 4789999853
No 8
>smart00153 VHP Villin headpiece domain.
Probab=5.03 E-value=2.3e+02 Score=18.11 Aligned_cols=16 Identities=0% Similarity=-0.242 Sum_probs=10.3
Q ss_pred chhhhhccchhhhcccc
Q 043057 78 TVDNQLSSGTEEREDND 94 (236)
Q Consensus 78 ~~~kWKenl~a~ra~~~ 94 (236)
..|.||++- ..+...+
T Consensus 20 ~LP~WKq~~-lKk~~~L 35 (36)
T smart00153 20 KLPLWKQNQ-LKKKLGL 35 (36)
T ss_pred hCcHhhHHH-HHhhcCC
Confidence 357898877 6665543
No 9
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=4.87 E-value=2.1e+02 Score=18.38 Aligned_cols=15 Identities=0% Similarity=-0.064 Sum_probs=9.0
Q ss_pred hhhhhccchhhhcccc
Q 043057 79 VDNQLSSGTEEREDND 94 (236)
Q Consensus 79 ~~kWKenl~a~ra~~~ 94 (236)
-|.||++- ..+..++
T Consensus 21 lP~WKq~~-lKK~~~L 35 (36)
T PF02209_consen 21 LPKWKQNN-LKKKAGL 35 (36)
T ss_dssp S-HHHHHH-HHHHTTT
T ss_pred ChHHHHHH-HHHHhCC
Confidence 47898877 5655443
No 10
>KOG3448 consensus Predicted snRNP core protein [RNA processing and modification]
Probab=4.21 E-value=1.8e+02 Score=22.77 Aligned_cols=10 Identities=30% Similarity=0.783 Sum_probs=0.0
Q ss_pred HHhhhhccCC
Q 043057 146 SIRDRFVMGD 155 (236)
Q Consensus 146 sIR~rFVTG~ 155 (236)
++|+|||.|.
T Consensus 56 Sv~ncfIRGS 65 (96)
T KOG3448|consen 56 SVKNCFIRGS 65 (96)
T ss_pred eeeeEEEecc
Done!