Query 043057
Match_columns 236
No_of_seqs 122 out of 190
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 21:51:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043057.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043057hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gtj_A FYN-binding protein; SH 7.7 1E+02 0.0035 23.1 0.4 25 2-26 35-59 (96)
2 1wy3_A Villin; structural prot 6.5 90 0.0031 19.1 -0.4 15 79-94 20-34 (35)
3 1ri9_A FYN-binding protein; SH 6.1 1.8E+02 0.0063 21.9 1.1 23 4-26 51-73 (102)
4 1und_A Advillin, P92; actin bi 5.7 96 0.0033 19.2 -0.6 14 79-93 22-35 (37)
5 1ujs_A Actin-binding LIM prote 4.2 1.7E+02 0.0057 21.6 -0.3 17 78-95 66-82 (88)
6 2k6m_S Supervillin; SVHP, HP, 4.1 1.6E+02 0.0055 20.5 -0.4 16 78-94 51-66 (67)
7 1qzp_A Dematin; villin headpie 3.9 1.7E+02 0.0059 20.3 -0.4 15 79-94 53-67 (68)
8 1yu8_X Villin; alpha helix, 3- 3.5 2.1E+02 0.007 20.0 -0.3 15 79-94 52-66 (67)
9 2a40_C Wiskott-aldrich syndrom 3.5 2.3E+02 0.0078 17.0 -0.0 19 11-29 10-28 (32)
10 3r15_A Factor H binding protei 3.2 3.5E+02 0.012 20.1 0.7 10 144-153 80-89 (93)
No 1
>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A
Probab=7.66 E-value=1e+02 Score=23.10 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=19.1
Q ss_pred CCCCCCCcccccccccccccccCCc
Q 043057 2 EDSKSSDEDADIKKGEILKSVSDSD 26 (236)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (236)
.+++.+..+-.|++|++|..|.-..
T Consensus 35 ~~~k~g~~dLp~~~GE~LeII~~~e 59 (96)
T 2gtj_A 35 CDVKGGKNELSFKQGEQIEIIRITD 59 (96)
T ss_dssp SCEECTTSCCEECTTCCEEEEECTT
T ss_pred ecCCCCcccCCcCCCCEEEEEEccC
Confidence 3466777888999999998876543
No 2
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=6.46 E-value=90 Score=19.12 Aligned_cols=15 Identities=13% Similarity=0.003 Sum_probs=10.1
Q ss_pred hhhhhccchhhhcccc
Q 043057 79 VDNQLSSGTEEREDND 94 (236)
Q Consensus 79 ~~kWKenl~a~ra~~~ 94 (236)
-|.||++- ..+..++
T Consensus 20 LP~WKq~~-lKk~~~L 34 (35)
T 1wy3_A 20 LPLWLQQH-LKKEKGL 34 (35)
T ss_dssp SCHHHHHH-HHHHHTC
T ss_pred CcHHHHHH-HHHHhCC
Confidence 47898887 6665543
No 3
>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=6.08 E-value=1.8e+02 Score=21.92 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=18.0
Q ss_pred CCCCCcccccccccccccccCCc
Q 043057 4 SKSSDEDADIKKGEILKSVSDSD 26 (236)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~ 26 (236)
++....+-.|++|+||..|.-.+
T Consensus 51 ~k~g~~DLpfkkGE~LeVI~~~e 73 (102)
T 1ri9_A 51 KKWGTRDLQVKPGESLEVIQTTD 73 (102)
T ss_dssp SCCCTTBCCCCTTCBCEEEEESS
T ss_pred ccCCcccCCcCCCCEEEEEEeCC
Confidence 35667889999999998876543
No 4
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=5.66 E-value=96 Score=19.19 Aligned_cols=14 Identities=7% Similarity=0.007 Sum_probs=9.5
Q ss_pred hhhhhccchhhhccc
Q 043057 79 VDNQLSSGTEEREDN 93 (236)
Q Consensus 79 ~~kWKenl~a~ra~~ 93 (236)
-|.||++- ..+..+
T Consensus 22 LP~WKq~~-lKk~~~ 35 (37)
T 1und_A 22 LPGWKQLQ-MKKEKG 35 (37)
T ss_dssp SCHHHHHH-HHHHHH
T ss_pred ChHHHHHH-HHHHhc
Confidence 47898877 665544
No 5
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=4.18 E-value=1.7e+02 Score=21.55 Aligned_cols=17 Identities=0% Similarity=-0.238 Sum_probs=13.9
Q ss_pred chhhhhccchhhhccccc
Q 043057 78 TVDNQLSSGTEEREDNDD 95 (236)
Q Consensus 78 ~~~kWKenl~a~ra~~~~ 95 (236)
.-|+||++- ..|...+|
T Consensus 66 ~LP~WKq~~-lKK~~gLF 82 (88)
T 1ujs_A 66 RLALWKRNE-LKKQARLF 82 (88)
T ss_dssp TSCHHHHHH-HHHHTTCC
T ss_pred HChHHHHHH-HHHHcCCc
Confidence 468899998 88888777
No 6
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=4.12 E-value=1.6e+02 Score=20.46 Aligned_cols=16 Identities=0% Similarity=-0.118 Sum_probs=10.1
Q ss_pred chhhhhccchhhhcccc
Q 043057 78 TVDNQLSSGTEEREDND 94 (236)
Q Consensus 78 ~~~kWKenl~a~ra~~~ 94 (236)
.-|+||++- ..+..++
T Consensus 51 ~LP~WKq~~-lKk~~~L 66 (67)
T 2k6m_S 51 ALPAWKQVN-LKKAKGL 66 (67)
T ss_dssp TSCHHHHHH-HHHHHTC
T ss_pred HCcHHHHHH-HHHHhCC
Confidence 457788877 6655543
No 7
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=3.90 E-value=1.7e+02 Score=20.31 Aligned_cols=15 Identities=0% Similarity=-0.163 Sum_probs=8.8
Q ss_pred hhhhhccchhhhcccc
Q 043057 79 VDNQLSSGTEEREDND 94 (236)
Q Consensus 79 ~~kWKenl~a~ra~~~ 94 (236)
-|+||++- ..+..++
T Consensus 53 LP~WKq~~-lKk~~~L 67 (68)
T 1qzp_A 53 LALWKRNE-LKKKASL 67 (68)
T ss_dssp SCHHHHHH-HHHHHTC
T ss_pred ChHHHHHH-HHHHhcC
Confidence 46677766 5555443
No 8
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=3.52 E-value=2.1e+02 Score=19.96 Aligned_cols=15 Identities=7% Similarity=-0.093 Sum_probs=9.1
Q ss_pred hhhhhccchhhhcccc
Q 043057 79 VDNQLSSGTEEREDND 94 (236)
Q Consensus 79 ~~kWKenl~a~ra~~~ 94 (236)
-|+||++- ..+..++
T Consensus 52 LP~WKq~~-lKk~~~L 66 (67)
T 1yu8_X 52 LPLWKQQN-LKKEKGL 66 (67)
T ss_dssp SCHHHHHH-HHHHTTC
T ss_pred ChHHHHHH-HHHHhcC
Confidence 46787776 5555443
No 9
>2a40_C Wiskott-aldrich syndrome protein family member 2; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus}
Probab=3.51 E-value=2.3e+02 Score=16.98 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=11.9
Q ss_pred cccccccccccccCCcchh
Q 043057 11 ADIKKGEILKSVSDSDEDN 29 (236)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~ 29 (236)
..|.+|.-||.|......+
T Consensus 10 ~~Ir~G~~Lk~Ve~~~~~e 28 (32)
T 2a40_C 10 SAIRQGFQLRRVEEQREQE 28 (32)
T ss_dssp HHHHHCCCCBCCCC-----
T ss_pred HHHHccCCcCCcccccccc
Confidence 4689999999998664433
No 10
>3r15_A Factor H binding protein; protein binding; 1.70A {Treponema denticola} PDB: 3qz0_A
Probab=3.16 E-value=3.5e+02 Score=20.08 Aligned_cols=10 Identities=30% Similarity=0.644 Sum_probs=8.0
Q ss_pred HHHHhhhhcc
Q 043057 144 YESIRDRFVM 153 (236)
Q Consensus 144 ~dsIR~rFVT 153 (236)
.+.||.|||-
T Consensus 80 ~e~LrkRFv~ 89 (93)
T 3r15_A 80 AAALRKRFIP 89 (93)
T ss_dssp HHHHHHHEEE
T ss_pred HHHHHHhhhh
Confidence 3589999985
Done!